Psyllid ID: psy92

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------64
MGNFRSHSPSAMDETIVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHPKGALKLRFKKLKVLFVSDRSKRANEQPGLPRGVRISQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEALSSHF
ccccccccccccccccEEEEEEEccccccccEEEEEEEcccEEEEEEEEccccccEEEEEEEEEEEEccccccccccccccccccccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEccccccEEEEEEcccccccccEEEEEcccEEEEEEEcccccccccEEEEEEEccccccEEEEEccccEEEEEEEEccccccccccccccccccccccccccccccccEEEEEEEcccccEEEccEEEcccccEEEEEEEEEEEEEcccccccccEEEEEEEEcccccccccEEEEEEEEEEEccccccccccccEEEEEEEEEcccEEEEcccccEEEEEEccEEEEEEccccccEEEEEEEccEEEEEEEEEccEEEEEEccccEEEEEEEccccEEEEEEEcccccccccccccccccccEEEccccEEEEEEEccccccEEEEEccccccEEEccccccEEEEEcccccEEEEEEcccccccccccEEEEEEEEcccccEEEEEEEEcccccccccccccccEEEEEEEcccEEEEEEEccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccc
ccccccccHcccccccEEEEEEEEccccccccEEEEEEcccEEEEEEEEcccccccEEEEEEEccEEcccccccccccccccccccEEEEEEEEccccEEEEEEccccEEEEEEcccEEEEccccccccEEEEcccccccccccEEEEEcccEEEEEEEccHccccccccEEEEEccccccEEEEEccccEEEEEEEcccccccHHHHccHHHHHHccccHHHcccccccccEEEEEcccccEEEcccEEEccccccEEEEEEEEEcccccccccEEEEEEEEEEccccccccccEEEEEEEEEEcccccccccccEEEEEEEEccccccHEHHHHccEEEEEEccEEEEEEcccccHHHHHcccccEEEEEEEEcccEEEEEEcHHEEEEEEEccccccEEEEEccccccEEEEEEEEccccEEEEcccccEEEEEcccccccccccccccccccEEEEEcccccEEEEcccccEEEEEEcccccccccccEEEEEEEEEccccEEEEEEEEcccccccccccccccEEEEEEEEccEEEEEEEccHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcc
mgnfrshspsamdETIVQELLTVSLglhgnrplllVRTQHELLIYQAFRHPKGALKLRFKKLKVLFVSdrskraneqpglprgvrisQMRYFSNIAGyqgvflcgphpawlfltsrgelrahpmtidgpvstlapfhnvncprgflyfnakselrisvlpthlsydapwpvrkvplkctphfLAYHLETKTYCivtstaepstdyykfngedkelvtdprdsrfipplvsqfhvslfspfsweeipqtnfplheWEHVLCLKNVSMEYEGTLSGLRGYIAlgtnynysedvtcrGRILLFDIievvpepgqpltknKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWqlkdndltgiafIDTEVYIASMVSVKNLILVGDYARSIALLRyqpeyrtlslvardykptqpnskgyyagnpsrgiidGSLVWKFLQLSLGERLEICKKIGSKHNDIldefssmgfmisdkdKNVVLFMyqpearesngghrlikktdfhlgqhvntffkirckpssisdapgarsRFLTWYASLDGalgfflplpekNYRRLLMLQNVMVThtshtgglnprafrtykgkgyyagnpsrgiidGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEALSSHF
mgnfrshspsamDETIVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFrhpkgalklRFKKLKVLfvsdrskraneqpglprgvriSQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTstaepstdyykFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEvvpepgqpltkNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSlvardykptqpnskGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEaresngghrLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVThtshtgglnprAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDiealsshf
MGNFRSHSPSAMDETIVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHPKGAlklrfkklkvlfvSDRSKRANEQPGLPRGVRISQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEALSSHF
**************TIVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHPKGALKLRFKKLKVLFVS**************GVRISQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKP*****KGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEA***NGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIE******
*******************LLTVSLGLHGNRPLLLVRTQHELLIYQAFRHPKGALKLRFKKLKVL***********************MRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEP********************SRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQ***********LIKKTDFHLGQHVNTF********************LTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERL*****IGSKHNDILDELYDIEALSSHF
***********MDETIVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHPKGALKLRFKKLKVLFVSDRSKRANEQPGLPRGVRISQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEALSSHF
*********SAMDETIVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHPKGALKLRFKKLKVLFVSDR**********PRGVRISQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNG******TDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEALSSHF
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MGNFRSHSPSAMDETIVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHPKGALKLRFKKLKVLFVSDRSKRANEQPGLPRGVRISQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEALSSHF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query638 2.2.26 [Sep-21-2011]
Q105691444 Cleavage and polyadenylat yes N/A 0.909 0.401 0.484 0.0
Q9EPU41441 Cleavage and polyadenylat yes N/A 0.932 0.412 0.477 1e-180
Q105701443 Cleavage and polyadenylat yes N/A 0.913 0.404 0.483 1e-177
Q9V7261455 Cleavage and polyadenylat yes N/A 0.932 0.408 0.473 1e-172
A8XPU71454 Probable cleavage and pol N/A N/A 0.915 0.401 0.332 1e-101
Q9N4C21454 Probable cleavage and pol yes N/A 0.913 0.400 0.316 2e-99
Q7XWP11441 Probable cleavage and pol yes N/A 0.851 0.376 0.298 3e-73
Q9FGR01442 Cleavage and polyadenylat yes N/A 0.832 0.368 0.303 1e-70
O747331441 Protein cft1 OS=Schizosac yes N/A 0.882 0.390 0.290 3e-65
Q1E5B01387 Protein CFT1 OS=Coccidioi N/A N/A 0.863 0.397 0.284 6e-59
>sp|Q10569|CPSF1_BOVIN Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus GN=CPSF1 PE=1 SV=1 Back     alignment and function desciption
 Score =  634 bits (1635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/642 (48%), Positives = 415/642 (64%), Gaps = 62/642 (9%)

Query: 16   IVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHP----KGALKLRFKKL--------- 62
            +V+E+L V+LG    RP LLV    ELLIY+AF H     +G LK+RFKK+         
Sbjct: 846  LVKEVLLVALGSRQRRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKVPHNINFREK 905

Query: 63   -KVLFVSDRSKRANEQPGLPRGVRISQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRA 121
                        + E+   PRG R+++ RYF +I GY GVF+CGP P WL +T RG LR 
Sbjct: 906  KPKPSKKKAEGGSTEEGTGPRG-RVARFRYFEDIYGYSGVFICGPSPHWLLVTGRGALRL 964

Query: 122  HPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPH 181
            HPM IDGP+ + APFHN+NCPRGFLYFN + ELRISVLP +LSYDAPWPVRK+PL+CT H
Sbjct: 965  HPMGIDGPIDSFAPFHNINCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAH 1024

Query: 182  FLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFS 241
            ++AYH+E+K Y + TST+ P T   +  GE+KE  T  RD R++ P    F + L SP S
Sbjct: 1025 YVAYHVESKVYAVATSTSTPCTRVPRMTGEEKEFETIERDERYVHPQQEAFCIQLISPVS 1084

Query: 242  WEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFD 301
            WE IP     L EWEHV C+K VS+  E T+SGL+GY+A GT     E+VTCRGRIL+ D
Sbjct: 1085 WEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRGRILIMD 1144

Query: 302  IIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGI 361
            +IEVVPEPGQPLTKNK K++Y KEQKGPVTA+CH  G LV+A+GQKI++W L+ ++LTG+
Sbjct: 1145 VIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASELTGM 1204

Query: 362  AFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAG 421
            AFIDT++YI  M+SVKN IL  D  +SI+LLRYQ E +TLSLV+RD KP +  S  +   
Sbjct: 1205 AFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVD 1264

