Psyllid ID: psy9278

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MGSQCKLDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW
Secondary Structure (PSIPRED)
ccccccccccEEEEEEHHccccEEEEEEEEcccccEEEEcccccccccEEEEEEccccEEEEEEEcccccEEEEEcccccccccEEEEEEcccEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHccccHHHHHHEcccccccccEEEEccccEEEEEEccccccEEEEEEEEccccEEEEEEEEcccccEEcccccccHHHcEEEEEcccccEEEc
Coil and Loop (DISEMBL)
mgsqckldkpqiiCLVEKSLDyqlfdckwmpcsAKFIVlgmkpkgtgsiqmyeindgqpelvktvekpnafkcgtfnasplserylatgdfegklqiw
Flexible Loop (DISEMBL)
mgsqckldkpqiICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGtfnasplserylatgdfegklqiw
Low Complexity Region (SEG)
MGSQCKLDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW
Disordered region (IsUnstruct)
********KPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATG*********
Disordered Region (DISOPRED)
************ICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPE*****EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW
Disordered Region (DISEMBL)
MGSQCKLDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW
Disordered Region (DISPRO)
******LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSQCKLDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q5M7F6	358	WD repeat-containing prot	N/A	N/A	0.938	0.256	0.576	2e-28
Q29RZ9	357	WD repeat-containing prot	yes	N/A	0.938	0.257	0.576	6e-28
A4QNE6	358	WD repeat-containing prot	yes	N/A	0.938	0.256	0.576	5e-27
Q561Y0	358	WD repeat-containing prot	yes	N/A	0.938	0.256	0.532	1e-26
Q96MX6	357	WD repeat-containing prot	yes	N/A	0.938	0.257	0.543	1e-26
Q8BGF3	357	WD repeat-containing prot	yes	N/A	0.938	0.257	0.532	2e-25
Q54E33	357	WD repeat-containing prot	yes	N/A	0.846	0.232	0.319	0.0002

>sp|Q5M7F6|WDR92_XENLA WD repeat-containing protein 92 OS=Xenopus laevis GN=wdr92 PE=2 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/92 (57%), Positives = 70/92 (76%)

Query: 7  LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE 66
          L+KPQII  V+KS++Y LFDCKW+PCSAKF+ +G   +G+G +Q+YEI  G+ +L++  E
Sbjct: 5  LEKPQIIAHVQKSVNYTLFDCKWIPCSAKFVCVGNLARGSGVLQVYEIQQGEAKLLQETE 64

Query: 67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          KP   KCGTF AS + +RYLATGDF G L IW
Sbjct: 65 KPKPIKCGTFGASSMQQRYLATGDFGGNLNIW 96

Seems to act as a modulator of apoptosis.
Xenopus laevis (taxid: 8355)

>sp|Q29RZ9|WDR92_BOVIN WD repeat-containing protein 92 OS=Bos taurus GN=WDR92 PE=2 SV=1

 Score =  122 bits (307), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 67/92 (72%)

Query: 7  LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE 66
           +KPQII  ++KSL Y +FDCKWMPCSAKF+ +G   +GTG IQ+YEI  G  +L++ +E
Sbjct: 4  FEKPQIISHIQKSLSYTVFDCKWMPCSAKFVTMGNFARGTGVIQLYEIQQGDLKLLREIE 63

Query: 67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          K    KCGTF A+ L +RYLATGDF G L IW
Sbjct: 64 KAKPIKCGTFGATSLQQRYLATGDFAGNLHIW 95

Seems to act as a modulator of apoptosis.

Bos taurus (taxid: 9913)

>sp|A4QNE6|WDR92_XENTR WD repeat-containing protein 92 OS=Xenopus tropicalis GN=wdr92 PE=2 SV=1

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 68/92 (73%)

Query: 7  LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE 66
          L+KPQII  V+K + Y LFDCKW+PCSAKF+ +G   +G+G +Q+YEI  G+ +L++  E
Sbjct: 5  LEKPQIIAHVQKPVTYTLFDCKWIPCSAKFVCVGNLARGSGVLQVYEIQQGEAKLLQEAE 64

Query: 67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          KP   KCGTF AS L +RYLATGDF G L IW
Sbjct: 65 KPKPIKCGTFGASSLQQRYLATGDFGGNLNIW 96

Seems to act as a modulator of apoptosis.

Xenopus tropicalis (taxid: 8364)

>sp|Q561Y0|WDR92_DANRE WD repeat-containing protein 92 OS=Danio rerio GN=wdr92 PE=2 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/92 (53%), Positives = 70/92 (76%)

Query: 7  LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE 66
          L+KPQII  ++KSL+Y +F+ KW+PCSAKF+ +G   +GTG +Q+YEI  G+ +LV+ +E
Sbjct: 5  LEKPQIIAHIQKSLNYTVFESKWIPCSAKFVCMGNFARGTGVMQIYEIQHGELQLVREIE 64

Query: 67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          K    KCGTF A+ L +R+LATGDF+G L +W
Sbjct: 65 KSKPIKCGTFGATSLQQRHLATGDFDGNLNVW 96

Seems to act as a modulator of apoptosis.

Danio rerio (taxid: 7955)

>sp|Q96MX6|WDR92_HUMAN WD repeat-containing protein 92 OS=Homo sapiens GN=WDR92 PE=1 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 66/92 (71%)

Query: 7  LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE 66
           +KPQII  ++K  +Y +FDCKW+PCSAKF+ +G   +GTG IQ+YEI  G  +L++ +E
Sbjct: 4  FEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIE 63

Query: 67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          K    KCGTF A+ L +RYLATGDF G L IW
Sbjct: 64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIW 95

Seems to act as a modulator of apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q8BGF3|WDR92_MOUSE WD repeat-containing protein 92 OS=Mus musculus GN=Wdr92 PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/92 (53%), Positives = 66/92 (71%)

Query: 7  LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE 66
           +KPQII  ++K L+Y +FD KW+PCSAKF+ +G   +GTG IQ+YEI  G  +L++ +E
Sbjct: 4  FEKPQIIVHIQKGLNYTVFDSKWVPCSAKFVTMGNFARGTGVIQVYEIQRGDLKLLREIE 63

Query: 67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          K    KCGTF A+ L +R+LATGDF G L IW
Sbjct: 64 KAKPIKCGTFGAASLQQRFLATGDFGGNLHIW 95

Seems to act as a modulator of apoptosis.

Mus musculus (taxid: 10090)

>sp|Q54E33|WDR92_DICDI WD repeat-containing protein 92 homolog OS=Dictyostelium discoideum GN=wdr92 PE=4 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 14/97 (14%)

Query: 16  VEKSLDYQLFDCKWMPCSAKFIVLGMKPKG---TGSIQMYEI----NDGQPE--LVKTVE 66
           V K L  Q + C+W+P S   + +G K  G    G I+++++      G P+  LV   E
Sbjct: 21  VTKKLTSQPYSCQWIPTSCSVVTVGKKTSGGISKGDIKIHQLEFDDTSGDPKLNLVYENE 80

Query: 67  KPNAFKCGTF--NASPLSE---RYLATGDFEGKLQIW 98
             N F+C +F   A+ L +   R   TGDF G++  W
Sbjct: 81  FTNPFRCLSFFKQANQLQQQDNRKFITGDFNGQISEW 117

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
405971711	355	WD repeat-containing protein 92 [Crassos	0.938	0.259	0.652	3e-31
332027634	357	WD repeat-containing protein 92 [Acromyr	0.948	0.260	0.645	6e-31
405955292	162	WD repeat-containing protein 92 [Crassos	0.938	0.567	0.652	1e-30
260830383	355	hypothetical protein BRAFLDRAFT_216906 [	0.938	0.259	0.652	1e-30
156552307	357	PREDICTED: WD repeat-containing protein	0.948	0.260	0.645	1e-30
322788169	357	hypothetical protein SINV_06071 [Solenop	0.948	0.260	0.634	2e-30
307177454	357	WD repeat-containing protein 92 [Campono	0.948	0.260	0.645	3e-30
307202569	357	WD repeat-containing protein 92 [Harpegn	0.948	0.260	0.623	3e-30
242019997	354	conserved hypothetical protein [Pediculu	0.938	0.259	0.619	5e-30
308321262	358	WD repeat-containing protein 92 [Ictalur	0.938	0.256	0.597	3e-29

>gi|405971711|gb|EKC36534.1| WD repeat-containing protein 92 [Crassostrea gigas]

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/92 (65%), Positives = 74/92 (80%)

Query: 7  LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE 66
          +DKPQII  +EKSLDY LFD KW+PCSAKF+VLG   +GTG+IQ+YE++ GQ   VK +E
Sbjct: 1  MDKPQIIAHIEKSLDYTLFDTKWIPCSAKFVVLGSHARGTGAIQIYELSHGQINCVKEIE 60

Query: 67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          K  A KCGTF AS L +RYLATGDF+G++QIW
Sbjct: 61 KAKALKCGTFGASSLQQRYLATGDFDGRMQIW 92

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|332027634|gb|EGI67702.1| WD repeat-containing protein 92 [Acromyrmex echinatior]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 78/93 (83%)

Query: 6  KLDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV 65
          KL KPQIIC +EKS+DY LFD KW+PCSAKF+V+G +P+GTG IQ+YE+++G+ +LVK +
Sbjct: 3  KLSKPQIICHIEKSVDYSLFDAKWIPCSAKFVVMGSRPRGTGIIQIYEVSNGELKLVKNI 62

Query: 66 EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          E+ N  KCGTF AS L +RYLATGDF+GKL I+
Sbjct: 63 ERSNQIKCGTFKASNLRDRYLATGDFKGKLNIY 95

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405955292|gb|EKC22462.1| WD repeat-containing protein 92 [Crassostrea gigas]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 74/92 (80%)

Query: 7  LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE 66
          +DKPQII  +EKSLDY LFD KW+PCSAKF+VLG   +GTG+IQ+YE++ GQ   VK +E
Sbjct: 1  MDKPQIIAHIEKSLDYTLFDTKWIPCSAKFVVLGSHARGTGAIQIYELSHGQINCVKEIE 60

Query: 67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          K  A KCGTF AS L +RYLATGDF+G++QIW
Sbjct: 61 KAKALKCGTFGASSLQQRYLATGDFDGRMQIW 92

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|260830383|ref|XP_002610140.1| hypothetical protein BRAFLDRAFT_216906 [Branchiostoma floridae] gi|229295504|gb|EEN66150.1| hypothetical protein BRAFLDRAFT_216906 [Branchiostoma floridae]

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/92 (65%), Positives = 76/92 (82%)

Query: 7  LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE 66
          +DKPQII  VEKSL+Y LFDCKW+PCSAKF+VLG   +GTG++Q+YE++ G+ +L+K  E
Sbjct: 2  VDKPQIIAHVEKSLNYTLFDCKWIPCSAKFVVLGNHARGTGALQIYEVSKGEVKLLKERE 61

Query: 67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          KP AFKCGTF A+ L +R LATGDF+GKL IW
Sbjct: 62 KPKAFKCGTFGAASLQQRNLATGDFDGKLSIW 93

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156552307|ref|XP_001600814.1| PREDICTED: WD repeat-containing protein 92-like [Nasonia vitripennis]

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/93 (64%), Positives = 77/93 (82%)

Query: 6  KLDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV 65
          KL KP II  VEKSLDY LFD KW+PCSAKF+V+G +P+GTG IQ+YE++ G+  LVK++
Sbjct: 3  KLAKPIIISHVEKSLDYSLFDAKWIPCSAKFVVMGSRPRGTGLIQIYELSSGEINLVKSI 62

Query: 66 EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          E+P++ KCGTF AS L +RYLATGDF+GKL I+
Sbjct: 63 ERPSSIKCGTFKASSLRDRYLATGDFKGKLSIY 95

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788169|gb|EFZ13951.1| hypothetical protein SINV_06071 [Solenopsis invicta]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 77/93 (82%)

Query: 6  KLDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV 65
          KL KPQIIC +EKS+DY LFD KW+PCSAKF+V+G +P+GTG IQ+YE++ G+ +LVK +
Sbjct: 3  KLSKPQIICHIEKSVDYSLFDAKWIPCSAKFVVMGSRPRGTGIIQIYEVSSGELKLVKDI 62

Query: 66 EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          E+ N  KCGTF AS L +R+LATGDF+GKL I+
Sbjct: 63 ERSNQIKCGTFKASSLRDRFLATGDFKGKLNIY 95

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177454|gb|EFN66581.1| WD repeat-containing protein 92 [Camponotus floridanus]

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 77/93 (82%)

Query: 6  KLDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV 65
          KL KPQIIC +EKS+DY LFD KW+PCSAKF+V+G +P+GTG IQ+YE++ G+ +LVK +
Sbjct: 3  KLAKPQIICHIEKSVDYSLFDVKWIPCSAKFVVMGSRPRGTGIIQIYELSSGELKLVKDI 62

Query: 66 EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          E+ N  KCGTF AS L +RYLATGDF+GKL I+
Sbjct: 63 ERSNQMKCGTFKASNLRDRYLATGDFKGKLNIY 95

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202569|gb|EFN81904.1| WD repeat-containing protein 92 [Harpegnathos saltator]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 77/93 (82%)

Query: 6  KLDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV 65
          KL KPQIIC +EKS+DY LFD KW+PCSAKF+V+G +P+GTG IQ+YE++ G+ +L+K +
Sbjct: 3  KLSKPQIICHIEKSVDYSLFDVKWIPCSAKFVVMGARPRGTGIIQIYEVSSGELKLIKDI 62

Query: 66 EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          E+ N  KCGTF AS L +R+LATGDF+GKL I+
Sbjct: 63 ERSNQMKCGTFKASSLRDRHLATGDFKGKLNIY 95

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019997|ref|XP_002430444.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515582|gb|EEB17706.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 74/92 (80%)

Query: 7  LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE 66
          +DKPQIIC  EKS ++ ++D  W+PCSAKF+VLG +P+GTG+I +YEI  G+  L+K VE
Sbjct: 1  MDKPQIICHAEKSTNFSIYDALWIPCSAKFVVLGSQPRGTGAIHVYEITKGEVNLIKEVE 60

Query: 67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          K  AFKCGTF AS L ER+LATGDFEG++Q+W
Sbjct: 61 KSKAFKCGTFGASSLRERHLATGDFEGRMQVW 92

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308321262|gb|ADO27783.1| WD repeat-containing protein 92 [Ictalurus furcatus]

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/92 (59%), Positives = 73/92 (79%)

Query: 7  LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE 66
          L+KPQII   +KSL+Y LFDCKW+PCSAKF+ +G   +GTG++Q+YE+  G  +LVK +E
Sbjct: 5  LEKPQIIAHTQKSLNYTLFDCKWIPCSAKFVCMGNFARGTGALQVYEVQHGDVQLVKEIE 64

Query: 67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          KP AFKCGTF A+ L +R+LATGDF+G L +W
Sbjct: 65 KPKAFKCGTFGATSLQQRHLATGDFDGNLHVW 96

Source: Ictalurus furcatus

Species: Ictalurus furcatus

Genus: Ictalurus

Family: Ictaluridae

Order: Siluriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
UNIPROTKB|Q29RZ9	357	WDR92 "WD repeat-containing pr	0.928	0.254	0.582	5.7e-27
RGD|1563863	357	Wdr92 "WD repeat domain 92" [R	0.928	0.254	0.549	8.4e-26
UNIPROTKB|F1SJ04	668	LOC100515478 "Uncharacterized	0.928	0.136	0.571	9.4e-26
UNIPROTKB|F1PZ86	686	WDR92 "Uncharacterized protein	0.989	0.141	0.525	1e-25
UNIPROTKB|Q96MX6	357	WDR92 "WD repeat-containing pr	0.928	0.254	0.549	1.1e-25
ZFIN|ZDB-GENE-050417-93	358	wdr92 "WD repeat domain 92" [D	0.938	0.256	0.532	2.2e-25
MGI|MGI:2144224	357	Wdr92 "WD repeat domain 92" [M	0.928	0.254	0.538	2.6e-24
DICTYBASE|DDB_G0291822	357	wdr92 "WD40 repeat-containing	0.846	0.232	0.340	4.8e-06

UNIPROTKB|Q29RZ9 WDR92 "WD repeat-containing protein 92" [Bos taurus (taxid:9913)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 53/91 (58%), Positives = 67/91 (73%)

Query:     8 DKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEK 67
             +KPQII  ++KSL Y +FDCKWMPCSAKF+ +G   +GTG IQ+YEI  G  +L++ +EK
Sbjct:     5 EKPQIISHIQKSLSYTVFDCKWMPCSAKFVTMGNFARGTGVIQLYEIQQGDLKLLREIEK 64

Query:    68 PNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
                 KCGTF A+ L +RYLATGDF G L IW
Sbjct:    65 AKPIKCGTFGATSLQQRYLATGDFAGNLHIW 95

GO:0006915 "apoptotic process" evidence=IEA

RGD|1563863 Wdr92 "WD repeat domain 92" [Rattus norvegicus (taxid:10116)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 50/91 (54%), Positives = 68/91 (74%)

Query:     8 DKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEK 67
             +KPQII  ++K L+Y +FDCKW+PCSAKF+ +G   +GTG IQ+YEI  G  +L++ +EK
Sbjct:     5 EKPQIIVHIQKGLNYTVFDCKWVPCSAKFVTMGNFARGTGVIQVYEIQRGDLKLLREIEK 64

Query:    68 PNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
                 KCGTF A+ L +R+LATGDF+G L IW
Sbjct:    65 AKPIKCGTFGAASLQQRFLATGDFDGNLHIW 95

GO:0034968 "histone lysine methylation" evidence=ISO

GO:0035064 "methylated histone residue binding" evidence=ISO

UNIPROTKB|F1SJ04 LOC100515478 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 300 (110.7 bits), Expect = 9.4e-26, P = 9.4e-26
 Identities = 52/91 (57%), Positives = 68/91 (74%)

Query:     8 DKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEK 67
             +KPQII  ++KSL+Y +FDCKW+PCSAKF+ +G   +GTG IQ+YEI  G  +L++ +EK
Sbjct:   316 EKPQIIAHIQKSLNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEK 375

Query:    68 PNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
                 KCGTF A+ L +RYLATGDF G L IW
Sbjct:   376 AKPIKCGTFGATSLQQRYLATGDFAGNLHIW 406

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1PZ86 WDR92 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 300 (110.7 bits), Expect = 1.0e-25, P = 1.0e-25
 Identities = 51/97 (52%), Positives = 69/97 (71%)

Query:     2 GSQCKLDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPEL 61
             G+    +KPQII  ++K L+Y +FDCKW+PCSAKF+ +G   +GTG +Q+YEI  G  +L
Sbjct:   328 GAMSAFEKPQIIAHIQKGLNYTVFDCKWVPCSAKFVTMGNFARGTGVVQLYEIQHGDLKL 387

Query:    62 VKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
             ++ +EK    KCGTF A+ L +RYLATGDF G L IW
Sbjct:   388 LREIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIW 424

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q96MX6 WDR92 "WD repeat-containing protein 92" [Homo sapiens (taxid:9606)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 50/91 (54%), Positives = 66/91 (72%)

Query:     8 DKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEK 67
             +KPQII  ++K  +Y +FDCKW+PCSAKF+ +G   +GTG IQ+YEI  G  +L++ +EK
Sbjct:     5 EKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEK 64

Query:    68 PNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
                 KCGTF A+ L +RYLATGDF G L IW
Sbjct:    65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIW 95

GO:0006915 "apoptotic process" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

GO:0034968 "histone lysine methylation" evidence=IDA

ZFIN|ZDB-GENE-050417-93 wdr92 "WD repeat domain 92" [Danio rerio (taxid:7955)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 49/92 (53%), Positives = 70/92 (76%)

Query:     7 LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE 66
             L+KPQII  ++KSL+Y +F+ KW+PCSAKF+ +G   +GTG +Q+YEI  G+ +LV+ +E
Sbjct:     5 LEKPQIIAHIQKSLNYTVFESKWIPCSAKFVCMGNFARGTGVMQIYEIQHGELQLVREIE 64

Query:    67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
             K    KCGTF A+ L +R+LATGDF+G L +W
Sbjct:    65 KSKPIKCGTFGATSLQQRHLATGDFDGNLNVW 96

GO:0005575 "cellular_component" evidence=ND

GO:0006915 "apoptotic process" evidence=IEA

MGI|MGI:2144224 Wdr92 "WD repeat domain 92" [Mus musculus (taxid:10090)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 49/91 (53%), Positives = 66/91 (72%)

Query:     8 DKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEK 67
             +KPQII  ++K L+Y +FD KW+PCSAKF+ +G   +GTG IQ+YEI  G  +L++ +EK
Sbjct:     5 EKPQIIVHIQKGLNYTVFDSKWVPCSAKFVTMGNFARGTGVIQVYEIQRGDLKLLREIEK 64

Query:    68 PNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
                 KCGTF A+ L +R+LATGDF G L IW
Sbjct:    65 AKPIKCGTFGAASLQQRFLATGDFGGNLHIW 95

GO:0005575 "cellular_component" evidence=ND

GO:0006915 "apoptotic process" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=ISO

GO:0035064 "methylated histone residue binding" evidence=ISO

DICTYBASE|DDB_G0291822 wdr92 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 113 (44.8 bits), Expect = 4.8e-06, P = 4.8e-06
 Identities = 33/97 (34%), Positives = 49/97 (50%)

Query:    16 VEKSLDYQLFDCKWMPCSAKFIVLGMKPKG---TGSIQMY--EIND--GQPEL--VKTVE 66
             V K L  Q + C+W+P S   + +G K  G    G I+++  E +D  G P+L  V   E
Sbjct:    21 VTKKLTSQPYSCQWIPTSCSVVTVGKKTSGGISKGDIKIHQLEFDDTSGDPKLNLVYENE 80

Query:    67 KPNAFKCGTF--NASPLSE---RYLATGDFEGKLQIW 98
               N F+C +F   A+ L +   R   TGDF G++  W
Sbjct:    81 FTNPFRCLSFFKQANQLQQQDNRKFITGDFNGQISEW 117


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.138   0.438    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       98        98   0.00091  102 3  11 22  0.39    30
                                                     29  0.45    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  125 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:07
  No. of threads or processors used:  24
  Search cpu time:  10.27u 0.07s 10.34t   Elapsed:  00:00:09
  Total cpu time:  10.27u 0.07s 10.34t   Elapsed:  00:00:16
  Start:  Thu Aug 15 14:01:18 2013   End:  Thu Aug 15 14:01:34 2013

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96MX6	WDR92_HUMAN	No assigned EC number	0.5434	0.9387	0.2577	yes	N/A
A4QNE6	WDR92_XENTR	No assigned EC number	0.5760	0.9387	0.2569	yes	N/A
Q8BGF3	WDR92_MOUSE	No assigned EC number	0.5326	0.9387	0.2577	yes	N/A
Q29RZ9	WDR92_BOVIN	No assigned EC number	0.5760	0.9387	0.2577	yes	N/A
Q561Y0	WDR92_DANRE	No assigned EC number	0.5326	0.9387	0.2569	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.8
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.5
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.48
PTZ00421	493	coronin; Provisional	97.29
KOG1587|consensus	555		97.24
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.14
KOG0266|consensus	456		96.93
KOG0266|consensus	456		96.92
KOG0321|consensus	720		96.9
KOG0647|consensus	347		96.88
PTZ00421	493	coronin; Provisional	96.79
PLN00181	793	protein SPA1-RELATED; Provisional	96.65
PLN00181	793	protein SPA1-RELATED; Provisional	96.64
KOG0296|consensus	399		96.61
PTZ00420	568	coronin; Provisional	96.41
PTZ00420	568	coronin; Provisional	96.34
KOG0645|consensus	312		96.32
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	96.29
KOG0277|consensus	311		96.22
KOG0310|consensus	487		96.11
KOG0645|consensus	312		96.06
KOG0294|consensus	362		95.46
KOG0277|consensus	311		95.45
KOG2055|consensus	514		95.22
KOG0264|consensus	422		95.02
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	94.98
KOG0318|consensus	603		94.8
KOG2106|consensus	626		94.7
KOG0284|consensus	464		94.34
KOG0315|consensus	311		94.01
KOG1274|consensus	933		93.61
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	92.6
KOG1587|consensus	555		91.97
KOG0269|consensus	839		91.91
KOG0772|consensus	641		91.73
COG2319	466	FOG: WD40 repeat [General function prediction only	91.46
KOG0269|consensus	839		91.44
KOG0272|consensus	459		90.96
KOG1036|consensus	323		90.84
KOG0283|consensus	712		90.28
KOG0273|consensus	524		89.82
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	89.59
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	87.68
KOG0284|consensus	464		87.48
COG2319	466	FOG: WD40 repeat [General function prediction only	87.26
KOG2445|consensus	361		86.88
KOG1407|consensus	313		86.79
KOG0271|consensus	480		85.59
smart00461	106	WH1 WASP homology region 1. Region of the Wiskott-	85.42
KOG0280|consensus	339		84.82
KOG2445|consensus	361		84.7
KOG2048|consensus	691		84.56
KOG0281|consensus	499		84.17
KOG0289|consensus	506		83.95
KOG0274|consensus	537		83.7
KOG0263|consensus	707		83.66
KOG0973|consensus	942		83.6
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	83.41
KOG0772|consensus	641		82.64
KOG1408|consensus	1080		82.57
KOG0316|consensus	307		82.48
KOG0275|consensus	508		82.33
KOG0273|consensus	524		81.95
KOG0299|consensus	479		81.92
PRK01742	429	tolB translocation protein TolB; Provisional	81.61
PRK02889	427	tolB translocation protein TolB; Provisional	81.58
KOG0290|consensus	364		81.42
KOG0646|consensus	476		81.39
KOG0264|consensus	422		80.02

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.80  E-value=0.00012  Score=53.82  Aligned_cols=67  Identities=21%  Similarity=0.565  Sum_probs=49.8

Q ss_pred             cceeeeeeecCCccEEEE-ccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeec---CceEEe
Q psy9278          22 YQLFDCKWMPCSAKFIVL-GMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDF---EGKLQI   97 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~l-G~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf---~G~L~i   97 (98)
                      -.+.|+.|=|.+.+|+++ |..|+   .+++|+++   .+.+.++.+ ....+..|-..   .+.||+|+|   +|.|.+
T Consensus        60 ~~I~~~~WsP~g~~favi~g~~~~---~v~lyd~~---~~~i~~~~~-~~~n~i~wsP~---G~~l~~~g~~n~~G~l~~  129 (194)
T PF08662_consen   60 GPIHDVAWSPNGNEFAVIYGSMPA---KVTLYDVK---GKKIFSFGT-QPRNTISWSPD---GRFLVLAGFGNLNGDLEF  129 (194)
T ss_pred             CceEEEEECcCCCEEEEEEccCCc---ccEEEcCc---ccEeEeecC-CCceEEEECCC---CCEEEEEEccCCCcEEEE
Confidence            359999999999999766 87776   99999996   555666643 44556666433   578888765   577998


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       130 w  130 (194)
T PF08662_consen  130 W  130 (194)
T ss_pred             E
Confidence            8

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.50  E-value=0.0012  Score=44.56  Aligned_cols=70  Identities=17%  Similarity=0.424  Sum_probs=53.9

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      +..+..+.|-|. .++++.|.   ..|.|.+|++..++....-. .++.++.+..|-..   .+.|++|+.||.+.||
T Consensus       219 ~~~i~~~~~~~~-~~~~~~~~---~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~---~~~l~~~~~d~~i~iw  288 (289)
T cd00200         219 ENGVNSVAFSPD-GYLLASGS---EDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPD---GKRLASGSADGTIRIW  288 (289)
T ss_pred             CCceEEEEEcCC-CcEEEEEc---CCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCC---CCEEEEecCCCeEEec
Confidence            347788999998 66777664   58999999998765433333 45667899888655   4689999999999998

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.48  E-value=0.0011  Score=44.78  Aligned_cols=69  Identities=10%  Similarity=0.316  Sum_probs=52.8

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..+..+.|.|. .++++.|.   ..|.+.+|+++.++....-. .++..+.|..|-..   .+.|++|+.+|.+.+|
T Consensus        94 ~~i~~~~~~~~-~~~~~~~~---~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~---~~~l~~~~~~~~i~i~  162 (289)
T cd00200          94 SYVSSVAFSPD-GRILSSSS---RDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPD---GTFVASSSQDGTIKLW  162 (289)
T ss_pred             CcEEEEEEcCC-CCEEEEec---CCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCc---CCEEEEEcCCCcEEEE
Confidence            36788999998 56777774   47999999998654332222 36678999999765   6789999999999987

>PTZ00421 coronin; Provisional

Probab=97.29  E-value=0.0013  Score=55.25  Aligned_cols=73  Identities=14%  Similarity=0.277  Sum_probs=54.3

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCce-----eEEEEec-ccCceeeeecCCCCCCCceEEEeecCce
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP-----ELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGK   94 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l-----~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~   94 (98)
                      .-.+.+++|-|...++++.|+   ..|.|.||++..+.+     +.+..+. +...+.|..|-.+.  ...||+|+.||.
T Consensus        75 ~~~V~~v~fsP~d~~~LaSgS---~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~--~~iLaSgs~Dgt  149 (493)
T PTZ00421         75 EGPIIDVAFNPFDPQKLFTAS---EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA--MNVLASAGADMV  149 (493)
T ss_pred             CCCEEEEEEcCCCCCEEEEEe---CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC--CCEEEEEeCCCE
Confidence            356899999995555555553   579999999987654     2333443 67889999995543  458999999999


Q ss_pred             EEeC
Q psy9278          95 LQIW   98 (98)
Q Consensus        95 L~iw   98 (98)
                      +.||
T Consensus       150 VrIW  153 (493)
T PTZ00421        150 VNVW  153 (493)
T ss_pred             EEEE
Confidence            9998

>KOG1587|consensus

Probab=97.24  E-value=0.00043  Score=59.76  Aligned_cols=73  Identities=21%  Similarity=0.339  Sum_probs=56.7

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+| ++|++|=|...-..+++   +++|.|.||+|......-+....-...+.+.-|  .+...+.||+||..|++.+|
T Consensus       441 ~~~-v~~vaWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~--~s~~g~~lavGd~~G~~~~~  513 (555)
T KOG1587|consen  441 PDY-VTDVAWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVR--WSPNGKLLAVGDANGTTHIL  513 (555)
T ss_pred             cce-eeeeEEcCcCceEEEEE---cCCCceehhhhhccccCCcccccccccccceee--cCCCCcEEEEecCCCcEEEE
Confidence            344 89999999886666665   799999999999998777776654466666655  33447899999999998875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.14  E-value=0.0015  Score=35.34  Aligned_cols=35  Identities=20%  Similarity=0.588  Sum_probs=29.6

Q ss_pred             EEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          61 LVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        61 ~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ++..++ +..++.|..|-..   .+.||+|+.||.+.||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~---~~~~~s~~~D~~i~vw   38 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPD---GNFLASGSSDGTIRVW   38 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETT---SSEEEEEETTSEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecc---cccceeeCCCCEEEEE
Confidence            445555 7789999999877   6899999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0266|consensus

Probab=96.93  E-value=0.0048  Score=50.59  Aligned_cols=74  Identities=14%  Similarity=0.310  Sum_probs=56.9

Q ss_pred             hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      ..-+.-++|++|-|.+..++.-.    ..+.|+||.+..+...+-...-++..+=|+.|-.-+   +.++.|++||.+.|
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s----~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g---~~i~Sgs~D~tvri  272 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGS----DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG---NLLVSGSDDGTVRI  272 (456)
T ss_pred             cccccceeeeEECCCCcEEEEec----CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC---CEEEEecCCCcEEE
Confidence            34566789999999999555444    688999999944433333333699999999995544   78999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       273 W  273 (456)
T KOG0266|consen  273 W  273 (456)
T ss_pred             E
Confidence            9

>KOG0266|consensus

Probab=96.92  E-value=0.0047  Score=50.64  Aligned_cols=72  Identities=13%  Similarity=0.396  Sum_probs=59.6

Q ss_pred             cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ...--+|++.+.|.+ ++++-|   ...|.++||++..++....-+. +..++-+.-|...   .+.|++++.||.+.||
T Consensus       244 gH~~~v~~~~f~p~g-~~i~Sg---s~D~tvriWd~~~~~~~~~l~~-hs~~is~~~f~~d---~~~l~s~s~d~~i~vw  315 (456)
T KOG0266|consen  244 GHSTYVTSVAFSPDG-NLLVSG---SDDGTVRIWDVRTGECVRKLKG-HSDGISGLAFSPD---GNLLVSASYDGTIRVW  315 (456)
T ss_pred             CCCCceEEEEecCCC-CEEEEe---cCCCcEEEEeccCCeEEEeeec-cCCceEEEEECCC---CCEEEEcCCCccEEEE
Confidence            445567999999999 888877   4799999999999776665555 4558999988776   4899999999999998

>KOG0321|consensus

Probab=96.90  E-value=0.0013  Score=58.40  Aligned_cols=71  Identities=20%  Similarity=0.495  Sum_probs=59.8

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEE-EecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVK-TVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~-e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-+||++|||+-.+||.    +-|.-.++.|+++.+++.=.. -+++.-++|-.-|.  .+...-|+||.-||.+.||
T Consensus       101 nAifDl~wapge~~lVs----asGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~--~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen  101 NAIFDLKWAPGESLLVS----ASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFM--PTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             ceeEeeccCCCceeEEE----ccCCceeeeeeeccceeecceeecccccccchhhhc--cCCCcceeeccCCCcEEEE
Confidence            45899999999999994    558999999999999876554 66788888888774  4457789999999999999

>KOG0647|consensus

Probab=96.88  E-value=0.0054  Score=50.83  Aligned_cols=81  Identities=20%  Similarity=0.346  Sum_probs=65.7

Q ss_pred             ceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEee
Q psy9278          11 QIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGD   90 (98)
Q Consensus        11 QIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGd   90 (98)
                      |.+--..++++=.|+|+.|.-...|..+-|    ..|.+++|.|..+.+..+.  -+..++||+-|=...+ -..||||+
T Consensus        62 ~~~~ka~~~~~~PvL~v~WsddgskVf~g~----~Dk~~k~wDL~S~Q~~~v~--~Hd~pvkt~~wv~~~~-~~cl~TGS  134 (347)
T KOG0647|consen   62 QLVPKAQQSHDGPVLDVCWSDDGSKVFSGG----CDKQAKLWDLASGQVSQVA--AHDAPVKTCHWVPGMN-YQCLVTGS  134 (347)
T ss_pred             cccchhhhccCCCeEEEEEccCCceEEeec----cCCceEEEEccCCCeeeee--ecccceeEEEEecCCC-cceeEecc
Confidence            455567889999999999999997766554    6889999999999665554  4778899999854444 45899999


Q ss_pred             cCceEEeC
Q psy9278          91 FEGKLQIW   98 (98)
Q Consensus        91 f~G~L~iw   98 (98)
                      +|-.|.-|
T Consensus       135 WDKTlKfW  142 (347)
T KOG0647|consen  135 WDKTLKFW  142 (347)
T ss_pred             cccceeec
Confidence            99999988

>PTZ00421 coronin; Provisional

Probab=96.79  E-value=0.0077  Score=50.76  Aligned_cols=70  Identities=13%  Similarity=0.244  Sum_probs=55.7

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ...+..+.|-|....+++.|+   ..|.|+||+++.++.  +..++ +...+.|..|-..   .+.||+|+.||.+.||
T Consensus       125 ~~~V~~l~f~P~~~~iLaSgs---~DgtVrIWDl~tg~~--~~~l~~h~~~V~sla~spd---G~lLatgs~Dg~IrIw  195 (493)
T PTZ00421        125 TKKVGIVSFHPSAMNVLASAG---ADMVVNVWDVERGKA--VEVIKCHSDQITSLEWNLD---GSLLCTTSKDKKLNII  195 (493)
T ss_pred             CCcEEEEEeCcCCCCEEEEEe---CCCEEEEEECCCCeE--EEEEcCCCCceEEEEEECC---CCEEEEecCCCEEEEE
Confidence            466889999998877777663   478999999998853  34444 6778999999553   4689999999999998

>PLN00181 protein SPA1-RELATED; Provisional

Probab=96.65  E-value=0.0099  Score=51.38  Aligned_cols=70  Identities=17%  Similarity=0.338  Sum_probs=54.0

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..+.++.|.|...+.++.|+   ..|.|.||++..+++  +..+ .+..++.|..|-..  ....||+|+.||.+.||
T Consensus       533 ~~v~~l~~~~~~~~~las~~---~Dg~v~lWd~~~~~~--~~~~~~H~~~V~~l~~~p~--~~~~L~Sgs~Dg~v~iW  603 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSN---FEGVVQVWDVARSQL--VTEMKEHEKRVWSIDYSSA--DPTLLASGSDDGSVKLW  603 (793)
T ss_pred             CceeeEEeccCCCCEEEEEe---CCCeEEEEECCCCeE--EEEecCCCCCEEEEEEcCC--CCCEEEEEcCCCEEEEE
Confidence            35678899998777777665   379999999987754  3333 37788999999543  24689999999999998

>PLN00181 protein SPA1-RELATED; Provisional

Probab=96.64  E-value=0.0099  Score=51.39  Aligned_cols=70  Identities=11%  Similarity=0.293  Sum_probs=54.9

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..+..++|.|.+.+.++.|+   ..|.|.||++..++..+..-..+..++-+..|-    ....|++|+.||.+.||
T Consensus       618 ~~v~~v~~~~~~g~~latgs---~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~----~~~~lvs~s~D~~ikiW  687 (793)
T PLN00181        618 ANICCVQFPSESGRSLAFGS---ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV----DSSTLVSSSTDNTLKLW  687 (793)
T ss_pred             CCeEEEEEeCCCCCEEEEEe---CCCeEEEEECCCCCccceEecCCCCCEEEEEEe----CCCEEEEEECCCEEEEE
Confidence            35778899888788888875   678999999987764433334577788899883    24589999999999998

>KOG0296|consensus

Probab=96.61  E-value=0.0089  Score=50.35  Aligned_cols=68  Identities=22%  Similarity=0.478  Sum_probs=56.9

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+|-+.==| ++++|+-|.   |.-.--+|+++.|+ .+..-.+++.++-|+.|-..   ...|||||++|.|+||
T Consensus        66 svFavsl~P-~~~l~aTGG---gDD~AflW~~~~ge-~~~eltgHKDSVt~~~Fshd---gtlLATGdmsG~v~v~  133 (399)
T KOG0296|consen   66 SVFAVSLHP-NNNLVATGG---GDDLAFLWDISTGE-FAGELTGHKDSVTCCSFSHD---GTLLATGDMSGKVLVF  133 (399)
T ss_pred             ceEEEEeCC-CCceEEecC---CCceEEEEEccCCc-ceeEecCCCCceEEEEEccC---ceEEEecCCCccEEEE
Confidence            578888888 888888883   45667899999999 55566779999999999665   3699999999999997

>PTZ00420 coronin; Provisional

Probab=96.41  E-value=0.019  Score=49.74  Aligned_cols=70  Identities=10%  Similarity=0.181  Sum_probs=55.0

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-.+..+.|-|....+++.|+   ..|.|+||++..++.  +.+++.+..+.|..|-..   .+.||++.-||.+.||
T Consensus       125 ~~~V~sVaf~P~g~~iLaSgS---~DgtIrIWDl~tg~~--~~~i~~~~~V~Slswspd---G~lLat~s~D~~IrIw  194 (568)
T PTZ00420        125 KKKISIIDWNPMNYYIMCSSG---FDSFVNIWDIENEKR--AFQINMPKKLSSLKWNIK---GNLLSGTCVGKHMHII  194 (568)
T ss_pred             CCcEEEEEECCCCCeEEEEEe---CCCeEEEEECCCCcE--EEEEecCCcEEEEEECCC---CCEEEEEecCCEEEEE
Confidence            356889999998777665553   368999999998864  344556778999999654   4689999999999998

>PTZ00420 coronin; Provisional

Probab=96.34  E-value=0.022  Score=49.32  Aligned_cols=73  Identities=15%  Similarity=0.357  Sum_probs=52.4

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCce--e----EEEEec-ccCceeeeecCCCCCCCceEEEeecCc
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP--E----LVKTVE-KPNAFKCGTFNASPLSERYLATGDFEG   93 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l--~----~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G   93 (98)
                      .-.+.++.|-|....+++.|+   ..|.|.||++..+..  .    .+..+. +...+.|..|-..  ....||+|+.||
T Consensus        74 ~~~V~~lafsP~~~~lLASgS---~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~--g~~iLaSgS~Dg  148 (568)
T PTZ00420         74 TSSILDLQFNPCFSEILASGS---EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM--NYYIMCSSGFDS  148 (568)
T ss_pred             CCCEEEEEEcCCCCCEEEEEe---CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCC--CCeEEEEEeCCC
Confidence            457899999998555555553   688999999976432  1    122222 5678999999654  345679999999


Q ss_pred             eEEeC
Q psy9278          94 KLQIW   98 (98)
Q Consensus        94 ~L~iw   98 (98)
                      .+.||
T Consensus       149 tIrIW  153 (568)
T PTZ00420        149 FVNIW  153 (568)
T ss_pred             eEEEE
Confidence            99998

>KOG0645|consensus

Probab=96.32  E-value=0.023  Score=46.62  Aligned_cols=76  Identities=25%  Similarity=0.479  Sum_probs=64.1

Q ss_pred             hhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCce
Q psy9278          16 VEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGK   94 (98)
Q Consensus        16 i~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~   94 (98)
                      +.....=|+=.+.|=|+-. +++.|++   .++..||+=.+++++++.-+| +.+-+||..|-+|.   ++|||-+-|-+
T Consensus        56 ld~~hkrsVRsvAwsp~g~-~La~aSF---D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG---~~LATCSRDKS  128 (312)
T KOG0645|consen   56 LDDGHKRSVRSVAWSPHGR-YLASASF---DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG---NYLATCSRDKS  128 (312)
T ss_pred             ccccchheeeeeeecCCCc-EEEEeec---cceEEEeecCCCceeEEeeeeccccceeEEEEcCCC---CEEEEeeCCCe
Confidence            3334445677889999876 8888876   467889999999999999999 99999999998885   89999999998


