Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 120
pfam03656 127
pfam03656, Pam16, Pam16
1e-28 PTZ00100 116
PTZ00100, PTZ00100, DnaJ chaperone protein; Provis
1e-04
>gnl|CDD|217661 pfam03656, Pam16, Pam16
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Score = 100 bits (250), Expect = 1e-28
Identities = 54/114 (47%), Positives = 77/114 (67%), Gaps = 4/114 (3%)
Query: 1 MAKYI-IQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLD 59
MA IQ+ + G QVVG+AFA+A RQE AA + AA G +++ G++LD
Sbjct: 1 MAHRAAIQVIITGTQVVGKAFARAYRQEAAAQRVAA--GAGTNASRRGTAKSNYGGISLD 58
Query: 60 EARDILDIKQ-LDPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVK 112
E+ IL++++ L+ +E+ +RYE LF ND SKGGSFY+QSKV RAKER+D+E+
Sbjct: 59 ESCQILNVEEDLNMEEVNKRYEHLFEVNDKSKGGSFYLQSKVYRAKERLDEELA 112
The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM). In Saccharomyces cerevisiae, Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane. Pam16 has a degenerate J domain. J-domain proteins play important regulatory roles as co-chaperones, recruiting Hsp70 partners and accelerating the ATP-hydrolysis step of the chaperone cycle. Pam16's J-like domain strongly interacts with Pam18's J domain, leading to a productive interaction of Pam18 with mtHsp70 at the mitochondria import channel. Pam18 stimulates the ATPase activity of mtHsp70. Length = 127
>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional
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Score = 38.7 bits (90), Expect = 1e-04
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 56 MTLDEARDILDIKQLDPKE-IKQRYEFLFNANDSSKGGSFYIQSKVVRAKERI 107
M+ EA IL+I KE I++ ++ L N GGS YI SKV AK+ +
Sbjct: 62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLL 114
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []
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Probab=100.00 E-value=1.5e-37 Score=225.28 Aligned_cols=114 Identities=53% Similarity=0.747 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCHHHHHHHcCCCCC-CHHHHHHHHH
Q psy9282 2 AKYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQL-DPKEIKQRYE 80 (120)
Q Consensus 2 ariia~l~v~g~~~~gra~~~A~rqa~~~~~~a~~~~~~~~~~~~~~~~~~~~~Ms~~EA~~ILgv~~~-~~~~Ik~~yr 80 (120)
.|||+||+|+|+++|||||++||||++.+++.++..... ++.........++||++||++||||++. ++++|.++|+
T Consensus 3 ~riiaqiiv~G~~vvgRAf~~AyrQA~aa~~~a~~a~~~--a~~~~~a~~~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~ 80 (127)
T PF03656_consen 3 KRIIAQIIVTGGQVVGRAFTQAYRQAAAAAQAAAGAGQN--ASARGAAASNSKGMTLDEARQILNVKEELSREEIQKRYK 80 (127)
T ss_dssp --------------------------------------------------------HHHHHHHHT--G--SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccchhHHhhcCCCCHHHHHHHcCCCCccCHHHHHHHHH
Confidence 467779999999999999999999999765543332111 1112222334458999999999999995 7899999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhCC
Q psy9282 81 FLFNANDSSKGGSFYIQSKVVRAKERIDQEVKKVSGD 117 (120)
Q Consensus 81 ~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~~~~~~ 117 (120)
+||..|||++||||||||||++|+|||+.|++....+
T Consensus 81 ~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El~~~~~~ 117 (127)
T PF03656_consen 81 HLFKANDPSKGGSFYLQSKVFRAKERLEQELKEEEKE 117 (127)
T ss_dssp HHHHHT-CCCTS-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHhccCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999876543
In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
>KOG3442|consensus
Back Show alignment and domain information
Probab=100.00 E-value=4.2e-36 Score=216.23 Aligned_cols=112 Identities=57% Similarity=0.878 Sum_probs=100.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCHHHHHHHcCCCCC-CHHHHHHHH
Q psy9282 1 MAKYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQL-DPKEIKQRY 79 (120)
Q Consensus 1 ~ariia~l~v~g~~~~gra~~~A~rqa~~~~~~a~~~~~~~~~~~~~~~~~~~~~Ms~~EA~~ILgv~~~-~~~~Ik~~y 79 (120)
|+|++++|||+|++++||||++||||++++++.++...+.+..|+.........+||++||++||||++. ++++|.++|
T Consensus 1 ~~R~~aqiIi~G~qvvgrAf~~A~RQeia~s~~aa~~~~a~k~g~~~~~~~~~~~iTlqEa~qILnV~~~ln~eei~k~y 80 (132)
T KOG3442|consen 1 MARYLAQIIIMGSQVVGRAFVQAYRQEIAASQQAAARQAAGKSGTRSAEANSNGKITLQEAQQILNVKEPLNREEIEKRY 80 (132)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccccHHHHhhHhCCCCCCCHHHHHHHH
Confidence 7999999999999999999999999999998877665554445555555566677999999999999965 789999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy9282 80 EFLFNANDSSKGGSFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 80 r~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~ 112 (120)
.+||..|+|.+||||||||||.+|+|+|+.|++
T Consensus 81 ehLFevNdkskGGSFYLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 81 EHLFEVNDKSKGGSFYLQSKVFRAKERLDEELK 113 (132)
T ss_pred HHHHhccCcccCcceeehHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998
>KOG0723|consensus
Back Show alignment and domain information
Probab=99.96 E-value=4.7e-29 Score=175.84 Aligned_cols=99 Identities=26% Similarity=0.275 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCHHHHHHHcCCCCC-CHHHHHH
Q psy9282 3 KYIIQIAVLGAQVVGRAFAK----ALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQL-DPKEIKQ 77 (120)
Q Consensus 3 riia~l~v~g~~~~gra~~~----A~rqa~~~~~~a~~~~~~~~~~~~~~~~~~~~~Ms~~EA~~ILgv~~~-~~~~Ik~ 77 (120)
=|++|++|+++.+.||..++ ++ |+++..+. +....++|.++|+++||+.||.+||||+++ +.+.||+
T Consensus 4 ~i~~G~gvaa~a~ag~~gl~~~~~~~-qa~~~~~~-------~~~~~~~y~GGF~~kMsr~EA~lIL~v~~s~~k~Kike 75 (112)
T KOG0723|consen 4 PIIAGLGVAALAFAGRYGLWMKTLAK-QAFKTLPK-------GPFFGAFYKGGFEPKMSRREAALILGVTPSLDKDKIKE 75 (112)
T ss_pred hHHHhHHHHHHHHhchhhhhchhHHH-HHHHHcCC-------CcchhhhhhcccccccchHHHHHHhCCCccccHHHHHH
Confidence 37899999999999999999 44 44443321 123447899999999999999999999987 5699999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Q psy9282 78 RYEFLFNANDSSKGGSFYIQSKVVRAKERIDQ 109 (120)
Q Consensus 78 ~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~ 109 (120)
+|||+|..||||+|||||+++|||+||++|+.