Query: 422  NPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMY 481
            N                                        + +GF++SD+D+N++++MY
Sbjct: 1265 N----------------------------------------AQLGFLVSDRDRNLMVYMY 1284

Query: 482  QPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARS-----RFLTWYASL 536
             PEA+ES GG RL+++ DFH+G HVNTF++  C+    ++ P  +S     + +TW+A+L
Sbjct: 1285 LPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCR--GAAEGPSKKSVVWENKHITWFATL 1342

Query: 537  DGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDG 596
            DG +G  LP+ EK YRRLLMLQN + T   H  GLNPRAFR          N  R ++DG
Sbjct: 1343 DGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRVLQNAVRNVLDG 1402

Query: 597  SLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEALSSHF 638
             L+ ++L LS  ER E+ KKIG+  + ILD+L + + +++HF
Sbjct: 1403 ELLNRYLYLSTMERGELAKKIGTTPDIILDDLLETDRVTAHF 1444
Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction.
Bos taurus (taxid: 9913)
>sp|Q9EPU4|CPSF1_MOUSE Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus GN=Cpsf1 PE=1 SV=1 Back     alignment and function description
>sp|Q10570|CPSF1_HUMAN Cleavage and polyadenylation specificity factor subunit 1 OS=Homo sapiens GN=CPSF1 PE=1 SV=2 Back     alignment and function description
>sp|Q9V726|CPSF1_DROME Cleavage and polyadenylation specificity factor subunit 1 OS=Drosophila melanogaster GN=Cpsf160 PE=1 SV=1 Back     alignment and function description
>sp|A8XPU7|CPSF1_CAEBR Probable cleavage and polyadenylation specificity factor subunit 1 OS=Caenorhabditis briggsae GN=cpsf-1 PE=3 SV=1 Back     alignment and function description
>sp|Q9N4C2|CPSF1_CAEEL Probable cleavage and polyadenylation specificity factor subunit 1 OS=Caenorhabditis elegans GN=cpsf-1 PE=3 SV=2 Back     alignment and function description
>sp|Q7XWP1|CPSF1_ORYSJ Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sativa subsp. japonica GN=Os04g0252200 PE=3 SV=2 Back     alignment and function description
>sp|Q9FGR0|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2 Back     alignment and function description
>sp|O74733|CFT1_SCHPO Protein cft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cft1 PE=3 SV=1 Back     alignment and function description
>sp|Q1E5B0|CFT1_COCIM Protein CFT1 OS=Coccidioides immitis (strain RS) GN=CFT1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query638
350413821 1417 PREDICTED: cleavage and polyadenylation 0.916 0.412 0.584 0.0
340710064 1417 PREDICTED: cleavage and polyadenylation 0.916 0.412 0.583 0.0
383863556 1415 PREDICTED: cleavage and polyadenylation 0.916 0.413 0.583 0.0
110750698 1415 PREDICTED: cleavage and polyadenylation 0.915 0.412 0.582 0.0
345482082 1415 PREDICTED: cleavage and polyadenylation 0.916 0.413 0.572 0.0
270003792 1392 hypothetical protein TcasGA2_TC003068 [T 0.929 0.426 0.567 0.0
91078626 1413 PREDICTED: similar to cleavage and polya 0.929 0.419 0.567 0.0
307190910 1418 Cleavage and polyadenylation specificity 0.916 0.412 0.575 0.0
307191845 1214 Cleavage and polyadenylation specificity 0.916 0.481 0.571 0.0
380014171 1583 PREDICTED: cleavage and polyadenylation 0.884 0.356 0.591 0.0
>gi|350413821|ref|XP_003490124.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/631 (58%), Positives = 459/631 (72%), Gaps = 46/631 (7%)

Query: 14   ETIVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHPKGALKLRFKKLK--VLFVSDRS 71
            E  V+E+L V+LG HGNRP+LLVR   EL IYQA+R+PKG LKLRFKKL   ++    R 
Sbjct: 827  EMQVREILMVALGHHGNRPMLLVRLDSELQIYQAYRYPKGHLKLRFKKLDHGIIPGQLRP 886

Query: 72   KRANEQPGLPRGVRISQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVS 131
            K  +E   +    R   MRYFSNIAGY GVF+C  +P W+FLT RGELR HPM IDGPV+
Sbjct: 887  KPRDEDIPMMNETRHCMMRYFSNIAGYNGVFICSDYPHWIFLTGRGELRTHPMGIDGPVT 946

Query: 132  TLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKT 191
            + APF+N+NCP+GFLYFN K ELRI VLPTHLSYDAPWPVRKVPL+CTPHF+ YHLE+KT
Sbjct: 947  SFAPFNNINCPQGFLYFNRKEELRICVLPTHLSYDAPWPVRKVPLRCTPHFVTYHLESKT 1006

Query: 192  YCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFSWEEIPQTNFP 251
            YC++TS AEP   YY+FNGEDKE   + R  RFI P   QF + LFSP SWE IP T   
Sbjct: 1007 YCVITSIAEPLKSYYRFNGEDKEFTEEERPERFIYPSQEQFSIVLFSPVSWETIPNTKIE 1066

Query: 252  LHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQ 311
            L +WEHV CLKNVS+ YEGT SGL+GYI LGTNYNY ED+T RGRIL+FDIIEVVPEPGQ
Sbjct: 1067 LDQWEHVTCLKNVSLAYEGTRSGLKGYIVLGTNYNYGEDITSRGRILIFDIIEVVPEPGQ 1126

Query: 312  PLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVYIA 371
            PLTKN+ K IYAKEQKGP+TAI  V+GFLV+AVGQKIYIWQLKDNDL G+AFIDT++YI 
Sbjct: 1127 PLTKNRFKQIYAKEQKGPITAITQVSGFLVSAVGQKIYIWQLKDNDLVGVAFIDTQIYIH 1186

Query: 372  SMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGS 431
             M+S+K+LIL+ D  +SI+LLR+Q EYRTLSLV+RD++P +  +  Y   N         
Sbjct: 1187 QMLSIKSLILIADVYKSISLLRFQEEYRTLSLVSRDFRPAEVYTIEYLIDN--------- 1237

Query: 432  LVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGG 491
                                           +++GF+++D + N+ LFMYQPE+RES GG
Sbjct: 1238 -------------------------------TNLGFLVADGESNMALFMYQPESRESLGG 1266

Query: 492  HRLIKKTDFHLGQHVNTFFKIRCKPSSISDA----PGARSRFLTWYASLDGALGFFLPLP 547
             +LI+K DFHLGQ VNTFF+I+C+ S  ++      GA  R +T YASLDG+LG+ LP+P
Sbjct: 1267 QKLIRKADFHLGQKVNTFFRIKCRVSDPANDKKHFSGADKRHVTMYASLDGSLGYILPVP 1326

Query: 548  EKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSL 607
            EK YRRLLMLQNV+VTH  H  GLNP+A+RTYK      GNP+RGIIDG LVW++L L  
Sbjct: 1327 EKTYRRLLMLQNVLVTHICHIAGLNPKAYRTYKSHIRTQGNPARGIIDGDLVWRYLYLPN 1386

Query: 608  GERLEICKKIGSKHNDILDELYDIEALSSHF 638
             E++++ KKIG++  +I+++L +I+  ++HF
Sbjct: 1387 NEKIDVAKKIGTRVQEIIEDLTEIDRQTAHF 1417