Q ss_pred             EEeC
Q psy9278          95 LQIW   98 (98)
Q Consensus        95 L~iw   98 (98)
                      +=||
T Consensus       129 VWiW  132 (312)
T KOG0645|consen  129 VWIW  132 (312)
T ss_pred             EEEE
Confidence            8777

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=96.29  E-value=0.025  Score=41.55  Aligned_cols=62  Identities=23%  Similarity=0.400  Sum_probs=44.5

Q ss_pred             eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecC
Q psy9278          24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFE   92 (98)
Q Consensus        24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~   92 (98)
                      ...++|=|.. +++++|..-+-.|.|++|+++  +.+.+.+.|++... +..|-+   .-|+|||..-.
T Consensus       103 ~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~--~~~~i~~~~~~~~t-~~~WsP---dGr~~~ta~t~  164 (194)
T PF08662_consen  103 RNTISWSPDG-RFLVLAGFGNLNGDLEFWDVR--KKKKISTFEHSDAT-DVEWSP---DGRYLATATTS  164 (194)
T ss_pred             ceEEEECCCC-CEEEEEEccCCCcEEEEEECC--CCEEeeccccCcEE-EEEEcC---CCCEEEEEEec
Confidence            3568999995 566666666778999999998  77778888877643 334433   35888887643

>KOG0277|consensus

Probab=96.22  E-value=0.022  Score=46.59  Aligned_cols=84  Identities=14%  Similarity=0.400  Sum_probs=66.3

Q ss_pred             CCccceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCce
Q psy9278           7 LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERY   85 (98)
Q Consensus         7 ~~kPQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~   85 (98)
                      +++|+=+.- -+.-++-+|.++|=|..+.++.   ...|.|.+++|++......++  +| +..-+-||-|  |....+-
T Consensus       134 ~~r~~Sv~T-f~gh~~~Iy~a~~sp~~~nlfa---s~Sgd~~l~lwdvr~~gk~~~--i~ah~~Eil~cdw--~ky~~~v  205 (311)
T KOG0277|consen  134 PNRPNSVQT-FNGHNSCIYQAAFSPHIPNLFA---SASGDGTLRLWDVRSPGKFMS--IEAHNSEILCCDW--SKYNHNV  205 (311)
T ss_pred             CCCCcceEe-ecCCccEEEEEecCCCCCCeEE---EccCCceEEEEEecCCCceeE--EEeccceeEeecc--cccCCcE
Confidence            445554443 3447899999999999999885   567999999999987766666  55 3458899988  4555889


Q ss_pred             EEEeecCceEEeC
Q psy9278          86 LATGDFEGKLQIW   98 (98)
Q Consensus        86 lAtGdf~G~L~iw   98 (98)
                      ||||+-|+.+.+|
T Consensus       206 l~Tg~vd~~vr~w  218 (311)
T KOG0277|consen  206 LATGGVDNLVRGW  218 (311)
T ss_pred             EEecCCCceEEEE
Confidence            9999999999988

>KOG0310|consensus

Probab=96.11  E-value=0.027  Score=48.64  Aligned_cols=80  Identities=18%  Similarity=0.427  Sum_probs=61.4

Q ss_pred             ehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecC
Q psy9278          13 ICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFE   92 (98)
Q Consensus        13 Iehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~   92 (98)
                      |--.-+....+++.+|.=|+--...+.|+   ..+++++|.+++..+ .....-+..-++|+.+  ++-...-++||++|
T Consensus       102 iLR~~~ah~apv~~~~f~~~d~t~l~s~s---Dd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~--~~~~~hivvtGsYD  175 (487)
T KOG0310|consen  102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGS---DDKVVKYWDLSTAYV-QAELSGHTDYVRCGDI--SPANDHIVVTGSYD  175 (487)
T ss_pred             HHHHHhhccCceeEEEecccCCeEEEecC---CCceEEEEEcCCcEE-EEEecCCcceeEeecc--ccCCCeEEEecCCC
Confidence            33334456678888999999999888884   678999999999996 3334448999999977  22223358999999


Q ss_pred             ceEEeC
Q psy9278          93 GKLQIW   98 (98)
Q Consensus        93 G~L~iw   98 (98)
                      |.+.+|
T Consensus       176 g~vrl~  181 (487)
T KOG0310|consen  176 GKVRLW  181 (487)
T ss_pred             ceEEEE
Confidence            999998

>KOG0645|consensus

Probab=96.06  E-value=0.041  Score=45.20  Aligned_cols=82  Identities=12%  Similarity=0.298  Sum_probs=58.6

Q ss_pred             ceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEec-CCceeEEEEec--ccCceeeeecCCCCCCCceEE
Q psy9278          11 QIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN-DGQPELVKTVE--KPNAFKCGTFNASPLSERYLA   87 (98)
Q Consensus        11 QIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~-~~~l~~~~e~e--~~~~~KC~TFgaSsl~~r~lA   87 (98)
                      +|.++..+...=.+.-+.|=|.+-+++.-|+   +.-.|+||+++ .+..++..-+.  ++++++-..|   +...|+||
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg---~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw---sp~g~~La   77 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCG---TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW---SPHGRYLA   77 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeec---CCceEEEEecCCCCcEEEEEeccccchheeeeeee---cCCCcEEE
Confidence            4444444444447888999999766554443   45589999998 55676665443  7888887754   44568999


Q ss_pred             EeecCceEEeC
Q psy9278          88 TGDFEGKLQIW   98 (98)
Q Consensus        88 tGdf~G~L~iw   98 (98)
                      +|+||+...||
T Consensus        78 ~aSFD~t~~Iw   88 (312)
T KOG0645|consen   78 SASFDATVVIW   88 (312)
T ss_pred             EeeccceEEEe
Confidence            99999999998

>KOG0294|consensus

Probab=95.46  E-value=0.027  Score=47.01  Aligned_cols=61  Identities=23%  Similarity=0.543  Sum_probs=51.5

Q ss_pred             eeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          27 CKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        27 ~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ++|-|++-+||++|.     -.|.||+++.-  ++..|+|.|.-+=|.||+..+    .|++|-=|+.+.+|
T Consensus       174 v~w~~~Gd~F~v~~~-----~~i~i~q~d~A--~v~~~i~~~~r~l~~~~l~~~----~L~vG~d~~~i~~~  234 (362)
T KOG0294|consen  174 VSWSPQGDHFVVSGR-----NKIDIYQLDNA--SVFREIENPKRILCATFLDGS----ELLVGGDNEWISLK  234 (362)
T ss_pred             eEEcCCCCEEEEEec-----cEEEEEecccH--hHhhhhhccccceeeeecCCc----eEEEecCCceEEEe
Confidence            999999999999983     46899998765  456788888999999998876    89999888887765

>KOG0277|consensus

Probab=95.45  E-value=0.026  Score=46.24  Aligned_cols=84  Identities=17%  Similarity=0.382  Sum_probs=59.0

Q ss_pred             cceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEe
Q psy9278          10 PQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATG   89 (98)
Q Consensus        10 PQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtG   89 (98)
                      +-|-|-..--.+=-+||+.|=|.-+..|+.   +.|.|.||||.+....--+.+=-|+++-+--+-.  +....|++.++
T Consensus        49 ~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~---a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdw--n~~~r~~~lts  123 (311)
T KOG0277|consen   49 KGIQECQSYDTEDGLFDVAWSENHENQVIA---ASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDW--NTVRRRIFLTS  123 (311)
T ss_pred             CCeEEEEeeecccceeEeeecCCCcceEEE---EecCceEEEeccCCCCcchhHHHhhhhheEEecc--ccccceeEEee
Confidence            334444444445568999999999998865   5699999999987665444443444444433333  34457899999


Q ss_pred             ecCceEEeC
Q psy9278          90 DFEGKLQIW   98 (98)
Q Consensus        90 df~G~L~iw   98 (98)
                      +.||.+.||
T Consensus       124 SWD~TiKLW  132 (311)
T KOG0277|consen  124 SWDGTIKLW  132 (311)
T ss_pred             ccCCceEee
Confidence            999999999

>KOG2055|consensus

Probab=95.22  E-value=0.078  Score=46.01  Aligned_cols=72  Identities=22%  Similarity=0.386  Sum_probs=58.3

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ++=.+=|..|--.|-++++.|    |+|-+-||+|+..  .++...--..++ |+|=-+.|++.++||||+=.|-++||
T Consensus       343 ieG~v~~~~fsSdsk~l~~~~----~~GeV~v~nl~~~--~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIY  414 (514)
T KOG2055|consen  343 IEGVVSDFTFSSDSKELLASG----GTGEVYVWNLRQN--SCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIY  414 (514)
T ss_pred             eccEEeeEEEecCCcEEEEEc----CCceEEEEecCCc--ceEEEEeecCcc-ceeeeeecCCCceEEeccCcceEEEe
Confidence            344567888999999999999    8997777887777  566666444444 88888999999999999999999987

>KOG0264|consensus

Probab=95.02  E-value=0.048  Score=46.41  Aligned_cols=74  Identities=22%  Similarity=0.466  Sum_probs=60.3

Q ss_pred             cCCcceeeeeeecCCcc-EEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278          19 SLDYQLFDCKWMPCSAK-FIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQ   96 (98)
Q Consensus        19 sl~yT~fD~kWIP~SAr-fV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~   96 (98)
                      ...=.+-|++|-|..+. |-.+|    ..|.|.||.+..+..+..+..+ +...+-|..|...+  +--||||+=||.|.
T Consensus       225 ~h~~~VeDV~~h~~h~~lF~sv~----dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~--~~ilAT~S~D~tV~  298 (422)
T KOG0264|consen  225 GHEDVVEDVAWHPLHEDLFGSVG----DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN--EFILATGSADKTVA  298 (422)
T ss_pred             cCCcceehhhccccchhhheeec----CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC--CceEEeccCCCcEE
Confidence            44456889999999887 45566    7899999999866555555555 68999999997776  78899999999999


Q ss_pred             eC
Q psy9278          97 IW   98 (98)
Q Consensus        97 iw   98 (98)
                      +|
T Consensus       299 Lw  300 (422)
T KOG0264|consen  299 LW  300 (422)
T ss_pred             Ee
Confidence            98

>smart00320 WD40 WD40 repeats

Probab=94.98  E-value=0.14  Score=24.09  Aligned_cols=29  Identities=21%  Similarity=0.595  Sum_probs=24.0

Q ss_pred             ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        67 ~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      +...+.|..|....   +.+++|..||.+.+|
T Consensus        11 ~~~~i~~~~~~~~~---~~~~~~~~d~~~~~~   39 (40)
T smart00320       11 HTGPVTSVAFSPDG---KYLASASDDGTIKLW   39 (40)
T ss_pred             cCCceeEEEECCCC---CEEEEecCCCeEEEc
Confidence            56678899886543   689999999999998

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0318|consensus

Probab=94.80  E-value=0.095  Score=46.17  Aligned_cols=72  Identities=21%  Similarity=0.367  Sum_probs=51.8

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCce-eEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP-ELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l-~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      +-|.+=.+.==|. -.+|++|.   -.|.++||.|++++| +..+..|++-++-|..|-..   ..+||+||..+++-+|
T Consensus       442 ~~y~~s~vAv~~~-~~~vaVGG---~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd---~~yla~~Da~rkvv~y  514 (603)
T KOG0318|consen  442 IGYESSAVAVSPD-GSEVAVGG---QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPD---GAYLAAGDASRKVVLY  514 (603)
T ss_pred             cccccceEEEcCC-CCEEEEec---ccceEEEEEecCCcccceeeeecccCCceEEEECCC---CcEEEEeccCCcEEEE
Confidence            3344433333333 35666762   257799999999985 44467889999999988544   5799999999999876

>KOG2106|consensus

Probab=94.70  E-value=0.16  Score=44.79  Aligned_cols=71  Identities=24%  Similarity=0.433  Sum_probs=59.6

Q ss_pred             cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE----ecccCceeeeecCCCCCCCceEEEeecCce
Q psy9278          19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT----VEKPNAFKCGTFNASPLSERYLATGDFEGK   94 (98)
Q Consensus        19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e----~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~   94 (98)
                      ..|--+|.++|-|.-+.+++.=    |+|-|..|.+.++.|..-..    -|| +-+-|.+|+.+.    ...|||=+|+
T Consensus       198 ~sne~v~~a~FHPtd~nliit~----Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~eng----dviTgDS~G~  268 (626)
T KOG2106|consen  198 TSNEVVFLATFHPTDPNLIITC----GKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLENG----DVITGDSGGN  268 (626)
T ss_pred             eccceEEEEEeccCCCcEEEEe----CCceEEEEEccCCceEEEeeccccccc-eEEEEEEEcCCC----CEEeecCCce
Confidence            4566789999999999988765    89999999999998776552    345 778899997764    8999999999


Q ss_pred             EEeC
Q psy9278          95 LQIW   98 (98)
Q Consensus        95 L~iw   98 (98)
                      |.||
T Consensus       269 i~Iw  272 (626)
T KOG2106|consen  269 ILIW  272 (626)
T ss_pred             EEEE
Confidence            9999

>KOG0284|consensus

Probab=94.34  E-value=0.059  Score=46.23  Aligned_cols=77  Identities=10%  Similarity=0.302  Sum_probs=59.5

Q ss_pred             hhhh-hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecC
Q psy9278          14 CLVE-KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFE   92 (98)
Q Consensus        14 ehi~-ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~   92 (98)
                      +|.. ..+.--|++++|.|.-.|+++=    ..+|.+.+|+...=..+.+.. +++.+++|-+.-.+   .+.+.+||=+
T Consensus        88 ~h~s~NKvkc~V~~v~WtPeGRRLltg----s~SGEFtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~---g~wmiSgD~g  159 (464)
T KOG0284|consen   88 VHTSSNKVKCPVNVVRWTPEGRRLLTG----SQSGEFTLWNGTSFNFETILQ-AHDSPVRTMKWSHN---GTWMISGDKG  159 (464)
T ss_pred             EeccccccccceeeEEEcCCCceeEee----cccccEEEecCceeeHHHHhh-hhcccceeEEEccC---CCEEEEcCCC
Confidence            3444 4566778999999999998853    379999999974333333332 48999999988666   4799999999


Q ss_pred             ceEEeC
Q psy9278          93 GKLQIW   98 (98)
Q Consensus        93 G~L~iw   98 (98)
                      |-+.+|
T Consensus       160 G~iKyW  165 (464)
T KOG0284|consen  160 GMIKYW  165 (464)
T ss_pred             ceEEec
Confidence            999998

>KOG0315|consensus

Probab=94.01  E-value=0.076  Score=43.49  Aligned_cols=49  Identities=12%  Similarity=0.459  Sum_probs=44.0

Q ss_pred             CcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          45 GTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        45 gtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      -.|+++||+|..  +.+.++.+.+.++-|.---.+   +.+|..||-+|++.||
T Consensus       103 eDgt~kIWdlR~--~~~qR~~~~~spVn~vvlhpn---QteLis~dqsg~irvW  151 (311)
T KOG0315|consen  103 EDGTVKIWDLRS--LSCQRNYQHNSPVNTVVLHPN---QTELISGDQSGNIRVW  151 (311)
T ss_pred             CCceEEEEeccC--cccchhccCCCCcceEEecCC---cceEEeecCCCcEEEE
Confidence            489999999987  899999999999999877555   6899999999999999

>KOG1274|consensus

Probab=93.61  E-value=0.21  Score=46.13  Aligned_cols=65  Identities=14%  Similarity=0.418  Sum_probs=53.5

Q ss_pred             eeeecCCccEEEEccccCCcccEEEEEecCCceeE-EEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          27 CKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPEL-VKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        27 ~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~-~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..|=|.+-.|.+.+    -.+.+.+|.-++.++.- ++.-+....|-|.+|-..   -.+||+|+.+|.+.||
T Consensus       194 ~aW~Pk~g~la~~~----~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn---G~YiAAs~~~g~I~vW  259 (933)
T KOG1274|consen  194 LAWHPKGGTLAVPP----VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN---GKYIAASTLDGQILVW  259 (933)
T ss_pred             eeecCCCCeEEeec----cCCeEEEEccCCceeheeecccccccceEEEEEcCC---CcEEeeeccCCcEEEE
Confidence            57999999999888    78999999998887554 344445555999999665   3589999999999999

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=92.60  E-value=0.85  Score=32.39  Aligned_cols=66  Identities=14%  Similarity=0.155  Sum_probs=41.9

Q ss_pred             eeeeeeecCCcc-EEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEe-ecCceEEeC
Q psy9278          24 LFDCKWMPCSAK-FIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATG-DFEGKLQIW   98 (98)
Q Consensus        24 ~fD~kWIP~SAr-fV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtG-df~G~L~iw   98 (98)
                      +.++.|-|..-. |+..+    +.+.+.||+++.+++.  ........+.|..|-+.   ...|+++ ..+|.|.||
T Consensus       209 ~~~i~~s~dg~~~~~~~~----~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~---g~~l~~~~~~~~~i~v~  276 (300)
T TIGR03866       209 PVGIKLTKDGKTAFVALG----PANRVAVVDAKTYEVL--DYLLVGQRVWQLAFTPD---EKYLLTTNGVSNDVSVI  276 (300)
T ss_pred             ccceEECCCCCEEEEEcC----CCCeEEEEECCCCcEE--EEEEeCCCcceEEECCC---CCEEEEEcCCCCeEEEE
Confidence            445666666654 33333    2457999999877654  33344556778887443   3456665 679999998

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1587|consensus

Probab=91.97  E-value=0.58  Score=40.79  Aligned_cols=81  Identities=20%  Similarity=0.333  Sum_probs=59.4

Q ss_pred             hhhhcCCcceeeeeeecCCc---cEEE------------EccccCCc-ccEEEEEecCCceeEEEEecccCceeeeecCC
Q psy9278          15 LVEKSLDYQLFDCKWMPCSA---KFIV------------LGMKPKGT-GSIQMYEINDGQPELVKTVEKPNAFKCGTFNA   78 (98)
Q Consensus        15 hi~ksl~yT~fD~kWIP~SA---rfV~------------lG~~prgt-G~iqIyeL~~~~l~~~~e~e~~~~~KC~TFga   78 (98)
                      |..-+..-.++|++|-|...   .+.+            .+..++-- +.+-||++... .+.-...+-+.++-|..|-.
T Consensus       174 ~~~~~~~~~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p  252 (555)
T KOG1587|consen  174 HDPLSPKRQVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNP-NTPELVLESPSEVTCLKFCP  252 (555)
T ss_pred             ccccchhcceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCC-CCceEEEecCCceeEEEecc
Confidence            34446677889999999988   2221            12222222 48999999777 66667777889999999944


Q ss_pred             CCCCCceEEEeecCceEEeC
Q psy9278          79 SPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        79 Ssl~~r~lAtGdf~G~L~iw   98 (98)
                      .  ..-.||.|.++|.+-+|
T Consensus       253 ~--~p~ll~gG~y~GqV~lW  270 (555)
T KOG1587|consen  253 F--DPNLLAGGCYNGQVVLW  270 (555)
T ss_pred             C--CcceEEeeccCceEEEE
Confidence            4  46789999999999998

>KOG0269|consensus

Probab=91.91  E-value=0.12  Score=47.01  Aligned_cols=76  Identities=20%  Similarity=0.340  Sum_probs=57.9

Q ss_pred             hhcCCcceeeeeeecCCcc-EEEEccccCCcccEEEEEecC--CceeEEEEecccCceeeeecCCCCCCCceEEEeecCc
Q psy9278          17 EKSLDYQLFDCKWMPCSAK-FIVLGMKPKGTGSIQMYEIND--GQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEG   93 (98)
Q Consensus        17 ~ksl~yT~fD~kWIP~SAr-fV~lG~~prgtG~iqIyeL~~--~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G   93 (98)
                      ..++.|+.-||||= +=++ +++   .....|+|.||+|++  .+-.+..=.|+.+++-|-.|-+.  ....|.+|+-||
T Consensus        83 kqn~~~S~~DVkW~-~~~~NlIA---T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~t--ep~iliSGSQDg  156 (839)
T KOG0269|consen   83 KQNKFYSAADVKWG-QLYSNLIA---TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHST--EPNILISGSQDG  156 (839)
T ss_pred             ccceeeehhhcccc-cchhhhhe---eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccC--CccEEEecCCCc
Confidence            45788999999997 4333 332   234689999999999  34444456678889999999554  467899999999


Q ss_pred             eEEeC
Q psy9278          94 KLQIW   98 (98)
Q Consensus        94 ~L~iw   98 (98)
                      .+.+|
T Consensus       157 ~vK~~  161 (839)
T KOG0269|consen  157 TVKCW  161 (839)
T ss_pred             eEEEE
Confidence            99988

>KOG0772|consensus

Probab=91.73  E-value=0.42  Score=42.43  Aligned_cols=75  Identities=21%  Similarity=0.428  Sum_probs=54.6

Q ss_pred             hhcCCcceeeeeeecCCc-cEEEEccccCCcccEEEEEecCCc--eeEEEEe---cccCceeeeecCCCCCCCceEEEee
Q psy9278          17 EKSLDYQLFDCKWMPCSA-KFIVLGMKPKGTGSIQMYEINDGQ--PELVKTV---EKPNAFKCGTFNASPLSERYLATGD   90 (98)
Q Consensus        17 ~ksl~yT~fD~kWIP~SA-rfV~lG~~prgtG~iqIyeL~~~~--l~~~~e~---e~~~~~KC~TFgaSsl~~r~lAtGd   90 (98)
                      .|...-++.+.-|=|.+. -|++.+    -.|.++||++++-+  +++++-.   -+..+.--|+|  +.-..+ ||+|-
T Consensus       264 TKGHia~lt~g~whP~~k~~FlT~s----~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~-iAagc  336 (641)
T KOG0772|consen  264 TKGHIAELTCGCWHPDNKEEFLTCS----YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKL-IAAGC  336 (641)
T ss_pred             cCCceeeeeccccccCcccceEEec----CCCcEEEEecCCchhheeEEeeccCCCcccCceeeec--CCCcch-hhhcc
Confidence            455666788999999875 466666    78999999998875  5555422   14445567777  333344 99999


Q ss_pred             cCceEEeC
Q psy9278          91 FEGKLQIW   98 (98)
Q Consensus        91 f~G~L~iw   98 (98)
                      .||++++|
T Consensus       337 ~DGSIQ~W  344 (641)
T KOG0772|consen  337 LDGSIQIW  344 (641)
T ss_pred             cCCceeee
Confidence            99999999

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=91.46  E-value=2  Score=29.72  Aligned_cols=71  Identities=17%  Similarity=0.398  Sum_probs=48.2

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..+.+++|.|.... ++.+..  ..|.+++|++..++....-.. +...+.|..|-  ......+++++.||.+.+|
T Consensus       156 ~~v~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~w  226 (466)
T COG2319         156 ESVTSLAFSPDGKL-LASGSS--LDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFS--PDGGLLIASGSSDGTIRLW  226 (466)
T ss_pred             ccEEEEEECCCCCE-EEecCC--CCCceEEEEcCCCceEEeecc-CCCceEEEEEc--CCcceEEEEecCCCcEEEE
Confidence            34558999999884 444433  799999999987443333322 67788899887  2122345555999999887

>KOG0269|consensus

Probab=91.44  E-value=0.26  Score=44.96  Aligned_cols=69  Identities=22%  Similarity=0.460  Sum_probs=53.9

Q ss_pred             ceeeeeeecCCc-cEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          23 QLFDCKWMPCSA-KFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        23 T~fD~kWIP~SA-rfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+=||||.|.-- +|+..    --.|++|.|+|.+.+.=..+-.-+-.++=|+..-.   ..-.||||.-|+.+.||
T Consensus       178 SiRDV~fsp~~~~~F~s~----~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP---nr~~lATGGRDK~vkiW  247 (839)
T KOG0269|consen  178 SIRDVKFSPGYGNKFASI----HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP---NREWLATGGRDKMVKIW  247 (839)
T ss_pred             hhhceeeccCCCceEEEe----cCCceEEEeeccCchhHHHHhhcccCceEEEeecC---CCceeeecCCCccEEEE
Confidence            356999999874 44433    36899999999988655555555778899998766   35689999999999999

>KOG0272|consensus

Probab=90.96  E-value=0.34  Score=41.70  Aligned_cols=61  Identities=13%  Similarity=0.360  Sum_probs=45.4

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCce-e-------EEEEecccCceeeeecCCCCCCCceEEEeecCce
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP-E-------LVKTVEKPNAFKCGTFNASPLSERYLATGDFEGK   94 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l-~-------~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~   94 (98)
                      .+|++.|-|.---+.+-|    +.+.++||.|...+. .       +|+.+....  -|         .+.|+|++||+.
T Consensus       347 ~I~~V~fsPNGy~lATgs----~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p--~~---------g~fL~TasyD~t  411 (459)
T KOG0272|consen  347 EILSVAFSPNGYHLATGS----SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP--QE---------GYFLVTASYDNT  411 (459)
T ss_pred             ceeeEeECCCceEEeecC----CCCcEEEeeecccccceecccccchhhheEecc--cC---------CeEEEEcccCcc
Confidence            589999999998888776    789999999987643 2       222222111  23         357999999999


Q ss_pred             EEeC
Q psy9278          95 LQIW   98 (98)
Q Consensus        95 L~iw   98 (98)
                      +.||
T Consensus       412 ~kiW  415 (459)
T KOG0272|consen  412 VKIW  415 (459)
T ss_pred             eeee
Confidence            9999

>KOG1036|consensus

Probab=90.84  E-value=0.69  Score=38.35  Aligned_cols=66  Identities=18%  Similarity=0.381  Sum_probs=51.4

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ++=++|..|.|..+++--    =.|.+.+|+....++  ..+..+..|+=||.|-.    +-++++|+.||.++.+
T Consensus        15 ~IS~v~f~~~~~~LLvss----WDgslrlYdv~~~~l--~~~~~~~~plL~c~F~d----~~~~~~G~~dg~vr~~   80 (323)
T KOG1036|consen   15 GISSVKFSPSSSDLLVSS----WDGSLRLYDVPANSL--KLKFKHGAPLLDCAFAD----ESTIVTGGLDGQVRRY   80 (323)
T ss_pred             ceeeEEEcCcCCcEEEEe----ccCcEEEEeccchhh--hhheecCCceeeeeccC----CceEEEeccCceEEEE
Confidence            345688888777766533    689999999988844  44666788899999976    4489999999999753

>KOG0283|consensus

Probab=90.28  E-value=0.44  Score=42.99  Aligned_cols=47  Identities=23%  Similarity=0.690  Sum_probs=39.3

Q ss_pred             cEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          48 SIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        48 ~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ++++|.+.  .=++++-..++.=+-|.-|-.-.  +|+|+.|++||+++||
T Consensus       391 TVRLWh~~--~~~CL~~F~HndfVTcVaFnPvD--DryFiSGSLD~KvRiW  437 (712)
T KOG0283|consen  391 TVRLWHPG--RKECLKVFSHNDFVTCVAFNPVD--DRYFISGSLDGKVRLW  437 (712)
T ss_pred             cEEeecCC--CcceeeEEecCCeeEEEEecccC--CCcEeecccccceEEe
Confidence            56778775  44577778899999999996555  9999999999999999

>KOG0273|consensus

Probab=89.82  E-value=1.5  Score=38.45  Aligned_cols=68  Identities=22%  Similarity=0.628  Sum_probs=38.4

Q ss_pred             cceeeeeeecCCc---------cEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeec
Q psy9278          22 YQLFDCKWMPCSA---------KFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDF   91 (98)
Q Consensus        22 yT~fD~kWIP~SA---------rfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf   91 (98)
                      =.+|-.||.|.-.         .++..+    -.+.+++|+...|.-  +..+ .+..++--..|-.   .-|+||+|+|
T Consensus       402 kei~t~~wsp~g~v~~n~~~~~~l~sas----~dstV~lwdv~~gv~--i~~f~kH~~pVysvafS~---~g~ylAsGs~  472 (524)
T KOG0273|consen  402 KEIYTIKWSPTGPVTSNPNMNLMLASAS----FDSTVKLWDVESGVP--IHTLMKHQEPVYSVAFSP---NGRYLASGSL  472 (524)
T ss_pred             cceeeEeecCCCCccCCCcCCceEEEee----cCCeEEEEEccCCce--eEeeccCCCceEEEEecC---CCcEEEecCC
Confidence            3478889999642         111111    245555555544421  1112 2333443344433   3689999999


Q ss_pred             CceEEeC
Q psy9278          92 EGKLQIW   98 (98)
Q Consensus        92 ~G~L~iw   98 (98)
                      ||.+.||
T Consensus       473 dg~V~iw  479 (524)
T KOG0273|consen  473 DGCVHIW  479 (524)
T ss_pred             CCeeEec
Confidence            9999999

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=89.59  E-value=2.4  Score=30.03  Aligned_cols=69  Identities=9%  Similarity=0.044  Sum_probs=42.6

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+..+.|-|....+++.+.   ..|.|.+|++..+++.  .++.......+..|  +.-.++-++++..+|.|.+|
T Consensus        32 ~~~~l~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~--~~~g~~l~~~~~~~~~l~~~  100 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCAS---DSDTIQVIDLATGEVI--GTLPSGPDPELFAL--HPNGKILYIANEDDNLVTVI  100 (300)
T ss_pred             CCCceEECCCCCEEEEEEC---CCCeEEEEECCCCcEE--EeccCCCCccEEEE--CCCCCEEEEEcCCCCeEEEE
Confidence            3567889998877666653   5788999999887653  33332222334444  22223334556678888876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.68  E-value=1.4  Score=23.22  Aligned_cols=30  Identities=13%  Similarity=0.315  Sum_probs=23.0

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEE
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYE   53 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIye   53 (98)
                      -.-.++++.|-|....|++.|    ..|.|+||+
T Consensus        10 h~~~i~~i~~~~~~~~~~s~~----~D~~i~vwd   39 (39)
T PF00400_consen   10 HSSSINSIAWSPDGNFLASGS----SDGTIRVWD   39 (39)
T ss_dssp             SSSSEEEEEEETTSSEEEEEE----TTSEEEEEE
T ss_pred             CCCcEEEEEEecccccceeeC----CCCEEEEEC
Confidence            345689999999966666666    678888885

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0284|consensus

Probab=87.48  E-value=0.57  Score=40.37  Aligned_cols=77  Identities=17%  Similarity=0.364  Sum_probs=61.4

Q ss_pred             hhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCc
Q psy9278          14 CLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEG   93 (98)
Q Consensus        14 ehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G   93 (98)
                      |-|.+..++-|=-.+|-+..- +.+-|   .+-|.|++|+.+-+.++.++-- +.-+|+|..|...   +-.++|-+=||
T Consensus       131 EtilQaHDs~Vr~m~ws~~g~-wmiSg---D~gG~iKyWqpnmnnVk~~~ah-h~eaIRdlafSpn---DskF~t~SdDg  202 (464)
T KOG0284|consen  131 ETILQAHDSPVRTMKWSHNGT-WMISG---DKGGMIKYWQPNMNNVKIIQAH-HAEAIRDLAFSPN---DSKFLTCSDDG  202 (464)
T ss_pred             HHHhhhhcccceeEEEccCCC-EEEEc---CCCceEEecccchhhhHHhhHh-hhhhhheeccCCC---CceeEEecCCC
Confidence            556777788888899998765 45544   6789999999998877666544 4568999999774   56899999999


Q ss_pred             eEEeC
Q psy9278          94 KLQIW   98 (98)
Q Consensus        94 ~L~iw   98 (98)
                      .|.||
T Consensus       203 ~ikiW  207 (464)
T KOG0284|consen  203 TIKIW  207 (464)
T ss_pred             eEEEE
Confidence            99998

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=87.26  E-value=7.1  Score=27.03  Aligned_cols=71  Identities=15%  Similarity=0.440  Sum_probs=44.9

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+..+.++.|.|... +++++  ....|.|.+|+++.+++... ..+ +.... -..|-...   ..++++..++.+.+|
T Consensus       197 ~~~~v~~~~~~~~~~-~~~~~--~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~-~~~~~~~~---~~~~~~~~d~~~~~~  268 (466)
T COG2319         197 HTDPVSSLAFSPDGG-LLIAS--GSSDGTIRLWDLSTGKLLRS-TLSGHSDSV-VSSFSPDG---SLLASGSSDGTIRLW  268 (466)
T ss_pred             CCCceEEEEEcCCcc-eEEEE--ecCCCcEEEEECCCCcEEee-ecCCCCcce-eEeECCCC---CEEEEecCCCcEEEe
Confidence            456789999997776 45555  55678888997764443332 222 22221 22343332   578899999999987

>KOG2445|consensus

Probab=86.88  E-value=4.6  Score=33.99  Aligned_cols=70  Identities=7%  Similarity=0.212  Sum_probs=52.4

Q ss_pred             eeeeeeecCCccEEEEccccCCcccEEEEEecCC--ceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDG--QPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~--~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ++|+-|=+---|.++.-    ..+.+.||+++++  +-.+.++.+ +..+|==.+......+ +-+||-+||+.+.||
T Consensus        16 ihdVs~D~~GRRmAtCS----sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfG-qvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen   16 IHDVSFDFYGRRMATCS----SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFG-QVVATCSYDRTVSIW   88 (361)
T ss_pred             eeeeeecccCceeeecc----CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcccc-ceEEEEecCCceeee
Confidence            67788878777877765    6889999998554  677777776 5555555555544444 489999999999999

>KOG1407|consensus

Probab=86.79  E-value=3  Score=34.49  Aligned_cols=72  Identities=21%  Similarity=0.572  Sum_probs=57.3

Q ss_pred             hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278          18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQ   96 (98)
Q Consensus        18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~   96 (98)
                      ...+|-+..+-|= .+-.+..+   .+|-|.++|.+--  +|+-+..+. +|..-=|..|..-   .|+||||+=|--.+
T Consensus       144 ~~~~~e~ne~~w~-~~nd~Ffl---t~GlG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~---GryfA~GsADAlvS  214 (313)
T KOG1407|consen  144 EQFKFEVNEISWN-NSNDLFFL---TNGLGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPD---GRYFATGSADALVS  214 (313)
T ss_pred             hcccceeeeeeec-CCCCEEEE---ecCCceEEEEecc--ccccccccccCCcceEEEEECCC---CceEeeccccceee
Confidence            3456777778887 66665554   3689999997765  899999887 7777789999766   59999999999999


Q ss_pred             eC
Q psy9278          97 IW   98 (98)
Q Consensus        97 iw   98 (98)
                      +|
T Consensus       215 LW  216 (313)
T KOG1407|consen  215 LW  216 (313)
T ss_pred             cc
Confidence            98

>KOG0271|consensus

Probab=85.59  E-value=2.5  Score=36.59  Aligned_cols=60  Identities=12%  Similarity=0.354  Sum_probs=46.4

Q ss_pred             ecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          30 MPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        30 IP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      +|.+.|++.-+    +.|.+.||+++.+.....- .-+..++-|.-.|..    -.|++|+.|+.+.+|
T Consensus       214 ~p~~r~las~s----kDg~vrIWd~~~~~~~~~l-sgHT~~VTCvrwGG~----gliySgS~DrtIkvw  273 (480)
T KOG0271|consen  214 VPPCRRLASSS----KDGSVRIWDTKLGTCVRTL-SGHTASVTCVRWGGE----GLIYSGSQDRTIKVW  273 (480)
T ss_pred             CCCccceeccc----CCCCEEEEEccCceEEEEe-ccCccceEEEEEcCC----ceEEecCCCceEEEE
Confidence            35666776444    7999999999887644332 348899999988864    479999999999998

>smart00461 WH1 WASP homology region 1

Probab=85.42  E-value=2.2  Score=29.09  Aligned_cols=50  Identities=20%  Similarity=0.266  Sum_probs=36.5

Q ss_pred             cceeeeeeecCCcc-EEEEcc-ccCCcccEEEEEecCCceeEEEEecccCcee
Q psy9278          22 YQLFDCKWMPCSAK-FIVLGM-KPKGTGSIQMYEINDGQPELVKTVEKPNAFK   72 (98)
Q Consensus        22 yT~fD~kWIP~SAr-fV~lG~-~prgtG~iqIyeL~~~~l~~~~e~e~~~~~K   72 (98)
                      |....-+|+|...- .+++.. ++..+..++|+.+..+. +++=|.|-..+|+
T Consensus        16 y~~~~~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~-~vv~e~ely~~~~   67 (106)
T smart00461       16 YDADTKKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQD-KVIWNQELYKNFK   67 (106)
T ss_pred             EeCCCCCeEECCCCCEEEEEEEecCCeEEEEEEEecCCC-eEEEEEeccCCCE
Confidence            44444479997777 777766 57889999999999885 6666666555554

Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.