T Consensus 76 aHrriM~~NHPD~GGSPYlAsKINEAKdlLe~ 107 (112)
T KOG0723|consen 76 AHRRIMLANHPDRGGSPYLASKINEAKDLLEG 107 (112)
T ss_pred HHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999975
>PTZ00100 DnaJ chaperone protein; Provisional
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Probab=99.89 E-value=8.9e-23 Score=146.09 Aligned_cols=103 Identities=21% Similarity=0.192 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---------CcccccccccCCCCHHHHHHHcCCCCC-C
Q psy9282 2 AKYIIQIAVLGAQVVGRAFAKALRQEYAASQEAAKRAGGGRQ---------GTAQASENLRTGMTLDEARDILDIKQL-D 71 (120)
Q Consensus 2 ariia~l~v~g~~~~gra~~~A~rqa~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~Ms~~EA~~ILgv~~~-~ 71 (120)
+-+++ |.+.++.+++|.++++|++-.+. + .....+.-+ .......+|+..||.+||++||||+++ +
T Consensus 3 ~~~~~-~~~~~~~l~~~~~~~~~~~~~~~-~--~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~~As 78 (116)
T PTZ00100 3 WPIVA-LTFGGGVLAVRYGYRYLKNQKIF-G--SNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISPTAS 78 (116)
T ss_pred chHHH-HHHhHHHHHHHHHHHHHHHHhhc-c--CccccCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCCCCC
Confidence 34455 89999999999999999642211 0 000000000 001224588999999999999999998 5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q psy9282 72 PKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERID 108 (120)
Q Consensus 72 ~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~ 108 (120)
.+||+++||+|+..||||+|||+|++++|++|||+|.
T Consensus 79 ~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 79 KERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999985
>PHA03102 Small T antigen; Reviewed
Back Show alignment and domain information
Probab=99.41 E-value=6.2e-13 Score=99.24 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=53.6
Q ss_pred CHHHHHHHcCCCCCC---HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q psy9282 57 TLDEARDILDIKQLD---PKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKKVS 115 (120)
Q Consensus 57 s~~EA~~ILgv~~~~---~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~~~~ 115 (120)
..+|++.||||+++. .++|+++||++.+.+|||+||++..+++||+||++|.+......
T Consensus 3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence 467999999999874 59999999999999999999999999999999999998877644
>cd06257 DnaJ DnaJ domain or J-domain
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Probab=99.23 E-value=2.1e-11 Score=74.22 Aligned_cols=48 Identities=23% Similarity=0.158 Sum_probs=43.5
Q ss_pred HHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHHHHH
Q psy9282 61 ARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG----SFYIQSKVVRAKERID 108 (120)
Q Consensus 61 A~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG----S~yl~~ki~~A~e~L~ 108 (120)
.++||||++. +.++|+++|++|++..|||+++ +...+.+|++||++|.
T Consensus 2 ~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 2 YYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred hHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 5899999987 6799999999999999999977 4788999999999985
DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
>smart00271 DnaJ DnaJ molecular chaperone homology domain
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Probab=99.23 E-value=1.6e-11 Score=76.04 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=45.5
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-----CHHHHHHHHHHHHHHHHH
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-----SFYIQSKVVRAKERIDQE 110 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-----S~yl~~ki~~A~e~L~~~ 110 (120)
+.++||||++. +.++|+++|++|++..|||+++ +...+.+|++||++|.+.
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~ 58 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCC
Confidence 46899999988 5699999999999999999987 568999999999999753
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []
Back Show alignment and domain information
Probab=99.22 E-value=6.8e-11 Score=74.49 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=48.1
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCC-CCCH----HHHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSK-GGSF----YIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDk-gGS~----yl~~ki~~A~e~L~~~~~~ 113 (120)
+.++||||++. +.++|+++|++|+...|||+ ++++ ..+.+|++||++|....+.
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R 60 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERR 60 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHH
Confidence 46899999998 56999999999999999999 6777 8999999999999877654
Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
>PTZ00037 DnaJ_C chaperone protein; Provisional
Back Show alignment and domain information
Probab=99.16 E-value=8.6e-11 Score=99.31 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=54.6
Q ss_pred ccCCCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy9282 52 LRTGMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~~ 113 (120)
....|.....|+||||+++ +.+|||++||+|.++.|||+++++..+.+|++||++|.+..+.
T Consensus 21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR 83 (421)
T PTZ00037 21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKR 83 (421)
T ss_pred ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHH
Confidence 3455777899999999998 5799999999999999999999999999999999999765543
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Back Show alignment and domain information
Probab=99.16 E-value=1.1e-10 Score=93.40 Aligned_cols=58 Identities=28% Similarity=0.376 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCC----CCCH-------HHHHHHHHHHHHHHHHH
Q psy9282 54 TGMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSK----GGSF-------YIQSKVVRAKERIDQEV 111 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDk----gGS~-------yl~~ki~~A~e~L~~~~ 111 (120)
..|+.++||+||||+++ +.++||++||+|+..+|||+ |.++ ..+++|++|||+|.++.
T Consensus 195 ~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~r 264 (267)
T PRK09430 195 RGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQK 264 (267)
T ss_pred CCCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 46999999999999998 67999999999999999999 2233 47888999999998764
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=99.05 E-value=2.3e-10 Score=95.64 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=48.6
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~~ 113 (120)
|...+-|+||||+.+ +.+|||++||+|.++.|||+.- + ...+.+|++|||+|.+.-+.
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKR 63 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKR 63 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 344566999999998 6799999999999999999944 4 57788899999999876554
>PHA02624 large T antigen; Provisional
Back Show alignment and domain information
Probab=98.98 E-value=1.1e-09 Score=96.48 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=51.2
Q ss_pred HHHHHHHcCCCCCC---HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy9282 58 LDEARDILDIKQLD---PKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 58 ~~EA~~ILgv~~~~---~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~~ 113 (120)
.+|++++|||+++. .++|+++||+|.+..|||+||++..+++|++||++|.++.+.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~ 68 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKS 68 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHh
Confidence 46799999999875 599999999999999999999999999999999999886664
>PRK14296 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.89 E-value=2e-09 Score=89.44 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=48.8
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKG---GSFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkg---GS~yl~~ki~~A~e~L~~~~~~ 113 (120)
|+....|+||||+++ +.+||+++||+|.++.|||+. +....+.+|++|||+|.++-+.