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340710064|ref|XP_003393618.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383863556|ref|XP_003707246.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|110750698|ref|XP_624382.2| PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|345482082|ref|XP_001607052.2| PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|270003792|gb|EFA00240.1| hypothetical protein TcasGA2_TC003068 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|91078626|ref|XP_968117.1| PREDICTED: similar to cleavage and polyadenylation specificity factor cpsf [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307190910|gb|EFN74734.1| Cleavage and polyadenylation specificity factor subunit 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|307191845|gb|EFN75271.1| Cleavage and polyadenylation specificity factor subunit 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|380014171|ref|XP_003691113.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query638
ZFIN|ZDB-GENE-040709-21451 cpsf1 "cleavage and polyadenyl 0.652 0.286 0.536 6.4e-166
UNIPROTKB|F1RSN81108 CPSF1 "Uncharacterized protein 0.669 0.385 0.528 3.5e-165
UNIPROTKB|K7GNU1757 CPSF1 "Uncharacterized protein 0.669 0.564 0.528 3.5e-165
UNIPROTKB|Q105691444 CPSF1 "Cleavage and polyadenyl 0.667 0.295 0.520 2.5e-164
UNIPROTKB|F1PC281398 CPSF1 "Uncharacterized protein 0.647 0.295 0.537 5.1e-164
UNIPROTKB|J9P4181107 CPSF1 "Uncharacterized protein 0.647 0.373 0.537 5.1e-164
UNIPROTKB|Q105701443 CPSF1 "Cleavage and polyadenyl 0.669 0.295 0.526 1.4e-163
MGI|MGI:26797221441 Cpsf1 "cleavage and polyadenyl 0.667 0.295 0.520 1.4e-163
FB|FBgn00246981455 Cpsf160 "Cleavage and polyaden 0.658 0.288 0.504 1.4e-159
RGD|13064061386 Cpsf1 "cleavage and polyadenyl 0.609 0.280 0.418 3.6e-118
ZFIN|ZDB-GENE-040709-2 cpsf1 "cleavage and polyadenylation specific factor 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 1220 (434.5 bits), Expect = 6.4e-166, Sum P(2) = 6.4e-166
 Identities = 230/429 (53%), Positives = 302/429 (70%)

Query:    13 DETIVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHPKGAXXXXXXXXXXXXXSD--- 69
             D  +V+E+  VSLG + +RP LL   + ELLIY+AF + +                +   
Sbjct:   850 DIPLVKEVALVSLGYNHSRPYLLAHVEQELLIYEAFPYDQQQAQSNLKVRFKKMPHNINY 909

Query:    70 RSK----RANEQP-GLPR---GV--RISQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGEL 119
             R K    R +++P G      GV  R+++ RYF +I+GY GVF+CGP P W+ +TSRG +
Sbjct:   910 REKKVKVRKDKKPEGQGEDTLGVKGRVARFRYFQDISGYSGVFICGPSPHWMLVTSRGAM 969

Query:   120 RAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCT 179
             R HPMTIDG + + +PFHN+NCP+GFLYFN + ELRISVLPT+LSYDAPWPVRK+PL+CT
Sbjct:   970 RLHPMTIDGAIESFSPFHNINCPKGFLYFNKQGELRISVLPTYLSYDAPWPVRKIPLRCT 1029

Query:   180 PHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSP 239
              H+++YH+E+K Y + TS  EP T   +  GE+KE  T  RD R+I P   +F + L SP
Sbjct:  1030 VHYVSYHVESKVYAVCTSVKEPCTRIPRMTGEEKEFETIERDERYIHPQQDKFSIQLISP 1089

Query:   240 FSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILL 299
              SWE IP T   L EWEHV C+K V+++ + T+SGL+GY+ALGT     E+VTCRGRIL+
Sbjct:  1090 VSWEAIPNTRVDLEEWEHVTCMKTVALKSQETVSGLKGYVALGTCLMQGEEVTCRGRILI 1149

Query:   300 FDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLT 359
              D+IEVVPEPGQPLTKNK K++Y KEQKGPVTA+CH +GFLV+A+GQKI++W LKDNDLT
Sbjct:  1150 LDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCSGFLVSAIGQKIFLWSLKDNDLT 1209

Query:   360 GIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYY 419
             G+AFIDT++YI  M S+KN IL  D  +SI+LLRYQPE +TLSLV+RD KP +  S  + 
Sbjct:  1210 GMAFIDTQLYIHQMYSIKNFILAADVMKSISLLRYQPESKTLSLVSRDAKPLEVYSIEFM 1269

Query:   420 AGNPSRGII 428
               N   G +
Sbjct:  1270 VDNNQLGFL 1278
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0006378 "mRNA polyadenylation" evidence=IMP
GO:0060216 "definitive hemopoiesis" evidence=IMP
UNIPROTKB|F1RSN8 CPSF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|K7GNU1 CPSF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q10569 CPSF1 "Cleavage and polyadenylation specificity factor subunit 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PC28 CPSF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P418 CPSF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q10570 CPSF1 "Cleavage and polyadenylation specificity factor subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2679722 Cpsf1 "cleavage and polyadenylation specific factor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0024698 Cpsf160 "Cleavage and polyadenylation specificity factor 160" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1306406 Cpsf1 "cleavage and polyadenylation specific factor 1, 160kDa" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query638
pfam03178318 pfam03178, CPSF_A, CPSF A subunit region 1e-86
COG51611319 COG5161, SFT1, Pre-mRNA cleavage and polyadenylati 2e-64
>gnl|CDD|217409 pfam03178, CPSF_A, CPSF A subunit region Back     alignment and domain information 
 Score =  272 bits (699), Expect = 1e-86
 Identities = 116/377 (30%), Positives = 175/377 (46%), Gaps = 64/377 (16%)

Query: 231 QFHVSLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSED 290
              + L  P +WE I      L E E VL +K+V++E      G + Y+ +GT ++  ED
Sbjct: 1   ASCIRLVDPITWEVI--DTLELEENEAVLSVKSVNLEDSE---GRKEYLVVGTAFDLGED 55

Query: 291 VTCR-GRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIY 349
              R GRI +F+IIE         T  K+K+++  E KG VTA+C   G L+   GQK+ 
Sbjct: 56  PAARSGRIYVFEIIEPE-------TNRKLKLVHKTEVKGAVTALCEFQGRLLAGQGQKLR 108

Query: 350 IWQLKDNDLTGIAFIDT-EVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDY 408
           ++ L  + L   AF+DT   Y+ S+    N I+VGD  +S+  L Y  E   L L ARD 
Sbjct: 109 VYDLGKDKLLPKAFLDTPITYVVSLKVFGNRIIVGDLMKSVTFLGYDEEPYRLILFARDT 168

Query: 409 KPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFM 468
           +P    +                                         + L ++ +   +
Sbjct: 169 QPRWVTA----------------------------------------AEFLVDYDT--IL 186

Query: 469 ISDKDKNVVLFMYQPEARESNGGH-RLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARS 527
            +DK  N+ +  Y PEA ES  G  RL+ + +FHLG  V +F K    P   +    + S
Sbjct: 187 GADKFGNLHVLRYDPEAPESLDGDPRLLHRAEFHLGDIVTSFQKGSLVPK--TGGAESTS 244

Query: 528 RFLTWYASLDGALGFFLP-LPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYA 586
                Y +LDG++G  +P + E+ YRRL  LQ  +     H  GL+PRAFR+Y  +    
Sbjct: 245 SPQILYGTLDGSIGLLVPFISEEEYRRLQHLQQQLRDELPHLCGLDPRAFRSYYSRSP-- 302