>KOG0280|consensus

Probab=84.82  E-value=1.6  Score=36.43  Aligned_cols=20  Identities=30%  Similarity=0.674  Sum_probs=16.4

Q ss_pred             CCCCCceEEEeecCceEEeC
Q psy9278          79 SPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        79 Ssl~~r~lAtGdf~G~L~iw   98 (98)
                      |......+|||++|-.|++|
T Consensus       219 s~~~~~~I~TGsYDe~i~~~  238 (339)
T KOG0280|consen  219 SPPKPTYIATGSYDECIRVL  238 (339)
T ss_pred             CCCCCceEEEeccccceeee
Confidence            44456799999999999987

>KOG2445|consensus

Probab=84.70  E-value=2.3  Score=35.78  Aligned_cols=66  Identities=26%  Similarity=0.411  Sum_probs=51.6

Q ss_pred             ceeeeeeecC--CccEEEEccccCCcccEEEEEecCC----ceeEEEEec--------ccCceeeeecCCCCCCCceEEE
Q psy9278          23 QLFDCKWMPC--SAKFIVLGMKPKGTGSIQMYEINDG----QPELVKTVE--------KPNAFKCGTFNASPLSERYLAT   88 (98)
Q Consensus        23 T~fD~kWIP~--SArfV~lG~~prgtG~iqIyeL~~~----~l~~~~e~e--------~~~~~KC~TFgaSsl~~r~lAt   88 (98)
                      .|+|++.-|.  +-++++++    ..|+|+|||.-+-    .-+|+.|+.        ...+--|.+.-.|...+..||.
T Consensus       114 sV~DV~FaP~hlGLklA~~~----aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAv  189 (361)
T KOG2445|consen  114 SVTDVKFAPKHLGLKLAAAS----ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAV  189 (361)
T ss_pred             ceeEEEecchhcceEEEEec----cCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEE
Confidence            5788888885  45666666    8999999997443    456777877        5666779999988888999999


Q ss_pred             eecC
Q psy9278          89 GDFE   92 (98)
Q Consensus        89 Gdf~   92 (98)
                      |.-+
T Consensus       190 gs~e  193 (361)
T KOG2445|consen  190 GSDE  193 (361)
T ss_pred             Eccc
Confidence            9876

>KOG2048|consensus

Probab=84.56  E-value=2.3  Score=38.44  Aligned_cols=66  Identities=20%  Similarity=0.507  Sum_probs=42.5

Q ss_pred             CccEEEEccccCC--------cccEEEEEecCCc-eeEEE-EecccC-ceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          33 SAKFIVLGMKPKG--------TGSIQMYEINDGQ-PELVK-TVEKPN-AFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        33 SArfV~lG~~prg--------tG~iqIyeL~~~~-l~~~~-e~e~~~-~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+|.+.|--.|.|        .|+|+||+...+. +.++. .+.+-+ +=+|+-.+--.|+.-.||+||=.|.++.|
T Consensus       154 ~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FW  230 (691)
T KOG2048|consen  154 KSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFW  230 (691)
T ss_pred             cceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEE
Confidence            4444444444444        4899999997774 44221 222211 13466666666777899999999999998

>KOG0281|consensus

Probab=84.17  E-value=0.59  Score=40.15  Aligned_cols=55  Identities=22%  Similarity=0.705  Sum_probs=40.8

Q ss_pred             ccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          34 AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        34 ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      -||||-|+.   ...|++|+++-|.+  +.-.| +..-++|.-|-     +..+..|.+||++.||
T Consensus       370 ~rlvVSGSS---DntIRlwdi~~G~c--LRvLeGHEeLvRciRFd-----~krIVSGaYDGkikvW  425 (499)
T KOG0281|consen  370 DRLVVSGSS---DNTIRLWDIECGAC--LRVLEGHEELVRCIRFD-----NKRIVSGAYDGKIKVW  425 (499)
T ss_pred             CeEEEecCC---CceEEEEeccccHH--HHHHhchHHhhhheeec-----CceeeeccccceEEEE
Confidence            478888854   55799999988863  22233 45567888884     4579999999999999

>KOG0289|consensus

Probab=83.95  E-value=2.4  Score=36.94  Aligned_cols=48  Identities=19%  Similarity=0.475  Sum_probs=40.6

Q ss_pred             cccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          46 TGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        46 tG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .|.++||+|..+.  -+..+. +..++|-..|+-+-   +.|||+.=||.+.+|
T Consensus       368 d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENG---Y~Lat~add~~V~lw  416 (506)
T KOG0289|consen  368 DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENG---YWLATAADDGSVKLW  416 (506)
T ss_pred             CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCc---eEEEEEecCCeEEEE
Confidence            7899999998887  344444 88899999998874   899999999999988

>KOG0274|consensus

Probab=83.70  E-value=3.2  Score=35.82  Aligned_cols=56  Identities=13%  Similarity=0.396  Sum_probs=45.4

Q ss_pred             ccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          34 AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        34 ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      -.++|.|+.   .|.|.||...  ..++++.++ +...++|-.|+..    -++..|..|+.+++|
T Consensus       341 ~~~lvsgs~---d~~v~VW~~~--~~~cl~sl~gH~~~V~sl~~~~~----~~~~Sgs~D~~IkvW  397 (537)
T KOG0274|consen  341 EPLLVSGSY---DGTVKVWDPR--TGKCLKSLSGHTGRVYSLIVDSE----NRLLSGSLDTTIKVW  397 (537)
T ss_pred             CCEEEEEec---CceEEEEEhh--hceeeeeecCCcceEEEEEecCc----ceEEeeeeccceEee
Confidence            445556643   4599999999  777788777 8889999999885    379999999999998

>KOG0263|consensus

Probab=83.66  E-value=1.7  Score=39.34  Aligned_cols=73  Identities=18%  Similarity=0.423  Sum_probs=58.5

Q ss_pred             hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      +..+|-+.|++--|..-.|+..|    +.++-++|.-+...- +--..-+-.-+.|..|+.++   .++|||+-|-.+++
T Consensus       490 ~GH~~PVwdV~F~P~GyYFatas----~D~tArLWs~d~~~P-lRifaghlsDV~cv~FHPNs---~Y~aTGSsD~tVRl  561 (707)
T KOG0263|consen  490 KGHLAPVWDVQFAPRGYYFATAS----HDQTARLWSTDHNKP-LRIFAGHLSDVDCVSFHPNS---NYVATGSSDRTVRL  561 (707)
T ss_pred             cCCCcceeeEEecCCceEEEecC----CCceeeeeecccCCc-hhhhcccccccceEEECCcc---cccccCCCCceEEE
Confidence            46678899999999999999886    788889999876421 11123355678999999996   79999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       562 W  562 (707)
T KOG0263|consen  562 W  562 (707)
T ss_pred             E
Confidence            8

>KOG0973|consensus

Probab=83.60  E-value=3  Score=38.95  Aligned_cols=70  Identities=19%  Similarity=0.428  Sum_probs=59.0

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+-++-|+.|=|.++=+|.+|    -.+.+-||+...-  ++++-++ +...+|=.||=..   -++||+=..|..|.||
T Consensus       128 H~~DV~Dv~Wsp~~~~lvS~s----~DnsViiwn~~tF--~~~~vl~~H~s~VKGvs~DP~---Gky~ASqsdDrtikvw  198 (942)
T KOG0973|consen  128 HDSDVLDVNWSPDDSLLVSVS----LDNSVIIWNAKTF--ELLKVLRGHQSLVKGVSWDPI---GKYFASQSDDRTLKVW  198 (942)
T ss_pred             CCCccceeccCCCccEEEEec----ccceEEEEccccc--eeeeeeecccccccceEECCc---cCeeeeecCCceEEEE
Confidence            456788999999998888888    7889999987666  7777777 7778899999665   4899999999999998

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=83.41  E-value=2.8  Score=36.95  Aligned_cols=64  Identities=17%  Similarity=0.226  Sum_probs=50.1

Q ss_pred             CCccEEEEccccCCcccE----EEEEecCCceeEEEEe--cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          32 CSAKFIVLGMKPKGTGSI----QMYEINDGQPELVKTV--EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        32 ~SArfV~lG~~prgtG~i----qIyeL~~~~l~~~~e~--e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      +..-+-+|.++...+|..    -|||+.+++++.++..  .-+..+.|+.+..+   +..|+.|--||.|.+|
T Consensus       217 ~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~---E~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  217 QPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPS---EDKLVLGCEDGSIILY  286 (545)
T ss_pred             CCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcc---cceEEEEecCCeEEEE
Confidence            344456777777666654    5899999999988754  47778999988665   6799999999999886

>KOG0772|consensus

Probab=82.64  E-value=1.6  Score=38.91  Aligned_cols=69  Identities=22%  Similarity=0.426  Sum_probs=48.4

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec--c--cCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE--K--PNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e--~--~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      -|=.|.|=|.--.|. -|   =..|.||||++-.-.+...--+.  +  -..|-|.+|-.-   -+.|++=.||+.|.+|
T Consensus       319 ~~tsC~~nrdg~~iA-ag---c~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d---g~~LlSRg~D~tLKvW  391 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIA-AG---CLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD---GNYLLSRGFDDTLKVW  391 (641)
T ss_pred             CceeeecCCCcchhh-hc---ccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc---cchhhhccCCCceeee
Confidence            345678888776643 23   36899999998444444443333  2  248999999443   3689999999999999

>KOG1408|consensus

Probab=82.57  E-value=1.9  Score=40.05  Aligned_cols=28  Identities=25%  Similarity=0.409  Sum_probs=20.4

Q ss_pred             cCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          68 PNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        68 ~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..+|+|.-   -|..-.|||.||--|+|+||
T Consensus       459 r~G~R~~~---vSp~gqhLAsGDr~GnlrVy  486 (1080)
T KOG1408|consen  459 RFGFRALA---VSPDGQHLASGDRGGNLRVY  486 (1080)
T ss_pred             ccceEEEE---ECCCcceecccCccCceEEE
Confidence            35566652   23445699999999999986

>KOG0316|consensus

Probab=82.48  E-value=2.9  Score=34.35  Aligned_cols=76  Identities=18%  Similarity=0.412  Sum_probs=55.4

Q ss_pred             hhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecC
Q psy9278          14 CLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFE   92 (98)
Q Consensus        14 ehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~   92 (98)
                      -|-.++.-+-+-|..=.-.+++|...|    |.-++++|+.+.|++  ++... +...+--.-|--++   .-+|.|+||
T Consensus        52 iktYsghG~EVlD~~~s~Dnskf~s~G----gDk~v~vwDV~TGkv--~Rr~rgH~aqVNtV~fNees---SVv~SgsfD  122 (307)
T KOG0316|consen   52 IKTYSGHGHEVLDAALSSDNSKFASCG----GDKAVQVWDVNTGKV--DRRFRGHLAQVNTVRFNEES---SVVASGSFD  122 (307)
T ss_pred             eeeecCCCceeeeccccccccccccCC----CCceEEEEEcccCee--eeecccccceeeEEEecCcc---eEEEecccc
Confidence            344456667788888888999999999    889999999998853  23333 33333444454443   479999999


Q ss_pred             ceEEeC
Q psy9278          93 GKLQIW   98 (98)
Q Consensus        93 G~L~iw   98 (98)
                      -+|++|
T Consensus       123 ~s~r~w  128 (307)
T KOG0316|consen  123 SSVRLW  128 (307)
T ss_pred             ceeEEE
Confidence            999998

>KOG0275|consensus

Probab=82.33  E-value=0.49  Score=40.43  Aligned_cols=71  Identities=24%  Similarity=0.380  Sum_probs=50.4

Q ss_pred             eeeeeecCCccEEEEcccc---CCcccEEEEEecCCceeEEEEec-------ccCceeeeecCCCCCCCceEEEeecCce
Q psy9278          25 FDCKWMPCSAKFIVLGMKP---KGTGSIQMYEINDGQPELVKTVE-------KPNAFKCGTFNASPLSERYLATGDFEGK   94 (98)
Q Consensus        25 fD~kWIP~SArfV~lG~~p---rgtG~iqIyeL~~~~l~~~~e~e-------~~~~~KC~TFgaSsl~~r~lAtGdf~G~   94 (98)
                      |..|=-|.+|||--=|++.   .-.|-|+||+...|+|++--...       .+.++.|..|---+   .-||+|+-||+
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs---EMlAsGsqDGk  286 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS---EMLASGSQDGK  286 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH---HHhhccCcCCc
Confidence            5556667777764333322   23799999999999776432211       57789999995443   57999999999


Q ss_pred             EEeC
Q psy9278          95 LQIW   98 (98)
Q Consensus        95 L~iw   98 (98)
                      +.||
T Consensus       287 IKvW  290 (508)
T KOG0275|consen  287 IKVW  290 (508)
T ss_pred             EEEE
Confidence            9999

>KOG0273|consensus

Probab=81.95  E-value=7  Score=34.39  Aligned_cols=70  Identities=19%  Similarity=0.386  Sum_probs=53.2

Q ss_pred             CCcce-eeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQL-FDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~-fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      +.-++ -|+-|+-.. .||+.+    -.|+|.||.+....-.....= +.+.+-|.-|-..   .--||+.+-||.|.||
T Consensus       316 ~~s~~~lDVdW~~~~-~F~ts~----td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~t---g~LLaS~SdD~TlkiW  386 (524)
T KOG0273|consen  316 FHSAPALDVDWQSND-EFATSS----TDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPT---GSLLASCSDDGTLKIW  386 (524)
T ss_pred             eccCCccceEEecCc-eEeecC----CCceEEEEEecCCCcceeeec-ccCceEEEEECCC---CceEEEecCCCeeEee
Confidence            33455 789999775 588655    789999999988765444333 8888888877433   3579999999999999

>KOG0299|consensus

Probab=81.92  E-value=3.9  Score=35.57  Aligned_cols=56  Identities=14%  Similarity=0.469  Sum_probs=42.4

Q ss_pred             ccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          34 AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        34 ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      -|.|++|..   ...+++|.+ -.+-+++..- ...+|-|+.|=.+    -||++|+=+|++-+|
T Consensus       298 eR~vtVGgr---DrT~rlwKi-~eesqlifrg-~~~sidcv~~In~----~HfvsGSdnG~IaLW  353 (479)
T KOG0299|consen  298 ERCVTVGGR---DRTVRLWKI-PEESQLIFRG-GEGSIDCVAFIND----EHFVSGSDNGSIALW  353 (479)
T ss_pred             cceEEeccc---cceeEEEec-cccceeeeeC-CCCCeeeEEEecc----cceeeccCCceEEEe
Confidence            378888855   457899998 4455665543 3557899988544    599999999999998

>PRK01742 tolB translocation protein TolB; Provisional

Probab=81.61  E-value=6.4  Score=31.79  Aligned_cols=70  Identities=19%  Similarity=0.331  Sum_probs=47.4

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEe-ecCceEEeC
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATG-DFEGKLQIW   98 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtG-df~G~L~iw   98 (98)
                      -+.+.+|-|...+++.+. .-++...|.+|++..++.+.+...+...  -...|-   ...+.||.+ +-+|+..||
T Consensus       205 ~v~~p~wSPDG~~la~~s-~~~~~~~i~i~dl~tg~~~~l~~~~g~~--~~~~wS---PDG~~La~~~~~~g~~~Iy  275 (429)
T PRK01742        205 PLMSPAWSPDGSKLAYVS-FENKKSQLVVHDLRSGARKVVASFRGHN--GAPAFS---PDGSRLAFASSKDGVLNIY  275 (429)
T ss_pred             ccccceEcCCCCEEEEEE-ecCCCcEEEEEeCCCCceEEEecCCCcc--CceeEC---CCCCEEEEEEecCCcEEEE
Confidence            467899999998887765 3345567999999998877776554222  123342   234567764 688888776

>PRK02889 tolB translocation protein TolB; Provisional

Probab=81.58  E-value=6.8  Score=31.69  Aligned_cols=70  Identities=16%  Similarity=0.274  Sum_probs=45.9

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEE-EeecCceEEeC
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLA-TGDFEGKLQIW   98 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lA-tGdf~G~L~iw   98 (98)
                      .+...+|-|...+++.+. .-++...|-+|+++.|+.+.+...+.  ..-+..|-   ...+.|| +.+-+|+..||
T Consensus       197 ~v~~p~wSPDG~~la~~s-~~~~~~~I~~~dl~~g~~~~l~~~~g--~~~~~~~S---PDG~~la~~~~~~g~~~Iy  267 (427)
T PRK02889        197 PIISPAWSPDGTKLAYVS-FESKKPVVYVHDLATGRRRVVANFKG--SNSAPAWS---PDGRTLAVALSRDGNSQIY  267 (427)
T ss_pred             CcccceEcCCCCEEEEEE-ccCCCcEEEEEECCCCCEEEeecCCC--CccceEEC---CCCCEEEEEEccCCCceEE
Confidence            355779999997766654 44566779999999998877665432  22233342   2234666 56788887775

>KOG0290|consensus

Probab=81.42  E-value=2.8  Score=35.22  Aligned_cols=50  Identities=20%  Similarity=0.436  Sum_probs=38.7

Q ss_pred             ccceehhhhhcCCcceeeeeeecCCcc-EEEEccccCCcccEEEEEecCCc-eeEEEEecc
Q psy9278           9 KPQIICLVEKSLDYQLFDCKWMPCSAK-FIVLGMKPKGTGSIQMYEINDGQ-PELVKTVEK   67 (98)
Q Consensus         9 kPQIIehi~ksl~yT~fD~kWIP~SAr-fV~lG~~prgtG~iqIyeL~~~~-l~~~~e~e~   67 (98)
                      |-|+|.|=     =-|||+.|--.|+. |+.||    +.|.+++|.|..-+ =+.+.|-..
T Consensus       189 kTQLIAHD-----KEV~DIaf~~~s~~~FASvg----aDGSvRmFDLR~leHSTIIYE~p~  240 (364)
T KOG0290|consen  189 KTQLIAHD-----KEVYDIAFLKGSRDVFASVG----ADGSVRMFDLRSLEHSTIIYEDPS  240 (364)
T ss_pred             eeEEEecC-----cceeEEEeccCccceEEEec----CCCcEEEEEecccccceEEecCCC
Confidence            77999985     45999999988876 78899    89999999996654 344455433

>KOG0646|consensus

Probab=81.39  E-value=5.8  Score=34.55  Aligned_cols=69  Identities=20%  Similarity=0.270  Sum_probs=53.1

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      |.-|=+-+--=|+.||+.+.+    -.-++++|+|+.|  +|+..+-.|.+++|++-   +..+|++-+|.=+|++.+
T Consensus       175 lsITDl~ig~Gg~~~rl~TaS----~D~t~k~wdlS~g--~LLlti~fp~si~av~l---Dpae~~~yiGt~~G~I~~  243 (476)
T KOG0646|consen  175 LSITDLQIGSGGTNARLYTAS----EDRTIKLWDLSLG--VLLLTITFPSSIKAVAL---DPAERVVYIGTEEGKIFQ  243 (476)
T ss_pred             ceeEEEEecCCCccceEEEec----CCceEEEEEeccc--eeeEEEecCCcceeEEE---cccccEEEecCCcceEEe
Confidence            333334444445788888777    5678999999999  56777889999999976   555899999999998765

>KOG0264|consensus

Probab=80.02  E-value=8.7  Score=33.02  Aligned_cols=84  Identities=12%  Similarity=0.216  Sum_probs=65.6

Q ss_pred             CCccceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceE
Q psy9278           7 LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYL   86 (98)
Q Consensus         7 ~~kPQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~l   86 (98)
                      .++||..+..   ..--++.+.|=|-+.-+++.|+   ..|.+.+|.|.+=...+..--.+...+=|.+|-...  +.-|
T Consensus       261 ~~~~~~~~~a---h~~~vn~~~fnp~~~~ilAT~S---~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~--etvL  332 (422)
T KOG0264|consen  261 TSKPSHSVKA---HSAEVNCVAFNPFNEFILATGS---ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN--ETVL  332 (422)
T ss_pred             CCCCcccccc---cCCceeEEEeCCCCCceEEecc---CCCcEEEeechhcccCceeccCCCcceEEEEeCCCC--Ccee
Confidence            4555544444   3445677788888888888874   478999999988888777766688899999995554  7789


Q ss_pred             EEeecCceEEeC
Q psy9278          87 ATGDFEGKLQIW   98 (98)
Q Consensus        87 AtGdf~G~L~iw   98 (98)
                      |+..+||.|+||
T Consensus       333 ASSg~D~rl~vW  344 (422)
T KOG0264|consen  333 ASSGTDRRLNVW  344 (422)
T ss_pred             EecccCCcEEEE
Confidence            999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
3i2n_A	357	Crystal Structure Of Wd40 Repeats Protein Wdr92 Len		1e-27

>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92 Length = 357

Iteration: 1
 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 66/92 (71%)
Query: 7  LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE 66
           +KPQII  ++K  +Y +FDCKW+PCSAKF+ +G   +GTG IQ+YEI  G  +L++ +E
Sbjct: 4  FEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIE 63
Query: 67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          K    KCGTF A+ L +RYLATGDF G L IW
Sbjct: 64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIW 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	1e-26

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 99.4 bits (248), Expect = 1e-26
 Identities = 50/93 (53%), Positives = 66/93 (70%)

Query: 6  KLDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV 65
            +KPQII  ++K  +Y +FDCKW+PCSAKF+ +G   +GTG IQ+YEI  G  +L++ +
Sbjct: 3  AFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI 62

Query: 66 EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
          EK    KCGTF A+ L +RYLATGDF G L IW
Sbjct: 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIW 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.52
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.14
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.12
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.1
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.09
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.05
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.01
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.01
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	98.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.99
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.98
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.96
2pm7_B	297	Protein transport protein SEC13, protein transport	97.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.93
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.9
2pm7_B	297	Protein transport protein SEC13, protein transport	97.9
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.9
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.87
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.86
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.84
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.84
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.83
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.81
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.8
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.8
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.8
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.78
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.77
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.76
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.76
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.76
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.74
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.73
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.73
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.72
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.72
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.71
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.71
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.71
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.7
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.69
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	97.69
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.66
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.66
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.66
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.66
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.66
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.65
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.64
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.63
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	97.6
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.6
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.6
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.59
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.59
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.58
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.58
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.56
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.56
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.52
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.52
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	97.51
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.47
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.47
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.47
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.44
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	97.44
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.43
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.43
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.42
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.42
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.41
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.41
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.4
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.4
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.39
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.35
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.35
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.33
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.33
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.32
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.31
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.31
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.28
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.28
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.27
3jro_A	753	Fusion protein of protein transport protein SEC13	97.26
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.26
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.24
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.23
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.23
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.22
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.21
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.19
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.19
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.18
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.18
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	97.16
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.14
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.13
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.13
3jro_A	753	Fusion protein of protein transport protein SEC13	97.12
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.11
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.07
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.06
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	97.04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.99
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	96.95
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.86
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.81
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.74
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.68
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.62
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.62
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	96.59
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.39
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	96.28
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	96.11
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.09
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	96.02
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	95.92
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	95.89
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	95.78
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	95.68
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	95.64
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.32
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	95.23
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	95.21
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	95.2
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	95.19
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.18
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	95.1
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	95.02
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	94.06
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	94.05
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	93.96
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	93.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	93.62
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	93.43
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	93.25
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	92.98
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	92.03
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	91.84
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	91.83
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	91.69
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	91.57
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	90.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	90.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	90.55
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	90.47
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	89.81
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	89.73
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	89.61
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	89.58
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	89.17
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	88.39
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	86.55
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	85.79
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	84.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	83.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	82.95
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	82.38
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	82.29
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	81.21

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.52  E-value=6.4e-14  Score=98.70  Aligned_cols=93  Identities=54%  Similarity=1.116  Sum_probs=84.4

Q ss_pred             CCCccceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCce
Q psy9278           6 KLDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERY   85 (98)
Q Consensus         6 ~~~kPQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~   85 (98)
                      .+++||+++|+.+..+..+++++|-|...++++.|+..++.|.|+||+++.+++..+...++..++.|..|-..+...+.
T Consensus         3 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   82 (357)
T 3i2n_A            3 AFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRY   82 (357)
T ss_dssp             --CCCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCC
T ss_pred             ccChhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCce
Confidence            47899999999999999999999999999999999999999999999999999998988899999999999887666789


Q ss_pred             EEEeecCceEEeC
Q psy9278          86 LATGDFEGKLQIW   98 (98)
Q Consensus        86 lAtGdf~G~L~iw   98 (98)
                      ||+|+.||.+.||
T Consensus        83 l~~~~~dg~i~iw   95 (357)
T 3i2n_A           83 LATGDFGGNLHIW   95 (357)
T ss_dssp             EEEEETTSCEEEE
T ss_pred             EEEecCCCeEEEE
Confidence            9999999999998

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.14  E-value=1.7e-05  Score=54.24  Aligned_cols=80  Identities=10%  Similarity=0.228  Sum_probs=60.5

Q ss_pred             hhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc--eeEEEEec-ccCceeeeecCCCCCCCceEEEee
Q psy9278          14 CLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ--PELVKTVE-KPNAFKCGTFNASPLSERYLATGD   90 (98)
Q Consensus        14 ehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~--l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGd   90 (98)
                      +++-+...-.+.++.|-|....+++.+    ..|.|+||+++.++  .+++..++ +..++.|..|-.+. ..+.||+|+
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-d~~~l~s~~   78 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCS----SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE-YGRIIASAS   78 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEE----TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG-GCSEEEEEE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEee----CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC-CCCEEEEEc
Confidence            334445567899999999877666554    57999999998653  35666655 78899999995431 146899999


Q ss_pred             cCceEEeC
Q psy9278          91 FEGKLQIW   98 (98)
Q Consensus        91 f~G~L~iw   98 (98)
                      .||.+.||
T Consensus        79 ~dg~v~vw   86 (351)
T 3f3f_A           79 YDKTVKLW   86 (351)
T ss_dssp             TTSCEEEE
T ss_pred             CCCeEEEE
Confidence            99999998

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.12  E-value=2e-05  Score=55.67  Aligned_cols=71  Identities=8%  Similarity=0.155  Sum_probs=58.6

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-.++.+.|-|....+++.+    ..|.|+||+++.++++.+..+. +..++.|..|-..   .+.||+|+.||.+.||
T Consensus         8 ~~~i~~~~~s~~~~~l~~~~----~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            8 VEPISCHAWNKDRTQIAICP----NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD---SNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             SSCCCEEEECTTSSEEEEEC----SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT---TTEEEEEETTSCEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEe----CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC---CCEEEEEcCCCeEEEE
Confidence            34578999999876555544    3789999999999887888775 7889999999653   5789999999999998

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.10  E-value=4.8e-06  Score=59.74  Aligned_cols=81  Identities=11%  Similarity=0.272  Sum_probs=62.6

Q ss_pred             CCccceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCce
Q psy9278           7 LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERY   85 (98)
Q Consensus         7 ~~kPQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~   85 (98)
                      |..|++..+.+    -.+.++.|-|....+ +.|+   ..|.|+||+++.++.+++..++ +..++.|..|-..   .+.
T Consensus         1 m~~~~~~~~~~----~~v~~~~~s~~g~~l-~~~~---~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~   69 (377)
T 3dwl_C            1 MATSQVLHILP----KPSYEHAFNSQRTEF-VTTT---ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK---SNR   69 (377)
T ss_dssp             -CCEEEEEECS----SCCSCCEECSSSSEE-ECCC---SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT---TCC
T ss_pred             CCcceeEecCC----CcEEEEEECCCCCEE-EEec---CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC---CCE
Confidence            45677665433    367899999976554 4553   4799999999998777777776 7889999999654   468


Q ss_pred             EEEeecCceEEeC
Q psy9278          86 LATGDFEGKLQIW   98 (98)
Q Consensus        86 lAtGdf~G~L~iw   98 (98)
                      ||+|+.||.+.||
T Consensus        70 l~s~s~d~~v~vw   82 (377)
T 3dwl_C           70 IVTCSQDRNAYVY   82 (377)
T ss_dssp             EEEEETTSSEEEC
T ss_pred             EEEEeCCCeEEEE
Confidence            9999999999998

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.09  E-value=1.8e-05  Score=59.09  Aligned_cols=70  Identities=13%  Similarity=0.361  Sum_probs=54.8

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE---ecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT---VEKPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e---~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      ...++++.|.|.. +++ .|+   ..|.|+||+++.++...+.+   .++...+.|..|-..   .+.||+|+.||.+.|
T Consensus        82 ~~~v~~~~~s~d~-~l~-~~s---~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd---g~~l~sgs~d~~i~i  153 (344)
T 4gqb_B           82 EAGVADLTWVGER-GIL-VAS---DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS---GTQAVSGSKDICIKV  153 (344)
T ss_dssp             SSCEEEEEEETTT-EEE-EEE---TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT---SSEEEEEETTSCEEE
T ss_pred             CCCEEEEEEeCCC-eEE-EEE---CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC---CCEEEEEeCCCeEEE
Confidence            3468999999984 555 443   57899999999887554433   357889999999543   478999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       154 w  154 (344)
T 4gqb_B          154 W  154 (344)
T ss_dssp             E
T ss_pred             E
Confidence            8

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.05  E-value=1.8e-05  Score=58.55  Aligned_cols=72  Identities=7%  Similarity=0.081  Sum_probs=59.1

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ....+..+.|-|...++++.|+   ..|.|+||+++.+++  +....+...+.|..|-.  ...+.||+|+.||.+.||
T Consensus       268 ~~~~v~~l~~sp~~~~~lasgs---~D~~i~iwd~~~~~~--~~~~~H~~~V~~vafsP--~d~~~l~s~s~Dg~v~iW  339 (357)
T 4g56_B          268 HSQNITGLAYSYHSSPFLASIS---EDCTVAVLDADFSEV--FRDLSHRDFVTGVAWSP--LDHSKFTTVGWDHKVLHH  339 (357)
T ss_dssp             CSSCEEEEEECSSSSCCEEEEE---TTSCEEEECTTSCEE--EEECCCSSCEEEEEECS--SSTTEEEEEETTSCEEEE
T ss_pred             cceeEEEEEEcCCCCCEEEEEe---CCCEEEEEECCCCcE--eEECCCCCCEEEEEEeC--CCCCEEEEEcCCCeEEEE
Confidence            3456789999999999888775   368999999988864  55667889999999932  346789999999999998

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.01  E-value=4.5e-05  Score=55.69  Aligned_cols=73  Identities=21%  Similarity=0.333  Sum_probs=60.6

Q ss_pred             cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      ...-.+..+.|-|+...+++-+    ..|.+.||+++.++.+++..++ +..++.|..|-..   .+.||+|+.||.+.|
T Consensus        59 ~h~~~v~~~~~sp~g~~l~s~s----~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~---~~~l~s~s~D~~v~i  131 (345)
T 3fm0_A           59 GHQRTVRKVAWSPCGNYLASAS----FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS---GNLLATCSRDKSVWV  131 (345)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEE----TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT---SSEEEEEETTSCEEE
T ss_pred             ccCCcEEEEEECCCCCEEEEEE----CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC---CCEEEEEECCCeEEE
Confidence            4456789999999887666555    5789999999999988888877 7789999999654   478999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       132 w  132 (345)
T 3fm0_A          132 W  132 (345)
T ss_dssp             E
T ss_pred             E
Confidence            8

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.01  E-value=3.8e-05  Score=54.02  Aligned_cols=75  Identities=15%  Similarity=0.284  Sum_probs=60.6

Q ss_pred             cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      ..+-.+.++.|-|....+++.+    ..|.|.||+++.++.+++..++ +..++.|..|-... ..+.||+|+.||.+.|
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            9 AHNELIHDAVLDYYGKRLATCS----SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVLI   83 (379)
T ss_dssp             ECCCCEEEEEECSSSSEEEEEE----TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSCEEE
T ss_pred             CCcccEEEEEEcCCCCEEEEEE----CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-CCCEEEEeccCCEEEE
Confidence            3456789999999877666554    4799999999988888888776 78899999995331 1468999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus        84 w   84 (379)
T 3jrp_A           84 W   84 (379)
T ss_dssp             E
T ss_pred             E
Confidence            8

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=98.00  E-value=3e-05  Score=55.97  Aligned_cols=81  Identities=15%  Similarity=0.289  Sum_probs=57.9

Q ss_pred             ehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeec
Q psy9278          13 ICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDF   91 (98)
Q Consensus        13 Iehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf   91 (98)
                      |..+.+...-.+.+++|-|...++++-+    ..|.|+||+++.++..++..++ +..++.|..|-... ..+.||+|+.
T Consensus         5 ~~~~~~~H~~~V~~v~~s~~g~~lasgs----~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~-~~~~l~s~s~   79 (316)
T 3bg1_A            5 INTVDTSHEDMIHDAQMDYYGTRLATCS----SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM-YGNILASCSY   79 (316)
T ss_dssp             ---------CCEEEEEECGGGCEEEEEE----TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG-GSSCEEEEET
T ss_pred             eeeecccccCeEEEeeEcCCCCEEEEEe----CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC-CCCEEEEEEC
Confidence            3334444556789999999877666554    6799999999988776666665 78899999995321 1358999999


Q ss_pred             CceEEeC
Q psy9278          92 EGKLQIW   98 (98)
Q Consensus        92 ~G~L~iw   98 (98)
                      ||.+.||
T Consensus        80 D~~v~iW   86 (316)
T 3bg1_A           80 DRKVIIW   86 (316)
T ss_dssp             TSCEEEE
T ss_pred             CCEEEEE
Confidence            9999998

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.99  E-value=3.1e-05  Score=53.49  Aligned_cols=69  Identities=17%  Similarity=0.388  Sum_probs=53.3

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      +|-..-+-|=|.  .++++|.    .+.|.||+++.|++..+-+. ++...+.|..|-..   .+.||+|+.||.+.||
T Consensus        25 d~y~~~l~WS~~--~~lAvg~----D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~---~~~l~sgs~Dg~v~iw   94 (318)
T 4ggc_A           25 DYYLNLVDWSSG--NVLAVAL----DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE---GNYLAVGTSSAEVQLW   94 (318)
T ss_dssp             CTTCBCEEECTT--SEEEEEE----TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT---SSEEEEEETTSEEEEE
T ss_pred             cccceEEEECCC--CEEEEEe----CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC---CCEEEEEECCCcEEEe
Confidence            344455778654  5888884    57899999999886655554 46678999999654   4799999999999998

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.98  E-value=9.4e-06  Score=58.41  Aligned_cols=73  Identities=11%  Similarity=0.266  Sum_probs=60.2

Q ss_pred             ceeeeeeecCCccEEEEcccc-------CCcccEEEEEecCCce-eEEEEecccCceeeeecCCCCCCCceEEEeecCce
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKP-------KGTGSIQMYEINDGQP-ELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGK   94 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~p-------rgtG~iqIyeL~~~~l-~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~   94 (98)
                      .+..+.|-|...++++.|...       ...|.|+||+++.++. +.+...+++.++.|..|-.   ..+.||+|+.||.
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~   90 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH---NNKIIAGALDNGS   90 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECS---SSSCEEEEESSSC
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECC---CCCeEEEEccCCe
Confidence            577899999988899988554       3578999999988864 3666677889999999944   3578999999999


Q ss_pred             EEeC
Q psy9278          95 LQIW   98 (98)
Q Consensus        95 L~iw   98 (98)
                      +.||
T Consensus        91 v~vw   94 (416)
T 2pm9_A           91 LELY   94 (416)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9998

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.96  E-value=5.4e-05  Score=55.22  Aligned_cols=86  Identities=13%  Similarity=0.273  Sum_probs=64.3

Q ss_pred             CCccceehhhhhcCCcceeeeeeecCC---ccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCC
Q psy9278           7 LDKPQIICLVEKSLDYQLFDCKWMPCS---AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLS   82 (98)
Q Consensus         7 ~~kPQIIehi~ksl~yT~fD~kWIP~S---ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~   82 (98)
                      .+...++....+..+-.++.+.|-|..   .++++.|+   ..|.++||+++.+++.+....+ +..++.|..|...   
T Consensus        18 ~~~~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs---~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~---   91 (321)
T 3ow8_A           18 TNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGS---LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT---   91 (321)
T ss_dssp             ---CEEEEEETTSSSSCEEEEEEC-------CEEEEEE---TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS---
T ss_pred             hhhhhheeeecccCCCcEEEEEEecCCCCCCCEEEEEc---CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC---
Confidence            344455555556777899999999863   45666664   5789999999999888877766 8889999999654   


Q ss_pred             CceEEEeecCceEEeC
Q psy9278          83 ERYLATGDFEGKLQIW   98 (98)
Q Consensus        83 ~r~lAtGdf~G~L~iw   98 (98)
                      .+.||+|+.||.+.||
T Consensus        92 ~~~l~s~s~D~~i~lW  107 (321)
T 3ow8_A           92 LPIAASSSLDAHIRLW  107 (321)
T ss_dssp             SSEEEEEETTSEEEEE
T ss_pred             CCEEEEEeCCCcEEEE
Confidence            3689999999999998

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.96  E-value=5e-05  Score=53.17  Aligned_cols=73  Identities=15%  Similarity=0.317  Sum_probs=56.9

Q ss_pred             cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc--eeEEEEecccCceeeeecCCCCCCCc-eEEEeecCceE
Q psy9278          19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ--PELVKTVEKPNAFKCGTFNASPLSER-YLATGDFEGKL   95 (98)
Q Consensus        19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~--l~~~~e~e~~~~~KC~TFgaSsl~~r-~lAtGdf~G~L   95 (98)
                      ...-.++.+.|-|....+++.+    ..|.|+||+++.++  ..+.....+..++.|..|-..   .+ .||+|+.||.+
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~----~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i   81 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITS----WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN---TDLQIYVGTVQGEI   81 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEE----TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES---SSEEEEEEETTSCE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEc----CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC---CCcEEEEEcCCCeE
Confidence            3445789999999776665554    67999999999887  223334467889999999654   46 89999999999


Q ss_pred             EeC
Q psy9278          96 QIW   98 (98)
Q Consensus        96 ~iw   98 (98)
                      .+|
T Consensus        82 ~~w   84 (342)
T 1yfq_A           82 LKV   84 (342)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.96  E-value=7.5e-05  Score=53.28  Aligned_cols=76  Identities=17%  Similarity=0.327  Sum_probs=58.5

Q ss_pred             CCcceeeeeeecCC------------ccEEEEccccCCcccEEEEEecCCc--eeEEEEec-ccCceeeeecCCCCCCCc
Q psy9278          20 LDYQLFDCKWMPCS------------AKFIVLGMKPKGTGSIQMYEINDGQ--PELVKTVE-KPNAFKCGTFNASPLSER   84 (98)
Q Consensus        20 l~yT~fD~kWIP~S------------ArfV~lG~~prgtG~iqIyeL~~~~--l~~~~e~e-~~~~~KC~TFgaSsl~~r   84 (98)
                      ....+..+.|-|..            .++++.|+   ..|.|+||+++.++  ..++..++ +...+.|..|-......+
T Consensus       144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs---~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~  220 (297)
T 2pm7_B          144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS  220 (297)
T ss_dssp             CSSCEEEEEECCCC------------CCEEEEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred             ccCccceEeecCCcccccccCCCCCCcceEEEEc---CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCce
Confidence            34568889999974            35566653   47899999998776  44555665 778899999976654467


Q ss_pred             eEEEeecCceEEeC
Q psy9278          85 YLATGDFEGKLQIW   98 (98)
Q Consensus        85 ~lAtGdf~G~L~iw   98 (98)
                      .||+|+.||.+.||
T Consensus       221 ~las~s~D~~v~iW  234 (297)
T 2pm7_B          221 YMASVSQDRTCIIW  234 (297)
T ss_dssp             EEEEEETTSCEEEE
T ss_pred             EEEEEECCCcEEEE
Confidence            99999999999998

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.93  E-value=8.2e-05  Score=51.89  Aligned_cols=76  Identities=13%  Similarity=0.239  Sum_probs=58.9

Q ss_pred             hhcCCcceeeeeeecCC--ccEEEEccccCCcccEEEEEecCCceeEEEE-ecccCceeeeecCCCCCCCceEEEeecCc
Q psy9278          17 EKSLDYQLFDCKWMPCS--AKFIVLGMKPKGTGSIQMYEINDGQPELVKT-VEKPNAFKCGTFNASPLSERYLATGDFEG   93 (98)
Q Consensus        17 ~ksl~yT~fD~kWIP~S--ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e-~e~~~~~KC~TFgaSsl~~r~lAtGdf~G   93 (98)
                      .+..+-.+.++.|-|..  -++++.|.   ..|.|+||+++.+...+... ..+..++.|..|-.   ..+.||+|+.||
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~dg  108 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGS---WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD---DGSKVFTASCDK  108 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEE---TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT---TSSEEEEEETTS
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEEC---CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc---CCCEEEEEcCCC
Confidence            34556789999999997  56666664   46899999999844444333 34788999999965   357899999999


Q ss_pred             eEEeC
Q psy9278          94 KLQIW   98 (98)
Q Consensus        94 ~L~iw   98 (98)
                      .+.||
T Consensus       109 ~v~iw  113 (368)
T 3mmy_A          109 TAKMW  113 (368)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            99998

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.90  E-value=7.1e-05  Score=52.19  Aligned_cols=74  Identities=15%  Similarity=0.315  Sum_probs=58.4

Q ss_pred             hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      ......+.++.|-|+...+++.+    ..|.|.||+++.+++..  ...+..++.|..|-.+. ..+.|++|+.||.+.|
T Consensus        83 ~~h~~~v~~~~~~~~~~~l~s~~----~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~v  155 (368)
T 3mmy_A           83 QMHTGPVLDVCWSDDGSKVFTAS----CDKTAKMWDLSSNQAIQ--IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKF  155 (368)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTEEEE--EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEE
T ss_pred             ccccCCEEEEEECcCCCEEEEEc----CCCcEEEEEcCCCCcee--eccccCceEEEEEEeCC-CCCEEEEccCCCcEEE
Confidence            34567789999999887777655    57899999999887554  45588899999993322 2468999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       156 w  156 (368)
T 3mmy_A          156 W  156 (368)
T ss_dssp             E
T ss_pred             E
Confidence            8

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.90  E-value=4.4e-05  Score=54.48  Aligned_cols=73  Identities=15%  Similarity=0.298  Sum_probs=57.4

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-.++++.|=|...++++-|    ..|.|+||+++.+..+++..++ +..++.|..|.... ..+.||+|+.||.+.||
T Consensus         9 ~~~V~~~~~s~~g~~las~s----~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            9 NEMIHDAVMDYYGKRMATCS----SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVMIW   82 (297)
T ss_dssp             SSCEEEEEECTTSSEEEEEE----TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEETTTEEEEE
T ss_pred             cCceEEEEECCCCCEEEEEe----CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-cCCEEEEEcCCCEEEEE
Confidence            34688999999877776655    6799999999877666666665 78899999995431 13589999999999998

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.90  E-value=4.8e-05  Score=55.04  Aligned_cols=70  Identities=16%  Similarity=0.229  Sum_probs=56.3

Q ss_pred             cceeeeeeec--CCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          22 YQLFDCKWMP--CSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP--~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      -.+.++.|-|  ....|++.+    ..|.|.||+++.++...+.+.....++.|..|-..   .+.||+|+.||.+.||
T Consensus       126 ~~v~~~~~~~~~~~~~l~s~s----~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd---g~~lasg~~dg~i~iw  197 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYFIWAD----NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD---SLLLALYSPDGILDVY  197 (343)
T ss_dssp             SCEEEEECCC---CCEEEEEE----TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTT---SCEEEEECTTSCEEEE
T ss_pred             CCEEEEEcCCCCCCCEEEEEe----CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCC---CCEEEEEcCCCEEEEE
Confidence            4589999999  665555555    68999999999998866665666778999999654   5799999999999998

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.87  E-value=5.7e-05  Score=54.61  Aligned_cols=74  Identities=16%  Similarity=0.272  Sum_probs=60.7

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+-.++.+.|-|...++++.|+.   .|.|+||+++.++.....+. .+..++.|..|-..  ..+.||+|+.||.+.||
T Consensus        72 h~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~d~~i~iw  146 (383)
T 3ei3_B           72 FDRRVTSLEWHPTHPTTVAVGSK---GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF--NTNQLFVSSIRGATTLR  146 (383)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEEB---TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT--EEEEEEEEETTTEEEEE
T ss_pred             CCCCEEEEEECCCCCCEEEEEcC---CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC--CCCEEEEEeCCCEEEEE
Confidence            45678999999998677777754   78999999998887776664 58889999999442  35799999999999998

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.86  E-value=8.6e-05  Score=51.93  Aligned_cols=73  Identities=7%  Similarity=0.208  Sum_probs=56.6

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE--ecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT--VEKPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e--~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      ....+.+++|-|...++++.|.   ..|.|.||+++.++....-.  ..+...+.|..|-.+   .+.||+|+.||.+.+
T Consensus       114 ~~~~i~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i  187 (366)
T 3k26_A          114 HGNAINELKFHPRDPNLLLSVS---KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL---GEKIMSCGMDHSLKL  187 (366)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEE---TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT---SSEEEEEETTSCEEE
T ss_pred             CCCcEEEEEECCCCCCEEEEEe---CCCeEEEEEeecCeEEEEecccccccCceeEEEECCC---CCEEEEecCCCCEEE
Confidence            4567899999996666666664   37899999998886443332  247889999999653   478999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       188 ~  188 (366)
T 3k26_A          188 W  188 (366)
T ss_dssp             E
T ss_pred             E
Confidence            8

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.84  E-value=4.5e-05  Score=57.23  Aligned_cols=73  Identities=15%  Similarity=0.281  Sum_probs=59.4

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE-ecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT-VEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e-~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      +-.|..+.|=|...++|+.|+   ..|.|.||+++.++...+.. ..+..+|.|..|-.  .....||+|+.||.+.||
T Consensus       119 ~~~V~~l~~~P~~~~~lasGs---~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p--~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          119 DRRATSLAWHPTHPSTVAVGS---KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP--LNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             SSCEEEEEECSSCTTCEEEEE---TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECS--SCTTEEEEECSSSCEEEE
T ss_pred             CCCEEEEEEeCCCCCEEEEEe---CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeC--CCCCEEEEEeCCCEEEEe
Confidence            345788999999889999985   47999999998887665554 45888999999943  235689999999999998

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.84  E-value=3.9e-05  Score=56.42  Aligned_cols=82  Identities=12%  Similarity=0.230  Sum_probs=61.3

Q ss_pred             ceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecC---Cc-eeEEEEecccCceeeeecCCCCCCCceE
Q psy9278          11 QIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIND---GQ-PELVKTVEKPNAFKCGTFNASPLSERYL   86 (98)
Q Consensus        11 QIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~---~~-l~~~~e~e~~~~~KC~TFgaSsl~~r~l   86 (98)
                      +++.++.+...-.+..+.|-|...++++.|+   ..|.|+||+++.   +. ++......+..++.|..|-.   ..+.|
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l  126 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGS---DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP---NFDAF  126 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEE---TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT---TSSEE
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEec---CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC---CCCEE
Confidence            4455554556678999999994444455553   679999999977   54 33445556889999999964   35689