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR 62 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKR 62 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHh
Confidence 444577999999998 569999999999999999985 3457888999999999876544
>PRK14299 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.89 E-value=2.6e-09 Score=85.99 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=48.1
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~ 112 (120)
|+....+.||||+++ +.+||+++||+|.+..|||+..+ ...+..|++||++|.+..+
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~k 61 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEK 61 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHH
Confidence 445678999999998 56999999999999999999754 4677889999999976543
>KOG0721|consensus
Back Show alignment and domain information
Probab=98.87 E-value=3.9e-09 Score=82.98 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=48.9
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSK----GGSFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDk----gGS~yl~~ki~~A~e~L~~~~~~ 113 (120)
+-++||||++. +..|||++||+|..+.|||| +|+.+-+.+|..||..|.++...
T Consensus 100 DPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sr 158 (230)
T KOG0721|consen 100 DPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSR 158 (230)
T ss_pred CcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhH
Confidence 45899999998 56999999999999999999 89999999999999999876543
>PRK14288 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.87 E-value=3.3e-09 Score=88.01 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=46.1
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~~ 113 (120)
.-|+||||+++ +.+||+++||+|.++.|||+.. + ...+..|++|||+|.+..+.
T Consensus 4 dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR 62 (369)
T PRK14288 4 SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKR 62 (369)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHH
Confidence 56899999998 5699999999999999999954 3 46788999999999875543
>PRK14286 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.86 E-value=3.5e-09 Score=87.97 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=48.7
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~~ 113 (120)
|+-...|+||||+++ +.+||+++||+|.++.|||+.. + ...+++|++|||+|.+..+.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR 63 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKR 63 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHH
Confidence 444578999999998 5699999999999999999954 3 47889999999999765443
>KOG0713|consensus
Back Show alignment and domain information
Probab=98.86 E-value=5.3e-09 Score=86.36 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=46.9
Q ss_pred HHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCC-CC---HHHHHHHHHHHHHHHHHHh
Q psy9282 58 LDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKG-GS---FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 58 ~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkg-GS---~yl~~ki~~A~e~L~~~~~ 112 (120)
.+.-|+||||+.+ +..|||++||||..+.||||. ++ ...+.+|+.|||+|.++-+
T Consensus 15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpek 74 (336)
T KOG0713|consen 15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEK 74 (336)
T ss_pred CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 3466999999998 569999999999999999994 44 4788999999999977544
>PRK10266 curved DNA-binding protein CbpA; Provisional
Back Show alignment and domain information
Probab=98.85 E-value=4.3e-09 Score=85.16 Aligned_cols=58 Identities=24% Similarity=0.245 Sum_probs=49.2
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e~L~~~~~~ 113 (120)
|+....|+||||++. +.+||+++||+|...+|||++. ..-.++.|++||++|.+..+.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr 62 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRR 62 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHH
Confidence 445678999999998 5699999999999999999864 567889999999999875543
>PRK10767 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.84 E-value=4e-09 Score=87.29 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=48.4
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-CH---HHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-SF---YIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S~---yl~~ki~~A~e~L~~~~~~ 113 (120)
|+..+.++||||++. +.+||+++||+|.+..|||+.+ ++ ..+.+|++||++|.+..+.
T Consensus 1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r 63 (371)
T PRK10767 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKR 63 (371)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhh
Confidence 444578999999998 5699999999999999999964 43 5677899999999765543
>PRK14279 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.84 E-value=4.2e-09 Score=88.08 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=47.0
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~ 112 (120)
...|+||||++. +.+|||++||+|.++.|||+.+ + ...+.+|++|||+|.++-+
T Consensus 9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~K 67 (392)
T PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAK 67 (392)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhh
Confidence 578999999998 5699999999999999999954 4 4788899999999987544
>PRK14287 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.84 E-value=4.2e-09 Score=87.46 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=48.1
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~~ 113 (120)
|.....++||||++. +.+||+++||+|.+.+|||+..+ ...+.+|++|||+|.+..+.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR 62 (371)
T PRK14287 1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKK 62 (371)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHH
Confidence 334578999999998 56999999999999999999643 35788999999999765543
>PRK14285 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.82 E-value=4.1e-09 Score=87.32 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=46.4
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~ 112 (120)
...|+||||+++ +.+||+++||+|.++.|||+.. + ...+.+|++||++|.++.+
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~k 61 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNK 61 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcch
Confidence 467999999998 5699999999999999999964 3 3679999999999987543
>PRK14294 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.82 E-value=5.7e-09 Score=86.39 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=49.1
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~~ 113 (120)
|+..+.++||||+++ +.+||+++||+|.+..|||+.. + ...+++|++||++|.+..+.
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r 63 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKR 63 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHH
Confidence 555678999999988 5699999999999999999965 2 36788999999999876543
>PRK14281 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.81 E-value=8.5e-09 Score=86.29 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=47.2
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS----FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS----~yl~~ki~~A~e~L~~~~~~ 113 (120)
.+.|+||||++. +.+||+++||+|.+.+|||+..+ ...+.+|++|||+|.+..+.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r 62 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKR 62 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhh
Confidence 367999999998 56999999999999999999653 46789999999999876543
>PRK14280 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.81 E-value=5.4e-09 Score=86.87 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=49.0
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e~L~~~~~~ 113 (120)
|.....++||||+++ +.+||+++||+|.+.+|||+.- ....+.+|++||++|.+..+.
T Consensus 1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr 62 (376)
T PRK14280 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKR 62 (376)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHH
Confidence 444578999999998 5699999999999999999843 457889999999999876553
>PRK14278 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.81 E-value=6e-09 Score=86.71 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=46.5
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSFY---IQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~y---l~~ki~~A~e~L~~~~~~ 113 (120)
+-|+||||+++ +.+||+++||+|.++.|||+.+++. .+.+|++|||+|.+..+.
T Consensus 4 d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r 61 (378)
T PRK14278 4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKR 61 (378)
T ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhh
Confidence 56899999988 5699999999999999999987754 678899999999765543
>PRK14283 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.78 E-value=8.9e-09 Score=85.55 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=48.0
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKG---GSFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkg---GS~yl~~ki~~A~e~L~~~~~~ 113 (120)
...|+||||+++ +.+||+++||+|.++.|||+. ++...+.+|++|||+|.++.+.
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR 63 (378)
T PRK14283 5 RDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKR 63 (378)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHH
Confidence 467999999998 569999999999999999995 4567899999999999886654
>PRK14300 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.77 E-value=1.4e-08 Score=84.23 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=47.1
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~~ 113 (120)
...++||||++. +.+||+++||+|.+.+|||+..+ ...+++|++||++|.+..+.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r 61 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKR 61 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHh
Confidence 367999999998 56999999999999999998543 46789999999999876644
>PRK14282 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.77 E-value=9.5e-09 Score=85.13 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=48.0
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C----HHHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S----FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S----~yl~~ki~~A~e~L~~~~~~ 113 (120)
|...+.|+||||++. +.+||+++||+|.++.|||+.. . ...+.+|++|||+|.+..+.