Query: 587 GNPSRGIIDGSLVWKFL 603
             P + +IDG L+ +FL
Sbjct: 303 --PVKNVIDGDLLERFL 317

This family includes a region that lies towards the C-terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs. The function of the aligned region is unknown but may be involved in RNA/DNA binding. Length = 318
>gnl|CDD|227490 COG5161, SFT1, Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 638
KOG1896|consensus1366 100.0
KOG1897|consensus1096 100.0
COG51611319 SFT1 Pre-mRNA cleavage and polyadenylation specifi 100.0
KOG1898|consensus1205 100.0
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 100.0
KOG0318|consensus603 97.61
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 97.24
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 97.18
PRK11028330 6-phosphogluconolactonase; Provisional 97.14
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 97.04
KOG1539|consensus 910 96.87
KOG1036|consensus323 96.48
KOG0291|consensus 893 96.41
KOG1539|consensus 910 96.33
PLN00181793 protein SPA1-RELATED; Provisional 96.22
KOG1273|consensus405 96.11
KOG1274|consensus 933 96.05
KOG2110|consensus391 95.62
KOG0650|consensus733 95.58
KOG1446|consensus311 95.17
PTZ00420 568 coronin; Provisional 94.0
KOG0318|consensus603 93.98
PRK11028330 6-phosphogluconolactonase; Provisional 93.9
KOG0283|consensus712 93.87
KOG0278|consensus334 93.42
KOG1897|consensus1096 93.38
KOG0306|consensus 888 93.37
KOG0296|consensus399 93.28
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 93.18
KOG0646|consensus476 92.92
PLN00181793 protein SPA1-RELATED; Provisional 92.74
PF14727418 PHTB1_N: PTHB1 N-terminus 92.62
KOG0263|consensus707 92.6
KOG2106|consensus626 92.58
KOG3881|consensus412 92.34
KOG2111|consensus346 92.32
KOG0283|consensus712 91.87
KOG0647|consensus347 91.74
KOG0289|consensus506 91.47
KOG0282|consensus503 90.98
KOG0646|consensus476 90.89
KOG1273|consensus405 90.59
KOG0266|consensus456 90.56
KOG2321|consensus 703 90.46
KOG2096|consensus420 90.23
KOG0276|consensus 794 89.88
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 89.81
KOG1034|consensus385 89.66
KOG0305|consensus484 89.65
PTZ00420568 coronin; Provisional 89.01
PTZ00421493 coronin; Provisional 88.68
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 88.1
KOG4378|consensus 673 88.09
KOG2111|consensus346 88.06
KOG0282|consensus503 87.94
KOG0299|consensus479 87.58
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 87.33
KOG3881|consensus412 87.25
KOG0315|consensus311 87.23
KOG0647|consensus347 86.97
KOG0315|consensus311 86.74
KOG1517|consensus1387 86.39
KOG0306|consensus888 85.89
KOG2919|consensus406 85.6
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 84.83
KOG0290|consensus364 84.33
KOG0649|consensus325 84.17
KOG2110|consensus391 84.07
KOG0275|consensus508 83.77
KOG0772|consensus641 83.12
PF14761215 HPS3_N: Hermansky-Pudlak syndrome 3 82.9
PF15390 671 DUF4613: Domain of unknown function (DUF4613) 82.65
KOG0278|consensus334 82.51
KOG0285|consensus460 82.25
KOG2106|consensus626 81.73
KOG1898|consensus1205 81.29
KOG0277|consensus311 81.05
KOG4378|consensus673 81.0
KOG0288|consensus459 80.73
KOG1274|consensus 933 80.71
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 80.17
>KOG1896|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.6e-107  Score=917.36  Aligned_cols=573  Identities=45%  Similarity=0.782  Sum_probs=524.0

Q ss_pred             cceEEEeeecccCC--CCceEEEEEEC-CcEEEEEEEe-cCCCCceeeEEEeccccccc--cC-----Cc--cCCCCCCC
Q psy92            15 TIVQELLTVSLGLH--GNRPLLLVRTQ-HELLIYQAFR-HPKGALKLRFKKLKVLFVSD--RS-----KR--ANEQPGLP   81 (638)
Q Consensus        15 ~~~~eil~~~lg~~--~~~p~L~~~~~-~~l~~Y~~~~-~~~~~~~~rf~kv~~~~~~~--~~-----~~--~~~~~~~~   81 (638)
                      +.+++++...||..  ..+|||++.+. +++++|++|+ .+.+++.++||||++.....  +|     +.  +..+++..
T Consensus       778 ~~l~q~~~~~L~~e~~~~e~~L~lv~~~~eil~Ykaf~~~~~~~~~~~f~kvp~~~~~~~~~p~~~~~~~~~~~~e~~~~  857 (1366)
T KOG1896|consen  778 LELKQLFVNPLGSEIVFKEPHLFLVVSDNEILIYKAFPQLSQGNLKVFFKKVPHNLNIRTDKPHFLCKKREGGGAEEGAS  857 (1366)
T ss_pred             hHHHHhhccccchhhhccCCceEEEEeCceEEEEeeccccCccchhhhhhhCCHhhcccccCCcccchhhcccccccccc
Confidence            57888999999988  67888887775 5999999994 56778999999999754331  22     11  23444466


Q ss_pred             CcceeeeEEEeeecCCceeEEecCCCCeEEEEecCCceEEEecCCCCCccEEecccCCCCCCcEEEEEcCCeEEEEEeCC
Q psy92            82 RGVRISQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPT  161 (638)
Q Consensus        82 ~~~~~~~l~~f~~~~g~~~Vf~~g~~P~~i~~~~~~~l~~~pl~~~~~v~~~a~F~~~~~~~gfl~~~~~~~L~I~~l~~  161 (638)
                      .+....+|++|++++|+++||+||++|+||+.+.+|.+++||+-.+++|.++||||+++||+||+|++.++.|+||.++.
T Consensus       858 ~~~~~~~m~~f~~i~ghsgvfv~Gs~P~~il~t~rg~lr~h~~~gngpv~sfapfhnvn~p~gfiyvd~~~~l~i~~lp~  937 (1366)
T KOG1896|consen  858 VSVIVQRMTYFEDIGGHSGVFVTGSKPYLILLTFRGVLRFHPVFGNGPVGSFAPFHNVNCPRGFIYVDRQGELVICVLPE  937 (1366)
T ss_pred             ccceeeeEEeeccccCeeEEEEecCCceEEEEEcccccceeeeecCCcceeeeeeeccCCCcceEEECCCceEEEEEcch
Confidence            66778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeEEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccccccCCCCCCCCCCCcccccEEEEEeCCC
Q psy92           162 HLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDKELVTDPRDSRFIPPLVSQFHVSLFSPFS  241 (638)
Q Consensus       162 ~~~~~~~~~~r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~e~~~~~~~~~~~~p~~~~~~i~lid~~t  241 (638)
                      ...||++||+|+|||++|||+++||++.+.|+|+++.+.++   +.+ ++|++.+....+++...|..++++|+|++|.+
T Consensus       938 ~~~Ydn~wPvkkIpl~~T~~~vvYh~e~~vy~v~t~~~~~~---~~~-~~d~~e~~~~~de~~~~p~~~~f~i~LisP~s 1013 (1366)
T KOG1896|consen  938 ALSYDNKWPVKKIPLRKTPHQVVYHYEKKVYAVITSTPVPY---ERL-GEDGEEEVISRDENVIHPEGEQFSIQLISPES 1013 (1366)
T ss_pred             hcccCCCCcccccccccchhheeeeccceEEEEEEecccee---eec-ccccccccccccccccccccccceeEEecCCc
Confidence            99999999999999999999999999999999999876443   344 34444455677889999999999999999999