Q ss_pred             EEeecCceEEeC
Q psy9278          87 ATGDFEGKLQIW   98 (98)
Q Consensus        87 AtGdf~G~L~iw   98 (98)
                      |+|+.||.+.||
T Consensus       127 ~s~s~dg~i~vw  138 (437)
T 3gre_A          127 AVSSKDGQIIVL  138 (437)
T ss_dssp             EEEETTSEEEEE
T ss_pred             EEEeCCCEEEEE
Confidence            999999999998

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.83  E-value=3e-05  Score=57.38  Aligned_cols=69  Identities=17%  Similarity=0.361  Sum_probs=48.1

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEE---EEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELV---KTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~---~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-+.++.|.|.. ++++.+    ..|.|+||++..++...+   ...++..++.|..|-+.   .+.||+|+.||.+.||
T Consensus        95 ~~V~~~~~s~d~-~~l~~s----~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~~l~sgs~dg~v~iw  166 (357)
T 4g56_B           95 AGVTDVAWVSEK-GILVAS----DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD---GTQAVSGGKDFSVKVW  166 (357)
T ss_dssp             SCEEEEEEETTT-EEEEEE----TTSCEEEC--------CCCCEEECCCSSCEEEEEECSS---SSEEEEEETTSCEEEE
T ss_pred             CCEEEEEEcCCC-CEEEEE----CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC---CCEEEEEeCCCeEEEE
Confidence            458999999985 566544    468999999988865443   33457889999999543   4789999999999998

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.81  E-value=0.00013  Score=52.25  Aligned_cols=72  Identities=10%  Similarity=0.183  Sum_probs=55.1

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-.+.++.|-|....+++-+    ..|.|+||++..+......-..+...+.|..|-+.  ..+.||+|+.||.+.||
T Consensus        97 ~~~v~~~~~~~~~~~l~sgs----~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~--~~~~l~sgs~D~~v~iw  168 (304)
T 2ynn_A           97 PDYIRSIAVHPTKPYVLSGS----DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--DPSTFASGCLDRTVKVW  168 (304)
T ss_dssp             SSCEEEEEECSSSSEEEEEE----TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT--CTTEEEEEETTSEEEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEC----CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC--CCCEEEEEeCCCeEEEE
Confidence            34588999999987766555    67999999998774332223347788999999553  25689999999999998

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.80  E-value=6.9e-05  Score=52.45  Aligned_cols=72  Identities=11%  Similarity=0.146  Sum_probs=57.1

Q ss_pred             cCCcceeeeeeecCCc-cEEEEccccCCcccEEEEEe-cCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278          19 SLDYQLFDCKWMPCSA-KFIVLGMKPKGTGSIQMYEI-NDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQ   96 (98)
Q Consensus        19 sl~yT~fD~kWIP~SA-rfV~lG~~prgtG~iqIyeL-~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~   96 (98)
                      ...-.+..+.|-|... .+++.+    ..|.|.+|++ +.+++..+....+..++.|..|-.    .+.|++|+.||.+.
T Consensus        54 ~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~l~s~~~d~~i~  125 (342)
T 1yfq_A           54 RYKHPLLCCNFIDNTDLQIYVGT----VQGEILKVDLIGSPSFQALTNNEANLGICRICKYG----DDKLIAASWDGLIE  125 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEE----TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET----TTEEEEEETTSEEE
T ss_pred             ecCCceEEEEECCCCCcEEEEEc----CCCeEEEEEeccCCceEeccccCCCCceEEEEeCC----CCEEEEEcCCCeEE
Confidence            4566789999999966 455444    5789999999 888875554333778899999955    57899999999999


Q ss_pred             eC
Q psy9278          97 IW   98 (98)
Q Consensus        97 iw   98 (98)
                      +|
T Consensus       126 iw  127 (342)
T 1yfq_A          126 VI  127 (342)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.80  E-value=0.0001  Score=51.56  Aligned_cols=79  Identities=14%  Similarity=0.236  Sum_probs=58.3

Q ss_pred             hhhcCCcceeeeeeecC----CccEEEEccccCCcccEEEEEecCC-ceeEEEEec---ccCceeeeecCCCCCC-CceE
Q psy9278          16 VEKSLDYQLFDCKWMPC----SAKFIVLGMKPKGTGSIQMYEINDG-QPELVKTVE---KPNAFKCGTFNASPLS-ERYL   86 (98)
Q Consensus        16 i~ksl~yT~fD~kWIP~----SArfV~lG~~prgtG~iqIyeL~~~-~l~~~~e~e---~~~~~KC~TFgaSsl~-~r~l   86 (98)
                      +.+..+-.++.++|-|.    ...+++.+    +.|.|.||+++.+ .+..+....   +...+.|..|-..... .+.|
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~----~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   88 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATV----GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL   88 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEE----ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEEC----CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence            33455678999999995    44455555    4568999999855 455665554   4578999999666433 5789


Q ss_pred             EEeecCceEEeC
Q psy9278          87 ATGDFEGKLQIW   98 (98)
Q Consensus        87 AtGdf~G~L~iw   98 (98)
                      |+|+.||.+.||
T Consensus        89 ~~~~~dg~i~v~  100 (366)
T 3k26_A           89 AVAGSRGIIRII  100 (366)
T ss_dssp             EEEETTCEEEEE
T ss_pred             EEecCCCEEEEE
Confidence            999999999998

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.80  E-value=0.00018  Score=50.77  Aligned_cols=72  Identities=15%  Similarity=0.261  Sum_probs=58.0

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE-ecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT-VEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e-~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ....+.++.|-|....+++.+    ..|.|.||+++.+++..... ..+...+.|..|-..   .+.||+|+.+|.+.+|
T Consensus        51 h~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           51 HNGQVTGVDWAPDSNRIVTCG----TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN---EKKFAVGSGSRVISIC  123 (372)
T ss_dssp             CSSCEEEEEEETTTTEEEEEE----TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT---SSEEEEEETTSSEEEE
T ss_pred             CCCcccEEEEeCCCCEEEEEc----CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC---CCEEEEEeCCCEEEEE
Confidence            456789999999776666554    57899999999998665554 457889999999654   4799999999999987

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.78  E-value=0.00022  Score=50.59  Aligned_cols=74  Identities=12%  Similarity=0.180  Sum_probs=59.4

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ....+.++.|.|...++++.|.   ..|.|+||+++.++...  ..+.+..+.|..|-..+.....||+|+.+|.+.+|
T Consensus        98 ~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  171 (408)
T 4a11_B           98 HRYSVETVQWYPHDTGMFTSSS---FDKTLKVWDTNTLQTAD--VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC  171 (408)
T ss_dssp             CSSCEEEEEECTTCTTCEEEEE---TTSEEEEEETTTTEEEE--EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred             CCCcEEEEEEccCCCcEEEEEe---CCCeEEEeeCCCCccce--eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence            5678999999996655555552   47899999999876544  44577888999998887777899999999999998

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.77  E-value=3.9e-05  Score=55.04  Aligned_cols=78  Identities=15%  Similarity=0.187  Sum_probs=57.9

Q ss_pred             hhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc----eeEEEEe-cccCceeeeecCCC----CCCCce
Q psy9278          15 LVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ----PELVKTV-EKPNAFKCGTFNAS----PLSERY   85 (98)
Q Consensus        15 hi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~----l~~~~e~-e~~~~~KC~TFgaS----sl~~r~   85 (98)
                      ++-+..+-.++.+.|-|   ++++.|+   ..|.|.||+++.++    .+++..+ .+..++.|..|-..    ....+.
T Consensus        10 ~~~~~h~~~i~~~~~~~---~~l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN---SFTVSCS---GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EESSCSSSCEEEEEECS---SEEEEEE---TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhcCeEEEEecC---CeEEEEc---CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            33345567899999988   5666664   47999999999988    3333333 47788999999654    111279


Q ss_pred             EEEeecCceEEeC
Q psy9278          86 LATGDFEGKLQIW   98 (98)
Q Consensus        86 lAtGdf~G~L~iw   98 (98)
                      ||+|+.||.+.||
T Consensus        84 l~s~~~dg~i~iw   96 (397)
T 1sq9_A           84 VATTSFSGDLLFY   96 (397)
T ss_dssp             EEEEETTSCEEEE
T ss_pred             EEEEcCCCCEEEE
Confidence            9999999999998

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.76  E-value=8.2e-05  Score=53.29  Aligned_cols=72  Identities=14%  Similarity=0.146  Sum_probs=52.7

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc-eeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ-PELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~-l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      ....+.++.|-|....+++.+    ..|.|+||+++.++ ++.+... .+..++.|..|-..   .+.||+|+.||.+.|
T Consensus        54 h~~~v~~~~~s~~~~~l~s~s----~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i  126 (377)
T 3dwl_C           54 HDKIVTCVDWAPKSNRIVTCS----QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN---EDKFAVGSGARVISV  126 (377)
T ss_dssp             CSSCEEEEEECTTTCCEEEEE----TTSSEEEC------CCCCEEECCCCSSCEEEEECCTT---SSCCEEEESSSCEEE
T ss_pred             CCceEEEEEEeCCCCEEEEEe----CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCC---CCEEEEEecCCeEEE
Confidence            456789999999987777665    57899999999887 4444433 47889999999664   568999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       127 w  127 (377)
T 3dwl_C          127 C  127 (377)
T ss_dssp             C
T ss_pred             E
Confidence            8

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.76  E-value=0.00011  Score=54.86  Aligned_cols=71  Identities=13%  Similarity=0.153  Sum_probs=57.7

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ...+..+.|-|...++++.|+   ..|.|+||+++.+++.  ....+...+.|..|-  ....+-||+|+.||.+.+|
T Consensus       257 ~~~v~~v~fsp~g~~~lasgs---~D~~i~vwd~~~~~~~--~~~~H~~~V~~v~~s--p~~~~llas~s~D~~v~~w  327 (344)
T 4gqb_B          257 SQCVTGLVFSPHSVPFLASLS---EDCSLAVLDSSLSELF--RSQAHRDFVRDATWS--PLNHSLLTTVGWDHQVVHH  327 (344)
T ss_dssp             SSCEEEEEECSSSSCCEEEEE---TTSCEEEECTTCCEEE--EECCCSSCEEEEEEC--SSSTTEEEEEETTSCEEEE
T ss_pred             CCCEEEEEEccCCCeEEEEEe---CCCeEEEEECCCCcEE--EEcCCCCCEEEEEEe--CCCCeEEEEEcCCCeEEEE
Confidence            456889999999999888775   4689999999988754  445588899999993  3345678999999999998

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.76  E-value=0.00016  Score=50.54  Aligned_cols=74  Identities=11%  Similarity=0.318  Sum_probs=57.8

Q ss_pred             cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc-----------------eeEEEEec-ccCceeeeecCCCC
Q psy9278          19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ-----------------PELVKTVE-KPNAFKCGTFNASP   80 (98)
Q Consensus        19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~-----------------l~~~~e~e-~~~~~KC~TFgaSs   80 (98)
                      .....+..+.|-|....+++.|.   ..|.|.||+++.++                 ++++.+.+ +..++.|..|-.. 
T Consensus       257 ~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-  332 (357)
T 3i2n_A          257 AHKSTVWQVRHLPQNRELFLTAG---GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD-  332 (357)
T ss_dssp             CCSSCEEEEEEETTEEEEEEEEE---TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS-
T ss_pred             CCcCCEEEEEECCCCCcEEEEEe---CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC-
Confidence            34667899999999886666663   47899999998653                 35666665 7788999999654 


Q ss_pred             CCCceEE-EeecCceEEeC
Q psy9278          81 LSERYLA-TGDFEGKLQIW   98 (98)
Q Consensus        81 l~~r~lA-tGdf~G~L~iw   98 (98)
                        .+.|| +|+.||.+.||
T Consensus       333 --~~~l~~s~~~d~~i~iw  349 (357)
T 3i2n_A          333 --KRGLCVCSSFDQTVRVL  349 (357)
T ss_dssp             --STTEEEEEETTSEEEEE
T ss_pred             --CCeEEEEecCCCcEEEE
Confidence              46787 89999999998

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.74  E-value=0.00025  Score=48.88  Aligned_cols=72  Identities=13%  Similarity=0.200  Sum_probs=56.5

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ....+..+.|.|....+++.+..  ..|.|.||++..++  ++.+++ +..++.|..|-+.   .+.||||+.||.+.||
T Consensus       239 ~~~~v~~~~~~~~~~~~~~~sg~--~d~~i~iwd~~~~~--~~~~l~gH~~~V~~l~~spd---g~~l~S~s~D~~v~iW  311 (318)
T 4ggc_A          239 AHSQVCSILWSPHYKELISGHGF--AQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPD---GATVASAAADETLRLW  311 (318)
T ss_dssp             CSSCEEEEEEETTTTEEEEEECT--TTCCEEEEETTTCC--EEEEECCCSSCEEEEEECTT---SSCEEEEETTTEEEEE
T ss_pred             ceeeeeeeeecccccceEEEEEc--CCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCC---CCEEEEEecCCeEEEE
Confidence            34456788899999888876422  36889999998775  456666 7889999999543   4689999999999999

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.73  E-value=0.0003  Score=48.02  Aligned_cols=76  Identities=14%  Similarity=0.229  Sum_probs=57.2

Q ss_pred             cCCcceeeeeeecCC-ccEEEEccccCCcccEEEEEecCCce-------eEEEEec-ccCceeeeecCCCCCCCceEEEe
Q psy9278          19 SLDYQLFDCKWMPCS-AKFIVLGMKPKGTGSIQMYEINDGQP-------ELVKTVE-KPNAFKCGTFNASPLSERYLATG   89 (98)
Q Consensus        19 sl~yT~fD~kWIP~S-ArfV~lG~~prgtG~iqIyeL~~~~l-------~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtG   89 (98)
                      .....+..+.|-|.. .++++.|.   ..|.|.||+++.++.       +.+...+ +..++.|..|-... ..+.||+|
T Consensus        55 ~~~~~v~~~~~~~~~d~~~l~s~~---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~  130 (351)
T 3f3f_A           55 AHDSSIVAIDWASPEYGRIIASAS---YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH-LGLKLACL  130 (351)
T ss_dssp             CCSSCEEEEEECCGGGCSEEEEEE---TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGG-GCSEEEEE
T ss_pred             cCCCcEEEEEEcCCCCCCEEEEEc---CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCC-CCcEEEEe
Confidence            456678999999962 55555553   378999999988753       5566554 77889999995541 14689999


Q ss_pred             ecCceEEeC
Q psy9278          90 DFEGKLQIW   98 (98)
Q Consensus        90 df~G~L~iw   98 (98)
                      +-||.+.||
T Consensus       131 ~~dg~v~iw  139 (351)
T 3f3f_A          131 GNDGILRLY  139 (351)
T ss_dssp             ETTCEEEEE
T ss_pred             cCCCcEEEe
Confidence            999999998

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.73  E-value=0.00025  Score=49.92  Aligned_cols=70  Identities=20%  Similarity=0.514  Sum_probs=55.5

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ....+.++.|-|....+++.+    ..|.|+||+++.++..  ..++ +...+.|..|-..   .+.||+|+.||.+.||
T Consensus        64 h~~~v~~~~~~~~~~~l~s~~----~d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~---~~~l~s~~~d~~i~iw  134 (312)
T 4ery_A           64 HKLGISDVAWSSDSNLLVSAS----DDKTLKIWDVSSGKCL--KTLKGHSNYVFCCNFNPQ---SNLIVSGSFDESVRIW  134 (312)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCCEE--EEEECCSSCEEEEEECSS---SSEEEEEETTSCEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEC----CCCEEEEEECCCCcEE--EEEcCCCCCEEEEEEcCC---CCEEEEEeCCCcEEEE
Confidence            456688999999887776665    5789999999888643  3333 6778999999654   4689999999999998

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.72  E-value=0.00025  Score=51.69  Aligned_cols=72  Identities=15%  Similarity=0.266  Sum_probs=59.0

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..-.+..+.|-|....+++-+    ..|.|+||++..++...+..++ +...+.|..|-..   .+.||+|+-||.+.||
T Consensus       149 h~~~v~~~~~~p~~~~l~s~s----~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~---g~~l~s~s~D~~v~iW  221 (345)
T 3fm0_A          149 HTQDVKHVVWHPSQELLASAS----YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS---GQRLASCSDDRTVRIW  221 (345)
T ss_dssp             CCSCEEEEEECSSSSCEEEEE----TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred             cCCCeEEEEECCCCCEEEEEe----CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC---CCEEEEEeCCCeEEEe
Confidence            345678899999887666554    5789999999999887777666 7788999999654   4789999999999998

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.72  E-value=0.00032  Score=48.40  Aligned_cols=72  Identities=15%  Similarity=0.363  Sum_probs=56.1

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ....+..+.|-|....+++.+    ..|.|.+|+++.++...+.... +...+.|..|-..   .+.|++|+.+|.+.+|
T Consensus        96 ~~~~v~~~~~~~~~~~l~~~~----~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~v~~~  168 (337)
T 1gxr_A           96 RDNYIRSCKLLPDGCTLIVGG----EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD---SKVCFSCCSDGNIAVW  168 (337)
T ss_dssp             TTSBEEEEEECTTSSEEEEEE----SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEc----CCCcEEEEECCCCCcceeeecccCCCceEEEEECCC---CCEEEEEeCCCcEEEE
Confidence            456688999999876666554    4689999999999876666555 6677899988653   5789999999999998

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.00012  Score=51.49  Aligned_cols=72  Identities=17%  Similarity=0.309  Sum_probs=54.9

Q ss_pred             CCcceeeeeeecC---CccEEEEccccCCcccEEEEEecCCc----eeEEEEecccCceeeeecCCCCCCCceEEEeecC
Q psy9278          20 LDYQLFDCKWMPC---SAKFIVLGMKPKGTGSIQMYEINDGQ----PELVKTVEKPNAFKCGTFNASPLSERYLATGDFE   92 (98)
Q Consensus        20 l~yT~fD~kWIP~---SArfV~lG~~prgtG~iqIyeL~~~~----l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~   92 (98)
                      ....+.++.|-|.   ...+++.+    ..|.|.||+++.++    ..+......+..+.|..|-..   .+.||+|+-|
T Consensus       205 h~~~v~~~~~sp~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~d  277 (379)
T 3jrp_A          205 HSDWVRDVAWSPTVLLRSYLASVS----QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS---GNVLALSGGD  277 (379)
T ss_dssp             CSSCEEEEEECCCCSSSEEEEEEE----TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS---SCCEEEEESS
T ss_pred             ccCcEeEEEECCCCCCCCeEEEEe----CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCC---CCEEEEecCC
Confidence            3556889999999   45555444    57899999999884    344444447788999999554   4689999999


Q ss_pred             ceEEeC
Q psy9278          93 GKLQIW   98 (98)
Q Consensus        93 G~L~iw   98 (98)
                      |.+.||
T Consensus       278 g~i~iw  283 (379)
T 3jrp_A          278 NKVTLW  283 (379)
T ss_dssp             SSEEEE
T ss_pred             CcEEEE
Confidence            999998

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.00023  Score=51.63  Aligned_cols=69  Identities=14%  Similarity=0.397  Sum_probs=55.1

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec---ccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE---KPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e---~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      .-.++.+.|-|.   +++.|+   ..|.|+||+++.++.+++..++   +..++.|..|-+.   .+.||+|+.||.+.|
T Consensus        14 ~~~v~~~~~s~~---~las~~---~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~---~~~las~s~D~~v~i   84 (330)
T 2hes_X           14 KEKIWSFDFSQG---ILATGS---TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH---TSLLAAGSFDSTVSI   84 (330)
T ss_dssp             SSCEEEEEEETT---EEEEEE---SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT---SSEEEEEETTSCEEE
T ss_pred             CCceeeeccCCC---EEEEEc---CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC---CCEEEEEeCCCcEEE
Confidence            456788889887   455552   5799999999988777777662   6778999999654   468999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus        85 w   85 (330)
T 2hes_X           85 W   85 (330)
T ss_dssp             E
T ss_pred             E
Confidence            8

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.71  E-value=0.00011  Score=53.98  Aligned_cols=73  Identities=21%  Similarity=0.424  Sum_probs=56.8

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCce-----eEEEEec-ccCceeeeecCCCCCCCceEEEeecCce
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP-----ELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGK   94 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l-----~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~   94 (98)
                      .-.+.++.|-|...++++.|+   ..|.|.||+++.+++     +.+..++ +...+.|..|-...  ++.||+|+.||.
T Consensus        81 ~~~V~~~~~~p~~~~~l~s~s---~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~--~~~l~s~~~dg~  155 (402)
T 2aq5_A           81 TAPVLDIAWCPHNDNVIASGS---EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA--QNVLLSAGCDNV  155 (402)
T ss_dssp             SSCEEEEEECTTCTTEEEEEE---TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB--TTEEEEEETTSC
T ss_pred             CCCEEEEEeCCCCCCEEEEEe---CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC--CCEEEEEcCCCE
Confidence            457899999995556666664   468999999998864     3444444 78899999995542  468999999999


Q ss_pred             EEeC
Q psy9278          95 LQIW   98 (98)
Q Consensus        95 L~iw   98 (98)
                      +.||
T Consensus       156 i~iw  159 (402)
T 2aq5_A          156 ILVW  159 (402)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.70  E-value=0.00025  Score=51.39  Aligned_cols=71  Identities=15%  Similarity=0.363  Sum_probs=55.0

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCC--ceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDG--QPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~--~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      .-.+.++.|-|....+++.+    ..|.|+||+++.+  ..+++..++ +...+.|..|-..   .+.||+|+.||.+.|
T Consensus       107 ~~~V~~v~~sp~g~~las~s----~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~---~~~l~s~s~D~~i~i  179 (330)
T 2hes_X          107 ENEVKGVAWSNDGYYLATCS----RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS---EALLASSSYDDTVRI  179 (330)
T ss_dssp             --CEEEEEECTTSCEEEEEE----TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS---SSEEEEEETTSCEEE
T ss_pred             CCcEEEEEECCCCCEEEEEe----CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC---CCEEEEEcCCCeEEE
Confidence            45688999999877666555    5789999999533  456666554 7788999999654   468999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       180 W  180 (330)
T 2hes_X          180 W  180 (330)
T ss_dssp             E
T ss_pred             E
Confidence            8

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.69  E-value=8e-05  Score=53.54  Aligned_cols=75  Identities=13%  Similarity=0.300  Sum_probs=59.4

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe--cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV--EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~--e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ...+.++.|-|...++++.|..-.+.|.|.||++..++. .+...  .+..++.|..|-..  ..+.||+|+.||.+.||
T Consensus       214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~--~~~~l~s~~~dg~v~~w  290 (416)
T 2pm9_A          214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQ--DEHLLLSSGRDNTVLLW  290 (416)
T ss_dssp             CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSS--CSSCEEEEESSSEEEEE
T ss_pred             CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCC--CCCeEEEEeCCCCEEEe
Confidence            567899999999988888887666667999999988642 22233  47788999998542  35789999999999998

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=97.69  E-value=0.00031  Score=52.21  Aligned_cols=85  Identities=8%  Similarity=0.127  Sum_probs=61.5

Q ss_pred             ceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEE--Ee-cccCceeeeecCCCCCCCceEE
Q psy9278          11 QIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVK--TV-EKPNAFKCGTFNASPLSERYLA   87 (98)
Q Consensus        11 QIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~--e~-e~~~~~KC~TFgaSsl~~r~lA   87 (98)
                      ++........+..+..++|-|....+++.+..-.....+.+|++..+......  .+ .+..++.|..|-.   ..+.||
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp---dg~~la  285 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM---KGELAV  285 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT---TSCEEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC---CCCceE
Confidence            33333444456788999999998877766544344457899999888655443  33 3677899999944   357999


Q ss_pred             EeecCceEEeC
Q psy9278          88 TGDFEGKLQIW   98 (98)
Q Consensus        88 tGdf~G~L~iw   98 (98)
                      +|+.||.+.||
T Consensus       286 sgs~D~~V~iw  296 (365)
T 4h5i_A          286 LASNDNSIALV  296 (365)
T ss_dssp             EEETTSCEEEE
T ss_pred             EEcCCCEEEEE
Confidence            99999999998

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.66  E-value=0.00021  Score=51.59  Aligned_cols=75  Identities=8%  Similarity=0.215  Sum_probs=58.5

Q ss_pred             hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCcee---EEEEec-ccCceeeeecCCCCCCCceEEEeecCc
Q psy9278          18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPE---LVKTVE-KPNAFKCGTFNASPLSERYLATGDFEG   93 (98)
Q Consensus        18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~---~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G   93 (98)
                      +...-.+..+.|-|...++++.|+   ..|.|.+|+++.++.+   .+...+ +..++.|..|-+.   .+.||+|+.||
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s---~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d---g~~l~s~s~D~   87 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSAS---RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD---GAYALSASWDK   87 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEE---TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT---SSEEEEEETTS
T ss_pred             ccccceEEEEEccCCCccEEEEec---CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC---CCEEEEEeCCC
Confidence            445667899999998877777764   5789999999765433   244444 7889999999654   57999999999


Q ss_pred             eEEeC
Q psy9278          94 KLQIW   98 (98)
Q Consensus        94 ~L~iw   98 (98)
                      .+.||
T Consensus        88 ~v~~w   92 (319)
T 3frx_A           88 TLRLW   92 (319)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99998

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.66  E-value=0.00026  Score=49.82  Aligned_cols=73  Identities=14%  Similarity=0.192  Sum_probs=57.3

Q ss_pred             hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      +..+-.+..+.|-|....+++.+    ..|.|+||++..+++...- ..+..++.|..|-..   .+.||+|+-||.+.|
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~----~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSS----ADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSD---SNLLVSASDDKTLKI   91 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT---SSEEEEEETTSEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEee----CCCeEEEEeCCCcccchhh-ccCCCceEEEEEcCC---CCEEEEECCCCEEEE
Confidence            34456789999999887766655    6789999999888754332 236778999999654   479999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus        92 w   92 (312)
T 4ery_A           92 W   92 (312)
T ss_dssp             E
T ss_pred             E
Confidence            8

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.66  E-value=0.00041  Score=48.31  Aligned_cols=75  Identities=12%  Similarity=0.281  Sum_probs=58.2

Q ss_pred             hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCcee---EEEEec-ccCceeeeecCCCCCCCceEEEeecCc
Q psy9278          18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPE---LVKTVE-KPNAFKCGTFNASPLSERYLATGDFEG   93 (98)
Q Consensus        18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~---~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G   93 (98)
                      +..+-.|.++.|-|...++++-|+   ..|.|.||+++.++..   .+..++ +..++.|..|-+.   .+.||+|+.||
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s---~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d---g~~l~s~~~d~  108 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSAS---RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD---GQFALSGSWDG  108 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEE---TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT---SSEEEEEETTS
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEc---CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC---CCEEEEEcccc
Confidence            345667899999999888887775   4689999999887532   333333 6789999999553   57899999999


Q ss_pred             eEEeC
Q psy9278          94 KLQIW   98 (98)
Q Consensus        94 ~L~iw   98 (98)
                      .+.+|
T Consensus       109 ~i~~~  113 (340)
T 4aow_A          109 TLRLW  113 (340)
T ss_dssp             EEEEE
T ss_pred             cceEE
Confidence            99887

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.66  E-value=0.00034  Score=48.31  Aligned_cols=70  Identities=13%  Similarity=0.284  Sum_probs=56.7

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ....+.++.|-|....+++.+    ..|.|.||+++.++..  ....+..++.+..|-..   .+.||+|+-||.+.||
T Consensus       264 ~~~~v~~~~~~~~~~~l~~~~----~dg~i~~~~~~~~~~~--~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iw  333 (337)
T 1gxr_A          264 HESCVLSLKFAYCGKWFVSTG----KDNLLNAWRTPYGASI--FQSKESSSVLSCDISVD---DKYIVTGSGDKKATVY  333 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCCEE--EEEECSSCEEEEEECTT---SCEEEEEETTSCEEEE
T ss_pred             CccceeEEEECCCCCEEEEec----CCCcEEEEECCCCeEE--EEecCCCcEEEEEECCC---CCEEEEecCCCeEEEE
Confidence            345688999999887776665    4789999999988765  44557788999988654   4789999999999998

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.66  E-value=0.0002  Score=52.50  Aligned_cols=72  Identities=10%  Similarity=0.206  Sum_probs=56.8

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE-ecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT-VEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e-~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-.+..+.|-|...++++.|+   ..|.|.||+++.++....-. ..++..+.|..|-..   .+.||+|+.||.+.||
T Consensus       131 ~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iw  203 (402)
T 2aq5_A          131 TKRVGIVAWHPTAQNVLLSAG---CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD---GALICTSCRDKRVRVI  203 (402)
T ss_dssp             SSCEEEEEECSSBTTEEEEEE---TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT---SSCEEEEETTSEEEEE
T ss_pred             CCeEEEEEECcCCCCEEEEEc---CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC---CCEEEEEecCCcEEEE
Confidence            456889999999876666664   46899999999886543332 347889999999653   5689999999999998

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.65  E-value=0.00022  Score=52.59  Aligned_cols=69  Identities=14%  Similarity=0.258  Sum_probs=53.3

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+..+.++.|-|....+++.+    ..|.|+||+++.++....-. .+...+.|..|     ..+.|++|+.||.+.+|
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~-----~~~~l~~~~~dg~i~i~  201 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGL----GNGLVDIYDVESQTKLRTMA-GHQARVGCLSW-----NRHVLSSGSRSGAIHHH  201 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEEEEC-CCSSCEEEEEE-----ETTEEEEEETTSEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEC----CCCeEEEEECcCCeEEEEec-CCCCceEEEEE-----CCCEEEEEcCCCCEEEE
Confidence            456789999999766555544    47899999998876433222 47888999999     24699999999999998

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.64  E-value=0.00036  Score=49.83  Aligned_cols=69  Identities=16%  Similarity=0.322  Sum_probs=55.0

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ...+..++|.|....+++-+    ..|.|+||+++.++..  .+++ ++..+.|..|-+.   .+.||+|+.||.+.||
T Consensus        55 ~~~v~~~~~~~~~~~l~s~s----~d~~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~---~~~l~sgs~D~~v~lW  124 (304)
T 2ynn_A           55 ETPVRAGKFIARKNWIIVGS----DDFRIRVFNYNTGEKV--VDFEAHPDYIRSIAVHPT---KPYVLSGSDDLTVKLW  124 (304)
T ss_dssp             SSCEEEEEEEGGGTEEEEEE----TTSEEEEEETTTCCEE--EEEECCSSCEEEEEECSS---SSEEEEEETTSCEEEE
T ss_pred             CCcEEEEEEeCCCCEEEEEC----CCCEEEEEECCCCcEE--EEEeCCCCcEEEEEEcCC---CCEEEEECCCCeEEEE
Confidence            45678999999887666554    5799999999988643  3343 7888999999655   4689999999999998

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.63  E-value=0.00026  Score=51.09  Aligned_cols=73  Identities=8%  Similarity=0.262  Sum_probs=57.9

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc--eeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ--PELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~--l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-.+.++.|-|....+++.|+   ..|.|.||++..++  -+++...++...+.|..|-..  ..+.||+|+.||.+.||
T Consensus       204 ~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~~l~~~~~d~~i~iw  278 (383)
T 3ei3_B          204 KAKVTHAEFNPRCDWLMATSS---VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPT--DSTKLLTTDQRNEIRVY  278 (383)
T ss_dssp             SSCEEEEEECSSCTTEEEEEE---TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTT--TSCEEEEEESSSEEEEE
T ss_pred             CCcEEEEEECCCCCCEEEEEe---CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCC--CCCEEEEEcCCCcEEEE
Confidence            456889999999985666653   47899999998754  345666678899999999651  25789999999999998

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=97.60  E-value=0.00026  Score=52.66  Aligned_cols=68  Identities=16%  Similarity=0.151  Sum_probs=52.3

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-c-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-E-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..+..+.|=|... +++.|+   ..|.|+||+++.++  ++..+ + +..++.|..|-+.   .+.||+|+.||.++||
T Consensus       270 ~~V~~~~~Spdg~-~lasgs---~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpd---g~~laS~S~D~tvrvw  339 (365)
T 4h5i_A          270 KGITSMDVDMKGE-LAVLAS---NDNSIALVKLKDLS--MSKIFKQAHSFAITEVTISPD---STYVASVSAANTIHII  339 (365)
T ss_dssp             SCEEEEEECTTSC-EEEEEE---TTSCEEEEETTTTE--EEEEETTSSSSCEEEEEECTT---SCEEEEEETTSEEEEE
T ss_pred             CCeEeEEECCCCC-ceEEEc---CCCEEEEEECCCCc--EEEEecCcccCCEEEEEECCC---CCEEEEEeCCCeEEEE
Confidence            3467788888765 555554   47899999998765  44444 2 7889999999443   5799999999999998

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.60  E-value=8.4e-05  Score=55.84  Aligned_cols=84  Identities=12%  Similarity=0.208  Sum_probs=59.4

Q ss_pred             cceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecC--------CceeEEEEec-ccCceeeeecCCCC
Q psy9278          10 PQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIND--------GQPELVKTVE-KPNAFKCGTFNASP   80 (98)
Q Consensus        10 PQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~--------~~l~~~~e~e-~~~~~KC~TFgaSs   80 (98)
                      |++...........+..++|.|+..++++.|.   ..|.|.||+++.        ++.+.+..+. +...+.|..|-...
T Consensus       117 ~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~---~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  193 (430)
T 2xyi_A          117 GKIEIEIKINHEGEVNRARYMPQNACVIATKT---PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL  193 (430)
T ss_dssp             -CEEEEEEEEESSCCSEEEEETTEEEEEEEEC---SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS
T ss_pred             CceEEEEEEcCCCcEEEEEECCCCCcEEEEEC---CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC
Confidence            33433333344578999999998777777774   468999999986        3344444443 66778888885442


Q ss_pred             CCCceEEEeecCceEEeC
Q psy9278          81 LSERYLATGDFEGKLQIW   98 (98)
Q Consensus        81 l~~r~lAtGdf~G~L~iw   98 (98)
                        ...||+|+.||.+.||
T Consensus       194 --~~~l~s~~~dg~i~vw  209 (430)
T 2xyi_A          194 --NGYLLSASDDHTICLW  209 (430)
T ss_dssp             --TTEEEEECTTSCEEEE
T ss_pred             --CCeEEEEeCCCeEEEE
Confidence              4489999999999998

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.60  E-value=0.00028  Score=50.81  Aligned_cols=76  Identities=9%  Similarity=0.154  Sum_probs=57.2

Q ss_pred             cCCcceeeeeeecC-CccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278          19 SLDYQLFDCKWMPC-SAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQ   96 (98)
Q Consensus        19 sl~yT~fD~kWIP~-SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~   96 (98)
                      ...-.++++.|-|. ..++++.|+   ..|.|+||+++.++.+.+...+ +..++.|..|-... ....||+|+.||.+.
T Consensus        55 gH~~~V~~v~~~~~~~~~~l~s~s---~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~-~g~~lasgs~D~~i~  130 (316)
T 3bg1_A           55 GHEGPVWQVAWAHPMYGNILASCS---YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHD-YGLILACGSSDGAIS  130 (316)
T ss_dssp             CCSSCEEEEEECCGGGSSCEEEEE---TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTT-TCSCEEEECSSSCEE
T ss_pred             CCCccEEEEEeCCCCCCCEEEEEE---CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCC-CCcEEEEEcCCCCEE
Confidence            34567899999864 244444443   5789999999988776666654 77889999996542 135799999999999


Q ss_pred             eC
Q psy9278          97 IW   98 (98)
Q Consensus        97 iw   98 (98)
                      ||
T Consensus       131 lw  132 (316)
T 3bg1_A          131 LL  132 (316)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.59  E-value=0.0004  Score=50.08  Aligned_cols=70  Identities=9%  Similarity=0.266  Sum_probs=56.0

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ....+.++.|-|....+++.+    ..|.|+||++..++.  +.++ .+..++.|..|-..   ...||+|+.||.+.||
T Consensus        64 h~~~v~~~~~s~dg~~l~s~s----~D~~v~~wd~~~~~~--~~~~~~h~~~v~~~~~~~~---~~~l~s~s~D~~i~vw  134 (319)
T 3frx_A           64 HSHIVQDCTLTADGAYALSAS----WDKTLRLWDVATGET--YQRFVGHKSDVMSVDIDKK---ASMIISGSRDKTIKVW  134 (319)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTEE--EEEEECCSSCEEEEEECTT---SCEEEEEETTSCEEEE
T ss_pred             CcccEEEEEECCCCCEEEEEe----CCCEEEEEECCCCCe--eEEEccCCCcEEEEEEcCC---CCEEEEEeCCCeEEEE
Confidence            345688999999987777665    679999999998864  3333 37888999999554   4689999999999998

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.59  E-value=0.00024  Score=50.40  Aligned_cols=74  Identities=12%  Similarity=0.311  Sum_probs=55.7

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe------------cccCceeeeecCCCCCCCceEE
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV------------EKPNAFKCGTFNASPLSERYLA   87 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~------------e~~~~~KC~TFgaSsl~~r~lA   87 (98)
                      .+-.+..+.|-|...++++.|.   ..|.|.||+++.++.......            .+..++.|..|-..  ..+.||
T Consensus        42 h~~~v~~~~~s~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~  116 (408)
T 4a11_B           42 HGGGINTLDIEPVEGRYMLSGG---SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH--DTGMFT  116 (408)
T ss_dssp             CSSCEEEEEECTTTCCEEEEEE---TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT--CTTCEE
T ss_pred             cCCcEEEEEEecCCCCEEEEEc---CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC--CCcEEE
Confidence            4568899999994445555553   479999999998865444332            27788999999542  356899


Q ss_pred             EeecCceEEeC
Q psy9278          88 TGDFEGKLQIW   98 (98)
Q Consensus        88 tGdf~G~L~iw   98 (98)
                      +|+.||.+.||
T Consensus       117 s~~~d~~i~iw  127 (408)
T 4a11_B          117 SSSFDKTLKVW  127 (408)
T ss_dssp             EEETTSEEEEE
T ss_pred             EEeCCCeEEEe
Confidence            99999999998

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.58  E-value=0.00046  Score=50.76  Aligned_cols=71  Identities=15%  Similarity=0.417  Sum_probs=56.1

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-.+..+.|-|...++++.+    +.|.|+||+++.+++  +..++ +...+.|..|..+.. ...||+|+.||.+.+|
T Consensus       154 ~~~v~~~~~~~~~~~l~t~s----~D~~v~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~-g~~l~sgs~Dg~v~~w  225 (354)
T 2pbi_B          154 TNYLSACSFTNSDMQILTAS----GDGTCALWDVESGQL--LQSFHGHGADVLCLDLAPSET-GNTFVSGGCDKKAMVW  225 (354)
T ss_dssp             SSCEEEEEECSSSSEEEEEE----TTSEEEEEETTTCCE--EEEEECCSSCEEEEEECCCSS-CCEEEEEETTSCEEEE
T ss_pred             CCcEEEEEEeCCCCEEEEEe----CCCcEEEEeCCCCeE--EEEEcCCCCCeEEEEEEeCCC-CCEEEEEeCCCeEEEE
Confidence            34578999999988888766    689999999998864  33343 677899998865532 3589999999999998

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.58  E-value=0.00036  Score=51.74  Aligned_cols=70  Identities=14%  Similarity=0.517  Sum_probs=55.7

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-.++++.|-|....+++.+    ..|.|.||++..++....  ++...++.|..|-..  ..+.||+|+.||.+.||
T Consensus       165 ~~~v~~~~~~p~~~~l~s~s----~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~--~~~~l~~~s~d~~v~iw  234 (393)
T 1erj_A          165 EQDIYSLDYFPSGDKLVSGS----GDRTVRIWDLRTGQCSLT--LSIEDGVTTVAVSPG--DGKYIAAGSLDRAVRVW  234 (393)
T ss_dssp             SSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTEEEEE--EECSSCEEEEEECST--TCCEEEEEETTSCEEEE
T ss_pred             CCCEEEEEEcCCCCEEEEec----CCCcEEEEECCCCeeEEE--EEcCCCcEEEEEECC--CCCEEEEEcCCCcEEEE
Confidence            45689999999988877665    579999999998875443  445677888888542  35789999999999998

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.56  E-value=0.00048  Score=47.20  Aligned_cols=70  Identities=11%  Similarity=0.108  Sum_probs=55.4

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..-.+.++.| |....+++.+    ..|.|.||+++.+++..... .+...+.|..|-..   .+.||+|+.||.+.+|
T Consensus        17 h~~~v~~~~~-~~~~~l~s~~----~dg~v~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~   86 (313)
T 3odt_A           17 HDQDVRDVVA-VDDSKVASVS----RDGTVRLWSKDDQWLGTVVY-TGQGFLNSVCYDSE---KELLLFGGKDTMINGV   86 (313)
T ss_dssp             CSSCEEEEEE-EETTEEEEEE----TTSEEEEEEESSSEEEEEEE-ECSSCEEEEEEETT---TTEEEEEETTSCEEEE
T ss_pred             CCCCcEEEEe-cCCCEEEEEE----cCCcEEEEECCCCEEEEEee-cCCccEEEEEECCC---CCEEEEecCCCeEEEE
Confidence            4567889999 8887777665    67999999998876554433 35788999999654   5799999999999987

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.56  E-value=0.00051  Score=49.82  Aligned_cols=73  Identities=14%  Similarity=0.244  Sum_probs=54.2