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR 64 (369)
T PRK14282 1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKR 64 (369)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhH
Confidence 334578999999998 5699999999999999999953 2 46888999999999775543
>PRK14301 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.76 E-value=1.1e-08 Score=85.03 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=48.6
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-CH---HHHHHHHHHHHHHHHHHhh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-SF---YIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S~---yl~~ki~~A~e~L~~~~~~ 113 (120)
|+....++||||+++ +.++|+++||+|.+..|||+.. ++ ..+++|++|||+|.+..+.
T Consensus 1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr 63 (373)
T PRK14301 1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKR 63 (373)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhh
Confidence 344578999999988 5699999999999999999954 33 4788999999999886654
>PRK14276 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.74 E-value=1.5e-08 Score=84.35 Aligned_cols=56 Identities=21% Similarity=0.143 Sum_probs=47.5
Q ss_pred CHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHh
Q psy9282 57 TLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 57 s~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e~L~~~~~ 112 (120)
+....|+||||++. +.+||+++||+|.+.+|||+.. ....+..|++|||+|.+..+
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~k 61 (380)
T PRK14276 2 NNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQK 61 (380)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhh
Confidence 33468999999998 5699999999999999999854 35788999999999977554
>PRK14298 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.72 E-value=1.5e-08 Score=84.44 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=47.1
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~~ 113 (120)
.+.++||||++. +.+||+++||+|.+..|||+..+ ...+..|++|||+|.+..+.
T Consensus 5 ~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR 63 (377)
T PRK14298 5 RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKR 63 (377)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhh
Confidence 478999999998 56999999999999999999643 36778999999999886543
>PRK14295 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.71 E-value=1.8e-08 Score=84.15 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=46.4
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~ 112 (120)
...|+||||+++ +.+||+++||+|.+..|||+.. + ...++.|++||++|.+..+
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~ 67 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKK 67 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhh
Confidence 578999999998 5699999999999999999953 3 3688899999999976543
>PRK14297 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.70 E-value=1.9e-08 Score=83.64 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=47.0
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~~ 113 (120)
...|+||||++. +.++|+++||+|.+..|||+.. + ...++.|++||++|.+..+.
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r 63 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKK 63 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhh
Confidence 478999999998 5699999999999999999954 3 36788999999999886544
>TIGR02349 DnaJ_bact chaperone protein DnaJ
Back Show alignment and domain information
Probab=98.69 E-value=3.5e-08 Score=81.08 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=45.6
Q ss_pred HHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHhh
Q psy9282 61 ARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 61 A~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~~ 113 (120)
-|+||||++. +.++|+++||+|.+..|||++.+ ...+++|++||++|.+..+.
T Consensus 2 ~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R 58 (354)
T TIGR02349 2 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKR 58 (354)
T ss_pred hHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHH
Confidence 3789999988 56999999999999999999753 46788999999999886644
This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
>PRK14277 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.69 E-value=2e-08 Score=83.68 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=46.6
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-C---HHHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-S---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S---~yl~~ki~~A~e~L~~~~~~ 113 (120)
.+.++||||+++ +.+||+++||+|.+..|||+.. + ...+.+|++|||+|.+..+.
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr 64 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKR 64 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 478999999998 5699999999999999999954 3 35788999999999865443
>PRK14291 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.65 E-value=5.8e-08 Score=80.88 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=46.5
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~~ 113 (120)
.-|+||||++. +.++|+++||+|.+..|||+..+ ...+..|++||++|.+..+.
T Consensus 4 d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR 61 (382)
T PRK14291 4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKR 61 (382)
T ss_pred CHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHH
Confidence 56899999998 56999999999999999999643 57789999999999876543
>PRK14292 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.65 E-value=5.3e-08 Score=80.62 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=46.0
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~ 112 (120)
..++||||++. +.++|+++||+|.+..|||+.++ ...+..|++||++|.+..+
T Consensus 3 d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~ 59 (371)
T PRK14292 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEK 59 (371)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhh
Confidence 46899999998 56999999999999999999865 4677889999999987554
>PRK14290 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.59 E-value=7.9e-08 Score=79.57 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=46.2
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS-----FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS-----~yl~~ki~~A~e~L~~~~~~ 113 (120)
.-|+||||+++ +.+||+++||+|.++.|||+... ...+++|++||++|.+..+.
T Consensus 4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r 63 (365)
T PRK14290 4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63 (365)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhh
Confidence 56899999998 56999999999999999999542 26778899999999886654
>KOG0715|consensus
Back Show alignment and domain information
Probab=98.58 E-value=8.3e-08 Score=77.72 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHHHHHHHHhhhh
Q psy9282 54 TGMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSK---GGSFYIQSKVVRAKERIDQEVKKVS 115 (120)
Q Consensus 54 ~~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDk---gGS~yl~~ki~~A~e~L~~~~~~~~ 115 (120)
..|+.+..++||||+++ +..|||++|++|.+..|||. .+..-.+++|.+|||+|.++.+...