Q ss_pred             ceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEE
Q psy92           242 WEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMI  321 (638)
Q Consensus       242 ~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~  321 (638)
                      |++++  .++|++||+|++|+.+.|..+++++++++||+|||++..|||.++|||+++|+|++||||||+|.|++|||.+
T Consensus      1014 w~vi~--~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel 1091 (1366)
T KOG1896|consen 1014 WEVID--KIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKEL 1091 (1366)
T ss_pred             ccccc--ccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeee
Confidence            99999  6999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCceEEEccccCeeEEEecCEEEEEEe-eCCceeeeEEeecceeEEEEeeecCEEEEeeccCcEEEEEEeccCCe
Q psy92           322 YAKEQKGPVTAICHVAGFLVTAVGQKIYIWQL-KDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRT  400 (638)
Q Consensus       322 ~~~~~~G~V~al~~~~g~Ll~avg~~l~v~~l-~~~~L~~~a~~d~~~~i~~i~~~~~~IlvgD~~~Sv~ll~~~~~~~~  400 (638)
                      +++|+||+|.++|+++|+|+.++||||++|+| ++..|.++||+|++.|+++++++||+|++||+|||++|++|++++++
T Consensus      1092 ~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~r 1171 (1366)
T KOG1896|consen 1092 YIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYR 1171 (1366)
T ss_pred             ehhhcccceEEEEEeccEEEEccCcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceE
Confidence            99999999999999999999999999999999 57889999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEEEeCCCcEEEEE
Q psy92           401 LSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFM  480 (638)
Q Consensus       401 l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~aD~~~nl~v~~  480 (638)
                      |++++||..++++++++||        +|                                +.+|+|+++|+++||++|.
T Consensus      1172 lsL~srd~~~l~v~s~EFL--------Vd--------------------------------g~~L~flvsDa~rNi~vy~ 1211 (1366)
T KOG1896|consen 1172 LSLLSRDFEPLNVYSTEFL--------VD--------------------------------GSNLSFLVSDADRNIHVYM 1211 (1366)
T ss_pred             EEEeecCCchhhceeeeeE--------Ec--------------------------------CCeeEEEEEcCCCcEEEEE
Confidence            9999999999999999999        99                                8889999999999999999


Q ss_pred             eCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEE--EEEeCCCcEEEEEeCChhhHHHHHHHH
Q psy92           481 YQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLT--WYASLDGALGFFLPLPEKNYRRLLMLQ  558 (638)
Q Consensus       481 ~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~i--l~~t~~GsIg~l~pl~~~~~~~L~~Lq  558 (638)
                      |+|++++|++|+||.++++||+|..|++|.+.++++...--    ..++..  +++|+||++|+++||+|+.||||..||
T Consensus      1212 Y~Pe~~eS~~G~RLv~radfhvg~~vs~m~~lp~~~~~e~~----~~~~~~~~v~gtlDG~l~~~~Pl~e~~YRRL~~lQ 1287 (1366)
T KOG1896|consen 1212 YAPENIESLSGQRLVRRADFHVGAHVSTMFRLPCHQNAEFG----SNSPMFYEVFGTLDGGLGHLVPLDEKTYRRLLMLQ 1287 (1366)
T ss_pred             eCCCCccccCcceeeeeeeeEeccceeeeEeccccccchhc----cCCchhhhhhcccCCceeEEecCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999865322100    012334  489999999999999999999999999


Q ss_pred             HHHHhccCCCCCCCccccccccCCCcccCCCCcceeehHHHHHHHcCCHHHHHHHHHHhCCCHHHHHHHHHHhhhccCCC
Q psy92           559 NVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEALSSHF  638 (638)
Q Consensus       559 ~~l~~~~~~~~gl~p~~~R~~~~~~~~~~~p~~~~IDGdlle~fl~L~~~~q~~ia~~lg~~~~~i~~~l~~l~~~~~~~  638 (638)
                      ++|.++++|+|||||++||..+... +..+|.|.+|||+||.+|..|+.++|.++|+++|+++.+|+++|.+|.+++++|
T Consensus      1288 n~L~~~~~hv~GLNPr~yR~~~s~~-~~~n~~r~ilDg~ll~~f~yl~~~er~elA~kiGt~~~eIl~DLvel~~~~s~~ 1366 (1366)
T KOG1896|consen 1288 NALMDRLPHVGGLNPRAYRLLDSSL-QLSNSLRSILDGELLNRFSYLSMSEREELAHKIGTTRKEILDDLVELDRLTSSL 1366 (1366)
T ss_pred             HHHHHhhhhhcCCCHHHhhhccchh-hhcCCCcccchHhHHHHhhccchhhHHHHHHhcCCCHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999988776 447899999999999999999999999999999999999999999999999986

>KOG1897|consensus Back     alignment and domain information
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] Back     alignment and domain information
>KOG1898|consensus Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>KOG0318|consensus Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG1539|consensus Back     alignment and domain information
>KOG1036|consensus Back     alignment and domain information
>KOG0291|consensus Back     alignment and domain information
>KOG1539|consensus Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG1273|consensus Back     alignment and domain information
>KOG1274|consensus Back     alignment and domain information
>KOG2110|consensus Back     alignment and domain information
>KOG0650|consensus Back     alignment and domain information
>KOG1446|consensus Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0318|consensus Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0283|consensus Back     alignment and domain information
>KOG0278|consensus Back     alignment and domain information
>KOG1897|consensus Back     alignment and domain information
>KOG0306|consensus Back     alignment and domain information
>KOG0296|consensus Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>KOG0646|consensus Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>KOG0263|consensus Back     alignment and domain information
>KOG2106|consensus Back     alignment and domain information
>KOG3881|consensus Back     alignment and domain information
>KOG2111|consensus Back     alignment and domain information
>KOG0283|consensus Back     alignment and domain information
>KOG0647|consensus Back     alignment and domain information
>KOG0289|consensus Back     alignment and domain information
>KOG0282|consensus Back     alignment and domain information
>KOG0646|consensus Back     alignment and domain information
>KOG1273|consensus Back     alignment and domain information
>KOG0266|consensus Back     alignment and domain information
>KOG2321|consensus Back     alignment and domain information
>KOG2096|consensus Back     alignment and domain information
>KOG0276|consensus Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG1034|consensus Back     alignment and domain information
>KOG0305|consensus Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4378|consensus Back     alignment and domain information
>KOG2111|consensus Back     alignment and domain information
>KOG0282|consensus Back     alignment and domain information
>KOG0299|consensus Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG3881|consensus Back     alignment and domain information
>KOG0315|consensus Back     alignment and domain information
>KOG0647|consensus Back     alignment and domain information
>KOG0315|consensus Back     alignment and domain information
>KOG1517|consensus Back     alignment and domain information
>KOG0306|consensus Back     alignment and domain information
>KOG2919|consensus Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG0290|consensus Back     alignment and domain information
>KOG0649|consensus Back     alignment and domain information
>KOG2110|consensus Back     alignment and domain information
>KOG0275|consensus Back     alignment and domain information
>KOG0772|consensus Back     alignment and domain information
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 Back     alignment and domain information
>PF15390 DUF4613: Domain of unknown function (DUF4613) Back     alignment and domain information
>KOG0278|consensus Back     alignment and domain information
>KOG0285|consensus Back     alignment and domain information
>KOG2106|consensus Back     alignment and domain information
>KOG1898|consensus Back     alignment and domain information
>KOG0277|consensus Back     alignment and domain information
>KOG4378|consensus Back     alignment and domain information
>KOG0288|consensus Back     alignment and domain information
>KOG1274|consensus Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query638
3ei4_A1158 Structure Of The Hsddb1-Hsddb2 Complex Length = 115 2e-10
2b5l_A1140 Crystal Structure Of Ddb1 In Complex With Simian Vi 2e-10
3i7h_A1143 Crystal Structure Of Ddb1 In Complex With The H-Box 2e-10
3ei1_A1158 Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Pho 4e-10
4a0a_A1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 4e-10
4a0l_A1144 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 4e-10
4a0b_A1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 4e-10
4a08_A1159 Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Dup 4e-10
3e0c_A1140 Crystal Structure Of Dna Damage-Binding Protein 1(D 4e-10
4e54_A1150 Damaged Dna Induced Uv-Damaged Dna-Binding Protein 4e-10
4a11_A1159 Structure Of The Hsddb1-Hscsa Complex Length = 1159 4e-10
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex Length = 1158 Back     alignment and structure 
Iteration: 1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 141/368 (38%), Gaps = 77/368 (20%)
Query: 278  YIALGTNYNYSEDVTCR-GRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICHV 336
            Y  +GT   Y E+   + GRI++F             +  K++ +  KE KG V ++   
Sbjct: 846  YFIVGTAMVYPEEAEPKQGRIVVFQ-----------YSDGKLQTVAEKEVKGAVYSMVEF 894
Query: 337  AGFLVTAVGQ--KIYIWQLKDNDLTGIAFIDTEVYIASMVSVKNLILVGDYARSIALLRY 394
             G L+ ++    ++Y W  + +  T     +  +    + +  + ILVGD  RS+ LL Y
Sbjct: 895  NGKLLASINSTVRLYEWTTEKDVRTECNHYNN-IMALYLKTKGDFILVGDLMRSVLLLAY 953
Query: 395  QPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSK 454
            +P       +ARD+ P                       W                    
Sbjct: 954  KPMEGNFEEIARDFNPN----------------------WM------------------S 973
Query: 455  HNDILDEFSSMGFMISDKDKNVVLFMYQPEARESNGGHR--LIKKTDFHLGQHVNTFFKI 512
              +ILD+ + +G      +    LF+ Q ++  +    R  L +   FHLG+ VN F   
Sbjct: 974  AVEILDDDNFLG-----AENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVF--- 1025
Query: 513  RCKPSSISDAPGARS---RFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTG 569
             C  S +    G  S   +    + +++G +G    L E  Y  LL +QN +       G
Sbjct: 1026 -CHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVG 1084
Query: 570  GLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKI------GSKHND 623
             +    +R++  +      P+ G IDG L+  FL +S  +  E+   +      G K   
Sbjct: 1085 KIEHSFWRSFHTE--RKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREA 1142
Query: 624  ILDELYDI 631
              D+L  +
Sbjct: 1143 TADDLIKV 1150
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V Protein Length = 1140 Back     alignment and structure
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of Hbx Length = 1143 Back     alignment and structure
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct Containing Dna-Duplex Length = 1158 Back     alignment and structure
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3) Length = 1159 Back     alignment and structure
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 1144 Back     alignment and structure
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4) Length = 1159 Back     alignment and structure
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex ( Purine At D-1 Position) At 3.0 A Resolution (Cpd 1) Length = 1159 Back     alignment and structure
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1) Length = 1140 Back     alignment and structure
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 1150 Back     alignment and structure
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex Length = 1159 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query638
3ei3_A1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 7e-85
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Length = 1158 Back     alignment and structure
 Score =  287 bits (735), Expect = 7e-85
 Identities = 99/570 (17%), Positives = 198/570 (34%), Gaps = 90/570 (15%)