Q ss_pred             hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      ......+..+.|-|....++ .|.   ..|.|.||++..++....- ..+..++.|..|-..   .+.||+|+.||.+.|
T Consensus       267 ~~~~~~v~~~~~s~~g~~l~-~g~---~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~s~d---g~~l~s~s~D~~i~i  338 (340)
T 1got_B          267 DNIICGITSVSFSKSGRLLL-AGY---DDFNCNVWDALKADRAGVL-AGHDNRVSCLGVTDD---GMAVATGSWDSFLKI  338 (340)
T ss_dssp             TTCCSCEEEEEECTTSSEEE-EEE---TTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTT---SSCEEEEETTSCEEE
T ss_pred             CCcccceEEEEECCCCCEEE-EEC---CCCeEEEEEcccCcEeeEe-ecCCCcEEEEEEcCC---CCEEEEEcCCccEEe
Confidence            34455688899999775554 443   5789999999877643221 237789999999543   478999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       339 W  339 (340)
T 1got_B          339 W  339 (340)
T ss_dssp             E
T ss_pred             c
Confidence            8

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.52  E-value=0.00062  Score=48.74  Aligned_cols=72  Identities=21%  Similarity=0.459  Sum_probs=55.1

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec--------------ccCceeeeecCCCCCCCceE
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE--------------KPNAFKCGTFNASPLSERYL   86 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e--------------~~~~~KC~TFgaSsl~~r~l   86 (98)
                      +..+..+.|-|.. ++++.|..-.+.|.|.||++..++.  +.+++              +...+.|..|-..   .+.|
T Consensus       233 ~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l  306 (397)
T 1sq9_A          233 SNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGER--IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS---GETL  306 (397)
T ss_dssp             CCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCE--EEEECBC--------CCBSBSSCEEEEEECSS---SSEE
T ss_pred             CCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcc--cceeccCcccccccccccccCCcEEEEEECCC---CCEE
Confidence            5678899999985 4555665444559999999988754  33333              6788999999654   4789


Q ss_pred             EEeecCceEEeC
Q psy9278          87 ATGDFEGKLQIW   98 (98)
Q Consensus        87 AtGdf~G~L~iw   98 (98)
                      |+|+-||.|.||
T Consensus       307 ~~~~~dg~i~iw  318 (397)
T 1sq9_A          307 CSAGWDGKLRFW  318 (397)
T ss_dssp             EEEETTSEEEEE
T ss_pred             EEEeCCCeEEEE
Confidence            999999999998

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.00059  Score=47.51  Aligned_cols=71  Identities=13%  Similarity=0.236  Sum_probs=55.0

Q ss_pred             cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      ..+-.+..+.|-|....+++.+    ..|.|.||+++.++.  +..++ +..++.|..|-.   ..+.||+|+.||.+.|
T Consensus        30 ~h~~~v~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~---~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           30 GHERPLTQVKYNKEGDLLFSCS----KDSSASVWYSLNGER--LGTLDGHTGTIWSIDVDC---FTKYCVTGSADYSIKL  100 (369)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEE----SSSCEEEEETTTCCE--EEEECCCSSCEEEEEECT---TSSEEEEEETTTEEEE
T ss_pred             EeeceEEEEEEcCCCCEEEEEe----CCCEEEEEeCCCchh--hhhhhhcCCcEEEEEEcC---CCCEEEEEeCCCeEEE
Confidence            3456689999999776555544    578999999988764  34444 778899999954   3579999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       101 w  101 (369)
T 3zwl_B          101 W  101 (369)
T ss_dssp             E
T ss_pred             E
Confidence            8

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=97.51  E-value=0.00037  Score=50.48  Aligned_cols=74  Identities=14%  Similarity=0.358  Sum_probs=55.3

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCC-------CCceEEEeecC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPL-------SERYLATGDFE   92 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl-------~~r~lAtGdf~   92 (98)
                      ...++++.|-|....+++.|    ..|.|+||++.........+. .+...+.|..|-....       ....||+|+.|
T Consensus       118 ~~~v~~v~~sp~~~~l~s~~----~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d  193 (343)
T 2xzm_R          118 QSEVYSVAFSPDNRQILSAG----AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD  193 (343)
T ss_dssp             CSCEEEEEECSSTTEEEEEE----TTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEEEEc----CCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC
Confidence            45689999999988877766    579999999985543333322 3667799999965431       13689999999


Q ss_pred             ceEEeC
Q psy9278          93 GKLQIW   98 (98)
Q Consensus        93 G~L~iw   98 (98)
                      |.+.||
T Consensus       194 ~~i~iw  199 (343)
T 2xzm_R          194 GRLKVW  199 (343)
T ss_dssp             SEEEEE
T ss_pred             CEEEEE
Confidence            999998

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.47  E-value=0.00068  Score=49.04  Aligned_cols=72  Identities=11%  Similarity=0.293  Sum_probs=56.0

Q ss_pred             cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ...-.+.++.|-|....+++.+    ..|.|.||+++.++....- ..+..++.|..|-..   .+.||+|+.||.+.||
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s----~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~---~~~l~s~~~d~~v~iw  208 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSS----QDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDR---GRNVLSASLDGTIRLW  208 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETT---TTEEEEEETTSCEEEE
T ss_pred             cccCccEEEEECCCCCEEEEEe----CCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCC---CCEEEEEcCCCcEEEe
Confidence            4556789999999877666554    5789999999887643222 237788999999553   5789999999999998

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.47  E-value=0.00073  Score=48.99  Aligned_cols=70  Identities=11%  Similarity=0.230  Sum_probs=54.5

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-.++.+.|-|....+++-|    ..|.|+||++..++....-. .+...+.|..|-++   .+.||+|+.||.+.||
T Consensus        55 ~~~v~~~~~s~d~~~l~s~s----~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~~~~s~~---~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           55 LAKIYAMHWGTDSRLLLSAS----QDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPS---GNYVACGGLDNICSIY  124 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEE----TTTEEEEEETTTCCEEEEEE-CSSSCEEEEEECTT---SSEEEEEETTCEEEEE
T ss_pred             CCceEEEEECCCCCEEEEEe----CCCcEEEEECCCCCcceEee-cCCccEEEEEECCC---CCEEEEEeCCCeEEEE
Confidence            45689999999887776655    57899999998776432222 26677999999664   4799999999999998

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.47  E-value=0.00056  Score=52.91  Aligned_cols=71  Identities=18%  Similarity=0.370  Sum_probs=55.4

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-.+.+++|-|...++++.|+   ..|.|.||++..+.. +.....+...+.|..|-..   ..+||+|+-||.+.||
T Consensus       149 ~~~V~~v~~~p~~~~~las~s---~Dg~v~iwD~~~~~~-~~~~~~~~~~v~~v~wspd---g~~lasgs~dg~v~iw  219 (434)
T 2oit_A          149 GGMVIDMKWNPTVPSMVAVCL---ADGSIAVLQVTETVK-VCATLPSTVAVTSVCWSPK---GKQLAVGKQNGTVVQY  219 (434)
T ss_dssp             GGSEEEEEECSSCTTEEEEEE---TTSCEEEEEESSSEE-EEEEECGGGCEEEEEECTT---SSCEEEEETTSCEEEE
T ss_pred             CCceEEEEECCCCCCEEEEEE---CCCeEEEEEcCCCcc-eeeccCCCCceeEEEEcCC---CCEEEEEcCCCcEEEE
Confidence            456899999999666665554   479999999998843 3344456778999999544   5789999999999998

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.0012  Score=46.02  Aligned_cols=70  Identities=16%  Similarity=0.192  Sum_probs=56.3

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecC-----ce
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFE-----GK   94 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~-----G~   94 (98)
                      ....+.++.|-|....+++.+    ..|.|.||+++.++..  ..++.+..+.|..|-..   .+.|+++..+     |.
T Consensus        73 h~~~v~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~---~~~l~~~~~~~~~~~g~  143 (369)
T 3zwl_B           73 HTGTIWSIDVDCFTKYCVTGS----ADYSIKLWDVSNGQCV--ATWKSPVPVKRVEFSPC---GNYFLAILDNVMKNPGS  143 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE----TTTEEEEEETTTCCEE--EEEECSSCEEEEEECTT---SSEEEEEECCBTTBCCE
T ss_pred             cCCcEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCcEE--EEeecCCCeEEEEEccC---CCEEEEecCCccCCCCE
Confidence            456789999999887777665    4789999999888654  44448889999999654   5789999998     99


Q ss_pred             EEeC
Q psy9278          95 LQIW   98 (98)
Q Consensus        95 L~iw   98 (98)
                      +.+|
T Consensus       144 i~~~  147 (369)
T 3zwl_B          144 INIY  147 (369)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9987

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=97.44  E-value=0.00083  Score=48.63  Aligned_cols=70  Identities=11%  Similarity=0.222  Sum_probs=54.5

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ....+.++.|-|....+++-+    ..|.|+||++..++.  +..+ .+..++.|..|-..   .+.||+|+.||.+.||
T Consensus        75 h~~~V~~~~~~~~~~~l~s~s----~D~~v~lwd~~~~~~--~~~~~~h~~~v~~v~~sp~---~~~l~s~~~d~~i~~w  145 (343)
T 2xzm_R           75 HNHFVSDLALSQENCFAISSS----WDKTLRLWDLRTGTT--YKRFVGHQSEVYSVAFSPD---NRQILSAGAEREIKLW  145 (343)
T ss_dssp             CSSCEEEEEECSSTTEEEEEE----TTSEEEEEETTSSCE--EEEEECCCSCEEEEEECSS---TTEEEEEETTSCEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEc----CCCcEEEEECCCCcE--EEEEcCCCCcEEEEEECCC---CCEEEEEcCCCEEEEE
Confidence            345688999999776555444    579999999988864  3333 37889999999554   5789999999999998

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.43  E-value=0.00066  Score=50.48  Aligned_cols=64  Identities=17%  Similarity=0.389  Sum_probs=50.7

Q ss_pred             eeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          26 DCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        26 D~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      -+-|=  +..++++|.    .+.|.||+++.|++..+-+.+ +...|.|..|-..   .++||+|+.||.+.||
T Consensus       110 ~l~wS--~~n~lAvgl----d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd---g~~lasgs~Dg~v~iW  174 (420)
T 4gga_A          110 LVDWS--SGNVLAVAL----DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE---GNYLAVGTSSAEVQLW  174 (420)
T ss_dssp             CEEEC--TTSEEEEEE----TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred             eEEEC--CCCEEEEEe----CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC---CCEEEEEECCCeEEEE
Confidence            35564  446888883    578999999999877666654 5678999999543   5799999999999998

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.43  E-value=0.001  Score=48.91  Aligned_cols=71  Identities=11%  Similarity=0.096  Sum_probs=56.1

Q ss_pred             cCCcceeeeeeecCCccEEEEccccCCccc-EEEEEecCCceeEEEEec---ccCceeeeecCCCCCCCceEEEeecCce
Q psy9278          19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGS-IQMYEINDGQPELVKTVE---KPNAFKCGTFNASPLSERYLATGDFEGK   94 (98)
Q Consensus        19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~-iqIyeL~~~~l~~~~e~e---~~~~~KC~TFgaSsl~~r~lAtGdf~G~   94 (98)
                      ...-.+.++.|=|....+++-+    ..|. |+||++..++..  .+++   ++.++.|..|-..   .+.||+|+.||.
T Consensus       193 ~h~~~v~~~~~s~~g~~l~s~s----~d~~~v~iwd~~~~~~~--~~~~~g~h~~~v~~~~~s~~---~~~l~s~s~d~~  263 (355)
T 3vu4_A          193 AHTNPIKMVRLNRKSDMVATCS----QDGTIIRVFKTEDGVLV--REFRRGLDRADVVDMKWSTD---GSKLAVVSDKWT  263 (355)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEE----TTCSEEEEEETTTCCEE--EEEECTTCCSCEEEEEECTT---SCEEEEEETTCE
T ss_pred             ccCCceEEEEECCCCCEEEEEe----CCCCEEEEEECCCCcEE--EEEEcCCCCCcEEEEEECCC---CCEEEEEECCCE
Confidence            3456789999999776666554    5787 999999987643  4444   7889999999654   478999999999


Q ss_pred             EEeC
Q psy9278          95 LQIW   98 (98)
Q Consensus        95 L~iw   98 (98)
                      +.||
T Consensus       264 v~iw  267 (355)
T 3vu4_A          264 LHVF  267 (355)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.00088  Score=47.57  Aligned_cols=71  Identities=17%  Similarity=0.480  Sum_probs=50.2

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEe----cCCce----eEEEEecc-----------cCceeeeecCCCCCC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEI----NDGQP----ELVKTVEK-----------PNAFKCGTFNASPLS   82 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL----~~~~l----~~~~e~e~-----------~~~~KC~TFgaSsl~   82 (98)
                      -.+..+.|-|....+++.|.   ..|.|+||++    +.++.    ....++..           ..++.|..|-..   
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---  119 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGE---KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD---  119 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEE---TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT---
T ss_pred             CceEEEEECCCCCcEEEEec---CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC---
Confidence            36789999999884666653   5799999999    77762    22333333           448999999653   


Q ss_pred             CceEEEeecCceEEeC
Q psy9278          83 ERYLATGDFEGKLQIW   98 (98)
Q Consensus        83 ~r~lAtGdf~G~L~iw   98 (98)
                      .+.||+|+.||.+.||
T Consensus       120 ~~~l~~~~~dg~i~i~  135 (425)
T 1r5m_A          120 GNSIVTGVENGELRLW  135 (425)
T ss_dssp             SSEEEEEETTSCEEEE
T ss_pred             CCEEEEEeCCCeEEEE
Confidence            5799999999999998

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.42  E-value=0.00067  Score=49.09  Aligned_cols=76  Identities=8%  Similarity=0.122  Sum_probs=56.2

Q ss_pred             hhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCce-eEEEEecccCceeeeecCCCCCCCceEEEeecCce
Q psy9278          16 VEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP-ELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGK   94 (98)
Q Consensus        16 i~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l-~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~   94 (98)
                      +.......+..+.|-|...++++.|.   ..|.|.||++..++. ...-...+..++.|..|-    ..+.||+|+.||.
T Consensus       285 ~~~~~~~~v~~~~~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~l~s~~~d~~  357 (420)
T 3vl1_A          285 LPSKFTCSCNSLTVDGNNANYIYAGY---ENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA----AGALFVSSGFDTS  357 (420)
T ss_dssp             ECCTTSSCEEEEEECSSCTTEEEEEE---TTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE----TTEEEEEETTTEE
T ss_pred             cccccCCCceeEEEeCCCCCEEEEEe---CCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC----CCCEEEEecCCcc
Confidence            33345567899999999986777764   569999999988753 222223366788888664    2469999999999


Q ss_pred             EEeC
Q psy9278          95 LQIW   98 (98)
Q Consensus        95 L~iw   98 (98)
                      +.||
T Consensus       358 v~iw  361 (420)
T 3vl1_A          358 IKLD  361 (420)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.0013  Score=49.35  Aligned_cols=72  Identities=8%  Similarity=0.051  Sum_probs=57.3

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEec--CC-ceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN--DG-QPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~--~~-~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      ...+.++.|-|....+++.|+   ..|.|+||+++  .+ .++.+.....+..+.|..|-..   .+.||+|+.+|.+.+
T Consensus       102 ~~~v~~~~~s~d~~~l~~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~~g~v~~  175 (450)
T 2vdu_B          102 YSYIRNLRLTSDESRLIACAD---SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED---DTTVIIADKFGDVYS  175 (450)
T ss_dssp             CCCEEEEEECTTSSEEEEEEG---GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT---SSEEEEEETTSEEEE
T ss_pred             CCceEEEEEcCCCCEEEEEEC---CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC---CCEEEEEeCCCcEEE
Confidence            446899999999888767775   36899999998  55 4555555567788999999554   479999999999987


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       176 ~  176 (450)
T 2vdu_B          176 I  176 (450)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.00087  Score=50.31  Aligned_cols=71  Identities=11%  Similarity=0.041  Sum_probs=55.6

Q ss_pred             CcceeeeeeecC--CccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPC--SAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~--SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-.+.++.|-|.  ..++++.|+   ..|.|.||++..++........+..++.|..|-    ..+.||+|+.||.|.||
T Consensus       195 ~~~v~~~~~sp~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s----d~~~l~s~~~d~~v~vw  267 (450)
T 2vdu_B          195 VSMLTDVHLIKDSDGHQFIITSD---RDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG----KDYLLLSAGGDDKIFAW  267 (450)
T ss_dssp             SSCEEEEEEEECTTSCEEEEEEE---TTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC----STTEEEEEESSSEEEEE
T ss_pred             cCceEEEEEcCCCCCCcEEEEEc---CCCcEEEEECCCCceeeeeecCCCCceEEEEEC----CCCEEEEEeCCCeEEEE
Confidence            346889999998  245666664   358999999998876544334577889999996    46899999999999998

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.40  E-value=0.00072  Score=50.73  Aligned_cols=74  Identities=19%  Similarity=0.327  Sum_probs=55.4

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc-eeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ-PELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~-l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      ..-.+.++.|-|...++++.|.   ..|.|.||++..++ .+.+..+ .+..++.|..|-..  .+..||+|+.||.+.|
T Consensus       230 h~~~v~~v~~~p~~~~~l~s~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~--~~~~l~tg~~dg~v~v  304 (430)
T 2xyi_A          230 HTAVVEDVAWHLLHESLFGSVA---DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY--SEFILATGSADKTVAL  304 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEE---TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSS--CTTEEEEEETTSEEEE
T ss_pred             CCCCEeeeEEeCCCCCEEEEEe---CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCC--CCCEEEEEeCCCeEEE
Confidence            3456899999996666655553   68999999998763 2333333 47788999999554  3457999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       305 w  305 (430)
T 2xyi_A          305 W  305 (430)
T ss_dssp             E
T ss_pred             E
Confidence            8

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.00051  Score=55.22  Aligned_cols=79  Identities=13%  Similarity=0.193  Sum_probs=56.6

Q ss_pred             CCcceeeeeeecCC-c-------cEEEEccccC----------------CcccEEEEEecCCceeEE--EEec-ccCcee
Q psy9278          20 LDYQLFDCKWMPCS-A-------KFIVLGMKPK----------------GTGSIQMYEINDGQPELV--KTVE-KPNAFK   72 (98)
Q Consensus        20 l~yT~fD~kWIP~S-A-------rfV~lG~~pr----------------gtG~iqIyeL~~~~l~~~--~e~e-~~~~~K   72 (98)
                      +...|+++.|.|.. .       .++++|....                ..|.|+||+++.+++...  ..+. +...+.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            36789999999986 1       7888887553                458899999998876432  2233 346789


Q ss_pred             eeecCCCC---CCCceEEEeecCceEEeC
Q psy9278          73 CGTFNASP---LSERYLATGDFEGKLQIW   98 (98)
Q Consensus        73 C~TFgaSs---l~~r~lAtGdf~G~L~iw   98 (98)
                      +..|-...   .....||+|+.||.+.||
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlW  240 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFL  240 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEE
Confidence            99997641   123689999999999998

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.00065  Score=49.87  Aligned_cols=73  Identities=11%  Similarity=0.001  Sum_probs=54.8

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCC-CCCCceEEEeecCceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNAS-PLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaS-sl~~r~lAtGdf~G~L~iw   98 (98)
                      -.+..+.|-|....+++-+    ..|.|.||++..++....-+.....++.|..|-.. +...+.||+|+-||.+.||
T Consensus       215 ~~v~~~~~s~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw  288 (437)
T 3gre_A          215 GAVSSICIDEECCVLILGT----TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW  288 (437)
T ss_dssp             CCEEEEEECTTSCEEEEEE----TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEc----CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence            4688999999965555444    46999999999876544444466778999966533 3346799999999999998

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.35  E-value=0.00058  Score=51.19  Aligned_cols=72  Identities=15%  Similarity=0.173  Sum_probs=53.9

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-.|.+++|-|...++++.|+   ..|.|+||+++.+.++.+...+ ....+.|..|-..   .+.||+|+.||.+.||
T Consensus       164 ~~~V~~l~f~p~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~g~~dg~i~~w  236 (435)
T 4e54_B          164 GGSITGLKFNPLNTNQFYASS---MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSAS---SRMVVTGDNVGNVILL  236 (435)
T ss_dssp             SCCCCEEEECSSCTTEEEEEC---SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETT---TTEEEEECSSSBEEEE
T ss_pred             CCCEEEEEEeCCCCCEEEEEe---CCCEEEEeeccCCceeEEeccCCCCccEEEEEECCC---CCEEEEEeCCCcEeee
Confidence            456889999996555555443   5789999999988887776554 3344667777543   4789999999999998

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.00097  Score=48.10  Aligned_cols=72  Identities=11%  Similarity=0.102  Sum_probs=54.0

Q ss_pred             cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCcee-EEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPE-LVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~-~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      ..+..+..+.|-|.... ++.|.   ..|.|+||++..++.. ..-+..+..++.|..|-..   .+.||+|+ ++.+.|
T Consensus       168 ~~~~~i~~~~~~pdg~~-lasg~---~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~---g~~l~s~~-~~~v~i  239 (343)
T 3lrv_A          168 KSDVEYSSGVLHKDSLL-LALYS---PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADN---GYWMVVEC-DQTVVC  239 (343)
T ss_dssp             CSSCCCCEEEECTTSCE-EEEEC---TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTT---SSEEEEEE-SSBEEE
T ss_pred             CCCCceEEEEECCCCCE-EEEEc---CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCC---CCEEEEEe-CCeEEE
Confidence            34455788999997654 44443   6799999999988765 2223346889999999554   57899999 789999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       240 w  240 (343)
T 3lrv_A          240 F  240 (343)
T ss_dssp             E
T ss_pred             E
Confidence            8

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.33  E-value=0.0013  Score=48.45  Aligned_cols=66  Identities=11%  Similarity=0.253  Sum_probs=54.4

Q ss_pred             eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      +..+.|=|  ..+++.|    ..|.|.||+++.+++..+.+.++...+.|..|-..   .+.||+|+-||.+.||
T Consensus        96 ~~~~~~s~--~~l~~~~----~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~---~~~l~~~~~dg~i~iw  161 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVA----LERNVYVWNADSGSVSALAETDESTYVASVKWSHD---GSFLSVGLGNGLVDIY  161 (401)
T ss_dssp             CBCEEECT--TSEEEEE----ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred             EEEEeecC--CCEEEEE----CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC---CCEEEEECCCCeEEEE
Confidence            33466655  5677766    67899999999999988888888899999999653   5799999999999998

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.0015  Score=44.76  Aligned_cols=69  Identities=12%  Similarity=0.224  Sum_probs=53.1

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ....+..+.|-|.. ++++.|    ..|.|.||++..+++...-+. +..++.|..|-...    .|++|+.||.+.||
T Consensus       224 ~~~~i~~~~~~~~~-~l~~~~----~dg~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~----~~~~~~~dg~i~iw  292 (313)
T 3odt_A          224 HESFVYCIKLLPNG-DIVSCG----EDRTVRIWSKENGSLKQVITL-PAISIWSVDCMSNG----DIIVGSSDNLVRIF  292 (313)
T ss_dssp             CSSCEEEEEECTTS-CEEEEE----TTSEEEEECTTTCCEEEEEEC-SSSCEEEEEECTTS----CEEEEETTSCEEEE
T ss_pred             CCceEEEEEEecCC-CEEEEe----cCCEEEEEECCCCceeEEEec-cCceEEEEEEccCC----CEEEEeCCCcEEEE
Confidence            44678899999998 777666    579999999998875443332 45588999885543    38889999999998

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.32  E-value=0.0014  Score=51.86  Aligned_cols=72  Identities=17%  Similarity=0.310  Sum_probs=58.3

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      +.+.+..+.|-|.. ++++.|+   ..|.|+||+++.+++..+....++..+.|..|-..   .+.||+|+.||.+.+|
T Consensus       447 ~~~~v~~va~spdg-~~lasgs---~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspd---g~~las~s~d~~v~~w  518 (611)
T 1nr0_A          447 ISYNSSCVALSNDK-QFVAVGG---QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN---GAFLVATDQSRKVIPY  518 (611)
T ss_dssp             CSSCEEEEEECTTS-CEEEEEE---TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred             cCCCceEEEEeCCC-CEEEEeC---CCCeEEEEEccCCceeeeeccCCCCceEEEEECCC---CCEEEEEcCCCCEEEE
Confidence            34667778888875 4556664   47899999999998877777778999999999554   5799999999999998

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.31  E-value=0.0014  Score=47.75  Aligned_cols=70  Identities=11%  Similarity=0.281  Sum_probs=54.7

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ....+..+.|-|....+++-+    ..|.|+||+++.+++.  ..+. +...+.|..|-+.   .+.||+|+.||.+.||
T Consensus       205 h~~~v~~l~~spd~~~l~s~s----~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~sp~---~~~l~s~s~D~~v~iw  275 (321)
T 3ow8_A          205 HAMPIRSLTFSPDSQLLVTAS----DDGYIKIYDVQHANLA--GTLSGHASWVLNVAFCPD---DTHFVSSSSDKSVKVW  275 (321)
T ss_dssp             CSSCCCEEEECTTSCEEEEEC----TTSCEEEEETTTCCEE--EEECCCSSCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred             cCCceeEEEEcCCCCEEEEEc----CCCeEEEEECCCccee--EEEcCCCCceEEEEECCC---CCEEEEEeCCCcEEEE
Confidence            345688999999877666554    5789999999887653  3443 6677999999654   4789999999999998

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.0018  Score=45.91  Aligned_cols=70  Identities=11%  Similarity=0.267  Sum_probs=54.2

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ....+..+.|-|.. .+++.+    ..|.|.||+++.+++..... .+..++.|..|-..   .+.||+|+.||.+.||
T Consensus       288 ~~~~i~~~~~~~~~-~l~~~~----~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~  357 (425)
T 1r5m_A          288 HSQSIVSASWVGDD-KVISCS----MDGSVRLWSLKQNTLLALSI-VDGVPIFAGRISQD---GQKYAVAFMDGQVNVY  357 (425)
T ss_dssp             CSSCEEEEEEETTT-EEEEEE----TTSEEEEEETTTTEEEEEEE-CTTCCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred             CCccEEEEEECCCC-EEEEEe----CCCcEEEEECCCCcEeEecc-cCCccEEEEEEcCC---CCEEEEEECCCeEEEE
Confidence            45678899999998 666555    57899999998876443332 25678899988554   5799999999999998

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.28  E-value=0.0016  Score=47.85  Aligned_cols=72  Identities=11%  Similarity=0.304  Sum_probs=54.3

Q ss_pred             hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278          18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQ   96 (98)
Q Consensus        18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~   96 (98)
                      +...+.+..+.|-|... +++.|.   ..|.|+||++..++..  ..+ .+...+-|..|-+.   .+.||+|+.||.+.
T Consensus       281 ~~~~~~~~~~~~s~~g~-~l~~g~---~d~~i~vwd~~~~~~~--~~l~~h~~~v~~l~~spd---g~~l~sgs~D~~v~  351 (354)
T 2pbi_B          281 ESIIFGASSVDFSLSGR-LLFAGY---NDYTINVWDVLKGSRV--SILFGHENRVSTLRVSPD---GTAFCSGSWDHTLR  351 (354)
T ss_dssp             TTCCSCEEEEEECTTSS-EEEEEE---TTSCEEEEETTTCSEE--EEECCCSSCEEEEEECTT---SSCEEEEETTSEEE
T ss_pred             CCcccceeEEEEeCCCC-EEEEEE---CCCcEEEEECCCCceE--EEEECCCCcEEEEEECCC---CCEEEEEcCCCCEE
Confidence            34456778888988765 555553   5789999999877632  333 37788999999544   47899999999999


Q ss_pred             eC
Q psy9278          97 IW   98 (98)
Q Consensus        97 iw   98 (98)
                      ||
T Consensus       352 vW  353 (354)
T 2pbi_B          352 VW  353 (354)
T ss_dssp             EE
T ss_pred             ec
Confidence            98

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.28  E-value=0.0017  Score=47.99  Aligned_cols=68  Identities=10%  Similarity=0.318  Sum_probs=54.0

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ....++++.|-|....+++.+    ..|.|+||++..++.  +.+++ +..++.|..|.     .+.|++|+.||.+.+|
T Consensus       309 ~~~~v~~~~~~~~~~~l~sg~----~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~-----~~~l~s~s~dg~v~vw  377 (464)
T 3v7d_B          309 HTDRIYSTIYDHERKRCISAS----MDTTIRIWDLENGEL--MYTLQGHTALVGLLRLS-----DKFLVSAAADGSIRGW  377 (464)
T ss_dssp             CSSCEEEEEEETTTTEEEEEE----TTSCEEEEETTTTEE--EEEECCCSSCEEEEEEC-----SSEEEEEETTSEEEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEe----CCCcEEEEECCCCcE--EEEEeCCCCcEEEEEEc-----CCEEEEEeCCCcEEEE
Confidence            356688999999877766655    578999999988764  34443 77888998884     4689999999999998

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.27  E-value=0.00078  Score=50.51  Aligned_cols=70  Identities=13%  Similarity=0.280  Sum_probs=54.0

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-.+..+.|-|....+++-|    ..|.|.||+++.+++...-+ .+..++.|..|-.+   .+.||+|+.||.+.||
T Consensus       108 ~~~V~~~~~~p~~~~l~s~s----~Dg~i~vwd~~~~~~~~~l~-~h~~~V~~v~~~~~---~~~l~sgs~D~~i~iw  177 (410)
T 1vyh_C          108 RSPVTRVIFHPVFSVMVSAS----EDATIKVWDYETGDFERTLK-GHTDSVQDISFDHS---GKLLASCSADMTIKLW  177 (410)
T ss_dssp             SSCEEEEEECSSSSEEEEEE----SSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTT---SSEEEEEETTSCCCEE
T ss_pred             CCcEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCcEEEEEe-ccCCcEEEEEEcCC---CCEEEEEeCCCeEEEE
Confidence            34577888888776666555    57999999999887643322 26778999999654   4689999999999998

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.0013  Score=53.74  Aligned_cols=75  Identities=15%  Similarity=0.284  Sum_probs=60.4

Q ss_pred             cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      ..+-.+.++.|-|....+++.|    ..|.|.||+++.++.+.+...+ +..++.|..|-... ..+.||+|+.||.+.|
T Consensus         7 gH~~~V~~l~~s~dg~~latg~----~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCS----SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVLI   81 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEE----TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-SCSEEEEEETTSCEEE
T ss_pred             cCcceeEEEEECCCCCeEEEEE----CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-CCCEEEEEeCCCeEEE
Confidence            3455788999999887776665    4799999999988888888776 78899999995442 1468999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus        82 w   82 (753)
T 3jro_A           82 W   82 (753)
T ss_dssp             E
T ss_pred             E
Confidence            8

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.26  E-value=0.00092  Score=49.33  Aligned_cols=71  Identities=11%  Similarity=0.188  Sum_probs=55.2

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..-.++++.|-|....++.-+    ..|.|.||++..++....-+ .+...+.|+.|-.+   .+.||+|+.||.+.||
T Consensus        65 H~~~V~~~~~sp~~~~l~s~s----~D~~v~iWd~~~~~~~~~~~-~h~~~v~~~~~s~~---g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           65 HSGKVYSLDWTPEKNWIVSAS----QDGRLIVWNALTSQKTHAIK-LHCPWVMECAFAPN---GQSVACGGLDSACSIF  135 (380)
T ss_dssp             CSSCEEEEEECTTSSCEEEEE----TTSEEEEEETTTTEEEEEEE-CCCTTCCCCEECTT---SSEEEECCSSSCCEEE
T ss_pred             cccEEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCccceEEe-cCCCCEEEEEECCC---CCEEEEeeCCCcEEEE
Confidence            456789999999887776655    57999999998876543332 25667888888554   4789999999999998

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.24  E-value=0.0022  Score=47.67  Aligned_cols=70  Identities=13%  Similarity=0.209  Sum_probs=55.2

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..+..+.|.|....+|+.+..  ..|.|.||++..++  ++.+++ +...+.|..|-..   .+.||||+-||.|.||
T Consensus       321 ~~v~~~~~~~~~~~lv~~sg~--~d~~I~iwd~~~~~--~v~~l~gH~~~V~~l~~spd---g~~l~S~s~D~tvriW  391 (420)
T 4gga_A          321 SQVCSILWSPHYKELISGHGF--AQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPD---GATVASAAADETLRLW  391 (420)
T ss_dssp             SCEEEEEEETTTTEEEEEECT--TTCCEEEEETTTCC--EEEEECCCSSCEEEEEECTT---SSCEEEEETTTEEEEE
T ss_pred             cceeeeeecCCCCeEEEEEec--CCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCC---CCEEEEEecCCeEEEE
Confidence            456778899999888876432  35789999997764  566666 7889999999543   4689999999999999

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.23  E-value=0.0013  Score=49.60  Aligned_cols=73  Identities=14%  Similarity=0.239  Sum_probs=56.7

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec--ccCceeeeecCCCC-------CCCceEEEee
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE--KPNAFKCGTFNASP-------LSERYLATGD   90 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e--~~~~~KC~TFgaSs-------l~~r~lAtGd   90 (98)
                      ....+..+.|-|....+++.+    ..|.|.||+++.+++.  .+.+  +..++.|..|-+..       ...+.||+|+
T Consensus       487 ~~~~v~~~~~s~~g~~l~~~~----~dg~i~iw~~~~~~~~--~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~  560 (615)
T 1pgu_A          487 LRAKPSYISISPSETYIAAGD----VMGKILLYDLQSREVK--TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS  560 (615)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTTEEE--ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE
T ss_pred             ccCceEEEEECCCCCEEEEcC----CCCeEEEeeCCCCcce--eEeecCCCCceeEEEEcCccccccccccCCCEEEEEc
Confidence            445678899999887666655    4799999999988664  3444  78899999996611       1468999999


Q ss_pred             cCceEEeC
Q psy9278          91 FEGKLQIW   98 (98)
Q Consensus        91 f~G~L~iw   98 (98)
                      -||.+.||
T Consensus       561 ~dg~i~iw  568 (615)
T 1pgu_A          561 LDTNIFIY  568 (615)
T ss_dssp             TTSCEEEE
T ss_pred             CCCcEEEE
Confidence            99999998

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.23  E-value=0.0016  Score=48.10  Aligned_cols=72  Identities=15%  Similarity=0.362  Sum_probs=55.2

Q ss_pred             cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      ...-.+.+++|.|.. .+++.+    ..|.|.||+++.++.  +...+ +..++.|..|-.+. ....||+|+.||.+.+
T Consensus       160 ~h~~~V~~l~~~~~~-~l~s~s----~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~-~~~~l~s~s~d~~i~v  231 (464)
T 3v7d_B          160 GHDGGVWALKYAHGG-ILVSGS----TDRTVRVWDIKKGCC--THVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHV  231 (464)
T ss_dssp             CCSSCEEEEEECSTT-EEEEEE----TTSCEEEEETTTTEE--EEEECCCSSCEEEEEEEESS-SCEEEEEEETTSCEEE
T ss_pred             CCCcCEEEEEEcCCC-EEEEEe----CCCCEEEEECCCCcE--EEEECCCCCccEEEEEecCC-CCCEEEEEcCCCcEEE
Confidence            345678999999988 444444    579999999998863  44444 78899999986432 3468999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       232 w  232 (464)
T 3v7d_B          232 W  232 (464)
T ss_dssp             E
T ss_pred             e
Confidence            8

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.22  E-value=0.0015  Score=49.18  Aligned_cols=69  Identities=13%  Similarity=0.191  Sum_probs=53.6

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe---cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV---EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~---e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+..+.|-|...++++.|.   ..|.|.||++..++....-..   .+..++.|..|-    ..+.|++|+.||.+.+|
T Consensus       208 ~v~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~l~~~~~d~~i~~w  279 (615)
T 1pgu_A          208 FVRDVEFSPDSGEFVITVG---SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL----DSQKFATVGADATIRVW  279 (615)
T ss_dssp             CEEEEEECSTTCCEEEEEE---TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES----SSSEEEEEETTSEEEEE
T ss_pred             eEEEEEECCCCCCEEEEEe---CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc----CCCEEEEEcCCCcEEEE
Confidence            6889999999445555543   378999999988865433322   678899999996    46799999999999998

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.00093  Score=56.71  Aligned_cols=66  Identities=21%  Similarity=0.449  Sum_probs=54.0

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccC-----ceeeeecCCCCCCCceEEEeecCceEE
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPN-----AFKCGTFNASPLSERYLATGDFEGKLQ   96 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~-----~~KC~TFgaSsl~~r~lAtGdf~G~L~   96 (98)
                      -.+.+|+|=|...++++.+    ..|.+.||+.+.    ++...++..     ++.|..|-+   ..+.||+|+.||.+.
T Consensus        86 ~~V~~vawSPdG~~LAs~s----~dg~V~iwd~~~----~l~~l~~~~~~~~~sv~svafSP---DG~~LAsgs~DGtVk  154 (588)
T 2j04_A           86 CYPRVCKPSPIDDWMAVLS----NNGNVSVFKDNK----MLTNLDSKGNLSSRTYHCFEWNP---IESSIVVGNEDGELQ  154 (588)
T ss_dssp             CCEEEEEECSSSSCEEEEE----TTSCEEEEETTE----EEEECCCSSCSTTTCEEEEEECS---SSSCEEEEETTSEEE
T ss_pred             CcEEEEEECCCCCEEEEEe----CCCcEEEEeCCc----eeeeccCCCccccccEEEEEEcC---CCCEEEEEcCCCEEE
Confidence            4599999999999999888    899999999544    555555222     599999944   468999999999999


Q ss_pred             eC
Q psy9278          97 IW   98 (98)
Q Consensus        97 iw   98 (98)
                      ||
T Consensus       155 IW  156 (588)
T 2j04_A          155 FF  156 (588)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.19  E-value=0.0016  Score=48.05  Aligned_cols=71  Identities=20%  Similarity=0.357  Sum_probs=53.3

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEeccc------CceeeeecCCCCCCCceEEEeecCce
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKP------NAFKCGTFNASPLSERYLATGDFEGK   94 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~------~~~KC~TFgaSsl~~r~lAtGdf~G~   94 (98)
                      ...+..+.|-|....|++-+    ..|.|+||++..++...+...+..      ..+.|..|-.+   .+.||+|+-||.
T Consensus       249 ~~~v~~v~~~p~~~~l~s~s----~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~dg~  321 (380)
T 3iz6_a          249 EGDINSVKFFPDGQRFGTGS----DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS---GRLLFAGYSNGD  321 (380)
T ss_dssp             SSCCCEEEECTTSSEEEEEC----SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS---SSEEEEECTTSC
T ss_pred             CCCeEEEEEecCCCeEEEEc----CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCC---CCEEEEEECCCC
Confidence            45688999999988777665    679999999998865444333221      13677777544   579999999999


Q ss_pred             EEeC
Q psy9278          95 LQIW   98 (98)
Q Consensus        95 L~iw   98 (98)
                      +.||
T Consensus       322 i~vw  325 (380)
T 3iz6_a          322 CYVW  325 (380)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.19  E-value=0.0023  Score=47.41  Aligned_cols=67  Identities=12%  Similarity=0.195  Sum_probs=52.9

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+.++.|-|....+++-+    ..|.|+||+++.+++.  ..++ +...+.|..|-..   .+.||+|+.||.+.||
T Consensus       125 ~v~~v~~s~dg~~l~s~~----~d~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~p~---~~~l~s~s~d~~v~iw  192 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGA----EDRLIRIWDIENRKIV--MILQGHEQDIYSLDYFPS---GDKLVSGSGDRTVRIW  192 (393)
T ss_dssp             BEEEEEECTTSSEEEEEE----TTSCEEEEETTTTEEE--EEECCCSSCEEEEEECTT---SSEEEEEETTSEEEEE
T ss_pred             eEEEEEECCCCCEEEEEc----CCCeEEEEECCCCcEE--EEEccCCCCEEEEEEcCC---CCEEEEecCCCcEEEE
Confidence            478999999877666544    4789999999888643  3333 7778999999654   4689999999999998

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.18  E-value=0.0015  Score=49.36  Aligned_cols=69  Identities=7%  Similarity=0.208  Sum_probs=52.9

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-.+..+.|-|....+++.|    ..|.|+||++++..+..+  ..+..++.|..|-+.   .+.||||+-||.+.||
T Consensus       508 ~~~v~~l~~s~dg~~l~s~~----~dg~v~lwd~~~~~~~~~--~~h~~~v~~~~fs~d---g~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          508 SSSVRGVAFSPDGQTIASAS----DDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSPD---GQTIASASSDKTVKLW  576 (577)
T ss_dssp             SSCEEEEEECTTSSCEEEEE----TTSEEEEECTTSCEEEEE--ECCSSCEEEEEECTT---SSCEEEEETTSCEEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEE----CcCEEEEEeCCCCEEEEE--cCCCCCEEEEEEcCC---CCEEEEEeCCCEEEEe
Confidence            35678899999887766655    468999999865433332  237889999999543   5789999999999999

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.0012  Score=53.04  Aligned_cols=69  Identities=17%  Similarity=0.246  Sum_probs=50.3

Q ss_pred             ceeeeeeecCC-----ccEEEEccccCCcccEEEEEecCCcee---------EEEEec-ccCceeeeecCCCCCCCceEE
Q psy9278          23 QLFDCKWMPCS-----AKFIVLGMKPKGTGSIQMYEINDGQPE---------LVKTVE-KPNAFKCGTFNASPLSERYLA   87 (98)
Q Consensus        23 T~fD~kWIP~S-----ArfV~lG~~prgtG~iqIyeL~~~~l~---------~~~e~e-~~~~~KC~TFgaSsl~~r~lA   87 (98)
                      .+.+++|.|..     .++++.|+   ..|.|+||+++.++..         ....++ +..++.|..|-..    ..||
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s---~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~----~~la  281 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVS---QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP----TTVV  281 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEE---TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS----SEEE
T ss_pred             cEEEEEECCCCCCCCCCceEEEEe---cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC----CeEE
Confidence            47899999972     35666554   4789999999877532         011222 5578999999532    3799


Q ss_pred             EeecCceEEeC
Q psy9278          88 TGDFEGKLQIW   98 (98)
Q Consensus        88 tGdf~G~L~iw   98 (98)
                      +|+.||.+.||
T Consensus       282 sgs~DgtV~lW  292 (524)
T 2j04_B          282 CGFKNGFVAEF  292 (524)
T ss_dssp             EEETTSEEEEE
T ss_pred             EEeCCCEEEEE
Confidence            99999999998

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=97.16  E-value=0.0023  Score=50.93  Aligned_cols=74  Identities=12%  Similarity=0.236  Sum_probs=57.8

Q ss_pred             cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCce---eEEEEe-cccCceeeeecCCCCCCCceEEEeecCce
Q psy9278          19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP---ELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGK   94 (98)
Q Consensus        19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l---~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~   94 (98)
                      ..+-.|..+.|-|..+++++.|+   ..|.|+||+++.++.   ...... .+...+.|..|-..   .+.||+|+.||.
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s---~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~---g~~l~sgs~Dg~  453 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSAS---RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD---GQFALSGSWDGE  453 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEE---TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT---SSEEEEEETTSE
T ss_pred             cCCceeEEEEecCCCCCEEEEEe---CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC---CCEEEEEeCCCc
Confidence            34567889999999888888775   468999999987542   223333 48889999999554   579999999999


Q ss_pred             EEeC
Q psy9278          95 LQIW   98 (98)
Q Consensus        95 L~iw   98 (98)
                      +.||
T Consensus       454 v~vw  457 (694)
T 3dm0_A          454 LRLW  457 (694)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.14  E-value=0.0023  Score=50.52  Aligned_cols=70  Identities=16%  Similarity=0.297  Sum_probs=56.1

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+-.+..+.|-|....+++.|.    .|.|.||+++.++..  ...+ ++..+.|..|-..   .+.||+|+-||.+.||
T Consensus        54 ~~~~v~~~~~s~~~~~l~~~~~----dg~i~vw~~~~~~~~--~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vw  124 (814)
T 3mkq_A           54 TETPVRAGKFIARKNWIIVGSD----DFRIRVFNYNTGEKV--VDFEAHPDYIRSIAVHPT---KPYVLSGSDDLTVKLW  124 (814)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEET----TSEEEEEETTTCCEE--EEEECCSSCEEEEEECSS---SSEEEEEETTSEEEEE
T ss_pred             CCCcEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCcEE--EEEecCCCCEEEEEEeCC---CCEEEEEcCCCEEEEE
Confidence            3456889999999887777663    799999999888643  3333 7788999999654   4689999999999998

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.13  E-value=0.0022  Score=46.54  Aligned_cols=72  Identities=4%  Similarity=0.112  Sum_probs=51.9

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCc---------eeEEEEec-cc------------CceeeeecCCC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ---------PELVKTVE-KP------------NAFKCGTFNAS   79 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~---------l~~~~e~e-~~------------~~~KC~TFgaS   79 (98)
                      -.+..+.|=|....+++-|    ..|.|.||+++.++         .+++.+++ +.            .++.|..|-..
T Consensus        29 ~~V~~v~~s~~g~~la~g~----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           29 DIISTVEFNHSGELLATGD----KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             GSEEEEEECSSSSEEEEEE----TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             CcEEEEEECCCCCEEEEEc----CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            4688999999766655544    47999999998765         33455554 33            67899998654


Q ss_pred             CCCCceEEEeecCceEEeC
Q psy9278          80 PLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        80 sl~~r~lAtGdf~G~L~iw   98 (98)
                      . ....|++|+.||.+.||
T Consensus       105 ~-~~~~l~s~s~d~~i~iw  122 (447)
T 3dw8_B          105 K-NAAQFLLSTNDKTIKLW  122 (447)
T ss_dssp             C-SSSEEEEEECSSCEEEE
T ss_pred             C-CcceEEEeCCCCeEEEE
Confidence            2 12689999999999998

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.13  E-value=0.0022  Score=48.02  Aligned_cols=69  Identities=12%  Similarity=0.290  Sum_probs=54.0

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      +..+.++.|-|....+++.|    ..|.|.||++..++..  ..+ .+...+.|..|...   ...||+|+-||.+.||
T Consensus       338 ~~~v~~v~~~~~g~~l~s~s----~D~~i~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~---~~~l~sgs~D~~i~vW  407 (410)
T 1vyh_C          338 DNWVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKRCM--KTLNAHEHFVTSLDFHKT---APYVVTGSVDQTVKVW  407 (410)
T ss_dssp             SSCEEEEEECSSSSCEEEEE----TTTEEEEECCTTSCCC--EEEECCSSCEEEEEECSS---SSCEEEEETTSEEEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCceE--EEEcCCCCcEEEEEEcCC---CCEEEEEeCCCcEEEE
Confidence            45678899999877777655    5799999999877643  233 36778999999665   3589999999999998

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.12  E-value=0.0026  Score=52.02  Aligned_cols=75  Identities=8%  Similarity=0.181  Sum_probs=58.4

Q ss_pred             CCcceeeeeeecCC-ccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          20 LDYQLFDCKWMPCS-AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        20 l~yT~fD~kWIP~S-ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      ..-.+.++.|-|.. .++++.|+   ..|.|.||+++.++...+.... +..++.|..|-... ..+.||+|+.||.+.|
T Consensus        52 h~~~V~~l~~s~~~~~~~l~s~s---~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~~l~sgs~dg~I~v  127 (753)
T 3jro_A           52 HEGPVWRVDWAHPKFGTILASCS---YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-YGPLLLVASSDGKVSV  127 (753)
T ss_dssp             CSSCEEEEEECCTTSCSEEEEEE---TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSEEEE
T ss_pred             CcCceEEEEecCCCCCCEEEEEe---CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCC-CCCEEEEEeCCCcEEE
Confidence            35678999999873 44555543   4799999999999877777665 88899999995441 1468999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       128 w  128 (753)
T 3jro_A          128 V  128 (753)
T ss_dssp             E
T ss_pred             E
Confidence            8

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.11  E-value=0.0025  Score=46.25  Aligned_cols=73  Identities=22%  Similarity=0.449  Sum_probs=54.0

Q ss_pred             cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCce-----eEEEEeccc----------CceeeeecCCCCCCC
Q psy9278          19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP-----ELVKTVEKP----------NAFKCGTFNASPLSE   83 (98)
Q Consensus        19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l-----~~~~e~e~~----------~~~KC~TFgaSsl~~   83 (98)
                      .....+..+.|-|...++++.|.   ..|.|.||++..+++     ..+..-+.+          .++.|..|-..   .
T Consensus       224 ~~~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g  297 (447)
T 3dw8_B          224 ELTEVITAAEFHPNSCNTFVYSS---SKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS---G  297 (447)
T ss_dssp             GCCCCEEEEEECSSCTTEEEEEE---TTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT---S
T ss_pred             ccCcceEEEEECCCCCcEEEEEe---CCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCC---C
Confidence            34567899999999866666664   478999999998875     333322211          38999999653   5


Q ss_pred             ceEEEeecCceEEeC
Q psy9278          84 RYLATGDFEGKLQIW   98 (98)
Q Consensus        84 r~lAtGdf~G~L~iw   98 (98)
                      +.||+|+. |.+.||
T Consensus       298 ~~l~~~~~-~~v~iw  311 (447)
T 3dw8_B          298 RYMMTRDY-LSVKVW  311 (447)
T ss_dssp             SEEEEEES-SEEEEE
T ss_pred             CEEEEeeC-CeEEEE
Confidence            78999999 999998

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.07  E-value=0.0022  Score=50.66  Aligned_cols=71  Identities=20%  Similarity=0.325  Sum_probs=55.4

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe------cccCceeeeecCCCCCCCceEEEeecCce
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV------EKPNAFKCGTFNASPLSERYLATGDFEGK   94 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~------e~~~~~KC~TFgaSsl~~r~lAtGdf~G~   94 (98)
                      .-.++.+.|-|....+++.|    ..|.|+||++..++....-+.      .+..++.|..|-..   .+.||+|+.||.
T Consensus       190 ~~~V~~v~fspdg~~las~s----~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~~l~s~s~D~~  262 (611)
T 1nr0_A          190 TKFVHSVRYNPDGSLFASTG----GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD---GTKIASASADKT  262 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT---SSEEEEEETTSE
T ss_pred             cCceEEEEECCCCCEEEEEE----CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC---CCEEEEEeCCCe
Confidence            45688999999887777665    689999999988765332211      46778999999553   478999999999


Q ss_pred             EEeC
Q psy9278          95 LQIW   98 (98)
Q Consensus        95 L~iw   98 (98)
                      +.||
T Consensus       263 v~lW  266 (611)
T 1nr0_A          263 IKIW  266 (611)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.06  E-value=0.0024  Score=48.28  Aligned_cols=68  Identities=9%  Similarity=0.223  Sum_probs=52.0

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      +-.+..+.|=|....+++-|    ..|.|.||++++..+   +.++ +..++.|..|-+.   .+.||+|+-||.+.||
T Consensus        16 ~~~V~~~a~spdg~~las~~----~d~~v~iWd~~~~~~---~~l~gh~~~V~~l~fspd---g~~las~~~d~~i~vW   84 (577)
T 2ymu_A           16 SSSVRGVAFSPDGQTIASAS----DDKTVKLWNRNGQLL---QTLTGHSSSVWGVAFSPD---GQTIASASDDKTVKLW   84 (577)
T ss_dssp             SSCEEEEEECTTSSCEEEEE----TTSEEEEECTTSCEE---EEEECCSSCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEe----CCCEEEEEECCCCEE---EEEeCCCCCEEEEEECCC---CCEEEEEeCCCEEEEE
Confidence            45688899999776655544    468899999765433   3343 7889999999543   5789999999999998

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=97.04  E-value=0.0029  Score=50.35  Aligned_cols=71  Identities=10%  Similarity=0.164  Sum_probs=55.1

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..-.+.++.|-|....+++-|    ..|.|+||++..++....- ..+...+.|..|-..   .+.||+|+.||.+.||
T Consensus       429 h~~~v~~v~~s~~g~~l~sgs----~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~---~~~l~s~s~D~~i~iw  499 (694)
T 3dm0_A          429 HSHFVEDVVLSSDGQFALSGS----WDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLD---NRQIVSASRDRTIKLW  499 (694)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTT---SSCEEEEETTSCEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEe----CCCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCC---CCEEEEEeCCCEEEEE
Confidence            345688999999876666554    5799999999887543221 247888999999554   5789999999999998

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.99  E-value=0.002  Score=50.82  Aligned_cols=71  Identities=8%  Similarity=0.195  Sum_probs=54.8

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..-.+..+.|=|....+++.+    ..|.|.||+++.++....-+ .++.++.|..|-..   .+.||+|+-||.+.||
T Consensus        12 h~~~v~~i~~sp~~~~la~~~----~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A           12 RSDRVKGIDFHPTEPWVLTTL----YSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIAR---KNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             ECSCEEEEEECSSSSEEEEEE----TTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGG---GTEEEEEETTSEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEe----CCCEEEEEECCCCceEEEEe-cCCCcEEEEEEeCC---CCEEEEEeCCCeEEEE
Confidence            345688999999876655554    47999999998876433222 37889999999664   4689999999999998

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=96.95  E-value=0.0033  Score=46.83  Aligned_cols=74  Identities=14%  Similarity=0.169  Sum_probs=54.7

Q ss_pred             cCCcceeeeeeecC-------CccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeec
Q psy9278          19 SLDYQLFDCKWMPC-------SAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDF   91 (98)
Q Consensus        19 sl~yT~fD~kWIP~-------SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf   91 (98)
                      .....|.++.|-|.       ..++++-|+   ..+.++||++..+... ..-..+..++.|..|-..  ..+.||+|+.
T Consensus       134 gH~~~v~~v~~~p~~~~~~~~d~~~las~s---~D~tv~~Wd~~~~~~~-~~~~~~~~~v~~v~~~p~--~~~~l~~~~~  207 (393)
T 4gq1_A          134 GHHNFVNDIDIADVYSADNRLAEQVIASVG---DDCTLIIWRLTDEGPI-LAGYPLSSPGISVQFRPS--NPNQLIVGER  207 (393)
T ss_dssp             SCSSCEEEEEEEEEECTTCSEEEEEEEEEE---TTSEEEEEEEETTEEE-EEEEECSSCEEEEEEETT--EEEEEEEEET
T ss_pred             CCCCceEEEEEccccccccCCCCCEEEEEE---CCCeEEEEECCCCcee-eeecCCCCCcEEEEECCC--CCceEEecCC
Confidence            44567999999984       345666654   4789999999776532 333456778899999443  3568999999


Q ss_pred             CceEEeC
Q psy9278          92 EGKLQIW   98 (98)
Q Consensus        92 ~G~L~iw   98 (98)
                      ||.+.||
T Consensus       208 d~~v~~w  214 (393)
T 4gq1_A          208 NGNIRIF  214 (393)
T ss_dssp             TSEEEEE
T ss_pred             CCEEEEE
Confidence            9999998

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.86  E-value=0.0021  Score=49.73  Aligned_cols=77  Identities=9%  Similarity=0.076  Sum_probs=56.0

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCC-----c----eeEEEEe-cccCceeeeecCCCCCCCceEEEe
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDG-----Q----PELVKTV-EKPNAFKCGTFNASPLSERYLATG   89 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~-----~----l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtG   89 (98)
                      +...+.++.|=|....+++........|.|+||+++.+     +    +..+... .+...+.|..|-..  ....||+|
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~--~~~~las~  168 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT--VPSMVAVC  168 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS--CTTEEEEE
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC--CCCEEEEE
Confidence            45569999999998777764333457899999999754     1    1122322 25778999999654  25689999


Q ss_pred             ecCceEEeC
Q psy9278          90 DFEGKLQIW   98 (98)
Q Consensus        90 df~G~L~iw   98 (98)
                      +-||.+.||
T Consensus       169 s~Dg~v~iw  177 (434)
T 2oit_A          169 LADGSIAVL  177 (434)
T ss_dssp             ETTSCEEEE
T ss_pred             ECCCeEEEE
Confidence            999999998

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.81  E-value=0.005  Score=51.53  Aligned_cols=70  Identities=16%  Similarity=0.415  Sum_probs=55.6

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..-.++.+.|-|....+++.|    ..|.|.||++..++..  ..+ .+..++.|..|-..   .+.||+|+-||.+.||
T Consensus       614 h~~~v~~~~~s~~~~~l~s~~----~d~~i~vw~~~~~~~~--~~~~~h~~~v~~~~~s~~---~~~l~s~~~d~~v~vw  684 (1249)
T 3sfz_A          614 HTDAVYHACFSQDGQRIASCG----ADKTLQVFKAETGEKL--LDIKAHEDEVLCCAFSSD---DSYIATCSADKKVKIW  684 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEE--EEECCCSSCEEEEEECTT---SSEEEEEETTSEEEEE
T ss_pred             ccccEEEEEECCCCCEEEEEe----CCCeEEEEECCCCCEE--EEeccCCCCEEEEEEecC---CCEEEEEeCCCeEEEE
Confidence            345688999999877666555    6789999999888643  333 37889999999554   4799999999999998

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.74  E-value=0.0074  Score=44.87  Aligned_cols=63  Identities=19%  Similarity=0.609  Sum_probs=38.4

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+..+.|   +.++++.|.   ..|.|.||+++.++.  +.+++ +..++.|..|     ..+.||+|+.||.+.||
T Consensus       298 ~v~~~~~---~~~~l~~g~---~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~-----~~~~l~sg~~dg~i~vw  361 (435)
T 1p22_A          298 GIACLQY---RDRLVVSGS---SDNTIRLWDIECGAC--LRVLEGHEELVRCIRF-----DNKRIVSGAYDGKIKVW  361 (435)
T ss_dssp             CEEEEEE---ETTEEEEEE---TTSCEEEEETTTCCE--EEEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEE
T ss_pred             cEEEEEe---CCCEEEEEe---CCCeEEEEECCCCCE--EEEEeCCcCcEEEEEe-----cCCEEEEEeCCCcEEEE
Confidence            3444444   334555553   467777777776643  33333 5667777777     24567888888877776

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.68  E-value=0.011  Score=41.03  Aligned_cols=68  Identities=18%  Similarity=0.315  Sum_probs=52.1

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .-.+..+.|-|....|++-|    ..|.|.||+++.++  .+...+....+.+..|-.    ++++++|.-||.+.||
T Consensus       215 ~~~v~~~~~s~~~~~l~s~s----~Dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~----~~~~~~~~~d~~i~iw  282 (340)
T 4aow_A          215 TGYLNTVTVSPDGSLCASGG----KDGQAMLWDLNEGK--HLYTLDGGDIINALCFSP----NRYWLCAATGPSIKIW  282 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEE----TTCEEEEEETTTTE--EEEEEECSSCEEEEEECS----SSSEEEEEETTEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEe----CCCeEEEEEeccCc--eeeeecCCceEEeeecCC----CCceeeccCCCEEEEE
Confidence            34678889999876666554    47899999998764  556677778899988844    4567788889999987

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.62  E-value=0.01  Score=44.13  Aligned_cols=57  Identities=21%  Similarity=0.464  Sum_probs=43.3

Q ss_pred             CccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          33 SAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        33 SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..+.++.|.   ..|.|+||+++.++....-. .+..++.|..|     ..+.||+|+.||.+.||
T Consensus       142 d~~~l~~g~---~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~-----~~~~l~sg~~dg~i~vw  198 (435)
T 1p22_A          142 DDQKIVSGL---RDNTIKIWDKNTLECKRILT-GHTGSVLCLQY-----DERVIITGSSDSTVRVW  198 (435)
T ss_dssp             CSSEEEEEE---SSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC-----CSSEEEEEETTSCEEEE
T ss_pred             CCCEEEEEe---CCCeEEEEeCCCCeEEEEEc-CCCCcEEEEEE-----CCCEEEEEcCCCeEEEE
Confidence            445566663   57999999998876543322 37789999999     35689999999999998

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.62  E-value=0.017  Score=39.97  Aligned_cols=72  Identities=14%  Similarity=0.158  Sum_probs=53.4

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEec--CCceeEEEEecccCceeeeecCCCCCCCceEEEeec-CceEEe
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN--DGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDF-EGKLQI   97 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~--~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf-~G~L~i   97 (98)
                      ...+..+.|-|...++++.+..   .|.|.+|+++  .++++.+.++..+....+..|-..   .+.|++++. +|.+.+
T Consensus        37 ~~~~~~~~~spdg~~l~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---g~~l~~~~~~~~~i~~  110 (343)
T 1ri6_A           37 PGQVQPMVVSPDKRYLYVGVRP---EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ---GQFVFVGSYNAGNVSV  110 (343)
T ss_dssp             SSCCCCEEECTTSSEEEEEETT---TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTT---SSEEEEEETTTTEEEE
T ss_pred             CCCCceEEECCCCCEEEEeecC---CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCC---CCEEEEEecCCCeEEE
Confidence            4467889999988777776642   4899999998  788988888876666777777443   355666555 788888


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       111 ~  111 (343)
T 1ri6_A          111 T  111 (343)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.009  Score=50.64  Aligned_cols=68  Identities=12%  Similarity=0.248  Sum_probs=53.3

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ...+..+.|.| ...+++.+    ..|.|+||+++.+++  +..++.+..+.|..|-..   .+.||+|+-||.+.+|
T Consensus        58 ~~~V~~l~fsp-g~~L~S~s----~D~~v~lWd~~~~~~--~~~~~~~~~V~~v~~sp~---g~~l~sgs~dg~V~lw  125 (902)
T 2oaj_A           58 RSAIKEMRFVK-GIYLVVIN----AKDTVYVLSLYSQKV--LTTVFVPGKITSIDTDAS---LDWMLIGLQNGSMIVY  125 (902)
T ss_dssp             CCCEEEEEEET-TTEEEEEE----TTCEEEEEETTTCSE--EEEEECSSCEEEEECCTT---CSEEEEEETTSCEEEE
T ss_pred             CCCEEEEEEcC-CCEEEEEE----CcCeEEEEECCCCcE--EEEEcCCCCEEEEEECCC---CCEEEEEcCCCcEEEE
Confidence            45789999999 33455444    579999999988764  444557788999999654   4789999999999998

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.39  E-value=0.028  Score=38.85  Aligned_cols=71  Identities=8%  Similarity=0.086  Sum_probs=52.6

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEec--CCceeEEEEecccCceeeeecCCCCCCCceEEEee-cCceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN--DGQPELVKTVEKPNAFKCGTFNASPLSERYLATGD-FEGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~--~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGd-f~G~L~iw   98 (98)
                      ..+.++.|-|....+++.+   ++.|.|.+|+++  .++++.+..++......+..|-+.   .+.|++++ -+|.+.||
T Consensus       231 ~~~~~i~~s~dg~~l~v~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~d---g~~l~~~~~~~~~v~v~  304 (343)
T 1ri6_A          231 RWAADIHITPDGRHLYACD---RTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHS---GKYLIAAGQKSHHISVY  304 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEE---TTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTT---SSEEEEECTTTCEEEEE
T ss_pred             CCccceEECCCCCEEEEEe---cCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCC---CCEEEEecCCCCeEEEE
Confidence            3566799999887666554   467899999998  677888888876555777777443   35677666 67999887

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=96.28  E-value=0.013  Score=49.74  Aligned_cols=72  Identities=14%  Similarity=0.189  Sum_probs=56.3

Q ss_pred             hhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278          17 EKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQ   96 (98)
Q Consensus        17 ~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~   96 (98)
                      ...++..+..+.|=|... +++.|+   ..|.|+||+....++  +...++..++.|..|-.    .+.||+|+-||.+.
T Consensus        13 ~~gh~~~V~~lafspdg~-~lAsgs---~Dg~I~lw~~~~~~~--~~~~~~~~~V~~l~fsp----g~~L~S~s~D~~v~   82 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQN-LLAIAT---VTGEVHIYGQQQVEV--VIKLEDRSAIKEMRFVK----GIYLVVINAKDTVY   82 (902)
T ss_dssp             EEECSSCEEEEEEETTTT-EEEEEE---TTSEEEEECSTTCEE--EEECSSCCCEEEEEEET----TTEEEEEETTCEEE
T ss_pred             ccCCCCCcEEEEECCCCC-EEEEEe---CCCEEEEEeCCCcEE--EEEcCCCCCEEEEEEcC----CCEEEEEECcCeEE
Confidence            345677899999999874 555664   458999999876654  44456778999999965    34899999999999


Q ss_pred             eC
Q psy9278          97 IW   98 (98)
Q Consensus        97 iw   98 (98)
                      ||
T Consensus        83 lW   84 (902)
T 2oaj_A           83 VL   84 (902)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=96.11  E-value=0.017  Score=42.29  Aligned_cols=72  Identities=11%  Similarity=0.128  Sum_probs=49.5

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecc----------------------cCceeeeecC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEK----------------------PNAFKCGTFN   77 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~----------------------~~~~KC~TFg   77 (98)
                      ....++++.|-|....+++.+    ..|.|+||+++.+.......+..                      ..+..+..|.
T Consensus       239 h~~~v~~~~~s~~~~~l~s~s----~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  314 (355)
T 3vu4_A          239 DRADVVDMKWSTDGSKLAVVS----DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI  314 (355)
T ss_dssp             CCSCEEEEEECTTSCEEEEEE----TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES
T ss_pred             CCCcEEEEEECCCCCEEEEEE----CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe
Confidence            456789999999987777766    46999999998875443332211                      1111334454


Q ss_pred             CCCCCCceEEEeecCceEEeC
Q psy9278          78 ASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        78 aSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..   ...|++|.-||.+.+|
T Consensus       315 ~d---~~~l~~~~~dg~~~~~  332 (355)
T 3vu4_A          315 SE---SSLVVVWPHTRMIETF  332 (355)
T ss_dssp             SS---SEEEEEETTTTEEEEE
T ss_pred             CC---CCEEEEEeCCCeEEEE
Confidence            33   5789999999999876

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.09  E-value=0.033  Score=46.64  Aligned_cols=73  Identities=15%  Similarity=0.332  Sum_probs=56.1

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+-.+..+.|-|....+++.|    ..|.|.||++..+++...-. .+..++.|..|-... ....+|+|+-||.+.+|
T Consensus       656 h~~~v~~~~~s~~~~~l~s~~----~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~~l~sg~~d~~v~vw  728 (1249)
T 3sfz_A          656 HEDEVLCCAFSSDDSYIATCS----ADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKS-NHLLLATGSNDFFLKLW  728 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSS-SCCEEEEEETTSCEEEE
T ss_pred             CCCCEEEEEEecCCCEEEEEe----CCCeEEEEECCCCceEEEEc-CCCCcEEEEEEecCC-CceEEEEEeCCCeEEEE
Confidence            356788999999887666655    57889999999886433222 478899999996532 34589999999999998

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=96.02  E-value=0.033  Score=40.42  Aligned_cols=73  Identities=8%  Similarity=0.131  Sum_probs=52.7

Q ss_pred             cceeeeeeecCCccEEEEccccC----CcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPK----GTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~pr----gtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i   97 (98)
                      -.+..+.|-|....+++.+....    +.|.|.+|+++.+++.  ..+..+....+..|.+.  .++-++++..+|.+.+
T Consensus       254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~--g~~l~~~~~~~~~v~v  329 (433)
T 3bws_A          254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI--DTIGPPGNKRHIVSGNT--ENKIYVSDMCCSKIEV  329 (433)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE--EEEEEEECEEEEEECSS--TTEEEEEETTTTEEEE
T ss_pred             CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE--eeccCCCCcceEEECCC--CCEEEEEecCCCEEEE
Confidence            34789999998876666553332    4789999999988653  34455557788888543  3456788899999998


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       330 ~  330 (433)
T 3bws_A          330 Y  330 (433)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=95.92  E-value=0.042  Score=40.66  Aligned_cols=65  Identities=11%  Similarity=0.225  Sum_probs=41.9

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ...+..+.|  . .++++.|.   ..|.|.||+++.++.  +.+++ +..++.|..|     ..++|++|+.||.+.+|
T Consensus       239 ~~~v~~~~~--~-~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~-----~~~~l~~~~~d~~i~i~  304 (445)
T 2ovr_B          239 VAAVRCVQY--D-GRRVVSGA---YDFMVKVWDPETETC--LHTLQGHTNRVYSLQF-----DGIHVVSGSLDTSIRVW  304 (445)
T ss_dssp             SSCEEEEEE--C-SSCEEEEE---TTSCEEEEEGGGTEE--EEEECCCSSCEEEEEE-----CSSEEEEEETTSCEEEE
T ss_pred             cccEEEEEE--C-CCEEEEEc---CCCEEEEEECCCCcE--eEEecCCCCceEEEEE-----CCCEEEEEeCCCeEEEE
Confidence            344556666  3 34444443   367888888877643  33443 5667888887     34578888888888877

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=95.89  E-value=0.048  Score=40.35  Aligned_cols=66  Identities=18%  Similarity=0.364  Sum_probs=47.3

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ...+..+.|-   .+.++.|+   ..|.|.+|+++.++....-. .+..++.|..|     ..+.||+|+.||.+.+|
T Consensus       199 ~~~v~~~~~~---~~~l~s~s---~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~-----~~~~l~~~~~dg~i~iw  264 (445)
T 2ovr_B          199 TSTVRCMHLH---EKRVVSGS---RDATLRVWDIETGQCLHVLM-GHVAAVRCVQY-----DGRRVVSGAYDFMVKVW  264 (445)
T ss_dssp             SSCEEEEEEE---TTEEEEEE---TTSEEEEEESSSCCEEEEEE-CCSSCEEEEEE-----CSSCEEEEETTSCEEEE
T ss_pred             CCcEEEEEec---CCEEEEEe---CCCEEEEEECCCCcEEEEEc-CCcccEEEEEE-----CCCEEEEEcCCCEEEEE
Confidence            4456677773   34455553   46899999998876543322 36778999998     24679999999999988

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=95.78  E-value=0.036  Score=41.19  Aligned_cols=76  Identities=16%  Similarity=0.325  Sum_probs=53.3

Q ss_pred             cCCcceeeeeee---cCCccEEEEccccCCcccEEEEEecCC--------ceeEEEEecccCceeeeecCCC--------
Q psy9278          19 SLDYQLFDCKWM---PCSAKFIVLGMKPKGTGSIQMYEINDG--------QPELVKTVEKPNAFKCGTFNAS--------   79 (98)
Q Consensus        19 sl~yT~fD~kWI---P~SArfV~lG~~prgtG~iqIyeL~~~--------~l~~~~e~e~~~~~KC~TFgaS--------   79 (98)
                      .++.-||.++|.   |...++++.|    ..+.|.||.....        +...+.......+..+..+...        
T Consensus        13 pl~~~p~~~~w~~~~~~~~~l~a~g----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (393)
T 4gq1_A           13 PLNVRPYTTTWCSQSPSCSNLLAIG----HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLH   88 (393)
T ss_dssp             CTTCCEEEEEECTTSGGGTTEEEEE----ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--
T ss_pred             cCCCCCeEEEEeCCCCCCCCEEEEE----CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCcccccccc
Confidence            567788999995   5667899999    4677999987543        3455555555555555554322        


Q ss_pred             ---------CCCCceEEEeecCceEEeC
Q psy9278          80 ---------PLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        80 ---------sl~~r~lAtGdf~G~L~iw   98 (98)
                               +...+.||+|.-|+.++||
T Consensus        89 ~~~~~~~~~~~~~~~las~~~d~~v~lw  116 (393)
T 4gq1_A           89 DGDGNVNSSPVYSLFLACVCQDNTVRLI  116 (393)
T ss_dssp             --------CCEEEEEEEEEETTSCEEEE
T ss_pred             CCCcceeecCCCCCEEEEEeCCCcEEEE
Confidence                     2234579999999999998

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=95.68  E-value=0.053  Score=36.08  Aligned_cols=71  Identities=15%  Similarity=0.164  Sum_probs=48.3

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEE-EeecCceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLA-TGDFEGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lA-tGdf~G~L~iw   98 (98)
                      ..+.++.|-|....+++.+....+...|-+++++.++++.+.   ....+.+..|-+.   .+.|+ +++.+|.+.||
T Consensus        85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~spd---g~~l~~~~~~~~~~~l~  156 (297)
T 2ojh_A           85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMT---KNLPSYWHGWSPD---GKSFTYCGIRDQVFDIY  156 (297)
T ss_dssp             CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECC---SSSSEEEEEECTT---SSEEEEEEEETTEEEEE
T ss_pred             ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEee---cCCCccceEECCC---CCEEEEEECCCCceEEE
Confidence            567889999999888877755555666666666666654443   3344666666433   35666 88899988887

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=95.64  E-value=0.068  Score=38.19  Aligned_cols=68  Identities=10%  Similarity=0.108  Sum_probs=50.8

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceE-EEeecCceEEeC
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYL-ATGDFEGKLQIW   98 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~l-AtGdf~G~L~iw   98 (98)
                      .+..+.|-|...++++.|.   ..|.|.+|++..+++  +..+.....+.+..|-..   .+.| ++|..+|.+.+|
T Consensus        33 ~~~~~~~s~dg~~l~~~~~---~d~~i~v~d~~~~~~--~~~~~~~~~v~~~~~spd---g~~l~~~~~~~~~v~v~  101 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANA---HSNDVSIIDTATNNV--IATVPAGSSPQGVAVSPD---GKQVYVTNMASSTLSVI  101 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEG---GGTEEEEEETTTTEE--EEEEECSSSEEEEEECTT---SSEEEEEETTTTEEEEE
T ss_pred             CcceEEECCCCCEEEEECC---CCCeEEEEECCCCeE--EEEEECCCCccceEECCC---CCEEEEEECCCCEEEEE
Confidence            4789999999988877664   468999999988765  445555668888888543   3445 566677999887

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.32  E-value=0.11  Score=35.76  Aligned_cols=65  Identities=12%  Similarity=0.214  Sum_probs=46.0

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .++.+.|-|...++++.      .|.|.+|+++.+++.  ..++......+..|-+.   .+.|+++..+|.|.+|
T Consensus       242 ~~~~~~~s~dg~~l~~~------~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~s~d---g~~l~~~~~~~~i~v~  306 (337)
T 1pby_B          242 FYFSTAVNPAKTRAFGA------YNVLESFDLEKNASI--KRVPLPHSYYSVNVSTD---GSTVWLGGALGDLAAY  306 (337)
T ss_dssp             CEEEEEECTTSSEEEEE------ESEEEEEETTTTEEE--EEEECSSCCCEEEECTT---SCEEEEESBSSEEEEE
T ss_pred             ceeeEEECCCCCEEEEe------CCeEEEEECCCCcCc--ceecCCCceeeEEECCC---CCEEEEEcCCCcEEEE
Confidence            45668898977665544      489999999887653  44444555667777443   3578888889999987

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=95.23  E-value=0.026  Score=45.14  Aligned_cols=48  Identities=15%  Similarity=0.366  Sum_probs=35.5

Q ss_pred             cccEEEEEecCCceeEEEEec-c-cCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          46 TGSIQMYEINDGQPELVKTVE-K-PNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        46 tG~iqIyeL~~~~l~~~~e~e-~-~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .|.|+||++..|++..  .++ + ...+-+..|-+.   .+.||+|+.||++.||
T Consensus       304 DgTIkIWDl~tGk~l~--tL~gH~~~vvs~vafSPD---G~~LaSGS~D~TIklW  353 (356)
T 2w18_A          304 SGTIAIWDLLLGQCTA--LLPPVSDQHWSFVKWSGT---DSHLLAGQKDGNIFVY  353 (356)
T ss_dssp             TSCEEEEETTTCSEEE--EECCC--CCCCEEEECSS---SSEEEEECTTSCEEEE
T ss_pred             CCcEEEEECCCCcEEE--EecCCCCCeEEEEEECCC---CCEEEEEECCCcEEEe
Confidence            5789999999987443  343 3 233456788654   4689999999999998

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=95.21  E-value=0.048  Score=36.27  Aligned_cols=70  Identities=17%  Similarity=0.138  Sum_probs=50.7

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecC-CceeEEEEecccCceeeeecCCCCCCCceEEEee--cCceEEe
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIND-GQPELVKTVEKPNAFKCGTFNASPLSERYLATGD--FEGKLQI   97 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~-~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGd--f~G~L~i   97 (98)
                      .-.+..+.|-|....+++.+     .|.|.+|+++. +++..+.+......+.|..|-+.   .+.||++.  -++...|
T Consensus        41 ~~~v~~~~~spdg~~l~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd---g~~l~~~~~~~~~~~~l  112 (297)
T 2ojh_A           41 PELFEAPNWSPDGKYLLLNS-----EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD---GALYAISDKVEFGKSAI  112 (297)
T ss_dssp             SSCCEEEEECTTSSEEEEEE-----TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT---SSEEEEEECTTTSSCEE
T ss_pred             CcceEeeEECCCCCEEEEEc-----CCeEEEEeCCCCCCceEeccccccccccceEECCC---CCEEEEEEeCCCCcceE
Confidence            45688999999988777642     57999999999 88776665544567778888543   46788887  3355555


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       113 ~  113 (297)
T 2ojh_A          113 Y  113 (297)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=95.20  E-value=0.14  Score=36.52  Aligned_cols=73  Identities=8%  Similarity=0.014  Sum_probs=51.3

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ...+..+.|-|...++++.+ ...+.|.|.+|++..++.  +..++....+.+..|-+.  .++-++++..+|.+.+|
T Consensus       199 ~~~~~~~~~~~~g~~l~~~~-~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~s~d--g~~l~~s~~~d~~v~v~  271 (391)
T 1l0q_A          199 EAAPSGIAVNPEGTKAYVTN-VDKYFNTVSMIDTGTNKI--TARIPVGPDPAGIAVTPD--GKKVYVALSFXNTVSVI  271 (391)
T ss_dssp             SSEEEEEEECTTSSEEEEEE-ECSSCCEEEEEETTTTEE--EEEEECCSSEEEEEECTT--SSEEEEEETTTTEEEEE
T ss_pred             CCCccceEECCCCCEEEEEe-cCcCCCcEEEEECCCCeE--EEEEecCCCccEEEEccC--CCEEEEEcCCCCEEEEE
Confidence            34678889999876666554 334689999999988754  455555556677777443  23344788999999987

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=95.19  E-value=0.17  Score=36.18  Aligned_cols=69  Identities=12%  Similarity=0.096  Sum_probs=49.6

Q ss_pred             eeeeeeecCCccEEEEccccCC-cccEEEEEec--CCceeEEEEecccCceeeeecCCCCCCCceEEEee-cCceEEeC
Q psy9278          24 LFDCKWMPCSAKFIVLGMKPKG-TGSIQMYEIN--DGQPELVKTVEKPNAFKCGTFNASPLSERYLATGD-FEGKLQIW   98 (98)
Q Consensus        24 ~fD~kWIP~SArfV~lG~~prg-tG~iqIyeL~--~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGd-f~G~L~iw   98 (98)
                      +.++.|=|....+++..   ++ .+.|.||+++  .++++.+..++......+..|-+.   .+.|++++ .++.+.||
T Consensus       261 ~~~i~~spdg~~l~v~~---~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spd---g~~l~~~~~~~~~v~v~  333 (361)
T 3scy_A          261 SGDIHLSPDGKYLYASN---RLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPN---GKYLLVACRDTNVIQIF  333 (361)
T ss_dssp             EEEEEECTTSSEEEEEE---CSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTT---SCEEEEEETTTTEEEEE
T ss_pred             cccEEECCCCCEEEEEC---CCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCC---CCEEEEEECCCCCEEEE
Confidence            56888999876665544   34 6889999996  678888888775445566677433   35677777 67888875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.18  E-value=0.05  Score=39.46  Aligned_cols=77  Identities=6%  Similarity=-0.026  Sum_probs=53.7

Q ss_pred             cCCcceeeee---eecCCccEEEEccccC----------CcccEEEEEecC--CceeEEEEecccCceeeeecCCCCCCC
Q psy9278          19 SLDYQLFDCK---WMPCSAKFIVLGMKPK----------GTGSIQMYEIND--GQPELVKTVEKPNAFKCGTFNASPLSE   83 (98)
Q Consensus        19 sl~yT~fD~k---WIP~SArfV~lG~~pr----------gtG~iqIyeL~~--~~l~~~~e~e~~~~~KC~TFgaSsl~~   83 (98)
                      ...--+|+..   |-|....+.++.....          ..|.+.||.++.  +.++.+..++.+....|..|-.   ..
T Consensus        58 ~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~---~~  134 (433)
T 3bws_A           58 DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFID---NT  134 (433)
T ss_dssp             ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESS---SS
T ss_pred             ccCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeC---CC
Confidence            3455678888   8887655554432222          123446777655  7889999888777777888854   56


Q ss_pred             ceEEEeecCceEEeC
Q psy9278          84 RYLATGDFEGKLQIW   98 (98)
Q Consensus        84 r~lAtGdf~G~L~iw   98 (98)
                      +.+++++-+|.+.+|
T Consensus       135 ~~~~~~~~~~~i~~~  149 (433)
T 3bws_A          135 RLAIPLLEDEGMDVL  149 (433)
T ss_dssp             EEEEEBTTSSSEEEE
T ss_pred             eEEEEeCCCCeEEEE
Confidence            788999999999987

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=95.10  E-value=0.17  Score=36.20  Aligned_cols=72  Identities=10%  Similarity=0.079  Sum_probs=50.2

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecC--CceeEEEEecc-cCceeeeecCCCCCCCceEEEeec-CceEEe
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIND--GQPELVKTVEK-PNAFKCGTFNASPLSERYLATGDF-EGKLQI   97 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~--~~l~~~~e~e~-~~~~KC~TFgaSsl~~r~lAtGdf-~G~L~i   97 (98)
                      ..|..+.|=|....+++.+....+.|.+++|.++.  |+++.+.+... .......+|     ..+.|++.++ +|.+.+
T Consensus        50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-----dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-----NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-----CSSEEEEEETTTTEEEE
T ss_pred             CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-----CCCEEEEEECCCCEEEE
Confidence            45566778898877777776555779999999987  78888887752 333344455     3456777775 677877


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       125 ~  125 (361)
T 3scy_A          125 F  125 (361)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=95.02  E-value=0.14  Score=36.20  Aligned_cols=71  Identities=8%  Similarity=0.195  Sum_probs=50.9

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEec-CCceeEEEEecc-cCceeeeecCCCCCCCceEEEeecC-ceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN-DGQPELVKTVEK-PNAFKCGTFNASPLSERYLATGDFE-GKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~-~~~l~~~~e~e~-~~~~KC~TFgaSsl~~r~lAtGdf~-G~L~iw   98 (98)
                      ..+.++.|=|....+++.+   ++.+.|.||+++ .++++.+..+.. ........|-+.   .+.|++++.+ +.+.||
T Consensus       240 ~~~~~i~~spdG~~l~v~~---~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spd---g~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSN---RGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPT---EAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEE---ETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTT---SSEEEEEETTTTEEEEE
T ss_pred             CcceeEEECCCCCEEEEEe---CCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCC---CCEEEEEEcCCCcEEEE
Confidence            4577899999987665554   357899999997 557888887764 334566777433   4678888765 888876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=94.06  E-value=0.23  Score=35.16  Aligned_cols=72  Identities=8%  Similarity=0.114  Sum_probs=49.7

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEee-cCceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGD-FEGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGd-f~G~L~iw   98 (98)
                      ..|..+.|=|... +++++. ..+.|.|.+|+++.++++.+.... .........|-+.   .+.|++++ -+|.+.+|
T Consensus        40 ~~p~~~a~spdg~-l~~~~~-~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd---g~~l~~~~~~~~~v~v~  113 (347)
T 3hfq_A           40 QNPTYLALSAKDC-LYSVDK-EDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA---RQLVYSANYHKGTAEVM  113 (347)
T ss_dssp             SCCCCEEECTTCE-EEEEEE-ETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT---TTEEEEEETTTTEEEEE
T ss_pred             CCcceEEEccCCe-EEEEEe-cCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC---CCEEEEEeCCCCEEEEE
Confidence            4566778888765 555543 356799999999999988887743 3444555556333   45688877 56888887

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=94.05  E-value=0.45  Score=34.62  Aligned_cols=71  Identities=11%  Similarity=0.102  Sum_probs=49.1

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEec-CCceeEEEEecc---cCceeeeecCCCCCCCceEEEee-cCceEE
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN-DGQPELVKTVEK---PNAFKCGTFNASPLSERYLATGD-FEGKLQ   96 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~-~~~l~~~~e~e~---~~~~KC~TFgaSsl~~r~lAtGd-f~G~L~   96 (98)
                      -.++.+.|-|...++++..   ++.+.|.+|+++ .|+++.+.+++-   ..+.....|-+.   .+.|++.+ .++.+.
T Consensus       145 ~~~~~~~~spdG~~l~~~~---~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd---g~~l~v~~~~~~~v~  218 (365)
T 1jof_A          145 TGIHGMVFDPTETYLYSAD---LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT---GNYLYALMEAGNRIC  218 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEE---TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT---SSEEEEEETTTTEEE
T ss_pred             CcceEEEECCCCCEEEEEc---CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC---CCEEEEEECCCCeEE
Confidence            3578899999886554432   467899999999 788887776652   345677777433   35666655 567777


Q ss_pred             eC
Q psy9278          97 IW   98 (98)
Q Consensus        97 iw   98 (98)
                      +|
T Consensus       219 v~  220 (365)
T 1jof_A          219 EY  220 (365)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=93.96  E-value=0.22  Score=42.28  Aligned_cols=68  Identities=10%  Similarity=0.179  Sum_probs=53.5

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCce-----eEEEEec-----ccCceeeeecCCCCCCCceEEEeec
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP-----ELVKTVE-----KPNAFKCGTFNASPLSERYLATGDF   91 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l-----~~~~e~e-----~~~~~KC~TFgaSsl~~r~lAtGdf   91 (98)
                      .++.++.|=|..-.+++.|    ..|.|+||+++.+++     -++..++     +...+.|..|-.    +. ||++..
T Consensus       130 ~sv~svafSPDG~~LAsgs----~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP----dg-Laass~  200 (588)
T 2j04_A          130 RTYHCFEWNPIESSIVVGN----EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE----DV-LVAALS  200 (588)
T ss_dssp             TCEEEEEECSSSSCEEEEE----TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET----TE-EEEEET
T ss_pred             ccEEEEEEcCCCCEEEEEc----CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC----Cc-EEEEeC
Confidence            4688999999987777766    489999999999875     2445432     456899998854    33 999999


Q ss_pred             CceEEeC
Q psy9278          92 EGKLQIW   98 (98)
Q Consensus        92 ~G~L~iw   98 (98)
                      |+.+.+|
T Consensus       201 D~tVrlW  207 (588)
T 2j04_A          201 NNSVFSM  207 (588)
T ss_dssp             TCCEEEE
T ss_pred             CCeEEEE
Confidence            9999998

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=93.96  E-value=0.11  Score=40.14  Aligned_cols=78  Identities=17%  Similarity=0.268  Sum_probs=57.6

Q ss_pred             CCCccceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCce
Q psy9278           6 KLDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERY   85 (98)
Q Consensus         6 ~~~kPQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~   85 (98)
                      .|+--|||..+++-+..-+|.+.+.|...+++..+..   .|.++||.+++++.+.+... +...+....|-    +++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~---~g~~~lw~~~~g~~~~lt~~-~~~~~~~~~~s----pd~~   77 (582)
T 3o4h_A            6 PVEFSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFS---EGSVNAYLYDGGETVKLNRE-PINSVLDPHYG----VGRV   77 (582)
T ss_dssp             CCCHHHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEE---TTEEEEEEEETTEEEECCSS-CCSEECEECTT----CSEE
T ss_pred             eccHHHHHHHHHHHhccchheeecCCCCCeEEEEEcc---CCceeEEEEcCCCcEeeecc-cccccccccCC----CCeE
Confidence            4666788888888778889999999999998887743   67899999988887655432 11355665553    2378


Q ss_pred             EEEeec
Q psy9278          86 LATGDF   91 (98)
Q Consensus        86 lAtGdf   91 (98)
                      +++++.
T Consensus        78 l~~~~~   83 (582)
T 3o4h_A           78 ILVRDV   83 (582)
T ss_dssp             EEEEEC
T ss_pred             EEEecc
Confidence            888887

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=93.62  E-value=0.22  Score=39.24  Aligned_cols=74  Identities=11%  Similarity=0.152  Sum_probs=51.9

Q ss_pred             CcceeeeeeecCCccEEEEcc-ccCCcccEEEEEecCCceeEEEEecccC---ceeeeecCCCCCCCceEEEeecCceEE
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGM-KPKGTGSIQMYEINDGQPELVKTVEKPN---AFKCGTFNASPLSERYLATGDFEGKLQ   96 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~-~prgtG~iqIyeL~~~~l~~~~e~e~~~---~~KC~TFgaSsl~~r~lAtGdf~G~L~   96 (98)
                      ...+.++.| |...++++... .....+.|.+|+++.+++..+.+.....   .+....|.+.   .+.+++++-+|...
T Consensus       286 ~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd---g~~~~~~~~~g~~~  361 (741)
T 2ecf_A          286 DIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD---GSILWSSERTGFQH  361 (741)
T ss_dssp             SEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT---SCEEEEECTTSSCE
T ss_pred             ceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC---CeEEEEecCCCccE
Confidence            456788999 99887776654 4445788999999999877766544332   2345566433   34788999999877


Q ss_pred             eC
Q psy9278          97 IW   98 (98)
Q Consensus        97 iw   98 (98)
                      ||
T Consensus       362 l~  363 (741)
T 2ecf_A          362 LY  363 (741)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=93.43  E-value=0.36  Score=36.39  Aligned_cols=70  Identities=19%  Similarity=0.291  Sum_probs=50.4

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEE-EeecCceEEe
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLA-TGDFEGKLQI   97 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lA-tGdf~G~L~i   97 (98)
                      ..+..++|-|...+++..+ ..++...|.+|++..++...+..  .+..+.+..|-..   .+.|| +++.+|...|
T Consensus       179 ~~v~~~~~Spdg~~la~~s-~~~~~~~i~~~d~~tg~~~~l~~--~~~~~~~~~~spd---g~~la~~~~~~g~~~i  249 (415)
T 2hqs_A          179 QPLMSPAWSPDGSKLAYVT-FESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPD---GSKLAFALSKTGSLNL  249 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEE-CTTSSCEEEEEETTTCCEEEEEC--CSSCEEEEEECTT---SSEEEEEECTTSSCEE
T ss_pred             CcceeeEEcCCCCEEEEEE-ecCCCcEEEEEECCCCcEEEeec--CCCcccCEEEcCC---CCEEEEEEecCCCceE
Confidence            4578899999987766655 45567899999999998765543  4557788888543   35677 7887776433

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=93.25  E-value=0.35  Score=33.45  Aligned_cols=71  Identities=8%  Similarity=0.084  Sum_probs=46.2

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecc-----cCceeeeecCCCCCCCceEEEeecC----
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEK-----PNAFKCGTFNASPLSERYLATGDFE----   92 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~-----~~~~KC~TFgaSsl~~r~lAtGdf~----   92 (98)
                      +.+..+.|-|...++++.+   .+.|.|.+|+++.+++...-+...     .....+..|-.   ..+.|++++-+    
T Consensus        43 ~~~~~~~~s~dg~~~~v~~---~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp---dg~~l~~~~~~~~~~  116 (349)
T 1jmx_B           43 FGPGTAMMAPDNRTAYVLN---NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP---DGKEVYATVNPTQRL  116 (349)
T ss_dssp             CSSCEEEECTTSSEEEEEE---TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT---TSSEEEEEEEEEEEC
T ss_pred             CCCceeEECCCCCEEEEEe---CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC---CCCEEEEEccccccc
Confidence            3688899999986666655   356889999998887554333322     11244455533   24678888754    


Q ss_pred             --------ceEEeC
Q psy9278          93 --------GKLQIW   98 (98)
Q Consensus        93 --------G~L~iw   98 (98)
                              +.+.+|
T Consensus       117 ~~~~~~~~~~i~~~  130 (349)
T 1jmx_B          117 NDHYVVKPPRLEVF  130 (349)
T ss_dssp             SSCEEECCCEEEEE
T ss_pred             ccccccCCCeEEEE
Confidence                    777775

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=92.98  E-value=0.58  Score=32.29  Aligned_cols=65  Identities=14%  Similarity=0.179  Sum_probs=43.0

Q ss_pred             ceeeeeeec-CCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          23 QLFDCKWMP-CSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        23 T~fD~kWIP-~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .++.+.|-| ... ++.++     .|.|.+|+++.+++..  .++......+..|-+.   .+.|++++-+|.|.+|
T Consensus       256 ~~~~~~~sp~dg~-~l~~~-----~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~s~d---g~~l~~~~~~~~v~v~  321 (349)
T 1jmx_B          256 LYFTGLRSPKDPN-QIYGV-----LNRLAKYDLKQRKLIK--AANLDHTYYCVAFDKK---GDKLYLGGTFNDLAVF  321 (349)
T ss_dssp             CEEEEEECSSCTT-EEEEE-----ESEEEEEETTTTEEEE--EEECSSCCCEEEECSS---SSCEEEESBSSEEEEE
T ss_pred             cceeeEecCCCCC-EEEEE-----cCeEEEEECccCeEEE--EEcCCCCccceEECCC---CCEEEEecCCCeEEEE
Confidence            355666778 554 44454     7899999998876543  3334444556666433   3567778888999987

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=92.03  E-value=0.98  Score=35.94  Aligned_cols=73  Identities=15%  Similarity=0.262  Sum_probs=52.1

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCC-CCCCceEEEeec-CceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNAS-PLSERYLATGDF-EGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaS-sl~~r~lAtGdf-~G~L~iw   98 (98)
                      +.++.+.+-|...++++.+.   + |.|.+|+++...++++.+++.........|-.. ....+.|+++++ ++.+.||
T Consensus       179 ~~~~~v~~spdg~~l~v~~~---d-~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~  253 (543)
T 1nir_A          179 YAVHISRMSASGRYLLVIGR---D-ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM  253 (543)
T ss_dssp             TTEEEEEECTTSCEEEEEET---T-SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEE
T ss_pred             cccceEEECCCCCEEEEECC---C-CeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEE
Confidence            44888889997766666552   3 999999996555777888876666677777330 013578888885 7988886

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=91.84  E-value=0.39  Score=37.88  Aligned_cols=68  Identities=12%  Similarity=0.227  Sum_probs=47.3

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEeccc--CceeeeecCCCCCCCceEEEeec---------
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKP--NAFKCGTFNASPLSERYLATGDF---------   91 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~--~~~KC~TFgaSsl~~r~lAtGdf---------   91 (98)
                      ...+.+|.|.. +++..+    ..|.|.+|+++.++...+.+....  .++.+..|-+   ..+.||++.-         
T Consensus        17 ~~~~~~~s~dg-~~~~~~----~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp---Dg~~la~~~~~~~~~~~s~   88 (719)
T 1z68_A           17 KTFFPNWISGQ-EYLHQS----ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP---DRQFVYLESDYSKLWRYSY   88 (719)
T ss_dssp             CCCCCEESSSS-EEEEEC----TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT---TSSEEEEEEEEEECSSSCE
T ss_pred             CCCccEECCCC-eEEEEc----CCCCEEEEEcCCCcEEEEEccccccccceeeEEECC---CCCeEEEEecCceeEEeec
Confidence            34689999999 788766    367999999999987766543321  2366666633   3467877654         


Q ss_pred             CceEEeC
Q psy9278          92 EGKLQIW   98 (98)
Q Consensus        92 ~G~L~iw   98 (98)
                      ++.|.||
T Consensus        89 ~~~i~~~   95 (719)
T 1z68_A           89 TATYYIY   95 (719)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEEE
Confidence            6788776

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=91.83  E-value=0.75  Score=34.61  Aligned_cols=63  Identities=14%  Similarity=0.175  Sum_probs=46.9

Q ss_pred             cCCccEEEEccccCCc--ccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCc---eEEeC
Q psy9278          31 PCSAKFIVLGMKPKGT--GSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEG---KLQIW   98 (98)
Q Consensus        31 P~SArfV~lG~~prgt--G~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G---~L~iw   98 (98)
                      |...|++.+.....+.  +.|.+|+++++++..+..  +...+.+..|-..   .+.||++++++   .|.+|
T Consensus       141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~--~~~~v~~~~~Spd---g~~la~~s~~~~~~~i~~~  208 (415)
T 2hqs_A          141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHR--SPQPLMSPAWSPD---GSKLAYVTFESGRSALVIQ  208 (415)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEE--ESSCEEEEEECTT---SSEEEEEECTTSSCEEEEE
T ss_pred             cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeC--CCCcceeeEEcCC---CCEEEEEEecCCCcEEEEE
Confidence            4477888888764433  899999999877766654  4567888888543   46899999986   77776

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=91.69  E-value=0.64  Score=36.73  Aligned_cols=60  Identities=12%  Similarity=0.178  Sum_probs=45.4

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      -+++++|+|.+  |+++.    ..|.|.+|+|.++.+..+     ...++|...-...     ++.|.=||++.+|
T Consensus       128 ~v~~i~~~~p~--~av~~----~dG~L~v~dl~~~~~~~~-----~~~Vs~v~WSpkG-----~~vg~~dg~i~~~  187 (388)
T 1xip_A          128 PVFQLKNVNNT--LVILN----SVNDLSALDLRTKSTKQL-----AQNVTSFDVTNSQ-----LAVLLKDRSFQSF  187 (388)
T ss_dssp             CEEEEEECSSE--EEEEE----TTSEEEEEETTTCCEEEE-----EESEEEEEECSSE-----EEEEETTSCEEEE
T ss_pred             ceeeEEecCCC--EEEEE----CCCCEEEEEccCCccccc-----cCCceEEEEcCCc-----eEEEEcCCcEEEE
Confidence            36799999885  66654    789999999998877542     3478898774432     7888888988875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=91.57  E-value=0.89  Score=33.02  Aligned_cols=75  Identities=16%  Similarity=0.209  Sum_probs=43.8

Q ss_pred             ceeeee-eecCCccEEEEccccCC---cccEEEEEec-CCceeEEEE-ecc-cCceeeeecCCCCCCCceEEEeecC-ce
Q psy9278          23 QLFDCK-WMPCSAKFIVLGMKPKG---TGSIQMYEIN-DGQPELVKT-VEK-PNAFKCGTFNASPLSERYLATGDFE-GK   94 (98)
Q Consensus        23 T~fD~k-WIP~SArfV~lG~~prg---tG~iqIyeL~-~~~l~~~~e-~e~-~~~~KC~TFgaSsl~~r~lAtGdf~-G~   94 (98)
                      .+.++. |=|... ++.++..-..   .|.|+||.++ .|++..+.+ ++. ........|-+..+..++|++++.+ |.
T Consensus       255 ~~~~i~~~spdG~-~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~  333 (365)
T 1jof_A          255 YRADVCALTFSGK-YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW  333 (365)
T ss_dssp             EEEEEEEECTTSS-EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred             ccccEEEECCCCC-EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCe
Confidence            578899 888865 4445443322   4599999997 677765433 321 1112222221100035788888875 89


Q ss_pred             EEeC
Q psy9278          95 LQIW   98 (98)
Q Consensus        95 L~iw   98 (98)
                      +.||
T Consensus       334 v~v~  337 (365)
T 1jof_A          334 LEIY  337 (365)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9887

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=90.90  E-value=1.3  Score=30.73  Aligned_cols=72  Identities=14%  Similarity=0.097  Sum_probs=46.8

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEeccc-----Ccee---eeecCCCCCCCceE-EEeec
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKP-----NAFK---CGTFNASPLSERYL-ATGDF   91 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~-----~~~K---C~TFgaSsl~~r~l-AtGdf   91 (98)
                      ...+.++.|-|....+++...   +.+.|.+|++..++++.+..+...     .+..   +..|.   ...+.| +++.-
T Consensus       220 ~~~~~~~~~spdg~~l~v~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---pdg~~l~v~~~~  293 (331)
T 3u4y_A          220 NNLPGTIVVSRDGSTVYVLTE---STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALN---KTETKLFISANI  293 (331)
T ss_dssp             SSCCCCEEECTTSSEEEEECS---SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEEC---TTSSEEEEEETT
T ss_pred             CCCCceEEECCCCCEEEEEEc---CCCEEEEEECCCCceeeecccccccccCCCCcccccceEEC---CCCCEEEEecCC
Confidence            466788999998876655543   678899999999999877765533     1111   11232   223455 45556


Q ss_pred             CceEEeC
Q psy9278          92 EGKLQIW   98 (98)
Q Consensus        92 ~G~L~iw   98 (98)
                      +|.+.||
T Consensus       294 ~~~v~v~  300 (331)
T 3u4y_A          294 SRELKVF  300 (331)
T ss_dssp             TTEEEEE
T ss_pred             CCcEEEE
Confidence            7788887

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=90.90  E-value=1.1  Score=34.61  Aligned_cols=69  Identities=13%  Similarity=0.086  Sum_probs=50.6

Q ss_pred             eeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCc--eEEeC
Q psy9278          25 FDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEG--KLQIW   98 (98)
Q Consensus        25 fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G--~L~iw   98 (98)
                      ++..|=|+..+++..+....+.+.|.+|+++.++++.+.  +.+..+....|-.   ..+.||+++-+|  .|.+|
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~--~~~~~~~~~~~Sp---DG~~l~~~~~~~~~~i~~~  223 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD--SGEGSFSSASISP---GMKVTAGLETAREARLVTV  223 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEEC--CSSCEEEEEEECT---TSCEEEEEECSSCEEEEEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEee--cCCCccccceECC---CCCEEEEccCCCeeEEEEE
Confidence            788899998887777776666788999999999987663  3444556666632   346899999999  56554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=90.55  E-value=0.84  Score=35.76  Aligned_cols=67  Identities=15%  Similarity=0.258  Sum_probs=48.4

Q ss_pred             eeeeeeecCCccEEEEccc-----------------------------cCCcccEEEEEecCCceeEEEEe-cccCceee
Q psy9278          24 LFDCKWMPCSAKFIVLGMK-----------------------------PKGTGSIQMYEINDGQPELVKTV-EKPNAFKC   73 (98)
Q Consensus        24 ~fD~kWIP~SArfV~lG~~-----------------------------prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC   73 (98)
                      +..+.|-|...++++....                             .++.+.|.+|+++.++...+... .+...+.+
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  262 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN  262 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence            5788999999888877521                             34678899999999987666543 34566788


Q ss_pred             eecCCCCCCCceEEEeecCc
Q psy9278          74 GTFNASPLSERYLATGDFEG   93 (98)
Q Consensus        74 ~TFgaSsl~~r~lAtGdf~G   93 (98)
                      ..|-..   .+.||++..++
T Consensus       263 ~~~spd---g~~l~~~~~~~  279 (706)
T 2z3z_A          263 LSWSPD---ENILYVAEVNR  279 (706)
T ss_dssp             EEECTT---SSEEEEEEECT
T ss_pred             EEEECC---CCEEEEEEeCC
Confidence            888543   46788877765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=90.47  E-value=1.9  Score=29.88  Aligned_cols=69  Identities=10%  Similarity=0.002  Sum_probs=44.7

Q ss_pred             eee-eeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEee-cCce-EEeC
Q psy9278          24 LFD-CKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGD-FEGK-LQIW   98 (98)
Q Consensus        24 ~fD-~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGd-f~G~-L~iw   98 (98)
                      +.. +.|-|...+++ ++....+.+.|.+|+++.+++  +..++......+..|-+..   ++|++.+ -++. +.+|
T Consensus        85 ~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~--~~~~~~~~~~~~~~~spdg---~~l~~~~~~~~~~i~~~  156 (331)
T 3u4y_A           85 SMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKF--ISTIPIPYDAVGIAISPNG---NGLILIDRSSANTVRRF  156 (331)
T ss_dssp             CCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEE--EEEEECCTTEEEEEECTTS---SCEEEEEETTTTEEEEE
T ss_pred             CccceEECCCCCEEE-EecCCCCcccEEEEECCCCCe--EEEEECCCCccceEECCCC---CEEEEEecCCCceEEEE
Confidence            445 88989887777 554444556999999988865  3445545556777775442   3455544 4477 7765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=89.81  E-value=2.2  Score=29.77  Aligned_cols=63  Identities=13%  Similarity=0.130  Sum_probs=42.2

Q ss_pred             ceeeeeeecCCccEEEEcccc-CCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeec
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKP-KGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDF   91 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~p-rgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf   91 (98)
                      .+...+|-|...+++.+.... +++..|-+++++.++...+...+.   +....|-+   ..+.||....
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~wsp---dg~~l~~~~~  123 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN---IRSLEWNE---DSRKLLIVGF  123 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE---EEEEEECT---TSSEEEEEEE
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC---ccceeECC---CCCEEEEEEc
Confidence            466789999999888876543 245557777778888776665543   66666632   2467777754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=89.73  E-value=1.4  Score=34.59  Aligned_cols=77  Identities=12%  Similarity=0.224  Sum_probs=50.2

Q ss_pred             CcceeeeeeecCCccEEEEcc-ccCCcccEEEEEecCC-ceeEEEEecccC---ceeeeecCCCCCCCceEEEeecCceE
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGM-KPKGTGSIQMYEINDG-QPELVKTVEKPN---AFKCGTFNASPLSERYLATGDFEGKL   95 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~-~prgtG~iqIyeL~~~-~l~~~~e~e~~~---~~KC~TFgaSsl~~r~lAtGdf~G~L   95 (98)
                      +..+..+.|-|...++++... .......|.+|++..+ +++.+.+.+...   .+.+..|-+. ...+.|++++-+|..
T Consensus       257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~-~dg~~l~~~~~~g~~  335 (706)
T 2z3z_A          257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPG-SNNQFIWQSRRDGWN  335 (706)
T ss_dssp             TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTT-CSSEEEEEECTTSSC
T ss_pred             ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecC-CCCEEEEEEccCCcc
Confidence            345788999999887776542 2234568888998888 666665433322   2245566430 023588999999988


Q ss_pred             EeC
Q psy9278          96 QIW   98 (98)
Q Consensus        96 ~iw   98 (98)
                      .||
T Consensus       336 ~l~  338 (706)
T 2z3z_A          336 HLY  338 (706)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=89.61  E-value=1.9  Score=29.39  Aligned_cols=70  Identities=9%  Similarity=0.042  Sum_probs=45.3

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccC----ceeeeecCCCCCCCceEEEee--------
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPN----AFKCGTFNASPLSERYLATGD--------   90 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~----~~KC~TFgaSsl~~r~lAtGd--------   90 (98)
                      .+.++.|-|...++++.+.   ..|.|.+|++..+++...-....+.    ...+..|-+   ..+.|++++        
T Consensus        35 ~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~~~~~  108 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP---DGKTLAIYESPVRLELT  108 (337)
T ss_dssp             CCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT---TSSEEEEEEEEEEECSS
T ss_pred             CccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC---CCCEEEEEecccccccc
Confidence            5888999999877766653   4678999999888754333322211    344455532   245788876        


Q ss_pred             ----cCceEEeC
Q psy9278          91 ----FEGKLQIW   98 (98)
Q Consensus        91 ----f~G~L~iw   98 (98)
                          -++.|.+|
T Consensus       109 ~~~~~~~~i~v~  120 (337)
T 1pby_B          109 HFEVQPTRVALY  120 (337)
T ss_dssp             CEEECCCEEEEE
T ss_pred             cccccCceEEEE
Confidence                46888776

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=89.58  E-value=1.5  Score=34.54  Aligned_cols=82  Identities=17%  Similarity=0.180  Sum_probs=53.6

Q ss_pred             ehhhhhcCCcc---eeeeeeecCCccEEEEccccC--CcccEEEEEecCCceeEEEEeccc-------------------
Q psy9278          13 ICLVEKSLDYQ---LFDCKWMPCSAKFIVLGMKPK--GTGSIQMYEINDGQPELVKTVEKP-------------------   68 (98)
Q Consensus        13 Iehi~ksl~yT---~fD~kWIP~SArfV~lG~~pr--gtG~iqIyeL~~~~l~~~~e~e~~-------------------   68 (98)
                      ++.+-++..|+   +.++.|-|...+++..+....  +...|.+|+++.++...+......                   
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (741)
T 2ecf_A           25 LEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQR  104 (741)
T ss_dssp             HHHHTSSSCTTCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC------------------
T ss_pred             HHHHhccCCcCCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhh
Confidence            44454433333   789999999988888775322  245899999999987666554322                   


Q ss_pred             ----CceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          69 ----NAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        69 ----~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                          .++.+..|-.   ..+.||+++- |.|.+|
T Consensus       105 ~~~~~~v~~~~~Sp---Dg~~l~~~~~-~~i~~~  134 (741)
T 2ecf_A          105 IAAMTGIVDYQWSP---DAQRLLFPLG-GELYLY  134 (741)
T ss_dssp             --CCEESCCCEECT---TSSEEEEEET-TEEEEE
T ss_pred             hccccCcceeEECC---CCCEEEEEeC-CcEEEE
Confidence                2355666633   2467888775 777776

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=89.17  E-value=0.86  Score=36.34  Aligned_cols=53  Identities=11%  Similarity=0.115  Sum_probs=36.5

Q ss_pred             cccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          46 TGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        46 tG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+.+++|.++.+.-.+....-++....+.+|-...-....||+|+.|+.+.||
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIW  208 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIW  208 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEE
T ss_pred             CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEE
Confidence            66777888855322233333466677777776544456789999999999998

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=88.39  E-value=2.2  Score=29.46  Aligned_cols=76  Identities=4%  Similarity=0.014  Sum_probs=46.6

Q ss_pred             cCCcceeeeeeecCCccEEEEccccC---CcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceE
Q psy9278          19 SLDYQLFDCKWMPCSAKFIVLGMKPK---GTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKL   95 (98)
Q Consensus        19 sl~yT~fD~kWIP~SArfV~lG~~pr---gtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L   95 (98)
                      .+.-.++++.|-|...++.+.....+   ..|.|.+|+++.+++..  .++.........|-..  .++-++++..+|.|
T Consensus        38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~s~d--g~~l~v~~~~~~~v  113 (353)
T 3vgz_A           38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ--AIHNDLKPFGATINNT--TQTLWFGNTVNSAV  113 (353)
T ss_dssp             EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEE--EEEESSCCCSEEEETT--TTEEEEEETTTTEE
T ss_pred             hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE--EEecCCCcceEEECCC--CCEEEEEecCCCEE
Confidence            44566899999998877766654332   27889999888776443  3333333344444332  23345555667888


Q ss_pred             EeC
Q psy9278          96 QIW   98 (98)
Q Consensus        96 ~iw   98 (98)
                      .+|
T Consensus       114 ~~~  116 (353)
T 3vgz_A          114 TAI  116 (353)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            775

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=86.55  E-value=4.7  Score=27.79  Aligned_cols=70  Identities=10%  Similarity=0.158  Sum_probs=43.7

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ...+.++.|-|...++.+..   .+.|.|.+|++..+++...-..  +.+ .+..|-..  .++-++++.-+|.+.+|
T Consensus       230 ~~~~~~~~~s~dg~~l~~~~---~~~~~v~~~d~~~~~~~~~~~~--~~~-~~~~~s~d--g~~l~v~~~~~~~v~~~  299 (353)
T 3vgz_A          230 EHFFINISLDTARQRAFITD---SKAAEVLVVDTRNGNILAKVAA--PES-LAVLFNPA--RNEAYVTHRQAGKVSVI  299 (353)
T ss_dssp             CCCEEEEEEETTTTEEEEEE---SSSSEEEEEETTTCCEEEEEEC--SSC-CCEEEETT--TTEEEEEETTTTEEEEE
T ss_pred             CcccceEEECCCCCEEEEEe---CCCCEEEEEECCCCcEEEEEEc--CCC-ceEEECCC--CCEEEEEECCCCeEEEE
Confidence            34567789999887766554   4578999999988876443333  333 23445322  23334444468888876

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=85.79  E-value=3.3  Score=32.85  Aligned_cols=71  Identities=14%  Similarity=0.177  Sum_probs=47.0

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+..+.+-|...+|++-.   +++|.|.+|++..++.-.+..++.........|-+  ...+-++++..++++.+|
T Consensus       281 ~v~~i~~s~~~~~~~vs~---~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp--dg~~l~va~~~~~~v~v~  351 (543)
T 1nir_A          281 RVAAIIASHEHPEFIVNV---KETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS--SHRYFMTAANNSNKVAVI  351 (543)
T ss_dssp             CEEEEEECSSSSEEEEEE---TTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT--TSCEEEEEEGGGTEEEEE
T ss_pred             ceEEEEECCCCCEEEEEE---CCCCeEEEEEecCCCcceeEEeccCcCccCceECC--CCCEEEEEecCCCeEEEE
Confidence            355666667666776654   57899999999887654455666555555666633  234445666678898886

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=84.88  E-value=4.8  Score=31.41  Aligned_cols=45  Identities=9%  Similarity=0.172  Sum_probs=33.2

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV   65 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~   65 (98)
                      +..+.++.|-|....+++........+.|.+|+++.+++..+.+.
T Consensus       254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~  298 (723)
T 1xfd_A          254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED  298 (723)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence            456778999999876555555555678899999999987665543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=83.89  E-value=4.2  Score=34.21  Aligned_cols=70  Identities=13%  Similarity=0.158  Sum_probs=49.4

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecC--------
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFE--------   92 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~--------   92 (98)
                      ...+..+.|-|...++++.+    ..+.|.+|+++.+++..+.+ .+...+.+..|-..   .+.||++..+        
T Consensus       378 ~~~~~~~~~SpDG~~la~~~----~~~~v~~~d~~tg~~~~~~~-~~~~~v~~~~~SpD---G~~la~~~~~~~~~~~~~  449 (1045)
T 1k32_A          378 LGNVFAMGVDRNGKFAVVAN----DRFEIMTVDLETGKPTVIER-SREAMITDFTISDN---SRFIAYGFPLKHGETDGY  449 (1045)
T ss_dssp             CCSEEEEEECTTSSEEEEEE----TTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTT---SCEEEEEEEECSSTTCSC
T ss_pred             ccceeeeEECCCCCEEEEEC----CCCeEEEEECCCCceEEecc-CCCCCccceEECCC---CCeEEEEecCccccccCC
Confidence            45678899999987777554    34689999999998877654 24556677777333   4678877654        


Q ss_pred             --ceEEeC
Q psy9278          93 --GKLQIW   98 (98)
Q Consensus        93 --G~L~iw   98 (98)
                        +.|.+|
T Consensus       450 ~~~~i~l~  457 (1045)
T 1k32_A          450 VMQAIHVY  457 (1045)
T ss_dssp             CEEEEEEE
T ss_pred             CCCeEEEE
Confidence              377776

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=82.95  E-value=2.1  Score=33.68  Aligned_cols=68  Identities=10%  Similarity=0.091  Sum_probs=47.6

Q ss_pred             cceeeeeeecCCccEEEEcccc-----CCcccEEEEEecCCce---eEEEEecccCceeeeecCCCCCCCceEEEeecCc
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKP-----KGTGSIQMYEINDGQP---ELVKTVEKPNAFKCGTFNASPLSERYLATGDFEG   93 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~p-----rgtG~iqIyeL~~~~l---~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G   93 (98)
                      +.+....|=|...+++......     .+.|.|.||+++.+++   ..+     +..+....|-..   -+.||.+. ++
T Consensus        60 ~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-----~~~~~~~~~SPD---G~~la~~~-~~  130 (719)
T 1z68_A           60 VNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-----PRPIQYLCWSPV---GSKLAYVY-QN  130 (719)
T ss_dssp             TTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-----CSSBCCEEECSS---TTCEEEEE-TT
T ss_pred             cceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-----CcccccceECCC---CCEEEEEE-CC
Confidence            3578899999987777665432     2368999999999987   333     244666666443   36788885 78


Q ss_pred             eEEeC
Q psy9278          94 KLQIW   98 (98)
Q Consensus        94 ~L~iw   98 (98)
                      +|.+|
T Consensus       131 ~i~~~  135 (719)
T 1z68_A          131 NIYLK  135 (719)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            88776

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=82.38  E-value=2.4  Score=29.83  Aligned_cols=69  Identities=14%  Similarity=0.108  Sum_probs=44.8

Q ss_pred             eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCC-CCCCceEEEeecCceEEeC
Q psy9278          24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNAS-PLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaS-sl~~r~lAtGdf~G~L~iw   98 (98)
                      +.+..|-|...+++.+... .|...|.+++++.++...+..-...     ..++.. +...+.||...-++.|.+|
T Consensus        38 ~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~~~~~l~~~~~~-----~~~~~~~spdg~~l~~~~~~~~l~~~  107 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQQAVQLTEGKGD-----NTFGGFISTDERAFFYVKNELNLMKV  107 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTTEEEECCCSSCB-----CTTTCEECTTSSEEEEEETTTEEEEE
T ss_pred             eecCcCCCCCCEEEEEEec-CCCceEEEEECCCCcEEEeecCCCC-----ccccceECCCCCEEEEEEcCCcEEEE
Confidence            6778999998887777654 5666788888888876655332211     111121 3345789888888877664

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=82.29  E-value=3.6  Score=32.08  Aligned_cols=73  Identities=11%  Similarity=0.031  Sum_probs=47.4

Q ss_pred             cceeeeeeecCCccEEEEccccCC-----cccEEEEEecCCceeEEEEecc-cCceeeeecCCCCCCCceEEEeecCceE
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKG-----TGSIQMYEINDGQPELVKTVEK-PNAFKCGTFNASPLSERYLATGDFEGKL   95 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prg-----tG~iqIyeL~~~~l~~~~e~e~-~~~~KC~TFgaSsl~~r~lAtGdf~G~L   95 (98)
                      +.+.++.|=|...+++......+.     .+.|.||+++.++++.+...+. ...+.+..|-.   ..+.||.+.- ++|
T Consensus        61 ~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SP---dG~~la~~~~-~~i  136 (723)
T 1xfd_A           61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP---KGQQLIFIFE-NNI  136 (723)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS---STTCEEEEET-TEE
T ss_pred             cccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECC---CCCEEEEEEC-CeE
Confidence            357889999998777666543332     3899999999998865544332 22245555533   2467888774 666


Q ss_pred             EeC
Q psy9278          96 QIW   98 (98)
Q Consensus        96 ~iw   98 (98)
                      .+|
T Consensus       137 ~~~  139 (723)
T 1xfd_A          137 YYC  139 (723)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=81.21  E-value=3.3  Score=33.36  Aligned_cols=41  Identities=10%  Similarity=0.375  Sum_probs=30.8

Q ss_pred             cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe
Q psy9278          19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV   65 (98)
Q Consensus        19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~   65 (98)
                      ......+.+.|+|.. ++++.+     .|.|.+|+++.|+...+-+.
T Consensus        14 ~~~~~~~~~~w~~dg-~~~~~~-----~~~i~~~~~~~~~~~~~~~~   54 (740)
T 4a5s_A           14 TYRLKLYSLRWISDH-EYLYKQ-----ENNILVFNAEYGNSSVFLEN   54 (740)
T ss_dssp             CSCCCCCCEEECSSS-EEEEEE-----TTEEEEEETTTCCEEEEECT
T ss_pred             cccccccccEECCCC-cEEEEc-----CCcEEEEECCCCceEEEEec
Confidence            344557899999998 677665     58999999998886655333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	98.67
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.12
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.05
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.94
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.73
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.73
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.64
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.62
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.6
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.53
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.51
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.49
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.49
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.44
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.42
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.4
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.21
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.17
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	96.79
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.66
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.61
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.54
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.48
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.26
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	95.86
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.78
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	95.07
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	94.96
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.48
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	94.45
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	94.42
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	93.23
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	93.17
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	92.09
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	91.96
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	90.07
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	88.72
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	82.66
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	80.15

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=6.1e-08  Score=63.65  Aligned_cols=81  Identities=17%  Similarity=0.345  Sum_probs=62.3

Q ss_pred             ceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc--eeEEEEecccCceeeeecCCCCCCCceEEE
Q psy9278          11 QIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ--PELVKTVEKPNAFKCGTFNASPLSERYLAT   88 (98)
Q Consensus        11 QIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~--l~~~~e~e~~~~~KC~TFgaSsl~~r~lAt   88 (98)
                      |+|+ |.+.-.=++.+++|-|.... ++.|+   ..|.|+||+++.++  .++....++..++.|..|-..+  ...||+
T Consensus         2 ~~v~-~~~~h~d~I~~l~fsp~~~~-L~s~s---~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~--~~~l~s   74 (342)
T d1yfqa_           2 QIVQ-IEQAPKDYISDIKIIPSKSL-LLITS---WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT--DLQIYV   74 (342)
T ss_dssp             EEEE-CSSCCSSCEEEEEEEGGGTE-EEEEE---TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS--SEEEEE
T ss_pred             CeEE-cCCCCCCCEEEEEEeCCCCE-EEEEE---CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCC--CCEEEE
Confidence            4455 55555668999999997654 55554   47899999997664  4566667789999999995543  568999


Q ss_pred             eecCceEEeC
Q psy9278          89 GDFEGKLQIW   98 (98)
Q Consensus        89 Gdf~G~L~iw   98 (98)
                      |+.||.+.+|
T Consensus        75 g~~d~~v~~w   84 (342)
T d1yfqa_          75 GTVQGEILKV   84 (342)
T ss_dssp             EETTSCEEEE
T ss_pred             cccccceeee
Confidence            9999999987

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=5.8e-06  Score=57.49  Aligned_cols=70  Identities=13%  Similarity=0.242  Sum_probs=54.3

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc----eeEEEEecccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ----PELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQ   96 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~----l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~   96 (98)
                      ...|..++|=|.. ++++.|+    .|.|+||+++.++    +......++..++.|..|-..   .+.||+|+.||.|.
T Consensus        51 ~~~V~~v~fs~~g-~~latg~----dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d---g~~l~s~~~dg~i~  122 (337)
T d1gxra_          51 GEVVCAVTISNPT-RHVYTGG----KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD---GCTLIVGGEASTLS  122 (337)
T ss_dssp             SSCCCEEEECSSS-SEEEEEC----BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT---SSEEEEEESSSEEE
T ss_pred             CCcEEEEEECCCC-CEEEEEE----CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCC---CCEEEEeecccccc
Confidence            4668899999977 5666673    6789999997653    344444567889999999443   57899999999999


Q ss_pred             eC
Q psy9278          97 IW   98 (98)
Q Consensus        97 iw   98 (98)
                      ||
T Consensus       123 iw  124 (337)
T d1gxra_         123 IW  124 (337)
T ss_dssp             EE
T ss_pred             cc
Confidence            98

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.2e-05  Score=55.73  Aligned_cols=69  Identities=13%  Similarity=0.326  Sum_probs=55.5

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ...+..+.|-|....|++.|    ..|.|.||++..++.  +...++..++.|..|-.   ..++||||+.||.+.||
T Consensus       265 ~~~i~~v~~s~~g~~l~s~s----~Dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~s~---d~~~l~t~s~D~~I~vW  333 (337)
T d1gxra_         265 ESCVLSLKFAYCGKWFVSTG----KDNLLNAWRTPYGAS--IFQSKESSSVLSCDISV---DDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCCE--EEEEECSSCEEEEEECT---TSCEEEEEETTSCEEEE
T ss_pred             ccccceEEECCCCCEEEEEe----CCCeEEEEECCCCCE--EEEccCCCCEEEEEEeC---CCCEEEEEeCCCeEEEE
Confidence            45688999999887776655    468999999988864  34566778899998843   35799999999999998

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=1.6e-05  Score=51.36  Aligned_cols=69  Identities=12%  Similarity=0.312  Sum_probs=53.7

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ...+.++.|-|....+++.|    ..|.|.||+++.+++  +.+++ +..++-|..|-..   .+.||||+.||.|.||
T Consensus       247 ~~~v~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~--~~~~~~h~~~V~~~~~s~~---~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         247 DNWVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKRC--MKTLNAHEHFVTSLDFHKT---APYVVTGSVDQTVKVW  316 (317)
T ss_dssp             SSCEEEEEECSSSSCEEEEE----TTTEEEEECCTTSCC--CEEEECCSSCEEEEEECSS---SSCEEEEETTSEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEE----CCCeEEEEECCCCcE--EEEEcCCCCCEEEEEEcCC---CCEEEEEeCCCeEEEe
Confidence            34577889999887666655    578999999988764  33443 5778999999443   4689999999999999

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.00  E-value=2.2e-05  Score=51.99  Aligned_cols=72  Identities=13%  Similarity=0.286  Sum_probs=54.1

Q ss_pred             hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278          18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQ   96 (98)
Q Consensus        18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~   96 (98)
                      ......+..+.|-|... +++.|.   ..|.|.||++..+++  +..++ +..++.|..|-..   .+.||||+.||.+.
T Consensus       267 ~~~~~~i~~~~~s~~~~-~l~~g~---~dg~i~iwd~~~~~~--~~~~~~H~~~V~~l~~s~d---~~~l~s~s~Dg~v~  337 (340)
T d1tbga_         267 DNIICGITSVSFSKSGR-LLLAGY---DDFNCNVWDALKADR--AGVLAGHDNRVSCLGVTDD---GMAVATGSWDSFLK  337 (340)
T ss_dssp             TTCCSCEEEEEECSSSC-EEEEEE---TTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTT---SSCEEEEETTSCEE
T ss_pred             ccccCceEEEEECCCCC-EEEEEE---CCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEeCC---CCEEEEEccCCEEE
Confidence            34445677888988765 455553   468999999987764  45555 6788999999443   46899999999999


Q ss_pred             eC
Q psy9278          97 IW   98 (98)
Q Consensus        97 iw   98 (98)
                      ||
T Consensus       338 iW  339 (340)
T d1tbga_         338 IW  339 (340)
T ss_dssp             EE
T ss_pred             Ee
Confidence            99

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.95  E-value=2.1e-05  Score=55.63  Aligned_cols=68  Identities=10%  Similarity=0.181  Sum_probs=55.3

Q ss_pred             eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      +..+.|=|... ++++|.   ..|.|.||+++.++++.+.+++ +..+|.|..|-..   .+.||+|+.||.+.||
T Consensus        10 It~~~~s~dg~-~la~~~---~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~---~~~l~s~s~D~~i~vW   78 (371)
T d1k8kc_          10 ISCHAWNKDRT-QIAICP---NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD---SNRIVTCGTDRNAYVW   78 (371)
T ss_dssp             CCEEEECTTSS-EEEEEC---SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT---TTEEEEEETTSCEEEE
T ss_pred             eEEEEECCCCC-EEEEEe---CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCC---CCEEEEEECCCeEEEE
Confidence            46778888765 455552   4689999999999999999876 7889999999543   4689999999999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.94  E-value=2.3e-05  Score=52.28  Aligned_cols=84  Identities=13%  Similarity=0.232  Sum_probs=61.6

Q ss_pred             ceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCC-------CCCC
Q psy9278          11 QIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNAS-------PLSE   83 (98)
Q Consensus        11 QIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaS-------sl~~   83 (98)
                      +...++.....-.+.++.|=|....++ .|.   ..|.|.||++..++.....-..+..++.|..|-..       ....
T Consensus       152 ~~~~~~~~~~~~~v~~~~~s~~~~~l~-~g~---~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~  227 (287)
T d1pgua2         152 EVSFDLKTPLRAKPSYISISPSETYIA-AGD---VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE  227 (287)
T ss_dssp             EEEEECSSCCSSCEEEEEECTTSSEEE-EEE---TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSC
T ss_pred             ceeeeeeeccCCceeEEEeccCccccc-ccc---ccccccceeecccccccccccccccccceeeecccccccccccCCC
Confidence            334444445556688899999876555 442   56899999999888765554557788999988443       2346


Q ss_pred             ceEEEeecCceEEeC
Q psy9278          84 RYLATGDFEGKLQIW   98 (98)
Q Consensus        84 r~lAtGdf~G~L~iw   98 (98)
                      .+||+|+.||++.||
T Consensus       228 ~~l~sgs~D~~i~iw  242 (287)
T d1pgua2         228 DLVATGSLDTNIFIY  242 (287)
T ss_dssp             CEEEEEETTSCEEEE
T ss_pred             CeeEeecCCCeEEEE
Confidence            789999999999998

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.73  E-value=8.4e-05  Score=52.08  Aligned_cols=72  Identities=19%  Similarity=0.324  Sum_probs=55.0

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec------ccCceeeeecCCCCCCCceEEEeecCc
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE------KPNAFKCGTFNASPLSERYLATGDFEG   93 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e------~~~~~KC~TFgaSsl~~r~lAtGdf~G   93 (98)
                      ....+..+.|-|....+++.|    ..|.+.+|++..++....-+..      +..++.|..|-..   .++||||+.||
T Consensus       188 ~~~~i~~v~~~p~~~~l~~~~----~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~---~~~l~tgs~Dg  260 (311)
T d1nr0a1         188 HTKFVHSVRYNPDGSLFASTG----GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD---GTKIASASADK  260 (311)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT---SSEEEEEETTS
T ss_pred             ccccccccccCcccccccccc----ccccccccccccccccccccccccccccccccccccccCCC---CCEEEEEeCCC
Confidence            356688999999887777655    5799999999887644333322      3567999999543   47999999999


Q ss_pred             eEEeC
Q psy9278          94 KLQIW   98 (98)
Q Consensus        94 ~L~iw   98 (98)
                      .|.||
T Consensus       261 ~v~iw  265 (311)
T d1nr0a1         261 TIKIW  265 (311)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            99998

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.73  E-value=0.0001  Score=51.88  Aligned_cols=72  Identities=15%  Similarity=0.253  Sum_probs=58.3

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..-.+.++.|-|....+++.|    ..|.|.||+++.++.+.+..+. +..++.|..|-..   .+.||+|+-||.+.+|
T Consensus        50 H~~~V~~l~fsp~~~~l~s~s----~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~---~~~l~~~s~d~~i~i~  122 (371)
T d1k8kc_          50 HNGQVTGVDWAPDSNRIVTCG----TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN---EKKFAVGSGSRVISIC  122 (371)
T ss_dssp             CSSCEEEEEEETTTTEEEEEE----TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT---SSEEEEEETTSSEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEE----CCCeEEEEeecccccccccccccccccccccccccc---cccceeecccCcceee
Confidence            345789999999987666655    3689999999999887776654 5678999999554   5799999999999987

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.64  E-value=0.00023  Score=47.33  Aligned_cols=72  Identities=15%  Similarity=0.237  Sum_probs=56.5

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..+.+-.+.|-|....++ +|.   ..|.|.+|+++.+++..+....++.++.|..|-..   .+.||+|+.+|.+.+|
T Consensus       135 ~~~~~~~~~~s~~~~~l~-~g~---~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~~~  206 (299)
T d1nr0a2         135 ISYNSSCVALSNDKQFVA-VGG---QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN---GAFLVATDQSRKVIPY  206 (299)
T ss_dssp             CSSCEEEEEECTTSCEEE-EEE---TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred             cccccccccccccccccc-ccc---ccccccccccccccccccccccccccccccccccc---cccccccccccccccc
Confidence            345555566767655444 442   46899999999999988888889999999999653   4689999999999987

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.62  E-value=0.00017  Score=51.19  Aligned_cols=74  Identities=20%  Similarity=0.383  Sum_probs=56.9

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE------------ecccCceeeeecCCCCCCCceEEE
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT------------VEKPNAFKCGTFNASPLSERYLAT   88 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e------------~e~~~~~KC~TFgaSsl~~r~lAt   88 (98)
                      .-.+..+.|=|.. ++++.|+..+..|.|.||+++.++..-.-+            ..+...+-|..|-.   ..+.||+
T Consensus       231 ~~~V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp---d~~~l~S  306 (393)
T d1sq9a_         231 SNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND---SGETLCS  306 (393)
T ss_dssp             CCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS---SSSEEEE
T ss_pred             cceEEEccccccc-ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC---CCCeeEE
Confidence            4567888999965 667788777778999999998875433221            13667788998854   3579999


Q ss_pred             eecCceEEeC
Q psy9278          89 GDFEGKLQIW   98 (98)
Q Consensus        89 Gdf~G~L~iw   98 (98)
                      |+.||.+.||
T Consensus       307 ~s~D~~v~vW  316 (393)
T d1sq9a_         307 AGWDGKLRFW  316 (393)
T ss_dssp             EETTSEEEEE
T ss_pred             ECCCCEEEEE
Confidence            9999999999

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=5.5e-05  Score=52.73  Aligned_cols=72  Identities=21%  Similarity=0.360  Sum_probs=54.8

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      -.++.+.|-|.+.++++.|.   ..|.|.||+++.+++  ++.++ +..++++..|..+....+.||+|+.||.+.||
T Consensus       206 ~~v~~v~~~pd~~~~l~s~~---~d~~i~iwd~~~~~~--~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iw  278 (325)
T d1pgua1         206 SFVRDVEFSPDSGEFVITVG---SDRKISCFDGKSGEF--LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW  278 (325)
T ss_dssp             CCEEEEEECSTTCCEEEEEE---TTCCEEEEETTTCCE--EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEE
T ss_pred             CccEEeeeccccceeccccc---cccceeeeeeccccc--cccccccccccccceeeeeccCCCEEEEEeCCCeEEEE
Confidence            34788999999888887764   468899999987764  34444 55567777776443446789999999999998

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.53  E-value=0.00023  Score=48.63  Aligned_cols=70  Identities=19%  Similarity=0.343  Sum_probs=51.9

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE-----------------ecccCceeeeecCCCCCCC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT-----------------VEKPNAFKCGTFNASPLSE   83 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e-----------------~e~~~~~KC~TFgaSsl~~   83 (98)
                      .-.|..++|=|+. ++++.|+    .|.|+||+++.+++...-.                 ..+...+.|..|-..   .
T Consensus        62 ~~~V~~l~fs~dg-~~lasg~----d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~---~  133 (388)
T d1erja_          62 TSVVCCVKFSNDG-EYLATGC----NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD---G  133 (388)
T ss_dssp             SSCCCEEEECTTS-SEEEEEC----BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT---S
T ss_pred             CCcEEEEEECCCC-CEEEEEe----CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC---C
Confidence            4568899999976 5777784    5789999998886543221                 124556888888443   5


Q ss_pred             ceEEEeecCceEEeC
Q psy9278          84 RYLATGDFEGKLQIW   98 (98)
Q Consensus        84 r~lAtGdf~G~L~iw   98 (98)
                      +.||+|+.||.+.+|
T Consensus       134 ~~l~s~~~dg~v~i~  148 (388)
T d1erja_         134 KFLATGAEDRLIRIW  148 (388)
T ss_dssp             SEEEEEETTSCEEEE
T ss_pred             Ccceecccccccccc
Confidence            789999999999987

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.51  E-value=0.0004  Score=45.69  Aligned_cols=70  Identities=11%  Similarity=0.272  Sum_probs=54.7

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..-.|+++.|-|....+++-|    ..|.|.||+++.++..  ..++ +..++.|..|-.+   ...||+|+.|+.+.+|
T Consensus        54 H~~~I~~l~~s~~~~~l~sgs----~Dg~v~iWd~~~~~~~--~~~~~~~~~v~~v~~~~~---~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          54 HLAKIYAMHWGTDSRLLVSAS----QDGKLIIWDSYTTNKV--HAIPLRSSWVMTCAYAPS---GNYVACGGLDNICSIY  124 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE----TTTEEEEEETTTTEEE--EEEECSCSCEEEEEECTT---SSEEEEEETTCCEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEE----CCCceeeeecccceeE--EEEecccccEEeeEeecc---ceeeeeecccceeecc
Confidence            456789999999877666554    5799999999888653  3444 6788999999544   5789999999998876

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=0.00033  Score=47.82  Aligned_cols=71  Identities=15%  Similarity=0.252  Sum_probs=51.3

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCC---CCCCCceEEEeecCceEEe
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNA---SPLSERYLATGDFEGKLQI   97 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFga---Ssl~~r~lAtGdf~G~L~i   97 (98)
                      ..+..+.|-|... +++.|+   ..|.|.||++..+++  +.+++ +..++.|..+-.   -+.....||||+-||.+.|
T Consensus       309 ~~v~~~~~s~~~~-~l~sg~---~dg~i~vwd~~~~~~--~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~i  382 (388)
T d1erja_         309 DFVLSVATTQNDE-YILSGS---KDRGVLFWDKKSGNP--LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI  382 (388)
T ss_dssp             SCEEEEEECGGGC-EEEEEE---TTSEEEEEETTTCCE--EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred             ceEEEEEECCCCC-EEEEEe---CCCEEEEEECCCCcE--EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEE
Confidence            4567888999764 555553   468999999988764  44444 567777776522   2334678999999999999


Q ss_pred             C
Q psy9278          98 W   98 (98)
Q Consensus        98 w   98 (98)
                      |
T Consensus       383 W  383 (388)
T d1erja_         383 W  383 (388)
T ss_dssp             E
T ss_pred             E
Confidence            9

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=9.1e-05  Score=51.58  Aligned_cols=76  Identities=14%  Similarity=0.328  Sum_probs=46.6

Q ss_pred             hhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278          17 EKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQ   96 (98)
Q Consensus        17 ~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~   96 (98)
                      +..+.-.+|.+.| |.+..|++.|    ..|.|+||+++.+++...-..+. +.+-|...+.+...+..|++|+.||.|.
T Consensus       248 ~~~v~~~~~s~~~-~dg~~l~s~s----~D~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~dg~i~  321 (325)
T d1pgua1         248 QEPVQGGIFALSW-LDSQKFATVG----ADATIRVWDVTTSKCVQKWTLDK-QQLGNQQVGVVATGNGRIISLSLDGTLN  321 (325)
T ss_dssp             TBCCCSCEEEEEE-SSSSEEEEEE----TTSEEEEEETTTTEEEEEEECCT-TCGGGCEEEEEEEETTEEEEEETTSCEE
T ss_pred             ccccccceeeeec-cCCCEEEEEe----CCCeEEEEECCCCCEEEEEEecC-CcccCeEEEEEECCCCEEEEEECCCEEE
Confidence            3445555677777 4555666554    56889999999886543333332 2222211111112356899999999999


Q ss_pred             eC
Q psy9278          97 IW   98 (98)
Q Consensus        97 iw   98 (98)
                      ||
T Consensus       322 vw  323 (325)
T d1pgua1         322 FY  323 (325)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=7.5e-05  Score=49.09  Aligned_cols=67  Identities=13%  Similarity=0.210  Sum_probs=50.8

Q ss_pred             eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      +..+.+.|..-++++.|+    .|.|+||+++.|++-......+..++-|..|  +  +++.+|+|+.||++.||
T Consensus       284 ~~~~~~~~~~~~~l~~g~----d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~--~--~~~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         284 LSAITTFYVSDNILVSGS----ENQFNIYNLRSGKLVHANILKDADQIWSVNF--K--GKTLVAAVEKDGQSFLE  350 (355)
T ss_dssp             CCCCCEEEECSSEEEEEE----TTEEEEEETTTCCBCCSCTTTTCSEEEEEEE--E--TTEEEEEEESSSCEEEE
T ss_pred             ceEEEEEcCCCCEEEEEe----CCEEEEEECCCCCEEEEEecCCCCCEEEEEE--c--CCeEEEEEECCCcEEEE
Confidence            345668888889999884    5789999999988643333346678889888  2  35789999999997776

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00034  Score=44.51  Aligned_cols=57  Identities=19%  Similarity=0.436  Sum_probs=43.7

Q ss_pred             cCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          31 PCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        31 P~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      |. .++++.|+   ..|.|+||+++.+++  ++.++ +..++.|..|-     .+.||+|+.||.+.+|
T Consensus        23 ~d-~~~l~sgs---~Dg~i~vWd~~~~~~--~~~l~~H~~~V~~v~~~-----~~~l~s~s~D~~i~~~   80 (293)
T d1p22a2          23 YD-DQKIVSGL---RDNTIKIWDKNTLEC--KRILTGHTGSVLCLQYD-----ERVIITGSSDSTVRVW   80 (293)
T ss_dssp             CC-SSEEEEEE---SSSCEEEEESSSCCE--EEEECCCSSCEEEEECC-----SSEEEEEETTSCEEEE
T ss_pred             Ec-CCEEEEEe---CCCeEEEEECCCCcE--EEEEecCCCCEeeeecc-----cceeeccccccccccc
Confidence            44 45566663   479999999987764  44444 78899999882     4689999999999987

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=0.00026  Score=46.41  Aligned_cols=56  Identities=11%  Similarity=0.332  Sum_probs=44.4

Q ss_pred             ccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          34 AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        34 ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      -++++.|+   ..|.|+||++..+++  +.+++ +..++.|..|-.    ...||+|+.||.+.+|
T Consensus        23 ~~~l~tgs---~Dg~i~vWd~~~~~~--~~~l~~H~~~V~~l~~s~----~~~l~s~s~D~~i~iw   79 (355)
T d1nexb2          23 DNYVITGA---DDKMIRVYDSINKKF--LLQLSGHDGGVWALKYAH----GGILVSGSTDRTVRVW   79 (355)
T ss_dssp             TTEEEEEE---TTTEEEEEETTTTEE--EEEEECCSSCEEEEEEET----TTEEEEEETTCCEEEE
T ss_pred             CCEEEEEe---CCCeEEEEECCCCcE--EEEEECCCCCEEEEEEcC----CCEEEEEecccccccc
Confidence            46777774   468999999987754  45555 788999999932    3589999999999987

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.21  E-value=0.00053  Score=47.84  Aligned_cols=69  Identities=13%  Similarity=0.147  Sum_probs=47.5

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCc--eeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNA--FKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~--~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      +-.+..+.|-|.+..+++ |+   ..|.|+||+++.+++  +++++....  ..+..+-.+   ...|++|+.||.|.+|
T Consensus       238 ~~~V~~~~~s~~~~~l~t-gs---~Dg~v~iwd~~t~~~--~~~l~~~~~~~~~~~~~~~~---~~~l~s~s~dG~i~~w  308 (311)
T d1nr0a1         238 SGSVFGLTWSPDGTKIAS-AS---ADKTIKIWNVATLKV--EKTIPVGTRIEDQQLGIIWT---KQALVSISANGFINFV  308 (311)
T ss_dssp             SSCEEEEEECTTSSEEEE-EE---TTSEEEEEETTTTEE--EEEEECCSSGGGCEEEEEEC---SSCEEEEETTCCEEEE
T ss_pred             cccccccccCCCCCEEEE-Ee---CCCeEEEEECCCCcE--EEEEECCCCccceEEEEEec---CCEEEEEECCCEEEEE
Confidence            346889999998865555 43   367899999988764  455543322  333334333   3579999999999998

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.17  E-value=0.00068  Score=44.96  Aligned_cols=75  Identities=12%  Similarity=0.071  Sum_probs=55.2

Q ss_pred             hhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceE
Q psy9278          16 VEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKL   95 (98)
Q Consensus        16 i~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L   95 (98)
                      +.+..+-.+..+.|=|....+ +.|+   ..|.|.||+++.++......-.+..++.|..|-..    -.++++..||.+
T Consensus         7 ~~~GH~~~V~~l~~s~dg~~l-~s~s---~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~----g~~~~~~~d~~v   78 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGKTL-FSAD---AEGHINSWDISTGISNRVFPDVHATMITGIKTTSK----GDLFTVSWDDHL   78 (299)
T ss_dssp             EECCCSSCEEEEEECTTSSEE-EEEE---TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT----SCEEEEETTTEE
T ss_pred             EcCCCCCCcEEEEECCCCCEE-EEEc---CCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc----ceeecccceeeE
Confidence            344556678899999976544 4443   46899999999887665544457788999999654    247777889999


Q ss_pred             EeC
Q psy9278          96 QIW   98 (98)
Q Consensus        96 ~iw   98 (98)
                      .+|
T Consensus        79 ~~~   81 (299)
T d1nr0a2          79 KVV   81 (299)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            887

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.002  Score=42.50  Aligned_cols=70  Identities=10%  Similarity=0.239  Sum_probs=49.0

Q ss_pred             cceeeeeeecCC---------ccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecC
Q psy9278          22 YQLFDCKWMPCS---------AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFE   92 (98)
Q Consensus        22 yT~fD~kWIP~S---------ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~   92 (98)
                      -.+..+.|=|..         .++++.|+   ..|.|.||+++.+.-.+.....+..++.|..|-.    +..|+|++.|
T Consensus       206 ~~v~~~~~~p~~~~~~~~~~~~~~l~sgs---~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~----~~~l~s~g~D  278 (287)
T d1pgua2         206 SKINAISWKPAEKGANEEEIEEDLVATGS---LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET----PSTLVSSGAD  278 (287)
T ss_dssp             SCEEEEEECCCC------CCSCCEEEEEE---TTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE----TTEEEEEETT
T ss_pred             cccceeeecccccccccccCCCCeeEeec---CCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC----CCEEEEEECC
Confidence            345667777654         34555554   3578999999875433333334788999998853    3469999999


Q ss_pred             ceEEeC
Q psy9278          93 GKLQIW   98 (98)
Q Consensus        93 G~L~iw   98 (98)
                      |.+.||
T Consensus       279 ~~v~iW  284 (287)
T d1pgua2         279 ACIKRW  284 (287)
T ss_dssp             SCEEEE
T ss_pred             CeEEEE
Confidence            999999

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.79  E-value=0.0025  Score=42.38  Aligned_cols=71  Identities=7%  Similarity=0.079  Sum_probs=56.7

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ...+.++.|-|...++++.|...  -..|.||.++.++++.+.  +.+..+.+..|-+.   .++||++.-++.+.+|
T Consensus        42 ~~~v~~~~~spDg~~l~~~~~~~--g~~v~v~d~~~~~~~~~~--~~~~~v~~~~~spd---g~~l~~~~~~~~~~~~  112 (360)
T d1k32a3          42 PLRIRYVRRGGDTKVAFIHGTRE--GDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRN---GKFAVVANDRFEIMTV  112 (360)
T ss_dssp             CSCEEEEEECSSSEEEEEEEETT--EEEEEEEETTTCCEEECC--CCCCSEEEEEECTT---SSEEEEEETTSEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEEcCC--CCEEEEEECCCCcEEEee--CCCceEEeeeeccc---ccccceeccccccccc
Confidence            56789999999998888877532  246999999999887654  46777889988443   5799999999999887

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0054  Score=39.59  Aligned_cols=66  Identities=14%  Similarity=0.252  Sum_probs=44.8

Q ss_pred             eeeecCCccEEEEccccCCcccEEEEEecCCcee-EEEEec---ccCceeeeecCCCCCCCceEEEeecCce----EEeC
Q psy9278          27 CKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPE-LVKTVE---KPNAFKCGTFNASPLSERYLATGDFEGK----LQIW   98 (98)
Q Consensus        27 ~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~-~~~e~e---~~~~~KC~TFgaSsl~~r~lAtGdf~G~----L~iw   98 (98)
                      +.+++-+.++++.|+   ..|.|+||+++.+++- .+...+   +...+-|..|-..   .+.||+|+-||.    |.+|
T Consensus       263 ~~~~~~~~~~~~s~s---~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~---~~~la~g~~dGt~~~~l~~~  336 (342)
T d2ovrb2         263 VTCLQFNKNFVITSS---DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT---KLVCAVGSRNGTEETKLLVL  336 (342)
T ss_dssp             EEEEEECSSEEEEEE---TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS---EEEEEEECSSSSSCCEEEEE
T ss_pred             eeecccCCCeeEEEc---CCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC---CCEEEEEeCCCCCeeEEEEE
Confidence            334444567777775   4689999999888642 222222   3346888888543   578999999995    7776

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.61  E-value=0.01  Score=37.63  Aligned_cols=70  Identities=16%  Similarity=0.241  Sum_probs=53.4

Q ss_pred             CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ...+....|-|....+++.+    ..|.+.+|+++.++....-+ .+...+.|..|-..   ...||+|+.||.+.+|
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~l~~~~~d~~v~~~  170 (317)
T d1vyhc1         101 DHNVSSVSIMPNGDHIVSAS----RDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQD---GTLIASCSNDQTVRVW  170 (317)
T ss_dssp             SSCEEEEEECSSSSEEEEEE----TTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred             cccceeeeccCCCceEEeec----cCcceeEeecccceeeeEEc-cCCCcceeeecccC---CCEEEEEeCCCeEEEE
Confidence            45567788999888887766    67899999998886433222 25677888888543   5689999999999887

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.0016  Score=41.23  Aligned_cols=61  Identities=20%  Similarity=0.343  Sum_probs=41.3

Q ss_pred             ecCCccEEEEccccCCcccEEEEEecCCc-------eeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          30 MPCSAKFIVLGMKPKGTGSIQMYEINDGQ-------PELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        30 IP~SArfV~lG~~prgtG~iqIyeL~~~~-------l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ++...++++.|.   ..|.|.||++..+.       ...+..+ .+..++-|..|-     .+.||||+.||.+.||
T Consensus       224 ~~~~~~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d-----~~~l~s~s~Dg~i~iW  292 (293)
T d1p22a2         224 IRFDNKRIVSGA---YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-----EFQIVSSSHDDTILIW  292 (293)
T ss_dssp             EECCSSEEEEEE---TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC-----SSCEEECCSSSEEEEE
T ss_pred             ccccceEEEEEc---CCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc-----CCEEEEEecCCEEEEe
Confidence            334445555554   46899999985432       2233433 366778788772     3579999999999999

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.48  E-value=0.0057  Score=39.18  Aligned_cols=73  Identities=15%  Similarity=0.245  Sum_probs=52.4

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..-.+.++.|.|.+.++++.|.   ..|.+.+|.+..+..............-+..+.   .....+++++.++.+.+|
T Consensus        55 h~~~V~~v~f~~~~~~~l~sg~---~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~w  127 (342)
T d1yfqa_          55 YKHPLLCCNFIDNTDLQIYVGT---VQGEILKVDLIGSPSFQALTNNEANLGICRICK---YGDDKLIAASWDGLIEVI  127 (342)
T ss_dssp             CSSCEEEEEEEESSSEEEEEEE---TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEE---ETTTEEEEEETTSEEEEE
T ss_pred             CCCCEEEEEEeCCCCCEEEEcc---cccceeeeecccccccccccccccccccccccc---ccccccccccccccccee
Confidence            3456899999999888888774   468999999988876665544433333332222   225689999999999987

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.26  E-value=0.01  Score=41.62  Aligned_cols=67  Identities=15%  Similarity=0.254  Sum_probs=48.1

Q ss_pred             eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-----cccCceeeeecCCCCCCCceEEEeecCce---E
Q psy9278          24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-----EKPNAFKCGTFNASPLSERYLATGDFEGK---L   95 (98)
Q Consensus        24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-----e~~~~~KC~TFgaSsl~~r~lAtGdf~G~---L   95 (98)
                      +..+.|-|..  +++.|+   ..|.|+||+++.++....-+.     .+..++.|..|-.   ..+.||+|..|+.   +
T Consensus       187 ~~~v~~s~dg--~lasgs---~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp---dg~~l~sgs~D~t~~~i  258 (393)
T d1sq9a_         187 ATSVDISERG--LIATGF---NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP---QGSLLAIAHDSNSFGCI  258 (393)
T ss_dssp             CCEEEECTTS--EEEEEC---TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS---STTEEEEEEEETTEEEE
T ss_pred             EEEEEECCCC--EEEEEe---CCCcEEEEeecccccccccccccccccccceEEEccccc---ccceeeeecCCCCccee
Confidence            5567777875  666664   478999999998865433322     2578899999954   3579999998874   6


Q ss_pred             EeC
Q psy9278          96 QIW   98 (98)
Q Consensus        96 ~iw   98 (98)
                      .||
T Consensus       259 ~lw  261 (393)
T d1sq9a_         259 TLY  261 (393)
T ss_dssp             EEE
T ss_pred             eec
Confidence            665

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=95.86  E-value=0.026  Score=36.78  Aligned_cols=69  Identities=17%  Similarity=0.268  Sum_probs=48.7

Q ss_pred             CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ....++.+.+-|.-..++..+     .+.+.+|++..++  ++..++..+.+.+..|-+   ..+.|++|+.+|.+.||
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~-----~~~v~v~d~~~~~--~~~~~~~~~~~~~va~s~---DG~~l~v~~~d~~v~v~  318 (346)
T d1jmxb_         250 LTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRK--LIKAANLDHTYYCVAFDK---KGDKLYLGGTFNDLAVF  318 (346)
T ss_dssp             CSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTE--EEEEEECSSCCCEEEECS---SSSCEEEESBSSEEEEE
T ss_pred             ccceeEEEEEeCCCCEEEEec-----CCeEEEEECCCCc--EEEEEcCCCCEEEEEEcC---CCCEEEEEeCCCcEEEE
Confidence            344556666666665544332     4678899887765  456666677888999943   35789999999999998

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.016  Score=37.20  Aligned_cols=56  Identities=21%  Similarity=0.509  Sum_probs=40.1

Q ss_pred             cEEEEccccCCcccEEEEEecCCceeEEEEec--ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          35 KFIVLGMKPKGTGSIQMYEINDGQPELVKTVE--KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        35 rfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e--~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ++++.|+   ..|.|+||++...+....-+..  +...+.|..|-     .+.||+|+-||.|.||
T Consensus       228 ~~l~s~s---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~s~Dg~i~iw  285 (342)
T d2ovrb2         228 NILVSGN---ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-----KNFVITSSDDGTVKLW  285 (342)
T ss_dssp             TEEEEEE---TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-----SSEEEEEETTSEEEEE
T ss_pred             CEEEEEc---CCCEEEEEecccccccccccccceeeeceeecccC-----CCeeEEEcCCCEEEEE
Confidence            3555553   4689999999888755444333  45566777663     3589999999999998

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.07  E-value=0.08  Score=34.21  Aligned_cols=48  Identities=13%  Similarity=0.295  Sum_probs=38.0

Q ss_pred             cccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          46 TGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        46 tG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+.|.+|++..+++  +..++.+..+.|.+|-+.   .+.|++|+-+|+|.||
T Consensus       259 ~~~i~v~d~~~~~~--~~~~~~~~~~~~~~~s~d---G~~l~v~~~~~~i~v~  306 (337)
T d1pbyb_         259 YNVLESFDLEKNAS--IKRVPLPHSYYSVNVSTD---GSTVWLGGALGDLAAY  306 (337)
T ss_dssp             ESEEEEEETTTTEE--EEEEECSSCCCEEEECTT---SCEEEEESBSSEEEEE
T ss_pred             cccEEEEECCCCcE--EEEEcCCCCEEEEEECCC---CCEEEEEeCCCcEEEE
Confidence            47899999887754  455667788889998554   4689999999999997

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=94.96  E-value=0.033  Score=36.51  Aligned_cols=52  Identities=21%  Similarity=0.383  Sum_probs=40.7

Q ss_pred             CCcccEEEEEec-CCceeEEEEecccCceeeeecCCCCCCCceEEEeec-CceEEeC
Q psy9278          44 KGTGSIQMYEIN-DGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDF-EGKLQIW   98 (98)
Q Consensus        44 rgtG~iqIyeL~-~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf-~G~L~iw   98 (98)
                      ...+.|+||+|+ .+.+++++.++.+..+....|-+.   .++|++++. +|.+.+|
T Consensus        11 ~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spD---G~~L~v~~~~d~~i~~~   64 (333)
T d1ri6a_          11 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD---KRYLYVGVRPEFRVLAY   64 (333)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT---SSEEEEEETTTTEEEEE
T ss_pred             CCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCC---CCEEEEEECCCCeEEEE
Confidence            356899999996 557999999999999999988443   467765555 7888876

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.48  E-value=0.099  Score=38.09  Aligned_cols=82  Identities=12%  Similarity=0.180  Sum_probs=56.8

Q ss_pred             ceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCC--CCCCCceEEE
Q psy9278          11 QIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNA--SPLSERYLAT   88 (98)
Q Consensus        11 QIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFga--Ssl~~r~lAt   88 (98)
                      +++..+.-  -+.|+++.+=|.--++++.+    ..|.+.||+++.++.+.+.++..-..-.-..|..  |.-.++-+|+
T Consensus        53 ~v~~~~~~--g~~~~~v~fSpDG~~l~~~s----~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs  126 (432)
T d1qksa2          53 EIKTVLDT--GYAVHISRLSASGRYLFVIG----RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAG  126 (432)
T ss_dssp             CEEEEEEC--SSCEEEEEECTTSCEEEEEE----TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEE
T ss_pred             cEEEEEeC--CCCeeEEEECCCCCEEEEEc----CCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEE
Confidence            45555543  35699999999887776544    2589999999999998888887543333333332  2233444688


Q ss_pred             eecCceEEeC
Q psy9278          89 GDFEGKLQIW   98 (98)
Q Consensus        89 Gdf~G~L~iw   98 (98)
                      +..++.+.||
T Consensus       127 ~~~~~~v~i~  136 (432)
T d1qksa2         127 AYWPPQYVIM  136 (432)
T ss_dssp             EEETTEEEEE
T ss_pred             cCCCCeEEEE
Confidence            9999999987

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=94.45  E-value=0.042  Score=35.78  Aligned_cols=58  Identities=9%  Similarity=0.209  Sum_probs=38.4

Q ss_pred             ccEEEEccccCCcccEEEEEecCCceeEEEEecccC--ceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          34 AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPN--AFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        34 ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~--~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      .+++++|+.+   +.|+||++..+++  ++.++-+.  +..+.+|  |.-..+-++++..+|.+.+|
T Consensus         8 ~~~l~~~~~~---~~v~v~D~~t~~~--~~t~~~~~~~~p~~l~~--spDG~~l~v~~~~~~~v~~~   67 (346)
T d1jmxb_           8 HEYMIVTNYP---NNLHVVDVASDTV--YKSCVMPDKFGPGTAMM--APDNRTAYVLNNHYGDIYGI   67 (346)
T ss_dssp             CEEEEEEETT---TEEEEEETTTTEE--EEEEECSSCCSSCEEEE--CTTSSEEEEEETTTTEEEEE
T ss_pred             CcEEEEEcCC---CEEEEEECCCCCE--EEEEEcCCCCCcceEEE--CCCCCEEEEEECCCCcEEEE
Confidence            4678888665   5899999998855  55444333  3445555  33334445778889999887

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=94.42  E-value=0.18  Score=32.07  Aligned_cols=72  Identities=8%  Similarity=-0.035  Sum_probs=48.9

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ..+....|-|....+++.+ .-+..+.|.+|++..+++  +..++......+..|-+  -.++-++++..+|.|.||
T Consensus       200 ~~~~~~~~~~~g~~~~v~~-~~~~~~~v~v~D~~t~~~--~~~~~~~~~~~~va~sp--dg~~l~va~~~~~~i~v~  271 (301)
T d1l0qa2         200 AAPSGIAVNPEGTKAYVTN-VDKYFNTVSMIDTGTNKI--TARIPVGPDPAGIAVTP--DGKKVYVALSFCNTVSVI  271 (301)
T ss_dssp             SEEEEEEECTTSSEEEEEE-ECSSCCEEEEEETTTTEE--EEEEECCSSEEEEEECT--TSSEEEEEETTTTEEEEE
T ss_pred             CCcceeecccccccccccc-ccceeeeeeeeecCCCeE--EEEEcCCCCEEEEEEeC--CCCEEEEEECCCCeEEEE
Confidence            4466777888777665443 345567899998877764  45555555567777733  334445899999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.23  E-value=0.14  Score=33.45  Aligned_cols=66  Identities=17%  Similarity=0.213  Sum_probs=46.1

Q ss_pred             ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEE-eecCc-eEEeC
Q psy9278          23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLAT-GDFEG-KLQIW   98 (98)
Q Consensus        23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAt-Gdf~G-~L~iw   98 (98)
                      |.|...+=|.--+.|+.++    .|.|.||+++++.+..+   -++..+.|..|-...   +.||+ |+-+| .|.||
T Consensus         4 ~~~~~~fSP~dG~~~a~~~----~g~v~v~d~~~~~~~~~---~~~~~v~~~~~spDg---~~l~~~~~~~g~~v~v~   71 (360)
T d1k32a3           4 SKFAEDFSPLDGDLIAFVS----RGQAFIQDVSGTYVLKV---PEPLRIRYVRRGGDT---KVAFIHGTREGDFLGIY   71 (360)
T ss_dssp             GGGEEEEEECGGGCEEEEE----TTEEEEECTTSSBEEEC---SCCSCEEEEEECSSS---EEEEEEEETTEEEEEEE
T ss_pred             hhhcccccCCCCCEEEEEE----CCeEEEEECCCCcEEEc---cCCCCEEEEEECCCC---CEEEEEEcCCCCEEEEE
Confidence            5567778885555566653    47899999999887654   578899999995543   55654 55555 45665

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=93.17  E-value=0.21  Score=31.75  Aligned_cols=50  Identities=6%  Similarity=0.157  Sum_probs=34.1

Q ss_pred             CcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          45 GTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        45 gtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      +.|.|.||+++.++  ++++++........+|-..  ..+-++++..+|.+.+|
T Consensus        10 ~~~~v~v~D~~t~~--~~~~i~~g~~p~~va~spd--G~~l~v~~~~~~~i~v~   59 (301)
T d1l0qa2          10 ESDNISVIDVTSNK--VTATIPVGSNPMGAVISPD--GTKVYVANAHSNDVSII   59 (301)
T ss_dssp             TTTEEEEEETTTTE--EEEEEECSSSEEEEEECTT--SSEEEEEEGGGTEEEEE
T ss_pred             CCCEEEEEECCCCe--EEEEEECCCCceEEEEeCC--CCEEEEEECCCCEEEEE
Confidence            67789999998885  5566665444455566332  23334688889999987

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=92.09  E-value=0.6  Score=30.09  Aligned_cols=71  Identities=11%  Similarity=0.123  Sum_probs=47.2

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCC--ceeEEEEecccCceeeeecCCCCCCCceEEEeec-CceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDG--QPELVKTVEKPNAFKCGTFNASPLSERYLATGDF-EGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~--~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf-~G~L~iw   98 (98)
                      -.|.++.|=|.-..+.+.+   +..|.|++|+++.+  .++++.........-+..|-..   .++|+++++ ++.+.+|
T Consensus        37 ~~v~~la~spDG~~L~v~~---~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spD---g~~l~v~~~~~~~v~~~  110 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGV---RPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ---GQFVFVGSYNAGNVSVT  110 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEE---TTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTT---SSEEEEEETTTTEEEEE
T ss_pred             CCEeEEEEeCCCCEEEEEE---CCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCC---CCEEeecccCCCceeee
Confidence            4578889999977765555   46789999999755  4566666665555545555322   467888876 4455543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.96  E-value=0.19  Score=35.52  Aligned_cols=50  Identities=20%  Similarity=0.337  Sum_probs=37.4

Q ss_pred             CCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          44 KGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        44 rgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ++.|.|+||++..+++  +..++......-..|-+   .-|+||+++-||.+.+|
T Consensus        39 ~~dg~v~vwD~~t~~~--~~~l~~g~~~~~vafSP---DGk~l~~~~~d~~v~vw   88 (426)
T d1hzua2          39 RDAGQIALVDGDSKKI--VKVIDTGYAVHISRMSA---SGRYLLVIGRDARIDMI   88 (426)
T ss_dssp             TTTTEEEEEETTTCSE--EEEEECCSSEEEEEECT---TSCEEEEEETTSEEEEE
T ss_pred             cCCCEEEEEECCCCcE--EEEEeCCCCeeEEEECC---CCCEEEEEeCCCCEEEE
Confidence            4799999999987754  44555555566666732   35789999999999998

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.07  E-value=0.48  Score=30.32  Aligned_cols=57  Identities=9%  Similarity=-0.025  Sum_probs=35.0

Q ss_pred             cEEEEccccCCcccEEEEEecCCceeEEEEec---ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278          35 KFIVLGMKPKGTGSIQMYEINDGQPELVKTVE---KPNAFKCGTFNASPLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        35 rfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e---~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw   98 (98)
                      ++++.++.   .|.|.||.+..+++  ++++.   .....-...|-+  -+.+-+++|..+|.|.+|
T Consensus         2 ~~~vt~~~---d~~v~v~D~~s~~~--~~~i~~~~~~~~~~~i~~sp--Dg~~l~v~~~~~~~v~v~   61 (337)
T d1pbyb_           2 DYILAPAR---PDKLVVIDTEKMAV--DKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKI   61 (337)
T ss_dssp             EEEEEEET---TTEEEEEETTTTEE--EEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEE
T ss_pred             eEEEEEcC---CCEEEEEECCCCeE--EEEEECCCCCCCccEEEECC--CCCEEEEEECCCCeEEEE
Confidence            35666653   58999999988764  44443   222233444432  223334789999999987

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.72  E-value=1.8  Score=30.24  Aligned_cols=73  Identities=12%  Similarity=0.142  Sum_probs=48.6

Q ss_pred             cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCC--CCCCceEEEeecCceEEeC
Q psy9278          22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNAS--PLSERYLATGDFEGKLQIW   98 (98)
Q Consensus        22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaS--sl~~r~lAtGdf~G~L~iw   98 (98)
                      ..|+.+..=|.--++++-+    ..|.+++|+++.++...+.+++...+-.=..|...  .-.++-++++..++.+.+|
T Consensus        62 ~~~~~vafSPDGk~l~~~~----~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~  136 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIG----RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM  136 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEE----TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEE
T ss_pred             CCeeEEEECCCCCEEEEEe----CCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEE
Confidence            4688999999886665544    35799999999999888888765443322233222  2234445666688888776

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.66  E-value=1.8  Score=30.40  Aligned_cols=63  Identities=8%  Similarity=0.280  Sum_probs=42.0

Q ss_pred             hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec----ccCceeeeecCCCCCCCceEEEe
Q psy9278          18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE----KPNAFKCGTFNASPLSERYLATG   89 (98)
Q Consensus        18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e----~~~~~KC~TFgaSsl~~r~lAtG   89 (98)
                      -.+....|..+|+|.+. |+.     +..|.|.+|++..++.+.+-+.+    +..++.+-+|-+   ..+.||.+
T Consensus        13 ~~~~~~~~~~~W~~d~~-~~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp---Dg~~i~~~   79 (470)
T d2bgra1          13 NTYRLKLYSLRWISDHE-YLY-----KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP---DGQFILLE   79 (470)
T ss_dssp             TCSCCCCCCCEECSSSE-EEE-----ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT---TSSEEEEE
T ss_pred             CceeccccCCEeCCCCE-EEE-----EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC---CCCEEEEE
Confidence            34556678999999885 554     33577999999999876654433    235566766643   24567765

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=80.15  E-value=5.9  Score=25.91  Aligned_cols=69  Identities=10%  Similarity=0.052  Sum_probs=43.4

Q ss_pred             eeeeecCCccEEEEcccc------CCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCc-eEEEeecCceEEeC
Q psy9278          26 DCKWMPCSAKFIVLGMKP------KGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSER-YLATGDFEGKLQIW   98 (98)
Q Consensus        26 D~kWIP~SArfV~lG~~p------rgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r-~lAtGdf~G~L~iw   98 (98)
                      ...|-|...++++.+...      ...+.+.+|++..++.  +..++.....-...|-+  -.++ -+++++.+|.+.||
T Consensus       271 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~--~~~~~~~~~~~~~a~sp--DG~~~l~vt~~~d~~v~v~  346 (373)
T d2madh_         271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQISLGHDVDAISVAQ--DGGPDLYALSAGTEVLHIY  346 (373)
T ss_pred             eeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE--EEEecCCCCeeEEEECC--CCCEEEEEEeCCCCeEEEE
Confidence            345566666555443211      2246678888776654  45566666777777733  2344 46899999999998