T Consensus 38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~ 103 (288)
T KOG0715|consen 38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQE 103 (288)
T ss_pred ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHH
Confidence 34555689999999998 56999999999999999997 4667899999999999988777654
>PRK14284 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.58 E-value=8.5e-08 Score=80.11 Aligned_cols=53 Identities=25% Similarity=0.243 Sum_probs=45.1
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHHHHh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS----FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS----~yl~~ki~~A~e~L~~~~~ 112 (120)
.-|+||||+++ +++||+++||+|.+..|||+..+ ...+++|++||++|.+..+
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~k 59 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQK 59 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHH
Confidence 35899999998 67999999999999999999542 4678899999999986543
>PRK14289 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.57 E-value=9.2e-08 Score=79.63 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=47.3
Q ss_pred HHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCC-CC---HHHHHHHHHHHHHHHHHHhh
Q psy9282 58 LDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKG-GS---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 58 ~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkg-GS---~yl~~ki~~A~e~L~~~~~~ 113 (120)
....|++|||++. +.+||+++||+|.+..|||+. ++ ...+++|++||++|.+..+.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 64 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKR 64 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHH
Confidence 3578999999998 569999999999999999995 34 36788999999999876543
>KOG1789|consensus
Back Show alignment and domain information
Probab=98.56 E-value=2.5e-07 Score=86.13 Aligned_cols=74 Identities=23% Similarity=0.280 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCHHHHHHHcCCCCC-----CHHHHHHHHHHHHHhcCCCC
Q psy9282 16 VGRAFAKALRQEYAASQEAAKRAGGGRQGTAQASENLRTGMTLDEARDILDIKQL-----DPKEIKQRYEFLFNANDSSK 90 (120)
Q Consensus 16 ~gra~~~A~rqa~~~~~~a~~~~~~~~~~~~~~~~~~~~~Ms~~EA~~ILgv~~~-----~~~~Ik~~yr~L~~~nhPDk 90 (120)
+.|..+.+|+.++...+ ..||.+|||+||+++-. .+++|+++|+||..+.||||
T Consensus 1259 fL~~~L~~W~~ElekKP---------------------~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDK 1317 (2235)
T KOG1789|consen 1259 FLRCCLATWYNELEKKP---------------------ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDK 1317 (2235)
T ss_pred HHHHHHHHHHHHHhcCC---------------------CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCC
Confidence 45778888987764321 34999999999999864 35999999999999999999
Q ss_pred CC-CHHHHHHHHHHHHHHHHH
Q psy9282 91 GG-SFYIQSKVVRAKERIDQE 110 (120)
Q Consensus 91 gG-S~yl~~ki~~A~e~L~~~ 110 (120)
.- -...+.+||.|||+|..+
T Consensus 1318 NPEGRemFe~VnKAYE~L~~~ 1338 (2235)
T KOG1789|consen 1318 NPEGREMFERVNKAYELLSSE 1338 (2235)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 53 357889999999999843
>PRK14293 chaperone protein DnaJ; Provisional
Back Show alignment and domain information
Probab=98.53 E-value=1.5e-07 Score=78.11 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=46.7
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e~L~~~~~~ 113 (120)
..++||||++. +.++|+++||+|.+..|||+.. ..-.++.|++||++|.++.+.
T Consensus 4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R 61 (374)
T PRK14293 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETR 61 (374)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHH
Confidence 56999999988 5799999999999999999853 457889999999999876654
>KOG0712|consensus
Back Show alignment and domain information
Probab=98.52 E-value=1.2e-07 Score=78.54 Aligned_cols=48 Identities=23% Similarity=0.193 Sum_probs=43.4
Q ss_pred HHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHH
Q psy9282 62 RDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-SFYIQSKVVRAKERIDQ 109 (120)
Q Consensus 62 ~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S~yl~~ki~~A~e~L~~ 109 (120)
+.||||.++ +.+|||++||+|..++||||.. ...-+.+|.+|||+|.+
T Consensus 7 y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd 56 (337)
T KOG0712|consen 7 YDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSD 56 (337)
T ss_pred ceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC
Confidence 789999998 5699999999999999999954 55889999999999976
>KOG0716|consensus
Back Show alignment and domain information
Probab=98.46 E-value=3.6e-07 Score=73.87 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=49.0
Q ss_pred CCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHHHHh
Q psy9282 55 GMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS----FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 55 ~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS----~yl~~ki~~A~e~L~~~~~ 112 (120)
......-+.+||++++ +.++|||+||+|++..|||+.|. +-.+..||.||++|.+-.+
T Consensus 27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~k 89 (279)
T KOG0716|consen 27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTK 89 (279)
T ss_pred ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhh
Confidence 3446678999999998 56999999999999999999776 4678889999999976544
>PRK05014 hscB co-chaperone HscB; Provisional
Back Show alignment and domain information
Probab=98.45 E-value=4.2e-07 Score=68.55 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=42.0
Q ss_pred HHHHcCCCCC---CHHHHHHHHHHHHHhcCCCC--CCCHH-------HHHHHHHHHHHHHHHHh
Q psy9282 61 ARDILDIKQL---DPKEIKQRYEFLFNANDSSK--GGSFY-------IQSKVVRAKERIDQEVK 112 (120)
Q Consensus 61 A~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDk--gGS~y-------l~~ki~~A~e~L~~~~~ 112 (120)
-+.+|||++. +..+|+++|++|...+|||+ +.++. ..+.||+||++|...+.
T Consensus 3 yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~ 66 (171)
T PRK05014 3 YFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLK 66 (171)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhH
Confidence 4789999986 56999999999999999999 33332 45679999999976543
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=98.45 E-value=5.7e-07 Score=65.49 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=47.0
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC-CH----HHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG-SF----YIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG-S~----yl~~ki~~A~e~L~~~~~~ 113 (120)
..-+.||||.+. +.++|+++||+|....|||+.. .+ ..+..|++||++|......
T Consensus 6 ~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r 66 (237)
T COG2214 6 LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERR 66 (237)
T ss_pred hhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHH
Confidence 457999999987 5699999999999999999944 44 8899999999999775544
>KOG0718|consensus
Back Show alignment and domain information
Probab=98.39 E-value=6.4e-07 Score=77.18 Aligned_cols=54 Identities=22% Similarity=0.171 Sum_probs=47.8
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCH-------HHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSF-------YIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~-------yl~~ki~~A~e~L~~~~~ 112 (120)
.|-|.+|||+++ +.|||+++||++....||||--+| ..|++|.+|||+|.+.-+
T Consensus 9 ~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~k 70 (546)
T KOG0718|consen 9 IELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQK 70 (546)
T ss_pred hhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHH
Confidence 478999999998 679999999999999999997764 789999999999977544
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ
Back Show alignment and domain information
Probab=98.37 E-value=6.6e-07 Score=80.86 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=45.3
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHHHHHHHHh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSF---YIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~---yl~~ki~~A~e~L~~~~~ 112 (120)
..|+||||++. +.++|+++||+|.+..|||+++++ -.+.+|++||++|.+..+
T Consensus 3 DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~K 59 (871)
T TIGR03835 3 DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKK 59 (871)
T ss_pred ChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHH
Confidence 46899999998 569999999999999999997754 357889999999976544
This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
>PRK01356 hscB co-chaperone HscB; Provisional
Back Show alignment and domain information
Probab=98.28 E-value=2.1e-06 Score=64.60 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=42.9
Q ss_pred HHHHcCCCCC---CHHHHHHHHHHHHHhcCCCCCCCH-------HHHHHHHHHHHHHHHHHh
Q psy9282 61 ARDILDIKQL---DPKEIKQRYEFLFNANDSSKGGSF-------YIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 61 A~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDkgGS~-------yl~~ki~~A~e~L~~~~~ 112 (120)
-+.+|||++. +..+|+++|++|...+|||+..+. ...+.||+||++|..-+.
T Consensus 4 yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~ 65 (166)
T PRK01356 4 YFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALK 65 (166)
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 4789999986 569999999999999999996542 235699999999986553
>KOG0717|consensus
Back Show alignment and domain information
Probab=98.27 E-value=1.3e-06 Score=75.13 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=45.0
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHHHH
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS-----FYIQSKVVRAKERIDQ 109 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS-----~yl~~ki~~A~e~L~~ 109 (120)
.--+.||||+.. ++.+|+++||+|....|||+.+. +..|+-|+.||++|.+
T Consensus 8 ~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSd 64 (508)
T KOG0717|consen 8 RCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSD 64 (508)
T ss_pred hHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcC
Confidence 457899999987 57999999999999999999664 5788999999999964
>PRK00294 hscB co-chaperone HscB; Provisional
Back Show alignment and domain information
Probab=98.24 E-value=1.6e-06 Score=65.83 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=42.6
Q ss_pred HHHHcCCCCC---CHHHHHHHHHHHHHhcCCCCC-C-CH-------HHHHHHHHHHHHHHHHHh
Q psy9282 61 ARDILDIKQL---DPKEIKQRYEFLFNANDSSKG-G-SF-------YIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 61 A~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDkg-G-S~-------yl~~ki~~A~e~L~~~~~ 112 (120)
-+.+||+++. +..+|+++||+|...+|||+- + +. -..+.||+||++|...+.
T Consensus 6 ~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~ 69 (173)
T PRK00294 6 HFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPR 69 (173)
T ss_pred hhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhh
Confidence 4789999987 569999999999999999993 2 22 246789999999987654
>PRK03578 hscB co-chaperone HscB; Provisional
Back Show alignment and domain information
Probab=98.20 E-value=2.8e-06 Score=64.49 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=43.6
Q ss_pred HHHHHHcCCCCC---CHHHHHHHHHHHHHhcCCCCC--CCH-------HHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL---DPKEIKQRYEFLFNANDSSKG--GSF-------YIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDkg--GS~-------yl~~ki~~A~e~L~~~~~ 112 (120)
..-+.||||++. ++.+|+++|++|...+|||+- .+. -..+.||.||++|..-+.
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~ 71 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLK 71 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhh
Confidence 467899999986 579999999999999999993 232 224799999999977554
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Back Show alignment and domain information
Probab=98.15 E-value=3.3e-06 Score=78.05 Aligned_cols=55 Identities=29% Similarity=0.210 Sum_probs=46.8
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHhh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~~ 113 (120)
..-+.||||+++ +..+|+++||+|....|||+... .--|++|++||++|.+....
T Consensus 573 ~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kR 631 (1136)
T PTZ00341 573 TLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKK 631 (1136)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHH
Confidence 468999999998 56999999999999999999643 35688999999999775544
>KOG0719|consensus
Back Show alignment and domain information
Probab=98.11 E-value=5.3e-06 Score=66.29 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=46.5
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCC------CCHHHHHHHHHHHHHHHHHHh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKG------GSFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkg------GS~yl~~ki~~A~e~L~~~~~ 112 (120)
.-+.||||..+ +..+|+++|++|.+..|||+. -+..-|++++.||.+|.++-+
T Consensus 15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeek 74 (264)
T KOG0719|consen 15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEK 74 (264)
T ss_pred CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 67999999998 679999999999999999996 467889999999999966443
>KOG0691|consensus
Back Show alignment and domain information
Probab=98.06 E-value=9.8e-06 Score=66.27 Aligned_cols=53 Identities=23% Similarity=0.177 Sum_probs=45.5
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCC-CCCH---HHHHHHHHHHHHHHHHH
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSK-GGSF---YIQSKVVRAKERIDQEV 111 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDk-gGS~---yl~~ki~~A~e~L~~~~ 111 (120)
.|-|.||||++. +..+|+++||......|||| -|+| ..|+++-+||++|.++-
T Consensus 5 ~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~ 62 (296)
T KOG0691|consen 5 TDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEE 62 (296)
T ss_pred chHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHH
Confidence 467999999988 67999999999999999999 4555 67788999999997643
>KOG0720|consensus
Back Show alignment and domain information
Probab=98.06 E-value=3.8e-06 Score=72.13 Aligned_cols=54 Identities=20% Similarity=0.082 Sum_probs=46.4
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e~L~~~~~ 112 (120)
..|+.+|||+++ +.++||+.||++.+..||||.- -...+.++..|+|+|.+..+
T Consensus 235 ~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~k 292 (490)
T KOG0720|consen 235 LDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVK 292 (490)
T ss_pred CCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhh
Confidence 459999999987 6799999999999999999954 45888999999999965443
>PRK01773 hscB co-chaperone HscB; Provisional
Back Show alignment and domain information
Probab=97.65 E-value=0.00014 Score=55.17 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=42.5
Q ss_pred HHHHcCCCCC---CHHHHHHHHHHHHHhcCCCC--CCC-------HHHHHHHHHHHHHHHHHHh
Q psy9282 61 ARDILDIKQL---DPKEIKQRYEFLFNANDSSK--GGS-------FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 61 A~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDk--gGS-------~yl~~ki~~A~e~L~~~~~ 112 (120)
-..+||+++. ++..++++|+.|-...|||+ +.| -...+.||+||.+|.+-+.
T Consensus 4 yF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~ 67 (173)
T PRK01773 4 PFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPIL 67 (173)
T ss_pred hHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHH
Confidence 3679999987 67999999999999999999 333 2356789999999977553
>KOG0568|consensus
Back Show alignment and domain information
Probab=97.65 E-value=0.00025 Score=57.31 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=48.2
Q ss_pred CCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHH-HHHHHHhh
Q psy9282 55 GMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKE-RIDQEVKK 113 (120)
Q Consensus 55 ~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e-~L~~~~~~ 113 (120)
+--..|.+.||||++. +.++|+.+|..|.+..|||.|. +..-+.+|.+|+. +|.+.+.+
T Consensus 43 ke~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~~k 106 (342)
T KOG0568|consen 43 KEKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKFAK 106 (342)
T ss_pred HHHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999998 5699999999999999999864 5678889999997 55544443
>KOG0722|consensus
Back Show alignment and domain information
Probab=97.64 E-value=3.2e-05 Score=62.85 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=46.7
Q ss_pred HHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHHHh
Q psy9282 58 LDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGG---SFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 58 ~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgG---S~yl~~ki~~A~e~L~~~~~ 112 (120)
.+..+.+|||... +..||.++||.|...+|||+.- +.-++.+|..|||+|.++-.
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~ 90 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNET 90 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhh
Confidence 4679999999987 5699999999999999999933 45789999999999976543
>KOG0550|consensus
Back Show alignment and domain information
Probab=97.54 E-value=9.3e-05 Score=63.45 Aligned_cols=54 Identities=26% Similarity=0.244 Sum_probs=45.8
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCC-CCC----HHHHHHHHHHHHHHHHHHhh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSK-GGS----FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDk-gGS----~yl~~ki~~A~e~L~~~~~~ 113 (120)
.-++|||+... +..+|+++||++...||||+ .|| .-++..|-+||.+|.+..+.
T Consensus 374 d~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr 433 (486)
T KOG0550|consen 374 DWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKR 433 (486)
T ss_pred hHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHH
Confidence 35789999988 56999999999999999999 667 56788899999999776554
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB
Back Show alignment and domain information
Probab=97.49 E-value=0.00017 Score=53.74 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHhcCCCC--CCC-------HHHHHHHHHHHHHHHHHHh
Q psy9282 71 DPKEIKQRYEFLFNANDSSK--GGS-------FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 71 ~~~~Ik~~yr~L~~~nhPDk--gGS-------~yl~~ki~~A~e~L~~~~~ 112 (120)
++.+|+++|++|....|||+ +.+ ....+.||+||++|...+.
T Consensus 4 D~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~ 54 (157)
T TIGR00714 4 DTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLM 54 (157)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhh
Confidence 45889999999999999998 322 2567899999999987554
This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Back Show alignment and domain information
Probab=97.48 E-value=0.00015 Score=62.83 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=43.6
Q ss_pred HHHHcCCCCCC-HHHHHHHHHHHHHhcCCCCCCC---------HHHHHHHHHHHHHHHHHHhh
Q psy9282 61 ARDILDIKQLD-PKEIKQRYEFLFNANDSSKGGS---------FYIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 61 A~~ILgv~~~~-~~~Ik~~yr~L~~~nhPDkgGS---------~yl~~ki~~A~e~L~~~~~~ 113 (120)
.++|||++.++ ..+||++||+|.++.||||--. ..-...|+.||+.|.++...
T Consensus 100 PyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~r 162 (610)
T COG5407 100 PYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRR 162 (610)
T ss_pred hHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 49999999885 5999999999999999999543 23455699999999887654
>KOG1150|consensus
Back Show alignment and domain information
Probab=97.40 E-value=0.00032 Score=55.32 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=36.8
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy9282 60 EARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 60 EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~ 112 (120)
-++.+|.|+|. +.++|+++||+|....|||+.-+. +.+-..|++++...++
T Consensus 54 NpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd--~~rAqkAFdivkKA~k 105 (250)
T KOG1150|consen 54 NPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD--AERAQKAFDIVKKAYK 105 (250)
T ss_pred ChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc--HHHHHHHHHHHHHHHH
Confidence 36888999887 679999999999999999997654 2333344444444433
>KOG0624|consensus
Back Show alignment and domain information
Probab=97.37 E-value=0.00031 Score=59.70 Aligned_cols=57 Identities=19% Similarity=0.114 Sum_probs=45.3
Q ss_pred CCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCHH-------HHHHHHHHHHHHHHHHh
Q psy9282 56 MTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSFY-------IQSKVVRAKERIDQEVK 112 (120)
Q Consensus 56 Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~y-------l~~ki~~A~e~L~~~~~ 112 (120)
-..+.-++||||..+ +..||.|+||+|...+|||.=-+.. -+--|..|+|+|.++-+
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~Ek 455 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEK 455 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHH
Confidence 445688999999998 5699999999999999999755544 34448899999976433
>KOG0714|consensus
Back Show alignment and domain information
Probab=97.33 E-value=0.00021 Score=54.55 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=41.1
Q ss_pred HHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCCH--H---HHHHHHHHHHHHHHHHh
Q psy9282 59 DEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGSF--Y---IQSKVVRAKERIDQEVK 112 (120)
Q Consensus 59 ~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS~--y---l~~ki~~A~e~L~~~~~ 112 (120)
.+.+.||||... +.++|+++|++|.+..|||+.-++ . .+..|.+||++|.+..+
T Consensus 3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~k 62 (306)
T KOG0714|consen 3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKK 62 (306)
T ss_pred ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHH
Confidence 468999999966 457999999999999999995554 1 23456678887765443
>PF13446 RPT: A repeated domain in UCH-protein
Back Show alignment and domain information
Probab=96.47 E-value=0.021 Score=35.88 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=28.3
Q ss_pred CCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCC
Q psy9282 55 GMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDS 88 (120)
Q Consensus 55 ~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhP 88 (120)
.|+.++|+.+||+++. +.+.|...|+..+. +.|
T Consensus 1 ~~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P 34 (62)
T PF13446_consen 1 YMDVEEAYEILGIDEDTDDDFIISAFQSKVN-DDP 34 (62)
T ss_pred CCCHHHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh
Confidence 4999999999999887 55999999999888 445
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=96.39 E-value=0.0086 Score=44.97 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=35.7
Q ss_pred HHHHHHcCCCCCC-HHHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHH
Q psy9282 59 DEARDILDIKQLD-PKEIKQRYEFLFNANDSSK----GGSFYIQSKVVRAK 104 (120)
Q Consensus 59 ~EA~~ILgv~~~~-~~~Ik~~yr~L~~~nhPDk----gGS~yl~~ki~~A~ 104 (120)
.+++.+||++... ..+|+++|+.++..+|||+ |-....+.++.+.-
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~ 163 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKL 163 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHH
Confidence 6899999999885 5999999999999999998 44444444443333
>KOG0431|consensus
Back Show alignment and domain information
Probab=96.05 E-value=0.0081 Score=51.74 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHhcCCCC-CCC------HHHHHHHHHHH
Q psy9282 71 DPKEIKQRYEFLFNANDSSK-GGS------FYIQSKVVRAK 104 (120)
Q Consensus 71 ~~~~Ik~~yr~L~~~nhPDk-gGS------~yl~~ki~~A~ 104 (120)
++++|||+|||-....|||| .|. -|++.||+.++
T Consensus 401 tp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l 441 (453)
T KOG0431|consen 401 TPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDAL 441 (453)
T ss_pred CHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHH
Confidence 57999999999999999999 444 47888887766
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=95.83 E-value=0.016 Score=47.94 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=43.9
Q ss_pred HHHHHHcCCCCC----CHHHHHHHHHHHHHhcCCCC---CCC---HHHHHHHHHHHHHHHHHH
Q psy9282 59 DEARDILDIKQL----DPKEIKQRYEFLFNANDSSK---GGS---FYIQSKVVRAKERIDQEV 111 (120)
Q Consensus 59 ~EA~~ILgv~~~----~~~~Ik~~yr~L~~~nhPDk---gGS---~yl~~ki~~A~e~L~~~~ 111 (120)
..-+.+|||+.- ++.+|.++|++-|-..|||+ ||+ ...+.=|..|+|+|.+..
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~ 105 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRK 105 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHH
Confidence 567889999874 57999999999999999998 554 566777899999997643
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised
Back Show alignment and domain information
Probab=87.42 E-value=1.8 Score=33.48 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH-HHHHhhh
Q psy9282 71 DPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERI-DQEVKKV 114 (120)
Q Consensus 71 ~~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L-~~~~~~~ 114 (120)
+-|||++++.+|...+ +|+.....+|..|||.| ++.++.+
T Consensus 5 SfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~ILM~rL~~R 45 (194)
T PF11833_consen 5 SFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAILMERLRQR 45 (194)
T ss_pred CHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999998 78999999999999764 5555543
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 120
d1fafa_ 79
Large T antigen, the N-terminal J domain {Murine p
99.59 d1gh6a_ 114
Large T antigen, the N-terminal J domain {Simian v
99.43 d1iura_ 88
Hypothetical protein KIAA0730 {Human (Homo sapiens
99.19 d1xbla_ 75
DnaJ chaperone, N-terminal (J) domain {Escherichia
99.05 d1hdja_ 77
HSP40 {Human (Homo sapiens) [TaxId: 9606]}
98.97 d1fpoa1 76
HSC20 (HSCB), N-terminal (J) domain {Escherichia c
98.94 d1wjza_ 94
CSL-type zinc finger-containing protein 3 (J-domai
98.92 d1nz6a_ 98
Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}
98.73
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}
Back Hide information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]
Probab=99.59 E-value=1.7e-15 Score=99.15 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=53.1
Q ss_pred CHHHHHHHcCCCCC---CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Q psy9282 57 TLDEARDILDIKQL---DPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKKVS 115 (120)
Q Consensus 57 s~~EA~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~~~~ 115 (120)
..+++++||||++. +.++|+++||+|...+|||+||++..+.+||+||++|.++.....
T Consensus 9 ~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d~~~r~~ 70 (79)
T d1fafa_ 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLR 70 (79)
T ss_dssp HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHCCHHHHHH
Confidence 34678999999987 569999999999999999999999999999999999999886543
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]
Probab=99.43 E-value=3.7e-14 Score=97.36 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=50.3
Q ss_pred HHHHHHcCCCCC---CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy9282 59 DEARDILDIKQL---DPKEIKQRYEFLFNANDSSKGGSFYIQSKVVRAKERIDQEVKKV 114 (120)
Q Consensus 59 ~EA~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDkgGS~yl~~ki~~A~e~L~~~~~~~ 114 (120)
.+-++||||+.. +.++||++||+|++.+|||+||++..+.+|++||++|....+..
T Consensus 8 ~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~e~F~~I~~AY~vLsd~~kR~ 66 (114)
T d1gh6a_ 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYA 66 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhCCHHHHH
Confidence 467999999987 36899999999999999999999999999999999998866543
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.6e-11 Score=81.25 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=47.4
Q ss_pred CHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHHHHHHh
Q psy9282 57 TLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS-----FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 57 s~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS-----~yl~~ki~~A~e~L~~~~~ 112 (120)
.++|+++||+|+++ +.++|+++||+|++..|||+.++ ...+.+|+.||++|.+...
T Consensus 14 ~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~~~~ 75 (88)
T d1iura_ 14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAF 75 (88)
T ss_dssp CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999988 56999999999999999999543 2457889999999976543
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=8.1e-11 Score=75.14 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=43.0
Q ss_pred HHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHHH
Q psy9282 61 ARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS----FYIQSKVVRAKERIDQE 110 (120)
Q Consensus 61 A~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS----~yl~~ki~~A~e~L~~~ 110 (120)
-+.||||+++ +.++|+++||+|+...|||+..+ ...+.+|++||++|.+.
T Consensus 5 yY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~ 59 (75)
T d1xbla_ 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS 59 (75)
T ss_dssp TTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCH
Confidence 4789999998 67999999999999999999542 35689999999999653
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=3.9e-10 Score=72.06 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=44.5
Q ss_pred HHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHHHh
Q psy9282 61 ARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS---FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 61 A~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS---~yl~~ki~~A~e~L~~~~~ 112 (120)
-++||||++. +.++|+++|++|...+|||+... ...+.+|++||++|.+...
T Consensus 5 yY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~ 60 (77)
T d1hdja_ 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60 (77)
T ss_dssp SHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHH
Confidence 4799999998 56999999999999999999654 4668899999999976544
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=8.2e-10 Score=70.15 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=42.9
Q ss_pred HHHHcCCCCC---CHHHHHHHHHHHHHhcCCCC--CCCH-------HHHHHHHHHHHHHHHHHhh
Q psy9282 61 ARDILDIKQL---DPKEIKQRYEFLFNANDSSK--GGSF-------YIQSKVVRAKERIDQEVKK 113 (120)
Q Consensus 61 A~~ILgv~~~---~~~~Ik~~yr~L~~~nhPDk--gGS~-------yl~~ki~~A~e~L~~~~~~ 113 (120)
.++||||+++ +.++|+++|++|...+|||+ +.++ ..++.|++||++|.+..+.
T Consensus 3 yy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R 67 (76)
T d1fpoa1 3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMR 67 (76)
T ss_dssp HHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred hHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4789999975 46999999999999999998 3333 4457899999999875543
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.92 E-value=6.5e-10 Score=73.72 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=44.9
Q ss_pred ccCCCCHHHHHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC----------HHHHHHHHHHHHHHHH
Q psy9282 52 LRTGMTLDEARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS----------FYIQSKVVRAKERIDQ 109 (120)
Q Consensus 52 ~~~~Ms~~EA~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS----------~yl~~ki~~A~e~L~~ 109 (120)
++..|.. ..+.||||+++ +.++|+++|++|+..+|||+... ...+..|++||++|.+
T Consensus 10 ~~~~~~~-d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d 77 (94)
T d1wjza_ 10 LEQTLKK-DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77 (94)
T ss_dssp CSSSSCS-CHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hhhhhcc-ChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333443 68999999998 56999999999999999998422 2446789999999964
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.73 E-value=5.7e-10 Score=74.71 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=43.5
Q ss_pred HHHHcCCCCC-CHHHHHHHHHHHHHhcCCCCCCC-------HHHHHHHHHHHHHHHHHHh
Q psy9282 61 ARDILDIKQL-DPKEIKQRYEFLFNANDSSKGGS-------FYIQSKVVRAKERIDQEVK 112 (120)
Q Consensus 61 A~~ILgv~~~-~~~~Ik~~yr~L~~~nhPDkgGS-------~yl~~ki~~A~e~L~~~~~ 112 (120)
.+++||+.+. ++++|+++|++++...|||+.++ .-.+..|++||++|.++-.
T Consensus 35 ~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~ 94 (98)
T d1nz6a_ 35 KWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQ 94 (98)
T ss_dssp SCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 4789999887 78999999999999999998443 2467889999999986543