Query: 83   GVRISQMRYFSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCP 142
            G + + +R F +++    VF C   P  +  +S  +L    + +   V+ + P ++   P
Sbjct: 650  GTQPTVLRTFRSLSTT-NVFACSDRP-TVIYSSNHKLVFSNVNLK-EVNYMCPLNSDGYP 706

Query: 143  RGFLYFNAKSELRISVLPTHLSYDAPWPVRKVPLKCTPHFLAYHLETKTYCIVTSTAEPS 202
                  N  S L I      +       +R VPL  +P  + Y   ++ + +++S  E  
Sbjct: 707  DSLALAN-NSTLTIG----TIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQ 761

Query: 203  TDYYKFNGEDKELVTDPRD----------------SRFIPPLVSQFHVSLFSPFSWEEIP 246
                          T                           V   ++ +    ++E + 
Sbjct: 762  DTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLH 821

Query: 247  QTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYSEDVTC-RGRILLFDIIEV 305
                   + E+ L L +  +  +        Y  +GT   Y E+    +GRI++F     
Sbjct: 822  A--HQFLQNEYALSLVSCKLGKDPNT-----YFIVGTAMVYPEEAEPKQGRIVVFQY--- 871

Query: 306  VPEPGQPLTKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQL-KDNDLTGIAFI 364
                    +  K++ +  KE KG V ++    G L+ ++   + +++   + +L      
Sbjct: 872  --------SDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNH 923

Query: 365  DTEVYIASMVSVKNLILVGDYARSIALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPS 424
               +    + +  + ILVGD  RS+ LL Y+P       +ARD+ P   ++         
Sbjct: 924  YNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSA--------- 974

Query: 425  RGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMISDKDKNVVLFMYQPE 484
                                            +ILD+ + +G    +   N+ +      
Sbjct: 975  -------------------------------VEILDDDNFLGA---ENAFNLFVCQKDSA 1000

Query: 485  ARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFL 544
            A        L +   FHLG+ VN F        ++ +     ++    + +++G +G   
Sbjct: 1001 ATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTP-TQGSVLFGTVNGMIGLVT 1059

Query: 545  PLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQ 604
             L E  Y  LL +QN +       G +    +R++         P+ G IDG L+  FL 
Sbjct: 1060 SLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSF--HTERKTEPATGFIDGDLIESFLD 1117

Query: 605  LSLGERLEICKKIGSKHNDILDELYDIEAL 634
            +S  +  E+   +       +      + L
Sbjct: 1118 ISRPKMQEVVANLQYDDGSGMKREATADDL 1147
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query638
3ei3_A1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 100.0
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 98.31
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 98.01
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 97.97
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 97.74
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 97.62
3jrp_A379 Fusion protein of protein transport protein SEC13 97.56
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 97.54
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 97.53
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 97.49
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 97.43
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 97.41
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 97.38
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 97.37
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 97.37
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 97.33
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 97.29
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 97.26
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 97.23
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 97.22
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 97.22
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 97.22
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.18
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 97.15
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.14
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 97.11
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 97.11
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 97.09
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 97.08
3jrp_A379 Fusion protein of protein transport protein SEC13 97.06
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 97.03
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 97.0
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 97.0
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 97.0
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 96.97
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 96.94
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 96.93
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 96.91
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 96.9
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 96.89
4g56_B357 MGC81050 protein; protein arginine methyltransfera 96.89
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.74
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.71
3jro_A 753 Fusion protein of protein transport protein SEC13 96.68
3ow8_A321 WD repeat-containing protein 61; structural genomi 96.67
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 96.67
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 96.66
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 96.59
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 96.57
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 96.56
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 96.53
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 96.52
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 96.48
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 96.48
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 96.45
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 96.44
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 96.43
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 96.42
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 96.4
2xyi_A430 Probable histone-binding protein CAF1; transcripti 96.31
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 96.29
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 96.28
1pgu_A 615 Actin interacting protein 1; WD repeat, seven-blad 96.27
4g56_B357 MGC81050 protein; protein arginine methyltransfera 96.19
2xyi_A430 Probable histone-binding protein CAF1; transcripti 96.19
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 96.17
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 96.14
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 96.13
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 96.13
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 96.1
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 96.1
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 96.07
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 96.07
2ymu_A577 WD-40 repeat protein; unknown function, two domain 96.06
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 96.04
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 96.0
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 96.0
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 95.95
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 95.95
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 95.93
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 95.88
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 95.8
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 95.76
3jro_A 753 Fusion protein of protein transport protein SEC13 95.73
2ymu_A577 WD-40 repeat protein; unknown function, two domain 95.71
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 95.64
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 95.49
4e54_B435 DNA damage-binding protein 2; beta barrel, double 95.46
2oaj_A 902 Protein SNI1; WD40 repeat, beta propeller, endocyt 95.43
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 95.39
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 95.36
3ow8_A321 WD repeat-containing protein 61; structural genomi 95.34
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 95.31
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 95.31
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 95.18
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 95.05
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 95.02
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 95.02
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 94.97
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 94.94
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 94.92
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 94.85
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 94.73
3ei3_A1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 94.63
4e54_B435 DNA damage-binding protein 2; beta barrel, double 94.59
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 94.55
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 94.22
2oaj_A 902 Protein SNI1; WD40 repeat, beta propeller, endocyt 94.18
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 94.07
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 94.06
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 94.06
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 94.01
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 94.0
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 94.0
2pm7_B297 Protein transport protein SEC13, protein transport 93.76
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 93.65
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 93.63
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 93.51
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 93.49
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 93.49
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 93.4
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 93.35
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 93.27
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 93.12
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 92.36
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 91.89
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 91.78
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 91.68
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 91.57
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 91.11
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 90.27
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 89.93
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 89.36
2pm7_B297 Protein transport protein SEC13, protein transport 89.03
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 88.47
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 87.53
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 87.24
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 87.02
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 86.83
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 85.72
2oit_A434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 85.52
1xip_A388 Nucleoporin NUP159; beta-propeller, transport prot 85.36
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 84.99
2j04_A588 TAU60, YPL007P, hypothetical protein YPL007C; beta 83.44
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 83.26
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 83.15
2j04_A588 TAU60, YPL007P, hypothetical protein YPL007C; beta 82.57
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 81.83
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 80.11
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
Probab=100.00  E-value=1.7e-83  Score=778.05  Aligned_cols=525  Identities=21%  Similarity=0.355  Sum_probs=441.7

Q ss_pred             CCccceEEEeeecccCCCCceEEEEEECCcEEEEEEEecCCCCceeeEEEeccccccccCCccCCCCCCCCcceeeeEEE
Q psy92            12 MDETIVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHPKGALKLRFKKLKVLFVSDRSKRANEQPGLPRGVRISQMRY   91 (638)
Q Consensus        12 ~~~~~~~eil~~~lg~~~~~p~L~~~~~~~l~~Y~~~~~~~~~~~~rf~kv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   91 (638)
                      +++..|++|+++.++   +.|||++.++|+.++|..+....|.+..+ |+..                  +|++|..|++
T Consensus       601 ~~~~~p~si~l~~~~---~~~~L~igl~dG~l~~~~~d~~tg~l~d~-r~~~------------------LG~~pv~L~~  658 (1158)
T 3ei3_A          601 GGEIIPRSILMTTFE---SSHYLLCALGDGALFYFGLNIETGLLSDR-KKVT------------------LGTQPTVLRT  658 (1158)
T ss_dssp             CSSCCEEEEEEEEET---TEEEEEEEETTSEEEEEEECTTTCCEEEE-EEEE------------------CCSSCCEEEE
T ss_pred             CCCCCCcEEEEEEeC---CCcEEEEEeCCCeEEEEEEcCCCCccccc-eeEE------------------cCCCceEEEE
Confidence            345689999999994   67999999999888888886656666555 4432                  6788999999


Q ss_pred             eeecCCceeEEecCCCCeEEEEecCCceEEEecCCCCCccEEecccCCCCCCcEEEEEcCCeEEEEEeCCCCCCCCCcee
Q psy92            92 FSNIAGYQGVFLCGPHPAWLFLTSRGELRAHPMTIDGPVSTLAPFHNVNCPRGFLYFNAKSELRISVLPTHLSYDAPWPV  171 (638)
Q Consensus        92 f~~~~g~~~Vf~~g~~P~~i~~~~~~~l~~~pl~~~~~v~~~a~F~~~~~~~gfl~~~~~~~L~I~~l~~~~~~~~~~~~  171 (638)
                      |.+. |..+||+||++|.|++++ ++++.++|++. .++.++|||++++||+|++++ ++++|+|+++++.+    +|++
T Consensus       659 ~~~~-~~~~V~a~s~rp~liy~~-~~~l~~s~l~~-~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~----~~~~  730 (1158)
T 3ei3_A          659 FRSL-STTNVFACSDRPTVIYSS-NHKLVFSNVNL-KEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQ----KLHI  730 (1158)
T ss_dssp             EESS-SCEEEEEESSSCEEEEES-SSSEEEEEBSS-SCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSS----SEEE
T ss_pred             EeeC-CceeEEEECCCCEEEEEc-CCceEEeccCh-HHhceEeccCcccCCCcEEEE-cCCceEEEEecccC----CeeE
Confidence            9976 458999999999666555 69999999986 479999999999999999987 67889999999853    7999


Q ss_pred             EEEeCCCcccEEEEecCCCEEEEEEeeecCCCcccccCCccc---------c--------ccCCCCCCCCCCCcccccEE
Q psy92           172 RKVPLKCTPHFLAYHLETKTYCIVTSTAEPSTDYYKFNGEDK---------E--------LVTDPRDSRFIPPLVSQFHV  234 (638)
Q Consensus       172 r~ipL~~tp~ri~y~~~~~~~~V~~s~~~~~~~~~~~~~e~~---------e--------~~~~~~~~~~~~p~~~~~~i  234 (638)
                      |+|||++|||||+|||++++|+|++++.+++........+..         .        .....++..++ +...++++
T Consensus       731 ~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~s~i  809 (1158)
T 3ei3_A          731 RTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFG-EEVEVHNL  809 (1158)
T ss_dssp             EEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CC-CEEEEEEE
T ss_pred             EEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcC-CceeeEEE
Confidence            999999999999999999999999998764321000000000         0        00001122232 23568999


Q ss_pred             EEEeCCCceeecceeecCCCceeEeEEEEEEeeccCccCCcccEEEEeecccCC-CCcccceeEEEEEEEEeecCCCCcc
Q psy92           235 SLFSPFSWEEIPQTNFPLHEWEHVLCLKNVSMEYEGTLSGLRGYIALGTNYNYS-EDVTCRGRILLFDIIEVVPEPGQPL  313 (638)
Q Consensus       235 ~lid~~t~~~i~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~~ivVGT~~~~~-ed~~~~GrI~vf~i~~vvpe~g~~~  313 (638)
                      +++||.+|++++  .++|+++|+++|++.|+|.++     +++||||||++..+ |+.+++|||++|+++          
T Consensus       810 ~lidp~t~~~i~--~~~l~~nE~~~sv~~v~~~~~-----~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~----------  872 (1158)
T 3ei3_A          810 LIIDQHTFEVLH--AHQFLQNEYALSLVSCKLGKD-----PNTYFIVGTAMVYPEEAEPKQGRIVVFQYS----------  872 (1158)
T ss_dssp             EEEETTTCCEEE--EEECCTTEEEEEEEEECCTTC-----CCCEEEEEEEECCTTCSSCCCEEEEEEEEE----------
T ss_pred             EEEeCCCCeEEE--EEeCCCCcceEEEEEEEEccC-----CCEEEEEEeeecCCCCCCCCceEEEEEEEE----------
Confidence            999999999998  899999999999999999642     47999999999985 678999999999997          


Q ss_pred             ccCceEEEEEEeeCCceEEEccccCeeEEEecCEEEEEEeeCCceeeeEEeeccee----EEEEeeecCEEEEeeccCcE
Q psy92           314 TKNKIKMIYAKEQKGPVTAICHVAGFLVTAVGQKIYIWQLKDNDLTGIAFIDTEVY----IASMVSVKNLILVGDYARSI  389 (638)
Q Consensus       314 t~~kLkl~~~~~~~G~V~al~~~~g~Ll~avg~~l~v~~l~~~~L~~~a~~d~~~~----i~~i~~~~~~IlvgD~~~Sv  389 (638)
                       ++||+++|+++++|+|+|||+|+|+|++|+|++|++|+|+++++++   .++..|    ++++++.+|+|+|||+++||
T Consensus       873 -~~kL~lv~~~~v~g~v~al~~~~g~Lla~ig~~l~vy~l~~~~~L~---~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv  948 (1158)
T 3ei3_A          873 -DGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR---TECNHYNNIMALYLKTKGDFILVGDLMRSV  948 (1158)
T ss_dssp             -TTEEEEEEEEEESSCEEEEEEETTEEEEEETTEEEEEEECTTSCEE---EEEEECCCSCEEEEEEETTEEEEEESSBCE
T ss_pred             -CCEEEEEEEEEcCCcCEEEeeeCCEEEEEcCCEEEEEECCCCceEE---EEeeccccEEEEEEeccCCEEEEEEhhheE
Confidence             2599999999999999999999999999999999999999776544   233333    66888999999999999999


Q ss_pred             EEEEEeccCCeEEEEeccCCCcceeeeecccCCCCCcccccccceeeeeeccccccccccccCCcccccccCCCceeEEE
Q psy92           390 ALLRYQPEYRTLSLVARDYKPTQPNSKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEFSSMGFMI  469 (638)
Q Consensus       390 ~ll~~~~~~~~l~~~arD~~~~~v~~~~~l~~~~~~~~vd~~~~~~~~~~~~gd~~~~~~r~~~~~~~~~~~~~~l~~l~  469 (638)
                      +|++|++++++|+++|||+.++|+++++||         |                               ++   .+++
T Consensus       949 ~~~~y~~~~~~L~~~a~D~~~~~vta~~~l---------d-------------------------------~~---t~l~  985 (1158)
T 3ei3_A          949 LLLAYKPMEGNFEEIARDFNPNWMSAVEIL---------D-------------------------------DD---NFLG  985 (1158)
T ss_dssp             EEEEEETTTTEEEEEEECCSCBCEEEEEEE---------E-------------------------------TT---EEEE
T ss_pred             EEEEEEcCCCeEEEEEeecccccEEEEEEE---------c-------------------------------cC---cEEE
Confidence            999999999999999999999999999997         5                               15   5999


Q ss_pred             EeCCCcEEEEEeCCCCcCCCCCceEEEEeeeecCcceeeEEEEeccCCCCCCCCCCCCceEEEEEeCCCcEEEEEeCChh
Q psy92           470 SDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSSISDAPGARSRFLTWYASLDGALGFFLPLPEK  549 (638)
Q Consensus       470 aD~~~nl~v~~~~~~~~~s~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~il~~t~~GsIg~l~pl~~~  549 (638)
                      +|++|||++++++|+++++.+++||+.+++||+|+.||+|+++++.+....+. ....++.++|+|++|+||+++|++++
T Consensus       986 aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~-~~~~~~~il~~T~~GsIg~l~pl~~~ 1064 (1158)
T 3ei3_A          986 AENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET-STPTQGSVLFGTVNGMIGLVTSLSES 1064 (1158)
T ss_dssp             EETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC--------CEEEEEEEEETTSCEEEEEEECHH
T ss_pred             EcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccc-cccccceEEEEecCCEEEEEEEcCHH
Confidence            99999999999999988888899999999999999999999987654321111 12346789999999999999999999


Q ss_pred             hHHHHHHHHHHHHhccCCCCCCCccccccccCCCcccCCCCcceeehHHHHHHHcCCHHHHHHHHHHhC----------C
Q psy92           550 NYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIG----------S  619 (638)
Q Consensus       550 ~~~~L~~Lq~~l~~~~~~~~gl~p~~~R~~~~~~~~~~~p~~~~IDGdlle~fl~L~~~~q~~ia~~lg----------~  619 (638)
                      .|++|..||++|++.++++||+||++||+++++.+  ..|+++||||||||+|++|+.++|++||+++|          +
T Consensus      1065 ~~~~L~~Lq~~l~~~~~~~~gl~~~~~Rs~~~~~~--~~~~~~~iDGdLle~fl~L~~~~q~~ia~~l~~~~~~~~~~~~ 1142 (1158)
T 3ei3_A         1065 WYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERK--TEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREA 1142 (1158)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSCCHHHHHSEECSSC--EECCBSEEEHHHHHGGGGSCHHHHHHHCCCC------------
T ss_pred             HHHHHHHHHHHHHhhCCCCcCCCHHHhhCeecccc--cCCCCccCcHHHHHHHHcCCHHHHHHHHHhhCccccccccCCC
Confidence            99999999999999999999999999999988754  35789999999999999999999999999996          6


Q ss_pred             CHHHHHHHHHHhhhc
Q psy92           620 KHNDILDELYDIEAL  634 (638)
Q Consensus       620 ~~~~i~~~l~~l~~~  634 (638)
                      +++||.++||||+|+
T Consensus      1143 t~~ei~k~~e~l~r~ 1157 (1158)
T 3ei3_A         1143 TADDLIKVVEELTRI 1157 (1158)
T ss_dssp             CCHHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHHHhhc
Confidence            999999999999986
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query638
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 97.93
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 97.59
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 97.45
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 97.39
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 96.91
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 96.61
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 95.93
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 95.82
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 95.68
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 95.61
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 95.6
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 95.53
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 95.37
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 95.14
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 95.08
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 95.08
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 94.91
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 94.69
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 94.54
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 94.17
d1tbga_340 beta1-subunit of the signal-transducing G protein 92.38
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 92.11
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 91.7
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 90.96
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 90.43
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 89.73
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 89.47
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 84.83
d1tbga_340 beta1-subunit of the signal-transducing G protein 82.48
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.93  E-value=0.0088  Score=56.85  Aligned_cols=101  Identities=13%  Similarity=0.237  Sum_probs=65.0

Q ss_pred             ccEEEEeecccCCCCcccceeEEEEEEEEeecCCCCccccCceEEEEEEeeCCceEEEcc-ccC-eeEEEe-cCEEEEEE
Q psy92           276 RGYIALGTNYNYSEDVTCRGRILLFDIIEVVPEPGQPLTKNKIKMIYAKEQKGPVTAICH-VAG-FLVTAV-GQKIYIWQ  352 (638)
Q Consensus       276 ~~~ivVGT~~~~~ed~~~~GrI~vf~i~~vvpe~g~~~t~~kLkl~~~~~~~G~V~al~~-~~g-~Ll~av-g~~l~v~~  352 (638)
                      ..++++|+         ..|.|.+|++..           .++..+.....+++|++++- -.+ +|+++. ..+|++|+
T Consensus       148 ~~~l~~g~---------~dg~i~~~d~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~  207 (299)
T d1nr0a2         148 KQFVAVGG---------QDSKVHVYKLSG-----------ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYS  207 (299)
T ss_dssp             SCEEEEEE---------TTSEEEEEEEET-----------TEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccccc---------cccccccccccc-----------cccccccccccccccccccccccccccccccccccccccc
Confidence            47899998         679999999863           34444444556789999863 344 444443 35799999


Q ss_pred             eeCCc-eeeeEEeec-ceeEEEEee--ecCEEEEeeccCcEEEEEEec
Q psy92           353 LKDND-LTGIAFIDT-EVYIASMVS--VKNLILVGDYARSIALLRYQP  396 (638)
Q Consensus       353 l~~~~-L~~~a~~d~-~~~i~~i~~--~~~~IlvgD~~~Sv~ll~~~~  396 (638)
                      +.++. +.....+.. ...|+++..  .+++|+.|..-..|.++....
T Consensus       208 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         208 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             ccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCC
Confidence            98554 322222221 234566553  467899998878887765543
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure