Psyllid ID: psy9316
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 264 | 2.2.26 [Sep-21-2011] | |||||||
| Q29RH4 | 351 | THO complex subunit 3 OS= | yes | N/A | 0.742 | 0.558 | 0.392 | 1e-31 | |
| Q8VE80 | 351 | THO complex subunit 3 OS= | yes | N/A | 0.742 | 0.558 | 0.392 | 2e-31 | |
| Q96J01 | 351 | THO complex subunit 3 OS= | yes | N/A | 0.742 | 0.558 | 0.392 | 2e-31 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | N/A | 0.848 | 0.146 | 0.290 | 3e-15 | |
| Q4R8E7 | 415 | Outer row dynein assembly | N/A | N/A | 0.761 | 0.484 | 0.271 | 9e-13 | |
| Q91WQ5 | 589 | TAF5-like RNA polymerase | no | N/A | 0.708 | 0.317 | 0.297 | 3e-12 | |
| Q7PS24 | 341 | Probable cytosolic iron-s | no | N/A | 0.458 | 0.354 | 0.337 | 6e-12 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | N/A | 0.723 | 0.151 | 0.295 | 9e-12 | |
| Q7ZVF0 | 416 | POC1 centriolar protein h | no | N/A | 0.791 | 0.502 | 0.277 | 9e-12 | |
| O75529 | 589 | TAF5-like RNA polymerase | no | N/A | 0.734 | 0.329 | 0.261 | 9e-12 |
| >sp|Q29RH4|THOC3_BOVIN THO complex subunit 3 OS=Bos taurus GN=THOC3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 116/214 (54%), Gaps = 18/214 (8%)
Query: 38 FNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 97
F H+ +E+ AH +KVHSVAWSCDGRRLASGSFDK+ ++F L+K L KE YRGH
Sbjct: 42 FRGHSKTREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKD-RLVKENNYRGHGD 100
Query: 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVA------IFALDK 151
SVDQLCWH +NPDL TASGDKT+RIWD RT K + + + ++ A+
Sbjct: 101 SVDQLCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGN 160
Query: 152 KGDLNKEVVYRGHTG--------SVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--SQ 201
K D+ + + H V+++ W+ N ++ +G+ + I K
Sbjct: 161 KDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDN-NMFFLTNGNGCINILSYPELKPVQS 219
Query: 202 IIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
I A I I + P G A G+ + LV+ DV
Sbjct: 220 INAHPSNCICIKFDPMGKYFATGSADALVSLWDV 253
|
Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex. Bos taurus (taxid: 9913) |
| >sp|Q8VE80|THOC3_MOUSE THO complex subunit 3 OS=Mus musculus GN=Thoc3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 116/214 (54%), Gaps = 18/214 (8%)
Query: 38 FNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 97
F H+ +E+ AH +KVHSVAWSCDGRRLASGSFDK+ ++F L+K L KE YRGH
Sbjct: 42 FRGHSKTREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKD-RLVKENNYRGHGD 100
Query: 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVA------IFALDK 151
SVDQLCWH +NPDL TASGDKT+RIWD RT K + + + ++ A+
Sbjct: 101 SVDQLCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGN 160
Query: 152 KGDLNKEVVYRGHTG--------SVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--SQ 201
K D+ + + H V+++ W+ N ++ +G+ + I K
Sbjct: 161 KDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDN-NMFFLTNGNGCINILSYPELKPVQS 219
Query: 202 IIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
I A I I + P G A G+ + LV+ DV
Sbjct: 220 INAHPSNCICIKFDPMGKYFATGSADALVSLWDV 253
|
Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex. Mus musculus (taxid: 10090) |
| >sp|Q96J01|THOC3_HUMAN THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 116/214 (54%), Gaps = 18/214 (8%)
Query: 38 FNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 97
F H+ +E+ AH +KVHSVAWSCDGRRLASGSFDK+ ++F L+K L KE YRGH
Sbjct: 42 FRGHSKTREFLAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKD-RLVKENNYRGHGD 100
Query: 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVA------IFALDK 151
SVDQLCWH +NPDL TASGDKT+RIWD RT K + + + ++ A+
Sbjct: 101 SVDQLCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGN 160
Query: 152 KGDLNKEVVYRGHTG--------SVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--SQ 201
K D+ + + H V+++ W+ N ++ +G+ + I K
Sbjct: 161 KDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDN-NMFFLTNGNGCINILSYPELKPVQS 219
Query: 202 IIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
I A I I + P G A G+ + LV+ DV
Sbjct: 220 INAHPSNCICIKFDPMGKYFATGSADALVSLWDV 253
|
Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.The TREX complex is essential for the export of Kaposi's sarcoma-associated herpesvirus (KSHV) intronless mRNAs and infectious virus production. The recruitment of the TREX complex to the intronless viral mRNA occurs via an interaction between KSHV ORF57 protein and ALYREF/THOC4. Homo sapiens (taxid: 9606) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 133/272 (48%), Gaps = 48/272 (17%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
+P+ L SGS V + N+ + +Q H S V+SV ++ DG LASGS D
Sbjct: 1209 NPDGSTLASGSSDQTV-----RLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSD 1263
Query: 73 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 130
K+V ++ + L+ ++GHT V+ + A NPD +L++ SGD+TVR+W+ + K
Sbjct: 1264 KTVRLWDISSSKCLH---TFQGHTNWVNSV---AFNPDGSMLASGSGDQTVRLWEISSSK 1317
Query: 131 SQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 171
MLASGS D++V ++++ L + GHT V +
Sbjct: 1318 CLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECL---YTFLGHTNWVGSV 1374
Query: 172 CWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENI---NITWAPNGNTIAVGNK 226
+ +PD +L++ SGD+TVR+W + K + +G N +I ++P+G +A G+
Sbjct: 1375 IF---SPDGAILASGSGDQTVRLWSISSGKC-LYTLQGHNNWVGSIVFSPDGTLLASGSD 1430
Query: 227 EDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258
+ V ++ E T GH+ RS+
Sbjct: 1431 DQTVRLWNISSG----ECLYTLHGHINSVRSV 1458
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q4R8E7|WDR69_MACFA Outer row dynein assembly protein 16 homolog OS=Macaca fascicularis GN=WDR69 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 117/239 (48%), Gaps = 38/239 (15%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHN--DIKEYQAHGSKVHSVAWSCDGRRLASGS 70
+P+ L+ +GS +D K +N N ++ + H +++ S++++ G R+ +GS
Sbjct: 186 NPQSTLVATGS-------MDTTAKLWNIQNGEEVCTLRGHSAEIISLSFNTSGDRIITGS 238
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGH-----------------TGSVDQLC--WHATNPDL 111
FD +V ++ D G +N + GH TGS+D+ C W ATN
Sbjct: 239 FDHTVVVWDADTGGKVN---ILIGHCAEISSALFNWDCSLILTGSMDKTCMLWDATNGKC 295
Query: 112 LSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 171
++T +G I D+ + ++A+ S D + IF+ + + K GH G + ++
Sbjct: 296 VATLTGHDD-EILDSCFDYTGKLIATASADGTARIFSAATRKCIAK---LEGHEGEISKI 351
Query: 172 CWHATNPDLLSTASGDKTVRIWDART-QKSQIIATKGENI-NITWAPNGNTIAVGNKED 228
++ LL T S DKT RIWDA+T Q Q++ + I + T+ GN + G+K++
Sbjct: 352 SFNPQGNRLL-TGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCTFNYKGNIVITGSKDN 409
|
May play a role in axonemal outer row dynein assembly. Macaca fascicularis (taxid: 9541) |
| >sp|Q91WQ5|TAF5L_MOUSE TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 35/222 (15%)
Query: 27 LVCKIDDYVKHFN--THNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG 84
L C D +++++ + + YQ H V V S ASGS D++ +++ D+
Sbjct: 358 LSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRTY 417
Query: 85 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIM---------- 134
L +Y GH VD + +H N + L+T S DKTVR+W A+ S +
Sbjct: 418 PLR---IYAGHLADVDCVKFHP-NSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLS 473
Query: 135 ---------LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLST 183
LAS D+ + ++ L G L KE+ RGHT S+ L A +PD L+++
Sbjct: 474 LSFSPNGKYLASAGEDQRLKLWDL-ASGTLFKEL--RGHTDSITSL---AFSPDSGLIAS 527
Query: 184 ASGDKTVRIWDARTQKSQIIA--TKGENINITWAPNGNTIAV 223
AS D +VR+WD R+ A + GE + + N ++V
Sbjct: 528 ASMDNSVRVWDIRSTCCNTPADGSSGELVGVYTGQMSNVLSV 569
|
Functions as a component of the PCAF complex. The PCAF complex is capable of efficiently acetylating histones in a nucleosomal context. The PCAF complex could be considered as the human version of the yeast SAGA complex. Mus musculus (taxid: 10090) |
| >sp|Q7PS24|CIAO1_ANOGA Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Anopheles gambiae GN=Ciao1 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 24/145 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK-GDLNKEVVYRGHTGSVDQLCWHAT 107
H + +AWSC G LAS SFD +VA++ DKK G+ GH V + W +
Sbjct: 58 GHTRTIRELAWSCCGHYLASASFDTTVAVW--DKKSGEFECNATLEGHDNEVKSVTW-SR 114
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+ +LL+T S DK+V IW+ A D++ + V GHT
Sbjct: 115 SGNLLATCSRDKSVWIWEIH-------------------HAPDQEDEYECVAVLNGHTQD 155
Query: 168 VDQLCWHATNPDLLSTASGDKTVRI 192
V ++CWH DLL++AS D T+R+
Sbjct: 156 VKKVCWHP-QEDLLASASYDNTIRM 179
|
Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. Anopheles gambiae (taxid: 7165) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 115/237 (48%), Gaps = 46/237 (19%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHND--IKEYQAHGSKVHSVAWSCDGRRLASGS 70
SP+ ++L S C D+ VK ++ + IK H +V SVA+ DG LAS S
Sbjct: 693 SPDGEILAS-------CGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASAS 745
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDA-- 126
DK++ ++ D+ + TG D + A +PD L++++ D T+++WD
Sbjct: 746 GDKTIKLW------DIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQ 799
Query: 127 ----RTQKSQI-------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
RT KS LASGS D+++ I+ G+ K Y GHT SV
Sbjct: 800 GKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNY-HTGECLK--TYIGHTNSVY 856
Query: 170 QLCWHATNPD--LLSTASGDKTVRIWDARTQKS--QIIATKGENINITWAPNGNTIA 222
+ A +PD +L + SGD+T+++WD +T + E ++ ++P+G T+A
Sbjct: 857 SI---AYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLA 910
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q7ZVF0|POC1A_DANRE POC1 centriolar protein homolog A OS=Danio rerio GN=poc1a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 118/249 (47%), Gaps = 40/249 (16%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSK--VHSVAWSCDGRRLASGS 70
SP K + SGS +D V +N + Y+ G K V V +S LAS S
Sbjct: 27 SPSGKQIASGS-------VDASVMVWNMKPQSRAYRFTGHKDAVTCVQFSPSAHLLASSS 79
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130
DK+V ++ KG+ V++R HTGSV +C+ A LL TAS D+++++W QK
Sbjct: 80 RDKTVRLWVPSVKGE---SVLFRAHTGSVRSVCFSADGQSLL-TASDDQSIKLWSVHRQK 135
Query: 131 --------------------SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 170
Q+M+ S S D++V ++ + ++ G++ VD
Sbjct: 136 IICTLREHNNWVRCARFSPDGQLMV-SVSDDRTVKLWDASSRQLIHTFCEPGGYSSYVD- 193
Query: 171 LCWHATNPDLLSTASGDKTVRIWDARTQK-SQIIATKGENIN-ITWAPNGNTIAVGNKED 228
+H ++ ++TAS D TVR+WD RT Q +N +++ P+GN + + +
Sbjct: 194 --FHPSST-CIATASSDNTVRVWDIRTHTLLQHYQVHSAAVNALSFHPSGNHLLTASSDS 250
Query: 229 LVTFIDVVK 237
+ +D+++
Sbjct: 251 TLKILDLLE 259
|
Danio rerio (taxid: 7955) |
| >sp|O75529|TAF5L_HUMAN TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1 | Back alignment and function description |
|---|
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 101/233 (43%), Gaps = 39/233 (16%)
Query: 23 SQFHLVCKI--DDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFAL 80
S+ HL C I ++ + N ++K + H V+S + D L S S D S+ + L
Sbjct: 312 SRIHLACDILEEEDDEDDNAGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDL 371
Query: 81 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSF 140
G V+Y+GH V WD + ASGS
Sbjct: 372 ---GSFTNTVLYQGHAYPV------------------------WDLDISPYSLYFASGSH 404
Query: 141 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200
D++ +++ D+ L +Y GH VD + +H N + L+T S DKTVR+W A+ S
Sbjct: 405 DRTARLWSFDRTYPLR---IYAGHLADVDCVKFHP-NSNYLATGSTDKTVRLWSAQQGNS 460
Query: 201 QIIAT--KGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGH 251
+ T +G +++ ++PNG +A ++ + D+ +E RGH
Sbjct: 461 VRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKEL----RGH 509
|
Functions as a component of the PCAF complex. The PCAF complex is capable of efficiently acetylating histones in a nucleosomal context. The PCAF complex could be considered as the human version of the yeast SAGA complex. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 264 | ||||||
| 170035192 | 322 | THO complex subunit 3 [Culex quinquefasc | 0.375 | 0.307 | 0.821 | 4e-38 | |
| 157112152 | 322 | wd-repeat protein [Aedes aegypti] gi|108 | 0.375 | 0.307 | 0.821 | 6e-38 | |
| 357615306 | 326 | putative THO complex subunit 3 [Danaus p | 0.746 | 0.604 | 0.453 | 2e-37 | |
| 193657073 | 325 | PREDICTED: THO complex subunit 3-like is | 0.787 | 0.64 | 0.429 | 4e-37 | |
| 332374996 | 320 | unknown [Dendroctonus ponderosae] | 0.772 | 0.637 | 0.427 | 5e-37 | |
| 91092824 | 320 | PREDICTED: similar to THO complex subuni | 0.856 | 0.706 | 0.397 | 6e-37 | |
| 242008838 | 322 | THO complex subunit, putative [Pediculus | 0.772 | 0.633 | 0.427 | 9e-36 | |
| 312373786 | 322 | hypothetical protein AND_17011 [Anophele | 0.772 | 0.633 | 0.421 | 1e-34 | |
| 405978319 | 289 | THO complex subunit 3 [Crassostrea gigas | 0.761 | 0.695 | 0.415 | 4e-34 | |
| 239790036 | 139 | ACYPI008848 [Acyrthosiphon pisum] | 0.424 | 0.805 | 0.640 | 6e-34 |
| >gi|170035192|ref|XP_001845455.1| THO complex subunit 3 [Culex quinquefasciatus] gi|167877007|gb|EDS40390.1| THO complex subunit 3 [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/101 (82%), Positives = 89/101 (88%), Gaps = 2/101 (1%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
LASGSFDKSV IF LD++ LNKE YRGHTGSVDQLCWHA+ PDLLSTASGDKTVRIWD
Sbjct: 44 LASGSFDKSVVIFTLDRE-RLNKESTYRGHTGSVDQLCWHASMPDLLSTASGDKTVRIWD 102
Query: 195 ARTQK-SQIIATKGENINITWAPNGNTIAVGNKEDLVTFID 234
AR K + II TKGENINITW+P+GNTIAVGNKEDLVTFID
Sbjct: 103 ARVGKCATIINTKGENINITWSPDGNTIAVGNKEDLVTFID 143
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157112152|ref|XP_001657416.1| wd-repeat protein [Aedes aegypti] gi|108878163|gb|EAT42388.1| AAEL006075-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 83/101 (82%), Positives = 89/101 (88%), Gaps = 2/101 (1%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
LASGSFDKSV IF LD++ LNKE YRGHTGSVDQLCWHA+ PDLLSTASGDKTVRIWD
Sbjct: 44 LASGSFDKSVVIFTLDRE-RLNKESTYRGHTGSVDQLCWHASLPDLLSTASGDKTVRIWD 102
Query: 195 ARTQK-SQIIATKGENINITWAPNGNTIAVGNKEDLVTFID 234
AR K + II TKGENINITW+P+GNTIAVGNKEDLVTFID
Sbjct: 103 ARIGKCATIINTKGENINITWSPDGNTIAVGNKEDLVTFID 143
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357615306|gb|EHJ69588.1| putative THO complex subunit 3 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 128/214 (59%), Gaps = 17/214 (7%)
Query: 37 HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96
+F +HN ++EY AH SKVHSV WSCDGR+LASGSFDKSV IF L++ L ++ V+RGHT
Sbjct: 20 YFQSHNVVREYIAHSSKVHSVGWSCDGRKLASGSFDKSVVIFNLERN-RLAQDFVFRGHT 78
Query: 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASG------SFDKSVAIFALD 150
GSVDQLCWHA++PDLLSTASGDK+VRIWD RT K +++ ++ S A A+
Sbjct: 79 GSVDQLCWHASHPDLLSTASGDKSVRIWDTRTHKCAAAISTKGENINIAWSPSGATIAVG 138
Query: 151 KKGDL-------NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII 203
K DL N +VV V+++ W+ T+ DL +G V I + Q +
Sbjct: 139 NKEDLVSFIDTRNYKVVEEQFNFEVNEISWNNTS-DLFFLTNGLGCVHILTYPHLELQTV 197
Query: 204 --ATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
A G I I P G A G+ + LV+ DV
Sbjct: 198 LKAHPGTCICIEHDPTGRYFATGSADALVSLWDV 231
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193657073|ref|XP_001949981.1| PREDICTED: THO complex subunit 3-like isoform 1 [Acyrthosiphon pisum] gi|328710962|ref|XP_003244414.1| PREDICTED: THO complex subunit 3-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/226 (42%), Positives = 131/226 (57%), Gaps = 18/226 (7%)
Query: 26 HLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD 85
H +++ +F TH +KE+QAH SKVHSV WSCDG+RLAS SFDKSVA F LDK
Sbjct: 6 HFDVNVNELKDYFKTHKSVKEFQAHSSKVHSVGWSCDGKRLASCSFDKSVATFTLDKDR- 64
Query: 86 LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-SQIMLASG-----S 139
LNKE Y+GH+GSVDQLCWH +NPDLLSTASGDKTV++WD R QK S +L G +
Sbjct: 65 LNKEYTYKGHSGSVDQLCWHKSNPDLLSTASGDKTVKVWDVRHQKCSNTILTKGENINIT 124
Query: 140 FDKSVAIFALDKKGDLN--------KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 191
+ A+ K DL K + + V+++ W+ DL +G V
Sbjct: 125 WSPDGHTIAVGNKEDLITFIDMRTLKPISEQQFNFEVNEMSWN-NESDLFFLTNGLGCVY 183
Query: 192 I--WDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
+ + Q+ + A G I I +AP+G+ AVG+ + V+ D+
Sbjct: 184 VLSFPDLVQRHVVKAHPGTCICIEFAPSGHYFAVGSADASVSLWDL 229
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332374996|gb|AEE62639.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
|---|
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 128/222 (57%), Gaps = 18/222 (8%)
Query: 30 KIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE 89
KI+++ ++F H+ KEY H SKVHSV WSCDG+RLASGSFDK V I+ LD+ L KE
Sbjct: 5 KIEEFQRYFKGHSKSKEYMGHSSKVHSVGWSCDGKRLASGSFDKCVCIYTLDRD-RLTKE 63
Query: 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVA---- 145
+ ++GH GSVDQLCWH TNPDLLSTASGDK+VRIWD R QKS + + + ++
Sbjct: 64 ITFKGHGGSVDQLCWHQTNPDLLSTASGDKSVRIWDTRVQKSVATINTKGENINITWSPN 123
Query: 146 --IFALDKKGDLNKEVVYRGHT--------GSVDQLCWHATNPDLLSTASGDKTVRIWDA 195
A+ K DL + R H V+++ W+ T+ DL +G + I
Sbjct: 124 GNAIAVGNKEDLVTFIDARTHKIEAEEQFHFEVNEISWNNTS-DLFFLTNGQGCIHILSY 182
Query: 196 RTQKSQII--ATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
K Q I A G I I + P+G A G+ + LV+ D+
Sbjct: 183 PDLKRQHILKAHPGTCICIEFDPSGKYFATGSADALVSLWDI 224
|
Source: Dendroctonus ponderosae Species: Dendroctonus ponderosae Genus: Dendroctonus Family: Curculionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91092824|ref|XP_967851.1| PREDICTED: similar to THO complex subunit 3 [Tribolium castaneum] gi|270003067|gb|EEZ99514.1| hypothetical protein TcasGA2_TC000095 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 137/254 (53%), Gaps = 28/254 (11%)
Query: 30 KIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE 89
KI++ +F +H IKEY H SKVHSV WSCDG+RLASGSFDKSV I+ LD+ LNKE
Sbjct: 5 KIEELQNYFKSHCKIKEYSGHSSKVHSVGWSCDGKRLASGSFDKSVCIYTLDRD-RLNKE 63
Query: 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVA---- 145
+ ++GH GSVDQLCWH ++PDLLSTASGDK+VRIWD R QK + + + ++
Sbjct: 64 ITFKGHGGSVDQLCWHQSHPDLLSTASGDKSVRIWDTRVQKCVATINTKGENINITWSPN 123
Query: 146 --IFALDKKGDLNKEVVYRGH--------TGSVDQLCWHATNPDLLSTASGDKTVRIWDA 195
A+ K DL + R H V+++ W+ T+ DL +G V I
Sbjct: 124 GNAIAVGNKEDLVTFIDARTHKIEAEEQFNFEVNEISWNNTS-DLFFLTNGQGCVHILSY 182
Query: 196 RTQKSQII--ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK----------SLPPRE 243
K Q I A G I I + P G A G+ + LV+ D+ + P R
Sbjct: 183 PELKRQHILKAHPGTCICIEFDPTGKYFATGSADALVSLWDINELACQRVFTRMDWPVRT 242
Query: 244 RTLTSRGHLMETRS 257
+ + G L+ + S
Sbjct: 243 ISFSYDGQLLASAS 256
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242008838|ref|XP_002425204.1| THO complex subunit, putative [Pediculus humanus corporis] gi|212508925|gb|EEB12466.1| THO complex subunit, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 127/222 (57%), Gaps = 18/222 (8%)
Query: 30 KIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE 89
K++ Y HF THN +E H SKVHSV WSCDG++LASGSFDK V++ LD++ LNK+
Sbjct: 7 KLEVYQNHFKTHNKSRELSVHTSKVHSVGWSCDGKKLASGSFDKCVSVCTLDRE-KLNKD 65
Query: 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSV----- 144
+RGH SVDQLCWHAT+PDLLSTASGDKTVRIWDAR+QK ++ + + ++
Sbjct: 66 FTFRGHGASVDQLCWHATHPDLLSTASGDKTVRIWDARSQKCVTIVETKGENINITWAPD 125
Query: 145 -AIFALDKKGDLNKEVVYRGHT--------GSVDQLCWHATNPDLLSTASGDKTVRIWDA 195
A+ K DL + R H V+++ W+ + DL +G V I
Sbjct: 126 GGTIAVGNKEDLVTFIDARTHKILAEEQFHFEVNEISWNK-DSDLFFLTNGQGCVHILSY 184
Query: 196 RTQKSQII--ATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
+ Q I A G I I + PN A G+ + LV+ DV
Sbjct: 185 PDLELQHILKAHPGTCICIEFDPNKKYFATGSADALVSLWDV 226
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312373786|gb|EFR21473.1| hypothetical protein AND_17011 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 128/223 (57%), Gaps = 19/223 (8%)
Query: 30 KIDDYVKHFNTHNDIKEY-QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK 88
++++ ++F THN+ +E +AH +KVHSV W+CDGRRLASGSFDK+VA+F LD+ LNK
Sbjct: 7 QLEELQEYFKTHNNKREASKAHTAKVHSVGWNCDGRRLASGSFDKTVAVFTLDRD-RLNK 65
Query: 89 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVA--- 145
E YRGHTGSVDQLCWHA+ PDLLSTASGDKTVRIWD R K + + + ++
Sbjct: 66 ENTYRGHTGSVDQLCWHASMPDLLSTASGDKTVRIWDVRVGKCATFINTKGENINITWSP 125
Query: 146 ---IFALDKKGDLNKEVVYRGH--------TGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
A+ K DL + R H + V+++ W + DL +G V I +
Sbjct: 126 DGHTIAVGNKEDLVTFIDTRTHKIRAEEQFSFEVNEIAW-SNGSDLFFLTNGQGCVHILN 184
Query: 195 ARTQKSQII--ATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
+ Q I A I I + P G A G+ + LV+ D
Sbjct: 185 YPNLELQQILKAHPSTCICIEFDPTGRYFATGSADALVSLWDA 227
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|405978319|gb|EKC42720.1| THO complex subunit 3 [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 124/219 (56%), Gaps = 18/219 (8%)
Query: 36 KHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD-LNKEVVYRG 94
KHF + I+E+ AH SKVHSVAWSCDGRRLASGSFDK+V++F LD D + K+ +RG
Sbjct: 3 KHFQQNKRIREHTAHDSKVHSVAWSCDGRRLASGSFDKTVSVFQLDNDRDRMVKDCTFRG 62
Query: 95 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSV------AIFA 148
H+ SVDQLCWH NPD L TASGDKT+RIWDART +S + + + ++ + A
Sbjct: 63 HSDSVDQLCWHPKNPDQLVTASGDKTIRIWDARTNRSVATVNTKGENINICWSPDGSTIA 122
Query: 149 LDKKGDLNKEVVYRGHTG--------SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200
+ K DL + R H V+++ W+ + DL SG ++ I K
Sbjct: 123 VGNKDDLITFIDVRSHRSKAEEQFKFEVNEISWN-NDGDLFFLTSGQGSINILSYPDLKL 181
Query: 201 Q--IIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237
Q + A I I + P G A G+ + LV+ DV +
Sbjct: 182 QHTLNAHPANCICIEFDPKGKYFATGSADALVSIWDVAE 220
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|239790036|dbj|BAH71604.1| ACYPI008848 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 73/114 (64%), Positives = 86/114 (75%), Gaps = 2/114 (1%)
Query: 26 HLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD 85
H +++ +F TH +KE+QAH SKVHSV WSCDG+RLAS SFDKSVA F LDK
Sbjct: 6 HFDVNVNELKDYFKTHKSVKEFQAHSSKVHSVGWSCDGKRLASCSFDKSVATFTLDK-DR 64
Query: 86 LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-SQIMLASG 138
LNKE Y+GH+GSVDQLCWH +NPDLLSTASGDKTV++WD R QK S +L G
Sbjct: 65 LNKEYTYKGHSGSVDQLCWHKSNPDLLSTASGDKTVKVWDVRHQKCSNTILTKG 118
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 264 | ||||||
| ZFIN|ZDB-GENE-040808-14 | 322 | thoc3 "THO complex 3" [Danio r | 0.401 | 0.329 | 0.660 | 3.2e-33 | |
| UNIPROTKB|E1BDF6 | 351 | E1BDF6 "Uncharacterized protei | 0.348 | 0.262 | 0.666 | 2.1e-32 | |
| FB|FBgn0037569 | 320 | tex "tex" [Drosophila melanoga | 0.375 | 0.309 | 0.673 | 2.3e-32 | |
| UNIPROTKB|F1NUQ0 | 381 | THOC3 "Uncharacterized protein | 0.375 | 0.259 | 0.673 | 7.7e-32 | |
| UNIPROTKB|Q29RH4 | 351 | THOC3 "THO complex subunit 3" | 0.375 | 0.282 | 0.673 | 7.7e-32 | |
| UNIPROTKB|E2RC43 | 351 | THOC3 "Uncharacterized protein | 0.375 | 0.282 | 0.673 | 7.7e-32 | |
| UNIPROTKB|Q96J01 | 351 | THOC3 "THO complex subunit 3" | 0.375 | 0.282 | 0.673 | 7.7e-32 | |
| UNIPROTKB|F1S386 | 351 | THOC3 "Uncharacterized protein | 0.375 | 0.282 | 0.673 | 7.7e-32 | |
| MGI|MGI:1920916 | 351 | Thoc3 "THO complex 3" [Mus mus | 0.375 | 0.282 | 0.673 | 7.7e-32 | |
| RGD|1311669 | 351 | Thoc3 "THO complex 3" [Rattus | 0.375 | 0.282 | 0.673 | 7.7e-32 |
| ZFIN|ZDB-GENE-040808-14 thoc3 "THO complex 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 72/109 (66%), Positives = 84/109 (77%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
LASGSFDK+ ++F L+K L KE YRGH SVDQLCWH TNPDL TASGDKT+RIWD
Sbjct: 41 LASGSFDKTASVFVLEKDR-LVKENNYRGHGDSVDQLCWHPTNPDLFVTASGDKTIRIWD 99
Query: 195 ARTQKSQI-IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242
RT K ++TKGENINI W+P+G TIAVGNK+D+VTFID K+ PR
Sbjct: 100 VRTTKCMATVSTKGENINICWSPDGQTIAVGNKDDVVTFIDA-KTHRPR 147
|
|
| UNIPROTKB|E1BDF6 E1BDF6 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 334 (122.6 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 62/93 (66%), Positives = 72/93 (77%)
Query: 38 FNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 97
F H+ +E+ AH +KVHSVAWSCDGRRLASGSFDK+ ++F L+K L KE YRGH
Sbjct: 42 FRGHSKTREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDR-LVKENNYRGHGD 100
Query: 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130
SVDQLCWH +NPDL TASGDKT+RIWD RT K
Sbjct: 101 SVDQLCWHPSNPDLFVTASGDKTIRIWDVRTTK 133
|
|
| FB|FBgn0037569 tex "tex" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 68/101 (67%), Positives = 79/101 (78%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
LASGSFDK+V +++L++ L K YRGHT SVDQLCWH TNPD +TASGDKTVRIWD
Sbjct: 43 LASGSFDKTVVVYSLERDRFL-KGNTYRGHTASVDQLCWHRTNPDQFATASGDKTVRIWD 101
Query: 195 ARTQKS-QIIATKGENINITWAPNGNTIAVGNKEDLVTFID 234
R K + TKGENINI W+P+G TIAVGNKEDL+TFID
Sbjct: 102 IRVGKCVSVTNTKGENINIAWSPDGKTIAVGNKEDLITFID 142
|
|
| UNIPROTKB|F1NUQ0 THOC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 68/101 (67%), Positives = 79/101 (78%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
LASGSFDK+ ++F L+K L KE YRGH SVDQLCWH +NPDL TASGDKT+RIWD
Sbjct: 42 LASGSFDKTASVFLLEKDR-LVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWD 100
Query: 195 ARTQKS-QIIATKGENINITWAPNGNTIAVGNKEDLVTFID 234
RT K + TKGENINI W+P+G TIAVGNK+D+VTFID
Sbjct: 101 VRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFID 141
|
|
| UNIPROTKB|Q29RH4 THOC3 "THO complex subunit 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 68/101 (67%), Positives = 79/101 (78%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
LASGSFDK+ ++F L+K L KE YRGH SVDQLCWH +NPDL TASGDKT+RIWD
Sbjct: 70 LASGSFDKTASVFLLEKDR-LVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWD 128
Query: 195 ARTQKS-QIIATKGENINITWAPNGNTIAVGNKEDLVTFID 234
RT K + TKGENINI W+P+G TIAVGNK+D+VTFID
Sbjct: 129 VRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFID 169
|
|
| UNIPROTKB|E2RC43 THOC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 68/101 (67%), Positives = 79/101 (78%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
LASGSFDK+ ++F L+K L KE YRGH SVDQLCWH +NPDL TASGDKT+RIWD
Sbjct: 70 LASGSFDKTASVFLLEKDR-LVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWD 128
Query: 195 ARTQKS-QIIATKGENINITWAPNGNTIAVGNKEDLVTFID 234
RT K + TKGENINI W+P+G TIAVGNK+D+VTFID
Sbjct: 129 VRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFID 169
|
|
| UNIPROTKB|Q96J01 THOC3 "THO complex subunit 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 68/101 (67%), Positives = 79/101 (78%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
LASGSFDK+ ++F L+K L KE YRGH SVDQLCWH +NPDL TASGDKT+RIWD
Sbjct: 70 LASGSFDKTASVFLLEKDR-LVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWD 128
Query: 195 ARTQKS-QIIATKGENINITWAPNGNTIAVGNKEDLVTFID 234
RT K + TKGENINI W+P+G TIAVGNK+D+VTFID
Sbjct: 129 VRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFID 169
|
|
| UNIPROTKB|F1S386 THOC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 68/101 (67%), Positives = 79/101 (78%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
LASGSFDK+ ++F L+K L KE YRGH SVDQLCWH +NPDL TASGDKT+RIWD
Sbjct: 70 LASGSFDKTASVFLLEKDR-LVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWD 128
Query: 195 ARTQKS-QIIATKGENINITWAPNGNTIAVGNKEDLVTFID 234
RT K + TKGENINI W+P+G TIAVGNK+D+VTFID
Sbjct: 129 VRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFID 169
|
|
| MGI|MGI:1920916 Thoc3 "THO complex 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 68/101 (67%), Positives = 79/101 (78%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
LASGSFDK+ ++F L+K L KE YRGH SVDQLCWH +NPDL TASGDKT+RIWD
Sbjct: 70 LASGSFDKTASVFLLEKDR-LVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWD 128
Query: 195 ARTQKS-QIIATKGENINITWAPNGNTIAVGNKEDLVTFID 234
RT K + TKGENINI W+P+G TIAVGNK+D+VTFID
Sbjct: 129 VRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFID 169
|
|
| RGD|1311669 Thoc3 "THO complex 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 68/101 (67%), Positives = 79/101 (78%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
LASGSFDK+ ++F L+K L KE YRGH SVDQLCWH +NPDL TASGDKT+RIWD
Sbjct: 70 LASGSFDKTASVFLLEKDR-LVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWD 128
Query: 195 ARTQKS-QIIATKGENINITWAPNGNTIAVGNKEDLVTFID 234
RT K + TKGENINI W+P+G TIAVGNK+D+VTFID
Sbjct: 129 VRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFID 169
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 264 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-25 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-11 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 3e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-05 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 9e-25
Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 33/204 (16%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ + H V VA+S DG+ LA+GS D ++ ++ L+ +GHTG V +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE---TGELLRTLKGHTGPVRDVA 58
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQI-------------------MLASGSFDKSV 144
A L S S DKT+R+WD T + +L+S S DK++
Sbjct: 59 ASADGTYLAS-GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTI 117
Query: 145 AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA 204
++ ++ RGHT V+ + + + ++++S D T+++WD RT K +A
Sbjct: 118 KVWDVETG---KCLTTLRGHTDWVNSVAFS-PDGTFVASSSQDGTIKLWDLRTGK--CVA 171
Query: 205 T-KG--ENIN-ITWAPNGNTIAVG 224
T G +N + ++P+G +
Sbjct: 172 TLTGHTGEVNSVAFSPDGEKLLSS 195
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 3e-18
Identities = 47/174 (27%), Positives = 69/174 (39%), Gaps = 33/174 (18%)
Query: 23 SQFHLVCKIDDYVKHFNTHND--IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFAL 80
F D +K ++ + H +V+SVA+S DG +L S S D ++ ++ L
Sbjct: 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206
Query: 81 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSF 140
RGH V+ + + + LL++ S D T+R+WD RT + L
Sbjct: 207 STG---KCLGTLRGHENGVNSVAFS-PDGYLLASGSEDGTIRVWDLRTGECVQTL----- 257
Query: 141 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
GHT SV L W L S S D T+RIWD
Sbjct: 258 ---------------------SGHTNSVTSLAWSPDGKRLAS-GSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.5 bits (197), Expect = 3e-17
Identities = 71/253 (28%), Positives = 110/253 (43%), Gaps = 31/253 (12%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRR-LASGSF 71
SP+ KLL SGS K+ D T + H V S+A+S DG +ASGS
Sbjct: 164 SPDGKLLASGSSLDGTIKLWD----LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219
Query: 72 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 131
D ++ ++ L GH+ SV + LL++ S D T+R+WD R+ S
Sbjct: 220 DGTIRLWDLSTG--KLLRSTLSGHSDSVVSSFSP--DGSLLASGSSDGTIRLWDLRSSSS 275
Query: 132 QIM--------------------LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 171
+ LASGS D +V ++ L+ G L + +GH G V L
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET-GKLLSSLTLKGHEGPVSSL 334
Query: 172 CWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN-ITWAPNGNTIAVGNKEDLV 230
+ L+S S D T+R+WD RT K N+ ++++P+G ++ G+ + V
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTV 394
Query: 231 TFIDVVKSLPPRE 243
D+ R
Sbjct: 395 RLWDLSTGSLLRN 407
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.3 bits (186), Expect = 7e-16
Identities = 61/268 (22%), Positives = 102/268 (38%), Gaps = 33/268 (12%)
Query: 9 HTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQA----HGSKVHSVAW-SCDG 63
H P G + L D +K ++ N K ++ H S V +A S DG
Sbjct: 64 HEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDG 122
Query: 64 RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123
+ S + D GH+ SV L + L S +S D T+++
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182
Query: 124 WDARTQK--------------------SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
WD RT K +++ASGS D ++ ++ L G
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG--KLLRSTLSG 240
Query: 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGEN---INITWAPNGNT 220
H+ SV + LL++ S D T+R+WD R+ S + G + +++ ++P+G
Sbjct: 241 HSDSVVSSFSP--DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL 298
Query: 221 IAVGNKEDLVTFIDVVKSLPPRERTLTS 248
+A G+ + V D+ TL
Sbjct: 299 LASGSSDGTVRLWDLETGKLLSSLTLKG 326
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.6 bits (179), Expect = 6e-15
Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 34/238 (14%)
Query: 8 FHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHND---IKEYQAHGSKVHSVAWSCDGR 64
D ++ ++ + ++ H S V SVA+S DG+
Sbjct: 238 LSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297
Query: 65 RLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124
LASGS D +V ++ L+ G L + +GH G V L + L+S S D T+R+W
Sbjct: 298 LLASGSSDGTVRLWDLET-GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356
Query: 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA 184
D RT K L S SV+ + ++S+
Sbjct: 357 DLRTGKPLKTLEGHSNVLSVSFSP----------------------------DGRVVSSG 388
Query: 185 SGDKTVRIWDARTQKS--QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240
S D TVR+WD T + ++ ++P+G ++A G+ ++ + D+ SL
Sbjct: 389 STDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-11
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 20 PSGSQFHLVCKIDDYVKHFNTHND--IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAI 77
P G + L D +K ++ + + H + V+SVA+S DG LASGS D ++ +
Sbjct: 187 PDGEKL-LSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245
Query: 78 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125
+ L + GHT SV L W L S S D T+RIWD
Sbjct: 246 WDLRTGECVQ---TLSGHTNSVTSLAWSPDGKRLAS-GSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 39/173 (22%), Positives = 77/173 (44%), Gaps = 31/173 (17%)
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKK 152
+GHT S+ L ++ ++L++ S D T+R+W+ D+SV K
Sbjct: 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHN-----------DESV-------K 112
Query: 153 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENI 210
+ + + +GH + + W+ N ++ ++ D V IWD +K QI K +
Sbjct: 113 EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLS- 171
Query: 211 NITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLME----TRSLW 259
++ W GN ++ + ID PR++ + S H+ + T+++W
Sbjct: 172 SLKWNIKGNLLSGTCVGKHMHIID------PRKQEIASSFHIHDGGKNTKNIW 218
|
Length = 568 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-06
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 40 THNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIF 78
+ +K + H V SVA+S DG+ LASGS D ++ ++
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 3e-05
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125
+GHTG V + + LL++ S D TVR+WD
Sbjct: 6 TLKGHTGPVTSVAFSPDGN-LLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 3e-05
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 160 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
+GHTG V + + LL++ S D TVR+WD
Sbjct: 6 TLKGHTGPVTSVAFSPDGN-LLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 3e-05
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIF 78
++ + H V SVA+S DG LASGS D +V ++
Sbjct: 4 LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 6e-05
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125
+GHTG V + + L++ S D T+++WD
Sbjct: 7 TLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 6e-05
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 160 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
+GHTG V + + L++ S D T+++WD
Sbjct: 7 TLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.002
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 61 CDGRRLASGSFDKSVAIFALDKKGDLNKEV-----VYRGHTGSVDQLCWHATNPDLLSTA 115
C LASGS D ++ ++ + + KE+ + +GH + + W+ N ++ ++
Sbjct: 85 CFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144
Query: 116 SGDKTVRIWDARTQK 130
D V IWD +K
Sbjct: 145 GFDSFVNIWDIENEK 159
|
Length = 568 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 264 | |||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0272|consensus | 459 | 99.97 | ||
| KOG0279|consensus | 315 | 99.97 | ||
| KOG0315|consensus | 311 | 99.97 | ||
| KOG0271|consensus | 480 | 99.97 | ||
| KOG0263|consensus | 707 | 99.96 | ||
| KOG0279|consensus | 315 | 99.96 | ||
| KOG0315|consensus | 311 | 99.96 | ||
| KOG0286|consensus | 343 | 99.96 | ||
| KOG0265|consensus | 338 | 99.96 | ||
| KOG0284|consensus | 464 | 99.95 | ||
| KOG0291|consensus | 893 | 99.95 | ||
| KOG0286|consensus | 343 | 99.95 | ||
| KOG0318|consensus | 603 | 99.95 | ||
| KOG0266|consensus | 456 | 99.95 | ||
| KOG0284|consensus | 464 | 99.95 | ||
| KOG0273|consensus | 524 | 99.94 | ||
| KOG0277|consensus | 311 | 99.94 | ||
| KOG0295|consensus | 406 | 99.94 | ||
| KOG0282|consensus | 503 | 99.94 | ||
| KOG0265|consensus | 338 | 99.94 | ||
| KOG0313|consensus | 423 | 99.94 | ||
| KOG0645|consensus | 312 | 99.93 | ||
| KOG0273|consensus | 524 | 99.93 | ||
| KOG0263|consensus | 707 | 99.93 | ||
| KOG0277|consensus | 311 | 99.93 | ||
| KOG0276|consensus | 794 | 99.92 | ||
| KOG0316|consensus | 307 | 99.92 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.92 | |
| KOG0285|consensus | 460 | 99.92 | ||
| KOG0645|consensus | 312 | 99.92 | ||
| KOG0281|consensus | 499 | 99.92 | ||
| KOG0296|consensus | 399 | 99.91 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.91 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.91 | |
| KOG0276|consensus | 794 | 99.91 | ||
| KOG0283|consensus | 712 | 99.91 | ||
| KOG0319|consensus | 775 | 99.91 | ||
| KOG0266|consensus | 456 | 99.91 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.91 | |
| KOG1332|consensus | 299 | 99.91 | ||
| KOG0295|consensus | 406 | 99.91 | ||
| KOG0310|consensus | 487 | 99.91 | ||
| KOG0647|consensus | 347 | 99.91 | ||
| KOG0281|consensus | 499 | 99.91 | ||
| KOG0285|consensus | 460 | 99.91 | ||
| KOG1407|consensus | 313 | 99.91 | ||
| KOG0283|consensus | 712 | 99.91 | ||
| KOG0292|consensus | 1202 | 99.9 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.9 | |
| KOG0264|consensus | 422 | 99.9 | ||
| KOG1332|consensus | 299 | 99.9 | ||
| KOG0264|consensus | 422 | 99.9 | ||
| KOG4283|consensus | 397 | 99.9 | ||
| KOG0316|consensus | 307 | 99.9 | ||
| KOG0278|consensus | 334 | 99.9 | ||
| KOG0319|consensus | 775 | 99.9 | ||
| KOG0293|consensus | 519 | 99.9 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.9 | |
| KOG0292|consensus | 1202 | 99.9 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.89 | |
| KOG1446|consensus | 311 | 99.89 | ||
| KOG0318|consensus | 603 | 99.89 | ||
| KOG0313|consensus | 423 | 99.89 | ||
| KOG0640|consensus | 430 | 99.89 | ||
| KOG0772|consensus | 641 | 99.89 | ||
| KOG0282|consensus | 503 | 99.88 | ||
| KOG0289|consensus | 506 | 99.88 | ||
| KOG0300|consensus | 481 | 99.87 | ||
| KOG0296|consensus | 399 | 99.87 | ||
| KOG0308|consensus | 735 | 99.87 | ||
| KOG0274|consensus | 537 | 99.87 | ||
| KOG0269|consensus | 839 | 99.87 | ||
| KOG0302|consensus | 440 | 99.86 | ||
| KOG0288|consensus | 459 | 99.86 | ||
| KOG0269|consensus | 839 | 99.86 | ||
| KOG1036|consensus | 323 | 99.86 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.85 | |
| KOG0310|consensus | 487 | 99.85 | ||
| KOG0643|consensus | 327 | 99.85 | ||
| KOG0973|consensus | 942 | 99.85 | ||
| KOG0268|consensus | 433 | 99.85 | ||
| KOG0291|consensus | 893 | 99.85 | ||
| KOG0301|consensus | 745 | 99.85 | ||
| KOG0321|consensus | 720 | 99.85 | ||
| KOG0306|consensus | 888 | 99.85 | ||
| KOG0647|consensus | 347 | 99.84 | ||
| KOG0293|consensus | 519 | 99.84 | ||
| KOG0305|consensus | 484 | 99.84 | ||
| KOG0641|consensus | 350 | 99.84 | ||
| KOG0973|consensus | 942 | 99.83 | ||
| KOG0305|consensus | 484 | 99.83 | ||
| KOG0270|consensus | 463 | 99.83 | ||
| KOG0294|consensus | 362 | 99.83 | ||
| KOG0268|consensus | 433 | 99.83 | ||
| KOG0274|consensus | 537 | 99.82 | ||
| KOG4328|consensus | 498 | 99.82 | ||
| KOG0640|consensus | 430 | 99.82 | ||
| KOG0306|consensus | 888 | 99.82 | ||
| KOG0275|consensus | 508 | 99.82 | ||
| KOG0299|consensus | 479 | 99.82 | ||
| KOG0643|consensus | 327 | 99.81 | ||
| KOG0270|consensus | 463 | 99.81 | ||
| KOG0290|consensus | 364 | 99.81 | ||
| KOG0308|consensus | 735 | 99.8 | ||
| KOG1036|consensus | 323 | 99.8 | ||
| KOG0275|consensus | 508 | 99.79 | ||
| KOG0646|consensus | 476 | 99.79 | ||
| KOG0299|consensus | 479 | 99.79 | ||
| KOG4378|consensus | 673 | 99.79 | ||
| KOG0641|consensus | 350 | 99.78 | ||
| KOG1445|consensus | 1012 | 99.78 | ||
| KOG0301|consensus | 745 | 99.78 | ||
| KOG2445|consensus | 361 | 99.77 | ||
| KOG0302|consensus | 440 | 99.77 | ||
| KOG1539|consensus | 910 | 99.77 | ||
| KOG0772|consensus | 641 | 99.77 | ||
| KOG0307|consensus | 1049 | 99.76 | ||
| KOG0288|consensus | 459 | 99.76 | ||
| KOG2096|consensus | 420 | 99.76 | ||
| KOG1446|consensus | 311 | 99.76 | ||
| KOG0294|consensus | 362 | 99.75 | ||
| KOG0303|consensus | 472 | 99.75 | ||
| KOG0267|consensus | 825 | 99.75 | ||
| KOG1408|consensus | 1080 | 99.75 | ||
| KOG1274|consensus | 933 | 99.75 | ||
| KOG0278|consensus | 334 | 99.74 | ||
| KOG1034|consensus | 385 | 99.74 | ||
| KOG1407|consensus | 313 | 99.74 | ||
| KOG0307|consensus | 1049 | 99.73 | ||
| KOG1408|consensus | 1080 | 99.73 | ||
| KOG0321|consensus | 720 | 99.73 | ||
| KOG0300|consensus | 481 | 99.73 | ||
| KOG0289|consensus | 506 | 99.72 | ||
| KOG0267|consensus | 825 | 99.71 | ||
| KOG2106|consensus | 626 | 99.71 | ||
| KOG2048|consensus | 691 | 99.71 | ||
| KOG0642|consensus | 577 | 99.71 | ||
| KOG1310|consensus | 758 | 99.7 | ||
| KOG0646|consensus | 476 | 99.7 | ||
| KOG2055|consensus | 514 | 99.69 | ||
| KOG0303|consensus | 472 | 99.69 | ||
| KOG4328|consensus | 498 | 99.68 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.67 | |
| KOG0639|consensus | 705 | 99.67 | ||
| KOG2096|consensus | 420 | 99.67 | ||
| KOG1273|consensus | 405 | 99.66 | ||
| KOG1274|consensus | 933 | 99.66 | ||
| KOG2055|consensus | 514 | 99.66 | ||
| KOG0639|consensus | 705 | 99.62 | ||
| KOG1445|consensus | 1012 | 99.61 | ||
| KOG1188|consensus | 376 | 99.61 | ||
| KOG1009|consensus | 434 | 99.6 | ||
| KOG1538|consensus | 1081 | 99.59 | ||
| KOG2919|consensus | 406 | 99.59 | ||
| KOG2048|consensus | 691 | 99.59 | ||
| KOG1587|consensus | 555 | 99.58 | ||
| KOG1063|consensus | 764 | 99.57 | ||
| KOG1539|consensus | 910 | 99.57 | ||
| KOG1587|consensus | 555 | 99.56 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.56 | |
| KOG4283|consensus | 397 | 99.55 | ||
| KOG1273|consensus | 405 | 99.55 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.55 | |
| KOG1063|consensus | 764 | 99.54 | ||
| KOG0650|consensus | 733 | 99.54 | ||
| KOG1007|consensus | 370 | 99.54 | ||
| KOG1517|consensus | 1387 | 99.53 | ||
| KOG1034|consensus | 385 | 99.53 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG0649|consensus | 325 | 99.48 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.48 | |
| KOG1523|consensus | 361 | 99.48 | ||
| KOG1517|consensus | 1387 | 99.47 | ||
| KOG0290|consensus | 364 | 99.47 | ||
| KOG0322|consensus | 323 | 99.47 | ||
| KOG1523|consensus | 361 | 99.47 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.47 | |
| KOG1524|consensus | 737 | 99.47 | ||
| KOG0771|consensus | 398 | 99.46 | ||
| KOG1188|consensus | 376 | 99.46 | ||
| KOG1009|consensus | 434 | 99.43 | ||
| KOG4227|consensus | 609 | 99.42 | ||
| KOG1524|consensus | 737 | 99.42 | ||
| KOG1310|consensus | 758 | 99.41 | ||
| KOG2394|consensus | 636 | 99.4 | ||
| KOG0642|consensus | 577 | 99.4 | ||
| KOG2106|consensus | 626 | 99.37 | ||
| KOG1007|consensus | 370 | 99.37 | ||
| KOG2445|consensus | 361 | 99.37 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.36 | |
| KOG4227|consensus | 609 | 99.35 | ||
| KOG1538|consensus | 1081 | 99.34 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.34 | |
| KOG4378|consensus | 673 | 99.33 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.32 | |
| KOG0644|consensus | 1113 | 99.32 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.31 | |
| KOG1963|consensus | 792 | 99.31 | ||
| KOG2919|consensus | 406 | 99.3 | ||
| KOG2110|consensus | 391 | 99.29 | ||
| KOG2394|consensus | 636 | 99.27 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.27 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.23 | |
| KOG0644|consensus | 1113 | 99.23 | ||
| KOG2111|consensus | 346 | 99.22 | ||
| KOG2139|consensus | 445 | 99.22 | ||
| KOG1240|consensus | 1431 | 99.21 | ||
| KOG1240|consensus | 1431 | 99.19 | ||
| KOG1334|consensus | 559 | 99.18 | ||
| KOG2139|consensus | 445 | 99.18 | ||
| KOG0649|consensus | 325 | 99.14 | ||
| KOG0650|consensus | 733 | 99.11 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.1 | |
| KOG1272|consensus | 545 | 99.1 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.09 | |
| KOG0322|consensus | 323 | 99.08 | ||
| KOG0280|consensus | 339 | 99.08 | ||
| KOG3881|consensus | 412 | 99.07 | ||
| KOG4547|consensus | 541 | 99.07 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.07 | |
| KOG1334|consensus | 559 | 99.05 | ||
| KOG2321|consensus | 703 | 99.04 | ||
| KOG1963|consensus | 792 | 99.02 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.0 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.0 | |
| KOG4497|consensus | 447 | 99.0 | ||
| KOG0974|consensus | 967 | 98.99 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.97 | |
| KOG2110|consensus | 391 | 98.97 | ||
| KOG0771|consensus | 398 | 98.97 | ||
| KOG1354|consensus | 433 | 98.94 | ||
| KOG1409|consensus | 404 | 98.93 | ||
| KOG0309|consensus | 1081 | 98.92 | ||
| KOG1064|consensus | 2439 | 98.81 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.81 | |
| KOG0974|consensus | 967 | 98.8 | ||
| KOG1409|consensus | 404 | 98.79 | ||
| KOG1354|consensus | 433 | 98.79 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.78 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.78 | |
| KOG4190|consensus | 1034 | 98.77 | ||
| KOG3881|consensus | 412 | 98.77 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.76 | |
| KOG2111|consensus | 346 | 98.74 | ||
| KOG2321|consensus | 703 | 98.74 | ||
| KOG0280|consensus | 339 | 98.72 | ||
| KOG4532|consensus | 344 | 98.7 | ||
| KOG4714|consensus | 319 | 98.69 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.68 | |
| KOG4532|consensus | 344 | 98.62 | ||
| KOG4497|consensus | 447 | 98.61 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.61 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.61 | |
| KOG1272|consensus | 545 | 98.58 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.55 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.54 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.48 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.47 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.45 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.45 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.43 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.43 | |
| KOG2041|consensus | 1189 | 98.42 | ||
| KOG0882|consensus | 558 | 98.42 | ||
| KOG2695|consensus | 425 | 98.41 | ||
| KOG4714|consensus | 319 | 98.37 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.31 | |
| KOG3914|consensus | 390 | 98.29 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.29 | |
| KOG2315|consensus | 566 | 98.28 | ||
| KOG3914|consensus | 390 | 98.27 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.27 | |
| KOG4547|consensus | 541 | 98.27 | ||
| KOG1064|consensus | 2439 | 98.26 | ||
| KOG0309|consensus | 1081 | 98.22 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.21 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.21 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.17 | |
| KOG1645|consensus | 463 | 98.13 | ||
| KOG1275|consensus | 1118 | 98.13 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.13 | |
| KOG1832|consensus | 1516 | 98.07 | ||
| KOG2041|consensus | 1189 | 98.05 | ||
| KOG2695|consensus | 425 | 98.0 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.89 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.88 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.88 | |
| KOG1912|consensus | 1062 | 97.79 | ||
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.71 | |
| KOG1008|consensus | 783 | 97.71 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.71 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.7 | |
| KOG4190|consensus | 1034 | 97.67 | ||
| KOG2066|consensus | 846 | 97.67 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.63 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.63 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.53 | |
| KOG2315|consensus | 566 | 97.49 | ||
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.38 | |
| KOG2114|consensus | 933 | 97.36 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.32 | |
| KOG1912|consensus | 1062 | 97.32 | ||
| KOG3621|consensus | 726 | 97.17 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.15 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.1 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.08 | |
| KOG2066|consensus | 846 | 97.06 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.06 | |
| KOG1645|consensus | 463 | 97.02 | ||
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.01 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.01 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.0 | |
| KOG4640|consensus | 665 | 97.0 | ||
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.0 | |
| KOG0882|consensus | 558 | 96.98 | ||
| KOG1008|consensus | 783 | 96.95 | ||
| KOG2114|consensus | 933 | 96.94 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.92 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.88 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.77 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.69 | |
| KOG2314|consensus | 698 | 96.51 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.47 | |
| KOG3621|consensus | 726 | 96.42 | ||
| KOG1275|consensus | 1118 | 96.17 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.14 | |
| KOG1920|consensus | 1265 | 96.08 | ||
| KOG1832|consensus | 1516 | 96.04 | ||
| KOG4640|consensus | 665 | 96.01 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.88 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 95.86 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.86 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.82 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 95.71 | |
| KOG2314|consensus | 698 | 95.6 | ||
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.53 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.49 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 95.45 | |
| KOG3617|consensus | 1416 | 95.34 | ||
| KOG2395|consensus | 644 | 95.22 | ||
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.21 | |
| KOG1920|consensus | 1265 | 95.11 | ||
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 95.01 | |
| KOG2444|consensus | 238 | 94.68 | ||
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.54 | |
| KOG3617|consensus | 1416 | 94.53 | ||
| KOG4649|consensus | 354 | 94.43 | ||
| KOG2444|consensus | 238 | 94.3 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 94.21 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 94.16 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 93.89 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.88 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 93.76 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 93.02 | |
| KOG2079|consensus | 1206 | 92.85 | ||
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.7 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 92.6 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.57 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 92.44 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 92.19 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 91.75 | |
| KOG2247|consensus | 615 | 91.56 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 90.98 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 90.86 | |
| KOG3630|consensus | 1405 | 90.61 | ||
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 90.12 | |
| KOG2079|consensus | 1206 | 90.07 | ||
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 90.01 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.54 | |
| KOG1916|consensus | 1283 | 89.17 | ||
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 89.02 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 87.76 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 86.68 | |
| KOG2395|consensus | 644 | 86.44 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 86.1 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 85.95 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 85.7 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 85.53 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 85.39 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 85.3 | |
| KOG3630|consensus | 1405 | 85.29 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 85.22 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 85.09 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 84.88 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 84.52 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 84.17 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 83.65 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 83.23 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 83.22 | |
| KOG4649|consensus | 354 | 82.84 | ||
| KOG4441|consensus | 571 | 82.23 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 80.14 |
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=229.70 Aligned_cols=227 Identities=22% Similarity=0.320 Sum_probs=189.4
Q ss_pred cCCCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCC--CCeEEEEECCCcEEEEEeccCCCCcccEEEecc
Q psy9316 20 PSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCD--GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH 95 (264)
Q Consensus 20 ~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~--g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h 95 (264)
..++..+.+|+|+|.+|.|+.. ..+.+|.+|.+.|.++.|+|. +..+++++.||++++|+++.... ...+.+|
T Consensus 184 S~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~---l~~l~gH 260 (459)
T KOG0272|consen 184 SRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP---LQDLEGH 260 (459)
T ss_pred ecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc---hhhhhcc
Confidence 3344456789999999999764 567889999999999999996 67999999999999999875322 2347799
Q ss_pred cccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCCcc
Q psy9316 96 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGDLN 156 (264)
Q Consensus 96 ~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~ 156 (264)
...|..++|+|.+ ++|.++|.|.+.++||++++... .++++|+.|..-++||+++...
T Consensus 261 ~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~-- 337 (459)
T KOG0272|consen 261 LARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC-- 337 (459)
T ss_pred hhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE--
Confidence 9999999999965 78999999999999999986532 2578899999999999987654
Q ss_pred ceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEEEEcC-CCCEEEEeeCCCeEEEE
Q psy9316 157 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENINITWAP-NGNTIAVGNKEDLVTFI 233 (264)
Q Consensus 157 ~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~~sp-~g~~la~gs~d~~i~~~ 233 (264)
+..+.+|...|..+.|+|+ +..+|||+.|++++|||++.... ....+...+..|.|+| .|.+|++++.|+++++|
T Consensus 338 -im~L~gH~k~I~~V~fsPN-Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 338 -IMFLAGHIKEILSVAFSPN-GYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIW 415 (459)
T ss_pred -EEEecccccceeeEeECCC-ceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeee
Confidence 3467889999999999995 68899999999999999998764 3334566678899998 88999999999999999
Q ss_pred EcccCCCCCCCcccCcccceeeeee
Q psy9316 234 DVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 234 d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
..++ .+...++.||...|=||
T Consensus 416 s~~~----~~~~ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 416 STRT----WSPLKSLAGHEGKVISL 436 (459)
T ss_pred cCCC----cccchhhcCCccceEEE
Confidence 8664 34456788999988776
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=222.84 Aligned_cols=231 Identities=25% Similarity=0.399 Sum_probs=182.8
Q ss_pred EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG 94 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~ 94 (264)
+|.|.++. +.+++.|.++++|+. .+...+..+|...|.|++|+|||+.|++|+.||+|++||-.+.+... ..+.+
T Consensus 122 ~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g--~~l~g 198 (480)
T KOG0271|consen 122 QFSPTGSR-LVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG--RALRG 198 (480)
T ss_pred EecCCCce-EEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc--ccccC
Confidence 67776665 467888999999975 45667889999999999999999999999999999999876544332 34789
Q ss_pred ccccEEeEEEecC----CCCeEEEEeCCCcEEEEECCCCCcc------------------eEEEeecCCCcEEEEEeccC
Q psy9316 95 HTGSVDQLCWHAT----NPDLLSTASGDKTVRIWDARTQKSQ------------------IMLASGSFDKSVAIFALDKK 152 (264)
Q Consensus 95 h~~~v~~i~~~~~----~~~~l~s~s~dg~i~vwd~~~~~~~------------------~~~~~~~~d~~i~i~~~~~~ 152 (264)
|...|++++|.|- ..++++++|.||.+++||+..+... -++.+|+.|++|++|+...
T Consensus 199 H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~d- 277 (480)
T KOG0271|consen 199 HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALD- 277 (480)
T ss_pred cccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccc-
Confidence 9999999999874 2368999999999999999875432 2578999999999998643
Q ss_pred CCccceEEEeccccceeeEEEc-----------C------------------------CCCCEEEEEeCCCcEEEEeCCC
Q psy9316 153 GDLNKEVVYRGHTGSVDQLCWH-----------A------------------------TNPDLLSTASGDKTVRIWDART 197 (264)
Q Consensus 153 ~~~~~~~~~~~h~~~i~~i~~~-----------~------------------------~~~~~i~s~~~dg~i~iwD~~t 197 (264)
+.+- ..+++|...|+.++.+ | +.++.++||+.|+++.+|+...
T Consensus 278 G~~~--r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~ 355 (480)
T KOG0271|consen 278 GKLC--RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK 355 (480)
T ss_pred hhHH--HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc
Confidence 2221 2467888888888776 1 1234699999999999998865
Q ss_pred Cc-ce--eEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeee
Q psy9316 198 QK-SQ--IIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRS 257 (264)
Q Consensus 198 ~~-~~--~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~ 257 (264)
.. .. ...+...++.+.||||++|+|++|=|..|++||-+++.. ..+++||.+.|--
T Consensus 356 ~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~----lasfRGHv~~VYq 414 (480)
T KOG0271|consen 356 SKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF----LASFRGHVAAVYQ 414 (480)
T ss_pred cccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch----hhhhhhccceeEE
Confidence 44 22 223456688999999999999999999999999776544 4689999987643
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=222.24 Aligned_cols=221 Identities=24% Similarity=0.406 Sum_probs=189.5
Q ss_pred eecCCCC--CceEeecCC-CeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEec
Q psy9316 7 QFHTPKS--PEYKLLPSG-SQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALD 81 (264)
Q Consensus 7 ~~~~~~~--~~~~~~~~~-~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~ 81 (264)
.|+++.+ -...|.|.. +...++|+.||.+++|... +.+..+.+|...|..++|+|+|++|++++.|.+-++||+.
T Consensus 212 ~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~ 291 (459)
T KOG0272|consen 212 TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE 291 (459)
T ss_pred EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccc
Confidence 4444444 445888984 4456789999999999753 5788899999999999999999999999999999999998
Q ss_pred cCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-------------------eEEEeecCCC
Q psy9316 82 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-------------------IMLASGSFDK 142 (264)
Q Consensus 82 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------------~~~~~~~~d~ 142 (264)
+.... ...++|...|.+++|++++ .++++|+-|..-+|||++++... ..+++|+.|+
T Consensus 292 tk~El---L~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 292 TKSEL---LLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN 367 (459)
T ss_pred cchhh---HhhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC
Confidence 64332 3467999999999999955 79999999999999999997642 3689999999
Q ss_pred cEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEEEEcCCCCE
Q psy9316 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENINITWAPNGNT 220 (264)
Q Consensus 143 ~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~~sp~g~~ 220 (264)
+++|||++..... .+..+|..-|..++|.|..+.+|+|++.|+++++|..++.++ .+..+.+.+.+++++||+.+
T Consensus 368 t~kVWDLR~r~~l---y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 368 TCKVWDLRMRSEL---YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQA 444 (459)
T ss_pred cEEEeeecccccc---eecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCce
Confidence 9999999987653 356789999999999998889999999999999999998875 34567788999999999999
Q ss_pred EEEeeCCCeEEEEE
Q psy9316 221 IAVGNKEDLVTFID 234 (264)
Q Consensus 221 la~gs~d~~i~~~d 234 (264)
+++++-|+++++|.
T Consensus 445 i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 445 IATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCceeeecc
Confidence 99999999999995
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=205.27 Aligned_cols=225 Identities=21% Similarity=0.369 Sum_probs=173.5
Q ss_pred ceEeecC--CCCCceEeecCCCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEE
Q psy9316 4 PVIQFHT--PKSPEYKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFA 79 (264)
Q Consensus 4 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~ 79 (264)
|+-+|.+ ++..+..+. +++++.++++||+.++.|+.. +..+.|.+|...|.+++|++|.++|++|+.|.+|++|+
T Consensus 55 ~~r~~~GHsH~v~dv~~s-~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLS-SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred eeeeeeccceEecceEEc-cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence 3334444 333444444 455788999999999999764 57788999999999999999999999999999999998
Q ss_pred eccCCCCcccEEEecccccEEeEEEecCC-CCeEEEEeCCCcEEEEECCCCCcc-------------------eEEEeec
Q psy9316 80 LDKKGDLNKEVVYRGHTGSVDQLCWHATN-PDLLSTASGDKTVRIWDARTQKSQ-------------------IMLASGS 139 (264)
Q Consensus 80 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~-------------------~~~~~~~ 139 (264)
+.. .......-.++...|.|++|+|.. .-+++++|.|++||+||+++.+.. .+.++|+
T Consensus 134 t~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg 211 (315)
T KOG0279|consen 134 TLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG 211 (315)
T ss_pred ecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC
Confidence 753 333222222347889999999974 458899999999999999885421 2578899
Q ss_pred CCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe------e-----cCc
Q psy9316 140 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA------T-----KGE 208 (264)
Q Consensus 140 ~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~------~-----~~~ 208 (264)
.||.+.+||++.... .....|.+.|++++|+|+. +.+....+.+|+|||++++...... . ...
T Consensus 212 kdg~~~LwdL~~~k~----lysl~a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~ 285 (315)
T KOG0279|consen 212 KDGEAMLWDLNEGKN----LYSLEAFDIVNSLCFSPNR--YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPI 285 (315)
T ss_pred CCceEEEEEccCCce----eEeccCCCeEeeEEecCCc--eeEeeccCCceEEEeccchhhhhhccccccccccccCCcE
Confidence 999999999987554 2345788999999999954 4444566788999999988642211 1 113
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 209 NINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 209 ~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
..+++||++|..|..|-.|+.|++|.+.+
T Consensus 286 clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 286 CLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 46789999999999999999999999864
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=195.54 Aligned_cols=227 Identities=19% Similarity=0.305 Sum_probs=180.1
Q ss_pred CeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEE
Q psy9316 23 SQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 100 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~ 100 (264)
+.++.+++.|-+|+.|.. +.+.++++...+.|+.|...|+++.|++|+. ..|++||++.... .....+++|+..|+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-NPVATFEGHTKNVT 87 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-CceeEEeccCCceE
Confidence 345567889999999965 5677888888899999999999999999876 5799999986543 34567999999999
Q ss_pred eEEEecCCCCeEEEEeCCCcEEEEECCCCCc------------------ceEEEeecCCCcEEEEEeccCCCccceEEEe
Q psy9316 101 QLCWHATNPDLLSTASGDKTVRIWDARTQKS------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYR 162 (264)
Q Consensus 101 ~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~ 162 (264)
.+.|.. +++++.+||+||++|+||+++... +..+++|..+|.|++||+..+...... ..
T Consensus 88 aVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l--iP 164 (311)
T KOG0315|consen 88 AVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL--IP 164 (311)
T ss_pred EEEEee-cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc--CC
Confidence 999987 458999999999999999998532 335789999999999999765432211 11
Q ss_pred ccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--------eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEE
Q psy9316 163 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--------QIIATKGENINITWAPNGNTIAVGNKEDLVTFID 234 (264)
Q Consensus 163 ~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--------~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d 234 (264)
.-...|.++...|+ +.+++.+...|.+++|++-+.+. +.+.+.+++..+.+|||++|||++|+|.+++||.
T Consensus 165 e~~~~i~sl~v~~d-gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPD-GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred CCCcceeeEEEcCC-CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence 12246888888885 56888889999999999977542 3345667889999999999999999999999999
Q ss_pred cccCCCCCCCcccCcccceeeeeeccc
Q psy9316 235 VVKSLPPRERTLTSRGHLMETRSLWGT 261 (264)
Q Consensus 235 ~~~~~~~~~~~~~~~~h~~~~~~~~~~ 261 (264)
+.++ .+-|.. ..||. ||+|+-
T Consensus 244 ~~~~-~kle~~--l~gh~---rWvWdc 264 (311)
T KOG0315|consen 244 TDDF-FKLELV--LTGHQ---RWVWDC 264 (311)
T ss_pred cCCc-eeeEEE--eecCC---ceEEee
Confidence 8876 443333 56665 999973
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=207.48 Aligned_cols=228 Identities=25% Similarity=0.360 Sum_probs=178.2
Q ss_pred eecCCCeeEEEeecCceEEeccccc---cccccccCCCCEEEEEECC-----CCCeEEEEECCCcEEEEEeccCCCCccc
Q psy9316 18 LLPSGSQFHLVCKIDDYVKHFNTHN---DIKEYQAHGSKVHSVAWSC-----DGRRLASGSFDKSVAIFALDKKGDLNKE 89 (264)
Q Consensus 18 ~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~~h~~~V~~l~~s~-----~g~~l~s~s~dg~i~v~~~~~~~~~~~~ 89 (264)
+.|.|.. +.+++.||.|.+|+..+ ..+.+.+|+..|++|+|.| ..++|++++.||+++|||+... ...
T Consensus 165 wsPDgk~-iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~---~~~ 240 (480)
T KOG0271|consen 165 WSPDGKK-IASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG---TCV 240 (480)
T ss_pred ECCCcch-hhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc---eEE
Confidence 3344433 23456699999998532 3578999999999999974 5689999999999999998642 223
Q ss_pred EEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc--------------------------------------
Q psy9316 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------------------------- 131 (264)
Q Consensus 90 ~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------------------------- 131 (264)
..+.+|+.+|+|++|- +..++.+||.|++|++|+...+..
T Consensus 241 ~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~s 318 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFS 318 (480)
T ss_pred EEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChH
Confidence 5578999999999995 456999999999999999765321
Q ss_pred -----------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEe
Q psy9316 132 -----------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194 (264)
Q Consensus 132 -----------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD 194 (264)
...+++|+.|.++.+|....... ......+|++-|+.+.|+|+ ..+|||++=|.+|++||
T Consensus 319 e~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk--pi~rmtgHq~lVn~V~fSPd-~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 319 EEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK--PITRMTGHQALVNHVSFSPD-GRYIASASFDKSVKLWD 395 (480)
T ss_pred HHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc--chhhhhchhhheeeEEECCC-ccEEEEeecccceeeee
Confidence 01489999999999997643321 12235789999999999995 57999999999999999
Q ss_pred CCCCcce--eEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 195 ARTQKSQ--IIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 195 ~~t~~~~--~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
.++++.. +..+-+.+..++||.|.+.|++||+|.++++||+++. .-..-+-||.-||-+|
T Consensus 396 g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk----Kl~~DLpGh~DEVf~v 457 (480)
T KOG0271|consen 396 GRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK----KLKQDLPGHADEVFAV 457 (480)
T ss_pred CCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee----eecccCCCCCceEEEE
Confidence 9999852 2335567889999999999999999999999999851 1223466888888765
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=216.69 Aligned_cols=186 Identities=27% Similarity=0.459 Sum_probs=161.4
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEE
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~v 123 (264)
.+++.+|.++|....|+|+.++|+++|.|+++++|.+.+. .....+++|..+|.++.|.|. +.+++|+|.|++.++
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArL 519 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARL 519 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCC-ceEEEecCCCceeee
Confidence 3458899999999999999999999999999999998753 234568899999999999995 489999999999999
Q ss_pred EECCCCC-------------------cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEE
Q psy9316 124 WDARTQK-------------------SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA 184 (264)
Q Consensus 124 wd~~~~~-------------------~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~ 184 (264)
|...... +..++++|+.|.++++||...... ...|.+|.++|.+++|+| .+.+|+||
T Consensus 520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~---VRiF~GH~~~V~al~~Sp-~Gr~LaSg 595 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS---VRIFTGHKGPVTALAFSP-CGRYLASG 595 (707)
T ss_pred eecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE---EEEecCCCCceEEEEEcC-CCceEeec
Confidence 9876533 223689999999999999876544 346799999999999999 56899999
Q ss_pred eCCCcEEEEeCCCCcc--eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 185 SGDKTVRIWDARTQKS--QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 185 ~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
+.||.|.+||+.++.. +...+.+.+.++.||.+|..||+|+.|..|++||+.+
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999774 3445677889999999999999999999999999875
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=187.88 Aligned_cols=217 Identities=19% Similarity=0.307 Sum_probs=170.9
Q ss_pred EeecCCCeeEEEeecCceEEeccc-------cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCccc
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT-------HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE 89 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~ 89 (264)
+.-+.+.+....++-|..+-.|.. +...+.|.||...|..+..++||++.+++++|+++++||+... ...
T Consensus 22 a~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g---~~t 98 (315)
T KOG0279|consen 22 AIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG---EST 98 (315)
T ss_pred EeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC---cEE
Confidence 334444555555666666555533 4457889999999999999999999999999999999999753 334
Q ss_pred EEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC----------------------cceEEEeecCCCcEEEE
Q psy9316 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK----------------------SQIMLASGSFDKSVAIF 147 (264)
Q Consensus 90 ~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~----------------------~~~~~~~~~~d~~i~i~ 147 (264)
..|.+|...|.+++|++++ +.+++||+|.++++||+.... ....+++++.|+++++|
T Consensus 99 ~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvW 177 (315)
T KOG0279|consen 99 RRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVW 177 (315)
T ss_pred EEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEE
Confidence 5688999999999999855 678899999999999985421 13468899999999999
Q ss_pred EeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc-eeEeecCceEEEEEcCCCCEEEEeeC
Q psy9316 148 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIATKGENINITWAPNGNTIAVGNK 226 (264)
Q Consensus 148 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~-~~~~~~~~~~~v~~sp~g~~la~gs~ 226 (264)
+++... ....+.+|+..++.+.++|+ +.++++|+.||.+.+||++.++. ........+.+++|+|+.-+|+.+.
T Consensus 178 nl~~~~---l~~~~~gh~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at- 252 (315)
T KOG0279|consen 178 NLRNCQ---LRTTFIGHSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT- 252 (315)
T ss_pred ccCCcc---hhhccccccccEEEEEECCC-CCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-
Confidence 986432 22356789999999999985 57999999999999999998876 2333456788999999877777776
Q ss_pred CCeEEEEEcccCCCCC
Q psy9316 227 EDLVTFIDVVKSLPPR 242 (264)
Q Consensus 227 d~~i~~~d~~~~~~~~ 242 (264)
+.-|+|||+.......
T Consensus 253 ~~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 253 ATSIKIWDLESKAVVE 268 (315)
T ss_pred CCceEEEeccchhhhh
Confidence 5559999988654443
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=183.40 Aligned_cols=214 Identities=21% Similarity=0.372 Sum_probs=165.6
Q ss_pred eecCceEEeccc----cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEE
Q psy9316 29 CKIDDYVKHFNT----HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 104 (264)
Q Consensus 29 ~~~d~~~~~~~~----~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~ 104 (264)
+....-|++|+. +..+.+|.+|...|+++.|..+|+++++||.||+++|||+.... .. ..+ .|.++|.++..
T Consensus 57 aa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-~q--R~~-~~~spVn~vvl 132 (311)
T KOG0315|consen 57 AAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-CQ--RNY-QHNSPVNTVVL 132 (311)
T ss_pred hccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc-cc--hhc-cCCCCcceEEe
Confidence 344556777754 34678999999999999999999999999999999999987532 21 223 57799999999
Q ss_pred ecCCCCeEEEEeCCCcEEEEECCCCCc--------------------ceEEEeecCCCcEEEEEeccCCC---ccceEEE
Q psy9316 105 HATNPDLLSTASGDKTVRIWDARTQKS--------------------QIMLASGSFDKSVAIFALDKKGD---LNKEVVY 161 (264)
Q Consensus 105 ~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------------~~~~~~~~~d~~i~i~~~~~~~~---~~~~~~~ 161 (264)
+|.. ..|++|..+|.|++||+..... ..+++.+..-|+..+|++-.... +.+...+
T Consensus 133 hpnQ-teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 133 HPNQ-TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF 211 (311)
T ss_pred cCCc-ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence 9955 5677899999999999976421 12567777888999999754332 3333457
Q ss_pred eccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCC-cc--eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ-KS--QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 162 ~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~-~~--~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
..|...+..+.++|+ ..+|++++.|.+++||+.++. +. .+..+..-+..++||.||.||++|+.|+.+++||++.+
T Consensus 212 ~ah~~~il~C~lSPd-~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPD-VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred ecccceEEEEEECCC-CcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence 889999999999985 579999999999999999987 21 22223345889999999999999999999999998754
Q ss_pred CCCCCCcccCcccc
Q psy9316 239 LPPRERTLTSRGHL 252 (264)
Q Consensus 239 ~~~~~~~~~~~~h~ 252 (264)
. +...+.||.
T Consensus 291 k----~v~qy~gh~ 300 (311)
T KOG0315|consen 291 K----EVRQYQGHH 300 (311)
T ss_pred c----eeeecCCcc
Confidence 3 344455654
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-26 Score=185.57 Aligned_cols=242 Identities=21% Similarity=0.331 Sum_probs=192.6
Q ss_pred EeecCCCCCceEeecCCCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccC
Q psy9316 6 IQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83 (264)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~ 83 (264)
|..|.-+.+.+.+-+.. ..+++++.||.+-+|+.. ++.+.+......|+..+|+|.|++++.||.|....||++...
T Consensus 51 LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR 129 (343)
T ss_pred ecccccceeeeEecCCc-CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence 34455555555554444 345688999999889864 566677788889999999999999999999999999998754
Q ss_pred ---CCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc--------------------ceEEEeecC
Q psy9316 84 ---GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--------------------QIMLASGSF 140 (264)
Q Consensus 84 ---~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------------~~~~~~~~~ 140 (264)
+.......+.+|++.+.++.|.. + ..|+++|.|.+..+||+++++. ...+++|+-
T Consensus 130 d~~g~~~v~r~l~gHtgylScC~f~d-D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 130 DAEGNVRVSRELAGHTGYLSCCRFLD-D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred cccccceeeeeecCccceeEEEEEcC-C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc
Confidence 22233345789999999999975 3 5677999999999999998653 235889999
Q ss_pred CCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-Eeec---CceEEEEEcC
Q psy9316 141 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATK---GENINITWAP 216 (264)
Q Consensus 141 d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~---~~~~~v~~sp 216 (264)
|+..++||++.... ...|.+|.+.|++++|.|+ +.-|++|+.|++.++||+++.+... ..+. ..+++++||.
T Consensus 208 D~~aklWD~R~~~c---~qtF~ghesDINsv~ffP~-G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQC---VQTFEGHESDINSVRFFPS-GDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred ccceeeeeccCcce---eEeecccccccceEEEccC-CCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 99999999987543 3468999999999999995 5788999999999999999976433 2222 3478999999
Q ss_pred CCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 217 NGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 217 ~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
.|++|.+|..|..+.+||+-+ .++...+-||.--|.+|
T Consensus 284 SGRlLfagy~d~~c~vWDtlk----~e~vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLK----GERVGVLAGHENRVSCL 321 (343)
T ss_pred cccEEEeeecCCceeEeeccc----cceEEEeeccCCeeEEE
Confidence 999999999999999999764 45556778888777766
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-27 Score=189.99 Aligned_cols=242 Identities=24% Similarity=0.391 Sum_probs=184.3
Q ss_pred ceEeecCCCC--CceEeecCCCeeEEEeecCceEEecccc---ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEE
Q psy9316 4 PVIQFHTPKS--PEYKLLPSGSQFHLVCKIDDYVKHFNTH---NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIF 78 (264)
Q Consensus 4 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~ 78 (264)
|.|++-+++. .+.+|.|.|+ .+++++.|..|-+|+.. +..-.+.+|++.|+.+.|.+|+..|+++|.|++++.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 5555544444 5568888664 66788889998888753 4555678999999999999999999999999999999
Q ss_pred EeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc--------c----------eEEEeecC
Q psy9316 79 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--------Q----------IMLASGSF 140 (264)
Q Consensus 79 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------~----------~~~~~~~~ 140 (264)
|+.+.... ..++.|..-|..++-...+..++.|++.||++++||+++... + ..+.+|+.
T Consensus 118 D~~tG~~~---rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 118 DAETGKRI---RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred ecccceee---ehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccc
Confidence 99764332 347789999988886556677899999999999999995321 1 13578889
Q ss_pred CCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc---eeEeecC-------ceE
Q psy9316 141 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---QIIATKG-------ENI 210 (264)
Q Consensus 141 d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~---~~~~~~~-------~~~ 210 (264)
|+.|++||++.+... .+.++|.++|..+..+|.+ .++.+-+.|.++++||++-... .+....+ ...
T Consensus 195 dn~ikvWd~r~~d~~---~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGL---YTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred cCceeeeccccCcce---EEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 999999999754332 3678999999999999865 5777899999999999986432 1222222 135
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeee
Q psy9316 211 NITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRS 257 (264)
Q Consensus 211 ~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~ 257 (264)
.++|||+++++.+|+.|..+++||....+.. -.+-||..-|-+
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~r~~l----yklpGh~gsvn~ 313 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTSRRIL----YKLPGHYGSVNE 313 (338)
T ss_pred eeeccCCCCccccccccceEEEeecccccEE----EEcCCcceeEEE
Confidence 6899999999999999999999997652221 134577665543
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-28 Score=202.35 Aligned_cols=213 Identities=27% Similarity=0.465 Sum_probs=177.6
Q ss_pred eEeecCCCeeEEEeecCceEEecccc-ccccccccCC-CCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTH-NDIKEYQAHG-SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR 93 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~h~-~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~ 93 (264)
+++..++.+ .+++..+|.||+|... +.++.++.|+ ..|.+++|+|....++++|.||+|+|||.... ..+.++.
T Consensus 144 m~ws~~g~w-miSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~---kee~vL~ 219 (464)
T KOG0284|consen 144 MKWSHNGTW-MISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP---KEERVLR 219 (464)
T ss_pred EEEccCCCE-EEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC---chhheec
Confidence 355555654 5778889999999764 6677777776 89999999998899999999999999997642 3345678
Q ss_pred cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCC
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGD 154 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~ 154 (264)
+|.-.|.+++|+|.- .+++++|.|..|++||.+++.+. ..+++++.|.+++++|++.-.
T Consensus 220 GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk- 297 (464)
T KOG0284|consen 220 GHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK- 297 (464)
T ss_pred cCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH-
Confidence 999999999999954 68999999999999999987532 357899999999999998422
Q ss_pred ccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce---eEeecCceEEEEEcCCCCEEEEeeCCCeEE
Q psy9316 155 LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ---IIATKGENINITWAPNGNTIAVGNKEDLVT 231 (264)
Q Consensus 155 ~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~---~~~~~~~~~~v~~sp~g~~la~gs~d~~i~ 231 (264)
....+++|...+.++.|+|-...+|++|+.||.|..|.+...+.. ..++...+.+++|+|-|-.||+|+.|..++
T Consensus 298 --El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~r 375 (464)
T KOG0284|consen 298 --ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVR 375 (464)
T ss_pred --HHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCccee
Confidence 234578999999999999999999999999999999999854432 235667899999999999999999999999
Q ss_pred EEEcc
Q psy9316 232 FIDVV 236 (264)
Q Consensus 232 ~~d~~ 236 (264)
+|.-.
T Consensus 376 fw~r~ 380 (464)
T KOG0284|consen 376 FWTRN 380 (464)
T ss_pred eeccC
Confidence 99743
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=204.02 Aligned_cols=213 Identities=25% Similarity=0.461 Sum_probs=166.7
Q ss_pred EeecCCCeeEEEeecCce--EEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec
Q psy9316 17 KLLPSGSQFHLVCKIDDY--VKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG 94 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~ 94 (264)
.+..+|.++.+-|+.=|. ++.|-.-.-+...++|-..+.+++++|||++|++|+.||.|+|||... +- ...++..
T Consensus 314 ~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S-gf--C~vTFte 390 (893)
T KOG0291|consen 314 SFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS-GF--CFVTFTE 390 (893)
T ss_pred EecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC-ce--EEEEecc
Confidence 344457776666666444 455555555667789999999999999999999999999999999753 22 2356889
Q ss_pred ccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc--------------------eEEEeecCCC-cEEEEEeccCC
Q psy9316 95 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--------------------IMLASGSFDK-SVAIFALDKKG 153 (264)
Q Consensus 95 h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--------------------~~~~~~~~d~-~i~i~~~~~~~ 153 (264)
|++.|+.++|+. .++.+++.|-||+|+.||+....+- .++.+|+.|. .|.+|+...+.
T Consensus 391 Hts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq 469 (893)
T KOG0291|consen 391 HTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ 469 (893)
T ss_pred CCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe
Confidence 999999999997 4578889999999999999764321 1233444443 57889886543
Q ss_pred CccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc--ceeEeecCceEEEEEcCCCCEEEEeeCCCeEE
Q psy9316 154 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--SQIIATKGENINITWAPNGNTIAVGNKEDLVT 231 (264)
Q Consensus 154 ~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~--~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~ 231 (264)
.+ ..+.+|.++|..++|+|. +..|+|++.|.+|++||+-... .........+..++|.|+|+-||+++-||.|.
T Consensus 470 ll---DiLsGHEgPVs~l~f~~~-~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqIt 545 (893)
T KOG0291|consen 470 LL---DILSGHEGPVSGLSFSPD-GSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQIT 545 (893)
T ss_pred ee---ehhcCCCCcceeeEEccc-cCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEE
Confidence 22 246899999999999985 4699999999999999998764 33444566789999999999999999999999
Q ss_pred EEEccc
Q psy9316 232 FIDVVK 237 (264)
Q Consensus 232 ~~d~~~ 237 (264)
+||...
T Consensus 546 f~d~~~ 551 (893)
T KOG0291|consen 546 FFDIKE 551 (893)
T ss_pred EEEhhh
Confidence 999875
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-26 Score=182.80 Aligned_cols=191 Identities=19% Similarity=0.356 Sum_probs=161.8
Q ss_pred cccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEE
Q psy9316 45 KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124 (264)
Q Consensus 45 ~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vw 124 (264)
+++++|.+.|.++.|++|+++|+++|+||.+.|||.-+.. +...++-....|..++|+|.+ +++++|+-|....||
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn---K~haipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN---KVHAIPLPSSWVMTCAYSPSG-NFVACGGLDNKCSIY 124 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc---ceeEEecCceeEEEEEECCCC-CeEEecCcCceeEEE
Confidence 6789999999999999999999999999999999976422 334455677889999999965 799999999999999
Q ss_pred ECCCCCc------------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCE
Q psy9316 125 DARTQKS------------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDL 180 (264)
Q Consensus 125 d~~~~~~------------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~ 180 (264)
++.+... ...+++++.|.+..+||+.... +...|.+|.+.|.++.+.|.+.+.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~---~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ---QTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce---EEEEecCCcccEEEEecCCCCCCe
Confidence 9986521 1147899999999999997643 234688999999999999988889
Q ss_pred EEEEeCCCcEEEEeCCCCcce--eEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 181 LSTASGDKTVRIWDARTQKSQ--IIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 181 i~s~~~dg~i~iwD~~t~~~~--~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
++||+.|++.++||++.+.+. +..+...+++|+|-|+|.-+++||.|+++++||+|..+...
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a 265 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELA 265 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEe
Confidence 999999999999999998753 23455678999999999999999999999999999855443
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-25 Score=189.35 Aligned_cols=242 Identities=20% Similarity=0.348 Sum_probs=187.0
Q ss_pred cCCCCCceEeecCCCeeEEEeecCceEEecc--ccccccccc---cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccC
Q psy9316 9 HTPKSPEYKLLPSGSQFHLVCKIDDYVKHFN--THNDIKEYQ---AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83 (264)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~---~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~ 83 (264)
|..|...-++.|.|+ +.++.+.|+.+.+|+ +++.+.++. +|++.|.+|+|+||+++++++|.|.++++||+...
T Consensus 189 HskFV~~VRysPDG~-~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGS-RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN 267 (603)
T ss_pred cccceeeEEECCCCC-eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc
Confidence 334456668888876 456788999999986 466777776 89999999999999999999999999999997743
Q ss_pred C----------------------------------------CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEE
Q psy9316 84 G----------------------------------------DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123 (264)
Q Consensus 84 ~----------------------------------------~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~v 123 (264)
. ......++.+|+..|+++..++++ .+|++|+.||.|.-
T Consensus 268 slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~ 346 (603)
T KOG0318|consen 268 SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINS 346 (603)
T ss_pred ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEE
Confidence 1 001123357899999999999866 78999999999999
Q ss_pred EECCCCCcc-----------------------------------------------------------------------
Q psy9316 124 WDARTQKSQ----------------------------------------------------------------------- 132 (264)
Q Consensus 124 wd~~~~~~~----------------------------------------------------------------------- 132 (264)
||..++...
T Consensus 347 W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 347 WDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS 426 (603)
T ss_pred EecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecC
Confidence 997653210
Q ss_pred -----------------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEE
Q psy9316 133 -----------------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST 183 (264)
Q Consensus 133 -----------------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s 183 (264)
..++.|+.|+.+++|.++-. .+..+.....|.++|+.++++|+ ..+||+
T Consensus 427 ~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~-~l~ee~~~~~h~a~iT~vaySpd-~~yla~ 504 (603)
T KOG0318|consen 427 DIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGD-ELKEEAKLLEHRAAITDVAYSPD-GAYLAA 504 (603)
T ss_pred cEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCC-cccceeeeecccCCceEEEECCC-CcEEEE
Confidence 02477888999999988643 22333345679999999999985 679999
Q ss_pred EeCCCcEEEEeCCCCccee---EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeee
Q psy9316 184 ASGDKTVRIWDARTQKSQI---IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRS 257 (264)
Q Consensus 184 ~~~dg~i~iwD~~t~~~~~---~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~ 257 (264)
+...+.+-+||..+++... .++...+++++|+|+.+.+|+||-|..|.+|.+.++... .....+|.+-+.+
T Consensus 505 ~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~---i~iknAH~~gVn~ 578 (603)
T KOG0318|consen 505 GDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH---IIIKNAHLGGVNS 578 (603)
T ss_pred eccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh---eEeccccccCcee
Confidence 9999999999999987532 356788999999999999999999999999999864332 2223455554443
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=201.22 Aligned_cols=207 Identities=27% Similarity=0.434 Sum_probs=164.8
Q ss_pred CceEeecCCCeeEEEeecCceEEeccc--cc--cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCccc
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNT--HN--DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE 89 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~--~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~ 89 (264)
....+.+.|.. ...+..+++++.|.. .+ ..+.+.+|...|.+++|+|+++++++++.|++|++|++..++ ...
T Consensus 163 ~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--~~~ 239 (456)
T KOG0266|consen 163 TCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--RNL 239 (456)
T ss_pred EEEEEcCCCCe-EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--eEE
Confidence 33455666654 556778999888865 22 456668999999999999999999999999999999984333 334
Q ss_pred EEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEecccccee
Q psy9316 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169 (264)
Q Consensus 90 ~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~ 169 (264)
.++++|...|++++|+|++ +++++|+.|++|++||+++++.. ..+.+|.++|.
T Consensus 240 ~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~--------------------------~~l~~hs~~is 292 (456)
T KOG0266|consen 240 KTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECV--------------------------RKLKGHSDGIS 292 (456)
T ss_pred EEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEE--------------------------EeeeccCCceE
Confidence 5688999999999999988 89999999999999999975432 23567999999
Q ss_pred eEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce----eEeecC--ceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCC
Q psy9316 170 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQ----IIATKG--ENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRE 243 (264)
Q Consensus 170 ~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~----~~~~~~--~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~ 243 (264)
.++|+++ +.+|++++.||.|+|||+.++... ...... .+..+.|+|+++++++++.|+.+++||+..+....
T Consensus 293 ~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~- 370 (456)
T KOG0266|consen 293 GLAFSPD-GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG- 370 (456)
T ss_pred EEEECCC-CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCccee-
Confidence 9999875 568888899999999999999831 122222 36789999999999999999999999998765553
Q ss_pred CcccCcccceee
Q psy9316 244 RTLTSRGHLMET 255 (264)
Q Consensus 244 ~~~~~~~h~~~~ 255 (264)
+.++|..+.
T Consensus 371 ---~~~~~~~~~ 379 (456)
T KOG0266|consen 371 ---TYTGHSNLV 379 (456)
T ss_pred ---eecccCCcc
Confidence 455555553
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=196.25 Aligned_cols=205 Identities=27% Similarity=0.474 Sum_probs=164.4
Q ss_pred EeecCCCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe-
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR- 93 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~- 93 (264)
++.|.|-- +++++..|-+.+|+-- +....++.|.++|.++.|++++.++++|..+|.|++|+.+.+ ....+.
T Consensus 103 ~WtPeGRR-Lltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn----nVk~~~a 177 (464)
T KOG0284|consen 103 RWTPEGRR-LLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN----NVKIIQA 177 (464)
T ss_pred EEcCCCce-eEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh----hhHHhhH
Confidence 45565543 4567777877777652 222345799999999999999999999999999999986532 122233
Q ss_pred cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEE
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~ 173 (264)
.|...|.+++|+|.+ ..|+++|.||+|+|||....+... .+++|.-.|.++.|
T Consensus 178 hh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~--------------------------vL~GHgwdVksvdW 230 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEER--------------------------VLRGHGWDVKSVDW 230 (464)
T ss_pred hhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhh--------------------------eeccCCCCcceecc
Confidence 455889999999955 678899999999999998655332 24788889999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCcce--eEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCccc
Q psy9316 174 HATNPDLLSTASGDKTVRIWDARTQKSQ--IIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGH 251 (264)
Q Consensus 174 ~~~~~~~i~s~~~dg~i~iwD~~t~~~~--~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h 251 (264)
+|.. .+|++++.|+.|++||.+++++. +..+...+..+.|+|++++|+++|.|..++++|.+.+ ++..+++||
T Consensus 231 HP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m----kEl~~~r~H 305 (464)
T KOG0284|consen 231 HPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM----KELFTYRGH 305 (464)
T ss_pred CCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh----HHHHHhhcc
Confidence 9964 68999999999999999999863 3456677899999999999999999999999998843 345689999
Q ss_pred ceeeeee
Q psy9316 252 LMETRSL 258 (264)
Q Consensus 252 ~~~~~~~ 258 (264)
.-|++++
T Consensus 306 kkdv~~~ 312 (464)
T KOG0284|consen 306 KKDVTSL 312 (464)
T ss_pred hhhheee
Confidence 9999987
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-25 Score=187.19 Aligned_cols=209 Identities=23% Similarity=0.407 Sum_probs=172.6
Q ss_pred CeeEEEeecCceEEeccc-cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCC-----------------
Q psy9316 23 SQFHLVCKIDDYVKHFNT-HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG----------------- 84 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~----------------- 84 (264)
+.++.++..||.+++|+. +.++.+|..|+++|.+|.|+.+|.+|++++.|+++.+||..+..
T Consensus 247 G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW 326 (524)
T ss_pred CCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence 456788999999999976 57888999999999999999999999999999999999964210
Q ss_pred ---------------------CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC-------------
Q psy9316 85 ---------------------DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK------------- 130 (264)
Q Consensus 85 ---------------------~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~------------- 130 (264)
...+...+.+|.+.|.++.|.|.+ .+|+++|.|+++++|......
T Consensus 327 ~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~ 405 (524)
T KOG0273|consen 327 QSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIY 405 (524)
T ss_pred ecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhhcccee
Confidence 001122356799999999999865 799999999999999864321
Q ss_pred ---------------cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeC
Q psy9316 131 ---------------SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 195 (264)
Q Consensus 131 ---------------~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~ 195 (264)
....+++++.|.++++|+...... ...|..|+.+|++++|+|+ +.++|+|+-||.|.+|+.
T Consensus 406 t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~---i~~f~kH~~pVysvafS~~-g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 406 TIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP---IHTLMKHQEPVYSVAFSPN-GRYLASGSLDGCVHIWST 481 (524)
T ss_pred eEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce---eEeeccCCCceEEEEecCC-CcEEEecCCCCeeEeccc
Confidence 123678899999999999865432 3457899999999999984 689999999999999999
Q ss_pred CCCcce-eEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 196 RTQKSQ-IIATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 196 ~t~~~~-~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
++++.. .....+.+..++|+.+|++|+++-+|+-+++.|++
T Consensus 482 ~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 482 KTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 998753 23345668999999999999999999999999976
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-26 Score=180.18 Aligned_cols=215 Identities=23% Similarity=0.403 Sum_probs=177.3
Q ss_pred eEeecCCCeeEEEeecCceEEecccc---ccccccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCcccEE
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTH---NDIKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNKEVV 91 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~ 91 (264)
-.+.++..+..++|..||.+++|++. +.++.|+.|+..|.++.|++ +++.++++|+|++||+|+.+.+. ...+
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~---Sv~T 142 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN---SVQT 142 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc---ceEe
Confidence 34555655666789999999999753 56889999999999999998 67788889999999999876433 2346
Q ss_pred EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc--------------------ceEEEeecCCCcEEEEEecc
Q psy9316 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--------------------QIMLASGSFDKSVAIFALDK 151 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------------~~~~~~~~~d~~i~i~~~~~ 151 (264)
+.+|+.-|....|+|..+++++++|.|+++++||++.... ..++++|+.|+.|+.||++.
T Consensus 143 f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 143 FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence 8899999999999999999999999999999999986421 23689999999999999875
Q ss_pred CCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee---EeecCceEEEEEcC-CCCEEEEeeCC
Q psy9316 152 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI---IATKGENINITWAP-NGNTIAVGNKE 227 (264)
Q Consensus 152 ~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~---~~~~~~~~~v~~sp-~g~~la~gs~d 227 (264)
-. .+...+.+|.-.|..++|+|....+|+|++-|-+++|||.+.+.... ..+...+..++||+ +..++|..+=|
T Consensus 223 ~r--~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 223 LR--TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred cc--ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccc
Confidence 32 23345689999999999999988999999999999999998665322 22344577799997 56789999999
Q ss_pred CeEEEEEc
Q psy9316 228 DLVTFIDV 235 (264)
Q Consensus 228 ~~i~~~d~ 235 (264)
..+++|+.
T Consensus 301 e~l~Vw~p 308 (311)
T KOG0277|consen 301 ELLYVWNP 308 (311)
T ss_pred cceeeecc
Confidence 99999984
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=185.56 Aligned_cols=221 Identities=22% Similarity=0.339 Sum_probs=178.4
Q ss_pred EeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEe
Q psy9316 28 VCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 105 (264)
Q Consensus 28 ~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 105 (264)
+++.|..++.|+. ++..+.+++|.+.|.+++|+..|++|++++.|-.+++||+++- ........+|...|.+++|-
T Consensus 125 ~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~ 202 (406)
T KOG0295|consen 125 SASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFL 202 (406)
T ss_pred EecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEE
Confidence 4677999999865 5678889999999999999999999999999999999998742 22223356899999999999
Q ss_pred cCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEeccCCCccceEEEecccc
Q psy9316 106 ATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166 (264)
Q Consensus 106 ~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~ 166 (264)
|.+ ++++|+++|.+|+.|++.++-+ ..++++++.|..+++|-....... ..++.|.-
T Consensus 203 P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k---~~lR~hEh 278 (406)
T KOG0295|consen 203 PLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK---AELREHEH 278 (406)
T ss_pred ecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhh---hhhhcccc
Confidence 976 7889999999999999988643 236789999999999987654322 24577888
Q ss_pred ceeeEEEcCCC---------C-----CEEEEEeCCCcEEEEeCCCCccee--EeecCceEEEEEcCCCCEEEEeeCCCeE
Q psy9316 167 SVDQLCWHATN---------P-----DLLSTASGDKTVRIWDARTQKSQI--IATKGENINITWAPNGNTIAVGNKEDLV 230 (264)
Q Consensus 167 ~i~~i~~~~~~---------~-----~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i 230 (264)
+|.+++|.|.. + .++.+++.|++|++||+.++.+.+ ..+..-+..++|+|.|+||+++..|+++
T Consensus 279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktl 358 (406)
T KOG0295|consen 279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTL 358 (406)
T ss_pred ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcE
Confidence 99999988742 2 388999999999999999998743 3455668899999999999999999999
Q ss_pred EEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 231 TFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 231 ~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
++||+.+.++-. ++.+|.+=+.+|
T Consensus 359 rvwdl~~~~cmk----~~~ah~hfvt~l 382 (406)
T KOG0295|consen 359 RVWDLKNLQCMK----TLEAHEHFVTSL 382 (406)
T ss_pred EEEEeccceeee----ccCCCcceeEEE
Confidence 999998765543 344565555443
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=192.34 Aligned_cols=233 Identities=21% Similarity=0.315 Sum_probs=180.7
Q ss_pred eecCCCCCceEeecCCCeeEEEeecCceEEeccc---cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccC
Q psy9316 7 QFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNT---HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83 (264)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~ 83 (264)
..|+....-.+|+|...+++++|+.|+.|++|+. ++++++|.+|..+|.+++|+++|..++++|.|+.+++||+++.
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG 290 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc
Confidence 3456666777899988899999999999999875 6789999999999999999999999999999999999999763
Q ss_pred CCCcccEEEeccc-ccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCc
Q psy9316 84 GDLNKEVVYRGHT-GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKS 143 (264)
Q Consensus 84 ~~~~~~~~~~~h~-~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~ 143 (264)
... ...|. ..+.++.|+|++.+.+++|+.|+.|+.||+++++. ...+++.+.|++
T Consensus 291 -~~~----~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks 365 (503)
T KOG0282|consen 291 -QVL----SRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS 365 (503)
T ss_pred -eEE----EEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc
Confidence 222 22343 35788899999989999999999999999999752 124788899999
Q ss_pred EEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc-----eeEee--cCceEEEEEcC
Q psy9316 144 VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-----QIIAT--KGENINITWAP 216 (264)
Q Consensus 144 i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~-----~~~~~--~~~~~~v~~sp 216 (264)
++||+.+....+........| ...++..+|++ .+++.=+.|+.|.+|.+...-. ....+ .+....+.|||
T Consensus 366 ~riWe~~~~v~ik~i~~~~~h--smP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 366 VRIWENRIPVPIKNIADPEMH--TMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred EEEEEcCCCccchhhcchhhc--cCcceecCCCC-CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 999998765443332222344 35567788854 5777889999999997654321 11222 34567899999
Q ss_pred CCCEEEEeeCCCeEEEEEcccCCCCCCCcccCccc
Q psy9316 217 NGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGH 251 (264)
Q Consensus 217 ~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h 251 (264)
||.+|++|..||.+++||.+. ...+.++++|
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt----~kl~~~lkah 473 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKT----TKLVSKLKAH 473 (503)
T ss_pred CCCeEEeecCCccEEEeechh----hhhhhccccC
Confidence 999999999999999999764 2233456666
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-25 Score=177.81 Aligned_cols=204 Identities=21% Similarity=0.356 Sum_probs=164.8
Q ss_pred cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEE
Q psy9316 43 DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122 (264)
Q Consensus 43 ~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~ 122 (264)
.+..+.+|++.|..+.|+|+|..+++||.|..|.+|++.. ..+...++++|.+.|..+.|.+++ ..++++|.|++++
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g--dceN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG--DCENFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVR 115 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc--cccceeeeccccceeEeeeeccCC-CEEEEecCCceEE
Confidence 3456779999999999999999999999999999998653 344445678999999999999855 6788999999999
Q ss_pred EEECCCCCc--------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEE
Q psy9316 123 IWDARTQKS--------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 182 (264)
Q Consensus 123 vwd~~~~~~--------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~ 182 (264)
.||+++++. ..++.+++.|+++++||++.+..... ...+..+.++.|.. .++-+.
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t----~~~kyqltAv~f~d-~s~qv~ 190 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT----FENKYQLTAVGFKD-TSDQVI 190 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc----cccceeEEEEEecc-ccccee
Confidence 999998753 23678999999999999987654322 11234688899985 456677
Q ss_pred EEeCCCcEEEEeCCCCcc--eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCccccee
Q psy9316 183 TASGDKTVRIWDARTQKS--QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLME 254 (264)
Q Consensus 183 s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~ 254 (264)
+|+-|+.|++||++.... ....+.+.++.+..+|+|.++.+-+-|.++++||++.-.+..-....+.||.++
T Consensus 191 sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn 264 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN 264 (338)
T ss_pred eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhh
Confidence 999999999999988764 334556789999999999999999999999999998755544336667777654
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-25 Score=182.52 Aligned_cols=206 Identities=25% Similarity=0.478 Sum_probs=170.5
Q ss_pred EEEeecCceEEeccc--c----ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccC----------------
Q psy9316 26 HLVCKIDDYVKHFNT--H----NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK---------------- 83 (264)
Q Consensus 26 ~~~~~~d~~~~~~~~--~----~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~---------------- 83 (264)
.++++.|..+++|.- . +.++.-+||+..|-+++..++|.++++||.|.+|++|+....
T Consensus 162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~ 241 (423)
T KOG0313|consen 162 FVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ 241 (423)
T ss_pred EEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhh
Confidence 467899999988743 2 234445699999999999999999999999999999983211
Q ss_pred ------CCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc------------------eEEEeec
Q psy9316 84 ------GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ------------------IMLASGS 139 (264)
Q Consensus 84 ------~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------------------~~~~~~~ 139 (264)
+.......+.+|+.+|.++.|.+ ...+.++|.|.+|+.||+.++... .++++|+
T Consensus 242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gs 319 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGS 319 (423)
T ss_pred hhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecC
Confidence 01112245789999999999986 457889999999999999886531 2688999
Q ss_pred CCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc---eeEeecCceEEEEEcC
Q psy9316 140 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---QIIATKGENINITWAP 216 (264)
Q Consensus 140 ~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~---~~~~~~~~~~~v~~sp 216 (264)
.|..|++||.+.++......++.+|+.-|.++.|+|.+..+|+|++.||++++||.++... .+..+.+.+.+++|+
T Consensus 320 sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~- 398 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN- 398 (423)
T ss_pred CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-
Confidence 9999999999987666666788999999999999999999999999999999999998763 333456789999999
Q ss_pred CCCEEEEeeCCCeEEEEE
Q psy9316 217 NGNTIAVGNKEDLVTFID 234 (264)
Q Consensus 217 ~g~~la~gs~d~~i~~~d 234 (264)
++.++++|++|..++++.
T Consensus 399 ~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 399 EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred CCceEEeccCcceEEEec
Confidence 588999999999999996
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=168.80 Aligned_cols=235 Identities=26% Similarity=0.415 Sum_probs=180.9
Q ss_pred EeecCCCeeEEEeecCceEEeccccc-----ccccc-ccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccE
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHN-----DIKEY-QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV 90 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~~~~-~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~ 90 (264)
.+.|..+.++.+|+.|..+++|++.+ +...+ .+|+..|..++|+|.|++|++||.|.++.+|.-. .+..+...
T Consensus 21 awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~-~~efecv~ 99 (312)
T KOG0645|consen 21 AWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE-DGEFECVA 99 (312)
T ss_pred EeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC-CCceeEEe
Confidence 45666345677899999999998763 11122 3799999999999999999999999999999643 34555566
Q ss_pred EEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc----------------------ceEEEeecCCCcEEEEE
Q psy9316 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS----------------------QIMLASGSFDKSVAIFA 148 (264)
Q Consensus 91 ~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------------------~~~~~~~~~d~~i~i~~ 148 (264)
++++|...|.+++|++.+ ++|+++|+|+.|=+|.+..... .-+++++++|.+|++|.
T Consensus 100 ~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~ 178 (312)
T KOG0645|consen 100 TLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYR 178 (312)
T ss_pred eeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEe
Confidence 789999999999999855 8999999999999998864221 13689999999999998
Q ss_pred eccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCC
Q psy9316 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKED 228 (264)
Q Consensus 149 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~ 228 (264)
...+++.....++.+|...|.++.|++.+ ..+++++.|++++||-..+.- ...+...+..+.|. ...+|+|+.|+
T Consensus 179 ~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~--~~~~sr~~Y~v~W~--~~~IaS~ggD~ 253 (312)
T KOG0645|consen 179 DEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDL--SGMHSRALYDVPWD--NGVIASGGGDD 253 (312)
T ss_pred ecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccCc--chhcccceEeeeec--ccceEeccCCC
Confidence 76666666666788999999999999854 688999999999999765321 12334567789998 67899999999
Q ss_pred eEEEEEcccCCCCC---CCcccCcccceeeeee
Q psy9316 229 LVTFIDVVKSLPPR---ERTLTSRGHLMETRSL 258 (264)
Q Consensus 229 ~i~~~d~~~~~~~~---~~~~~~~~h~~~~~~~ 258 (264)
.|++|.-..+.... .-...-.+|..++-+|
T Consensus 254 ~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV 286 (312)
T KOG0645|consen 254 AIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV 286 (312)
T ss_pred EEEEEEecCCCCCchHHHHHhhhcccccccceE
Confidence 99999866432211 1111235788888775
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=184.72 Aligned_cols=229 Identities=25% Similarity=0.377 Sum_probs=175.4
Q ss_pred EeecCCCeeEEEeecCceEEeccccc------cc------cccccCC----CCEEEEEECCCCCeEEEEECCCcEEEEEe
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHN------DI------KEYQAHG----SKVHSVAWSCDGRRLASGSFDKSVAIFAL 80 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~------~~------~~~~~h~----~~V~~l~~s~~g~~l~s~s~dg~i~v~~~ 80 (264)
.+.|....+..++..|...++|+..+ .. ..+.++. ..|++|+|+.+|..|++|+.||.+++|+.
T Consensus 185 ~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~ 264 (524)
T KOG0273|consen 185 AWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNK 264 (524)
T ss_pred ecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEec
Confidence 44454443444455566666665543 10 1122232 36999999999999999999999999986
Q ss_pred ccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc------------------eEEEeecCCC
Q psy9316 81 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ------------------IMLASGSFDK 142 (264)
Q Consensus 81 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------------------~~~~~~~~d~ 142 (264)
+ +. ....+..|.++|..+.|...+ .++++++.||++.+||..++... ..+++.+.|+
T Consensus 265 ~--G~--l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~ 339 (524)
T KOG0273|consen 265 D--GN--LISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDG 339 (524)
T ss_pred C--ch--hhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCc
Confidence 4 33 234577899999999998755 78999999999999999776421 1478888999
Q ss_pred cEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEEEEcCC---
Q psy9316 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENINITWAPN--- 217 (264)
Q Consensus 143 ~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~~sp~--- 217 (264)
.|.++.+..+. +..++.+|+.+|+++.|+|. +.+|+|++.|++++||.+..... .+..+..++..+.|+|.
T Consensus 340 ~i~V~kv~~~~---P~~t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v 415 (524)
T KOG0273|consen 340 CIHVCKVGEDR---PVKTFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPV 415 (524)
T ss_pred eEEEEEecCCC---cceeeecccCceEEEEECCC-CceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCc
Confidence 99999886543 34567889999999999985 57999999999999999876553 45566778889999984
Q ss_pred ------CCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 218 ------GNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 218 ------g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
+..+++++.|++|++||+..+-+.+ ++|.|.+.|-+|
T Consensus 416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~----~f~kH~~pVysv 458 (524)
T KOG0273|consen 416 TSNPNMNLMLASASFDSTVKLWDVESGVPIH----TLMKHQEPVYSV 458 (524)
T ss_pred cCCCcCCceEEEeecCCeEEEEEccCCceeE----eeccCCCceEEE
Confidence 4678999999999999998766654 688998888776
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-25 Score=198.17 Aligned_cols=204 Identities=26% Similarity=0.452 Sum_probs=165.2
Q ss_pred ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCC-----------CC-----------------cccEEEecccc
Q psy9316 46 EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG-----------DL-----------------NKEVVYRGHTG 97 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~-----------~~-----------------~~~~~~~~h~~ 97 (264)
+|..-...++|..|++|+..||.|-.|..|++|.+...+ .. .....+.+|.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 343334579999999999999999999999999987310 00 01123668999
Q ss_pred cEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEeccCCCccce
Q psy9316 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFALDKKGDLNKE 158 (264)
Q Consensus 98 ~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~ 158 (264)
+|..+.|+|++ ++|+++|.|+++|+|.+++..+ ...|++++.|++-++|...... +.
T Consensus 453 PVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~---Pl 528 (707)
T KOG0263|consen 453 PVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK---PL 528 (707)
T ss_pred ceeeeeecccc-cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC---ch
Confidence 99999999965 7899999999999999987532 2368999999999999876533 23
Q ss_pred EEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 159 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 159 ~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
..+.+|.+.|.++.|+|+ ..++++|+.|.++++||+.++.... ..+.+.+.+++|||+|++||+|+.|+.|.+||+.
T Consensus 529 RifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred hhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 357899999999999995 5799999999999999999998633 3467789999999999999999999999999987
Q ss_pred cCCCCCCCcccCcccceeeeee
Q psy9316 237 KSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 237 ~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
.+.. .++++||+..+.+|
T Consensus 608 ~~~~----v~~l~~Ht~ti~Sl 625 (707)
T KOG0263|consen 608 NGSL----VKQLKGHTGTIYSL 625 (707)
T ss_pred CCcc----hhhhhcccCceeEE
Confidence 6444 35788997777765
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=171.92 Aligned_cols=215 Identities=24% Similarity=0.425 Sum_probs=161.4
Q ss_pred CCceEeecCCCeeEEEeecCceEEecccccccccccc--CCCCEEEEEECCC-CCeEEEEECCCcEEEEEeccCCCCccc
Q psy9316 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQA--HGSKVHSVAWSCD-GRRLASGSFDKSVAIFALDKKGDLNKE 89 (264)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--h~~~V~~l~~s~~-g~~l~s~s~dg~i~v~~~~~~~~~~~~ 89 (264)
.+|.-..|++.++=+.++..-+|-.-.....+.+++. -.+.+..++|++. .+.+++++-||++++||+..+ ..+.
T Consensus 20 ~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--s~Pi 97 (311)
T KOG0277|consen 20 VENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--SKPI 97 (311)
T ss_pred ccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC--Ccch
Confidence 3443333344444343333333322222344444432 3568999999984 567888999999999996543 2344
Q ss_pred EEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEecccccee
Q psy9316 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169 (264)
Q Consensus 90 ~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~ 169 (264)
..++.|+..|.++.|.+.+.+.++++|.|++||+||.+.+.. ..+|.+|...|.
T Consensus 98 ~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S--------------------------v~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 98 HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS--------------------------VQTFNGHNSCIY 151 (311)
T ss_pred hHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc--------------------------eEeecCCccEEE
Confidence 568899999999999998888888999999999999875331 235788999999
Q ss_pred eEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEEEEcC-CCCEEEEeeCCCeEEEEEcccCCCCCCCcc
Q psy9316 170 QLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENINITWAP-NGNTIAVGNKEDLVTFIDVVKSLPPRERTL 246 (264)
Q Consensus 170 ~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~~sp-~g~~la~gs~d~~i~~~d~~~~~~~~~~~~ 246 (264)
...|+|..++++++++.||.+++||++..-. .+..+..++.++.|+. +.+.|++|+.|+.|+.||++..+.+ ..
T Consensus 152 ~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p---l~ 228 (311)
T KOG0277|consen 152 QAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP---LF 228 (311)
T ss_pred EEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc---ce
Confidence 9999999999999999999999999986432 3345566899999997 6678899999999999999986654 45
Q ss_pred cCcccceeeeee
Q psy9316 247 TSRGHLMETRSL 258 (264)
Q Consensus 247 ~~~~h~~~~~~~ 258 (264)
.+.||.-.||.|
T Consensus 229 eL~gh~~AVRkv 240 (311)
T KOG0277|consen 229 ELNGHGLAVRKV 240 (311)
T ss_pred eecCCceEEEEE
Confidence 678999999986
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-24 Score=186.63 Aligned_cols=210 Identities=24% Similarity=0.373 Sum_probs=175.5
Q ss_pred EeecCCCeeEEEeecCceEEec--cccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHF--NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG 94 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~ 94 (264)
.+++..++ .++++-|..|+.| ++.++++.|..|.+.|.|++.+|...+++++|.|-+|++|+.+. ......++++
T Consensus 62 kfiaRknW-iv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~--~wa~~qtfeG 138 (794)
T KOG0276|consen 62 KFIARKNW-IVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN--EWACEQTFEG 138 (794)
T ss_pred eeeeccce-EEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC--ceeeeeEEcC
Confidence 55566554 4567778888886 56788999999999999999999999999999999999999874 3445567999
Q ss_pred ccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc---------------------ceEEEeecCCCcEEEEEeccCC
Q psy9316 95 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---------------------QIMLASGSFDKSVAIFALDKKG 153 (264)
Q Consensus 95 h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---------------------~~~~~~~~~d~~i~i~~~~~~~ 153 (264)
|+.-|.+++|.|.+.+.++|+|-|++|++|.+-+... ...+++|+.|..+++||.++..
T Consensus 139 H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~ 218 (794)
T KOG0276|consen 139 HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS 218 (794)
T ss_pred cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH
Confidence 9999999999999999999999999999999865321 2368999999999999988765
Q ss_pred CccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce--eEeecCceEEEEEcCCCCEEEEeeCCCeEE
Q psy9316 154 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--IIATKGENINITWAPNGNTIAVGNKEDLVT 231 (264)
Q Consensus 154 ~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~--~~~~~~~~~~v~~sp~g~~la~gs~d~~i~ 231 (264)
+.. ++.+|...|..++|+|.- -+|+||++||+++||+..|.+.. +....+++.+|+-.+.+..+++|..+|.+.
T Consensus 219 CV~---TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 219 CVQ---TLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred HHH---HhhcccccceEEEecCCC-cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 543 468999999999999854 58999999999999999987642 233456789999889999999999888866
Q ss_pred EE
Q psy9316 232 FI 233 (264)
Q Consensus 232 ~~ 233 (264)
+=
T Consensus 295 v~ 296 (794)
T KOG0276|consen 295 VK 296 (794)
T ss_pred EE
Confidence 54
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=165.50 Aligned_cols=207 Identities=23% Similarity=0.360 Sum_probs=169.2
Q ss_pred CCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccE
Q psy9316 22 GSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV 99 (264)
Q Consensus 22 ~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v 99 (264)
+++.-++|+-|..+|+|++. .++++|.+|...|..++.+.|...+++++-|..+.+||+++.... ..+.+|.+.|
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~---Rr~rgH~aqV 104 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVD---RRFRGHLAQV 104 (307)
T ss_pred CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeee---eeccccccee
Confidence 45678899999999999874 678999999999999999999999999999999999999864332 4588999999
Q ss_pred EeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCCccceEE
Q psy9316 100 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEVV 160 (264)
Q Consensus 100 ~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~ 160 (264)
..+.|+. ....+++||-|..+++||-++.... ..+++|+.||+++.||++........
T Consensus 105 NtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy-- 181 (307)
T KOG0316|consen 105 NTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY-- 181 (307)
T ss_pred eEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhh--
Confidence 9999986 4478999999999999999875321 24789999999999999876543322
Q ss_pred EeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--Eeec--CceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IATK--GENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 161 ~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~--~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
. ..+|++++|+++. ...+.++.|+++++.|-++++... +.+. ..-...+++....+++.||.||.+++||+.
T Consensus 182 -~--g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 182 -F--GHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred -c--CCcceeEEecCCC-CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEec
Confidence 2 3589999999865 555567999999999999987421 2222 223567788999999999999999999987
Q ss_pred cC
Q psy9316 237 KS 238 (264)
Q Consensus 237 ~~ 238 (264)
++
T Consensus 258 d~ 259 (307)
T KOG0316|consen 258 DE 259 (307)
T ss_pred cc
Confidence 64
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=192.96 Aligned_cols=214 Identities=17% Similarity=0.212 Sum_probs=165.8
Q ss_pred EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCcccEEEe
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNKEVVYR 93 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~ 93 (264)
.+.|.....+++++.|+.+++|+. ...+..+.+|.+.|.+++|+| ++.+|++|+.|+.|++||+.... . ...+.
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~--~~~~~ 615 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-S--IGTIK 615 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-E--EEEEe
Confidence 344443455678899999999975 456778889999999999997 78999999999999999986422 1 12344
Q ss_pred cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEeccCC-
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFALDKKG- 153 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~- 153 (264)
. ...+.++.|.+.++.++++|+.||.|++||+++.+. ...+++++.|+.|++|+++...
T Consensus 616 ~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 616 T-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred c-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcc
Confidence 3 367889999876778999999999999999976431 1246889999999999986431
Q ss_pred --CccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE---------------eecCceEEEEEcC
Q psy9316 154 --DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII---------------ATKGENINITWAP 216 (264)
Q Consensus 154 --~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~---------------~~~~~~~~v~~sp 216 (264)
.......+.+|...+..++|+|. +.+|++|+.||.|++|+......... .....+.+++|+|
T Consensus 695 ~~~~~~l~~~~gh~~~i~~v~~s~~-~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 695 GINETPLHSFMGHTNVKNFVGLSVS-DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred ccCCcceEEEcCCCCCeeEEEEcCC-CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 11233467789999999999986 46999999999999999865432110 0112467899999
Q ss_pred CCCEEEEeeCCCeEEEEEc
Q psy9316 217 NGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 217 ~g~~la~gs~d~~i~~~d~ 235 (264)
++..|++|+.||.|++||.
T Consensus 774 ~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCeEEEecCCCcEEEEec
Confidence 9999999999999999985
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=174.26 Aligned_cols=204 Identities=25% Similarity=0.373 Sum_probs=165.0
Q ss_pred ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcE
Q psy9316 42 NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 121 (264)
Q Consensus 42 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i 121 (264)
+..+.+++|.+.|.|+++.|-.+++++|+.|++|+|||+.. +.+. ..+.+|...|..+++++.. -++++++.|+.|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~Lk--ltltGhi~~vr~vavS~rH-pYlFs~gedk~V 217 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLK--LTLTGHIETVRGVAVSKRH-PYLFSAGEDKQV 217 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEE--EeecchhheeeeeeecccC-ceEEEecCCCee
Confidence 45677899999999999999999999999999999999975 4333 4577899999999999755 578899999999
Q ss_pred EEEECCCCCc-------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEE
Q psy9316 122 RIWDARTQKS-------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 182 (264)
Q Consensus 122 ~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~ 182 (264)
+.||++..+. ...+++|+-|..+++||++.+.. ...+.+|..+|..+.+.|.++. ++
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~---V~~l~GH~~~V~~V~~~~~dpq-vi 293 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS---VHVLSGHTNPVASVMCQPTDPQ-VI 293 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce---EEEecCCCCcceeEEeecCCCc-eE
Confidence 9999987652 22578999999999999987644 3467899999999999987764 56
Q ss_pred EEeCCCcEEEEeCCCCccee--EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 183 TASGDKTVRIWDARTQKSQI--IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 183 s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
+|+.|++|++||++.++... ..+...+.+++.+|....+|+++.|+. +-|++.++... ..+-||++.+-+|
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dni-k~w~~p~g~f~----~nlsgh~~iintl 366 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNI-KQWKLPEGEFL----QNLSGHNAIINTL 366 (460)
T ss_pred EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccc-eeccCCccchh----hccccccceeeee
Confidence 89999999999999987522 234556788999999999999997765 88997654332 3456676665544
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=162.89 Aligned_cols=209 Identities=26% Similarity=0.453 Sum_probs=165.6
Q ss_pred eEeecCCCeeEEEeecCceEEecccc----ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEE
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTH----NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~ 91 (264)
..+.|.|. ++.+++.|..+-+|... +.+.+++||...|.|++|+++|.+||+++.|+.+-+|+++.........+
T Consensus 67 vAwsp~g~-~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV 145 (312)
T KOG0645|consen 67 VAWSPHGR-YLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV 145 (312)
T ss_pred eeecCCCc-EEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee
Confidence 34556664 66778888888888654 67888999999999999999999999999999999999987666666677
Q ss_pred EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC-----------c-----------ceEEEeecCCCcEEEEEe
Q psy9316 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-----------S-----------QIMLASGSFDKSVAIFAL 149 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~-----------~-----------~~~~~~~~~d~~i~i~~~ 149 (264)
+..|...|..+.|||.. .+|+|+|.|.+||+|+-.... . ..-+++++.|+++.||..
T Consensus 146 L~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 146 LQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred eccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 89999999999999954 799999999999999765211 0 113678889999999975
Q ss_pred ccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc----c-----eeEeecCceEEEEEcCC-CC
Q psy9316 150 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK----S-----QIIATKGENINITWAPN-GN 219 (264)
Q Consensus 150 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~----~-----~~~~~~~~~~~v~~sp~-g~ 219 (264)
... + ...|...++.+.|. ...|+|++.|+.|++|--.... . ....+...++++.|+|. .+
T Consensus 225 ~~~--~-----~~~~sr~~Y~v~W~---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~ 294 (312)
T KOG0645|consen 225 YTD--L-----SGMHSRALYDVPWD---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSN 294 (312)
T ss_pred ccC--c-----chhcccceEeeeec---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCC
Confidence 421 1 13466789999997 3589999999999999655421 0 11234456889999995 78
Q ss_pred EEEEeeCCCeEEEEEcc
Q psy9316 220 TIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 220 ~la~gs~d~~i~~~d~~ 236 (264)
.|++|+.||.+++|.+.
T Consensus 295 ~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 295 RLASGGDDGIVNFWELE 311 (312)
T ss_pred ceeecCCCceEEEEEec
Confidence 89999999999999863
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-24 Score=176.89 Aligned_cols=201 Identities=20% Similarity=0.354 Sum_probs=162.9
Q ss_pred EEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEE
Q psy9316 27 LVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 104 (264)
Q Consensus 27 ~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~ 104 (264)
.++.-|++|++|+.. .+.+.+.||.+.|.||+|. .+.|++||.|.+|++||.++....+ ++-.|...|..+.|
T Consensus 211 VSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf 285 (499)
T KOG0281|consen 211 VSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRF 285 (499)
T ss_pred hcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh---HHhhhcceeEEEEE
Confidence 456679999999764 5677889999999999995 6699999999999999998643322 34579999999999
Q ss_pred ecCCCCeEEEEeCCCcEEEEECCCCCc--------------------ceEEEeecCCCcEEEEEeccCCCccceEEEecc
Q psy9316 105 HATNPDLLSTASGDKTVRIWDARTQKS--------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164 (264)
Q Consensus 105 ~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h 164 (264)
+ ..+++++|.|..+.+||+.+... ..++++++.|.+|++|+..+.-.. .++.+|
T Consensus 286 ~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efv---Rtl~gH 359 (499)
T KOG0281|consen 286 S---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFV---RTLNGH 359 (499)
T ss_pred e---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeee---hhhhcc
Confidence 6 36899999999999999987532 126899999999999998653222 246799
Q ss_pred ccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce--eEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 165 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--IIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 165 ~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~--~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
..+|-++.+ ++.+++||+.|.+|++||++.+.+. ++.+..-+.++.|. .+.+++|.-||.|++||+.+++.++
T Consensus 360 kRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 360 KRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPR 434 (499)
T ss_pred cccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCc
Confidence 999998876 4579999999999999999999863 33445556778886 7889999999999999999888776
Q ss_pred C
Q psy9316 243 E 243 (264)
Q Consensus 243 ~ 243 (264)
.
T Consensus 435 a 435 (499)
T KOG0281|consen 435 A 435 (499)
T ss_pred c
Confidence 4
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=168.95 Aligned_cols=212 Identities=23% Similarity=0.339 Sum_probs=167.3
Q ss_pred EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCC--------
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDL-------- 86 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~-------- 86 (264)
.+.| ...+..+++.|+...+|+. ++..-++.+|++.|.++.|+.||.+|++|..+|.|+||...+....
T Consensus 71 sl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~ 149 (399)
T KOG0296|consen 71 SLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE 149 (399)
T ss_pred EeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccC
Confidence 4455 4455667788888777765 4556677899999999999999999999999999999986642110
Q ss_pred -------------------------------cccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc---
Q psy9316 87 -------------------------------NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--- 132 (264)
Q Consensus 87 -------------------------------~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--- 132 (264)
....++.+|+.++++=.|.|++ ..++++..||+|++||.++++..
T Consensus 150 dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~ 228 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKI 228 (399)
T ss_pred ceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEe
Confidence 1123457899999999999975 67779999999999999875310
Q ss_pred ----------------------------------------------------------------------eEEEeecCCC
Q psy9316 133 ----------------------------------------------------------------------IMLASGSFDK 142 (264)
Q Consensus 133 ----------------------------------------------------------------------~~~~~~~~d~ 142 (264)
.++++|+-||
T Consensus 229 ~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG 308 (399)
T KOG0296|consen 229 TQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDG 308 (399)
T ss_pred cccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccc
Confidence 0357888999
Q ss_pred cEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE--eecCceEEEEEcCCCCE
Q psy9316 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII--ATKGENINITWAPNGNT 220 (264)
Q Consensus 143 ~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~--~~~~~~~~v~~sp~g~~ 220 (264)
+|.|||+.... ....-.|..+|..+.|-+ ..++++++.+|.|+.||.++++.... .+...+..++++|+++.
T Consensus 309 ~i~iyD~a~~~----~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~ 382 (399)
T KOG0296|consen 309 TIAIYDLAAST----LRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRL 382 (399)
T ss_pred eEEEEecccch----hheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcE
Confidence 99999975421 122346889999999986 46788899999999999999986433 45667999999999999
Q ss_pred EEEeeCCCeEEEEEcc
Q psy9316 221 IAVGNKEDLVTFIDVV 236 (264)
Q Consensus 221 la~gs~d~~i~~~d~~ 236 (264)
++++|.|++.++|++.
T Consensus 383 vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 383 VVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEecCCCeEEEEecC
Confidence 9999999999999974
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=181.13 Aligned_cols=206 Identities=18% Similarity=0.288 Sum_probs=151.1
Q ss_pred ceEeecCCCCCceEeecCCCeeEEEeecCceEEeccccc---------cccccccCCCCEEEEEECCCC-CeEEEEECCC
Q psy9316 4 PVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHN---------DIKEYQAHGSKVHSVAWSCDG-RRLASGSFDK 73 (264)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~~~~h~~~V~~l~~s~~g-~~l~s~s~dg 73 (264)
|.+..|+...-...+.|.+++.+++++.|+.|++|+..+ .+..+.+|...|.+++|+|++ ++|++|+.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 455555544456688885556778899999999997642 356788999999999999975 6999999999
Q ss_pred cEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCC
Q psy9316 74 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKG 153 (264)
Q Consensus 74 ~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~ 153 (264)
+|++||+.... ....+.+|...|.+++|+|++ .+|++++.||+|++||+++++...
T Consensus 149 tVrIWDl~tg~---~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~-------------------- 204 (493)
T PTZ00421 149 VVNVWDVERGK---AVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVS-------------------- 204 (493)
T ss_pred EEEEEECCCCe---EEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEE--------------------
Confidence 99999987532 234567899999999999954 789999999999999998754211
Q ss_pred CccceEEEeccccc-eeeEEEcCCCCCEEEEE---eCCCcEEEEeCCCCcceeEe---ec-CceEEEEEcCCCCEEEEee
Q psy9316 154 DLNKEVVYRGHTGS-VDQLCWHATNPDLLSTA---SGDKTVRIWDARTQKSQIIA---TK-GENINITWAPNGNTIAVGN 225 (264)
Q Consensus 154 ~~~~~~~~~~h~~~-i~~i~~~~~~~~~i~s~---~~dg~i~iwD~~t~~~~~~~---~~-~~~~~v~~sp~g~~la~gs 225 (264)
.+.+|... +..+.|.+....++.+| +.|+.|++||+++....... .. ..+....|+|++++|++|+
T Consensus 205 ------tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 205 ------SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred ------EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 12344433 34567777554444433 35899999999875432221 11 2244567899999998887
Q ss_pred -CCCeEEEEEcccCC
Q psy9316 226 -KEDLVTFIDVVKSL 239 (264)
Q Consensus 226 -~d~~i~~~d~~~~~ 239 (264)
.|+.|++||++++.
T Consensus 279 kgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 279 KGEGNIRCFELMNER 293 (493)
T ss_pred eCCCeEEEEEeeCCc
Confidence 59999999998754
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=192.43 Aligned_cols=212 Identities=20% Similarity=0.327 Sum_probs=163.7
Q ss_pred EeecCCCeeEEEeecCceEEecccccc----------ccccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCC
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHND----------IKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGD 85 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~~----------~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~ 85 (264)
.+.|.+. +.++++.|+.+++|+.... ...+ .+.+.|.+++|++ ++.+|++++.||+|++||+....
T Consensus 490 ~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~- 566 (793)
T PLN00181 490 GFDRDGE-FFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ- 566 (793)
T ss_pred EECCCCC-EEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-
Confidence 5556554 5678899999999975321 1122 3456899999987 57899999999999999986422
Q ss_pred CcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEE
Q psy9316 86 LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAI 146 (264)
Q Consensus 86 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i 146 (264)
....+.+|...|.+++|+|.++.+|++|+.||+|++||++++.. ...+++|+.|+.|++
T Consensus 567 --~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~i 644 (793)
T PLN00181 567 --LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYY 644 (793)
T ss_pred --EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEE
Confidence 23456789999999999987778999999999999999986431 225788999999999
Q ss_pred EEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc------c--eeEeecCceEEEEEcCCC
Q psy9316 147 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK------S--QIIATKGENINITWAPNG 218 (264)
Q Consensus 147 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~------~--~~~~~~~~~~~v~~sp~g 218 (264)
||++.... ....+.+|...|..+.|. ++..|++++.|++|++||++... . ....+...+..++|+|++
T Consensus 645 wD~~~~~~--~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~ 720 (793)
T PLN00181 645 YDLRNPKL--PLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD 720 (793)
T ss_pred EECCCCCc--cceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC
Confidence 99875331 123457899999999996 35688999999999999997532 1 111233456789999999
Q ss_pred CEEEEeeCCCeEEEEEccc
Q psy9316 219 NTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 219 ~~la~gs~d~~i~~~d~~~ 237 (264)
.+|++|+.|+.+++|+...
T Consensus 721 ~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 721 GYIATGSETNEVFVYHKAF 739 (793)
T ss_pred CEEEEEeCCCEEEEEECCC
Confidence 9999999999999999754
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=181.55 Aligned_cols=224 Identities=18% Similarity=0.335 Sum_probs=182.4
Q ss_pred eEeecCCCCCceEeecCCCeeEEEeecCceEEec--cccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEecc
Q psy9316 5 VIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHF--NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDK 82 (264)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~ 82 (264)
+++-|.+...-..|.|+-... +.+-..|.+.+| ++...++.|.-..-+|.+..|-+..+++++|+.|..|+||++++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~-la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWI-LAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred HhhccCCceeeeecCCCCceE-EEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 344566666666788998764 455667877666 45677888888888999999999999999999999999999875
Q ss_pred CCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC---------------------cceEEEeecCC
Q psy9316 83 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK---------------------SQIMLASGSFD 141 (264)
Q Consensus 83 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~---------------------~~~~~~~~~~d 141 (264)
.++...+++|.+-+.+++.||..+ +++++|.|.+|++||-+... ....+++++.|
T Consensus 87 ---~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 87 ---GEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred ---ceeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 345567999999999999999775 77799999999999987642 22358999999
Q ss_pred CcEEEEEeccCCCccceEEEeccccceeeEEEcCCC-CCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEEEEcCCC
Q psy9316 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN-PDLLSTASGDKTVRIWDARTQKS--QIIATKGENINITWAPNG 218 (264)
Q Consensus 142 ~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~-~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~~sp~g 218 (264)
+++++|.+... ...+++.+|..+|+++++-+-+ .-+++||+.|.+++|||..++.+ .+..+...+..+.|.|.-
T Consensus 163 rTVKVWslgs~---~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 163 RTVKVWSLGSP---HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred ccEEEEEcCCC---CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC
Confidence 99999998543 3456788999999999997632 34889999999999999999986 233455556778899999
Q ss_pred CEEEEeeCCCeEEEEEcc
Q psy9316 219 NTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 219 ~~la~gs~d~~i~~~d~~ 236 (264)
..+++||.||++++|...
T Consensus 240 piiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSK 257 (794)
T ss_pred cEEEEecCCccEEEecCc
Confidence 999999999999999854
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=187.58 Aligned_cols=186 Identities=19% Similarity=0.344 Sum_probs=142.1
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEE
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~v 123 (264)
++.|.||.+.|.+|.|+ ..++|+++|.|+++++|.+.... ...+| .|...|+|++|+|.|+++|++||-||.++|
T Consensus 362 ~~ef~GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~---CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRi 436 (712)
T KOG0283|consen 362 FCEFKGHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKE---CLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRL 436 (712)
T ss_pred hhhhhccchhheecccc-cCCeeEeccccccEEeecCCCcc---eeeEE-ecCCeeEEEEecccCCCcEeecccccceEE
Confidence 34689999999999998 56789999999999999875322 22334 599999999999999999999999999999
Q ss_pred EECCCCCc------------------ceEEEeecCCCcEEEEEeccCCCccceEEE-------eccccceeeEEEcCCCC
Q psy9316 124 WDARTQKS------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVY-------RGHTGSVDQLCWHATNP 178 (264)
Q Consensus 124 wd~~~~~~------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~-------~~h~~~i~~i~~~~~~~ 178 (264)
|++...+. ....++|+++|.+++|+.....- ....+. ..|. +|+.+.+.|.+.
T Consensus 437 WsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~-~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 437 WSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL-VSDFHIRLHNKKKKQGK-RITGLQFFPGDP 514 (712)
T ss_pred eecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeE-EEeeeEeeccCccccCc-eeeeeEecCCCC
Confidence 99865431 22578899999999998643211 111111 1233 899999999777
Q ss_pred CEEEEEeCCCcEEEEeCCCCcc--eeEeec--CceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 179 DLLSTASGDKTVRIWDARTQKS--QIIATK--GENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 179 ~~i~s~~~dg~i~iwD~~t~~~--~~~~~~--~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
+.++..+.|..|+|||.+.... .+.... ..-....|+.||+++++|+.|..|++|+..
T Consensus 515 ~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 515 DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred CeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 6555568999999999977654 222221 223568899999999999999999999964
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=181.31 Aligned_cols=223 Identities=25% Similarity=0.348 Sum_probs=176.1
Q ss_pred EEeecCceEEecccccc-ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCc-ccEEEecccccEEeEEE
Q psy9316 27 LVCKIDDYVKHFNTHND-IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN-KEVVYRGHTGSVDQLCW 104 (264)
Q Consensus 27 ~~~~~d~~~~~~~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~-~~~~~~~h~~~v~~i~~ 104 (264)
.++.-..-+|+|+.+.. ...+.+|...|.+|....+|.+|++||.|.++++|-++.+.... ......+|++.|.++++
T Consensus 340 aVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~ 419 (775)
T KOG0319|consen 340 AVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG 419 (775)
T ss_pred EEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee
Confidence 34555556777765433 34678999999999966688999999999999999885432211 11235689999999999
Q ss_pred ecCCCCeEEEEeCCCcEEEEECCCCC----------------------------cceEEEeecCCCcEEEEEeccCCCcc
Q psy9316 105 HATNPDLLSTASGDKTVRIWDARTQK----------------------------SQIMLASGSFDKSVAIFALDKKGDLN 156 (264)
Q Consensus 105 ~~~~~~~l~s~s~dg~i~vwd~~~~~----------------------------~~~~~~~~~~d~~i~i~~~~~~~~~~ 156 (264)
+..+..+|+++|.|+++++|++...+ +..++++|+.|++.+||++.. ..
T Consensus 420 ~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~---~~ 496 (775)
T KOG0319|consen 420 SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ---LR 496 (775)
T ss_pred cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC---ce
Confidence 87777899999999999999987521 123689999999999999872 33
Q ss_pred ceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--EeecCceEEEEEcCCCCEEEEeeCCCeEEEEE
Q psy9316 157 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IATKGENINITWAPNGNTIAVGNKEDLVTFID 234 (264)
Q Consensus 157 ~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d 234 (264)
..-++++|+.+|.++.|+|.+ .+++|++.|++|+||.+.+..+.. ..+...+..+.|-.+|+.|+++++||.+++|+
T Consensus 497 l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 497 LLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred EEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 345789999999999999854 689999999999999999998733 33566788999999999999999999999999
Q ss_pred cccCCCCCCCcccCcccceeeee
Q psy9316 235 VVKSLPPRERTLTSRGHLMETRS 257 (264)
Q Consensus 235 ~~~~~~~~~~~~~~~~h~~~~~~ 257 (264)
+.+.- +..++-+|+--+=+
T Consensus 576 ikt~e----C~~tlD~H~DrvWa 594 (775)
T KOG0319|consen 576 IKTNE----CEMTLDAHNDRVWA 594 (775)
T ss_pred ccchh----hhhhhhhccceeEE
Confidence 98644 44677777655433
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=181.95 Aligned_cols=210 Identities=28% Similarity=0.386 Sum_probs=163.5
Q ss_pred ecCCCCCceEeecCCCeeEEEeecCceEEeccc---cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCC
Q psy9316 8 FHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNT---HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG 84 (264)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~ 84 (264)
-|+.......+.|.+. .++.++.|..+|+|+. ...++++.+|...|++++|+|+++.|++|+.|++|++||+.. +
T Consensus 201 ~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~ 278 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-G 278 (456)
T ss_pred ccccceeeeEECCCCc-EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-C
Confidence 4556667778888886 6788999999999987 356789999999999999999999999999999999999875 2
Q ss_pred CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEecc
Q psy9316 85 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164 (264)
Q Consensus 85 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h 164 (264)
.....+.+|...|.+++|.+++ +++++++.|+.+++||+.++... .. ..+.++
T Consensus 279 --~~~~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~-~~-----------------------~~~~~~ 331 (456)
T KOG0266|consen 279 --ECVRKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL-CL-----------------------KLLSGA 331 (456)
T ss_pred --eEEEeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee-ee-----------------------ecccCC
Confidence 2335688999999999999855 78888999999999999876532 00 011122
Q ss_pred cc--ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--ecC---ceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 165 TG--SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--TKG---ENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 165 ~~--~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~~~---~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.. ++..++|+|+ +.+++++..|+++++||+......... +.. ...+...++.+.++.+|+.|+.|++||...
T Consensus 332 ~~~~~~~~~~fsp~-~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 332 ENSAPVTSVQFSPN-GKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred CCCCceeEEEECCC-CcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 22 6899999985 578889999999999999987643222 222 233455688999999999999999999875
Q ss_pred CCCCCCCcccCccc
Q psy9316 238 SLPPRERTLTSRGH 251 (264)
Q Consensus 238 ~~~~~~~~~~~~~h 251 (264)
+. ......||
T Consensus 411 ~~----~~~~l~~h 420 (456)
T KOG0266|consen 411 GG----ILQRLEGH 420 (456)
T ss_pred cc----hhhhhcCC
Confidence 22 22345566
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-22 Score=180.17 Aligned_cols=206 Identities=15% Similarity=0.284 Sum_probs=148.4
Q ss_pred eecCceEEeccccc--cccccccCCCCEEEEEECCC-CCeEEEEECCCcEEEEEeccCCCC-----cccEEEecccccEE
Q psy9316 29 CKIDDYVKHFNTHN--DIKEYQAHGSKVHSVAWSCD-GRRLASGSFDKSVAIFALDKKGDL-----NKEVVYRGHTGSVD 100 (264)
Q Consensus 29 ~~~d~~~~~~~~~~--~~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~v~~~~~~~~~-----~~~~~~~~h~~~v~ 100 (264)
++.++.+++|+... .+..+.+|.+.|.+++|+|+ +++|++|+.|++|++|++...+.. .....+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 34567788886543 45678899999999999996 789999999999999998643211 11234678999999
Q ss_pred eEEEecCCCCeEEEEeCCCcEEEEECCCCCcc------------------eEEEeecCCCcEEEEEeccCCCccceEEEe
Q psy9316 101 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQ------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYR 162 (264)
Q Consensus 101 ~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~ 162 (264)
+++|+|.+..++++++.|++|++||+++++.. .++++++.|+.|+|||++.... ...+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~---i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI---ASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE---EEEEe
Confidence 99999987667789999999999999876421 2467788899999999876432 23467
Q ss_pred ccccceeeE-----EEcCCCCCEEEEEeCCC----cEEEEeCCCCc-c-eeEeecCc--eEEEEE-cCCCCEEEEeeCCC
Q psy9316 163 GHTGSVDQL-----CWHATNPDLLSTASGDK----TVRIWDARTQK-S-QIIATKGE--NINITW-APNGNTIAVGNKED 228 (264)
Q Consensus 163 ~h~~~i~~i-----~~~~~~~~~i~s~~~dg----~i~iwD~~t~~-~-~~~~~~~~--~~~v~~-sp~g~~la~gs~d~ 228 (264)
+|.+.+... .|+++ ..+|++++.|+ .|+|||+++.. . ........ .....| .++|.++++|+.|+
T Consensus 207 gH~g~~~s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred cccCCceeEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 787655432 23343 45677766664 79999999643 2 22222222 222234 45689999999999
Q ss_pred eEEEEEcccC
Q psy9316 229 LVTFIDVVKS 238 (264)
Q Consensus 229 ~i~~~d~~~~ 238 (264)
.|++|++..+
T Consensus 286 tIr~~e~~~~ 295 (568)
T PTZ00420 286 NCRYYQHSLG 295 (568)
T ss_pred eEEEEEccCC
Confidence 9999998754
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-23 Score=162.43 Aligned_cols=209 Identities=27% Similarity=0.407 Sum_probs=166.5
Q ss_pred EEEeecCceEEecccc-----ccccccccCCCCEEEEEECC--CCCeEEEEECCCcEEEEEeccCCCCcccEEEeccccc
Q psy9316 26 HLVCKIDDYVKHFNTH-----NDIKEYQAHGSKVHSVAWSC--DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 98 (264)
Q Consensus 26 ~~~~~~d~~~~~~~~~-----~~~~~~~~h~~~V~~l~~s~--~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~ 98 (264)
+.+|+-|+.||+|... ..+.++.+|.++|..++|.. .|.+|+++++||.|.+|.... +...+...+..|.+.
T Consensus 26 lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~-g~w~k~~e~~~h~~S 104 (299)
T KOG1332|consen 26 LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN-GRWTKAYEHAAHSAS 104 (299)
T ss_pred eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC-Cchhhhhhhhhhccc
Confidence 4678999999999653 34668899999999999975 799999999999999998653 455555556789999
Q ss_pred EEeEEEecCC-CCeEEEEeCCCcEEEEECCCCCc------------------------------------ceEEEeecCC
Q psy9316 99 VDQLCWHATN-PDLLSTASGDKTVRIWDARTQKS------------------------------------QIMLASGSFD 141 (264)
Q Consensus 99 v~~i~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~------------------------------------~~~~~~~~~d 141 (264)
|.+++|-|.+ +-.|++++.||.|.+.+.+.... ..-+++|+.|
T Consensus 105 VNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcD 184 (299)
T KOG1332|consen 105 VNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD 184 (299)
T ss_pred ceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCc
Confidence 9999999865 34778899999999988765410 0137899999
Q ss_pred CcEEEEEeccCCCccceEEEeccccceeeEEEcCCC---CCEEEEEeCCCcEEEEeCCCCc-c----eeEeecCceEEEE
Q psy9316 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN---PDLLSTASGDKTVRIWDARTQK-S----QIIATKGENINIT 213 (264)
Q Consensus 142 ~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~---~~~i~s~~~dg~i~iwD~~t~~-~----~~~~~~~~~~~v~ 213 (264)
..++||..... ......++.+|.+-|..++|.|.. ...|+|+++||.+.||-.+... . .+...+..+.+++
T Consensus 185 n~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vS 263 (299)
T KOG1332|consen 185 NLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVS 263 (299)
T ss_pred cceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEE
Confidence 99999998754 333444578999999999999964 3579999999999999665321 1 1122345688999
Q ss_pred EcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 214 WAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 214 ~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
||+.|+.|+++..|+.+++|.-+
T Consensus 264 WS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 264 WSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EeccccEEEEecCCcEEEEEEeC
Confidence 99999999999999999999744
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=168.78 Aligned_cols=221 Identities=21% Similarity=0.326 Sum_probs=182.0
Q ss_pred EeecCCCCCceEeecCCCeeEEEeecCceEEecccc---ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEecc
Q psy9316 6 IQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTH---NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDK 82 (264)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~ 82 (264)
|+.|+..+-+..+-++|- .+++|+.|-.++.|+.. .+++...+|...|.++.|-|-|.+|++++.|.+|+.|+++.
T Consensus 146 LrGHt~sv~di~~~a~Gk-~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t 224 (406)
T KOG0295|consen 146 LRGHTDSVFDISFDASGK-YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT 224 (406)
T ss_pred hhccccceeEEEEecCcc-EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc
Confidence 445555556667777774 56789999888888764 46778889999999999999999999999999999999976
Q ss_pred CCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------------------
Q psy9316 83 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS------------------------------- 131 (264)
Q Consensus 83 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~------------------------------- 131 (264)
+.. ..++.+|...|.-+..+. ++.++++++.|.++++|-+.+.++
T Consensus 225 -g~c--v~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~ 300 (406)
T KOG0295|consen 225 -GYC--VKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS 300 (406)
T ss_pred -cee--EEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC
Confidence 322 245789999998888875 558999999999999998877521
Q ss_pred ---ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce--eEeec
Q psy9316 132 ---QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--IIATK 206 (264)
Q Consensus 132 ---~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~--~~~~~ 206 (264)
...+.+++.|++|++|+++.... ..++.+|...|..++|+| ++.+|+|+..|+++++||++++++. ...++
T Consensus 301 ~~~~~~l~s~SrDktIk~wdv~tg~c---L~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 301 TNGGQVLGSGSRDKTIKIWDVSTGMC---LFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred CCCccEEEeecccceEEEEeccCCeE---EEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCc
Confidence 02567888999999999987543 346789999999999998 5689999999999999999999863 33556
Q ss_pred CceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q psy9316 207 GENINITWAPNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 207 ~~~~~v~~sp~g~~la~gs~d~~i~~~d~ 235 (264)
..+.+++|..+..++++|+-|-.+++|..
T Consensus 377 hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 377 HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeEEEecCCCCceEEeccccceeeeeec
Confidence 66889999999999999999999999974
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=174.41 Aligned_cols=202 Identities=26% Similarity=0.328 Sum_probs=159.4
Q ss_pred EEEeecCceEEeccccc--cccccccCCCCEEEEEECCCC-CeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeE
Q psy9316 26 HLVCKIDDYVKHFNTHN--DIKEYQAHGSKVHSVAWSCDG-RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 102 (264)
Q Consensus 26 ~~~~~~d~~~~~~~~~~--~~~~~~~h~~~V~~l~~s~~g-~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i 102 (264)
+..|-..|.+++|+..+ -++.+.+|+.+|..+.|+|++ ..+++|+.|+.+++||+++. . . ...+.+|++.|.+.
T Consensus 83 laaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-~-v-~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-Y-V-QAELSGHTDYVRCG 159 (487)
T ss_pred EEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc-E-E-EEEecCCcceeEee
Confidence 33344588999998655 678899999999999999955 56667888999999998752 2 2 23467999999999
Q ss_pred EEecCCCCeEEEEeCCCcEEEEECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCCccceEEEec
Q psy9316 103 CWHATNPDLLSTASGDKTVRIWDARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163 (264)
Q Consensus 103 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 163 (264)
+|+|..++++++||.||+|++||+++.... ..+++ ....++++||+-.++.... .+..
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ias-AgGn~vkVWDl~~G~qll~--~~~~ 236 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIAS-AGGNSVKVWDLTTGGQLLT--SMFN 236 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEE-cCCCeEEEEEecCCceehh--hhhc
Confidence 999999999999999999999999986311 12232 2356799999976554332 2345
Q ss_pred cccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce-eEeecCceEEEEEcCCCCEEEEeeCCCeEEEEE
Q psy9316 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-IIATKGENINITWAPNGNTIAVGNKEDLVTFID 234 (264)
Q Consensus 164 h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~-~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d 234 (264)
|...|+++++..+ +..++|++-|+.+++||+.+.+.. -...++++.+++.+|++..+++|-.||.+.+=+
T Consensus 237 H~KtVTcL~l~s~-~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 237 HNKTVTCLRLASD-STRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred ccceEEEEEeecC-CceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeeh
Confidence 9999999999874 467889999999999997776542 234578899999999999999999999988774
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=164.06 Aligned_cols=205 Identities=23% Similarity=0.378 Sum_probs=152.5
Q ss_pred eEeecCCCeeEEEeecCceEEeccccc----cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEE
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTHN----DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~ 91 (264)
..|.|....+...++||+.+|.|+... .-+....|.++|.+++|+.||..+++|+.|+.+++||+..+. ...
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q----~~~ 108 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ----VSQ 108 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC----eee
Confidence 355665555555799999999997643 235677899999999999999999999999999999997642 234
Q ss_pred EecccccEEeEEEecCC-CCeEEEEeCCCcEEEEECCCCCcc----------------eEEEeecCCCcEEEEEe-----
Q psy9316 92 YRGHTGSVDQLCWHATN-PDLLSTASGDKTVRIWDARTQKSQ----------------IMLASGSFDKSVAIFAL----- 149 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~----------------~~~~~~~~d~~i~i~~~----- 149 (264)
...|.++|..+.|.+.. ...|++||.|+++|.||++..... .+++.+..++.|.+|.|
T Consensus 109 v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~t 188 (347)
T KOG0647|consen 109 VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPT 188 (347)
T ss_pred eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcc
Confidence 66899999999997633 247899999999999999875321 12333444444444443
Q ss_pred ---------------------------------------ccCCCccceEEEecccc---------ceeeEEEcCCCCCEE
Q psy9316 150 ---------------------------------------DKKGDLNKEVVYRGHTG---------SVDQLCWHATNPDLL 181 (264)
Q Consensus 150 ---------------------------------------~~~~~~~~~~~~~~h~~---------~i~~i~~~~~~~~~i 181 (264)
+.... ...++|++|.. .|+.|+|+|.. ..|
T Consensus 189 e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtl 266 (347)
T KOG0647|consen 189 EFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTL 266 (347)
T ss_pred hhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeeccc-ceE
Confidence 32211 23457788873 47789999964 578
Q ss_pred EEEeCCCcEEEEeCCCCccee--EeecCceEEEEEcCCCCEEEEeeC
Q psy9316 182 STASGDKTVRIWDARTQKSQI--IATKGENINITWAPNGNTIAVGNK 226 (264)
Q Consensus 182 ~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~ 226 (264)
+|+++||++.+||...+.... ..+++.+.+.+|+.+|.++|.+..
T Consensus 267 vTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 267 VTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred EEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 899999999999988766422 345678899999999999988763
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-24 Score=178.13 Aligned_cols=192 Identities=22% Similarity=0.371 Sum_probs=152.1
Q ss_pred CCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC
Q psy9316 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 129 (264)
Q Consensus 50 h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~ 129 (264)
....|.|++++ ...+++|..|.+|++||.+.. ....++.+|++.|.|+.|. .+.+++||.|.+|++||.+++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~---~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSL---ECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccH---HHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCC
Confidence 34579999984 678899999999999987542 2223467999999999984 468999999999999999997
Q ss_pred Ccc-----------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEE
Q psy9316 130 KSQ-----------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 192 (264)
Q Consensus 130 ~~~-----------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~i 192 (264)
+.. .++++.+.|.+|++|++.....+.....+.+|.+.|+.+.|+ ..+|+|++.|.+|++
T Consensus 268 e~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKV 344 (499)
T ss_pred chhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEE
Confidence 632 267899999999999997655444333467999999999985 359999999999999
Q ss_pred EeCCCCccee--EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 193 WDARTQKSQI--IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 193 wD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
|++.+.+... ..+...+.++- -.|+.+++||.|.+|++||...+.+.+ -+.||+.-+|++
T Consensus 345 W~~st~efvRtl~gHkRGIAClQ--Yr~rlvVSGSSDntIRlwdi~~G~cLR----vLeGHEeLvRci 406 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGACLR----VLEGHEELVRCI 406 (499)
T ss_pred Eeccceeeehhhhcccccceehh--ccCeEEEecCCCceEEEEeccccHHHH----HHhchHHhhhhe
Confidence 9999988532 23344443333 469999999999999999988776653 467888888876
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-23 Score=170.13 Aligned_cols=208 Identities=24% Similarity=0.336 Sum_probs=167.7
Q ss_pred CeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEE
Q psy9316 23 SQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 100 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~ 100 (264)
+++.++++.|+++++|+. +.+.-++.+|...|..+++++...|+++++.|+.|+-||++.++.+. -|.+|-+.|.
T Consensus 163 n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~ 239 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVY 239 (460)
T ss_pred ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeE
Confidence 455677888999999976 44556788999999999999999999999999999999998755433 3779999999
Q ss_pred eEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEeccCCCccceEEE
Q psy9316 101 QLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVY 161 (264)
Q Consensus 101 ~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~ 161 (264)
+++.+|.. +.+++|++|.++++||+++... ...+++|+.|++|.+||+..+.. ..++
T Consensus 240 ~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt---~~tl 315 (460)
T KOG0285|consen 240 CLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT---MITL 315 (460)
T ss_pred EEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce---eEee
Confidence 99999966 6888999999999999998532 12578999999999999986543 2356
Q ss_pred eccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 162 ~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
..|...|.+++.+|. ...|||++.| .|+-|++..++. .+..+...++.++... ..++++|+.+|.+.+||.+.+.
T Consensus 316 t~hkksvral~lhP~-e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ns-D~v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 316 THHKKSVRALCLHPK-ENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNS-DGVLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred ecccceeeEEecCCc-hhhhhccCCc-cceeccCCccchhhccccccceeeeeeecc-CceEEEcCCceEEEEEecCcCc
Confidence 778899999999984 4678888776 789999988764 2233445566777664 5577799999999999988654
Q ss_pred C
Q psy9316 240 P 240 (264)
Q Consensus 240 ~ 240 (264)
.
T Consensus 393 n 393 (460)
T KOG0285|consen 393 N 393 (460)
T ss_pred c
Confidence 4
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=164.65 Aligned_cols=192 Identities=41% Similarity=0.708 Sum_probs=151.7
Q ss_pred cccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEE
Q psy9316 45 KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124 (264)
Q Consensus 45 ~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vw 124 (264)
+.+++|...|.+++|+.+|.+|++|+.|+++.+|+++.. .......+++|.+.|-.++|+|..+.++++++.|++|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 678899999999999999999999999999999998754 3333445789999999999999999999999999999999
Q ss_pred ECCCCCcce------------------EEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeC
Q psy9316 125 DARTQKSQI------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG 186 (264)
Q Consensus 125 d~~~~~~~~------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~ 186 (264)
|++..+... .++.++.|..|.+.|.+....... ......++.++|+ .+.++|....+
T Consensus 93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~----~~~~~e~ne~~w~-~~nd~Fflt~G 167 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE----EQFKFEVNEISWN-NSNDLFFLTNG 167 (313)
T ss_pred EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh----hcccceeeeeeec-CCCCEEEEecC
Confidence 999876422 355666666677776654332211 1233467889998 44566666677
Q ss_pred CCcEEEEeCCCCcc--eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 187 DKTVRIWDARTQKS--QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 187 dg~i~iwD~~t~~~--~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
-|.|.|....+-+. .+.+++....+|.|+|+|+|+|+|++|..+.+||+.+..+.+
T Consensus 168 lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICER 225 (313)
T ss_pred CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhe
Confidence 89999987776543 445677778899999999999999999999999998765544
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=188.60 Aligned_cols=164 Identities=22% Similarity=0.397 Sum_probs=135.1
Q ss_pred cccc-cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccC----------------------------CC------C---
Q psy9316 45 KEYQ-AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK----------------------------GD------L--- 86 (264)
Q Consensus 45 ~~~~-~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~----------------------------~~------~--- 86 (264)
..++ +|++.|+++.|++||+|||+||.|+.|+||.+... .. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3456 89999999999999999999999999999987650 00 0
Q ss_pred --------------------cccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEE
Q psy9316 87 --------------------NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAI 146 (264)
Q Consensus 87 --------------------~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i 146 (264)
.....+.+|.+.|.++.|+. .++|+++|.|++||||++....+..
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~------------- 404 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLK------------- 404 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceee-------------
Confidence 00112568999999999985 3688999999999999997654332
Q ss_pred EEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-EeecCceEEEEEcCCCCEEEEee
Q psy9316 147 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATKGENINITWAPNGNTIAVGN 225 (264)
Q Consensus 147 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~~~~~~v~~sp~g~~la~gs 225 (264)
...|.+-|++++|+|.+..+|+||+-||.++||++...+... .....-+++++|+|||++.++|+
T Consensus 405 --------------~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt 470 (712)
T KOG0283|consen 405 --------------VFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGT 470 (712)
T ss_pred --------------EEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEE
Confidence 235889999999999999999999999999999999876432 22345688999999999999999
Q ss_pred CCCeEEEEEccc
Q psy9316 226 KEDLVTFIDVVK 237 (264)
Q Consensus 226 ~d~~i~~~d~~~ 237 (264)
-+|.+++|++..
T Consensus 471 ~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 471 FNGYCRFYDTEG 482 (712)
T ss_pred eccEEEEEEccC
Confidence 999999999774
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=183.71 Aligned_cols=215 Identities=20% Similarity=0.352 Sum_probs=174.2
Q ss_pred EeecCCCeeEEEeecCceEEec--cccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHF--NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG 94 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~ 94 (264)
.|.|+-.+ .+++-..|.|+.| +++.++.+|..|.++|..+.|+|.+.++++||.|-.|+||++.... ...++.+
T Consensus 16 sFHP~rPw-ILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr---clftL~G 91 (1202)
T KOG0292|consen 16 SFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR---CLFTLLG 91 (1202)
T ss_pred ecCCCCCE-EEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce---ehhhhcc
Confidence 56687765 4566678888775 6889999999999999999999999999999999999999987532 3355779
Q ss_pred ccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-------------------eEEEeecCCCcEEEEEecc---C
Q psy9316 95 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-------------------IMLASGSFDKSVAIFALDK---K 152 (264)
Q Consensus 95 h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~---~ 152 (264)
|-+-|..+.||+.- -+++|+|.|-+|++|+-.++++. -++++++.|.+|++||++- +
T Consensus 92 HlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk 170 (1202)
T KOG0292|consen 92 HLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKK 170 (1202)
T ss_pred ccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhcc
Confidence 99999999999755 58999999999999999886542 2578999999999999741 1
Q ss_pred ----C-------------------CccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee----Eee
Q psy9316 153 ----G-------------------DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI----IAT 205 (264)
Q Consensus 153 ----~-------------------~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~----~~~ 205 (264)
+ +..-...+.+|..+|+-++|+|.- -+|+||+.|..|++|-+...+.-. ..+
T Consensus 171 ~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWEvDtcrgH 249 (1202)
T KOG0292|consen 171 NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTCRGH 249 (1202)
T ss_pred CCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEeccccceeehhhhcc
Confidence 1 001123457899999999999864 589999999999999987655322 223
Q ss_pred cCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 206 KGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 206 ~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
...+.++-|+|..+.+++.+.|+.|++||..+
T Consensus 250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred cCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 45577888999999999999999999999764
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=177.43 Aligned_cols=167 Identities=23% Similarity=0.353 Sum_probs=132.7
Q ss_pred ccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCC----cccEEEecccccEEeEEEecCCCCeEEEEeCCCc
Q psy9316 46 EYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDL----NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 120 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~ 120 (264)
.+.+|.+.|.+++|+| ++++|++|+.|++|++|++...+.. .....+.+|...|.+++|+|.+.++|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999998653211 1234577899999999999977789999999999
Q ss_pred EEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc
Q psy9316 121 VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200 (264)
Q Consensus 121 i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~ 200 (264)
|++||+++++.. ..+.+|...|.+++|+|+ +.+|++++.||.|++||+++++.
T Consensus 150 VrIWDl~tg~~~--------------------------~~l~~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 150 VNVWDVERGKAV--------------------------EVIKCHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred EEEEECCCCeEE--------------------------EEEcCCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcE
Confidence 999999865321 124568889999999985 57899999999999999998775
Q ss_pred eeE--eecC-ceEEEEEcCCCCEEEEee----CCCeEEEEEcccCC
Q psy9316 201 QII--ATKG-ENINITWAPNGNTIAVGN----KEDLVTFIDVVKSL 239 (264)
Q Consensus 201 ~~~--~~~~-~~~~v~~sp~g~~la~gs----~d~~i~~~d~~~~~ 239 (264)
... .+.+ ....+.|.|++..+++++ .|+.|++||+++..
T Consensus 203 v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 322 2222 234678999888776543 57999999998643
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=169.56 Aligned_cols=223 Identities=21% Similarity=0.473 Sum_probs=168.7
Q ss_pred EeecCCCeeEEEeecCceEEeccc--ccc----------ccccccCCCCEEEEEECCC-CCeEEEEECCCcEEEEEeccC
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--HND----------IKEYQAHGSKVHSVAWSCD-GRRLASGSFDKSVAIFALDKK 83 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~----------~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~v~~~~~~ 83 (264)
++.|-...+..+..-.+.+.+|+. ... -.++.+|+..-..|+|++. .-.|++|+.|++|.+||++..
T Consensus 131 RymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~ 210 (422)
T KOG0264|consen 131 RYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAE 210 (422)
T ss_pred hhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEecccc
Confidence 445555544334445555555532 111 1167799887788999984 458889999999999999865
Q ss_pred CC----CcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC--Cc--------------------ceEEEe
Q psy9316 84 GD----LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ--KS--------------------QIMLAS 137 (264)
Q Consensus 84 ~~----~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~--------------------~~~~~~ 137 (264)
+. ......+.+|.+.|.+++|++....+|.+++.|+.+.+||+|+. +. ..++++
T Consensus 211 ~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT 290 (422)
T KOG0264|consen 211 SKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILAT 290 (422)
T ss_pred ccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEe
Confidence 44 23345688999999999999999999999999999999999952 21 126899
Q ss_pred ecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc------------ce-eEe
Q psy9316 138 GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK------------SQ-IIA 204 (264)
Q Consensus 138 ~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~------------~~-~~~ 204 (264)
|+.|+++.+||++.-.. +..++.+|...|..+.|+|....++||++.|+.+.+||+..-. .. +..
T Consensus 291 ~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~ 368 (422)
T KOG0264|consen 291 GSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFI 368 (422)
T ss_pred ccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEE
Confidence 99999999999975332 4457889999999999999999999999999999999996321 11 122
Q ss_pred e---cCceEEEEEcCCCCEE-EEeeCCCeEEEEEcccCCCC
Q psy9316 205 T---KGENINITWAPNGNTI-AVGNKEDLVTFIDVVKSLPP 241 (264)
Q Consensus 205 ~---~~~~~~v~~sp~g~~l-a~gs~d~~i~~~d~~~~~~~ 241 (264)
+ ...+..++|+|+..++ ++++.|+.+.||+.......
T Consensus 369 HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i~~ 409 (422)
T KOG0264|consen 369 HGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENIYN 409 (422)
T ss_pred ecCcccccccccCCCCCCeEEEEecCCceEEEeeccccccC
Confidence 2 2346778999998755 88899999999998754443
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=161.18 Aligned_cols=196 Identities=24% Similarity=0.427 Sum_probs=160.8
Q ss_pred ccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEE-ecCCCCeEEEEeCCCcEEEEEC
Q psy9316 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW-HATNPDLLSTASGDKTVRIWDA 126 (264)
Q Consensus 48 ~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~-~~~~~~~l~s~s~dg~i~vwd~ 126 (264)
..|++-|+++..+--|++|++++.|++|+||.+..++.......+.+|.++|..+.| +|.-+.+|+|++.||.|.+|.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 478888998888889999999999999999999877665556678899999999999 6777789999999999999987
Q ss_pred CCCC-----------------------cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCC-----
Q psy9316 127 RTQK-----------------------SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP----- 178 (264)
Q Consensus 127 ~~~~-----------------------~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~----- 178 (264)
.++. ...+++.++.||.|.+.+.+.++.........+|.-+|++++|.|...
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 6642 123688999999999999887755444456678999999999999621
Q ss_pred --------CEEEEEeCCCcEEEEeCCCCc----ceeEeecCceEEEEEcCCC----CEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 179 --------DLLSTASGDKTVRIWDARTQK----SQIIATKGENINITWAPNG----NTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 179 --------~~i~s~~~dg~i~iwD~~t~~----~~~~~~~~~~~~v~~sp~g----~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
..|+||+.|+.|+||+..+.+ ..+..+.+-+..++|.|.- .+||++|.||.+.||..++...+.
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 358999999999999998854 2244556668889999954 689999999999999987655544
Q ss_pred C
Q psy9316 243 E 243 (264)
Q Consensus 243 ~ 243 (264)
+
T Consensus 248 k 248 (299)
T KOG1332|consen 248 K 248 (299)
T ss_pred c
Confidence 3
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=171.68 Aligned_cols=188 Identities=20% Similarity=0.378 Sum_probs=153.7
Q ss_pred cCCCCEEEEEECCCC-CeEEEEECCCcEEEEEeccCCCCcc-------cEEEecccccEEeEEEecCCCCeEEEEeCCCc
Q psy9316 49 AHGSKVHSVAWSCDG-RRLASGSFDKSVAIFALDKKGDLNK-------EVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 120 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g-~~l~s~s~dg~i~v~~~~~~~~~~~-------~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~ 120 (264)
.|.+.|+.+++-|+. ..|++++..+.+.|||..+...... ...+.+|...-.+++|++...-.+++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 688999999999955 5677788899999999876443222 23678999988999999988889999999999
Q ss_pred EEEEECCCCCc---------------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEE
Q psy9316 121 VRIWDARTQKS---------------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173 (264)
Q Consensus 121 i~vwd~~~~~~---------------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~ 173 (264)
|++||++.... ..++++.+.|+.+.|||.+.+ .........+|.+.|++++|
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEe
Confidence 99999976432 114788999999999999863 22223345789999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCcce---eEeecCceEEEEEcCCC-CEEEEeeCCCeEEEEEccc
Q psy9316 174 HATNPDLLSTASGDKTVRIWDARTQKSQ---IIATKGENINITWAPNG-NTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 174 ~~~~~~~i~s~~~dg~i~iwD~~t~~~~---~~~~~~~~~~v~~sp~g-~~la~gs~d~~i~~~d~~~ 237 (264)
+|.+..+||||+.|++|++||+|+-... +..+...+..|.|||+. ..||+++.|+.+.+||+..
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 9999999999999999999999986643 33456779999999966 5779999999999999875
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=162.85 Aligned_cols=192 Identities=23% Similarity=0.443 Sum_probs=154.7
Q ss_pred cccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCccc-------E-----EEecccccEEeEEEecCCCCeEE
Q psy9316 47 YQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNKE-------V-----VYRGHTGSVDQLCWHATNPDLLS 113 (264)
Q Consensus 47 ~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~~-------~-----~~~~h~~~v~~i~~~~~~~~~l~ 113 (264)
...|.+.|+.|+..+ .|+++++|+.||.|.+||++.....+.. . --.+|...|..+.|.|.+.-.+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 357999999999998 8999999999999999998753211110 0 02367888999999999988999
Q ss_pred EEeCCCcEEEEECCCCCc---------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEE
Q psy9316 114 TASGDKTVRIWDARTQKS---------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 172 (264)
Q Consensus 114 s~s~dg~i~vwd~~~~~~---------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~ 172 (264)
++|-|.++++||.++.+. .+++++|..|-.|++.|+..+... .++.+|.+.|.++.
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s---H~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS---HTLSGHRDGVLAVE 195 (397)
T ss_pred cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce---eeeccccCceEEEE
Confidence 999999999999988543 236788888999999999765432 35789999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCCCc-------------c-ee---EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q psy9316 173 WHATNPDLLSTASGDKTVRIWDARTQK-------------S-QI---IATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 173 ~~~~~~~~i~s~~~dg~i~iwD~~t~~-------------~-~~---~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~ 235 (264)
|+|....++++|+.||.|++||++--. . .. ..+.+.++.++|+.+|.++++++.|+.+++|+-
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 999888889999999999999997431 1 11 123355778999999999999999999999997
Q ss_pred ccCCCC
Q psy9316 236 VKSLPP 241 (264)
Q Consensus 236 ~~~~~~ 241 (264)
.++...
T Consensus 276 ~~G~nt 281 (397)
T KOG4283|consen 276 ESGRNT 281 (397)
T ss_pred ccCccc
Confidence 765543
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=158.31 Aligned_cols=187 Identities=21% Similarity=0.297 Sum_probs=153.4
Q ss_pred cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEE
Q psy9316 43 DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122 (264)
Q Consensus 43 ~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~ 122 (264)
..+.+..|+++|.++.|+-||++.++++.|.+|++|+... + .....+.+|...|.+++.+.++ ..+++|+.|..+.
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-g--~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~ 84 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-G--ALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQ 84 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccc-c--ceeeeecCCCceeeeccccccc-cccccCCCCceEE
Confidence 4566778999999999999999999999999999998643 3 2345688999999999887644 6788999999999
Q ss_pred EEECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEE
Q psy9316 123 IWDARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST 183 (264)
Q Consensus 123 vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s 183 (264)
+||+++++.. ..+++|+.|.++++||.+.+... +...+....+.|.+|..+ ...|++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e-PiQildea~D~V~Si~v~---~heIva 160 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE-PIQILDEAKDGVSSIDVA---EHEIVA 160 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC-ccchhhhhcCceeEEEec---ccEEEe
Confidence 9999987632 25789999999999999876532 333455556788888875 357889
Q ss_pred EeCCCcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 184 ASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 184 ~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
|+.||+++.||++.+.....-...++++++|+++|+..++++-|+++++.|-.+
T Consensus 161 GS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 161 GSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKET 214 (307)
T ss_pred eccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccch
Confidence 999999999999988754333456789999999999999999999999999654
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-23 Score=164.10 Aligned_cols=200 Identities=22% Similarity=0.355 Sum_probs=154.2
Q ss_pred CceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCC
Q psy9316 32 DDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109 (264)
Q Consensus 32 d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~ 109 (264)
|=..|+|+. +..++.| .|+.-|.+++|+.|.++|++|++++.++||+++.+....+ -+.+|.+.|..+-|...+
T Consensus 80 dftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~--E~~ghtg~Ir~v~wc~eD- 155 (334)
T KOG0278|consen 80 DFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK--EISGHTGGIRTVLWCHED- 155 (334)
T ss_pred cchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch--hhcCCCCcceeEEEeccC-
Confidence 334466654 3456666 6888999999999999999999999999999987654433 367999999999998755
Q ss_pred CeEEEEeCCCcEEEEECCCCCcce-----------------EEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEE
Q psy9316 110 DLLSTASGDKTVRIWDARTQKSQI-----------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 172 (264)
Q Consensus 110 ~~l~s~s~dg~i~vwd~~~~~~~~-----------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~ 172 (264)
+.++|++.|++||+||.++++... -+++-.+.++|.+|+...-+.+ .. ..-.-.|.+.+
T Consensus 156 ~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~l---Ks-~k~P~nV~SAS 231 (334)
T KOG0278|consen 156 KCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLL---KS-YKMPCNVESAS 231 (334)
T ss_pred ceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccce---ee-ccCcccccccc
Confidence 556677999999999999876432 1345556778889986542211 11 11233577888
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCCCccee---EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 173 WHATNPDLLSTASGDKTVRIWDARTQKSQI---IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 173 ~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~---~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
++|.. .++++|++|+.++.||..+++... ..+.+.+.++.|+|+|...|+||.||+|++|.+..+..
T Consensus 232 L~P~k-~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 232 LHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccCCC-ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 88865 788899999999999999987532 34567899999999999999999999999999775444
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-22 Score=176.80 Aligned_cols=210 Identities=22% Similarity=0.313 Sum_probs=170.7
Q ss_pred CeeEEEeecCceEEeccccc------cccccccCCCCEEEEEECCC-CCeEEEEECCCcEEEEEeccCCCCcccEE----
Q psy9316 23 SQFHLVCKIDDYVKHFNTHN------DIKEYQAHGSKVHSVAWSCD-GRRLASGSFDKSVAIFALDKKGDLNKEVV---- 91 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~~~------~~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~v~~~~~~~~~~~~~~---- 91 (264)
+.++++|+-|+.+++|+..+ .+....+|.+.|.+++++.. ..+++++|.|.++++|++...........
T Consensus 377 g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~ 456 (775)
T KOG0319|consen 377 GDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCR 456 (775)
T ss_pred CcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhh
Confidence 35778899999999996632 34566899999999999764 47899999999999999875222211122
Q ss_pred --EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC-------------------cceEEEeecCCCcEEEEEec
Q psy9316 92 --YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFALD 150 (264)
Q Consensus 92 --~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~-------------------~~~~~~~~~~d~~i~i~~~~ 150 (264)
...|...|.+++..|.+ .++++||.|++.++|+++... ....+++++.|++|+||.++
T Consensus 457 ~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 457 YTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred HHHHhhcccccceEecCCC-ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence 24799999999999955 799999999999999998532 12268999999999999997
Q ss_pred cCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEEEEcCCCCEEEEeeCCC
Q psy9316 151 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENINITWAPNGNTIAVGNKED 228 (264)
Q Consensus 151 ~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~~sp~g~~la~gs~d~ 228 (264)
.... ..++.+|...|-...|-. ++..|+|++.||-+++||+++.++ ....+.+.+.+++-+|++..+++|+.|+
T Consensus 536 ~fSC---lkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg 611 (775)
T KOG0319|consen 536 TFSC---LKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDG 611 (775)
T ss_pred ccee---eeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCe
Confidence 6443 357899999999998875 557888999999999999999986 3456788899999999999999999999
Q ss_pred eEEEEEccc
Q psy9316 229 LVTFIDVVK 237 (264)
Q Consensus 229 ~i~~~d~~~ 237 (264)
.+.+|.-.+
T Consensus 612 ~i~~wkD~T 620 (775)
T KOG0319|consen 612 RIIFWKDVT 620 (775)
T ss_pred EEEEeecCc
Confidence 999997543
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=170.29 Aligned_cols=212 Identities=21% Similarity=0.346 Sum_probs=150.1
Q ss_pred CCCceEeecCCCeeEEEeecCceEEeccc-----cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCC
Q psy9316 12 KSPEYKLLPSGSQFHLVCKIDDYVKHFNT-----HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDL 86 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~ 86 (264)
||+|++++|+++. |.+.-+|.. .+..+++.+|..+|..+.|+||.++|++++.|..+.+||+.+.. .
T Consensus 232 FS~nGkyLAsaSk-------D~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd-~ 303 (519)
T KOG0293|consen 232 FSHNGKYLASASK-------DSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD-L 303 (519)
T ss_pred EcCCCeeEeeccC-------CceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch-h
Confidence 6788888887765 444444432 23467889999999999999999999999999999999987632 2
Q ss_pred cccEEE-ecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-------------------e-------------
Q psy9316 87 NKEVVY-RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-------------------I------------- 133 (264)
Q Consensus 87 ~~~~~~-~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------------~------------- 133 (264)
.. .+ .+|...+.+++|.|++ ..+++|+.|+.+..||++..... .
T Consensus 304 ~~--~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l 380 (519)
T KOG0293|consen 304 RH--LYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRL 380 (519)
T ss_pred hh--hcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceee
Confidence 21 12 2456789999999966 56789999999999998753210 0
Q ss_pred ----------------------------EEEeecCCCcEEEEEeccCCCccceEEEeccccc--eeeEEEcCCCCCEEEE
Q psy9316 134 ----------------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS--VDQLCWHATNPDLLST 183 (264)
Q Consensus 134 ----------------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~--i~~i~~~~~~~~~i~s 183 (264)
++...-.+..+.+||+..+.-.. .+.+|... +-.-||.-.+..+++|
T Consensus 381 ~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~---kY~Ghkq~~fiIrSCFgg~~~~fiaS 457 (519)
T KOG0293|consen 381 YNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVR---KYFGHKQGHFIIRSCFGGGNDKFIAS 457 (519)
T ss_pred echhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHH---HhhcccccceEEEeccCCCCcceEEe
Confidence 11222233445566654222111 23566654 3344666556679999
Q ss_pred EeCCCcEEEEeCCCCcceeE--eecCceEEEEEcCCCC-EEEEeeCCCeEEEEEccc
Q psy9316 184 ASGDKTVRIWDARTQKSQII--ATKGENINITWAPNGN-TIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 184 ~~~dg~i~iwD~~t~~~~~~--~~~~~~~~v~~sp~g~-~la~gs~d~~i~~~d~~~ 237 (264)
|++|+.|+||+..++..... .+...+++|+|+|... .+|+|+.||+|++|...+
T Consensus 458 GSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 458 GSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999999999999875333 2345688999999775 669999999999998653
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=156.91 Aligned_cols=211 Identities=27% Similarity=0.467 Sum_probs=163.9
Q ss_pred ceEeecCCCeeEEEeecCceEEeccccc--cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEE
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTHN--DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY 92 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~ 92 (264)
...+.|.+ ...++++.++.+++|+... .+..+..|...|.++.|+++++++++++.|+.+.+|++... .....+
T Consensus 56 ~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~ 131 (289)
T cd00200 56 DVAASADG-TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG---KCLTTL 131 (289)
T ss_pred EEEECCCC-CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc---EEEEEe
Confidence 34555655 3556788899999997754 67778899999999999999999998888999999998632 222345
Q ss_pred ecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEeccCC
Q psy9316 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFALDKKG 153 (264)
Q Consensus 93 ~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~ 153 (264)
..|...+.+++|+|. ..++++++.|+.+++||++..+. ...+++++.++.+.+|+++...
T Consensus 132 ~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 132 RGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred ccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 578889999999986 46777777799999999975431 1146667779999999986532
Q ss_pred CccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--EeecCceEEEEEcCCCCEEEEeeCCCeEE
Q psy9316 154 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IATKGENINITWAPNGNTIAVGNKEDLVT 231 (264)
Q Consensus 154 ~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i~ 231 (264)
.. ..+..|...+..+.|+|+ +.++++++.||.+++||+.+..... ..+...+.+++|+|++++|++++.|+.++
T Consensus 211 ~~---~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 211 CL---GTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred ee---cchhhcCCceEEEEEcCC-CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence 21 234467789999999986 6788887779999999999765422 23345688999999999999999999999
Q ss_pred EEE
Q psy9316 232 FID 234 (264)
Q Consensus 232 ~~d 234 (264)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-22 Score=178.97 Aligned_cols=212 Identities=24% Similarity=0.360 Sum_probs=168.1
Q ss_pred EeecCCCeeEEEeecCceEEecc--ccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFN--THNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG 94 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~ 94 (264)
.|.|... +..+++-|-.||.|+ .+.++-++.+|-+.|..+.|++.-.+|+++|.|.+|+||+.... ....++.+
T Consensus 58 ~FH~~qp-lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr---~~iavltG 133 (1202)
T KOG0292|consen 58 DFHPTQP-LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR---KCIAVLTG 133 (1202)
T ss_pred eecCCCC-eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC---ceEEEEec
Confidence 3446553 455666677788875 56778888999999999999999999999999999999998653 23456889
Q ss_pred ccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC--------------------------------------------
Q psy9316 95 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-------------------------------------------- 130 (264)
Q Consensus 95 h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~-------------------------------------------- 130 (264)
|+.-|.|..|+|.. ++++|+|-|-+||+||+...+
T Consensus 134 HnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa 212 (1202)
T KOG0292|consen 134 HNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA 212 (1202)
T ss_pred CceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence 99999999999955 689999999999999985311
Q ss_pred ----cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE--e
Q psy9316 131 ----SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII--A 204 (264)
Q Consensus 131 ----~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~--~ 204 (264)
...++++|+.|..+++|.++....+ ...++++|...|.++.|+|. .++|+|.++|++|+|||+........ .
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaW-EvDtcrgH~nnVssvlfhp~-q~lIlSnsEDksirVwDm~kRt~v~tfrr 290 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAW-EVDTCRGHYNNVSSVLFHPH-QDLILSNSEDKSIRVWDMTKRTSVQTFRR 290 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccce-eehhhhcccCCcceEEecCc-cceeEecCCCccEEEEecccccceeeeec
Confidence 0125799999999999999865544 33467999999999999984 57999999999999999987764322 2
Q ss_pred ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 205 TKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 205 ~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
..++-+.++-.|..+.+|+|-.+|+ -+|.+.
T Consensus 291 endRFW~laahP~lNLfAAgHDsGm-~VFkle 321 (1202)
T KOG0292|consen 291 ENDRFWILAAHPELNLFAAGHDSGM-IVFKLE 321 (1202)
T ss_pred cCCeEEEEEecCCcceeeeecCCce-EEEEEc
Confidence 4556677888898998888886665 455554
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=156.55 Aligned_cols=228 Identities=26% Similarity=0.421 Sum_probs=170.5
Q ss_pred EeecCCCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG 94 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~ 94 (264)
.+.|.+ .+.+++..++.++.|+.. .....+..|...+..+.|+|++++|++++.||.|.+|++.... ....+..
T Consensus 16 ~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~---~~~~~~~ 91 (289)
T cd00200 16 AFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE---CVRTLTG 91 (289)
T ss_pred EEcCCC-CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc---ceEEEec
Confidence 555655 455677789999998764 3456778899999999999999999999999999999987532 2234668
Q ss_pred ccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEeccCCCc
Q psy9316 95 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFALDKKGDL 155 (264)
Q Consensus 95 h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~~~ 155 (264)
|...+.++.|++. ..++++++.||.+++||+++.+. ...+++++.++.+.+|+++....
T Consensus 92 ~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~- 169 (289)
T cd00200 92 HTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC- 169 (289)
T ss_pred cCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc-
Confidence 8889999999986 46777777799999999974321 12455666699999999864332
Q ss_pred cceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE--eecCceEEEEEcCCCCEEEEeeCCCeEEEE
Q psy9316 156 NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII--ATKGENINITWAPNGNTIAVGNKEDLVTFI 233 (264)
Q Consensus 156 ~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~--~~~~~~~~v~~sp~g~~la~gs~d~~i~~~ 233 (264)
...+..|...+.++.|+|++ ..+++++.||.+++||+++.+.... .+...+.++.|+|++.++++++.|+.+++|
T Consensus 170 --~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~ 246 (289)
T cd00200 170 --VATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246 (289)
T ss_pred --ceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEE
Confidence 22345777899999999865 4666777899999999997654222 345578899999999999999889999999
Q ss_pred EcccCCCCCCCcccCcccceeeee
Q psy9316 234 DVVKSLPPRERTLTSRGHLMETRS 257 (264)
Q Consensus 234 d~~~~~~~~~~~~~~~~h~~~~~~ 257 (264)
|+..+... ....+|...+.+
T Consensus 247 ~~~~~~~~----~~~~~~~~~i~~ 266 (289)
T cd00200 247 DLRTGECV----QTLSGHTNSVTS 266 (289)
T ss_pred EcCCceeE----EEccccCCcEEE
Confidence 98753322 223355544444
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=154.55 Aligned_cols=219 Identities=16% Similarity=0.286 Sum_probs=166.1
Q ss_pred EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEEC--CCcEEEEEeccCCCCcccEEE
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSF--DKSVAIFALDKKGDLNKEVVY 92 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~--dg~i~v~~~~~~~~~~~~~~~ 92 (264)
.+...| ...++|+.|+.+++|+. ++..++...++-.|..++|......++.++. |.+|++.++..+..+ ..+
T Consensus 21 ~fs~~G-~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl---RYF 96 (311)
T KOG1446|consen 21 DFSDDG-LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL---RYF 96 (311)
T ss_pred EecCCC-CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE---EEc
Confidence 344455 45667899999999865 5677888888888999999887777777776 889999999865433 458
Q ss_pred ecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-----------------eEEEeecCCCcEEEEEeccC--C
Q psy9316 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-----------------IMLASGSFDKSVAIFALDKK--G 153 (264)
Q Consensus 93 ~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------------~~~~~~~~d~~i~i~~~~~~--~ 153 (264)
.+|...|..++.+|.+ +.++|++.|++|++||++..+++ .++|++.....|++||++.- +
T Consensus 97 ~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkg 175 (311)
T KOG1446|consen 97 PGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKG 175 (311)
T ss_pred CCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCC
Confidence 8999999999999977 67889999999999999975543 25677777779999999863 2
Q ss_pred CccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--EeecC---ceEEEEEcCCCCEEEEeeCCC
Q psy9316 154 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IATKG---ENINITWAPNGNTIAVGNKED 228 (264)
Q Consensus 154 ~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~---~~~~v~~sp~g~~la~gs~d~ 228 (264)
..........-...++.+.|+|++..++ .+...+.+++.|.-++.... ..++. ...+..|+||++++.+|+.||
T Consensus 176 PF~tf~i~~~~~~ew~~l~FS~dGK~iL-lsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg 254 (311)
T KOG1446|consen 176 PFTTFSITDNDEAEWTDLEFSPDGKSIL-LSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDG 254 (311)
T ss_pred CceeEccCCCCccceeeeEEcCCCCEEE-EEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCC
Confidence 2222111113356789999998765444 55789999999999887422 22222 235788999999999999999
Q ss_pred eEEEEEcccCCCC
Q psy9316 229 LVTFIDVVKSLPP 241 (264)
Q Consensus 229 ~i~~~d~~~~~~~ 241 (264)
.|.+|+++.+...
T Consensus 255 ~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 255 TIHVWNLETGKKV 267 (311)
T ss_pred cEEEEEcCCCcEe
Confidence 9999999765443
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-21 Score=166.35 Aligned_cols=222 Identities=20% Similarity=0.356 Sum_probs=163.7
Q ss_pred eEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEE
Q psy9316 34 YVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 113 (264)
Q Consensus 34 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~ 113 (264)
+++..+.......|.+|..+++-..|+|.|-|+++|...|+|+||+.......-+ -.++.-.++|.+++|++++.++++
T Consensus 42 ~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLK-nef~v~aG~I~Di~Wd~ds~RI~a 120 (603)
T KOG0318|consen 42 IIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILK-NEFQVLAGPIKDISWDFDSKRIAA 120 (603)
T ss_pred EEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeee-eeeeecccccccceeCCCCcEEEE
Confidence 3455566667788999999999999999999999999999999999765332211 124456789999999998766666
Q ss_pred EEeCC---CcEEEEECCCCC------------------cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEE
Q psy9316 114 TASGD---KTVRIWDARTQK------------------SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 172 (264)
Q Consensus 114 s~s~d---g~i~vwd~~~~~------------------~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~ 172 (264)
+|-.. |.+.+||.-+.- -+--+++++.|+.+.+|.--+ +.=..+++.|..=|+++.
T Consensus 121 vGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP---FKFk~s~r~HskFV~~VR 197 (603)
T KOG0318|consen 121 VGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP---FKFKSSFREHSKFVNCVR 197 (603)
T ss_pred EecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC---eeeeecccccccceeeEE
Confidence 65432 457788864311 012478899999999996321 111224567888899999
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCCCccee--E---eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCccc
Q psy9316 173 WHATNPDLLSTASGDKTVRIWDARTQKSQI--I---ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLT 247 (264)
Q Consensus 173 ~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~---~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~ 247 (264)
|+|+ +.+|+|.+.||.+.+||-.+++..- . .+.+.+.+++|+||++.++++|+|..+++||+......++=.+.
T Consensus 198 ysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 198 YSPD-GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred ECCC-CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecC
Confidence 9996 6789999999999999999988522 2 45678999999999999999999999999999875332221111
Q ss_pred Ccccceeeeeecc
Q psy9316 248 SRGHLMETRSLWG 260 (264)
Q Consensus 248 ~~~h~~~~~~~~~ 260 (264)
-+---.++-+||.
T Consensus 277 ~~v~dqqvG~lWq 289 (603)
T KOG0318|consen 277 STVEDQQVGCLWQ 289 (603)
T ss_pred CchhceEEEEEEe
Confidence 1112467778886
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-22 Score=164.91 Aligned_cols=230 Identities=22% Similarity=0.321 Sum_probs=166.2
Q ss_pred CeeEEEeecCceEEeccc-cccccccccCCCCEEEEEECC---CCCeEEEEECCCcEEEEEeccCCCCcc-cEEEecccc
Q psy9316 23 SQFHLVCKIDDYVKHFNT-HNDIKEYQAHGSKVHSVAWSC---DGRRLASGSFDKSVAIFALDKKGDLNK-EVVYRGHTG 97 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~-~~~~~~~~~h~~~V~~l~~s~---~g~~l~s~s~dg~i~v~~~~~~~~~~~-~~~~~~h~~ 97 (264)
+..+++++.||.+++|+. ++..+.+.+|.++|.+++|-- ....++++|.|.++++|..+....... ....++|..
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~ 194 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKR 194 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccc
Confidence 455678999999999976 678889999999999888753 334699999999999999875433222 223459999
Q ss_pred cEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCC
Q psy9316 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 177 (264)
Q Consensus 98 ~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~ 177 (264)
.|.++...+++ ..+++||.|.++++|+..+.....+ ...+.-..-.--.....+.-.+..++.+|..+|.++.|.+
T Consensus 195 ~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~-E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-- 270 (423)
T KOG0313|consen 195 SVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDEL-ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-- 270 (423)
T ss_pred ceeEEEecCCC-CeEEeecccceeeecccCCCccccc-cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--
Confidence 99999988755 6888999999999999543322111 0000000000000000111223456789999999999986
Q ss_pred CCEEEEEeCCCcEEEEeCCCCccee-EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeee
Q psy9316 178 PDLLSTASGDKTVRIWDARTQKSQI-IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETR 256 (264)
Q Consensus 178 ~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~ 256 (264)
...+.|++.|-+|+.||++++.... .......++++++|..+.|++|+.|..+++||++++.. .....++.||..=|-
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g-s~v~~s~~gH~nwVs 349 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG-SVVSQSLIGHKNWVS 349 (423)
T ss_pred CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCC-ceeEEeeecchhhhh
Confidence 5688899999999999999988643 44456678999999999999999999999999998633 344457778876443
Q ss_pred e
Q psy9316 257 S 257 (264)
Q Consensus 257 ~ 257 (264)
+
T Consensus 350 s 350 (423)
T KOG0313|consen 350 S 350 (423)
T ss_pred h
Confidence 3
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=163.66 Aligned_cols=197 Identities=24% Similarity=0.367 Sum_probs=156.1
Q ss_pred cccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEecc------CCCC---------cccEEEecccccEEeEEEecCCC
Q psy9316 45 KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDK------KGDL---------NKEVVYRGHTGSVDQLCWHATNP 109 (264)
Q Consensus 45 ~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~------~~~~---------~~~~~~~~h~~~v~~i~~~~~~~ 109 (264)
+.+..|++++.+.+|+|||.++++||.|-.|+++|++. +..+ ....++..|...|.++.|+|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre- 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE- 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-
Confidence 34568999999999999999999999999999999871 1111 1123456799999999999965
Q ss_pred CeEEEEeCCCcEEEEECCCCC---------------------cceEEEeecCCCcEEEEEeccCCCccceEEEeccccce
Q psy9316 110 DLLSTASGDKTVRIWDARTQK---------------------SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV 168 (264)
Q Consensus 110 ~~l~s~s~dg~i~vwd~~~~~---------------------~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i 168 (264)
.+|++|++|++|+++|+.... ....++.|..-..+++||++.-........-.+|++.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 799999999999999986531 11246677777889999987655444333446899999
Q ss_pred eeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee---EeecC-ceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCC
Q psy9316 169 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI---IATKG-ENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRE 243 (264)
Q Consensus 169 ~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~---~~~~~-~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~ 243 (264)
+++.+++. +.+.++++.||.|++||--+.++.. ..+.+ .+.+..|..+|+|+++.+.|.++++|.+..++...+
T Consensus 265 ~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 265 TQVRYSST-GSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred eEEEecCC-ccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence 99999985 5688899999999999998887632 23433 578899999999999999999999999987666543
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-22 Score=170.50 Aligned_cols=244 Identities=23% Similarity=0.366 Sum_probs=175.1
Q ss_pred CceEeecCCCeeEEEeecCceEEeccccc------ccccccc-CCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCC--
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTHN------DIKEYQA-HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG-- 84 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~-h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~-- 84 (264)
.-..+=|+|.-| .+++.|-+++.|+-.. .++.++. ...+|.+++|++.|..|+..+-....+++|-+-..
T Consensus 171 sal~~Dp~GaR~-~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~ 249 (641)
T KOG0772|consen 171 SALAVDPSGARF-VSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIV 249 (641)
T ss_pred EEeeecCCCcee-eeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceee
Confidence 334455666553 5789999999986422 2334432 34579999999999998888877888888744211
Q ss_pred -------CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce------------------------
Q psy9316 85 -------DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI------------------------ 133 (264)
Q Consensus 85 -------~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~------------------------ 133 (264)
.+.....-++|.+.+++-+|+|.....+++++.||++++||++..+.+.
T Consensus 250 e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg 329 (641)
T KOG0772|consen 250 EFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG 329 (641)
T ss_pred eeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCc
Confidence 1111122468999999999999999999999999999999998754321
Q ss_pred -EEEeecCCCcEEEEEeccCCCccceEEEecccc--ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe-----e
Q psy9316 134 -MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG--SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA-----T 205 (264)
Q Consensus 134 -~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~--~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~-----~ 205 (264)
.+++|..||+|++|+............-.+|.. .|.+|.|+++ +.+|+|-+.|+++++||++.....+.. .
T Consensus 330 ~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d-g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t 408 (641)
T KOG0772|consen 330 KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD-GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT 408 (641)
T ss_pred chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc-cchhhhccCCCceeeeeccccccchhhhcCCCc
Confidence 478899999999999754444344445567876 8999999974 578899999999999999986643222 1
Q ss_pred cCceEEEEEcCCCCEEEEeeC------CCeEEEEEcccCCCCCCCcccCcccceeeeeecccc
Q psy9316 206 KGENINITWAPNGNTIAVGNK------EDLVTFIDVVKSLPPRERTLTSRGHLMETRSLWGTK 262 (264)
Q Consensus 206 ~~~~~~v~~sp~g~~la~gs~------d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 262 (264)
.....+++|||+.+.+++|+. .+.+++||..+-... +++.-..+ .=+|++|..|
T Consensus 409 ~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v-~ki~i~~a--Svv~~~Whpk 468 (641)
T KOG0772|consen 409 PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV-YKIDISTA--SVVRCLWHPK 468 (641)
T ss_pred cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE-EEecCCCc--eEEEEeecch
Confidence 223467999999999999863 567999996542221 23333333 5578899765
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-22 Score=172.91 Aligned_cols=214 Identities=21% Similarity=0.334 Sum_probs=172.6
Q ss_pred EeccccccccccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEE
Q psy9316 36 KHFNTHNDIKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST 114 (264)
Q Consensus 36 ~~~~~~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s 114 (264)
+.|...+.++++.+|...|.++.|.| .+.+|++++.|+.|++|++-..+.+ ..+|.+|+.+|.+++|++.+ ..++|
T Consensus 199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~--lrtf~gH~k~Vrd~~~s~~g-~~fLS 275 (503)
T KOG0282|consen 199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC--LRTFKGHRKPVRDASFNNCG-TSFLS 275 (503)
T ss_pred eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce--ehhhhcchhhhhhhhccccC-Ceeee
Confidence 44556678889999999999999999 8999999999999999998754433 35688999999999999855 67779
Q ss_pred EeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcC
Q psy9316 115 ASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 175 (264)
Q Consensus 115 ~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~ 175 (264)
+|-|+.+++||+++++. +..+++|..|+.|..||++.+...+ .+..|-+.|..+.|-+
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---eYd~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---EYDRHLGAILDITFVD 352 (503)
T ss_pred eecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---HHHhhhhheeeeEEcc
Confidence 99999999999998753 2368899999999999998754333 2356788999999988
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcce-eEee--cCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccc
Q psy9316 176 TNPDLLSTASGDKTVRIWDARTQKSQ-IIAT--KGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHL 252 (264)
Q Consensus 176 ~~~~~i~s~~~dg~i~iwD~~t~~~~-~~~~--~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~ 252 (264)
.+ ..+++.+.|++++||+.+..... .+.. .....+++.+|+++++++-+-|+.+.++-+.. +.+..+..+++||-
T Consensus 353 ~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~-~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 353 EG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP-PFRLNKKKRFEGHS 430 (503)
T ss_pred CC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccc-ccccCHhhhhccee
Confidence 54 56778899999999999987642 2222 22356799999999999999999999999653 33345556788998
Q ss_pred eeeee
Q psy9316 253 METRS 257 (264)
Q Consensus 253 ~~~~~ 257 (264)
++..+
T Consensus 431 vaGys 435 (503)
T KOG0282|consen 431 VAGYS 435 (503)
T ss_pred ccCce
Confidence 87655
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-21 Score=160.46 Aligned_cols=232 Identities=22% Similarity=0.312 Sum_probs=178.3
Q ss_pred eecCCCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecc
Q psy9316 18 LLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH 95 (264)
Q Consensus 18 ~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h 95 (264)
.+|+ +++.++++.|...-+|+.. ..+..|.||.-.|+.+.|+|+...+++++.|..|++|...... .......|
T Consensus 227 ~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~~~~~~~h 302 (506)
T KOG0289|consen 227 IIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---EPTSSRPH 302 (506)
T ss_pred ecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc---Cccccccc
Confidence 3344 4566788888776666543 4567899999999999999999999999999999999865422 22346789
Q ss_pred cccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc---------------------ceEEEeecCCCcEEEEEeccCCC
Q psy9316 96 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---------------------QIMLASGSFDKSVAIFALDKKGD 154 (264)
Q Consensus 96 ~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---------------------~~~~~~~~~d~~i~i~~~~~~~~ 154 (264)
..+|+.+..+|.+ .+|++++.||++...|++++.. ..++.+|..|+.++||++....+
T Consensus 303 ~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~ 381 (506)
T KOG0289|consen 303 EEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN 381 (506)
T ss_pred cccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc
Confidence 9999999999965 7888999999999999887642 23578999999999999987654
Q ss_pred ccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc-eeEee--cCceEEEEEcCCCCEEEEeeCCCeEE
Q psy9316 155 LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIAT--KGENINITWAPNGNTIAVGNKEDLVT 231 (264)
Q Consensus 155 ~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~-~~~~~--~~~~~~v~~sp~g~~la~gs~d~~i~ 231 (264)
.. -|.+|+++|..|.|+. +++++++++.|++|++||++.-+. +.... ...+.++.|.+.|++|+.++.|-.|+
T Consensus 382 ~a---~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 382 VA---KFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred cc---cCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence 33 3678999999999985 678999999999999999997653 22222 23588999999999999998888888
Q ss_pred EEEcccCCCCCCCcccCcccceeeeeecc
Q psy9316 232 FIDVVKSLPPRERTLTSRGHLMETRSLWG 260 (264)
Q Consensus 232 ~~d~~~~~~~~~~~~~~~~h~~~~~~~~~ 260 (264)
+++-. --.+++...+--|.+....||-
T Consensus 458 ~~~k~--~k~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 458 ICKKK--TKSWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred EEecc--cccceeeehhhhcccccceeee
Confidence 88722 2233444444445555555553
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-21 Score=155.79 Aligned_cols=229 Identities=22% Similarity=0.369 Sum_probs=181.8
Q ss_pred EEeecCceEEec--cccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEec------cC---------------
Q psy9316 27 LVCKIDDYVKHF--NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALD------KK--------------- 83 (264)
Q Consensus 27 ~~~~~d~~~~~~--~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~------~~--------------- 83 (264)
.+++.|....+| +++.++-+|.+|.+.|++++|++.+.++++++-|++-.||... .+
T Consensus 164 gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s 243 (481)
T KOG0300|consen 164 GTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS 243 (481)
T ss_pred eecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc
Confidence 356777777777 5678899999999999999999999999999999999999611 00
Q ss_pred --------C--CCc------ccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC-----------------
Q psy9316 84 --------G--DLN------KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK----------------- 130 (264)
Q Consensus 84 --------~--~~~------~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~----------------- 130 (264)
+ ... +...+.+|.+.|.+..|.. +.+.++++|+|.+..+||+++++
T Consensus 244 De~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcst 322 (481)
T KOG0300|consen 244 DEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCST 322 (481)
T ss_pred cccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhcccccc
Confidence 0 000 1123568999999999986 45678899999999999998864
Q ss_pred --cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeec
Q psy9316 131 --SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATK 206 (264)
Q Consensus 131 --~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~ 206 (264)
.+.++++.+.|.+.++||++. .+.....|.+|+..|.+..|+-+ +.+++|+.|.+|+|||+++... ......
T Consensus 323 HptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~d--d~vVSgSDDrTvKvWdLrNMRsplATIRtd 398 (481)
T KOG0300|consen 323 HPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTD--DRVVSGSDDRTVKVWDLRNMRSPLATIRTD 398 (481)
T ss_pred CCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEecC--CceeecCCCceEEEeeeccccCcceeeecC
Confidence 244788999999999999974 34445578999999999999853 5788999999999999999774 334456
Q ss_pred CceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceee-eeecc
Q psy9316 207 GENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMET-RSLWG 260 (264)
Q Consensus 207 ~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~-~~~~~ 260 (264)
..++.++.+..+..+|.--.+..|++||++..+-++.-..+.+||.--| ++-|-
T Consensus 399 S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ 453 (481)
T KOG0300|consen 399 SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWL 453 (481)
T ss_pred CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecc
Confidence 6788999999899999999999999999998666665555677887554 44564
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=155.67 Aligned_cols=150 Identities=20% Similarity=0.277 Sum_probs=121.4
Q ss_pred cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCc
Q psy9316 41 HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 120 (264)
Q Consensus 41 ~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~ 120 (264)
...+.+|..|++.|.+++.+|+.+++++||.|..-.+|++.... ....+.+|+..|+++.|+. ++.+|++|..+|.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge---~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~ 129 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSH-DGTLLATGDMSGK 129 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc---ceeEecCCCCceEEEEEcc-CceEEEecCCCcc
Confidence 44567899999999999999999999999999999999987532 3345679999999999987 4579999999999
Q ss_pred EEEEECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEE
Q psy9316 121 VRIWDARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLL 181 (264)
Q Consensus 121 i~vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i 181 (264)
|++|+..++... ..+++|+.||++-+|.+...+ ....+.+|..++++=.|.|+ ++.+
T Consensus 130 v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~---~~kv~~Gh~~~ct~G~f~pd-GKr~ 205 (399)
T KOG0296|consen 130 VLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA---LCKVMSGHNSPCTCGEFIPD-GKRI 205 (399)
T ss_pred EEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc---eeeEecCCCCCcccccccCC-CceE
Confidence 999999886532 257899999999999886542 22356778888888778775 5677
Q ss_pred EEEeCCCcEEEEeCCCC
Q psy9316 182 STASGDKTVRIWDARTQ 198 (264)
Q Consensus 182 ~s~~~dg~i~iwD~~t~ 198 (264)
+++..||+|++||..++
T Consensus 206 ~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 206 LTGYDDGTIIVWNPKTG 222 (399)
T ss_pred EEEecCceEEEEecCCC
Confidence 77888888888888543
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-21 Score=169.43 Aligned_cols=214 Identities=21% Similarity=0.334 Sum_probs=175.0
Q ss_pred cCCCeeEEEeecCceEEeccccc--------cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEE
Q psy9316 20 PSGSQFHLVCKIDDYVKHFNTHN--------DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91 (264)
Q Consensus 20 ~~~~~~~~~~~~d~~~~~~~~~~--------~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~ 91 (264)
+.+...+.+++-||.|+.|.... .+.+++.|.+.|+++....+++.|+++|.|.+|++|+...... ....+
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~-~c~st 112 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT-FCMST 112 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-hhHhh
Confidence 44455667788899999996532 2557889999999999999999999999999999999876432 22345
Q ss_pred EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc------------------------------ceEEEeecCC
Q psy9316 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS------------------------------QIMLASGSFD 141 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~------------------------------~~~~~~~~~d 141 (264)
+..|..-|.+++.-..+..+++|||-|+.|++||++++.. ..++++|+..
T Consensus 113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte 192 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE 192 (735)
T ss_pred hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc
Confidence 7789999999999666778999999999999999986521 1257888899
Q ss_pred CcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce--eEeecCceEEEEEcCCCC
Q psy9316 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--IIATKGENINITWAPNGN 219 (264)
Q Consensus 142 ~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~--~~~~~~~~~~v~~sp~g~ 219 (264)
+.+++||.+.+...- .+++|+..|..+..++ ++..++|++.||+|++||+..+.+. ...+...+.++.-+|+=+
T Consensus 193 k~lr~wDprt~~kim---kLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~ 268 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIM---KLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFT 268 (735)
T ss_pred cceEEecccccccee---eeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcc
Confidence 999999988755432 3579999999999986 4567889999999999999988863 345666788999999999
Q ss_pred EEEEeeCCCeEEEEEcccC
Q psy9316 220 TIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 220 ~la~gs~d~~i~~~d~~~~ 238 (264)
++.+|+.|+.|+.=|++..
T Consensus 269 ~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 269 HVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eEEecCCCCcEEecccCCc
Confidence 9999999999999998863
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=169.00 Aligned_cols=206 Identities=26% Similarity=0.356 Sum_probs=160.9
Q ss_pred eEEEeecCceEEeccccc--cccc-cccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEe
Q psy9316 25 FHLVCKIDDYVKHFNTHN--DIKE-YQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101 (264)
Q Consensus 25 ~~~~~~~d~~~~~~~~~~--~~~~-~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~ 101 (264)
+.+.+..+.+++.|+..+ .+.. +.+|.+.|.++++..-+.+|++|+.|.++++||... +. ...++.+|.+.|.+
T Consensus 220 ~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-g~--C~~~l~gh~stv~~ 296 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-GE--CTHSLQGHTSSVRC 296 (537)
T ss_pred eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-Cc--EEEEecCCCceEEE
Confidence 445677888998887643 3445 899999999999987789999999999999999754 33 33567899999999
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCCCCcc-----------------eEEEeecCCCcEEEEEeccCCCccceEEEecc
Q psy9316 102 LCWHATNPDLLSTASGDKTVRIWDARTQKSQ-----------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164 (264)
Q Consensus 102 i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h 164 (264)
+... +.++++||.|.+|++|++.++... ..+++|++|++|.+|+...... ...+.+|
T Consensus 297 ~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~c---l~sl~gH 370 (537)
T KOG0274|consen 297 LTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKC---LKSLSGH 370 (537)
T ss_pred EEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhcee---eeeecCC
Confidence 8764 467788899999999999876532 2578999999999999874322 2356889
Q ss_pred ccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCC-ccee-Ee-ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCC
Q psy9316 165 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ-KSQI-IA-TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPP 241 (264)
Q Consensus 165 ~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~-~~~~-~~-~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~ 241 (264)
..+|.++.+.+. ..+++|+.|++|++||++++ ++.. .. +...+ -.+...++.|.+++.|+.|++||..++.+.
T Consensus 371 ~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v--~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 371 TGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV--SSLLLRDNFLVSSSADGTIKLWDAEEGECL 446 (537)
T ss_pred cceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCcccc--cccccccceeEeccccccEEEeecccCcee
Confidence 999999987642 68899999999999999998 5421 11 12222 234567899999999999999999887665
Q ss_pred CC
Q psy9316 242 RE 243 (264)
Q Consensus 242 ~~ 243 (264)
++
T Consensus 447 ~~ 448 (537)
T KOG0274|consen 447 RT 448 (537)
T ss_pred ee
Confidence 53
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=175.65 Aligned_cols=164 Identities=23% Similarity=0.467 Sum_probs=137.9
Q ss_pred CEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc
Q psy9316 53 KVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 131 (264)
Q Consensus 53 ~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~ 131 (264)
.+..+.|.. +.++||+++..|.|.+||++....-.....|..|+..+.+++|++..+++|+|||.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 355677875 6789999999999999999874433333457899999999999999999999999999999999997553
Q ss_pred ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc---ceeEeecCc
Q psy9316 132 QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK---SQIIATKGE 208 (264)
Q Consensus 132 ~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~---~~~~~~~~~ 208 (264)
.. ++++....|..+.|+|..+..|+++.+.|.+++||++-.. .++.++.+.
T Consensus 169 ~~--------------------------t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp 222 (839)
T KOG0269|consen 169 KS--------------------------TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP 222 (839)
T ss_pred cc--------------------------cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc
Confidence 32 2344556899999999888999999999999999999755 255678899
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 209 NINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 209 ~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
+.++.|+|++.+||+|+.|++++|||..+++..+
T Consensus 223 V~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~ 256 (839)
T KOG0269|consen 223 VLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP 256 (839)
T ss_pred eEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence 9999999999999999999999999988766554
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.9e-21 Score=157.96 Aligned_cols=192 Identities=24% Similarity=0.450 Sum_probs=145.9
Q ss_pred CeeEEEeecCceEEecccc------------------ccccccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccC
Q psy9316 23 SQFHLVCKIDDYVKHFNTH------------------NDIKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKK 83 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~~------------------~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~ 83 (264)
+++..+.+..|-+++|... ..+.++.+|++.=..|+||| .-..|++|.--+.|.+|.....
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g 244 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG 244 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC
Confidence 3434445556667777542 23456889999899999999 3345788877789999988763
Q ss_pred CCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEec
Q psy9316 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163 (264)
Q Consensus 84 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 163 (264)
.-.....-+.+|+.+|-+++|+|.....|+|||.||.|++||+|+++.... ...+.
T Consensus 245 ~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~------------------------~~~kA 300 (440)
T KOG0302|consen 245 SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA------------------------VSTKA 300 (440)
T ss_pred ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce------------------------eEeec
Confidence 211111225579999999999999889999999999999999998743211 12367
Q ss_pred cccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc-----eeEeecCceEEEEEcCCC-CEEEEeeCCCeEEEEEccc
Q psy9316 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-----QIIATKGENINITWAPNG-NTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 164 h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~-----~~~~~~~~~~~v~~sp~g-~~la~gs~d~~i~~~d~~~ 237 (264)
|.+-|+.|.|+-.-+ +||+|+.||+++|||+++.+. .+..+..++.+|.|+|.. ..+++++.|+.|.+||+.-
T Consensus 301 h~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 301 HNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred cCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 889999999986544 899999999999999997652 344567889999999954 5778889999999999874
Q ss_pred CC
Q psy9316 238 SL 239 (264)
Q Consensus 238 ~~ 239 (264)
..
T Consensus 380 E~ 381 (440)
T KOG0302|consen 380 EA 381 (440)
T ss_pred cC
Confidence 33
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=161.42 Aligned_cols=223 Identities=20% Similarity=0.330 Sum_probs=169.0
Q ss_pred EeecCCCCCceEeecCCCeeEEEeecCceEEecccc----ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEec
Q psy9316 6 IQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTH----NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALD 81 (264)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~ 81 (264)
+.+|.-+..+..+++..+ -+.+++.|..|++|+.. +.+.++.+-.++|+++.|.++++++++++.|+.+++|+++
T Consensus 171 ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred hhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 445555556666666543 34578889999999763 3456778888999999999999999999999999999987
Q ss_pred cCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc----------------ceEEEeecCCCcEE
Q psy9316 82 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS----------------QIMLASGSFDKSVA 145 (264)
Q Consensus 82 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------------~~~~~~~~~d~~i~ 145 (264)
. .....++.+|+..|+++.|.... ..+++|+.|.++++||+.+..+ ...+.+|-.|+.|+
T Consensus 250 ~---~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 250 S---LRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVR 325 (459)
T ss_pred c---hhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceE
Confidence 4 22334578999999999987543 3488999999999999976432 22467788999999
Q ss_pred EEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-Eeec----C-ceEEEEEcCCCC
Q psy9316 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATK----G-ENINITWAPNGN 219 (264)
Q Consensus 146 i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~----~-~~~~v~~sp~g~ 219 (264)
+||.+....... ... .+.|+++..++++. -+.+++-|.++.+.|+++.+... ..-. + ....+.|||++.
T Consensus 326 fwD~Rs~~~~~s---v~~-gg~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 326 FWDIRSADKTRS---VPL-GGRVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred EEeccCCceeeE---eec-CcceeeEeeccCCe-EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence 999876443221 122 24899999987654 45566899999999999987422 1111 1 245689999999
Q ss_pred EEEEeeCCCeEEEEEcccC
Q psy9316 220 TIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 220 ~la~gs~d~~i~~~d~~~~ 238 (264)
|+|+||.||.|+||++.++
T Consensus 401 YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred eeeeccCCCcEEEEEccCc
Confidence 9999999999999998764
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=169.53 Aligned_cols=191 Identities=21% Similarity=0.385 Sum_probs=152.7
Q ss_pred CeeEEEeecCceEEeccccc-----cccccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCcccEEEeccc
Q psy9316 23 SQFHLVCKIDDYVKHFNTHN-----DIKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~~~-----~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~ 96 (264)
++++.+|+..|.|-.|+... .+..|..|...|+++.|++ ...+|++||+||.|+.||+..+... ..+.+..
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~---~t~~~nS 176 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK---STFRSNS 176 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc---ccccccc
Confidence 55667899999999997754 4567899999999999998 7789999999999999999754332 2356677
Q ss_pred ccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCC
Q psy9316 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 176 (264)
Q Consensus 97 ~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~ 176 (264)
..|.++.|+|..++.|+++...|.+.+||++.... ....+.+|.++|.++.|+|
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-------------------------~~~k~~AH~GpV~c~nwhP- 230 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-------------------------CEKKLTAHNGPVLCLNWHP- 230 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCchh-------------------------HHHHhhcccCceEEEeecC-
Confidence 88999999999999999999999999999985321 1123578999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCccee---EeecCceEEEEEcCCCCEE-EEee--CCCeEEEEEcccCCCCC
Q psy9316 177 NPDLLSTASGDKTVRIWDARTQKSQI---IATKGENINITWAPNGNTI-AVGN--KEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 177 ~~~~i~s~~~dg~i~iwD~~t~~~~~---~~~~~~~~~v~~sp~g~~l-a~gs--~d~~i~~~d~~~~~~~~ 242 (264)
++.+||||+-|++|+|||+.+.+... ......+.+|+|=|...+. |+++ .|.-|+|||++...-+.
T Consensus 231 nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~ 302 (839)
T KOG0269|consen 231 NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY 302 (839)
T ss_pred CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc
Confidence 67899999999999999998765422 2234567789999988754 5553 46679999998755543
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=147.77 Aligned_cols=205 Identities=21% Similarity=0.361 Sum_probs=154.5
Q ss_pred CceEeecCCCeeEEEeecCceEEecccccc-ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEE
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTHND-IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY 92 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~ 92 (264)
...++.|+.+. +++++|||.+++|+.... ++..-.|+.++.+++|.+ ...+++|+.||.|+.+|++... ...+
T Consensus 17 S~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~----~~~i 90 (323)
T KOG1036|consen 17 SSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN----EDQI 90 (323)
T ss_pred eeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc----ceee
Confidence 34567766665 566789999999976543 223336899999999975 5778899999999999998633 2346
Q ss_pred ecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc----------------ceEEEeecCCCcEEEEEeccCCCc-
Q psy9316 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS----------------QIMLASGSFDKSVAIFALDKKGDL- 155 (264)
Q Consensus 93 ~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------------~~~~~~~~~d~~i~i~~~~~~~~~- 155 (264)
..|...|.++...+.. ..+++||+|++|++||.+.... ...++.|..|..+.+||++.....
T Consensus 91 gth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred ccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchh
Confidence 6899999999998754 5788999999999999984211 113566778888888887643210
Q ss_pred --------------------------------------------cceEEEeccc---------cceeeEEEcCCCCCEEE
Q psy9316 156 --------------------------------------------NKEVVYRGHT---------GSVDQLCWHATNPDLLS 182 (264)
Q Consensus 156 --------------------------------------------~~~~~~~~h~---------~~i~~i~~~~~~~~~i~ 182 (264)
.+...|++|. -+|++|+|+|. ...|+
T Consensus 170 q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~-~~tfa 248 (323)
T KOG1036|consen 170 QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI-HGTFA 248 (323)
T ss_pred hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc-cceEE
Confidence 1123466664 36899999996 45789
Q ss_pred EEeCCCcEEEEeCCCCcceeEee--cCceEEEEEcCCCCEEEEeeC
Q psy9316 183 TASGDKTVRIWDARTQKSQIIAT--KGENINITWAPNGNTIAVGNK 226 (264)
Q Consensus 183 s~~~dg~i~iwD~~t~~~~~~~~--~~~~~~v~~sp~g~~la~gs~ 226 (264)
||+.||.|.+||+.+++...+.+ ...+.+++|+.+|..||+|+.
T Consensus 249 TgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 249 TGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999987544433 345788999999999999983
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-20 Score=166.00 Aligned_cols=166 Identities=19% Similarity=0.351 Sum_probs=126.1
Q ss_pred EECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEE
Q psy9316 69 GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFA 148 (264)
Q Consensus 69 ~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~ 148 (264)
|+.++.+++|+.... .....+.+|.+.|.+++|+|.++.+|++|+.||+|++||+.+......
T Consensus 50 GG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-------------- 112 (568)
T PTZ00420 50 GGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-------------- 112 (568)
T ss_pred CCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--------------
Confidence 677889999986532 233457899999999999997678999999999999999975321100
Q ss_pred eccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE-eecCceEEEEEcCCCCEEEEeeCC
Q psy9316 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII-ATKGENINITWAPNGNTIAVGNKE 227 (264)
Q Consensus 149 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~gs~d 227 (264)
........+.+|...|.+++|+|....++++++.|++|+|||+++++.... .+...+.+++|+|+|++|++++.|
T Consensus 113 ----~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D 188 (568)
T PTZ00420 113 ----EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVG 188 (568)
T ss_pred ----ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecC
Confidence 000011235678899999999998766788999999999999998874322 234568899999999999999999
Q ss_pred CeEEEEEcccCCCCCCCcccCccccee--eeeec
Q psy9316 228 DLVTFIDVVKSLPPRERTLTSRGHLME--TRSLW 259 (264)
Q Consensus 228 ~~i~~~d~~~~~~~~~~~~~~~~h~~~--~~~~~ 259 (264)
+.|++||++.+... .++.||... .+.+|
T Consensus 189 ~~IrIwD~Rsg~~i----~tl~gH~g~~~s~~v~ 218 (568)
T PTZ00420 189 KHMHIIDPRKQEIA----SSFHIHDGGKNTKNIW 218 (568)
T ss_pred CEEEEEECCCCcEE----EEEecccCCceeEEEE
Confidence 99999999865432 345677653 46666
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=159.86 Aligned_cols=190 Identities=25% Similarity=0.287 Sum_probs=148.7
Q ss_pred EEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeE
Q psy9316 35 VKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLL 112 (264)
Q Consensus 35 ~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l 112 (264)
+.+|... ...++|...+..|.++.|-.||++++.|...|.|++||+.. . .....+++|+.+|..+.|+|++...+
T Consensus 50 vqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r-~iLR~~~ah~apv~~~~f~~~d~t~l 126 (487)
T KOG0310|consen 50 VQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--R-VILRQLYAHQAPVHVTKFSPQDNTML 126 (487)
T ss_pred EEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--H-HHHHHHhhccCceeEEEecccCCeEE
Confidence 3445443 34556667788999999999999999999999999999543 1 12234789999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEE
Q psy9316 113 STASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 192 (264)
Q Consensus 113 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~i 192 (264)
++|+.|+.+++||+.+... .....+|++.|.+.+|+|.++.+++||+.||.|++
T Consensus 127 ~s~sDd~v~k~~d~s~a~v--------------------------~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 127 VSGSDDKVVKYWDLSTAYV--------------------------QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred EecCCCceEEEEEcCCcEE--------------------------EEEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 9999999999999986431 11346899999999999988889999999999999
Q ss_pred EeCCCCcc-eeEee-cCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcc-cceeeeee
Q psy9316 193 WDARTQKS-QIIAT-KGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRG-HLMETRSL 258 (264)
Q Consensus 193 wD~~t~~~-~~~~~-~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~-h~~~~~~~ 258 (264)
||+++... ..... ..++.++.+-|.|..+|+++ .+.+++||+.++...- ..++ |.-.|+||
T Consensus 181 ~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll----~~~~~H~KtVTcL 244 (487)
T KOG0310|consen 181 WDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLL----TSMFNHNKTVTCL 244 (487)
T ss_pred EEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceeh----hhhhcccceEEEE
Confidence 99999843 33333 34577899999999999998 5677999998655432 2333 66666665
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=145.84 Aligned_cols=190 Identities=20% Similarity=0.293 Sum_probs=146.9
Q ss_pred ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEE
Q psy9316 46 EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd 125 (264)
.+++|..+++.+.++.+|++|++++.|.+..+|-... + +..-.+.+|++.|.++..+- +...+++|+.|.++++||
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-G--erlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-G--ERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWD 80 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecC-C--ceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEE
Confidence 4679999999999999999999999999999996533 3 23356899999999998875 446888999999999999
Q ss_pred CCCCCcceEE-------------------Ee----ecCCCcEEEEEeccCC----CccceEEEeccccceeeEEEcCCCC
Q psy9316 126 ARTQKSQIML-------------------AS----GSFDKSVAIFALDKKG----DLNKEVVYRGHTGSVDQLCWHATNP 178 (264)
Q Consensus 126 ~~~~~~~~~~-------------------~~----~~~d~~i~i~~~~~~~----~~~~~~~~~~h~~~i~~i~~~~~~~ 178 (264)
+++++....+ ++ .++.+.|.+++++... ...+......+.+.++..-|.|.+
T Consensus 81 v~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~- 159 (327)
T KOG0643|consen 81 VETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG- 159 (327)
T ss_pred cCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC-
Confidence 9998743211 11 1234567788776322 111122334566789999999864
Q ss_pred CEEEEEeCCCcEEEEeCCCCcceeE---eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 179 DLLSTASGDKTVRIWDARTQKSQII---ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 179 ~~i~s~~~dg~i~iwD~~t~~~~~~---~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
+.|++|.+||.|..||+++++.... .+...++++.++||..++++||.|.+.++||+++-..
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v 224 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV 224 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceee
Confidence 6888999999999999999865433 3445688999999999999999999999999876433
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-20 Score=170.77 Aligned_cols=219 Identities=23% Similarity=0.422 Sum_probs=158.6
Q ss_pred CCCceEeecCCCeeEEEeecCce-------------EEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEE
Q psy9316 12 KSPEYKLLPSGSQFHLVCKIDDY-------------VKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIF 78 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~d~~-------------~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~ 78 (264)
+|||++++|+|+...++--|+.. .+.-+..+.+..+.+|.+.|..+.|+|++.+|+++|.|++|.+|
T Consensus 77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIW 156 (942)
T ss_pred ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEE
Confidence 56777777777654332111111 11112234567889999999999999999999999999999999
Q ss_pred EeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------ce------------
Q psy9316 79 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------QI------------ 133 (264)
Q Consensus 79 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------~~------------ 133 (264)
+..+ .....++++|.+.|..+.|+|.+ ++|++-+.|+++++|++..=.. ..
T Consensus 157 n~~t---F~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~ 232 (942)
T KOG0973|consen 157 NAKT---FELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH 232 (942)
T ss_pred cccc---ceeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC
Confidence 8653 34556789999999999999977 7999999999999999644100 00
Q ss_pred EEEee-cCC---CcEEEEEeccCCCccceEEEeccccceeeEEEcCC----CCC------------EEEEEeCCCcEEEE
Q psy9316 134 MLASG-SFD---KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT----NPD------------LLSTASGDKTVRIW 193 (264)
Q Consensus 134 ~~~~~-~~d---~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~----~~~------------~i~s~~~dg~i~iw 193 (264)
+++++ +.+ -.+.|.+. +.......+-+|.+++.++.|+|. ... ++|+|+.|++|-||
T Consensus 233 ~las~nA~n~~~~~~~IieR---~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW 309 (942)
T KOG0973|consen 233 HLASPNAVNGGKSTIAIIER---GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW 309 (942)
T ss_pred eecchhhccCCcceeEEEec---CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence 11111 111 12344332 223334567899999999999983 112 78999999999999
Q ss_pred eCCCCcceeE---eecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 194 DARTQKSQII---ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 194 D~~t~~~~~~---~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.....+..+. .....+.+++|+|||-.|.++|.||.|.++...+
T Consensus 310 ~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 310 NTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 9877665333 2356788999999999999999999999999775
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.6e-21 Score=158.00 Aligned_cols=202 Identities=21% Similarity=0.357 Sum_probs=158.2
Q ss_pred cccccCCCCEEEEEECCCC-CeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEE
Q psy9316 45 KEYQAHGSKVHSVAWSCDG-RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123 (264)
Q Consensus 45 ~~~~~h~~~V~~l~~s~~g-~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~v 123 (264)
-.+.+|.+.|.||+=+|.. ..+++|+.||.|++||+.... ....+++|.+.|.++++.. ..+++++.|++|+.
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~---~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE---CIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQ 133 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh---hhheeecccCceeeEEecc---cceEEecCCcceee
Confidence 3467999999999999976 789999999999999987532 2346889999999999975 45778999999999
Q ss_pred EECCCCCc----------------------------------------------------------ceEEEeecCCCcEE
Q psy9316 124 WDARTQKS----------------------------------------------------------QIMLASGSFDKSVA 145 (264)
Q Consensus 124 wd~~~~~~----------------------------------------------------------~~~~~~~~~d~~i~ 145 (264)
|-++.... ..+++++..|++|.
T Consensus 134 wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 134 WKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred eeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 97432100 01357777899999
Q ss_pred EEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecC---ceEEEEEcCCCCEEE
Q psy9316 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKG---ENINITWAPNGNTIA 222 (264)
Q Consensus 146 i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~---~~~~v~~sp~g~~la 222 (264)
+||++....+.+... ...-+.|+|+| ....|++|.+|-.++.||++.-+..+..+.+ .+.+|+|||-|+-++
T Consensus 214 LyD~R~~~Pl~KVi~----~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 214 LYDLRQASPLKKVIL----TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred EEecccCCccceeee----eccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence 999987766554322 24567899999 7778999999999999999987654444443 467899999999999
Q ss_pred EeeCCCeEEEEEcccCCCCCCCcccCcccceeeee
Q psy9316 223 VGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRS 257 (264)
Q Consensus 223 ~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~ 257 (264)
+||-|..|+||.++.+..-.......|-|...|.+
T Consensus 289 sgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~ 323 (433)
T KOG0268|consen 289 SGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKY 323 (433)
T ss_pred cccccceEEEeecCCCcchhhhhHhhhheeeEEEE
Confidence 99999999999999866655566666777666654
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=160.06 Aligned_cols=225 Identities=21% Similarity=0.341 Sum_probs=165.0
Q ss_pred CCCceEeecCC-CeeEEEeecCceEE-eccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCccc
Q psy9316 12 KSPEYKLLPSG-SQFHLVCKIDDYVK-HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE 89 (264)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~~~d~~~~-~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~ 89 (264)
+|||+++++.+ +.+.-+...=+.++ .|.+-..-++|.+|-..|.++.|+.|.++|++||.|-+.++|.++..... ..
T Consensus 104 fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~-~~ 182 (893)
T KOG0291|consen 104 FSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL-FT 182 (893)
T ss_pred ECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc-ce
Confidence 56888888865 33333444444444 45555566788999999999999999999999999999999998754442 24
Q ss_pred EEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC-----------------------Cc---------------
Q psy9316 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ-----------------------KS--------------- 131 (264)
Q Consensus 90 ~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~-----------------------~~--------------- 131 (264)
..+.+|...|..+-|.. +...+.+.+.||.+.+|..... ++
T Consensus 183 ~~l~gHkd~VvacfF~~-~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 183 YALNGHKDYVVACFFGA-NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred EeccCCCcceEEEEecc-CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 55789999999887765 5567889999999999976510 00
Q ss_pred ---------------ceEEEeecCCC-------------------------------------------cEEEEEeccCC
Q psy9316 132 ---------------QIMLASGSFDK-------------------------------------------SVAIFALDKKG 153 (264)
Q Consensus 132 ---------------~~~~~~~~~d~-------------------------------------------~i~i~~~~~~~ 153 (264)
..++++|-..| .+-+|.+....
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence 00223333333 33344443322
Q ss_pred CccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE--eecCceEEEEEcCCCCEEEEeeCCCeEE
Q psy9316 154 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII--ATKGENINITWAPNGNTIAVGNKEDLVT 231 (264)
Q Consensus 154 ~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~--~~~~~~~~v~~sp~g~~la~gs~d~~i~ 231 (264)
.+ ....+|...+.++.++|+ +.+|++|++||.|+|||..++-+... .+...+..+.|+..|+.|++.|-||+|+
T Consensus 342 YV---lKQQgH~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVR 417 (893)
T KOG0291|consen 342 YV---LKQQGHSDRITSLAYSPD-GQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVR 417 (893)
T ss_pred ee---eeccccccceeeEEECCC-CcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEE
Confidence 21 123578999999999985 57999999999999999999876443 4566789999999999999999999999
Q ss_pred EEEcccCCCCC
Q psy9316 232 FIDVVKSLPPR 242 (264)
Q Consensus 232 ~~d~~~~~~~~ 242 (264)
.||+...+.-+
T Consensus 418 AwDlkRYrNfR 428 (893)
T KOG0291|consen 418 AWDLKRYRNFR 428 (893)
T ss_pred eeeecccceee
Confidence 99987655444
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.2e-20 Score=163.19 Aligned_cols=201 Identities=22% Similarity=0.300 Sum_probs=136.5
Q ss_pred ceEeecCCCCCceEeecCCCeeEEEeecCceEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccC
Q psy9316 4 PVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83 (264)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~ 83 (264)
|...|.++++--+.+......-.++++||.+.++|...+....+++|...|.++..-|++ .++|||.|++|++|.-
T Consensus 93 P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--- 168 (745)
T KOG0301|consen 93 PLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--- 168 (745)
T ss_pred chhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC---
Confidence 556666666666665544333346677777777777777666777777777777776666 5567777777777742
Q ss_pred CCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEec
Q psy9316 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163 (264)
Q Consensus 84 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 163 (264)
+. ...++.+|++-|..+++.++. .++|++.||.|++||+.. +. .....+
T Consensus 169 ~~--~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~g-e~--------------------------l~~~~g 217 (745)
T KOG0301|consen 169 GT--LLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLDG-EV--------------------------LLEMHG 217 (745)
T ss_pred Cc--hhhhhccchhheeeeEEecCC--CeEeecCCceEEEEeccC-ce--------------------------eeeeec
Confidence 22 123466777777777776532 355777777777777632 21 124578
Q ss_pred cccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecC-ceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKG-ENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 164 h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~-~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
|+.-|+++.... +...|+|+++|++++||+...- .+...++. .+++++.-++|+.+ +|+.||.|++|-+.+.+-..
T Consensus 218 htn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~e~-~q~I~lPttsiWsa~~L~NgDIv-vg~SDG~VrVfT~~k~R~As 294 (745)
T KOG0301|consen 218 HTNFVYSISMAL-SDGLIVSTGEDRTLRIWKKDEC-VQVITLPTTSIWSAKVLLNGDIV-VGGSDGRVRVFTVDKDRKAS 294 (745)
T ss_pred cceEEEEEEecC-CCCeEEEecCCceEEEeecCce-EEEEecCccceEEEEEeeCCCEE-EeccCceEEEEEecccccCC
Confidence 999999998544 3468899999999999988822 24455555 68888888888876 56669999999988655544
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=160.11 Aligned_cols=232 Identities=21% Similarity=0.332 Sum_probs=167.6
Q ss_pred CCeeEEEeecCceEEeccccc--------cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe
Q psy9316 22 GSQFHLVCKIDDYVKHFNTHN--------DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR 93 (264)
Q Consensus 22 ~~~~~~~~~~d~~~~~~~~~~--------~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~ 93 (264)
-.|++..+..||.|.++++.. .++.+..|...|.++.|-|...+|++++-|.+++.||++... ......+.
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~-l~G~~~~~ 141 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR-LVGGRLNL 141 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce-eecceeec
Confidence 356666788899999987632 145567899999999999977789999999999999998643 33333577
Q ss_pred cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc------------------------------------------
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS------------------------------------------ 131 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~------------------------------------------ 131 (264)
+|...|.++||+|.++..|++|++||.|.|||++-...
T Consensus 142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssv 221 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSV 221 (720)
T ss_pred ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeee
Confidence 99999999999999999999999999999999864210
Q ss_pred -------ceEEEeec-CCCcEEEEEeccCCCccce-----EEEecc---ccceeeEEEcCCCCCEEEEEeCCCcEEEEeC
Q psy9316 132 -------QIMLASGS-FDKSVAIFALDKKGDLNKE-----VVYRGH---TGSVDQLCWHATNPDLLSTASGDKTVRIWDA 195 (264)
Q Consensus 132 -------~~~~~~~~-~d~~i~i~~~~~~~~~~~~-----~~~~~h---~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~ 195 (264)
...+++++ .|+.|++||++......+. .-+.-| .-++..++....+..++|+ |.|++|++||+
T Consensus 222 Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As-CtD~sIy~ynm 300 (720)
T KOG0321|consen 222 TVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS-CTDNSIYFYNM 300 (720)
T ss_pred EEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE-ecCCcEEEEec
Confidence 01245544 4999999999864332110 011112 2246666666555556665 56999999999
Q ss_pred CCCcceeEe-ecCc-----eEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 196 RTQKSQIIA-TKGE-----NINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 196 ~t~~~~~~~-~~~~-----~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
.+....... +.+. -..-..+|++.+++.|+.|..+++|.+.... +-..-+.||+-||.+|
T Consensus 301 ~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e---~~~~~l~Ght~eVt~V 366 (720)
T KOG0321|consen 301 RSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE---APPALLLGHTREVTTV 366 (720)
T ss_pred cccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc---CChhhhhCcceEEEEE
Confidence 987642221 1111 1223479999999999999999999987632 2335678999999887
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=161.00 Aligned_cols=238 Identities=21% Similarity=0.285 Sum_probs=179.8
Q ss_pred eecCCCCCceEeecCCCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCC
Q psy9316 7 QFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG 84 (264)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~ 84 (264)
++.++.+.--.+--+.++.++..+..+.+++|+.. .+++++. .+.+.+..|-|.+++++.|...|.+.+||+....
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec--cccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 33333333333333444545555556677888764 5566664 3488999999999999999999999999986532
Q ss_pred CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC-------------------------------cce
Q psy9316 85 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-------------------------------SQI 133 (264)
Q Consensus 85 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~-------------------------------~~~ 133 (264)
-. ...++|.+.+..++..|++ ..+++||.|.+|++||+..-. ...
T Consensus 446 l~---Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 446 LV---ETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred hh---hhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 22 2356999999999999965 567899999999999974210 011
Q ss_pred EEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEE
Q psy9316 134 MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENIN 211 (264)
Q Consensus 134 ~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~ 211 (264)
+++.+-.|.++++|-++. +--...+-+|.-||.++..+|+ +.+++||+.|..|++|-+.=+.+ .+.++++.+.+
T Consensus 522 ~LaVsLLdnTVkVyflDt---lKFflsLYGHkLPV~smDIS~D-SklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~ 597 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDT---LKFFLSLYGHKLPVLSMDISPD-SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS 597 (888)
T ss_pred EEEEEeccCeEEEEEecc---eeeeeeecccccceeEEeccCC-cCeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence 355666777888887653 1122345799999999999984 67999999999999996665554 55678888999
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 212 ITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 212 v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
+.|-|....+.++++|+.++.||- .+.++..++.||..|++||
T Consensus 598 V~F~P~~~~FFt~gKD~kvKqWDg----~kFe~iq~L~~H~~ev~cL 640 (888)
T KOG0306|consen 598 VQFLPKTHLFFTCGKDGKVKQWDG----EKFEEIQKLDGHHSEVWCL 640 (888)
T ss_pred EEEcccceeEEEecCcceEEeech----hhhhhheeeccchheeeee
Confidence 999999999999999999999994 4677788899999999987
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=146.85 Aligned_cols=178 Identities=21% Similarity=0.348 Sum_probs=133.6
Q ss_pred ccCCCCEEEEEECCCC-CeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEEC
Q psy9316 48 QAHGSKVHSVAWSCDG-RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 126 (264)
Q Consensus 48 ~~h~~~V~~l~~s~~g-~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~ 126 (264)
....+.|.+|+|||.. ..++.+|+|++|++|+++..+.... .....|.++|.+++|+.++ ..+++|+.|+.+++||+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEc
Confidence 4557889999999954 5555889999999999987554333 3355799999999999755 78889999999999999
Q ss_pred CCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCC-CCEEEEEeCCCcEEEEeCCCCcc-eeEe
Q psy9316 127 RTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN-PDLLSTASGDKTVRIWDARTQKS-QIIA 204 (264)
Q Consensus 127 ~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~-~~~i~s~~~dg~i~iwD~~t~~~-~~~~ 204 (264)
.+++.. .+..|.++|..+.|.+.. ...|+||+.|.+|++||+++... ....
T Consensus 102 ~S~Q~~---------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~ 154 (347)
T KOG0647|consen 102 ASGQVS---------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ 154 (347)
T ss_pred cCCCee---------------------------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee
Confidence 886532 235688899999998743 34789999999999999998764 3344
Q ss_pred ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 205 TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 205 ~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
.++++.+++ --...++++.+++-|.+|+++.+.....+..++. ..++|||
T Consensus 155 LPeRvYa~D--v~~pm~vVata~r~i~vynL~n~~te~k~~~SpL--k~Q~R~v 204 (347)
T KOG0647|consen 155 LPERVYAAD--VLYPMAVVATAERHIAVYNLENPPTEFKRIESPL--KWQTRCV 204 (347)
T ss_pred ccceeeehh--ccCceeEEEecCCcEEEEEcCCCcchhhhhcCcc--cceeeEE
Confidence 556665543 3356889999999999999987554443443332 3566665
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=152.80 Aligned_cols=189 Identities=19% Similarity=0.343 Sum_probs=154.3
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEE
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~v 123 (264)
.+.++.|.+.|..+.|+++|++||+|+.|.+..+|++......+...++.+|..+|..+.|+|++ +++++++.|..+.+
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSL 295 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCchHheee
Confidence 45678999999999999999999999999999999988766655556678999999999999966 78888999999999
Q ss_pred EECCCCCcc--------------------eEEEeecCCCcEEEEEeccCCCccceEEEecc-ccceeeEEEcCCCCCEEE
Q psy9316 124 WDARTQKSQ--------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGH-TGSVDQLCWHATNPDLLS 182 (264)
Q Consensus 124 wd~~~~~~~--------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h-~~~i~~i~~~~~~~~~i~ 182 (264)
||+.++... ..+++|+.|+.|..|+++- ++... ..+- ...|.+++..+++ ..++
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg--n~~~~--W~gvr~~~v~dlait~Dg-k~vl 370 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG--NILGN--WEGVRDPKVHDLAITYDG-KYVL 370 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc--chhhc--ccccccceeEEEEEcCCC-cEEE
Confidence 999886421 2489999999999999753 22111 1111 2468889998755 5666
Q ss_pred EEeCCCcEEEEeCCCCcce-eEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 183 TASGDKTVRIWDARTQKSQ-IIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 183 s~~~dg~i~iwD~~t~~~~-~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
+.+.|..|++++.++.... .......+.++.+|.+|+++.+--.+..+.+||+.+.
T Consensus 371 ~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh
Confidence 6789999999999988754 5556678899999999999999999999999998753
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-19 Score=156.28 Aligned_cols=226 Identities=23% Similarity=0.432 Sum_probs=174.1
Q ss_pred eecCCCCCceEeecCCCeeEEEeecCceEEeccc--ccccccccc-CCCCEEEEEECCCCCeEEEEECCCcEEEEEeccC
Q psy9316 7 QFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQA-HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83 (264)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~-h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~ 83 (264)
.|+.....-..+.+.|.+ +.++..+|.+.+|+. .+.++++.+ |.+.|-+|+|+ +..+.+|+.|+.|..+|+...
T Consensus 214 ~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~ 290 (484)
T KOG0305|consen 214 SFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRIS 290 (484)
T ss_pred ecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecc
Confidence 343333344467777876 467899999999984 577888888 99999999998 888999999999999998765
Q ss_pred CCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc--------------------eEEEee--cCC
Q psy9316 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--------------------IMLASG--SFD 141 (264)
Q Consensus 84 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--------------------~~~~~~--~~d 141 (264)
..... .+.+|...|-.+.|++++ .++++|+.|+.+.+||....... .++|+| +.|
T Consensus 291 ~~~~~--~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D 367 (484)
T KOG0305|consen 291 QHVVS--TLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD 367 (484)
T ss_pred hhhhh--hhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence 43322 477899999999999854 89999999999999999543221 135554 578
Q ss_pred CcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEE-EeCCCcEEEEeCCCCcc--eeEeecCceEEEEEcCCC
Q psy9316 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST-ASGDKTVRIWDARTQKS--QIIATKGENINITWAPNG 218 (264)
Q Consensus 142 ~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s-~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~~sp~g 218 (264)
+.|++|+......+... .-.+-|..+.|++...+++.+ |..++.|.||+..+... .+..+...+..+++||||
T Consensus 368 ~~i~fwn~~~g~~i~~v----dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg 443 (484)
T KOG0305|consen 368 RCIKFWNTNTGARIDSV----DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDG 443 (484)
T ss_pred cEEEEEEcCCCcEeccc----ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCC
Confidence 99999997644333221 123569999999977677655 55688999999988664 334567789999999999
Q ss_pred CEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 219 NTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 219 ~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
..+++|+.|.+++||++-+...+.
T Consensus 444 ~~i~t~a~DETlrfw~~f~~~~~~ 467 (484)
T KOG0305|consen 444 ETIVTGAADETLRFWNLFDERPKS 467 (484)
T ss_pred CEEEEecccCcEEeccccCCCCcc
Confidence 999999999999999987654443
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=136.47 Aligned_cols=197 Identities=19% Similarity=0.328 Sum_probs=148.9
Q ss_pred cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCC--CCcccEEEecccccEEeEEEecC---CCCeEEEEe-
Q psy9316 43 DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG--DLNKEVVYRGHTGSVDQLCWHAT---NPDLLSTAS- 116 (264)
Q Consensus 43 ~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~--~~~~~~~~~~h~~~v~~i~~~~~---~~~~l~s~s- 116 (264)
..++-+.|++.|.|.+|+|+|++|++|+.|++|++.-++... .......+..|.+.|.+++|..+ ++.++++++
T Consensus 81 ~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 81 LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 345667899999999999999999999999999998776432 11222346789999999999632 335666665
Q ss_pred CCCcEEEEECCCCC------------------cceEEEeecCCCcEEEEEeccCCCccce-EEEec---cccceeeEEEc
Q psy9316 117 GDKTVRIWDARTQK------------------SQIMLASGSFDKSVAIFALDKKGDLNKE-VVYRG---HTGSVDQLCWH 174 (264)
Q Consensus 117 ~dg~i~vwd~~~~~------------------~~~~~~~~~~d~~i~i~~~~~~~~~~~~-~~~~~---h~~~i~~i~~~ 174 (264)
.|..|++=|-..++ +..++++|+.|.+|++||++.+...+.. ..+++ ..+.|.+++..
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vd 240 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVD 240 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEEC
Confidence 37777776765443 1236899999999999999876543321 11221 12468888988
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCcceeEee--cCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 175 ATNPDLLSTASGDKTVRIWDARTQKSQIIAT--KGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 175 ~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~--~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
|. +.++++|-.|.+.-+||++.+......+ ...+.++.|||..-||++++-|..|++-|+...+.
T Consensus 241 ps-grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla 307 (350)
T KOG0641|consen 241 PS-GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA 307 (350)
T ss_pred CC-cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchh
Confidence 85 5799999999999999999987543333 45688999999999999999999999999886554
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=167.65 Aligned_cols=218 Identities=26% Similarity=0.435 Sum_probs=156.0
Q ss_pred ceEeecCCCC-------CceEeecCCCeeEEEeecCceEEeccc--------------cccccccccCCCCEEEEEECCC
Q psy9316 4 PVIQFHTPKS-------PEYKLLPSGSQFHLVCKIDDYVKHFNT--------------HNDIKEYQAHGSKVHSVAWSCD 62 (264)
Q Consensus 4 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~~~~~~~--------------~~~~~~~~~h~~~V~~l~~s~~ 62 (264)
|...-|..++ |++..+++|+| ..|+-+.+|+. ++.+.+...|.+.|+|+.|+||
T Consensus 6 p~wv~H~~~~IfSIdv~pdg~~~aTgGq-----~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d 80 (942)
T KOG0973|consen 6 PTWVNHNEKSIFSIDVHPDGVKFATGGQ-----VLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD 80 (942)
T ss_pred ccccccCCeeEEEEEecCCceeEecCCc-----cccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC
Confidence 4555566665 77777777765 34555555543 2334456789999999999999
Q ss_pred CCeEEEEECCCcEEEEEeccC--C-------------CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECC
Q psy9316 63 GRRLASGSFDKSVAIFALDKK--G-------------DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 127 (264)
Q Consensus 63 g~~l~s~s~dg~i~v~~~~~~--~-------------~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~ 127 (264)
|++||+||.|..|.+|..... + ......++.+|.+.|.+++|+| ++.+++++|.|++|.+||.+
T Consensus 81 G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~ 159 (942)
T KOG0973|consen 81 GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAK 159 (942)
T ss_pred CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccc
Confidence 999999999999999987620 0 0112345789999999999999 45899999999999999998
Q ss_pred CCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc-eeEe--
Q psy9316 128 TQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIA-- 204 (264)
Q Consensus 128 ~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~-~~~~-- 204 (264)
+-+. ...+.+|++.|..+.|.|.+ .+|||-+.|++|+||+...-.. ....
T Consensus 160 tF~~--------------------------~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~p 212 (942)
T KOG0973|consen 160 TFEL--------------------------LKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKP 212 (942)
T ss_pred ccee--------------------------eeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccc
Confidence 6421 12467899999999999964 7999999999999999665321 1111
Q ss_pred -----ecCceEEEEEcCCCCEEEEeeC----CCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 205 -----TKGENINITWAPNGNTIAVGNK----EDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 205 -----~~~~~~~v~~sp~g~~la~gs~----d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
......+++|||||.+|++..+ -.++.|++- .-+.....+.||-+-+++|
T Consensus 213 f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR----~tWk~~~~LvGH~~p~evv 271 (942)
T KOG0973|consen 213 FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER----GTWKVDKDLVGHSAPVEVV 271 (942)
T ss_pred hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec----CCceeeeeeecCCCceEEE
Confidence 1123568999999999988742 334666652 2233334566777666554
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=153.72 Aligned_cols=215 Identities=24% Similarity=0.358 Sum_probs=165.0
Q ss_pred ecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec-ccccEEeEEEec
Q psy9316 30 KIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG-HTGSVDQLCWHA 106 (264)
Q Consensus 30 ~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~-h~~~v~~i~~~~ 106 (264)
+....+.+|+.. ........+...|+++.|+++|.+|+.|..+|.|.+||....... ..+.. |...|-+++|.
T Consensus 194 alg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~---~~~~~~h~~rvg~laW~- 269 (484)
T KOG0305|consen 194 ALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT---RTLRGSHASRVGSLAWN- 269 (484)
T ss_pred EecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc---ccccCCcCceeEEEecc-
Confidence 334456666543 222333334789999999999999999999999999998754332 33556 99999999996
Q ss_pred CCCCeEEEEeCCCcEEEEECCCCCc--------------------ceEEEeecCCCcEEEEEeccCCCccceEEEecccc
Q psy9316 107 TNPDLLSTASGDKTVRIWDARTQKS--------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166 (264)
Q Consensus 107 ~~~~~l~s~s~dg~i~vwd~~~~~~--------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~ 166 (264)
...+.+|+.|+.|..+|++..+. ...+++|+.|+.+.|||... ......+..|.+
T Consensus 270 --~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~---~~p~~~~~~H~a 344 (484)
T KOG0305|consen 270 --SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS---PEPKFTFTEHTA 344 (484)
T ss_pred --CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC---ccccEEEeccce
Confidence 46889999999999999987431 23689999999999999732 334457789999
Q ss_pred ceeeEEEcCCCCCEEEEEe--CCCcEEEEeCCCCcceeE-eecCceEEEEEcCCCCEEEE--eeCCCeEEEEEcccCCCC
Q psy9316 167 SVDQLCWHATNPDLLSTAS--GDKTVRIWDARTQKSQII-ATKGENINITWAPNGNTIAV--GNKEDLVTFIDVVKSLPP 241 (264)
Q Consensus 167 ~i~~i~~~~~~~~~i~s~~--~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~--gs~d~~i~~~d~~~~~~~ 241 (264)
.|.+++|+|....+||+|+ .|+.|++||..++..... .....|.++.|++..+.|++ |-.++.|.||+...
T Consensus 345 AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps---- 420 (484)
T KOG0305|consen 345 AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS---- 420 (484)
T ss_pred eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc----
Confidence 9999999999889999866 499999999998875333 34557899999999976644 56677899999754
Q ss_pred CCCcccCcccceeeee
Q psy9316 242 RERTLTSRGHLMETRS 257 (264)
Q Consensus 242 ~~~~~~~~~h~~~~~~ 257 (264)
-.....+.||..-|-.
T Consensus 421 ~~~~~~l~gH~~RVl~ 436 (484)
T KOG0305|consen 421 MKLVAELLGHTSRVLY 436 (484)
T ss_pred cceeeeecCCcceeEE
Confidence 3445567788766544
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-19 Score=150.99 Aligned_cols=215 Identities=24% Similarity=0.389 Sum_probs=165.8
Q ss_pred CeeEEEeecCceEEecccc-----ccc----------------c--ccccCCCCEEEEEECCC-CCeEEEEECCCcEEEE
Q psy9316 23 SQFHLVCKIDDYVKHFNTH-----NDI----------------K--EYQAHGSKVHSVAWSCD-GRRLASGSFDKSVAIF 78 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~~-----~~~----------------~--~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~v~ 78 (264)
+++..++..|-.|.+|+.. ... + .-.+|++.|.+|.|+.. .+.|++||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 4567788888888888641 000 0 12368999999999975 4678899999999999
Q ss_pred EeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC--------------------cceEEEee
Q psy9316 79 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--------------------SQIMLASG 138 (264)
Q Consensus 79 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~--------------------~~~~~~~~ 138 (264)
|+++. +. ..++..|...|.++.|+|..+..+++||.|++|.+.|.|... ....+.++
T Consensus 272 D~~~g-~p--~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 272 DVDTG-KP--KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EcCCC-Cc--ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 99863 32 234567899999999999999999999999999999998321 12357888
Q ss_pred cCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE----eecCceEEEEE
Q psy9316 139 SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII----ATKGENINITW 214 (264)
Q Consensus 139 ~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~----~~~~~~~~v~~ 214 (264)
..||.++-+|++..+ ....+...|.++|..|++++..+.++++++.|+++++|++..-..... ...+...+.++
T Consensus 349 tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~ 426 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFAL 426 (463)
T ss_pred cCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeeccc
Confidence 999999999998765 334577899999999999998889999999999999999876543221 12234556677
Q ss_pred cCCCC-EEEEeeCCCeEEEEEcccCCCCC
Q psy9316 215 APNGN-TIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 215 sp~g~-~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
.|+-- .||+|+..+.+++||+-...+.+
T Consensus 427 ~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 427 DPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred CCCcceEEEecCccceEEEeecccChhHH
Confidence 77654 66888888899999987755543
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=141.87 Aligned_cols=223 Identities=15% Similarity=0.260 Sum_probs=157.0
Q ss_pred ceEeecCCCCCceEeecCCCeeEEEeecCceEEecccccc--ccccccCCCCEEEEEECCCCC--eEEEEECCCcEEEEE
Q psy9316 4 PVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHND--IKEYQAHGSKVHSVAWSCDGR--RLASGSFDKSVAIFA 79 (264)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~h~~~V~~l~~s~~g~--~l~s~s~dg~i~v~~ 79 (264)
|...|.-+..+-.. +|+.+.+..+++.|..|++|++.+. +-.+-.|.+.|+++.|.++-. .|++|+.||.|.+|+
T Consensus 35 ~lF~~~aH~~sita-vAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 35 PLFAFSAHAGSITA-LAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccccccccceeE-EEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 44445444444333 5566678888999999999988654 456778999999999998765 899999999999998
Q ss_pred eccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceE--------EEeecCC---------C
Q psy9316 80 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIM--------LASGSFD---------K 142 (264)
Q Consensus 80 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--------~~~~~~d---------~ 142 (264)
.. .......+++|.+.|+.++.||.+ .+.++.+.|+.+++||+-.++.... ++.-+.. .
T Consensus 114 ~~---~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 114 VG---SWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred cC---CeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence 64 344455688999999999999965 7888999999999999866543211 1111111 1
Q ss_pred cEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEEEE--cCCC
Q psy9316 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENINITW--APNG 218 (264)
Q Consensus 143 ~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~~--sp~g 218 (264)
.|-||.+..-.-+. ......++.++.| .+...+++|+.|+.|.+||-.+... .+..+..++-++.+ .|++
T Consensus 190 ~i~i~q~d~A~v~~----~i~~~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 190 KIDIYQLDNASVFR----EIENPKRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred EEEEEecccHhHhh----hhhccccceeeee--cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence 23444432211100 0111233444544 4567888999999999999997654 34456677766663 6789
Q ss_pred CEEEEeeCCCeEEEEEccc
Q psy9316 219 NTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 219 ~~la~gs~d~~i~~~d~~~ 237 (264)
.||+++|.||.|++||++-
T Consensus 264 ~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred eEEEEeccCceEEEEEccc
Confidence 9999999999999999763
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=150.07 Aligned_cols=207 Identities=15% Similarity=0.222 Sum_probs=158.1
Q ss_pred EEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCC------------------
Q psy9316 26 HLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD------------------ 85 (264)
Q Consensus 26 ~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~------------------ 85 (264)
..+++.||.+++|++ .+++.+|+.|.+.|..|+++. ..++++|+|++|+.|.++.+..
T Consensus 82 ~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~ 159 (433)
T KOG0268|consen 82 VASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKN 159 (433)
T ss_pred hhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccccc
Confidence 346788999999986 567889999999999999986 7888999999999998543100
Q ss_pred ------CcccEEEe-----------cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc----------------
Q psy9316 86 ------LNKEVVYR-----------GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ---------------- 132 (264)
Q Consensus 86 ------~~~~~~~~-----------~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---------------- 132 (264)
.....+++ --...+.++.|+|....+|+++..|+.|.+||++.....
T Consensus 160 ~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP 239 (433)
T KOG0268|consen 160 SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP 239 (433)
T ss_pred ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc
Confidence 00011111 113456777888877789999999999999999875421
Q ss_pred --eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee---cC
Q psy9316 133 --IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT---KG 207 (264)
Q Consensus 133 --~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~---~~ 207 (264)
-.+++|+.|..+..||++.-.. ......+|.+.|..+.|+|.+. -|+||+-|.+|+||..+.+...-.-+ -+
T Consensus 240 eafnF~~a~ED~nlY~~DmR~l~~--p~~v~~dhvsAV~dVdfsptG~-EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq 316 (433)
T KOG0268|consen 240 EAFNFVAANEDHNLYTYDMRNLSR--PLNVHKDHVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQ 316 (433)
T ss_pred cccceeeccccccceehhhhhhcc--cchhhcccceeEEEeccCCCcc-hhccccccceEEEeecCCCcchhhhhHhhhh
Confidence 2478899999999999864221 1224578889999999999764 56799999999999988665321112 24
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 208 ENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 208 ~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.+.+|.||-|.+|+++||+|+-|++|..++
T Consensus 317 ~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 317 HVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred eeeEEEEeccccEEEecCCCcceeeeecch
Confidence 689999999999999999999999999765
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-19 Score=159.06 Aligned_cols=218 Identities=26% Similarity=0.350 Sum_probs=165.6
Q ss_pred cCCCCCceEeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCC
Q psy9316 9 HTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDL 86 (264)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~ 86 (264)
|.-...-.+ +|.++.++++++.|..+++|+. +.+++.+.+|.+.|.++... +.++++|+.|.+|++|++..+. .
T Consensus 248 H~g~V~~l~-~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~-~ 323 (537)
T KOG0274|consen 248 HFGGVWGLA-FPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGA-C 323 (537)
T ss_pred CCCCceeEE-EecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcc-e
Confidence 333334434 4446677889999999999975 57889999999999998874 6678889999999999997432 2
Q ss_pred cccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-----------------c-eEEEeecCCCcEEEEE
Q psy9316 87 NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-----------------Q-IMLASGSFDKSVAIFA 148 (264)
Q Consensus 87 ~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-----------------~-~~~~~~~~d~~i~i~~ 148 (264)
..++.+|.++|.++..+ ..++++|+.||+|++||+.+.+. . ..+.+|+.|+.|++||
T Consensus 324 --l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWd 398 (537)
T KOG0274|consen 324 --LNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWD 398 (537)
T ss_pred --EEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeec
Confidence 23466799999999885 46899999999999999986542 1 3567889999999999
Q ss_pred eccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe-e--cCceEEEEEcCCCCEEEEee
Q psy9316 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA-T--KGENINITWAPNGNTIAVGN 225 (264)
Q Consensus 149 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~-~--~~~~~~v~~sp~g~~la~gs 225 (264)
++... ....++.+|..-+..+.+ ...++++++.||+|++||.+++++.... . ...+..+++. ...+++++
T Consensus 399 l~~~~--~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~ 471 (537)
T KOG0274|consen 399 LRTKR--KCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSS 471 (537)
T ss_pred CCchh--hhhhhhcCCccccccccc---ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEe
Confidence 87541 222356778888876654 3468899999999999999998863322 2 2344445444 57889999
Q ss_pred CCCeEEEEEcccCCCCC
Q psy9316 226 KEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 226 ~d~~i~~~d~~~~~~~~ 242 (264)
.|+.+++||++.+...+
T Consensus 472 ~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 472 DDGSVKLWDLRSGTLIR 488 (537)
T ss_pred cCCeeEEEecccCchhh
Confidence 99999999998766655
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-19 Score=150.76 Aligned_cols=189 Identities=19% Similarity=0.308 Sum_probs=147.7
Q ss_pred ccccCCCCEEEEEECCCC--CeEEEEECCCcEEEEEeccCCC-CcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEE
Q psy9316 46 EYQAHGSKVHSVAWSCDG--RRLASGSFDKSVAIFALDKKGD-LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~~g--~~l~s~s~dg~i~v~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~ 122 (264)
.+.-+.+.|.+++|+|-. +.+++|...|.|-+||+...+. ......+..|.++|.++.|+|.+...+++.|.||+|+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 345678899999999943 5788888999999999953222 2233456789999999999999988999999999999
Q ss_pred EEECCCCCc---------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEE
Q psy9316 123 IWDARTQKS---------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLL 181 (264)
Q Consensus 123 vwd~~~~~~---------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i 181 (264)
+=|++.... ...++.+..-|...+||++.++.... ..+-|...|..++++|..+.+|
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~--~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE--NLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch--hhhhhhcccceeecCCCCchhe
Confidence 999876421 11344455556888999988765322 3456788999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCcce----e--EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 182 STASGDKTVRIWDARTQKSQ----I--IATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 182 ~s~~~dg~i~iwD~~t~~~~----~--~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
+|++.|++.+|||++.-... + ..+...+.++.|||.|-.|++-+.|..|+|||..
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 99999999999999864321 1 2234457788999988889999999999999984
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=147.20 Aligned_cols=208 Identities=18% Similarity=0.255 Sum_probs=150.9
Q ss_pred cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEE
Q psy9316 43 DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122 (264)
Q Consensus 43 ~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~ 122 (264)
.++++-.|.+.|++|.|+|....|++|+.|++|++||+.+....+...++ ....+|.++.|+|.+ .+++.|..--+++
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsG-efllvgTdHp~~r 241 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSG-EFLLVGTDHPTLR 241 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCC-ceEEEecCCCcee
Confidence 46778889999999999999999999999999999998754322111112 235679999999966 6888899999999
Q ss_pred EEECCCCCc----------------------ceEEEeecCCCcEEEEEeccCCCccceEEEecccc-ceeeEEEcCCCCC
Q psy9316 123 IWDARTQKS----------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG-SVDQLCWHATNPD 179 (264)
Q Consensus 123 vwd~~~~~~----------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~-~i~~i~~~~~~~~ 179 (264)
+||+++-++ ..+.++++.||-|+|||--.+.++... -..|.+ .|.+..|.. ++.
T Consensus 242 lYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~--~~AH~gsevcSa~Ftk-n~k 318 (430)
T KOG0640|consen 242 LYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTI--GNAHGGSEVCSAVFTK-NGK 318 (430)
T ss_pred EEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHH--HhhcCCceeeeEEEcc-CCe
Confidence 999987432 236789999999999986444433321 234544 578888875 567
Q ss_pred EEEEEeCCCcEEEEeCCCCcceeEeecC-------ceEEEEEcCCCCEEEE-eeCCCeEEEEEcccCCCCCCCcccCccc
Q psy9316 180 LLSTASGDKTVRIWDARTQKSQIIATKG-------ENINITWAPNGNTIAV-GNKEDLVTFIDVVKSLPPRERTLTSRGH 251 (264)
Q Consensus 180 ~i~s~~~dg~i~iwD~~t~~~~~~~~~~-------~~~~v~~sp~g~~la~-gs~d~~i~~~d~~~~~~~~~~~~~~~~h 251 (264)
+|+|.+.|..+++|.+.++.....-... .-....|+....|++. -...+.++-||.++.-. +..-+.||
T Consensus 319 yiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr---~~l~slgH 395 (430)
T KOG0640|consen 319 YILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR---VALLSLGH 395 (430)
T ss_pred EEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh---hhhcccCC
Confidence 8889999999999999998753322111 1233557776666644 35667789999775322 23346799
Q ss_pred ceeeeee
Q psy9316 252 LMETRSL 258 (264)
Q Consensus 252 ~~~~~~~ 258 (264)
+..+||.
T Consensus 396 n~a~R~i 402 (430)
T KOG0640|consen 396 NGAVRWI 402 (430)
T ss_pred CCCceEE
Confidence 9999985
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=156.09 Aligned_cols=215 Identities=20% Similarity=0.309 Sum_probs=168.2
Q ss_pred EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccC----CCCcccE
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK----GDLNKEV 90 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~----~~~~~~~ 90 (264)
.|.|.+. ..+++.-.|-+..|+. ...+++.+.|.+.|..++.+||++.+++||.|.+|++|++... +...+..
T Consensus 419 ~Fvpgd~-~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~l 497 (888)
T KOG0306|consen 419 KFVPGDR-YIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVL 497 (888)
T ss_pred EecCCCc-eEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceee
Confidence 4455554 4566777887777754 4677888899999999999999999999999999999997632 1111111
Q ss_pred EE-----ecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEE
Q psy9316 91 VY-----RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAI 146 (264)
Q Consensus 91 ~~-----~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i 146 (264)
.+ -.-...|.++.++|++ .+++.+=-|.++++|=+++-+- ..++++|+.|.++++
T Consensus 498 sl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKi 576 (888)
T KOG0306|consen 498 SLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKI 576 (888)
T ss_pred eeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEE
Confidence 11 1235679999999955 7888888899999998876431 126899999999999
Q ss_pred EEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEEEEcCCCCEEEEe
Q psy9316 147 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENINITWAPNGNTIAVG 224 (264)
Q Consensus 147 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~~sp~g~~la~g 224 (264)
|.++-+.+. ..+.+|.+.|+++.|.| ...++.|++.|+.|+-||.+..+. ....+...+.+++.+|+|.+++++
T Consensus 577 WGLdFGDCH---KS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~ 652 (888)
T KOG0306|consen 577 WGLDFGDCH---KSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSS 652 (888)
T ss_pred eccccchhh---hhhhcccCceeEEEEcc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEec
Confidence 998755432 24678999999999999 456788999999999999998774 334556779999999999999999
Q ss_pred eCCCeEEEEEccc
Q psy9316 225 NKEDLVTFIDVVK 237 (264)
Q Consensus 225 s~d~~i~~~d~~~ 237 (264)
|.|..|++|.-.+
T Consensus 653 shD~sIRlwE~td 665 (888)
T KOG0306|consen 653 SHDKSIRLWERTD 665 (888)
T ss_pred cCCceeEeeeccC
Confidence 9999999998554
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=143.72 Aligned_cols=226 Identities=22% Similarity=0.299 Sum_probs=170.3
Q ss_pred eecCCCCCceEeecCCCeeEEEeecCceEEecc--cccc---c-----cccccCCCCEEEEEECCCCCeEEEEECCCcEE
Q psy9316 7 QFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFN--THND---I-----KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVA 76 (264)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~---~-----~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~ 76 (264)
-|.+..-+.+..+.-+++++++++.||+|..|+ +++. + ..|..+..+|.|+.|+.|..-|++|+.||.|+
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 344444455544444447788888899998875 3322 1 24667889999999999999999999999999
Q ss_pred EEEeccCCCCcccEEEe-cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-------------------eEEE
Q psy9316 77 IFALDKKGDLNKEVVYR-GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-------------------IMLA 136 (264)
Q Consensus 77 v~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------------~~~~ 136 (264)
+|.+.+..... .++ +|+..|+++.|+.++ ..+++++-|-++++-.+++++.. ..++
T Consensus 289 vWri~tG~ClR---rFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii 364 (508)
T KOG0275|consen 289 VWRIETGQCLR---RFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII 364 (508)
T ss_pred EEEEecchHHH---HhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEE
Confidence 99987643222 243 899999999999866 45668999999999999887631 2578
Q ss_pred eecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee----cCceEEE
Q psy9316 137 SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT----KGENINI 212 (264)
Q Consensus 137 ~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~----~~~~~~v 212 (264)
+++.||++++|+.....++..... .+...+|+.+..-|.++..++.+...++++|.++..+....... .+.-.+.
T Consensus 365 saSsDgtvkvW~~KtteC~~Tfk~-~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~ 443 (508)
T KOG0275|consen 365 SASSDGTVKVWHGKTTECLSTFKP-LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINA 443 (508)
T ss_pred EecCCccEEEecCcchhhhhhccC-CCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEE
Confidence 999999999999876544332211 23345788888889888888888999999999998765322221 2335678
Q ss_pred EEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 213 TWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 213 ~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
..||.|.++.+.+.|++++-|.+..
T Consensus 444 ~lSpkGewiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 444 ILSPKGEWIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred EecCCCcEEEEEccCcEEEEEEeec
Confidence 8999999999999999999998765
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-18 Score=145.76 Aligned_cols=183 Identities=23% Similarity=0.450 Sum_probs=147.0
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCC
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~ 128 (264)
.|...+.+++.++||++|++|+.|..|.||+.+... ....+.+|.+.|.+++|-. +.+.+.++|.|..+++|+++.
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e---hv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE---HVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccc---hhhcccccccceeeeeeec-CccceeeeecCCceEEEehhH
Confidence 788899999999999999999999999999987533 3345789999999999964 557788999999999999864
Q ss_pred CCc-------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCc
Q psy9316 129 QKS-------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 189 (264)
Q Consensus 129 ~~~-------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~ 189 (264)
... ...+-.|+-|+++++|.+... ....+++|.+.+.+++|- +.+.|+||+.+|.
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee----sqlifrg~~~sidcv~~I--n~~HfvsGSdnG~ 349 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE----SQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGS 349 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc----ceeeeeCCCCCeeeEEEe--cccceeeccCCce
Confidence 211 123455679999999998432 234688998999999996 4568899999999
Q ss_pred EEEEeCCCCcceeE---ee---cC--------ceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCC
Q psy9316 190 VRIWDARTQKSQII---AT---KG--------ENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPP 241 (264)
Q Consensus 190 i~iwD~~t~~~~~~---~~---~~--------~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~ 241 (264)
|.+|++-.++.... .+ +. -+++++..|..+.+|+||-+|.|++|.+.++..+
T Consensus 350 IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 350 IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred EEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence 99999988774322 11 11 3567889999999999999999999999987443
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-18 Score=135.47 Aligned_cols=245 Identities=16% Similarity=0.265 Sum_probs=173.3
Q ss_pred ceEeecCCCCCce--EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEE
Q psy9316 4 PVIQFHTPKSPEY--KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFA 79 (264)
Q Consensus 4 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~ 79 (264)
|+++-. ++.|-. ++.--| .++.+|+.|.....|-. ++.+=+|.+|.+.|+|+..+.+.+.+++|+.|.++++||
T Consensus 3 pi~l~G-HERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 3 PILLQG-HERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred cccccc-CccccceEEecCCC-cEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 544433 444444 333344 57788999998877754 678889999999999999999999999999999999999
Q ss_pred eccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeC-----CCcEEEEECCCCC------c-----------------
Q psy9316 80 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG-----DKTVRIWDARTQK------S----------------- 131 (264)
Q Consensus 80 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~-----dg~i~vwd~~~~~------~----------------- 131 (264)
+..... ...+ .-..+|..+.|++.+ ++++.+.. .+.|.++|++... .
T Consensus 81 v~tGk~---la~~-k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W 155 (327)
T KOG0643|consen 81 VETGKQ---LATW-KTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW 155 (327)
T ss_pred cCCCcE---EEEe-ecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence 976332 1223 346779999999855 55554443 3568899987321 0
Q ss_pred ---ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-EeecC
Q psy9316 132 ---QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATKG 207 (264)
Q Consensus 132 ---~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~~ 207 (264)
...+++|..||+|.+||.+.+..... ....|...|+.++++++ ..++++++.|.+-++||+++-+++. .....
T Consensus 156 g~l~~~ii~Ghe~G~is~~da~~g~~~v~--s~~~h~~~Ind~q~s~d-~T~FiT~s~Dttakl~D~~tl~v~Kty~te~ 232 (327)
T KOG0643|consen 156 GPLGETIIAGHEDGSISIYDARTGKELVD--SDEEHSSKINDLQFSRD-RTYFITGSKDTTAKLVDVRTLEVLKTYTTER 232 (327)
T ss_pred cccCCEEEEecCCCcEEEEEcccCceeee--chhhhccccccccccCC-cceEEecccCccceeeeccceeeEEEeeecc
Confidence 12478899999999999876433221 23457889999999985 5688999999999999999987643 34456
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCC----------CCCcccCcccceeeeee
Q psy9316 208 ENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPP----------RERTLTSRGHLMETRSL 258 (264)
Q Consensus 208 ~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~----------~~~~~~~~~h~~~~~~~ 258 (264)
++++.+++|..++++.|+...-.-+-.......+ .|+.++.+||-.-+-+|
T Consensus 233 PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsv 293 (327)
T KOG0643|consen 233 PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSV 293 (327)
T ss_pred cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCccee
Confidence 7888999998888877765544333332222221 24666778887665554
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=144.87 Aligned_cols=227 Identities=24% Similarity=0.395 Sum_probs=163.5
Q ss_pred ceEeecCCCeeEEEeecCce-----EEeccccccccccccCC----CCEEEEEECC-------CCCeEEEEECCCcEEEE
Q psy9316 15 EYKLLPSGSQFHLVCKIDDY-----VKHFNTHNDIKEYQAHG----SKVHSVAWSC-------DGRRLASGSFDKSVAIF 78 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~-----~~~~~~~~~~~~~~~h~----~~V~~l~~s~-------~g~~l~s~s~dg~i~v~ 78 (264)
+.++.|+++ +.+.+..+.. ++.|+..+ .-.|..|. ..-.|+.|.. .|+++|.|..|-.|.||
T Consensus 130 e~~V~psDn-lIl~ar~eddvs~LEvYVyn~~e-~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW 207 (463)
T KOG0270|consen 130 EEQVKPSDN-LILCARNEDDVSYLEVYVYNEEE-ENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW 207 (463)
T ss_pred cceeccCCc-EEEEeeccCCceEEEEEEEcCCC-cceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence 456777775 4444444432 23333322 11233332 2345666642 36799999999999999
Q ss_pred EeccCCCCcccEE------------------EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc--------
Q psy9316 79 ALDKKGDLNKEVV------------------YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-------- 132 (264)
Q Consensus 79 ~~~~~~~~~~~~~------------------~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------- 132 (264)
|++......+..+ -.+|+..|..+.|...-.++|+|||.|.+|++||+.+++..
T Consensus 208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k 287 (463)
T KOG0270|consen 208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGK 287 (463)
T ss_pred ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCC
Confidence 9875322211111 23688899999998766789999999999999999987532
Q ss_pred ------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc-
Q psy9316 133 ------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK- 199 (264)
Q Consensus 133 ------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~- 199 (264)
..+++|++|+++.+.|++..++......+ .+.|..+.|+|.....++++..||.++-+|+|+..
T Consensus 288 ~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~ 364 (463)
T KOG0270|consen 288 KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK 364 (463)
T ss_pred ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe---ccceEEEEecCCCceeEEEecCCceEEeeecCCCCC
Confidence 35789999999999999864444444433 35789999999888888899999999999999864
Q ss_pred c--eeEeecCceEEEEEcCCC-CEEEEeeCCCeEEEEEcccCCCCCCCcc
Q psy9316 200 S--QIIATKGENINITWAPNG-NTIAVGNKEDLVTFIDVVKSLPPRERTL 246 (264)
Q Consensus 200 ~--~~~~~~~~~~~v~~sp~g-~~la~gs~d~~i~~~d~~~~~~~~~~~~ 246 (264)
. ..+++.+.+.++++++.- ..|++++.|+++.+|++....+..++..
T Consensus 365 ~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~ 414 (463)
T KOG0270|consen 365 PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH 414 (463)
T ss_pred ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc
Confidence 2 456788889999998755 4679999999999999987666554443
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.8e-18 Score=136.67 Aligned_cols=225 Identities=17% Similarity=0.320 Sum_probs=163.1
Q ss_pred EeecCCCCCce-EeecCC--CeeEEEeecCceEEecccccc-----c------cccccCCCCEEEEEECC-CCCeEEEEE
Q psy9316 6 IQFHTPKSPEY-KLLPSG--SQFHLVCKIDDYVKHFNTHND-----I------KEYQAHGSKVHSVAWSC-DGRRLASGS 70 (264)
Q Consensus 6 ~~~~~~~~~~~-~~~~~~--~~~~~~~~~d~~~~~~~~~~~-----~------~~~~~h~~~V~~l~~s~-~g~~l~s~s 70 (264)
-+|.+|+++++ +++|.. .-=++.+....++++|+.... + ..-..+.+++++..|+. |.++|.++|
T Consensus 91 a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 91 ANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 35899999887 888864 222456777888999976521 0 11235667899999997 889999999
Q ss_pred CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce-----------------
Q psy9316 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI----------------- 133 (264)
Q Consensus 71 ~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----------------- 133 (264)
-|.+..|||++.....-....+-+|...|.+++|...+.+.|+|.+.||.+|++|++..+-..
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 999999999986311101123458999999999998777899999999999999998743211
Q ss_pred ------EEEee-cCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc------
Q psy9316 134 ------MLASG-SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS------ 200 (264)
Q Consensus 134 ------~~~~~-~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~------ 200 (264)
++++- -....|.|.|++.. ......+++|.+.|+.|+|.|.....|.|++.|...-+||+.....
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P--~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVP--CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCC--CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 12221 12345667777643 2233456899999999999999999999999999999999976432
Q ss_pred -eeEeecCceEEEEEcC-CCCEEEEeeCCCeEEEE
Q psy9316 201 -QIIATKGENINITWAP-NGNTIAVGNKEDLVTFI 233 (264)
Q Consensus 201 -~~~~~~~~~~~v~~sp-~g~~la~gs~d~~i~~~ 233 (264)
......++++.+.|+| ..++++++. +..+.+.
T Consensus 329 ilay~a~~EVNqi~Ws~~~~Dwiai~~-~kkleiL 362 (364)
T KOG0290|consen 329 ILAYTAGGEVNQIQWSSSQPDWIAICF-GKKLEIL 362 (364)
T ss_pred hhhhhccceeeeeeecccCCCEEEEEe-cCeeeEE
Confidence 1122346789999995 678888887 4444544
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=154.17 Aligned_cols=200 Identities=18% Similarity=0.302 Sum_probs=150.0
Q ss_pred cCCCCEE---EEEECC-CCCeEEEEECCCcEEEEEeccCCCC---cccEEEecccccEEeEEEecCCCCeEEEEeCCCcE
Q psy9316 49 AHGSKVH---SVAWSC-DGRRLASGSFDKSVAIFALDKKGDL---NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 121 (264)
Q Consensus 49 ~h~~~V~---~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i 121 (264)
.|...|. .++.++ .+++|++||.||.|++|++...... .....++.|.+.|.++...- .++.++|+|.|-+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDTTV 97 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCceE
Confidence 4555555 566664 6677999999999999998764431 11234678999998887654 34578899999999
Q ss_pred EEEECCCCC----------------------cceEEEeecCCCcEEEEEeccCCC-------ccceE-EEeccccceeeE
Q psy9316 122 RIWDARTQK----------------------SQIMLASGSFDKSVAIFALDKKGD-------LNKEV-VYRGHTGSVDQL 171 (264)
Q Consensus 122 ~vwd~~~~~----------------------~~~~~~~~~~d~~i~i~~~~~~~~-------~~~~~-~~~~h~~~i~~i 171 (264)
++|+..... ...++++|+.|+.|.+||++.... ..... ...++..+|+++
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 999987652 123678999999999999985422 11111 123788899999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCc
Q psy9316 172 CWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSR 249 (264)
Q Consensus 172 ~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~ 249 (264)
+-++. +.+|++|+..+-+++||.++.+. .+..+..-+-.+-.++||+.++++|.||+|++||+.--++ ..++.
T Consensus 178 A~N~t-~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC----l~T~~ 252 (735)
T KOG0308|consen 178 AMNQT-GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC----LATYI 252 (735)
T ss_pred ecCCc-ceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccce----eeeEE
Confidence 98874 47899999999999999999875 3345566677888999999999999999999999864444 45677
Q ss_pred cccee
Q psy9316 250 GHLME 254 (264)
Q Consensus 250 ~h~~~ 254 (264)
.|..-
T Consensus 253 vH~e~ 257 (735)
T KOG0308|consen 253 VHKEG 257 (735)
T ss_pred eccCc
Confidence 77554
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-18 Score=136.94 Aligned_cols=172 Identities=20% Similarity=0.260 Sum_probs=132.2
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCC
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~ 128 (264)
...+.|..+.|+|.+..|+.+++||++++|++.... .. ..-.|.+++.+++|.+ ...+++|+.||.|+++|+++
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~-l~---~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS-LK---LKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh-hh---hheecCCceeeeeccC--CceEEEeccCceEEEEEecC
Confidence 446789999999999999999999999999987541 21 2225889999999974 45788999999999999987
Q ss_pred CCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-EeecC
Q psy9316 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATKG 207 (264)
Q Consensus 129 ~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~~ 207 (264)
+... ....|..+|.+|.+.+.. ..+++|++|++|++||.+...... .....
T Consensus 85 ~~~~---------------------------~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k 136 (323)
T KOG1036|consen 85 GNED---------------------------QIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFDQGK 136 (323)
T ss_pred Ccce---------------------------eeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccccCc
Confidence 6532 234578899999998644 567899999999999999754322 12223
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 208 ENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 208 ~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
.+.++ +-.|+.|++|++|..+.+||+++...+.|+..+.. ..++|||
T Consensus 137 kVy~~--~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l--kyqtR~v 183 (323)
T KOG1036|consen 137 KVYCM--DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL--KYQTRCV 183 (323)
T ss_pred eEEEE--eccCCEEEEeecCceEEEEEcccccchhhhccccc--eeEEEEE
Confidence 44444 45699999999999999999999888877665432 3677775
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-19 Score=146.05 Aligned_cols=204 Identities=20% Similarity=0.336 Sum_probs=149.9
Q ss_pred CeeEEEeecCceEEeccc--cccccccc-cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccE
Q psy9316 23 SQFHLVCKIDDYVKHFNT--HNDIKEYQ-AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV 99 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~--~~~~~~~~-~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v 99 (264)
+.+..+++.||.||.|+. +.++++|. .|...|+|+.|+.|+..|++++.|.++++-.+.. ++.- ..+++|.+.|
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK~L--KEfrGHsSyv 351 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-GKCL--KEFRGHSSYV 351 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-chhH--HHhcCccccc
Confidence 333444555999999964 66788887 8999999999999999999999999999988754 3322 2378999999
Q ss_pred EeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce----------------------EEEeecCCCcEEEEEeccCCCccc
Q psy9316 100 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI----------------------MLASGSFDKSVAIFALDKKGDLNK 157 (264)
Q Consensus 100 ~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----------------------~~~~~~~d~~i~i~~~~~~~~~~~ 157 (264)
....|.+++ +.++++|.||+|++|+.++.++.. .++.+....++.|..+ .+...+
T Consensus 352 n~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~--qGQvVr 428 (508)
T KOG0275|consen 352 NEATFTDDG-HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM--QGQVVR 428 (508)
T ss_pred cceEEcCCC-CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec--cceEEe
Confidence 999998754 778899999999999998754322 3444444444444433 333222
Q ss_pred eEEEecc--ccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce--eEeecCceEEEEEcCCCCEEEEeeCCCeEEEE
Q psy9316 158 EVVYRGH--TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--IIATKGENINITWAPNGNTIAVGNKEDLVTFI 233 (264)
Q Consensus 158 ~~~~~~h--~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~--~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~ 233 (264)
.+. .+. .+..-+.+.+| .++++.+.++|+.++-|...++... ...+...+..++-.|..+.+|+.+.|+.+++|
T Consensus 429 sfs-SGkREgGdFi~~~lSp-kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 429 SFS-SGKREGGDFINAILSP-KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLW 506 (508)
T ss_pred eec-cCCccCCceEEEEecC-CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhc
Confidence 111 111 12233445666 5688899999999999999888742 23445567888999999999999999999999
Q ss_pred E
Q psy9316 234 D 234 (264)
Q Consensus 234 d 234 (264)
.
T Consensus 507 k 507 (508)
T KOG0275|consen 507 K 507 (508)
T ss_pred C
Confidence 5
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.5e-18 Score=143.49 Aligned_cols=216 Identities=21% Similarity=0.279 Sum_probs=156.1
Q ss_pred eeEEEeecCceEEecc--ccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccC------CCCcccEEEecc
Q psy9316 24 QFHLVCKIDDYVKHFN--THNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK------GDLNKEVVYRGH 95 (264)
Q Consensus 24 ~~~~~~~~d~~~~~~~--~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~------~~~~~~~~~~~h 95 (264)
.+.+.+...+.+++|. ++..+..+..|-..|+||.|+-||..|++||.||.|.+|.+..- ........+..|
T Consensus 94 ~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H 173 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH 173 (476)
T ss_pred eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC
Confidence 4544444788887775 46778888999999999999999999999999999999986531 122334567899
Q ss_pred cccEEeEEEecCC-CCeEEEEeCCCcEEEEECCCCCcc------------------eEEEeecCCCcEEEEEeccCC-C-
Q psy9316 96 TGSVDQLCWHATN-PDLLSTASGDKTVRIWDARTQKSQ------------------IMLASGSFDKSVAIFALDKKG-D- 154 (264)
Q Consensus 96 ~~~v~~i~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~------------------~~~~~~~~d~~i~i~~~~~~~-~- 154 (264)
+-+|+++...+.+ ..+++++|.|.++|+||+..+... ..+.+|+.+|.|.+..+..-. .
T Consensus 174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~ 253 (476)
T KOG0646|consen 174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS 253 (476)
T ss_pred cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc
Confidence 9999999887642 348889999999999999876422 246788899998876653211 0
Q ss_pred -----------ccceEEEecccc--ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-Ee-ecCceEEEEEcCCCC
Q psy9316 155 -----------LNKEVVYRGHTG--SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IA-TKGENINITWAPNGN 219 (264)
Q Consensus 155 -----------~~~~~~~~~h~~--~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~-~~~~~~~v~~sp~g~ 219 (264)
..+...+.+|.. .|++++.+- ++.++++|+.||.++|||+.++++.. .. ..+.++.+.+.|--+
T Consensus 254 ~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 254 AGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred ccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 112234678887 899999985 67899999999999999999998632 23 567788888866443
Q ss_pred EEEE-eeCCCeEEEEEcccCCC
Q psy9316 220 TIAV-GNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 220 ~la~-gs~d~~i~~~d~~~~~~ 240 (264)
.... -.....+.+|+...+.+
T Consensus 333 ~~~l~~~~~ps~~~~~lkr~i~ 354 (476)
T KOG0646|consen 333 GIILFEHKQPSLPNPHLKRMIP 354 (476)
T ss_pred ceecccccCccCCchHhhccCC
Confidence 3333 23334445555444333
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-18 Score=144.23 Aligned_cols=211 Identities=22% Similarity=0.290 Sum_probs=153.8
Q ss_pred CCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccE
Q psy9316 22 GSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV 99 (264)
Q Consensus 22 ~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v 99 (264)
++.+++++..|..+.+|+. .+.++.|.+|.+.|.+|+|-.....+++++.|.++++|+++.... ..++.+|.+.|
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~---vetlyGHqd~v 289 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY---VETLYGHQDGV 289 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH---HHHHhCCccce
Confidence 3456667777888878764 567888999999999999988889999999999999999875332 23466899999
Q ss_pred EeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-----------------ceEEEeecCCCcEEEEEeccCCCccceEE--
Q psy9316 100 DQLCWHATNPDLLSTASGDKTVRIWDARTQKS-----------------QIMLASGSFDKSVAIFALDKKGDLNKEVV-- 160 (264)
Q Consensus 100 ~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-----------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~-- 160 (264)
.++.... ..+.+.+|++|.++++|++..... ...+++|+.+|+|.+|++-....+.....
T Consensus 290 ~~IdaL~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 290 LGIDALS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred eeechhc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccc
Confidence 9997664 335666677999999999843211 12589999999999999865443221100
Q ss_pred -------EeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce--e---EeecCceEEEEEcCCCCEEEEe-eCC
Q psy9316 161 -------YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--I---IATKGENINITWAPNGNTIAVG-NKE 227 (264)
Q Consensus 161 -------~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~--~---~~~~~~~~~v~~sp~g~~la~g-s~d 227 (264)
..++...|++++..| +.+++++|+.+|.|++|-++.+-.+ . ....+.+++++|+++|+.+++| ++.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred cccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccc
Confidence 012233688888887 5689999999999999988877321 1 1235678899999999966554 555
Q ss_pred CeEEEEEccc
Q psy9316 228 DLVTFIDVVK 237 (264)
Q Consensus 228 ~~i~~~d~~~ 237 (264)
..+=-|.+.+
T Consensus 448 hRlGRW~~~k 457 (479)
T KOG0299|consen 448 HRLGRWWCLK 457 (479)
T ss_pred cccceeeEee
Confidence 5554555444
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.5e-18 Score=144.95 Aligned_cols=205 Identities=20% Similarity=0.274 Sum_probs=157.7
Q ss_pred CeeEEEeecCceEEeccccc--cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecc-cccE
Q psy9316 23 SQFHLVCKIDDYVKHFNTHN--DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH-TGSV 99 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~~~--~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h-~~~v 99 (264)
+-.+++++..+.+++|+... ..+.+.+|++.|+++.++....+||+++..|.|.+-.+..+.... .+.-. ...|
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt---~f~~~sgqsv 167 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT---TFTIDSGQSV 167 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc---ceecCCCCeE
Confidence 33456788899999998753 345678999999999999999999999999999999876543221 13222 3456
Q ss_pred EeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCC
Q psy9316 100 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD 179 (264)
Q Consensus 100 ~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~ 179 (264)
.-+.+++....+|.+++.+|.|.+||+....... .-...|.++...|||+|.+..
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~-------------------------~~~~~HsAP~~gicfspsne~ 222 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF-------------------------HASEAHSAPCRGICFSPSNEA 222 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCccc-------------------------chhhhccCCcCcceecCCccc
Confidence 6889998777888999999999999997533110 112578899999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCcc-eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 180 LLSTASGDKTVRIWDARTQKS-QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 180 ~i~s~~~dg~i~iwD~~t~~~-~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
+|++.+.|..|.+||.+++.. .......+...++|+++|-+|++|+..|.|..||.+.-..+ ....-+|-+.|.+|
T Consensus 223 l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P---v~v~sah~~sVt~v 299 (673)
T KOG4378|consen 223 LLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP---VAVRSAHDASVTRV 299 (673)
T ss_pred eEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCC---ceEeeecccceeEE
Confidence 999999999999999998764 33444555678999999999999999999999998753222 23344666666554
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-16 Score=125.21 Aligned_cols=209 Identities=22% Similarity=0.358 Sum_probs=154.6
Q ss_pred eecCCCeeEEEeecCceEEecc--cc-----ccccccccCCCCEEEEEECC----CCCeEEEEECCCcEEEEEeccCCCC
Q psy9316 18 LLPSGSQFHLVCKIDDYVKHFN--TH-----NDIKEYQAHGSKVHSVAWSC----DGRRLASGSFDKSVAIFALDKKGDL 86 (264)
Q Consensus 18 ~~~~~~~~~~~~~~d~~~~~~~--~~-----~~~~~~~~h~~~V~~l~~s~----~g~~l~s~s~dg~i~v~~~~~~~~~ 86 (264)
+.|.| +++.+++-|.+||+.. .. ..-.+|..|.+.|..++|-. .+..|++++. |..++|-.+- +..
T Consensus 97 ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga-gdc~iy~tdc-~~g 173 (350)
T KOG0641|consen 97 WSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA-GDCKIYITDC-GRG 173 (350)
T ss_pred ecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC-CcceEEEeec-CCC
Confidence 34444 4555666699999853 21 22357889999999999953 2456666654 6667775442 333
Q ss_pred cccEEEecccccEEeE-EEecCCCCeEEEEeCCCcEEEEECCCCCc--------------------------ceEEEeec
Q psy9316 87 NKEVVYRGHTGSVDQL-CWHATNPDLLSTASGDKTVRIWDARTQKS--------------------------QIMLASGS 139 (264)
Q Consensus 87 ~~~~~~~~h~~~v~~i-~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------------------~~~~~~~~ 139 (264)
.....+.+|++-|..+ .| ++-.+++|+.|.+|++||++.... ..++++|-
T Consensus 174 ~~~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 174 QGFHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred CcceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 3334578999998877 46 346899999999999999975321 23678888
Q ss_pred CCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc---c---eeEeecCceEEEE
Q psy9316 140 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK---S---QIIATKGENINIT 213 (264)
Q Consensus 140 ~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~---~---~~~~~~~~~~~v~ 213 (264)
.|.+..+||++-+..+ ..+..|...|.++.|+| +..++++++.|..|++-|+...- . ..-.+...+..+.
T Consensus 251 ~dssc~lydirg~r~i---q~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~r 326 (350)
T KOG0641|consen 251 ADSSCMLYDIRGGRMI---QRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCR 326 (350)
T ss_pred CCCceEEEEeeCCcee---eeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEE
Confidence 9999999999765433 35678999999999998 56789999999999999998532 1 1123556788899
Q ss_pred EcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 214 WAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 214 ~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
|.|..-.+++.+.|.++.+|-++
T Consensus 327 wh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 327 WHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecCccceeeeccCcceEEEeccC
Confidence 99999999999999999999753
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=151.87 Aligned_cols=183 Identities=22% Similarity=0.415 Sum_probs=144.7
Q ss_pred EECCCCCeEEE--EECCCcEEEEEeccCCCCcccEEEe-cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceE
Q psy9316 58 AWSCDGRRLAS--GSFDKSVAIFALDKKGDLNKEVVYR-GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIM 134 (264)
Q Consensus 58 ~~s~~g~~l~s--~s~dg~i~v~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 134 (264)
.|..+.++++. +|..|.|.||+++.++.+....... .....|+++.|.|-+.+.|+.++.||.|++|.+..+...
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~-- 663 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP-- 663 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC--
Confidence 35566677776 5678999999999888765422111 123569999999999999999999999999998764321
Q ss_pred EEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEE
Q psy9316 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENINI 212 (264)
Q Consensus 135 ~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v 212 (264)
.........+..|...|..+.|+|--.+++++++.|-+|++||+.+... .+..+.+.++.+
T Consensus 664 -----------------e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~ 726 (1012)
T KOG1445|consen 664 -----------------ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGI 726 (1012)
T ss_pred -----------------cccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEE
Confidence 1112233456788999999999998888999999999999999998764 556677889999
Q ss_pred EEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeeecc
Q psy9316 213 TWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSLWG 260 (264)
Q Consensus 213 ~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~~~ 260 (264)
+|||+|+.+|+.++||.+++|..+++..+-.+...+.| +-.-|-+|.
T Consensus 727 AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg-tRgARi~wa 773 (1012)
T KOG1445|consen 727 AWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVG-TRGARILWA 773 (1012)
T ss_pred EECCCCcceeeeecCceEEEeCCCCCCCccccCCCCcc-CcceeEEEE
Confidence 99999999999999999999999987777777777776 555666774
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=148.02 Aligned_cols=214 Identities=18% Similarity=0.277 Sum_probs=159.0
Q ss_pred CCCCCceEeecCCCeeEEEeecCceEEeccccc----cccccccCCCCEEE-EEECC-CCCeEEEEECCCcEEEEEeccC
Q psy9316 10 TPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHN----DIKEYQAHGSKVHS-VAWSC-DGRRLASGSFDKSVAIFALDKK 83 (264)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~h~~~V~~-l~~s~-~g~~l~s~s~dg~i~v~~~~~~ 83 (264)
++.+-...+........+.++-|+.++.|.... ..+.|++|.+.|.+ +++.+ ++-+|++|+.|+.|.+|.....
T Consensus 12 gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~ 91 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA 91 (745)
T ss_pred cCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC
Confidence 333333333333334456677799999997743 23568889998887 88875 6667999999999999987542
Q ss_pred CCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC----------------cceEEEeecCCCcEEEE
Q psy9316 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK----------------SQIMLASGSFDKSVAIF 147 (264)
Q Consensus 84 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~----------------~~~~~~~~~~d~~i~i~ 147 (264)
....++++|.+.|-+++....+ .++|||+|.++++|-..... ....+++|+.|.+|++|
T Consensus 92 ---~P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklW 166 (745)
T KOG0301|consen 92 ---EPLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLW 166 (745)
T ss_pred ---CchhhhhccccceeeeecCCcC--ceEecccccceEEecchhhhcccCCcchheeeeeecCCCcEEeccCcceeeec
Confidence 2334578999999888765433 48899999999999753211 11268999999999999
Q ss_pred EeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--EeecCceEEEEEcCCCCEEEEee
Q psy9316 148 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IATKGENINITWAPNGNTIAVGN 225 (264)
Q Consensus 148 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs 225 (264)
.- +. ...+|.+|++.|..++.-|. ..|+|++.||.|++||+. +++.. ..+...+.+++..+++..+++++
T Consensus 167 k~---~~--~l~tf~gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~~-ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 167 KG---GT--LLKTFSGHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDLD-GEVLLEMHGHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred cC---Cc--hhhhhccchhheeeeEEecC--CCeEeecCCceEEEEecc-CceeeeeeccceEEEEEEecCCCCeEEEec
Confidence 53 22 23468899999999998764 357899999999999994 44322 34566788999888999999999
Q ss_pred CCCeEEEEEcc
Q psy9316 226 KEDLVTFIDVV 236 (264)
Q Consensus 226 ~d~~i~~~d~~ 236 (264)
.|+++++|+.-
T Consensus 239 EDrtlriW~~~ 249 (745)
T KOG0301|consen 239 EDRTLRIWKKD 249 (745)
T ss_pred CCceEEEeecC
Confidence 99999999854
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-17 Score=132.73 Aligned_cols=189 Identities=25% Similarity=0.458 Sum_probs=140.4
Q ss_pred ccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccC-CCCcccEEEecccccEEeEEE-ecCCCCeEEEEeCCCcEEEEE
Q psy9316 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK-GDLNKEVVYRGHTGSVDQLCW-HATNPDLLSTASGDKTVRIWD 125 (264)
Q Consensus 48 ~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~-~~~~~~~~~~~h~~~v~~i~~-~~~~~~~l~s~s~dg~i~vwd 125 (264)
.+|++-|+|+.|++.|+++++++.|++++|||.+.+ +........+.|.+.|..+.| +|.-++.++++|.|+++++|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 378899999999999999999999999999996432 334444557899999999999 455678999999999999996
Q ss_pred CCC--CC----------------------------cceEEEeecCCCcEEEEEec-------------------------
Q psy9316 126 ART--QK----------------------------SQIMLASGSFDKSVAIFALD------------------------- 150 (264)
Q Consensus 126 ~~~--~~----------------------------~~~~~~~~~~d~~i~i~~~~------------------------- 150 (264)
-.. .+ ....+++++.||.++||..-
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 421 10 11246778888888877521
Q ss_pred --------------------------------------cCC-CccceEEEeccccceeeEEEcCCCC---CEEEEEeCCC
Q psy9316 151 --------------------------------------KKG-DLNKEVVYRGHTGSVDQLCWHATNP---DLLSTASGDK 188 (264)
Q Consensus 151 --------------------------------------~~~-~~~~~~~~~~h~~~i~~i~~~~~~~---~~i~s~~~dg 188 (264)
.++ ...+...+.+|..+|..|+|.|+-+ .+||+++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 000 0001112346889999999999633 4799999999
Q ss_pred cEEEEeCCCCc----------------c--eeE----eecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 189 TVRIWDARTQK----------------S--QII----ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 189 ~i~iwD~~t~~----------------~--~~~----~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
|+||.++... . ... .+++.+.++.|+--|..|++.+.||++++|..+-
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 9999997311 1 111 1345688999999999999999999999998653
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=139.60 Aligned_cols=187 Identities=23% Similarity=0.380 Sum_probs=143.5
Q ss_pred ccCCCCEEEEEECCCCCe--EEEEECCCcEEEEEeccC-------------CCCcccEEEecccccEEeEEEecCCCCeE
Q psy9316 48 QAHGSKVHSVAWSCDGRR--LASGSFDKSVAIFALDKK-------------GDLNKEVVYRGHTGSVDQLCWHATNPDLL 112 (264)
Q Consensus 48 ~~h~~~V~~l~~s~~g~~--l~s~s~dg~i~v~~~~~~-------------~~~~~~~~~~~h~~~v~~i~~~~~~~~~l 112 (264)
-.|.+.++.+.-++-++- .++=+..|.|.||++... ........+.+|...-+.++|+|.-...+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 478888999998886654 444467899999997531 11233455778999999999999655567
Q ss_pred EEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEE
Q psy9316 113 STASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 192 (264)
Q Consensus 113 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~i 192 (264)
++|..-+.|++|...++. |..+ ...|.+|+..|..++|+|....+|+||+.||+|+|
T Consensus 228 lsGDc~~~I~lw~~~~g~----------------W~vd-------~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrI 284 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGS----------------WKVD-------QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRI 284 (440)
T ss_pred ccCccccceEeeeeccCc----------------eeec-------CccccccccchhhhccCCccCceEEeeecCceEEE
Confidence 788888889999876532 2221 12356799999999999998899999999999999
Q ss_pred EeCCCCcc----eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 193 WDARTQKS----QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 193 wD~~t~~~----~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
||++++.. ....+.+.++.|+|+-+-.+||+|+.||++.|||+|.-... +-+++++-|.+-+.||
T Consensus 285 WDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsi 353 (440)
T KOG0302|consen 285 WDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSI 353 (440)
T ss_pred EEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEE
Confidence 99999843 23456667889999988889999999999999999964433 5566777777777765
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-17 Score=147.32 Aligned_cols=179 Identities=21% Similarity=0.310 Sum_probs=142.3
Q ss_pred CCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccE-EEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCC
Q psy9316 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128 (264)
Q Consensus 50 h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~-~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~ 128 (264)
-...+.+++.++.|++.+.|+..|.|.+|++.. +-..... .-..|..+|++++.+..+ +.+++++.+|.+++||++.
T Consensus 447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~ 524 (910)
T KOG1539|consen 447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-GIHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKK 524 (910)
T ss_pred cCcceEEEEEeccCceEEEeccCCeEEEEEccc-CeeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCC
Confidence 346899999999999999999999999999864 3222111 124799999999987644 6888999999999999986
Q ss_pred CCcc------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcE
Q psy9316 129 QKSQ------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 190 (264)
Q Consensus 129 ~~~~------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i 190 (264)
.... .+++++..|-.|.++|.-..... ..|.+|...|++++|+|+ +..+++++.|++|
T Consensus 525 k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv---R~f~gh~nritd~~FS~D-grWlisasmD~tI 600 (910)
T KOG1539|consen 525 KVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV---REFWGHGNRITDMTFSPD-GRWLISASMDSTI 600 (910)
T ss_pred cceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh---HHhhccccceeeeEeCCC-CcEEEEeecCCcE
Confidence 5311 13567778888999987543322 246899999999999985 5789999999999
Q ss_pred EEEeCCCCcc-eeEeecCceEEEEEcCCCCEEEEeeCC-CeEEEEE
Q psy9316 191 RIWDARTQKS-QIIATKGENINITWAPNGNTIAVGNKE-DLVTFID 234 (264)
Q Consensus 191 ~iwD~~t~~~-~~~~~~~~~~~v~~sp~g~~la~gs~d-~~i~~~d 234 (264)
++||+-++.. ........+.+++|||+|++||++..| .-|++|-
T Consensus 601 r~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 601 RTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999999875 334456778899999999999999988 6688885
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=144.30 Aligned_cols=199 Identities=24% Similarity=0.323 Sum_probs=139.5
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCC-Cccc-EEEecccccEEeEEEecCCCCeEEEEeCCCcE
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD-LNKE-VVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 121 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~-~~~~-~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i 121 (264)
...+.+|...|.+|++.|.|-++++||.|-+|++||+..-.. +..- .+..+-...|..+.|++.++ .|++.+.....
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aqa 238 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQA 238 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCcce
Confidence 345778888999999999999999999999999999864211 1110 11223445688899998665 45556777889
Q ss_pred EEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce
Q psy9316 122 RIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 201 (264)
Q Consensus 122 ~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~ 201 (264)
+|+|-...+.. -+. -|.-+|.|+. -.++|...+++-+|+|.+...|+|++.||+++|||+.....+
T Consensus 239 kl~DRdG~~~~-e~~----KGDQYI~Dm~---------nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 239 KLLDRDGFEIV-EFS----KGDQYIRDMY---------NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred eEEccCCceee-eee----ccchhhhhhh---------ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 99996532211 111 1122233322 237899999999999999899999999999999999876533
Q ss_pred e--Eeec------CceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccce--eeeee
Q psy9316 202 I--IATK------GENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLM--ETRSL 258 (264)
Q Consensus 202 ~--~~~~------~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~--~~~~~ 258 (264)
. ..+. -.+..++|+|||+.+|+|+.||.|.+||.. ++..+...---.+|.- ++.||
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~-~~~v~p~~~vk~AH~~g~~Itsi 370 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKG-SRTVRPVMKVKDAHLPGQDITSI 370 (641)
T ss_pred eeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecC-CcccccceEeeeccCCCCceeEE
Confidence 2 2221 135789999999999999999999999973 3333333323357766 55554
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-18 Score=158.84 Aligned_cols=220 Identities=18% Similarity=0.279 Sum_probs=166.5
Q ss_pred EeecCCCe---eEEEeecCceEEeccccc--------cccccccCCCCEEEEEECCCC-CeEEEEECCCcEEEEEeccCC
Q psy9316 17 KLLPSGSQ---FHLVCKIDDYVKHFNTHN--------DIKEYQAHGSKVHSVAWSCDG-RRLASGSFDKSVAIFALDKKG 84 (264)
Q Consensus 17 ~~~~~~~~---~~~~~~~d~~~~~~~~~~--------~~~~~~~h~~~V~~l~~s~~g-~~l~s~s~dg~i~v~~~~~~~ 84 (264)
.+-+.+++ ++..+..||.|-+|+..+ .+.++.-|++.|..|.|++.+ ++|++|+.||.|.|||+++..
T Consensus 71 ~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 71 AWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE 150 (1049)
T ss_pred eecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC
Confidence 34444444 244577899999997644 356788999999999999955 599999999999999998633
Q ss_pred CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce----------------------EEEeecCCC
Q psy9316 85 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI----------------------MLASGSFDK 142 (264)
Q Consensus 85 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----------------------~~~~~~~d~ 142 (264)
. .....-....+.|.+++|+....++|++++.+|++.+||++..+..+ .+++++.|.
T Consensus 151 t-P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd 229 (1049)
T KOG0307|consen 151 T-PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD 229 (1049)
T ss_pred C-CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCC
Confidence 2 11111112457799999998888999999999999999998764211 233444332
Q ss_pred ---cEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeec--CceEEEEEcCC
Q psy9316 143 ---SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK--GENINITWAPN 217 (264)
Q Consensus 143 ---~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~--~~~~~v~~sp~ 217 (264)
.|.+||++.-.. ...++.+|..+|-++.|++.+..+++|++.|+.|..||.++++..-.... .-+..+.|.|.
T Consensus 230 ~~PviqlWDlR~ass--P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 230 SAPVIQLWDLRFASS--PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPR 307 (1049)
T ss_pred CCceeEeecccccCC--chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCC
Confidence 478899875332 23356789999999999999989999999999999999999875333322 34778999997
Q ss_pred CC-EEEEeeCCCeEEEEEcccCC
Q psy9316 218 GN-TIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 218 g~-~la~gs~d~~i~~~d~~~~~ 239 (264)
.- .+++++-||.|.|+.+....
T Consensus 308 ~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 308 NPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CcchhhhheeccceeeeeeecCC
Confidence 76 88999999999999987633
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.5e-18 Score=141.61 Aligned_cols=198 Identities=21% Similarity=0.350 Sum_probs=143.6
Q ss_pred EEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEE
Q psy9316 27 LVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 104 (264)
Q Consensus 27 ~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~ 104 (264)
+.++.|+..+.|+.. ...+++.+|++.|+++.|......+++|+.|.+|+.||+.. ........ ..+.+.++..
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C~kt~l---~~S~cnDI~~ 310 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYCSKTVL---PGSQCNDIVC 310 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-hheecccc---ccccccceEe
Confidence 456668888888764 35678999999999999988777799999999999999875 33322211 2234555554
Q ss_pred ecCCCCeEEEEeCCCcEEEEECCCCCcce------------------EEEeecCCCcEEEEEeccCCCccceEEEecc--
Q psy9316 105 HATNPDLLSTASGDKTVRIWDARTQKSQI------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGH-- 164 (264)
Q Consensus 105 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h-- 164 (264)
. ...++||-.|++|+.||.++..... .+.+.+-|.++.+.|++....... +.-.+.
T Consensus 311 ~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~-~sA~g~k~ 386 (459)
T KOG0288|consen 311 S---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT-FSAEGFKC 386 (459)
T ss_pred c---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEE-eecccccc
Confidence 3 3457788899999999998765322 244556677777777765332111 110111
Q ss_pred ccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee----cCceEEEEEcCCCCEEEEeeCCCeEEEE
Q psy9316 165 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT----KGENINITWAPNGNTIAVGNKEDLVTFI 233 (264)
Q Consensus 165 ~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~----~~~~~~v~~sp~g~~la~gs~d~~i~~~ 233 (264)
...++.+.|+|+ +.++++|+.||+|+||++.++++..... +..+.+++|+|.|.+|+.++++..+.+|
T Consensus 387 asDwtrvvfSpd-~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 387 ASDWTRVVFSPD-GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ccccceeEECCC-CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 123788999985 5799999999999999999988643322 2248899999999999999999999998
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-16 Score=129.92 Aligned_cols=192 Identities=24% Similarity=0.386 Sum_probs=133.5
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccC---------CCC------------------------cccE
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK---------GDL------------------------NKEV 90 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~---------~~~------------------------~~~~ 90 (264)
+..+.+|++.|++++|+.||++|++++.|++|++|++..= .+. ....
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4567899999999999999999999999999999986520 000 0000
Q ss_pred E-----------------------EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC-----------------
Q psy9316 91 V-----------------------YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK----------------- 130 (264)
Q Consensus 91 ~-----------------------~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~----------------- 130 (264)
. .+.|...+..+-. ..+..++.+++.|-.|.+|+++.+-
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi-A~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI-AGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEee-cCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeC
Confidence 0 0123344444433 2345789999999999999997421
Q ss_pred -cceEEEeecCCCcEEEEEec--cCCC---ccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc-----
Q psy9316 131 -SQIMLASGSFDKSVAIFALD--KKGD---LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK----- 199 (264)
Q Consensus 131 -~~~~~~~~~~d~~i~i~~~~--~~~~---~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~----- 199 (264)
+...++++++--.+.+|..- .++. ..+...+++|++.|..++|+++ +..++|.+.||+++|||..-..
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~-S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS-STRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC-cceeEEEecCCcEEEeeccceEecCCC
Confidence 11245566666667888742 2333 2344577899999999999974 5678899999999999986432
Q ss_pred cee-E-------eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 200 SQI-I-------ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 200 ~~~-~-------~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
..+ . ...+...+++++|.|+.||+.. ...+.+|..+++
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g 362 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDG 362 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccC
Confidence 111 1 1123456899999999999887 456799987763
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=130.76 Aligned_cols=162 Identities=25% Similarity=0.382 Sum_probs=127.5
Q ss_pred cccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeC--CCcEE
Q psy9316 45 KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG--DKTVR 122 (264)
Q Consensus 45 ~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~--dg~i~ 122 (264)
+.|+...+.|+++.|+++|.++++++.|.++++||... +.. ......++.-+..++|.... +.++.++. |.+|+
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~--~~ti~skkyG~~~~~Fth~~-~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQ--VKTINSKKYGVDLACFTHHS-NTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC-Cce--eeEeecccccccEEEEecCC-ceEEEccCCCCCceE
Confidence 44555678999999999999999999999999999864 322 23345566667777886544 34444454 77788
Q ss_pred EEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee
Q psy9316 123 IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI 202 (264)
Q Consensus 123 vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~ 202 (264)
+-++...+.. ..|.+|.+.|+.|+-+|.+ +.++|++.|++|++||+++..++-
T Consensus 84 yLsl~dNkyl--------------------------RYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg 136 (311)
T KOG1446|consen 84 YLSLHDNKYL--------------------------RYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQG 136 (311)
T ss_pred EEEeecCceE--------------------------EEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCce
Confidence 7777654422 2468999999999999976 788899999999999999888766
Q ss_pred EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 203 IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 203 ~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.........++|+|.|-++|+|.....|.+||++.
T Consensus 137 ~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 137 LLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred EEecCCCcceeECCCCcEEEEecCCCeEEEEEecc
Confidence 66555555689999999999999999999999986
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.9e-17 Score=131.77 Aligned_cols=178 Identities=23% Similarity=0.438 Sum_probs=127.2
Q ss_pred ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCC-CCeEEEEeCCCcEEEE
Q psy9316 46 EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN-PDLLSTASGDKTVRIW 124 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~~l~s~s~dg~i~vw 124 (264)
.|..|.+.|++++.+ +.++++||.|.+|++||+...... ..+..|.+.|+++.|.+.. ...|++|+.||.|.+|
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql---g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL---GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh---cceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 567899999999985 999999999999999998754332 2355799999999997643 2367899999999999
Q ss_pred ECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe
Q psy9316 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA 204 (264)
Q Consensus 125 d~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~ 204 (264)
+...= .....+++|...|+.++.+|.+ .+-++.+.|+.++.||+-.++.....
T Consensus 113 ~~~~W--------------------------~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 113 RVGSW--------------------------ELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred EcCCe--------------------------EEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceee
Confidence 98641 1123467898899999999964 67778899999999999765532111
Q ss_pred -ecCceEEEEEcC---------------------------------------CCCEEEEeeCCCeEEEEEcccCCCCCCC
Q psy9316 205 -TKGENINITWAP---------------------------------------NGNTIAVGNKEDLVTFIDVVKSLPPRER 244 (264)
Q Consensus 205 -~~~~~~~v~~sp---------------------------------------~g~~la~gs~d~~i~~~d~~~~~~~~~~ 244 (264)
.......|.|+| ++.+|++|..|+.+.+||.....+.
T Consensus 166 ~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~--- 242 (362)
T KOG0294|consen 166 NLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPL--- 242 (362)
T ss_pred ccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccc---
Confidence 111111222333 4567777777777778877654433
Q ss_pred cccCcccceeeeeec
Q psy9316 245 TLTSRGHLMETRSLW 259 (264)
Q Consensus 245 ~~~~~~h~~~~~~~~ 259 (264)
..+.||..-|+.+-
T Consensus 243 -~~~~AH~~RVK~i~ 256 (362)
T KOG0294|consen 243 -TEFLAHENRVKDIA 256 (362)
T ss_pred -eeeecchhheeeeE
Confidence 34567776666543
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=138.52 Aligned_cols=178 Identities=22% Similarity=0.351 Sum_probs=134.0
Q ss_pred CCCeEEE---EECCCcEEEEEeccCCCCcc-cEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEe
Q psy9316 62 DGRRLAS---GSFDKSVAIFALDKKGDLNK-EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLAS 137 (264)
Q Consensus 62 ~g~~l~s---~s~dg~i~v~~~~~~~~~~~-~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 137 (264)
+.++|+. ++-.|...+.-+++.|.... .....+|+++|.+++|.|.+++.++|||.|.+|.+|++-.+....
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~---- 118 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR---- 118 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCccccc----
Confidence 4566654 34455666666665554332 223569999999999999999999999999999999985322110
Q ss_pred ecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce-eEeecCceEEEEEcC
Q psy9316 138 GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-IIATKGENINITWAP 216 (264)
Q Consensus 138 ~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~-~~~~~~~~~~v~~sp 216 (264)
.-......+.+|+.+|.-+.|+|.-...|+|++.|+.|.+||+.+++.. ...+++-+.+++|+-
T Consensus 119 ---------------~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~ 183 (472)
T KOG0303|consen 119 ---------------DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR 183 (472)
T ss_pred ---------------CcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc
Confidence 0012334678999999999999988889999999999999999999853 344677789999999
Q ss_pred CCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeeecc
Q psy9316 217 NGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSLWG 260 (264)
Q Consensus 217 ~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~~~ 260 (264)
||.+|++.+.|..|++||.+++....|. +.-.| .-.+|++|.
T Consensus 184 dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG-~k~~Raifl 225 (472)
T KOG0303|consen 184 DGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEG-AKPARAIFL 225 (472)
T ss_pred CCceeeeecccceeEEEcCCCCcEeeec-ccccC-CCcceeEEe
Confidence 9999999999999999999886665544 22223 235677774
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-18 Score=153.74 Aligned_cols=180 Identities=23% Similarity=0.404 Sum_probs=144.9
Q ss_pred EEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEE
Q psy9316 27 LVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 104 (264)
Q Consensus 27 ~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~ 104 (264)
+.+++|-.+-+|.. ...+..|.+|.++|.+|.|+++...|++|+.+|+|++||++.... ...+-+|...+..+.|
T Consensus 44 ~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~---vrtLtgh~~~~~sv~f 120 (825)
T KOG0267|consen 44 VTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKI---VRTLTGHLLNITSVDF 120 (825)
T ss_pred ccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhh---hhhhhccccCcceeee
Confidence 34455555444533 445667899999999999999999999999999999999975322 2346689999999999
Q ss_pred ecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEE
Q psy9316 105 HATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA 184 (264)
Q Consensus 105 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~ 184 (264)
+|-. .++++|+.|+.+++||.+...+ ...+.+|...|..+.|.|+ +.+++++
T Consensus 121 ~P~~-~~~a~gStdtd~~iwD~Rk~Gc--------------------------~~~~~s~~~vv~~l~lsP~-Gr~v~~g 172 (825)
T KOG0267|consen 121 HPYG-EFFASGSTDTDLKIWDIRKKGC--------------------------SHTYKSHTRVVDVLRLSPD-GRWVASG 172 (825)
T ss_pred ccce-EEeccccccccceehhhhccCc--------------------------eeeecCCcceeEEEeecCC-Cceeecc
Confidence 9965 6778999999999999874221 1245678888999999995 5799999
Q ss_pred eCCCcEEEEeCCCCccee--EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 185 SGDKTVRIWDARTQKSQI--IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 185 ~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
++|.+++|||+..++... ..+.+.+.++.|+|..-.++.|+.|++++|||+++
T Consensus 173 ~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred CCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence 999999999998887532 33456788899999999999999999999999884
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-17 Score=144.98 Aligned_cols=215 Identities=15% Similarity=0.248 Sum_probs=161.3
Q ss_pred CCceEeecCCCeeEEEeecCceEEecccccc--ccccccCCCCEEEEEECC---CCCeEEEEECCCcEEEEEeccCCCCc
Q psy9316 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHND--IKEYQAHGSKVHSVAWSC---DGRRLASGSFDKSVAIFALDKKGDLN 87 (264)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~h~~~V~~l~~s~---~g~~l~s~s~dg~i~v~~~~~~~~~~ 87 (264)
||+++.+++|.- =|+++.|+..+. ......|.+.|.||.|+. ..++|++|+.|..|.|||+..+ ..
T Consensus 468 Sp~gqhLAsGDr-------~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn--y~ 538 (1080)
T KOG1408|consen 468 SPDGQHLASGDR-------GGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN--YD 538 (1080)
T ss_pred CCCcceecccCc-------cCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--cc
Confidence 577777777643 467888877654 345679999999999985 2478999999999999998643 33
Q ss_pred ccEEEecccccEEeEEEecCC-CCeEEEEeCCCcEEE------------------------EECCCCCcceEEEeecCCC
Q psy9316 88 KEVVYRGHTGSVDQLCWHATN-PDLLSTASGDKTVRI------------------------WDARTQKSQIMLASGSFDK 142 (264)
Q Consensus 88 ~~~~~~~h~~~v~~i~~~~~~-~~~l~s~s~dg~i~v------------------------wd~~~~~~~~~~~~~~~d~ 142 (264)
....+.+|.+.|+++.|-..+ ...+++++.|+.|.. ||+.......++++++.|.
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr 618 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR 618 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc
Confidence 334578999999999997544 357788888877643 3333333344689999999
Q ss_pred cEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE--eecCceEEEEEcCCCCE
Q psy9316 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII--ATKGENINITWAPNGNT 220 (264)
Q Consensus 143 ~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~--~~~~~~~~v~~sp~g~~ 220 (264)
+|+||++..........--++|.+..-.+...|. +.++++.+.|.++.|+|..++++... .+...++.+.|.+|-++
T Consensus 619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS-giY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkH 697 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS-GIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKH 697 (1080)
T ss_pred ceEEEeccccceeeeecccccCCCceEEEEECCC-ccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchh
Confidence 9999998754432211122346566666777774 57999999999999999999997443 34455889999999999
Q ss_pred EEEeeCCCeEEEEEccc
Q psy9316 221 IAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 221 la~gs~d~~i~~~d~~~ 237 (264)
|+.++.||.|.+|.+.-
T Consensus 698 lISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 698 LISVSGDGCIFVWKLPL 714 (1080)
T ss_pred heeecCCceEEEEECch
Confidence 99999999999999764
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-16 Score=144.96 Aligned_cols=196 Identities=23% Similarity=0.368 Sum_probs=144.7
Q ss_pred ecCCCeeEEEeecCceEEecccccccc--ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEeccc
Q psy9316 19 LPSGSQFHLVCKIDDYVKHFNTHNDIK--EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96 (264)
Q Consensus 19 ~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~ 96 (264)
++..+..+++|+.++.+..|.-++... .+....-++.+++|+-+|++++.||.|-.|++.++... .....+++|.
T Consensus 62 ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~---s~~~~lrgh~ 138 (933)
T KOG1274|consen 62 IACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS---SQEKVLRGHD 138 (933)
T ss_pred EeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc---chheeecccC
Confidence 334444567899999998876543321 22333568999999999999999999999999987643 2345688999
Q ss_pred ccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCC
Q psy9316 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 176 (264)
Q Consensus 97 ~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~ 176 (264)
++|.++.++|.+ .+|++.+.||.|++||+..+.....+ ++. .... .+. ....+..++|+|.
T Consensus 139 apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl-----~~v------~k~n------~~~-~s~i~~~~aW~Pk 199 (933)
T KOG1274|consen 139 APVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTL-----TGV------DKDN------EFI-LSRICTRLAWHPK 199 (933)
T ss_pred CceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhc-----ccC------Cccc------ccc-ccceeeeeeecCC
Confidence 999999999966 79999999999999999875432211 000 0000 000 1235677899998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcceeEeec----CceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 177 NPDLLSTASGDKTVRIWDARTQKSQIIATK----GENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 177 ~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~----~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
++.++ ..+.|+.|++|+..+.+.+..... .....+.|||+|+|||+++.||.|.|||+.+
T Consensus 200 ~g~la-~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 200 GGTLA-VPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCeEE-eeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 76554 567899999999998876443322 2256789999999999999999999999986
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-17 Score=131.09 Aligned_cols=221 Identities=17% Similarity=0.224 Sum_probs=165.8
Q ss_pred CeeEEEeecCce--EEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEE
Q psy9316 23 SQFHLVCKIDDY--VKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 100 (264)
Q Consensus 23 ~~~~~~~~~d~~--~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~ 100 (264)
+-|+|+++.|+. ++.=+++.=+-+|.+|++.|+...++.+..+.++++.|.+-++||.-+...+ ..+ .|..-|.
T Consensus 29 g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel---hsf-~hkhivk 104 (334)
T KOG0278|consen 29 GYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL---HSF-EHKHIVK 104 (334)
T ss_pred ceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh---hhh-hhhheee
Confidence 457778888885 4444556667899999999999999999999999999999999986542211 112 4778899
Q ss_pred eEEEecCCCCeEEEEeCCCcEEEEECCCCCcce--------------------EEEeecCCCcEEEEEeccCCCccceEE
Q psy9316 101 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--------------------MLASGSFDKSVAIFALDKKGDLNKEVV 160 (264)
Q Consensus 101 ~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~ 160 (264)
.++|+. +.++|++|+.++.+|+||++..+.+. .+.+..+|+++++||.++.......
T Consensus 105 ~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL-- 181 (334)
T KOG0278|consen 105 AVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL-- 181 (334)
T ss_pred eEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE--
Confidence 999986 55788899999999999998754321 3566689999999999876543321
Q ss_pred EeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 161 ~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
....+|+++-.+++ +++ ++....++|++||..+-.... ...+-.+.+.+++|+...+++|..|..++-||-.++.
T Consensus 182 --~~~s~VtSlEvs~d-G~i-lTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 182 --EFNSPVTSLEVSQD-GRI-LTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred --ecCCCCcceeeccC-CCE-EEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCc
Confidence 23457888888764 345 466788999999999876422 2334557788999999999999999999999966533
Q ss_pred CCCCCccc-Ccccceeeeee
Q psy9316 240 PPRERTLT-SRGHLMETRSL 258 (264)
Q Consensus 240 ~~~~~~~~-~~~h~~~~~~~ 258 (264)
+... .+||-.-|-||
T Consensus 258 ----Ei~~~nkgh~gpVhcV 273 (334)
T KOG0278|consen 258 ----EIGSYNKGHFGPVHCV 273 (334)
T ss_pred ----eeeecccCCCCceEEE
Confidence 3333 37776666554
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=131.74 Aligned_cols=214 Identities=13% Similarity=0.209 Sum_probs=151.3
Q ss_pred CCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCC-CCeEEEEECCCcEEEEEeccCCCCcccEEEeccccc
Q psy9316 22 GSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCD-GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 98 (264)
Q Consensus 22 ~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~ 98 (264)
++++...++.-|.|++.+. ....+.+.+|.+.|+.|.+.|+ .++|+++|.|.+|++|++.+..-....--+.+|.+.
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 5677777888899998765 4567789999999999999995 578999999999999998753211111125689999
Q ss_pred EEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc---------------c------------------------------e
Q psy9316 99 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---------------Q------------------------------I 133 (264)
Q Consensus 99 v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---------------~------------------------------~ 133 (264)
|.++.|++++ .+++|++.|..+++|+++..+- . .
T Consensus 184 VLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd 262 (385)
T KOG1034|consen 184 VLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD 262 (385)
T ss_pred EEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh
Confidence 9999999866 5899999999999999974210 0 0
Q ss_pred EEEeecCCCcEEEEEe-ccCCCccc----------eEEEeccccceeeEEEcCC-CCCEEEEEeCCCcEEEEeCCCCcce
Q psy9316 134 MLASGSFDKSVAIFAL-DKKGDLNK----------EVVYRGHTGSVDQLCWHAT-NPDLLSTASGDKTVRIWDARTQKSQ 201 (264)
Q Consensus 134 ~~~~~~~d~~i~i~~~-~~~~~~~~----------~~~~~~h~~~i~~i~~~~~-~~~~i~s~~~dg~i~iwD~~t~~~~ 201 (264)
++++-+-++.|-.|.. .....+.. ...+.-..-.|..+.|.-+ -..++|.|.+.|.+.+||+++.+..
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 2455566667777765 21111100 0011111224555555421 3468899999999999999987642
Q ss_pred ---eEee---cCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 202 ---IIAT---KGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 202 ---~~~~---~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
...+ ...+...+||.||..|+..+.|++|--||..
T Consensus 343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 1112 1235678999999999999999999999954
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-16 Score=125.25 Aligned_cols=217 Identities=16% Similarity=0.227 Sum_probs=156.8
Q ss_pred EeecCCCeeEEEeecCceEEecccccc----ccccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCcccEE
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHND----IKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNKEVV 91 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~ 91 (264)
.+...|.. +..++.|++++.|+.-.. -..+.+|.+.|-.++|+| +.+++++++.|++|++||+...+.. ..
T Consensus 27 ~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~---~~ 102 (313)
T KOG1407|consen 27 AWNCDGTK-LASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT---AR 102 (313)
T ss_pred EEcccCce-eeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE---EE
Confidence 34444443 456777888888865321 124678999999999998 6789999999999999998653221 22
Q ss_pred EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc------------------eEEEeecCCCcEEEEEeccCC
Q psy9316 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ------------------IMLASGSFDKSVAIFALDKKG 153 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------------------~~~~~~~~d~~i~i~~~~~~~ 153 (264)
....... .-+.|+|.+ .+++.++.|..|...|.++.+.. .++..-+..|.|.|...-
T Consensus 103 i~~~~en-i~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp--- 177 (313)
T KOG1407|consen 103 IETKGEN-INITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP--- 177 (313)
T ss_pred eeccCcc-eEEEEcCCC-CEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecc---
Confidence 2222233 356899966 67778999999999998874311 133444445677776542
Q ss_pred CccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--ecCceEEEEEcCCCCEEEEeeCCCeEE
Q psy9316 154 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--TKGENINITWAPNGNTIAVGNKEDLVT 231 (264)
Q Consensus 154 ~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~~~~~~~v~~sp~g~~la~gs~d~~i~ 231 (264)
.+.+.....+|...-.+|.|+|. +.+||+|+.|-.+-+||+..--+.... ..-++..++||.||++||+||.|.+|-
T Consensus 178 sLkpv~si~AH~snCicI~f~p~-GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~ID 256 (313)
T KOG1407|consen 178 SLKPVQSIKAHPSNCICIEFDPD-GRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFID 256 (313)
T ss_pred ccccccccccCCcceEEEEECCC-CceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEE
Confidence 22333456789988889999985 579999999999999999876654333 334677899999999999999999999
Q ss_pred EEEcccCCCCCC
Q psy9316 232 FIDVVKSLPPRE 243 (264)
Q Consensus 232 ~~d~~~~~~~~~ 243 (264)
|=++.+|...+|
T Consensus 257 IA~vetGd~~~e 268 (313)
T KOG1407|consen 257 IAEVETGDRVWE 268 (313)
T ss_pred eEecccCCeEEE
Confidence 999988776654
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-17 Score=153.24 Aligned_cols=189 Identities=22% Similarity=0.374 Sum_probs=144.4
Q ss_pred CEEEEEECCCCCe----EEEEECCCcEEEEEecc---CCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEE
Q psy9316 53 KVHSVAWSCDGRR----LASGSFDKSVAIFALDK---KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125 (264)
Q Consensus 53 ~V~~l~~s~~g~~----l~s~s~dg~i~v~~~~~---~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd 125 (264)
.-+.|+|.+.|.. |+.|..||.|.+|+... +........+..|++.|..+.|++..++++++|+.||.|.+||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 4578999987766 88899999999999765 2222223446789999999999998888999999999999999
Q ss_pred CCCCCc----------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEE
Q psy9316 126 ARTQKS----------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST 183 (264)
Q Consensus 126 ~~~~~~----------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s 183 (264)
+++.+. ..++++++.+|.+.|||++.+..+... ....-...+..+.|+|++...+++
T Consensus 146 lnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l-s~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 146 LNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL-SDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred cCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc-ccCCCccceeeeeeCCCCceeeee
Confidence 987431 124788999999999999876443221 111112347789999998877777
Q ss_pred EeCC---CcEEEEeCCCCcc---eeEeecCceEEEEEcCCC-CEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 184 ASGD---KTVRIWDARTQKS---QIIATKGENINITWAPNG-NTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 184 ~~~d---g~i~iwD~~t~~~---~~~~~~~~~~~v~~sp~g-~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
+++| -.|.+||+|.-.. ....|...+.+++|++.+ .+|+++..|+.+..|+.+++....
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 7765 5689999986542 223456678999999977 888999999999999988754443
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-16 Score=139.69 Aligned_cols=233 Identities=22% Similarity=0.335 Sum_probs=164.7
Q ss_pred CCCceEeecCCCeeEEEeecCceEEeccccc----cc-----------cc------------------------cccCCC
Q psy9316 12 KSPEYKLLPSGSQFHLVCKIDDYVKHFNTHN----DI-----------KE------------------------YQAHGS 52 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~-----------~~------------------------~~~h~~ 52 (264)
++|+-+-+|-+. .++|+.|++|++|++.. .+ +. .....-
T Consensus 383 ~~~~~aclp~~c--F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~ 460 (1080)
T KOG1408|consen 383 HSPTAACLPRGC--FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRF 460 (1080)
T ss_pred cCcccccCCccc--eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCccc
Confidence 455556666664 47899999999997532 11 00 011223
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecC--CCCeEEEEeCCCcEEEEECCCCC
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT--NPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
.+.+++.+|+|++|++|...|+++||++.. .+....+++|.+.|.|+.++.. ...+|+++++|..|.++|+...-
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~---l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQE---LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehh---hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 589999999999999999999999999864 3444557899999999999742 23588999999999999985421
Q ss_pred ----------------------cceEEEeecCCCcEEEEEeccCCCccceEEEecc-----ccceeeEEEcCCCCCEEEE
Q psy9316 131 ----------------------SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH-----TGSVDQLCWHATNPDLLST 183 (264)
Q Consensus 131 ----------------------~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h-----~~~i~~i~~~~~~~~~i~s 183 (264)
....+++++.|.+|.+-..+..+. ...|..| ...++.+...|. ..++++
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~---g~~f~r~t~t~~ktTlYDm~Vdp~-~k~v~t 613 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS---GRLFPRHTQTLSKTTLYDMAVDPT-SKLVVT 613 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC---ceeccccccccccceEEEeeeCCC-cceEEE
Confidence 012345555666665543322111 1112112 246788888774 578899
Q ss_pred EeCCCcEEEEeCCCCcceeEe-----ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeee
Q psy9316 184 ASGDKTVRIWDARTQKSQIIA-----TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRS 257 (264)
Q Consensus 184 ~~~dg~i~iwD~~t~~~~~~~-----~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~ 257 (264)
+++|..|+|||+++++....+ +.+....+...|.|.|+|+.+.|.++.++|-..+ |..++-.||-+.|+-
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg----EcvA~m~GHsE~VTG 688 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG----ECVAQMTGHSEAVTG 688 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc----hhhhhhcCcchheee
Confidence 999999999999998753332 2345678899999999999999999999997654 445666788776654
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-16 Score=138.50 Aligned_cols=222 Identities=15% Similarity=0.259 Sum_probs=147.0
Q ss_pred ceEeecCCCeeEEEeecCceEEeccccc--c--ccccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCc--
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTHN--D--IKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLN-- 87 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~--~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~-- 87 (264)
|..+.| |...+++++.|..++.|+... + ...+.+|.+.|.+++|.| +...+++|+.||.|.+||+..++...
T Consensus 105 Dl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e 183 (720)
T KOG0321|consen 105 DLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALE 183 (720)
T ss_pred eeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHH
Confidence 345556 444567799999999998642 2 234889999999999999 56788899999999999976433100
Q ss_pred ----------------------ccEEEeccccc----EEeEEEecCCCCeEEEEeC-CCcEEEEECCCCCcc--------
Q psy9316 88 ----------------------KEVVYRGHTGS----VDQLCWHATNPDLLSTASG-DKTVRIWDARTQKSQ-------- 132 (264)
Q Consensus 88 ----------------------~~~~~~~h~~~----v~~i~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~-------- 132 (264)
.....+++... |+.+.| . |...|++++. |+.|+|||++.....
T Consensus 184 ~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~ 261 (720)
T KOG0321|consen 184 EFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS 261 (720)
T ss_pred HHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence 00112233333 444444 3 5567777777 999999999874311
Q ss_pred ----------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccc-cceee-EEEcCCCCCEEEEEeCCC
Q psy9316 133 ----------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT-GSVDQ-LCWHATNPDLLSTASGDK 188 (264)
Q Consensus 133 ----------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~-~~i~~-i~~~~~~~~~i~s~~~dg 188 (264)
..+.+.+.|++|..|++...+... ...+.++. ..++. -..+| ++.++++|+.|.
T Consensus 262 ~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP-~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~ 339 (720)
T KOG0321|consen 262 DKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP-VAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDE 339 (720)
T ss_pred cCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc-hhhccCcccceeeeeeecCC-CCceEeccCCCc
Confidence 123334459999999986543221 11223322 12211 12344 567899999999
Q ss_pred cEEEEeCCCCccee---EeecCceEEEEEcCCC-CEEEEeeCCCeEEEEEcccCCCC
Q psy9316 189 TVRIWDARTQKSQI---IATKGENINITWAPNG-NTIAVGNKEDLVTFIDVVKSLPP 241 (264)
Q Consensus 189 ~i~iwD~~t~~~~~---~~~~~~~~~v~~sp~g-~~la~gs~d~~i~~~d~~~~~~~ 241 (264)
..++|.+.+-+... ..+..++..++|.|.. .-+++++.|-.+++|++..+++-
T Consensus 340 ~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 340 QAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred ceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhh
Confidence 99999999876432 3345578899998743 34566699999999999765543
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-17 Score=132.55 Aligned_cols=192 Identities=24% Similarity=0.408 Sum_probs=150.4
Q ss_pred cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEE
Q psy9316 43 DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122 (264)
Q Consensus 43 ~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~ 122 (264)
..+.|.+|++.|+.++-..-...+.+++.|.+-++|.++.. .+ ...|.+|.+.|.++.|++.+ .+++++|.|++..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-~C--L~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taH 215 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG-AC--LATYTGHTGSVNSIKFHNSG-LLLLTASGDETAH 215 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc-cc--eeeecccccceeeEEecccc-ceEEEccCCcchH
Confidence 56789999999999998776678999999999999998753 22 34588999999999999855 7899999999999
Q ss_pred EEECCC----CC-----------c--------------------------------------------ceEEEeecCCCc
Q psy9316 123 IWDART----QK-----------S--------------------------------------------QIMLASGSFDKS 143 (264)
Q Consensus 123 vwd~~~----~~-----------~--------------------------------------------~~~~~~~~~d~~ 143 (264)
+|.... .+ + ...+++++.|.+
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence 996210 00 0 013678888999
Q ss_pred EEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc---eeEeecCceEEEEEcCCCCE
Q psy9316 144 VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---QIIATKGENINITWAPNGNT 220 (264)
Q Consensus 144 i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~---~~~~~~~~~~~v~~sp~g~~ 220 (264)
-.+||....-. ...+.+|....+.++-+|. ..++++.+.|-++++||.+..-. .++.+...+.++.|.-+ ..
T Consensus 296 AnlwDVEtge~---v~~LtGHd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~ 370 (481)
T KOG0300|consen 296 ANLWDVETGEV---VNILTGHDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DR 370 (481)
T ss_pred ceeeeeccCce---eccccCcchhccccccCCc-ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-Cc
Confidence 99999865322 2246789888888888885 46888999999999999995433 23445667889999864 45
Q ss_pred EEEeeCCCeEEEEEcccCCCCCC
Q psy9316 221 IAVGNKEDLVTFIDVVKSLPPRE 243 (264)
Q Consensus 221 la~gs~d~~i~~~d~~~~~~~~~ 243 (264)
+++||.|.+|++||++.|+.+-.
T Consensus 371 vVSgSDDrTvKvWdLrNMRsplA 393 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPLA 393 (481)
T ss_pred eeecCCCceEEEeeeccccCcce
Confidence 67999999999999999887654
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-16 Score=132.27 Aligned_cols=181 Identities=20% Similarity=0.299 Sum_probs=140.9
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC--
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-- 130 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~-- 130 (264)
.+.++...|....+++|+.|.++.++|...+. ...++++|...|..+.+++.. ..+++++.|..|++|-.-...
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q---~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQ---ILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhh---hhhhccCcceEEEEEEeccch-hheeecCCcceEEeeccccccCc
Confidence 57888888888899999999999999865432 234689999999999999855 678899999999999764322
Q ss_pred -----------------cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEE
Q psy9316 131 -----------------SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193 (264)
Q Consensus 131 -----------------~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iw 193 (264)
...++++++.|+...+.+++....+.... -....-.+.+..|+|+ +-+|.+|..||.++||
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs-~~~s~v~~ts~~fHpD-gLifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS-DETSDVEYTSAAFHPD-GLIFGTGTPDGVVKIW 374 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe-eccccceeEEeeEcCC-ceEEeccCCCceEEEE
Confidence 12367888999999988887654332210 0011124788999995 5789999999999999
Q ss_pred eCCCCccee--EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 194 DARTQKSQI--IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 194 D~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
|+.++.... -.+.+.+..++|+.+|=|||+++.|+.|++||+|+..
T Consensus 375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred EcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 999887432 2356778899999999999999999999999999744
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-17 Score=148.25 Aligned_cols=197 Identities=26% Similarity=0.394 Sum_probs=156.1
Q ss_pred ceEeecCCCCCceEeecCCCeeEE-EeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEe
Q psy9316 4 PVIQFHTPKSPEYKLLPSGSQFHL-VCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFAL 80 (264)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~ 80 (264)
|.+.|..+.+|=..+--..++.++ .+..+|.||.|+. .+.++++.+|...+..++|+|-+.+.++|+.|..+++||+
T Consensus 62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~ 141 (825)
T KOG0267|consen 62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI 141 (825)
T ss_pred hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhh
Confidence 456666777766544444444444 4667899999976 4667899999999999999999999999999999999998
Q ss_pred ccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEE
Q psy9316 81 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVV 160 (264)
Q Consensus 81 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~ 160 (264)
...+ ....+++|...|..+.|.|++ +++++++.|.++++||+..++.. ..
T Consensus 142 Rk~G---c~~~~~s~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~--------------------------~e 191 (825)
T KOG0267|consen 142 RKKG---CSHTYKSHTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKLS--------------------------KE 191 (825)
T ss_pred hccC---ceeeecCCcceeEEEeecCCC-ceeeccCCcceeeeecccccccc--------------------------cc
Confidence 6544 235688999999999999954 89999999999999999765421 24
Q ss_pred EeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--ecCceEEEEEcCCCCEEEEeeCCCeEE
Q psy9316 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--TKGENINITWAPNGNTIAVGNKEDLVT 231 (264)
Q Consensus 161 ~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~~~~~~~v~~sp~g~~la~gs~d~~i~ 231 (264)
|..|...+..+.|+|. ..++++|+.|+++++||+++.+..-.. ....+.+.+|+|++..+++|.++..-.
T Consensus 192 f~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~~ 263 (825)
T KOG0267|consen 192 FKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLSE 263 (825)
T ss_pred cccccccccccccCch-hhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhhh
Confidence 5778889999999985 468899999999999999987642222 234678899999999999999877653
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-15 Score=129.55 Aligned_cols=220 Identities=17% Similarity=0.283 Sum_probs=149.7
Q ss_pred EeecCCCeeEEEeec-CceEEecccccccc---ccccC-CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEE
Q psy9316 17 KLLPSGSQFHLVCKI-DDYVKHFNTHNDIK---EYQAH-GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~---~~~~h-~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~ 91 (264)
.|+|.+..+.++|+- +-+.+.++.....+ .|+.+ +..|.|++|.++|+. ++|..+|.|.||+..... .. ..
T Consensus 207 ~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~-~~--k~ 282 (626)
T KOG2106|consen 207 TFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKGTNR-IS--KQ 282 (626)
T ss_pred EeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCceEEEEeCCCce-EE--eE
Confidence 566777766655332 33333333333332 34443 467999999988876 488999999999854321 11 12
Q ss_pred EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc---------------------------------------
Q psy9316 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--------------------------------------- 132 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--------------------------------------- 132 (264)
...|.+.|.+++...++ .|+||+.|.+|..||-+..+..
T Consensus 283 ~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f 360 (626)
T KOG2106|consen 283 VHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF 360 (626)
T ss_pred eeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence 23899999999987543 4667999999999995432210
Q ss_pred --------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEE
Q psy9316 133 --------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 192 (264)
Q Consensus 133 --------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~i 192 (264)
..+++++.|+.+.+|+ ..+-... +.-..+..++.|+|.+ .+|.|...|...+
T Consensus 361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt-----~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWT-----KIIEDPAECADFHPSG--VVAVGTATGRWFV 432 (626)
T ss_pred eEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEE-----EEecCceeEeeccCcc--eEEEeeccceEEE
Confidence 0256677777778876 1111111 1223577888888865 7888888999999
Q ss_pred EeCCCCcceeE-eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcc
Q psy9316 193 WDARTQKSQII-ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRG 250 (264)
Q Consensus 193 wD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~ 250 (264)
.|.+++..... .....+..++|+|+|.+||+||.|+.|++|-+.....+..++....|
T Consensus 433 ~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 433 LDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred EecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence 99998664333 23445677999999999999999999999999987777766665544
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-15 Score=132.28 Aligned_cols=226 Identities=15% Similarity=0.213 Sum_probs=165.7
Q ss_pred EEEeecCceEEeccccc---cccccccC-CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEe
Q psy9316 26 HLVCKIDDYVKHFNTHN---DIKEYQAH-GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101 (264)
Q Consensus 26 ~~~~~~d~~~~~~~~~~---~~~~~~~h-~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~ 101 (264)
+.++..||+|.+|+... ....+.++ .+.|..|+|+ ++.+|++.+.+|.|..||+.+. .....++.-.+.+.+
T Consensus 40 lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l---k~~~~~d~~gg~IWs 115 (691)
T KOG2048|consen 40 LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL---KQKYNIDSNGGAIWS 115 (691)
T ss_pred eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC---ceeEEecCCCcceeE
Confidence 45678999999998754 34455665 4679999998 7788889999999999998752 222345666788999
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCCCCc---------------------ceEEEeecCCCcEEEEEeccCCCccceE-
Q psy9316 102 LCWHATNPDLLSTASGDKTVRIWDARTQKS---------------------QIMLASGSFDKSVAIFALDKKGDLNKEV- 159 (264)
Q Consensus 102 i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~- 159 (264)
++.+|.+ ..++.|+.||.++.++...++. ...++.|+.||.|++||...........
T Consensus 116 iai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~ 194 (691)
T KOG2048|consen 116 IAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM 194 (691)
T ss_pred EEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee
Confidence 9999866 5777899999777766654321 1237899999999999987654432100
Q ss_pred -EEec---cccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEE
Q psy9316 160 -VYRG---HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENINITWAPNGNTIAVGNKEDLVTFI 233 (264)
Q Consensus 160 -~~~~---h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~ 233 (264)
..+. -..-|.++.+- ....|++|...|+|++||...+.. ....+.+.+.+++-+++++.+.+++.|+.+.-|
T Consensus 195 ~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 195 QLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQY 272 (691)
T ss_pred cccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEE
Confidence 0010 11234555554 346899999999999999998874 334567789999999999999999999999888
Q ss_pred EcccCCCCCCCcccCcccceeeeee
Q psy9316 234 DVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 234 d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
-....-..++......+|.+++|++
T Consensus 273 ~~~~~~~~wv~~~~r~~h~hdvrs~ 297 (691)
T KOG2048|consen 273 SLTTNKSEWVINSRRDLHAHDVRSM 297 (691)
T ss_pred EecCCccceeeeccccCCcccceee
Confidence 8765443355556678999999985
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.7e-16 Score=135.01 Aligned_cols=216 Identities=22% Similarity=0.312 Sum_probs=151.7
Q ss_pred ecCCCeeEEEeecCceEEeccc----------cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCC--
Q psy9316 19 LPSGSQFHLVCKIDDYVKHFNT----------HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDL-- 86 (264)
Q Consensus 19 ~~~~~~~~~~~~~d~~~~~~~~----------~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~-- 86 (264)
.|+-++ .++|+.|++++.|+. .+.+.+|.+|.++|.|+...++++.+++||-||+|+.|++-.+...
T Consensus 303 ~~sep~-lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~d 381 (577)
T KOG0642|consen 303 HPSEPV-LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDD 381 (577)
T ss_pred CCCCCe-EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCccc
Confidence 344444 578999999999976 2346789999999999999999999999999999999976532211
Q ss_pred -----cccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCC--------
Q psy9316 87 -----NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKG-------- 153 (264)
Q Consensus 87 -----~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~-------- 153 (264)
.....+.+|++.|..+.+++.. +.|++++.||++++|+...... +.+-.....+....+|.....
T Consensus 382 s~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~ 459 (577)
T KOG0642|consen 382 SYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASF 459 (577)
T ss_pred ccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhc
Confidence 1123477999999999999755 5688999999999998754332 111111111111111110000
Q ss_pred -----------CccceEEEec-------cccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEEE
Q psy9316 154 -----------DLNKEVVYRG-------HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENINIT 213 (264)
Q Consensus 154 -----------~~~~~~~~~~-------h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~ 213 (264)
.......+.. -...++.+.++|.. .+.+++..|++|+++|..++.. ....+...+.+++
T Consensus 460 ~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsla 538 (577)
T KOG0642|consen 460 RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLA 538 (577)
T ss_pred ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceecccccccccchheeeccceeccee
Confidence 0000111110 11346778888865 6777899999999999999874 3456677788999
Q ss_pred EcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 214 WAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 214 ~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
+.|+|-+|++|+.|+.+.+|.....
T Consensus 539 i~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 539 IDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ecCCCceEEeecCCceeehhhccch
Confidence 9999999999999999999987543
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.9e-17 Score=139.93 Aligned_cols=181 Identities=23% Similarity=0.316 Sum_probs=136.2
Q ss_pred cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCC-CCeEEEEeCCCcE
Q psy9316 43 DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN-PDLLSTASGDKTV 121 (264)
Q Consensus 43 ~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~~l~s~s~dg~i 121 (264)
+..++.||.+-|+||.|+.+|.+|++||.|-.+.|||....+. ...+-.+|.+.|.++.|.|.. +.++++|..|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce--eeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 3457899999999999999999999999999999999763221 123345899999999999864 4688899999999
Q ss_pred EEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce
Q psy9316 122 RIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 201 (264)
Q Consensus 122 ~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~ 201 (264)
+++|+...+.. +.| .+.......+.+|+.+|..|+-.|.++..+-++++||+++-+|++.....
T Consensus 120 ~lfdl~~~~~~------~~d----------~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 120 KLFDLDSSKEG------GMD----------HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred EEEeccccccc------ccc----------cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence 99999864422 111 11111223457899999999999988899999999999999999864311
Q ss_pred eEe----------ec--CceEEEEEcCCC-CEEEEeeCCCeEEEEEcccCCCC
Q psy9316 202 IIA----------TK--GENINITWAPNG-NTIAVGNKEDLVTFIDVVKSLPP 241 (264)
Q Consensus 202 ~~~----------~~--~~~~~v~~sp~g-~~la~gs~d~~i~~~d~~~~~~~ 241 (264)
... .. -..-+++++|.. .+||+|+.|.++++||.+..+.+
T Consensus 184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks 236 (758)
T KOG1310|consen 184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKS 236 (758)
T ss_pred CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccC
Confidence 110 01 123468899966 57899999999999996654443
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-15 Score=129.48 Aligned_cols=185 Identities=22% Similarity=0.271 Sum_probs=140.7
Q ss_pred eEEecccccccc--ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCe
Q psy9316 34 YVKHFNTHNDIK--EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDL 111 (264)
Q Consensus 34 ~~~~~~~~~~~~--~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 111 (264)
.+..|+..++.+ .+.--.++|.||+-+|+|.+|+.|+-.|.|.+|.+.. |.+- -++.+|-.+|+++.|+- ++.+
T Consensus 62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL--~v~~aHYQ~ITcL~fs~-dgs~ 137 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILL--NVLSAHYQSITCLKFSD-DGSH 137 (476)
T ss_pred cccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecc-ccHH--HHHHhhccceeEEEEeC-CCcE
Confidence 445554433322 2223457899999999999999999999999999875 4332 23578999999999986 4578
Q ss_pred EEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCC-CCCEEEEEeCCCcE
Q psy9316 112 LSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT-NPDLLSTASGDKTV 190 (264)
Q Consensus 112 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~-~~~~i~s~~~dg~i 190 (264)
+++||.||.|.+|++-. ++.+..+. ...+...|..|+-+|..+...+. -...++|++.|.++
T Consensus 138 iiTgskDg~V~vW~l~~------lv~a~~~~-----------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~ 200 (476)
T KOG0646|consen 138 IITGSKDGAVLVWLLTD------LVSADNDH-----------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTI 200 (476)
T ss_pred EEecCCCccEEEEEEEe------ecccccCC-----------CccceeeeccCcceeEEEEecCCCccceEEEecCCceE
Confidence 88999999999999742 22332222 12233457889999999887764 23578899999999
Q ss_pred EEEeCCCCccee-EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 191 RIWDARTQKSQI-IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 191 ~iwD~~t~~~~~-~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
++||+..+.... ...+..+.+++.+|.+..+.+|+.+|.|.+.+..+..
T Consensus 201 k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~ 250 (476)
T KOG0646|consen 201 KLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS 250 (476)
T ss_pred EEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCC
Confidence 999999998643 4457778899999999999999999999999987644
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-15 Score=127.74 Aligned_cols=181 Identities=17% Similarity=0.232 Sum_probs=131.1
Q ss_pred CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
.+.|+++.|+|....|++|+.|+++++|.++...+. ....+.--..++.+.+|.|.+...++++++...++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 568999999999999999999999999998743221 1111223356799999999887688899999999999998764
Q ss_pred cc----------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCC
Q psy9316 131 SQ----------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 188 (264)
Q Consensus 131 ~~----------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg 188 (264)
.. ..+++.+..|-|.+....+. .+. .. ....+.|..++|++++ ..|++++.+|
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~-eli--~s-~KieG~v~~~~fsSds-k~l~~~~~~G 366 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK-ELI--TS-FKIEGVVSDFTFSSDS-KELLASGGTG 366 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh-hhh--he-eeeccEEeeEEEecCC-cEEEEEcCCc
Confidence 21 13455555555555432211 000 01 1234678899999654 6666678899
Q ss_pred cEEEEeCCCCcceeEeec-Cc--eEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 189 TVRIWDARTQKSQIIATK-GE--NINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 189 ~i~iwD~~t~~~~~~~~~-~~--~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.|.+||++...+...... +. ..+++.|++|.|||+||+.|.|+|||-..
T Consensus 367 eV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred eEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 999999999876544433 33 45788999999999999999999999554
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.7e-16 Score=130.41 Aligned_cols=170 Identities=25% Similarity=0.391 Sum_probs=135.6
Q ss_pred cccccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCC----cccEEEecccccEEeEEEecCCCCeEEEEeC
Q psy9316 43 DIKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDL----NKEVVYRGHTGSVDQLCWHATNPDLLSTASG 117 (264)
Q Consensus 43 ~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~ 117 (264)
..-.+.+|+++|..++|+| +...||+||.|-+|.||++-.++-. .....+.+|...|--+.|||.-.+.|+|++.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 3456789999999999999 6678999999999999998654421 1234478999999999999998899999999
Q ss_pred CCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q psy9316 118 DKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197 (264)
Q Consensus 118 dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t 197 (264)
|.+|.+||+.+++..+ + ..|.+.|.+++|+- ++.++++.+.|..|+|||.++
T Consensus 153 Dn~v~iWnv~tgeali--------------------------~-l~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALI--------------------------T-LDHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred CceEEEEeccCCceee--------------------------e-cCCCCeEEEEEecc-CCceeeeecccceeEEEcCCC
Confidence 9999999998876431 1 13888999999986 567899999999999999999
Q ss_pred CcceeEe--ecC-ceEEEEEcCCCCEEEEe---eCCCeEEEEEcccCCC
Q psy9316 198 QKSQIIA--TKG-ENINITWAPNGNTIAVG---NKEDLVTFIDVVKSLP 240 (264)
Q Consensus 198 ~~~~~~~--~~~-~~~~v~~sp~g~~la~g---s~d~~i~~~d~~~~~~ 240 (264)
++..... +.+ ....+-|--+|+.+.+| .++..+-+||......
T Consensus 205 ~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 205 GTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred CcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccC
Confidence 8853332 333 35677888899977777 4578899999776433
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-15 Score=127.12 Aligned_cols=220 Identities=17% Similarity=0.244 Sum_probs=156.6
Q ss_pred EeecCCC-eeEEEeecCceEEecccc------ccccccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCcc
Q psy9316 17 KLLPSGS-QFHLVCKIDDYVKHFNTH------NDIKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNK 88 (264)
Q Consensus 17 ~~~~~~~-~~~~~~~~d~~~~~~~~~------~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~ 88 (264)
+|+|+-. .+.+++..-|.|-.|+.+ ..+..|..|.++|.+|.|+| +-..|++.|+||+|+.-|++.. ..+.
T Consensus 193 ~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~-i~e~ 271 (498)
T KOG4328|consen 193 AFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN-ISEE 271 (498)
T ss_pred EecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecch-hhHH
Confidence 5556654 444556667788887663 34566889999999999999 6678999999999999998642 2222
Q ss_pred cEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc---------------------ceEEEeecCCCcEEEE
Q psy9316 89 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---------------------QIMLASGSFDKSVAIF 147 (264)
Q Consensus 89 ~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---------------------~~~~~~~~~d~~i~i~ 147 (264)
....+.-...+..+.|+..+. .++.+..=|...+||+++... ...+++++.|++..||
T Consensus 272 v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIW 350 (498)
T KOG4328|consen 272 VLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIW 350 (498)
T ss_pred HhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeee
Confidence 111222344566677776554 444566667999999987542 2258999999999999
Q ss_pred EeccCCCcc-ceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCC---CCcc--eeEeecC------ceEEEEEc
Q psy9316 148 ALDKKGDLN-KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR---TQKS--QIIATKG------ENINITWA 215 (264)
Q Consensus 148 ~~~~~~~~~-~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~---t~~~--~~~~~~~------~~~~v~~s 215 (264)
|++.-+.-. +......|...|.+..|+|.++. |++.|.|..|+|||.. +..+ ....+.. ......|.
T Consensus 351 D~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~ 429 (498)
T KOG4328|consen 351 DLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWD 429 (498)
T ss_pred ehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeC
Confidence 987422211 23344578899999999998877 7888999999999995 2221 1222221 13467899
Q ss_pred CCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 216 PNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 216 p~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
|+.+++++|.--.-|-|||-+.++
T Consensus 430 P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 430 PDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred CCccEEEEeccCcceeEEcCCCCE
Confidence 999999999999999999977644
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.2e-14 Score=118.11 Aligned_cols=228 Identities=12% Similarity=0.134 Sum_probs=144.9
Q ss_pred EeecCCCCCc-eEeecCCCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEE-ECCCcEEEEEec
Q psy9316 6 IQFHTPKSPE-YKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASG-SFDKSVAIFALD 81 (264)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~-s~dg~i~v~~~~ 81 (264)
..|.....+. ..+.|.+..+.+++..++.++.|+.. +.+..+..+.. +..+.|+|+++.++.+ +.|+.+++||+.
T Consensus 25 ~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~ 103 (300)
T TIGR03866 25 RTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIE 103 (300)
T ss_pred EEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 3444344343 36666666544556778888888764 34444544433 5678999999988665 568999999986
Q ss_pred cCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCC-cEEEEECCCCCc-------------------ceEEEeecCC
Q psy9316 82 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK-TVRIWDARTQKS-------------------QIMLASGSFD 141 (264)
Q Consensus 82 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg-~i~vwd~~~~~~-------------------~~~~~~~~~d 141 (264)
... ....+. +...+.+++|+|++ .++++++.++ .+.+||.++.+. ..+++++..+
T Consensus 104 ~~~---~~~~~~-~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 104 TRK---VLAEIP-VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred CCe---EEeEee-CCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC
Confidence 421 111222 22346788999855 5666666654 567788865431 1123455568
Q ss_pred CcEEEEEeccCCCccceEEEec---cccc--eeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE-eecCceEEEEEc
Q psy9316 142 KSVAIFALDKKGDLNKEVVYRG---HTGS--VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII-ATKGENINITWA 215 (264)
Q Consensus 142 ~~i~i~~~~~~~~~~~~~~~~~---h~~~--i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~s 215 (264)
+.+.+|++........ ..+.. +... ...++|+|++..++++.+.++.+.+||+++.+.... .....+..++|+
T Consensus 179 ~~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 257 (300)
T TIGR03866 179 GTVSVIDVATRKVIKK-ITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFT 257 (300)
T ss_pred CEEEEEEcCcceeeee-eeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEEC
Confidence 8999999865322111 11111 1111 235788887655566666778899999998765332 234457789999
Q ss_pred CCCCEEEEe-eCCCeEEEEEcccCCC
Q psy9316 216 PNGNTIAVG-NKEDLVTFIDVVKSLP 240 (264)
Q Consensus 216 p~g~~la~g-s~d~~i~~~d~~~~~~ 240 (264)
|+|++|+++ ..++.|.+||+..+..
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 999999876 4689999999886443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=130.69 Aligned_cols=183 Identities=21% Similarity=0.292 Sum_probs=143.8
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec--ccccEEeEEEecCCCCeEEEEeCCCcEEEEEC
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG--HTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 126 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~ 126 (264)
.|..-|.++.++...+++++|+. |-|+|||+...+.......+.+ ....+..+...|++ +.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg-rtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG-RTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCC-ceEEeccccceeeeeec
Confidence 68888999999999999999987 6699999987665443333333 34558888888855 77788999999999999
Q ss_pred CCCCcc---------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEe
Q psy9316 127 RTQKSQ---------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS 185 (264)
Q Consensus 127 ~~~~~~---------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~ 185 (264)
...... .+..++..||.|.|||+.... ...+|.+|++++.+|..+++ +..|=||+
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~---~VrqfqGhtDGascIdis~d-GtklWTGG 570 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT---LVRQFQGHTDGASCIDISKD-GTKLWTGG 570 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce---eeecccCCCCCceeEEecCC-CceeecCC
Confidence 764311 134567789999999996532 23467899999999999875 45667999
Q ss_pred CCCcEEEEeCCCCcce-eEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 186 GDKTVRIWDARTQKSQ-IIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 186 ~dg~i~iwD~~t~~~~-~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
-|++|+-||++.+... .......+.++.++|.+.+||+|=.++.+.+.-+++
T Consensus 571 lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred CccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 9999999999988742 223345689999999999999999999999988764
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-15 Score=121.93 Aligned_cols=211 Identities=18% Similarity=0.252 Sum_probs=144.5
Q ss_pred ecCCCeeEEEeecCceEEecccc-ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEecc--CCCC---cccEEE
Q psy9316 19 LPSGSQFHLVCKIDDYVKHFNTH-NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDK--KGDL---NKEVVY 92 (264)
Q Consensus 19 ~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~--~~~~---~~~~~~ 92 (264)
++.++.++++|+.|..|-+|... ..+.........-+..+.+|+|++|++++.--.+++|++-- .+.. ...+.+
T Consensus 195 iA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L 274 (420)
T KOG2096|consen 195 IAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL 274 (420)
T ss_pred ecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee
Confidence 45678888999999999888764 34445555555566788999999999999999999998542 2222 233557
Q ss_pred ecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC----CcceEEEeecCCCcEEEEEeccCCCccceEEEeccccce
Q psy9316 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ----KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV 168 (264)
Q Consensus 93 ~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~----~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i 168 (264)
++|.+.|...+|++.. ..+++.|.||++++||.+-. +...++-.| .. .....-..++
T Consensus 275 kGH~saV~~~aFsn~S-~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g---------------~~---pl~aag~~p~ 335 (420)
T KOG2096|consen 275 KGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEG---------------SA---PLHAAGSEPV 335 (420)
T ss_pred ccchhheeeeeeCCCc-ceeEEEecCCcEEEeeccceEecCCCchHhhcC---------------Cc---chhhcCCCce
Confidence 8999999999999854 67889999999999998642 111111000 00 0001111233
Q ss_pred eeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee---EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCc
Q psy9316 169 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI---IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERT 245 (264)
Q Consensus 169 ~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~---~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~ 245 (264)
.+..+|. ++.|+. +....+++|..++++... ..+...+.+++|+++|+++++++ |..++++.-. +..+.+.
T Consensus 336 -RL~lsP~-g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~nt--pg~~~~V 409 (420)
T KOG2096|consen 336 -RLELSPS-GDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNT--PGWHSRV 409 (420)
T ss_pred -EEEeCCC-CcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCC--CchhhHH
Confidence 5777885 456554 557799999999876422 23455688999999999999998 8888988622 2334455
Q ss_pred ccCccccee
Q psy9316 246 LTSRGHLME 254 (264)
Q Consensus 246 ~~~~~h~~~ 254 (264)
..+.+|.-+
T Consensus 410 ~~~~~~l~~ 418 (420)
T KOG2096|consen 410 VKLNRELPE 418 (420)
T ss_pred HHhhccccc
Confidence 556666544
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.9e-15 Score=120.54 Aligned_cols=175 Identities=17% Similarity=0.288 Sum_probs=121.1
Q ss_pred EEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce
Q psy9316 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI 133 (264)
Q Consensus 54 V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 133 (264)
..|+.|++-|.+||.|+.||.|.+||+.+-. ....+.+|..+|.+++|++++ ++|+++|.|..+++||+..+....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc---hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCcee
Confidence 6899999999999999999999999998643 233477999999999999855 889999999999999998875332
Q ss_pred EEEe-------------------ecCCCcEEEEEeccCCCccceEEEe----cc-ccceeeEEEcCCCCCEEEEEeCCCc
Q psy9316 134 MLAS-------------------GSFDKSVAIFALDKKGDLNKEVVYR----GH-TGSVDQLCWHATNPDLLSTASGDKT 189 (264)
Q Consensus 134 ~~~~-------------------~~~d~~i~i~~~~~~~~~~~~~~~~----~h-~~~i~~i~~~~~~~~~i~s~~~dg~ 189 (264)
-+.- .-.+....+.+++.. ....+. +. ...-....|.+ .+++|++|...|.
T Consensus 102 rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~----~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGk 176 (405)
T KOG1273|consen 102 RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP----KHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGK 176 (405)
T ss_pred EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCC----ceeeccCCCccccccccccccccC-CCCEEEEecCcce
Confidence 2111 111111112221110 000000 00 00011113443 5679999999999
Q ss_pred EEEEeCCCCcceeE--eec-CceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 190 VRIWDARTQKSQII--ATK-GENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 190 i~iwD~~t~~~~~~--~~~-~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
+.++|.++.++... ... ..+-.+-++-.|+.|++-++|++|+.|+.++
T Consensus 177 llv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred EEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 99999999875221 112 3455688999999999999999999999874
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-14 Score=131.93 Aligned_cols=180 Identities=23% Similarity=0.331 Sum_probs=139.3
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCC
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~ 128 (264)
.|.+..+.++|.|+|++|.+++.||.|++|+...... ....+.-+...|.+++- ...+|++|+.+++|.+|.+.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e--~P~ti~~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE--EPETIDISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc--CCchhhccCceeEEEee---cccceEEeeccceEEEeeCCC
Confidence 7888899999999999999999999999998764422 11223336677777765 335788999999999999877
Q ss_pred CCcc-------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCc
Q psy9316 129 QKSQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 189 (264)
Q Consensus 129 ~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~ 189 (264)
.... .+++.|+.|-.|++..+.. ...+..+++|.++|.++.|+|. +.++|+.+.||.
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D---~s~~~~lrgh~apVl~l~~~p~-~~fLAvss~dG~ 161 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD---SSQEKVLRGHDAPVLQLSYDPK-GNFLAVSSCDGK 161 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccc---cchheeecccCCceeeeeEcCC-CCEEEEEecCce
Confidence 6532 1467788888888876543 3345678999999999999995 579999999999
Q ss_pred EEEEeCCCCcceeEee----------cCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 190 VRIWDARTQKSQIIAT----------KGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 190 i~iwD~~t~~~~~~~~----------~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
|++||+.++....... ...+..++|+|+|..+|+.+.|+.|.+|+...
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 9999999877422111 11234689999999999999999999998654
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=124.84 Aligned_cols=217 Identities=16% Similarity=0.262 Sum_probs=156.1
Q ss_pred EeecCCCeeEEEeecCceEEeccc----cccccccccCCCCEEEEEECCCCC-eEEEEECCCcEEEEEeccCCCC-----
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT----HNDIKEYQAHGSKVHSVAWSCDGR-RLASGSFDKSVAIFALDKKGDL----- 86 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~~~~h~~~V~~l~~s~~g~-~l~s~s~dg~i~v~~~~~~~~~----- 86 (264)
+|.|+. +++++|+.|+.+++|-. .+.++.+..-+.+|.+..|.|+|+ .+++++.-.-+..||+.+.+..
T Consensus 220 ~FHp~~-plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~ 298 (514)
T KOG2055|consen 220 QFHPTA-PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP 298 (514)
T ss_pred EecCCC-ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC
Confidence 555766 57889999999999854 345555656678999999999999 9999999999999998742100
Q ss_pred ---c-------------ccEEEec--------------------ccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 87 ---N-------------KEVVYRG--------------------HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 87 ---~-------------~~~~~~~--------------------h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
+ ....+.+ .++.|.+++|+.++ ..|++++.+|.|.+||++...
T Consensus 299 ~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 299 YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNS 377 (514)
T ss_pred CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcc
Confidence 0 0001111 25678999999655 666677889999999998754
Q ss_pred c--------------------ceEEEeecCCCcEEEEEeccCC---CccceEEEeccccceeeEEEcCCCCCEEE--EEe
Q psy9316 131 S--------------------QIMLASGSFDKSVAIFALDKKG---DLNKEVVYRGHTGSVDQLCWHATNPDLLS--TAS 185 (264)
Q Consensus 131 ~--------------------~~~~~~~~~d~~i~i~~~~~~~---~~~~~~~~~~h~~~i~~i~~~~~~~~~i~--s~~ 185 (264)
. ..++++|+..|.+.||+.+... .-.+...+..-...|+.+.|+++ ..+++ |-.
T Consensus 378 ~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d-~qiLAiaS~~ 456 (514)
T KOG2055|consen 378 CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD-AQILAIASRV 456 (514)
T ss_pred eEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc-hhhhhhhhhc
Confidence 2 2368999999999999965322 11122234455678999999985 45544 444
Q ss_pred CCCcEEEEeCCCCcceeE-----eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 186 GDKTVRIWDARTQKSQII-----ATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 186 ~dg~i~iwD~~t~~~~~~-----~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.+..+++--+.+...... ..-+++.+++|||.|-+||+|...|.+.+|.+.
T Consensus 457 ~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 457 KKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 678888887766543111 123568899999999999999999999999863
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=125.29 Aligned_cols=212 Identities=18% Similarity=0.232 Sum_probs=156.8
Q ss_pred ceEeecCCCeeEEEeecCceEEeccccccccccc----cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccE
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQ----AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV 90 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~ 90 (264)
.+.|+|.|-. +++++.-..+.+|+.-....++. ...-...+|+.+||.+..+++..||.|.|||+... ....
T Consensus 470 SckL~pdgrt-LivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq---~~Vr 545 (705)
T KOG0639|consen 470 SCKLLPDGRT-LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ---TLVR 545 (705)
T ss_pred eeEecCCCce-EEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc---eeee
Confidence 3467777754 46777778888887643332222 12234678889999999999999999999999742 2234
Q ss_pred EEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc------------------eEEEeecCCCcEEEEEeccC
Q psy9316 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ------------------IMLASGSFDKSVAIFALDKK 152 (264)
Q Consensus 91 ~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------------------~~~~~~~~d~~i~i~~~~~~ 152 (264)
.+++|.+.+.||..++++ ..|-+|+-|.+||.||++.+... ..++.|=.++.+.+..-+
T Consensus 546 qfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s-- 622 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-- 622 (705)
T ss_pred cccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC--
Confidence 588999999999998755 67779999999999999876421 134555555555544322
Q ss_pred CCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee-cCceEEEEEcCCCCEEEEeeCCCeEE
Q psy9316 153 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT-KGENINITWAPNGNTIAVGNKEDLVT 231 (264)
Q Consensus 153 ~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~-~~~~~~v~~sp~g~~la~gs~d~~i~ 231 (264)
+ .....+..|.+-|-++.|.+. +.+++|.+.|+.+..|-.--+...++.. ...+.++++|-|++|+++||.|....
T Consensus 623 k--p~kyqlhlheScVLSlKFa~c-GkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 623 K--PEKYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred C--ccceeecccccEEEEEEeccc-CceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceE
Confidence 1 122356778899999999985 5788999999999999777665544433 35689999999999999999999999
Q ss_pred EEEcc
Q psy9316 232 FIDVV 236 (264)
Q Consensus 232 ~~d~~ 236 (264)
+|.+.
T Consensus 700 VYeV~ 704 (705)
T KOG0639|consen 700 VYEVI 704 (705)
T ss_pred EEEEe
Confidence 99763
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-15 Score=131.69 Aligned_cols=161 Identities=26% Similarity=0.452 Sum_probs=130.5
Q ss_pred CCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCC----cccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEE
Q psy9316 50 HGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDL----NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124 (264)
Q Consensus 50 h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vw 124 (264)
++..|+++.|+| |.++|+.|+.||.|++|-+..++-. ..+.++..|...|..+.|||--.+.|++++.|.+|++|
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 456799999999 8999999999999999998765422 22356788999999999999888899999999999999
Q ss_pred ECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe
Q psy9316 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA 204 (264)
Q Consensus 125 d~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~ 204 (264)
|+.+.+.. ..+.+|++.|..++|+|+ +..+++.|.||+|++|+.++.+..+..
T Consensus 706 Dl~~~~~~--------------------------~~l~gHtdqIf~~AWSpd-Gr~~AtVcKDg~~rVy~Prs~e~pv~E 758 (1012)
T KOG1445|consen 706 DLANAKLY--------------------------SRLVGHTDQIFGIAWSPD-GRRIATVCKDGTLRVYEPRSREQPVYE 758 (1012)
T ss_pred ehhhhhhh--------------------------heeccCcCceeEEEECCC-CcceeeeecCceEEEeCCCCCCCcccc
Confidence 99875532 235789999999999995 578999999999999999998765554
Q ss_pred ecC----ceEEEEEcCCCCEEEEeeC----CCeEEEEEccc
Q psy9316 205 TKG----ENINITWAPNGNTIAVGNK----EDLVTFIDVVK 237 (264)
Q Consensus 205 ~~~----~~~~v~~sp~g~~la~gs~----d~~i~~~d~~~ 237 (264)
.++ ....|.|.-+|+++++.+= .+.|.+||..+
T Consensus 759 g~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 759 GKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 433 3457899999999977643 44577787654
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-14 Score=116.66 Aligned_cols=172 Identities=22% Similarity=0.385 Sum_probs=126.3
Q ss_pred CeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecC-CCCeEEEEeCCCcEEEEECCCCCcc----------
Q psy9316 64 RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT-NPDLLSTASGDKTVRIWDARTQKSQ---------- 132 (264)
Q Consensus 64 ~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~---------- 132 (264)
..++++...|+|++||..+.+.. ..++++...+..+.|... .++.+.+++.||+|++||+|+....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l---~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL---EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh---heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 56888999999999997763333 347778888888888754 5688999999999999999875321
Q ss_pred ---e---------EEEeec----CCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCC
Q psy9316 133 ---I---------MLASGS----FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 196 (264)
Q Consensus 133 ---~---------~~~~~~----~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~ 196 (264)
. ++++|. .+-.+.+||.+....... .....|.+-|++++|+|.++++++||+.||-|.+||++
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~-~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLR-QLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhh-hhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 1 222332 234577899987655211 12357999999999999999999999999999999998
Q ss_pred CCcc--ee---EeecCceEEEEEcCCC-CEEEEeeCCCeEEEEEcccCC
Q psy9316 197 TQKS--QI---IATKGENINITWAPNG-NTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 197 t~~~--~~---~~~~~~~~~v~~sp~g-~~la~gs~d~~i~~~d~~~~~ 239 (264)
.... .+ .-+...+..+.|.-++ +.+.+-+......+|+++.+-
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 6532 11 1122346778998766 457777888899999998755
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-13 Score=114.89 Aligned_cols=105 Identities=25% Similarity=0.403 Sum_probs=82.6
Q ss_pred eEEEeecCceEEecccc-----------ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEecc-----------
Q psy9316 25 FHLVCKIDDYVKHFNTH-----------NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDK----------- 82 (264)
Q Consensus 25 ~~~~~~~d~~~~~~~~~-----------~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~----------- 82 (264)
++.+|+.|..+++|... +....+..|...|+++.|+|+|+.|++|+.+|.+.+|....
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 56678889999998431 12345678999999999999999999999999999997651
Q ss_pred --CCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 83 --KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 83 --~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
++......+..+|...+.+++|.|++ +++++++.|..+++||+..+.
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccce
Confidence 01111113456899999999999855 788999999999999998754
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.9e-14 Score=124.86 Aligned_cols=212 Identities=22% Similarity=0.371 Sum_probs=150.6
Q ss_pred CceEeecCCCeeEEEeecCceEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR 93 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~ 93 (264)
.|..+-|.|+++.+.+.-.-++..-+.+..+.++++|++-|.|++|+.||+++++|+.|+.+.+|+-...+. ...
T Consensus 16 ~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-----LkY 90 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-----LKY 90 (1081)
T ss_pred heeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-----eee
Confidence 566888999997554332223333345678899999999999999999999999999999999997544332 234
Q ss_pred cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC-----------------CcceEEEeecCCCcEEEEEeccCCCcc
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ-----------------KSQIMLASGSFDKSVAIFALDKKGDLN 156 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~-----------------~~~~~~~~~~~d~~i~i~~~~~~~~~~ 156 (264)
.|++.|.|+.|+|-. +.+++++-. ..-+|..... ....+++.|-.+|+|.|.. ..++..
T Consensus 91 SH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN--k~gEek 166 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN--KNGEEK 166 (1081)
T ss_pred ccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec--CCCCcc
Confidence 799999999999976 556665532 2334543211 0123678888999998873 222211
Q ss_pred -ceEEEeccccceeeEEEcCCCC----CEEEEEeCCCcEEEEeCCCCccee-EeecCceEEEEEcCCCCEEEEeeCCCeE
Q psy9316 157 -KEVVYRGHTGSVDQLCWHATNP----DLLSTASGDKTVRIWDARTQKSQI-IATKGENINITWAPNGNTIAVGNKEDLV 230 (264)
Q Consensus 157 -~~~~~~~h~~~i~~i~~~~~~~----~~i~s~~~dg~i~iwD~~t~~~~~-~~~~~~~~~v~~sp~g~~la~gs~d~~i 230 (264)
.+....+..++|..++|+|..+ ++++...+..++.++.+..+.... ....-.+.++.+-|+|.|+..|+.|+.+
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCce
Confidence 1111235678999999999643 578888999999999887654321 2223356789999999999999999999
Q ss_pred EEEE
Q psy9316 231 TFID 234 (264)
Q Consensus 231 ~~~d 234 (264)
.+|.
T Consensus 247 ~~fT 250 (1081)
T KOG1538|consen 247 SLFT 250 (1081)
T ss_pred EEEe
Confidence 9997
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-14 Score=116.73 Aligned_cols=183 Identities=23% Similarity=0.431 Sum_probs=126.1
Q ss_pred EeecCceEEeccc--ccccccccc--CCC---CEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccE--EE---ecc
Q psy9316 28 VCKIDDYVKHFNT--HNDIKEYQA--HGS---KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV--VY---RGH 95 (264)
Q Consensus 28 ~~~~d~~~~~~~~--~~~~~~~~~--h~~---~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~--~~---~~h 95 (264)
+.+-|.=|++|+. ++.-..|.+ |.+ ...+|+|+|||.+|+.| ....|++||+..++...... .. .++
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 3445666777754 333233332 332 35789999999999876 67899999997666432211 11 134
Q ss_pred cccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcC
Q psy9316 96 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 175 (264)
Q Consensus 96 ~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~ 175 (264)
.+-+.+++|+|.+...++.|+.-..+-+|.-..+. ....+.+|.++|+.++|++
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~--------------------------pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR--------------------------PLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCC--------------------------ceeeecccCCCeeeEEecc
Confidence 67788899999888788888876666555433221 1123458999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcceeEeec---C-ceEE--EEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 176 TNPDLLSTASGDKTVRIWDARTQKSQIIATK---G-ENIN--ITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 176 ~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~---~-~~~~--v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
++..++.-+-.|-.|..||++.....+.... + ...+ ++..|+|++||+|+.||.|++||+.+
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 8766665555688999999997654332222 1 2223 56679999999999999999999887
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-13 Score=122.69 Aligned_cols=185 Identities=20% Similarity=0.315 Sum_probs=134.1
Q ss_pred ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecc-cccEEeEEEecCCCCeEEEEeCCCcEEEE
Q psy9316 46 EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH-TGSVDQLCWHATNPDLLSTASGDKTVRIW 124 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~~~~l~s~s~dg~i~vw 124 (264)
.+.--.+.|.+++|+.+.+.||.+=.||.|.+|++.. .... ..++.++ ...|.+++|.+ + ..|+|.+-+|.|.-|
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~-~w~~-~~vi~g~~drsIE~L~W~e-~-~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN-NWFL-EPVIHGPEDRSIESLAWAE-G-GRLFSSGLSGSITEW 95 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCC-Ccee-eEEEecCCCCceeeEEEcc-C-CeEEeecCCceEEEE
Confidence 3444467899999999999999999999999999865 2222 2334444 56799999984 3 466788999999999
Q ss_pred ECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE-
Q psy9316 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII- 203 (264)
Q Consensus 125 d~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~- 203 (264)
|+.+.+...- .......|.+++.+|.+ ..++.||.||.+++++...++....
T Consensus 96 Dl~~lk~~~~--------------------------~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r 148 (691)
T KOG2048|consen 96 DLHTLKQKYN--------------------------IDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKR 148 (691)
T ss_pred ecccCceeEE--------------------------ecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEe
Confidence 9987553211 11223578889999865 6777889999888888888764332
Q ss_pred ---eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccce-eeeeeccc
Q psy9316 204 ---ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLM-ETRSLWGT 261 (264)
Q Consensus 204 ---~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~-~~~~~~~~ 261 (264)
...+++.+++|+|++..++.||.||+|++||+..+...+--.+..++=.- +-+.||+.
T Consensus 149 ~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv 210 (691)
T KOG2048|consen 149 SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSV 210 (691)
T ss_pred ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEE
Confidence 23467999999999999999999999999999876665522222222112 45667764
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-13 Score=121.85 Aligned_cols=221 Identities=18% Similarity=0.269 Sum_probs=154.4
Q ss_pred EeecCCCeeEEEeecCceEEecccccccc--------ccccCCCCEEEEEECCCCCe--EEEEECCCcEEEEEeccCCCC
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIK--------EYQAHGSKVHSVAWSCDGRR--LASGSFDKSVAIFALDKKGDL 86 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~h~~~V~~l~~s~~g~~--l~s~s~dg~i~v~~~~~~~~~ 86 (264)
.+.|-..++.+.+..+|.|-.|+....-. .-..|..++..+.|..+... +++++.||.|..|+++.-...
T Consensus 249 ~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P 328 (555)
T KOG1587|consen 249 KFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLP 328 (555)
T ss_pred EeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccc
Confidence 45566666666788899998887643322 12368889999999875554 999999999999987632110
Q ss_pred cccEE--Ee-------cccccEEeEEEecCCCCeEEEEeCCCcEEEE---ECCCCCc-----c-----------------
Q psy9316 87 NKEVV--YR-------GHTGSVDQLCWHATNPDLLSTASGDKTVRIW---DARTQKS-----Q----------------- 132 (264)
Q Consensus 87 ~~~~~--~~-------~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vw---d~~~~~~-----~----------------- 132 (264)
..... .. .....++.+.|.+.+++.++.|+..|.|.-- +.+.... .
T Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nP 408 (555)
T KOG1587|consen 329 VEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNP 408 (555)
T ss_pred hhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCC
Confidence 00000 01 1234588899999999999999999999773 3332220 0
Q ss_pred ---eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe---ec
Q psy9316 133 ---IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA---TK 206 (264)
Q Consensus 133 ---~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~---~~ 206 (264)
..+.+++ |..++||..... ..+...+..+.+.+.+++|+|..+.+|+++..||.+.|||+......... ..
T Consensus 409 F~~k~fls~g-DW~vriWs~~~~--~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~ 485 (555)
T KOG1587|consen 409 FYPKNFLSVG-DWTVRIWSEDVI--ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC 485 (555)
T ss_pred Cccceeeeec-cceeEeccccCC--CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc
Confidence 1234444 999999986521 12223345666779999999999999999999999999999876532211 11
Q ss_pred -CceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 207 -GENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 207 -~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
.....+.|+++|+.|++|...|.+.+|++..++.
T Consensus 486 ~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~ 520 (555)
T KOG1587|consen 486 SPALTRVRWSPNGKLLAVGDANGTTHILKLSESLA 520 (555)
T ss_pred ccccceeecCCCCcEEEEecCCCcEEEEEcCchhh
Confidence 2345688999999999999999999999976443
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.7e-14 Score=125.17 Aligned_cols=182 Identities=20% Similarity=0.396 Sum_probs=130.0
Q ss_pred CceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCccc-EEEecccccEEeEEEecCC
Q psy9316 32 DDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE-VVYRGHTGSVDQLCWHATN 108 (264)
Q Consensus 32 d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~-~~~~~h~~~v~~i~~~~~~ 108 (264)
...|++|++. .....+.+|.-.|+.|+|||||++|+++|.|.++.+|+.......... ...+.|+.-|.++.|+|+.
T Consensus 551 hAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 551 HAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred ceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc
Confidence 4467888774 456678899999999999999999999999999999987543221111 1256899999999999955
Q ss_pred CCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCC----CCEEEEE
Q psy9316 109 PDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN----PDLLSTA 184 (264)
Q Consensus 109 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~----~~~i~s~ 184 (264)
++++++|+|++|++|.........+. + .....+...|++++|.|.. .+.++.|
T Consensus 631 -~~FaTaSRDK~VkVW~~~~~~d~~i~---------------------~-~a~~~~~~aVTAv~~~~~~~~e~~~~vavG 687 (764)
T KOG1063|consen 631 -KYFATASRDKKVKVWEEPDLRDKYIS---------------------R-FACLKFSLAVTAVAYLPVDHNEKGDVVAVG 687 (764)
T ss_pred -ceeEEecCCceEEEEeccCchhhhhh---------------------h-hchhccCCceeeEEeeccccccccceEEEE
Confidence 67999999999999998765322110 0 0112355688888888753 3478889
Q ss_pred eCCCcEEEEeCC-CCcc-------------eeEeecCceEEEEEcCC--------C--CEEEEeeCCCeEEEEEcc
Q psy9316 185 SGDKTVRIWDAR-TQKS-------------QIIATKGENINITWAPN--------G--NTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 185 ~~dg~i~iwD~~-t~~~-------------~~~~~~~~~~~v~~sp~--------g--~~la~gs~d~~i~~~d~~ 236 (264)
-+.|.|.+|... ..+. ....+...+..+.|.|- . ..|++|+.|..++++++.
T Consensus 688 le~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 688 LEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 999999999854 1110 00111234567889864 2 356999999999999864
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.8e-13 Score=120.26 Aligned_cols=229 Identities=17% Similarity=0.264 Sum_probs=162.9
Q ss_pred EEEeecCceEEecc--ccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEE
Q psy9316 26 HLVCKIDDYVKHFN--THNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103 (264)
Q Consensus 26 ~~~~~~d~~~~~~~--~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~ 103 (264)
.+.++.+|.+++|+ +++.+.+|+++.+.|+++.-+|-=+.++.|..+|+|.++++..++. ...++..-+.|+.++
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki---l~sFk~d~g~VtslS 251 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI---LMSFKQDWGRVTSLS 251 (910)
T ss_pred EEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcE---EEEEEccccceeEEE
Confidence 34578888888875 4678899999999999999999999999999999999999875432 223443358999999
Q ss_pred EecCCCCeEEEEeCCCcEEEEECCCCCcc--------------------eEEEeecCCCcEEEEEeccCCCccceEE-Ee
Q psy9316 104 WHATNPDLLSTASGDKTVRIWDARTQKSQ--------------------IMLASGSFDKSVAIFALDKKGDLNKEVV-YR 162 (264)
Q Consensus 104 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~-~~ 162 (264)
|..++..++++|+..|.+-+||++..+.. ..+++.+.|.++++|..++..-..+... -.
T Consensus 252 FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~ 331 (910)
T KOG1539|consen 252 FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG 331 (910)
T ss_pred eccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc
Confidence 98888788889989999999999875421 2467788899999888764322222221 23
Q ss_pred ccccceeeEEEcCCCCCEEEEEeCCCcEEEE-------------------------------------------------
Q psy9316 163 GHTGSVDQLCWHATNPDLLSTASGDKTVRIW------------------------------------------------- 193 (264)
Q Consensus 163 ~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iw------------------------------------------------- 193 (264)
+|.+|-.+|.|.-.++..+.+++.|++++.+
T Consensus 332 GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W 411 (910)
T KOG1539|consen 332 GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEW 411 (910)
T ss_pred CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhh
Confidence 5666655555554444455555555555444
Q ss_pred ----------------eCCCCcc-e-eEee------cCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCc
Q psy9316 194 ----------------DARTQKS-Q-IIAT------KGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSR 249 (264)
Q Consensus 194 ----------------D~~t~~~-~-~~~~------~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~ 249 (264)
+.+++.. . ...+ ...+.+++.++.|+....|++.|.|.+|+...+.. +...+...
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~-r~sf~~~~ 490 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH-RKSFGDSP 490 (910)
T ss_pred cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee-ecccccCc
Confidence 4443321 0 0111 12356788999999999999999999999987665 44555567
Q ss_pred ccceeeeee
Q psy9316 250 GHLMETRSL 258 (264)
Q Consensus 250 ~h~~~~~~~ 258 (264)
+|-.+++.|
T Consensus 491 ah~~~V~gl 499 (910)
T KOG1539|consen 491 AHKGEVTGL 499 (910)
T ss_pred cccCceeEE
Confidence 888888876
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-13 Score=121.89 Aligned_cols=188 Identities=18% Similarity=0.278 Sum_probs=134.0
Q ss_pred cCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCC--cc-cEEEecccccEEeEEEecCC-CCeEEEEeCCCcEEE
Q psy9316 49 AHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDL--NK-EVVYRGHTGSVDQLCWHATN-PDLLSTASGDKTVRI 123 (264)
Q Consensus 49 ~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~--~~-~~~~~~h~~~v~~i~~~~~~-~~~l~s~s~dg~i~v 123 (264)
.-.+.|.|+.|+| +..+++.|..+|.|.+||+...+.. .. ......|..+|+.+.|...- +.-++++|.||.|+.
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 3467899999999 7788888999999999998765431 11 12234789999999996532 145778999999999
Q ss_pred EECCCCCc--------------------------------ceEEEeecCCCcEEEEEe-ccCCCc----cceEEEecccc
Q psy9316 124 WDARTQKS--------------------------------QIMLASGSFDKSVAIFAL-DKKGDL----NKEVVYRGHTG 166 (264)
Q Consensus 124 wd~~~~~~--------------------------------~~~~~~~~~d~~i~i~~~-~~~~~~----~~~~~~~~h~~ 166 (264)
|+++.-.. ...++.|+..|.|.--.. ...... .....+..|.+
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 98764211 124778888887765221 111111 11224567889
Q ss_pred ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc-ce--eEeecCceEEEEEcCCCC-EEEEeeCCCeEEEEEccc
Q psy9316 167 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-SQ--IIATKGENINITWAPNGN-TIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 167 ~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~-~~--~~~~~~~~~~v~~sp~g~-~la~gs~d~~i~~~d~~~ 237 (264)
+|+.+.++|....+|++++ |.+++||...... .. .......+.+++|||-.. .++++..||.+.+||+..
T Consensus 400 ~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred ceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 9999999998888888876 9999999776332 22 222344588999999665 668888899999999875
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=6e-13 Score=106.72 Aligned_cols=152 Identities=17% Similarity=0.384 Sum_probs=100.6
Q ss_pred EEEEECCCCCeEEEEEC----------CCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEE-EeCCCcEEE
Q psy9316 55 HSVAWSCDGRRLASGSF----------DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST-ASGDKTVRI 123 (264)
Q Consensus 55 ~~l~~s~~g~~l~s~s~----------dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s-~s~dg~i~v 123 (264)
..+.|+|+|++|+.-.. -+...+|-++..+.......+ ...++|.+++|+|.+..+++. |..++.+.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 45779999988776432 244666666544332221112 234579999999977655443 445778999
Q ss_pred EECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeC---CCcEEEEeCCCCcc
Q psy9316 124 WDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG---DKTVRIWDARTQKS 200 (264)
Q Consensus 124 wd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~---dg~i~iwD~~t~~~ 200 (264)
||++... +. .+ +...++.+.|+|.+ .+++.++- .|.+.+||.++.+.
T Consensus 88 yd~~~~~---------------i~------------~~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~ 137 (194)
T PF08662_consen 88 YDVKGKK---------------IF------------SF--GTQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKK 137 (194)
T ss_pred EcCcccE---------------eE------------ee--cCCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEE
Confidence 9986211 01 11 23467889999965 56666553 46799999997665
Q ss_pred eeEeecCceEEEEEcCCCCEEEEeeC------CCeEEEEEccc
Q psy9316 201 QIIATKGENINITWAPNGNTIAVGNK------EDLVTFIDVVK 237 (264)
Q Consensus 201 ~~~~~~~~~~~v~~sp~g~~la~gs~------d~~i~~~d~~~ 237 (264)
........+..++|||+|+++++++. |+.++||+...
T Consensus 138 i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 138 ISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred eeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 33333344678999999999999875 78899999764
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.7e-13 Score=109.35 Aligned_cols=171 Identities=20% Similarity=0.349 Sum_probs=125.0
Q ss_pred ceEeecCCCeeEEEeecCceEEeccccccccccc-cCCCCEEEEEECCC---CCeEEEEECCCcEEEEEeccCCCCcccE
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQ-AHGSKVHSVAWSCD---GRRLASGSFDKSVAIFALDKKGDLNKEV 90 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~---g~~l~s~s~dg~i~v~~~~~~~~~~~~~ 90 (264)
...+.|-+.-+.++++.|.++|.|++.+.-..+. --.+.|.+-+++|- ..+|++|..|-.|++-|+.. +.. ..
T Consensus 106 s~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~--sH 182 (397)
T KOG4283|consen 106 SAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSF--SH 182 (397)
T ss_pred eeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-Ccc--ee
Confidence 3467776555667899999999999876543321 23567888888883 34777788888999999864 433 35
Q ss_pred EEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceee
Q psy9316 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 170 (264)
Q Consensus 91 ~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~ 170 (264)
++.+|.+.|..+.|+|...-.|++|+.||.|++||++... |.....|...........+-..|.+.|+.
T Consensus 183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras-----------gcf~~lD~hn~k~~p~~~~n~ah~gkvng 251 (397)
T KOG4283|consen 183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS-----------GCFRVLDQHNTKRPPILKTNTAHYGKVNG 251 (397)
T ss_pred eeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc-----------ceeEEeecccCccCccccccccccceeee
Confidence 6889999999999999888889999999999999998531 22233333221111111123578899999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEeCCCCcc
Q psy9316 171 LCWHATNPDLLSTASGDKTVRIWDARTQKS 200 (264)
Q Consensus 171 i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~ 200 (264)
++|.+ ++.++++++.|..+++|+.++++.
T Consensus 252 la~tS-d~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 252 LAWTS-DARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred eeecc-cchhhhhccCccceEEeecccCcc
Confidence 99987 457888999999999999998764
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-12 Score=105.91 Aligned_cols=214 Identities=15% Similarity=0.203 Sum_probs=146.5
Q ss_pred ceEeecCCCeeEEEeecCceEEec--cccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEE
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHF--NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY 92 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~ 92 (264)
-++|.+-|.. +.++..+|-+-+| .+...-+.+.+|..+|.+++|++||+.|+++|.|..|++||+..+. ......
T Consensus 28 ~~~Fs~~G~~-lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir- 104 (405)
T KOG1273|consen 28 CCQFSRWGDY-LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR- 104 (405)
T ss_pred eEEeccCcce-eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE-
Confidence 3467777765 4567778876555 4556667889999999999999999999999999999999997533 333233
Q ss_pred ecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC-----------------------cceEEEeecCCCcEEEEEe
Q psy9316 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-----------------------SQIMLASGSFDKSVAIFAL 149 (264)
Q Consensus 93 ~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~-----------------------~~~~~~~~~~d~~i~i~~~ 149 (264)
..++|..+.|+|...+.+++.-.+..-.+.++...+ ...++.+|...|.+.+++.
T Consensus 105 --f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 --FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred --ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 357899999999887777766666666666654321 1225777888888888875
Q ss_pred ccCCCccceEEEeccc-cceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc-------cee-EeecCce-----EEEEEc
Q psy9316 150 DKKGDLNKEVVYRGHT-GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-------SQI-IATKGEN-----INITWA 215 (264)
Q Consensus 150 ~~~~~~~~~~~~~~h~-~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~-------~~~-~~~~~~~-----~~v~~s 215 (264)
.+-.... .++... +.|..|.++- .+..|+.-+.|..|+.|+++.-. ... ....+-+ .++.||
T Consensus 183 ~t~e~va---s~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs 258 (405)
T KOG1273|consen 183 ETLECVA---SFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS 258 (405)
T ss_pred chheeee---eeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence 4321111 122222 5677888764 56788888999999999887311 110 1111112 358899
Q ss_pred CCCCEEEEeeC-CCeEEEEEccc
Q psy9316 216 PNGNTIAVGNK-EDLVTFIDVVK 237 (264)
Q Consensus 216 p~g~~la~gs~-d~~i~~~d~~~ 237 (264)
.+|.|++.|++ -.-+++|.-..
T Consensus 259 ~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 259 GDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred CCccEEEeccccceeEEEEecCC
Confidence 99999987764 45699998543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-12 Score=110.10 Aligned_cols=180 Identities=13% Similarity=0.155 Sum_probs=119.2
Q ss_pred EEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeE-EEEECCCcEEEEEeccCCCCcccEEEecccccEEeE
Q psy9316 26 HLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 102 (264)
Q Consensus 26 ~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l-~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i 102 (264)
.++++.|+.++.|+. .+.++.+..+. .+.++.|+|+++.+ ++++.++.|.+|+.... .. ...+..+. .+..+
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~--~~~~~~~~-~~~~~ 78 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATG-EV--IGTLPSGP-DPELF 78 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCC-cE--EEeccCCC-CccEE
Confidence 345677888888875 44556666554 46789999999987 45678899999997642 21 11233333 34577
Q ss_pred EEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEE
Q psy9316 103 CWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 182 (264)
Q Consensus 103 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~ 182 (264)
+|+|++..++++++.|+.+++||+++.+....+ . +...+..+.|+|++ .+++
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~--------------------------~-~~~~~~~~~~~~dg-~~l~ 130 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEI--------------------------P-VGVEPEGMAVSPDG-KIVV 130 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe--------------------------e-CCCCcceEEECCCC-CEEE
Confidence 898876545555567899999999764321100 0 11234568898854 5666
Q ss_pred EEeCCC-cEEEEeCCCCcceeE-eecCceEEEEEcCCCCEEEEe-eCCCeEEEEEcccC
Q psy9316 183 TASGDK-TVRIWDARTQKSQII-ATKGENINITWAPNGNTIAVG-NKEDLVTFIDVVKS 238 (264)
Q Consensus 183 s~~~dg-~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~g-s~d~~i~~~d~~~~ 238 (264)
++..++ .+.+||.++.+.... .....+..++|+|+|++|+++ ..++.+++||+.++
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 666654 577889987764322 223345678999999988655 46999999999764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-13 Score=121.72 Aligned_cols=209 Identities=21% Similarity=0.331 Sum_probs=154.1
Q ss_pred ceEeecCCCCCceEeecCCCeeEEEeecCceEEecccc------ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEE
Q psy9316 4 PVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTH------NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAI 77 (264)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v 77 (264)
|.+..|.....+..+-|+|. |+++.+.|.+.|+|-.. +.+-+-+-|.-.+.|+++-+...++++|..++.+++
T Consensus 355 ~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRv 433 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRV 433 (764)
T ss_pred cccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeee
Confidence 67788888899999999995 89999999999998665 445566778889999999886677788888899999
Q ss_pred EEeccC--------------------------------CCCc--------------------------------------
Q psy9316 78 FALDKK--------------------------------GDLN-------------------------------------- 87 (264)
Q Consensus 78 ~~~~~~--------------------------------~~~~-------------------------------------- 87 (264)
|+.-.. +...
T Consensus 434 F~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~t 513 (764)
T KOG1063|consen 434 FEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNT 513 (764)
T ss_pred ecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhc
Confidence 973210 0000
Q ss_pred ---ccEEEecccccEEeEEEecCCCCeEEEEeCCCc-----EEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceE
Q psy9316 88 ---KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT-----VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEV 159 (264)
Q Consensus 88 ---~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~ 159 (264)
....+.+|-..|.+++.+|.+ ++++|+++... |++|+..+- ....
T Consensus 514 LwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W--------------------------~~~~ 566 (764)
T KOG1063|consen 514 LWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANW--------------------------LQVQ 566 (764)
T ss_pred cchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccch--------------------------hhhh
Confidence 000124678888999888744 78888775432 455554321 1112
Q ss_pred EEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc------eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEE
Q psy9316 160 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS------QIIATKGENINITWAPNGNTIAVGNKEDLVTFI 233 (264)
Q Consensus 160 ~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~------~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~ 233 (264)
.+..|.-.|+.+.|+|+ +.+|++.+.|.++.+|....... ....+...+.+++|+|++.+++|+|.|..+.+|
T Consensus 567 ~L~~HsLTVT~l~FSpd-g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 567 ELEGHSLTVTRLAFSPD-GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW 645 (764)
T ss_pred eecccceEEEEEEECCC-CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence 34678889999999995 47888999999999997743321 123345567899999999999999999999999
Q ss_pred EcccCCCC
Q psy9316 234 DVVKSLPP 241 (264)
Q Consensus 234 d~~~~~~~ 241 (264)
...+.+.+
T Consensus 646 ~~~~~~d~ 653 (764)
T KOG1063|consen 646 EEPDLRDK 653 (764)
T ss_pred eccCchhh
Confidence 98877433
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=119.87 Aligned_cols=202 Identities=24% Similarity=0.312 Sum_probs=134.9
Q ss_pred ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEE
Q psy9316 46 EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd 125 (264)
.|.+|++.|.+|..+|.|.+|++|+.||+++||.+.+ +.+.....+ .+.|.+++|.|....-++.......+.+-+
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~~---d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQF---DSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEee---cceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 5789999999999999999999999999999999875 433322222 356999999997665444455544444433
Q ss_pred CCCC------Ccce--------------------------------------------------EEEeec---CCCcEEE
Q psy9316 126 ARTQ------KSQI--------------------------------------------------MLASGS---FDKSVAI 146 (264)
Q Consensus 126 ~~~~------~~~~--------------------------------------------------~~~~~~---~d~~i~i 146 (264)
..-+ .... ++++.. ....+.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 2111 0000 122211 1233445
Q ss_pred EEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee--cCceEEEEEcCCCCEEEEe
Q psy9316 147 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT--KGENINITWAPNGNTIAVG 224 (264)
Q Consensus 147 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~--~~~~~~v~~sp~g~~la~g 224 (264)
++++..... ..|+.-.+.|.++.|+|....+|+ +....|+|||+..++...... ...+..++.+|.|..|++|
T Consensus 551 HQLSK~~sQ---~PF~kskG~vq~v~FHPs~p~lfV--aTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 551 HQLSKRKSQ---SPFRKSKGLVQRVKFHPSKPYLFV--ATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred Eeccccccc---CchhhcCCceeEEEecCCCceEEE--EeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 554322111 123334467889999998877766 457799999999876432222 3356789999999999999
Q ss_pred eCCCeEEEEEcccCCCCCCCcccCcccceeeeeec
Q psy9316 225 NKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSLW 259 (264)
Q Consensus 225 s~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~~ 259 (264)
+.|+.+.+||+.-+. .-+.++|=|...+|+|=
T Consensus 626 s~d~k~~WfDldlss---kPyk~lr~H~~avr~Va 657 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSS---KPYKTLRLHEKAVRSVA 657 (733)
T ss_pred cCCCeeEEEEcccCc---chhHHhhhhhhhhhhhh
Confidence 999999999986332 23456777888888874
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=111.34 Aligned_cols=162 Identities=23% Similarity=0.413 Sum_probs=121.3
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEE---EecccccEEeEEEecC-CCCeEEEEeCCCcEEEE
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV---YRGHTGSVDQLCWHAT-NPDLLSTASGDKTVRIW 124 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~---~~~h~~~v~~i~~~~~-~~~~l~s~s~dg~i~vw 124 (264)
.+-+.|.|+.|.|+++.+++-. |..|.+|+++.......+.. -..|....++-.|+|. +.+.++ ...|+++..|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCCcEEEE
Confidence 4557999999999999998874 88999999986544222111 1135556777789984 445554 4668999999
Q ss_pred ECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe
Q psy9316 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA 204 (264)
Q Consensus 125 d~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~ 204 (264)
|+++.+.... .-.+|-..|..+.|+|+...+|+|++.||.|+|||.+.-+..+..
T Consensus 199 D~RT~~~~~s-------------------------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e 253 (370)
T KOG1007|consen 199 DLRTMKKNNS-------------------------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE 253 (370)
T ss_pred Eccchhhhcc-------------------------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence 9997543211 114677889999999988889999999999999999987654443
Q ss_pred ecC---ceEEEEEcCC-CCEEEEeeCCCeEEEEEccc
Q psy9316 205 TKG---ENINITWAPN-GNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 205 ~~~---~~~~v~~sp~-g~~la~gs~d~~i~~~d~~~ 237 (264)
..+ -+.+|.|+|. .+.+++|+.|..|.++....
T Consensus 254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred cCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 332 3789999994 56779999999999998653
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-12 Score=121.66 Aligned_cols=201 Identities=19% Similarity=0.282 Sum_probs=139.0
Q ss_pred EEeccccccccccccC---CCCEEEEEECC--CCCeEEEEECCCcEEEEEeccCC--CCcccEEE---ecc----cccEE
Q psy9316 35 VKHFNTHNDIKEYQAH---GSKVHSVAWSC--DGRRLASGSFDKSVAIFALDKKG--DLNKEVVY---RGH----TGSVD 100 (264)
Q Consensus 35 ~~~~~~~~~~~~~~~h---~~~V~~l~~s~--~g~~l~s~s~dg~i~v~~~~~~~--~~~~~~~~---~~h----~~~v~ 100 (264)
++.|+..+.+..|..+ ...|+.+.+-. |...+++|+.||.|+||+--..+ +.+....+ .++ .+.-.
T Consensus 1090 vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~ 1169 (1387)
T KOG1517|consen 1090 VWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGL 1169 (1387)
T ss_pred EEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCe
Confidence 4556666666666443 34688888754 55689999999999999733322 11111111 111 11123
Q ss_pred eEEEecCCCCeEEEEeCCCcEEEEECCCCCc---------------------ceEEEeecCCCcEEEEEeccCCCccceE
Q psy9316 101 QLCWHATNPDLLSTASGDKTVRIWDARTQKS---------------------QIMLASGSFDKSVAIFALDKKGDLNKEV 159 (264)
Q Consensus 101 ~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~ 159 (264)
-+.|....++++ +++.-..|++||+..+.. ..++++|-.||++++||.+....-....
T Consensus 1170 v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLL-VTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred eeehhhhCCeEE-ecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 356876665544 555678999999976431 1368899999999999988654444455
Q ss_pred EEeccccc--eeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc----eeEeec--C-ceEEEEEcCCCCEEEEeeCCCeE
Q psy9316 160 VYRGHTGS--VDQLCWHATNPDLLSTASGDKTVRIWDARTQKS----QIIATK--G-ENINITWAPNGNTIAVGNKEDLV 230 (264)
Q Consensus 160 ~~~~h~~~--i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~----~~~~~~--~-~~~~v~~sp~g~~la~gs~d~~i 230 (264)
..+.|++. |..+.+.+.+-.-++||+.+|.|++||++.... ....+- + ..+++..+++...+|+|+. ..|
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLI 1327 (1387)
T ss_pred eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceE
Confidence 67888877 999999886555689999999999999998421 111211 3 3678899999999999998 999
Q ss_pred EEEEccc
Q psy9316 231 TFIDVVK 237 (264)
Q Consensus 231 ~~~d~~~ 237 (264)
.||++..
T Consensus 1328 kIy~~~G 1334 (1387)
T KOG1517|consen 1328 KIYSLSG 1334 (1387)
T ss_pred EEEecCh
Confidence 9999874
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.9e-13 Score=109.07 Aligned_cols=163 Identities=21% Similarity=0.403 Sum_probs=120.9
Q ss_pred cccCCCCEEEEEECC-----CCCeEEEEECCCcEEEEEeccCCCCcccEEE--ecccccEEeEEEecC---CCCeEEEEe
Q psy9316 47 YQAHGSKVHSVAWSC-----DGRRLASGSFDKSVAIFALDKKGDLNKEVVY--RGHTGSVDQLCWHAT---NPDLLSTAS 116 (264)
Q Consensus 47 ~~~h~~~V~~l~~s~-----~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~--~~h~~~v~~i~~~~~---~~~~l~s~s 116 (264)
.+.|+.+|..++|++ +.+.++++|. ..+.+|+....+.......+ ..|......++|.-+ +.-+++.++
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 357888999999984 2345666654 47888887654422221111 135556666777543 223666777
Q ss_pred CCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCC
Q psy9316 117 GDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 196 (264)
Q Consensus 117 ~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~ 196 (264)
.-|.|++.|+.+++.. ..+.+|-..|+.|.++|.++.++++++.|-+|++||++
T Consensus 113 ~~GvIrVid~~~~~~~--------------------------~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCS--------------------------KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred ceeEEEEEecchhhhc--------------------------cceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 7788888887654422 12467888999999999999999999999999999999
Q ss_pred CCcceeE-----eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 197 TQKSQII-----ATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 197 t~~~~~~-----~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
+..+... .+.+++.+++|+++|.++++++-|..+.+|++.
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 9987544 355789999999999999999999999999988
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.4e-12 Score=113.41 Aligned_cols=215 Identities=19% Similarity=0.221 Sum_probs=129.7
Q ss_pred ceEEeccc-cccccccccCCCCEEEEEECCCCCeEEEEECCC---cEEEEEeccCCCCcccEEEecccccEEeEEEecCC
Q psy9316 33 DYVKHFNT-HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDK---SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108 (264)
Q Consensus 33 ~~~~~~~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg---~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 108 (264)
..+++++. +...+.+..|...+...+|+|||++|+.++.++ .|.+|++.. +.......+.+| ...+.|+|++
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t-g~~~~l~~~~g~---~~~~~wSPDG 259 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS-GARKVVASFRGH---NGAPAFSPDG 259 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCC-CceEEEecCCCc---cCceeECCCC
Confidence 34555543 233455667888899999999999999887543 699999864 221111112233 3467999976
Q ss_pred CCeEEEEeCCCcEEEE--ECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccc
Q psy9316 109 PDLLSTASGDKTVRIW--DARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167 (264)
Q Consensus 109 ~~~l~s~s~dg~i~vw--d~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~ 167 (264)
..++++.+.+|.+.+| |+.+++.. .++.+...++...||+++..+..... ..+..
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~---l~~~~- 335 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL---VGGRG- 335 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE---ecCCC-
Confidence 5455555578876655 65543211 12333445677788887654432211 12322
Q ss_pred eeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCccc
Q psy9316 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLT 247 (264)
Q Consensus 168 i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~ 247 (264)
....|+|++ ..|+..+.+ .+.+||+.++............+++|+|||++|++++.++...+|++..... ....+
T Consensus 336 -~~~~~SpDG-~~ia~~~~~-~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G--~~~~~ 410 (429)
T PRK01742 336 -YSAQISADG-KTLVMINGD-NVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADG--RFKAR 410 (429)
T ss_pred -CCccCCCCC-CEEEEEcCC-CEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC--CceEE
Confidence 356788865 456555555 4666999887643322222335678999999999999999888888643111 12223
Q ss_pred Ccccceeeeee-cc
Q psy9316 248 SRGHLMETRSL-WG 260 (264)
Q Consensus 248 ~~~h~~~~~~~-~~ 260 (264)
..+|..+++.+ |+
T Consensus 411 l~~~~g~~~~p~ws 424 (429)
T PRK01742 411 LPGSDGQVKFPAWS 424 (429)
T ss_pred ccCCCCCCCCcccC
Confidence 45666665533 65
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=104.54 Aligned_cols=179 Identities=22% Similarity=0.288 Sum_probs=122.1
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccCC------CC-cccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEE
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKG------DL-NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~------~~-~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd 125 (264)
.|.+-+++|.+++|+.|..+|+|.++.++.-- .. ......++|.++++.+.|+ + .+|++++ ||.|+=|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d-~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--D-DFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--h-hheeecc-CceEEEee
Confidence 46667899999999999999999999876310 11 1123347899999999997 3 4566654 69998775
Q ss_pred CCCCCc--------------------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEE
Q psy9316 126 ARTQKS--------------------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173 (264)
Q Consensus 126 ~~~~~~--------------------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~ 173 (264)
-+.... ...+..++.|+.+.-||+.... +. .++++|++.|.++.-
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-i~--r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-IQ--REYRGHTDYVHSVVG 164 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE-EE--EEEcCCcceeeeeee
Confidence 321100 0123445588999999986532 22 368999999999876
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCcce-eEeecCceE-------E--EEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 174 HATNPDLLSTASGDKTVRIWDARTQKSQ-IIATKGENI-------N--ITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 174 ~~~~~~~i~s~~~dg~i~iwD~~t~~~~-~~~~~~~~~-------~--v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
-.. ..-|+||++||++++||.+++++. ......... + .+..-+..+|++|. ...+.+|.++.+.+
T Consensus 165 R~~-~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 165 RNA-NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSES 239 (325)
T ss_pred ccc-CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCc
Confidence 322 345679999999999999998853 222211111 1 34455778888876 66779999886443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-11 Score=106.17 Aligned_cols=180 Identities=29% Similarity=0.499 Sum_probs=133.3
Q ss_pred ecCceEEecccc---ccccccccCCCCEEEEEECCCCCeEEEEEC-CCcEEEEEeccCCCCcccEEEecccccEEeEEEe
Q psy9316 30 KIDDYVKHFNTH---NDIKEYQAHGSKVHSVAWSCDGRRLASGSF-DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 105 (264)
Q Consensus 30 ~~d~~~~~~~~~---~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~-dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 105 (264)
..|+.++.|+.. .....+..|...|..+.|+|+++.+++++. |+.+++|++... .....+..|...|.++.|.
T Consensus 131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~ 207 (466)
T COG2319 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG---KPLSTLAGHTDPVSSLAFS 207 (466)
T ss_pred CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC---ceEEeeccCCCceEEEEEc
Confidence 338888888664 456678899999999999999998888885 999999998641 2223466799999999999
Q ss_pred cCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEe
Q psy9316 106 ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS 185 (264)
Q Consensus 106 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~ 185 (264)
|.+...+++++.|+.+++||.+.+..... .+.+|.... ...|+|.+ .++++++
T Consensus 208 ~~~~~~~~~~~~d~~i~~wd~~~~~~~~~-------------------------~~~~~~~~~-~~~~~~~~-~~~~~~~ 260 (466)
T COG2319 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRS-------------------------TLSGHSDSV-VSSFSPDG-SLLASGS 260 (466)
T ss_pred CCcceEEEEecCCCcEEEEECCCCcEEee-------------------------ecCCCCcce-eEeECCCC-CEEEEec
Confidence 76643555558999999998763321100 123454443 22777765 6777999
Q ss_pred CCCcEEEEeCCCCcc-e-eE-eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 186 GDKTVRIWDARTQKS-Q-II-ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 186 ~dg~i~iwD~~t~~~-~-~~-~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
.|+.+++||.+.... . .. .+...+.++.|+|++..+++++.|+.+.+||.....
T Consensus 261 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 999999999997664 1 11 224567888999999999889999889999876544
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-12 Score=105.02 Aligned_cols=175 Identities=18% Similarity=0.330 Sum_probs=135.7
Q ss_pred cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCc
Q psy9316 41 HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 120 (264)
Q Consensus 41 ~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~ 120 (264)
.+..+++..|...|++++|+|..++|++++.|..-.+|..-..+...+..++.-++...+++.|+|.. +.|++||.-..
T Consensus 45 w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~ 123 (361)
T KOG1523|consen 45 WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARL 123 (361)
T ss_pred ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccE
Confidence 35678999999999999999999999999999999999875556666777777899999999999955 78899999999
Q ss_pred EEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCC----
Q psy9316 121 VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR---- 196 (264)
Q Consensus 121 i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~---- 196 (264)
|.+|=++.+. ... ....+-+-+.+.|.++.|+|+ +-++++|+.|+..+||...
T Consensus 124 isVcy~E~EN-dWW---------------------VsKhikkPirStv~sldWhpn-nVLlaaGs~D~k~rVfSayIK~V 180 (361)
T KOG1523|consen 124 ISVCYYEQEN-DWW---------------------VSKHIKKPIRSTVTSLDWHPN-NVLLAAGSTDGKCRVFSAYIKGV 180 (361)
T ss_pred EEEEEEeccc-cee---------------------hhhhhCCccccceeeeeccCC-cceecccccCcceeEEEEeeecc
Confidence 9888776422 110 001112345678999999995 4688999999999999553
Q ss_pred -CCcc-----------ee--E--eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 197 -TQKS-----------QI--I--ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 197 -t~~~-----------~~--~--~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
.+.. ++ + ...+.+..+.|+|+|..|+-.+.|..+.+-|...+.
T Consensus 181 dekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 181 DEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 2110 00 1 123456789999999999999999999999987654
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-12 Score=119.33 Aligned_cols=222 Identities=17% Similarity=0.271 Sum_probs=148.7
Q ss_pred CCceEeecC-CCeeEEEeecCceEEecccc-------ccccccc---cC----CCCEEEEEECCCCCeEEEEECCCcEEE
Q psy9316 13 SPEYKLLPS-GSQFHLVCKIDDYVKHFNTH-------NDIKEYQ---AH----GSKVHSVAWSCDGRRLASGSFDKSVAI 77 (264)
Q Consensus 13 ~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~-------~~~~~~~---~h----~~~V~~l~~s~~g~~l~s~s~dg~i~v 77 (264)
..++.++-. +..+.++|+.||.||+|... +.+..+. ++ .+.=.-+.|..+..+|+++|.-..|+|
T Consensus 1112 Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRI 1191 (1387)
T KOG1517|consen 1112 VSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRI 1191 (1387)
T ss_pred cceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEE
Confidence 344444432 34566789999999998652 2222221 11 111144568887677777777789999
Q ss_pred EEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------------c
Q psy9316 78 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------------Q 132 (264)
Q Consensus 78 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------------~ 132 (264)
||.+...... .+..+-..-|+.+.-+...++.+++|-.||.+++||.+.... .
T Consensus 1192 WDa~~E~~~~--diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1192 WDAHKEQVVA--DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EecccceeEe--ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 9987533221 122234455777765555568999999999999999875321 0
Q ss_pred eEEEeecCCCcEEEEEeccCCCccceEEEeccc--c-ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee----
Q psy9316 133 IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT--G-SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT---- 205 (264)
Q Consensus 133 ~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~--~-~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~---- 205 (264)
..+++|+.+|.|++||++.... ....+...|- + ..+++..++ ...+||+|+. +.|+|||+...+......
T Consensus 1270 ~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSK-ETFLTIVAHWEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF 1346 (1387)
T ss_pred cceeeeccCCeEEEEecccCcc-cccceeeeccccCccceeeeecc-CCCeeeecCc-ceEEEEecChhhhcccccCccc
Confidence 1378999999999999987421 1122222332 2 378888886 4578998887 999999998765322211
Q ss_pred ----cCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 206 ----KGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 206 ----~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
.+.+.+++|+|..-.+|+|+.|.+|.+|...+++
T Consensus 1347 ~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 1346789999999999999999999999876543
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=106.57 Aligned_cols=190 Identities=22% Similarity=0.352 Sum_probs=138.1
Q ss_pred cCCCCEEEEEECCCCC-----eEEEEECCCcEEEEEeccCC-CCcccEEE-----ecccccEEeEEEecCCCCeEEEEeC
Q psy9316 49 AHGSKVHSVAWSCDGR-----RLASGSFDKSVAIFALDKKG-DLNKEVVY-----RGHTGSVDQLCWHATNPDLLSTASG 117 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~-----~l~s~s~dg~i~v~~~~~~~-~~~~~~~~-----~~h~~~v~~i~~~~~~~~~l~s~s~ 117 (264)
.|.-+++.+.|.|+.+ +||+. +..+++|.+.... .......+ ..+.+++++..|...+++++.++|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 6778899999999763 55554 3579999887421 11111111 2356789999999989999999999
Q ss_pred CCcEEEEECCCCCc-----------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEc
Q psy9316 118 DKTVRIWDARTQKS-----------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 174 (264)
Q Consensus 118 dg~i~vwd~~~~~~-----------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~ 174 (264)
|-+..+||++++.. ..+|++.+.||++++||++...-..-+..-.....+.-.++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 99999999988521 1258899999999999997522111111111223567789999
Q ss_pred CCCCCEEEEEeCC-CcEEEEeCCCCcc---eeEeecCceEEEEEcCC-CCEEEEeeCCCeEEEEEcccCCC
Q psy9316 175 ATNPDLLSTASGD-KTVRIWDARTQKS---QIIATKGENINITWAPN-GNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 175 ~~~~~~i~s~~~d-g~i~iwD~~t~~~---~~~~~~~~~~~v~~sp~-g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
+.+..++|+-..| ..|.|.|++.... .+.-+.+.++.++|.|. ..++++++.|-.+.+||+..+..
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 9999998886655 5688899997542 33446677899999994 57899999999999999987555
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-12 Score=101.86 Aligned_cols=230 Identities=17% Similarity=0.201 Sum_probs=143.9
Q ss_pred ceEeecCCCCCceEeecCCCeeEEEeecCceEEeccccc--cccccc-cCCCCEEEEEECCCCCeEEEEECCCcEEEEEe
Q psy9316 4 PVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHN--DIKEYQ-AHGSKVHSVAWSCDGRRLASGSFDKSVAIFAL 80 (264)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~-~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~ 80 (264)
|..-+|...+.-..++.-.+.-++.+..-|+++.|...+ ....+. .|...|+.+.--|+ +.+.+=+.|..+.+|++
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTI 84 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEc
Confidence 444555333333333333333455677788888886532 334555 45667888888877 66677789999999987
Q ss_pred ccCC------------------------CCcccEEE--------------------------ecccccEEeEEEecCC-C
Q psy9316 81 DKKG------------------------DLNKEVVY--------------------------RGHTGSVDQLCWHATN-P 109 (264)
Q Consensus 81 ~~~~------------------------~~~~~~~~--------------------------~~h~~~v~~i~~~~~~-~ 109 (264)
.... ..+....+ .+..+.+++..|.... .
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 6410 00000000 1123456666543322 2
Q ss_pred C-eEEEEeCCCcEEEEECCCCCcceE-----------------------------EEeecCCCcEEEEEeccC-CCccce
Q psy9316 110 D-LLSTASGDKTVRIWDARTQKSQIM-----------------------------LASGSFDKSVAIFALDKK-GDLNKE 158 (264)
Q Consensus 110 ~-~l~s~s~dg~i~vwd~~~~~~~~~-----------------------------~~~~~~d~~i~i~~~~~~-~~~~~~ 158 (264)
. ++++|-.+|.+.+||+.++...+. -+.|+.+..+..|.++-. +.+...
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 2 556677899999999988621110 133444555667776543 222111
Q ss_pred EEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce--eEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q psy9316 159 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--IIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 159 ~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~--~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~ 235 (264)
....--+-+|..+.+-| +++++||+++|+.||||.-++.... +..+.+.+.+++|+|+...+|.++.|..|.+|++
T Consensus 245 ~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 245 KEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 11111123577777766 4689999999999999999998752 3345677999999999999999999999999986
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-12 Score=106.59 Aligned_cols=162 Identities=14% Similarity=0.272 Sum_probs=127.0
Q ss_pred CCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC
Q psy9316 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 129 (264)
Q Consensus 50 h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~ 129 (264)
-..+|+|.+|++|+..++.+-....+.||........+...+++.|...|+.++|.|.. +.|++++.|..-++|....+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCCC
Confidence 35789999999999999999999999999887544355667788999999999999966 56779999999999988432
Q ss_pred CcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc------eeE
Q psy9316 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS------QII 203 (264)
Q Consensus 130 ~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~------~~~ 203 (264)
. ...+...+..+.....++.|+|. .+.|+.|+....|.||=++.+.- ...
T Consensus 88 ~-----------------------~WkptlvLlRiNrAAt~V~WsP~-enkFAVgSgar~isVcy~E~ENdWWVsKhikk 143 (361)
T KOG1523|consen 88 G-----------------------TWKPTLVLLRINRAATCVKWSPK-ENKFAVGSGARLISVCYYEQENDWWVSKHIKK 143 (361)
T ss_pred C-----------------------eeccceeEEEeccceeeEeecCc-CceEEeccCccEEEEEEEecccceehhhhhCC
Confidence 1 11111223345667889999985 57889999999999997776542 112
Q ss_pred eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 204 ATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 204 ~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.....+.+++|.|++-.||+||.|+.+++|-+-
T Consensus 144 PirStv~sldWhpnnVLlaaGs~D~k~rVfSay 176 (361)
T KOG1523|consen 144 PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY 176 (361)
T ss_pred ccccceeeeeccCCcceecccccCcceeEEEEe
Confidence 234567899999999999999999999999743
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-10 Score=100.77 Aligned_cols=220 Identities=11% Similarity=0.141 Sum_probs=130.4
Q ss_pred EeecCCCeeEEEeecCceEEeccccc--cccccc--cCCCCEEEEEECCCCCeEEEEEC-CCcEEEEEeccCCCCcccEE
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHN--DIKEYQ--AHGSKVHSVAWSCDGRRLASGSF-DKSVAIFALDKKGDLNKEVV 91 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~--~h~~~V~~l~~s~~g~~l~s~s~-dg~i~v~~~~~~~~~~~~~~ 91 (264)
.+.|.+..+.+.+..++.+..|+... .+.... ...+....+.|+|++++|++++. ++.|.+|+++..+.......
T Consensus 41 ~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~ 120 (330)
T PRK11028 41 VISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ 120 (330)
T ss_pred EECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee
Confidence 45555554433334456665554321 111111 12345678999999999998875 78999999975443221111
Q ss_pred EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC-c-------------------------ceEEEeecCCCcEE
Q psy9316 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-S-------------------------QIMLASGSFDKSVA 145 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~-------------------------~~~~~~~~~d~~i~ 145 (264)
...+......++++|++..++++...++.|.+||+++.. . ..++++...++.|.
T Consensus 121 ~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~ 200 (330)
T PRK11028 121 IIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVD 200 (330)
T ss_pred eccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEE
Confidence 111223456778898765555666678999999997521 0 01223334478899
Q ss_pred EEEeccC-CCccceEEEecc------ccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEee---cCceEEEE
Q psy9316 146 IFALDKK-GDLNKEVVYRGH------TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIAT---KGENINIT 213 (264)
Q Consensus 146 i~~~~~~-~~~~~~~~~~~h------~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~---~~~~~~v~ 213 (264)
+|+++.. +.+........+ ......+.++|++..++++...+++|.+|++..... ..... ...+..+.
T Consensus 201 v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~ 280 (330)
T PRK11028 201 VWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFN 280 (330)
T ss_pred EEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceE
Confidence 9998642 222111111111 111235788886654555445689999999865431 11111 12345789
Q ss_pred EcCCCCEEEEeeC-CCeEEEEEcc
Q psy9316 214 WAPNGNTIAVGNK-EDLVTFIDVV 236 (264)
Q Consensus 214 ~sp~g~~la~gs~-d~~i~~~d~~ 236 (264)
++|+|++|+++.. ++.|.+|++.
T Consensus 281 ~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 281 IDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999999988775 8999999875
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.8e-13 Score=115.63 Aligned_cols=169 Identities=20% Similarity=0.328 Sum_probs=114.3
Q ss_pred CeeEEEeecCceEEeccc-cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEe
Q psy9316 23 SQFHLVCKIDDYVKHFNT-HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~ 101 (264)
+.-.++|+-||.+.+.+. ....+....|.+.|.|-.|+|||.-|+++|.||.|++|+- .+-+... +.....+|.|
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr--sGMLRSt--l~Q~~~~v~c 150 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR--SGMLRST--VVQNEESIRC 150 (737)
T ss_pred cceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec--cchHHHH--HhhcCceeEE
Confidence 334567899998877654 4445667899999999999999999999999999999963 2333221 2235667999
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEE
Q psy9316 102 LCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLL 181 (264)
Q Consensus 102 i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i 181 (264)
++|.|.....+.+.+ +.+.+=-+.. ..+....+.|.+-|-++.|+|. +++|
T Consensus 151 ~~W~p~S~~vl~c~g--~h~~IKpL~~--------------------------n~k~i~WkAHDGiiL~~~W~~~-s~lI 201 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQG--GHISIKPLAA--------------------------NSKIIRWRAHDGLVLSLSWSTQ-SNII 201 (737)
T ss_pred EEECCCCCceEEecC--CeEEEeeccc--------------------------ccceeEEeccCcEEEEeecCcc-ccce
Confidence 999998777776543 3333311211 1123356889999999999985 5799
Q ss_pred EEEeCCCcEEEEeCCCCccee-EeecCceEEEEEcCCCCEEEEee
Q psy9316 182 STASGDKTVRIWDARTQKSQI-IATKGENINITWAPNGNTIAVGN 225 (264)
Q Consensus 182 ~s~~~dg~i~iwD~~t~~~~~-~~~~~~~~~v~~sp~g~~la~gs 225 (264)
+||++|-..+|||........ ..+...+++++|+|+ +.++++|
T Consensus 202 ~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 202 ASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred eecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeee
Confidence 999999999999987543211 122233444444444 3333443
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-12 Score=108.78 Aligned_cols=176 Identities=18% Similarity=0.264 Sum_probs=124.5
Q ss_pred EEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc---
Q psy9316 55 HSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--- 131 (264)
Q Consensus 55 ~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--- 131 (264)
.+++|+++|..|++|+.||.+++|+.... ........|.+.|.++.|+|++ .++++.+.| ..+||+++++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhh
Confidence 78899999999999999999999985321 1222245789999999999955 688888889 999999987611
Q ss_pred -----------------------ceEEEeecCCCcEEEEEecc--CCCccceEEEeccccceeeEEEcCCCCCEEEEEeC
Q psy9316 132 -----------------------QIMLASGSFDKSVAIFALDK--KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG 186 (264)
Q Consensus 132 -----------------------~~~~~~~~~d~~i~i~~~~~--~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~ 186 (264)
..+++.-...+.+..+++.. .+...+-.....-...|.++.-++ ++++++-|+.
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~ 301 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTM 301 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEecc
Confidence 01122222233344443321 111111111112234788888876 5689999999
Q ss_pred CCcEEEEeCCCCccee---EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 187 DKTVRIWDARTQKSQI---IATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 187 dg~i~iwD~~t~~~~~---~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
||.|-|++..+-+... +.|...++.+.|+|+.++++..+.|..+.+.-+.
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999999998876432 3455668899999999999999999999998865
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.5e-12 Score=104.86 Aligned_cols=217 Identities=18% Similarity=0.294 Sum_probs=143.7
Q ss_pred EeecC-CCeeEEEeecCceEEecccccc----ccccccCC-CCEEEEEECCCCCeEEEEE----CCCcEEEEEeccCCCC
Q psy9316 17 KLLPS-GSQFHLVCKIDDYVKHFNTHND----IKEYQAHG-SKVHSVAWSCDGRRLASGS----FDKSVAIFALDKKGDL 86 (264)
Q Consensus 17 ~~~~~-~~~~~~~~~~d~~~~~~~~~~~----~~~~~~h~-~~V~~l~~s~~g~~l~s~s----~dg~i~v~~~~~~~~~ 86 (264)
+++-. +.|..++|+.||+||.|+.+.. ...+.+|. .+-.|++.+..++.++.|. .|-.+.+||+......
T Consensus 77 rf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~ 156 (376)
T KOG1188|consen 77 RFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL 156 (376)
T ss_pred EEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch
Confidence 44443 4566778999999999987543 22344554 4667888877888888875 4667999998764431
Q ss_pred cccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEecccc
Q psy9316 87 NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166 (264)
Q Consensus 87 ~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~ 166 (264)
.....+.|...|++++|+|.++++|++||.||.|.++|++.....-. ......|.+
T Consensus 157 -l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa-----------------------L~~viN~~s 212 (376)
T KOG1188|consen 157 -LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA-----------------------LLHVINHGS 212 (376)
T ss_pred -hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhh-----------------------HHHhhcccc
Confidence 12235689999999999999999999999999999999975321100 011234567
Q ss_pred ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecCc--------eEE----EE-EcC-CCCEEEEeeC-CCeEE
Q psy9316 167 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE--------NIN----IT-WAP-NGNTIAVGNK-EDLVT 231 (264)
Q Consensus 167 ~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~--------~~~----v~-~sp-~g~~la~gs~-d~~i~ 231 (264)
.|..+.|....-+.|.+-+-.+++.+|+++.+.......... ..+ |. .+| ++...+++.. -+...
T Consensus 213 SI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~ 292 (376)
T KOG1188|consen 213 SIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGT 292 (376)
T ss_pred eeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCcee
Confidence 799999987654567777889999999998776322211110 001 22 234 3444444443 67777
Q ss_pred EEEccc--CCCCCCCcccCcc-cceeeee
Q psy9316 232 FIDVVK--SLPPRERTLTSRG-HLMETRS 257 (264)
Q Consensus 232 ~~d~~~--~~~~~~~~~~~~~-h~~~~~~ 257 (264)
++-+.. ....-+..+.+.| |..=||+
T Consensus 293 ~~~~~~~~s~~~~~~~a~l~g~~~eiVR~ 321 (376)
T KOG1188|consen 293 IFPLVDTSSGSLLTEPAILQGGHEEIVRD 321 (376)
T ss_pred EEEeeecccccccCccccccCCcHHHHHH
Confidence 776663 4444456667777 5555564
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=110.97 Aligned_cols=174 Identities=20% Similarity=0.320 Sum_probs=127.0
Q ss_pred CCCEEEEEECCCCC-eEEEEECCCcEEEEEeccCCCCc------ccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEE
Q psy9316 51 GSKVHSVAWSCDGR-RLASGSFDKSVAIFALDKKGDLN------KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123 (264)
Q Consensus 51 ~~~V~~l~~s~~g~-~l~s~s~dg~i~v~~~~~~~~~~------~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~v 123 (264)
..+|..+.|.++.. +|++|+.|..|++|.++...... ....+..|...|+.+.|+|.+ .+++||+.+|.+.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEE
Confidence 45789999988766 99999999999999887543222 122355799999999999955 79999999999999
Q ss_pred EECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE
Q psy9316 124 WDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII 203 (264)
Q Consensus 124 wd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~ 203 (264)
|-...-. ....-...+..-.. .......++|...|..++|+|+ +.++++++.|+++++||+..+.....
T Consensus 92 Wk~~~~~--~~~~d~e~~~~ke~--------w~v~k~lr~h~~diydL~Ws~d-~~~l~s~s~dns~~l~Dv~~G~l~~~ 160 (434)
T KOG1009|consen 92 WKQGDVR--IFDADTEADLNKEK--------WVVKKVLRGHRDDIYDLAWSPD-SNFLVSGSVDNSVRLWDVHAGQLLAI 160 (434)
T ss_pred EEecCcC--CccccchhhhCccc--------eEEEEEecccccchhhhhccCC-CceeeeeeccceEEEEEeccceeEee
Confidence 9865311 00000000000001 1112346789999999999985 57888999999999999999985333
Q ss_pred --eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 204 --ATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 204 --~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.+...+..++|.|-++|+++=+.|...+.+.+.
T Consensus 161 ~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 161 LDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred ccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 344567889999999999999999977777654
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.8e-12 Score=106.58 Aligned_cols=192 Identities=19% Similarity=0.229 Sum_probs=141.8
Q ss_pred cccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCC--CCcccEEEe--cccccEEeEEEecCCCCeEEEEeCCCc
Q psy9316 45 KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG--DLNKEVVYR--GHTGSVDQLCWHATNPDLLSTASGDKT 120 (264)
Q Consensus 45 ~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~--~~~~~~~~~--~h~~~v~~i~~~~~~~~~l~s~s~dg~ 120 (264)
+-+.+|.+-|++|.|+.++++|++|+.|..+++|.++.-- ...+.+.+. .|.+.|.++.|.. +..++.+|+.+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcce
Confidence 3457899999999999999999999999999999976421 111222222 4668999999986 5578899999999
Q ss_pred EEEEECCCCCcc---------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCC
Q psy9316 121 VRIWDARTQKSQ---------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD 179 (264)
Q Consensus 121 i~vwd~~~~~~~---------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~ 179 (264)
|.+-|+++.+.. ..+++.+.++.+.+||.+...+....+...........+.|+|..+.
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 999999875421 25677788899999998765533333344445556778899999899
Q ss_pred EEEEEeCCCcEEEEeCCCCcceeE------eecCce---EEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 180 LLSTASGDKTVRIWDARTQKSQII------ATKGEN---INITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 180 ~i~s~~~dg~i~iwD~~t~~~~~~------~~~~~~---~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
+|++.+..+-+-+||.+.....+. ..+... .++.|+|+|+.+.+--....-.+||.-.
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S 275 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS 275 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence 999999999999999997653221 122222 3578999999887766566666666543
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.3e-12 Score=109.66 Aligned_cols=171 Identities=16% Similarity=0.346 Sum_probs=121.8
Q ss_pred EeecCCCeeEEEeecCceEEecccccccc-ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecc
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIK-EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH 95 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h 95 (264)
++.|.|.- +++++.||.||+|.....++ ++.....+|.|++|.|+.+.++-+ ..+.+.+-.+..+ .....+++|
T Consensus 111 RW~~dGtg-Llt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n---~k~i~WkAH 185 (737)
T KOG1524|consen 111 RWSPDGAG-LLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAAN---SKIIRWRAH 185 (737)
T ss_pred ccCCCCce-eeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccc---cceeEEecc
Confidence 34444432 46789999999997655554 455667899999999988776664 3456666554432 234568999
Q ss_pred cccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcC
Q psy9316 96 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 175 (264)
Q Consensus 96 ~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~ 175 (264)
.+-|.++.|++.. +++++|+.|-..++||..... ++ .-..|.-+|++++|+|
T Consensus 186 DGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~---Lf------------------------~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 186 DGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGAN---LF------------------------TSAAEEYAITSVAFNP 237 (737)
T ss_pred CcEEEEeecCccc-cceeecCCceeEEeecccCcc---cc------------------------cCChhccceeeeeecc
Confidence 9999999999865 799999999999999975321 11 1134677999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCeEEE
Q psy9316 176 TNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTF 232 (264)
Q Consensus 176 ~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~ 232 (264)
+ ..++.++ -++.++= ....+.+.+++|||||..+++|+..|.+.+
T Consensus 238 d--~~~~v~S-~nt~R~~---------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 238 E--KDYLLWS-YNTARFS---------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred c--cceeeee-eeeeeec---------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 6 3444443 3344411 112357899999999999999999988654
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.4e-12 Score=109.56 Aligned_cols=209 Identities=21% Similarity=0.265 Sum_probs=139.7
Q ss_pred EeecCCCeeEEEeecCceEEeccc--ccccccc-ccCCCCEEEEEECC--CCCeEEEEECCCcEEEEEeccCC-------
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEY-QAHGSKVHSVAWSC--DGRRLASGSFDKSVAIFALDKKG------- 84 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~-~~h~~~V~~l~~s~--~g~~l~s~s~dg~i~v~~~~~~~------- 84 (264)
.+.+.|+ ++++++-|.-+-+|+. .+.++.+ .+|...|.++.|-| ..+++++|+.|..|++||++..+
T Consensus 57 eWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~ 135 (758)
T KOG1310|consen 57 EWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG 135 (758)
T ss_pred eecCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC
Confidence 3444443 4445554555556655 3444444 48999999999998 45788899999999999987421
Q ss_pred CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEecc
Q psy9316 85 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164 (264)
Q Consensus 85 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h 164 (264)
.......+.+|...|..++--|.+++.+.+++.||+++.+|++....-. .++.+.+ .+. .+...
T Consensus 136 ~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~------p~~~~~~-------~l~---ny~~~ 199 (758)
T KOG1310|consen 136 MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN------PDEDCPS-------ILV---NYNPQ 199 (758)
T ss_pred ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC------ccccccH-------HHH---Hhchh
Confidence 1122334678999999999989888999999999999999998532110 0110000 000 00111
Q ss_pred ccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCC--------c----------ceeEeecC-----------c---eEEE
Q psy9316 165 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ--------K----------SQIIATKG-----------E---NINI 212 (264)
Q Consensus 165 ~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~--------~----------~~~~~~~~-----------~---~~~v 212 (264)
--...++..+|.++.+|+.|+.|-..++||.+-. . +.....++ . ..-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 1245678889999999999999999999995311 0 01111111 1 2347
Q ss_pred EEcCCCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 213 TWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 213 ~~sp~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
+|+|+|..|++.=....|+++||+.+..+.
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 899999999888888899999998755443
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.5e-12 Score=108.87 Aligned_cols=174 Identities=21% Similarity=0.267 Sum_probs=111.8
Q ss_pred CCCCeEEEEECCCcEEEEEeccCCCCcccEEEe--cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC---cceEE
Q psy9316 61 CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR--GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK---SQIML 135 (264)
Q Consensus 61 ~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~ 135 (264)
|++--++.|-.-|.+.+.+... .......... --...|+++.|-|.++.+++.+-.+|.+++||.+..- .....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchh-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 5566677776677777776432 1111111111 1236799999999888889888999999999874311 01010
Q ss_pred EeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEEE
Q psy9316 136 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENINIT 213 (264)
Q Consensus 136 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~ 213 (264)
+.- ......|-.......-++...+.--...|+.++|+| ++.+||+.+.||.+||||..+.+. .....-+...+|+
T Consensus 262 ~~k-~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvc 339 (636)
T KOG2394|consen 262 ALK-DGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVC 339 (636)
T ss_pred ccC-CCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEE
Confidence 000 011112211111111011111222235899999999 678999999999999999998774 2233456788999
Q ss_pred EcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 214 WAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 214 ~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
|||||+|+++|+.|+.|.||-..+
T Consensus 340 WSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 340 WSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred EcCCccEEEecCCcceEEEEEecc
Confidence 999999999999999999998654
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.5e-12 Score=111.33 Aligned_cols=182 Identities=19% Similarity=0.277 Sum_probs=132.3
Q ss_pred ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEecc---C--CCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCc
Q psy9316 46 EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDK---K--GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 120 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~---~--~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~ 120 (264)
++..|.+.|..++|.|-...|++++.||+|++|++.. . ...+....+++|.++|.|++..+ ..+.+++|+-||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCce
Confidence 5567888999999999999999999999999999832 1 22344456889999999999876 5578889999999
Q ss_pred EEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc
Q psy9316 121 VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200 (264)
Q Consensus 121 i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~ 200 (264)
|+.|++-..... +| .++. ....-++.+|++.|..+.+++.. +.|++++.||+++.|+......
T Consensus 368 I~~w~~p~n~dp-------~d----s~dp-----~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 368 IRCWNLPPNQDP-------DD----SYDP-----SVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred eeeeccCCCCCc-------cc----ccCc-----chhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc
Confidence 999987522111 00 0110 11112467899999999999754 5688999999999998743221
Q ss_pred ee-------------------------------------------Eeec----------CceEEEEEcCCCCEEEEeeCC
Q psy9316 201 QI-------------------------------------------IATK----------GENINITWAPNGNTIAVGNKE 227 (264)
Q Consensus 201 ~~-------------------------------------------~~~~----------~~~~~v~~sp~g~~la~gs~d 227 (264)
.. .... ..+..+.+.|.+....++-.|
T Consensus 431 ~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed 510 (577)
T KOG0642|consen 431 CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHED 510 (577)
T ss_pred cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccC
Confidence 00 0000 012347788999999999999
Q ss_pred CeEEEEEcccCCCCCCCc
Q psy9316 228 DLVTFIDVVKSLPPRERT 245 (264)
Q Consensus 228 ~~i~~~d~~~~~~~~~~~ 245 (264)
+.|+++|...+...++..
T Consensus 511 ~~Ir~~dn~~~~~l~s~~ 528 (577)
T KOG0642|consen 511 RSIRFFDNKTGKILHSMV 528 (577)
T ss_pred Cceecccccccccchhee
Confidence 999999988776666443
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-10 Score=99.35 Aligned_cols=194 Identities=16% Similarity=0.251 Sum_probs=134.8
Q ss_pred ccccccccccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCcccEEEeccc-ccEEeEEEecCCCCeEEEE
Q psy9316 38 FNTHNDIKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT-GSVDQLCWHATNPDLLSTA 115 (264)
Q Consensus 38 ~~~~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~l~s~ 115 (264)
|-.....-.....+..|....|+| +.+.|++.+. +.+.+|+....+-.+..-+++.+. ..|.+++|.+.+ + +++|
T Consensus 187 Wqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng-d-viTg 263 (626)
T KOG2106|consen 187 WQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG-D-VITG 263 (626)
T ss_pred chhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC-C-EEee
Confidence 333333334445567788999999 5566666654 789999876544333334455443 569999998855 3 5689
Q ss_pred eCCCcEEEEECCCCCcc------------------eEEEeecCCCcEEEEEeccCCC----c-------cc---------
Q psy9316 116 SGDKTVRIWDARTQKSQ------------------IMLASGSFDKSVAIFALDKKGD----L-------NK--------- 157 (264)
Q Consensus 116 s~dg~i~vwd~~~~~~~------------------~~~~~~~~d~~i~i~~~~~~~~----~-------~~--------- 157 (264)
..+|.|.+|+..+.+.. -.+++|+.|+.|..||-+.+.. + +.
T Consensus 264 DS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~ 343 (626)
T KOG2106|consen 264 DSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL 343 (626)
T ss_pred cCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence 99999999998654311 1356799999999998432110 0 00
Q ss_pred -----------------eEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecCceEEEEEcCCCCE
Q psy9316 158 -----------------EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNT 220 (264)
Q Consensus 158 -----------------~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~ 220 (264)
..+..+|......++.+|.+ ..+++++.|+.+++|+ +.+..-......+..+++|.|.| .
T Consensus 344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~ 420 (626)
T KOG2106|consen 344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-V 420 (626)
T ss_pred EeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc-CCceeEEEEecCceeEeeccCcc-e
Confidence 01224577777888888854 5778999999999999 33323334455678899999999 9
Q ss_pred EEEeeCCCeEEEEEccc
Q psy9316 221 IAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 221 la~gs~d~~i~~~d~~~ 237 (264)
+|+|+..|...++|.++
T Consensus 421 va~Gt~~G~w~V~d~e~ 437 (626)
T KOG2106|consen 421 VAVGTATGRWFVLDTET 437 (626)
T ss_pred EEEeeccceEEEEeccc
Confidence 99999999999999875
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-11 Score=99.24 Aligned_cols=186 Identities=21% Similarity=0.335 Sum_probs=123.5
Q ss_pred ccccccCCCCEEEEEECC-CCCeEEEEECC-------CcEEEEEeccCCCCcc------cEEEe-cccccEEeEEEecCC
Q psy9316 44 IKEYQAHGSKVHSVAWSC-DGRRLASGSFD-------KSVAIFALDKKGDLNK------EVVYR-GHTGSVDQLCWHATN 108 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~-~g~~l~s~s~d-------g~i~v~~~~~~~~~~~------~~~~~-~h~~~v~~i~~~~~~ 108 (264)
.+.|..|-+.|..|+-+| +.+.|++...+ ..+.+|.+.++..... ...+. .+-+.+.|+-|.|..
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 356778889999999999 55556655432 2478998765432211 11122 456789999999954
Q ss_pred CCeEEEEeCCCcEEEEECCCCCcce-EE-EeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcC-CCCCEEEEEe
Q psy9316 109 PDLLSTASGDKTVRIWDARTQKSQI-ML-ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA-TNPDLLSTAS 185 (264)
Q Consensus 109 ~~~l~s~s~dg~i~vwd~~~~~~~~-~~-~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~-~~~~~i~s~~ 185 (264)
..+++- .|..|.+|++....... .+ ..++ ..|......-+|+| .++..+++ .
T Consensus 136 -~klasm-~dn~i~l~~l~ess~~vaev~ss~s----------------------~e~~~~ftsg~WspHHdgnqv~t-t 190 (370)
T KOG1007|consen 136 -DKLASM-DDNNIVLWSLDESSKIVAEVLSSES----------------------AEMRHSFTSGAWSPHHDGNQVAT-T 190 (370)
T ss_pred -CeeEEe-ccCceEEEEcccCcchheeeccccc----------------------ccccceecccccCCCCccceEEE-e
Confidence 556544 38899999998655321 11 1111 12334556668998 45556655 5
Q ss_pred CCCcEEEEeCCCCcceeEe---ecCceEEEEEcCCCC-EEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeeecc
Q psy9316 186 GDKTVRIWDARTQKSQIIA---TKGENINITWAPNGN-TIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSLWG 260 (264)
Q Consensus 186 ~dg~i~iwD~~t~~~~~~~---~~~~~~~v~~sp~g~-~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~~~ 260 (264)
.|+++..||.++..+.... +...+.+++|+|+.+ +|++|+.|+.|+|||+|..-.+ ..++-+|.+ |||.
T Consensus 191 ~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p---v~el~~HsH---WvW~ 263 (370)
T KOG1007|consen 191 SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP---VQELPGHSH---WVWA 263 (370)
T ss_pred CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc---ccccCCCce---EEEE
Confidence 7999999999987754333 344578899999887 5589999999999999864433 335667765 5564
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-11 Score=98.64 Aligned_cols=166 Identities=23% Similarity=0.356 Sum_probs=123.4
Q ss_pred EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------------ceEEEeecCCCcEEE
Q psy9316 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------------QIMLASGSFDKSVAI 146 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------------~~~~~~~~~d~~i~i 146 (264)
..+|..-|.++.|.+.+ +.+++|+.|+++++||.+.... ...++++++|+++.|
T Consensus 9 ~s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred ccCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 44788889999998855 7899999999999999765321 125789999999999
Q ss_pred EEeccCC------CccceEEEeccccceeeEEEcCCCC-CEEEEEeCCCcEEEEeCCCCc------ce--eE---e----
Q psy9316 147 FALDKKG------DLNKEVVYRGHTGSVDQLCWHATNP-DLLSTASGDKTVRIWDARTQK------SQ--II---A---- 204 (264)
Q Consensus 147 ~~~~~~~------~~~~~~~~~~h~~~i~~i~~~~~~~-~~i~s~~~dg~i~iwD~~t~~------~~--~~---~---- 204 (264)
|...... ...+..++....+.|..++|.|... -.+++++.||.+|||++-.-. .+ ++ .
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 9874322 1223344556677899999999643 468999999999999875421 11 01 1
Q ss_pred ecCceEEEEEcC---CCCEEEEeeCC-----CeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 205 TKGENINITWAP---NGNTIAVGNKE-----DLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 205 ~~~~~~~v~~sp---~g~~la~gs~d-----~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
......++.|+| ...++|+|+.+ +.+.||.-.+...+..++.++.+|.--+|.+
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di 229 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDI 229 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceee
Confidence 122356899997 34689999976 4789999888888889999999988777765
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-10 Score=101.55 Aligned_cols=206 Identities=13% Similarity=0.155 Sum_probs=120.4
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEEEC---CCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCC-
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASGSF---DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK- 119 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~---dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg- 119 (264)
.+.+..+.+.+...+|+|||+.|+..+. +..|.+|++.. +.... +......+....|+|++..++++.+.+|
T Consensus 191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~~~~---l~~~~~~~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAVRQ---VASFPRHNGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CCeEE---ccCCCCCcCCeEECCCCCEEEEEEcCCCC
Confidence 3444556678999999999999987653 34688888754 22221 1122233456789997766665556566
Q ss_pred -cEEEEECCCCCcce------------------EE-EeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCC
Q psy9316 120 -TVRIWDARTQKSQI------------------ML-ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD 179 (264)
Q Consensus 120 -~i~vwd~~~~~~~~------------------~~-~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~ 179 (264)
.|++||+++++... .+ .+...++...||.++..+......+ .+........|+|++..
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt--~~~~~~~~~~~SpDG~~ 344 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT--WEGSQNQDADVSSDGKF 344 (429)
T ss_pred cEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee--cCCCCccCEEECCCCCE
Confidence 48889987653211 12 2222334556666554332222112 22234556889986644
Q ss_pred EEEEEeCC--CcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCe---EEEEEcccCCCCCCCcccCccccee
Q psy9316 180 LLSTASGD--KTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDL---VTFIDVVKSLPPRERTLTSRGHLME 254 (264)
Q Consensus 180 ~i~s~~~d--g~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~---i~~~d~~~~~~~~~~~~~~~~h~~~ 254 (264)
++.+...+ ..|.+||+.++............+..|+|||++|+.++.++. ++++++..... .++.+|..+
T Consensus 345 Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~-----~~l~~~~~~ 419 (429)
T PRK03629 345 MVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-----ARLPATDGQ 419 (429)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe-----EECccCCCC
Confidence 44433333 458889998876543332223456889999999999988775 66777642221 224455555
Q ss_pred eeee-cc
Q psy9316 255 TRSL-WG 260 (264)
Q Consensus 255 ~~~~-~~ 260 (264)
++.. |+
T Consensus 420 ~~~p~Ws 426 (429)
T PRK03629 420 VKFPAWS 426 (429)
T ss_pred cCCcccC
Confidence 5533 54
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=9e-11 Score=99.46 Aligned_cols=212 Identities=17% Similarity=0.226 Sum_probs=140.4
Q ss_pred CCCceEeecCCCeeEEEeecCceEEeccc--------cccccccc-cCCCCEEEEEECCCCCeEEEEECCCcEEEEEecc
Q psy9316 12 KSPEYKLLPSGSQFHLVCKIDDYVKHFNT--------HNDIKEYQ-AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDK 82 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--------~~~~~~~~-~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~ 82 (264)
||.|++++++|+. |--..+|.+ ++.+.... .|.+.|.||+|+....++++|+.+++|..-|++.
T Consensus 64 FS~N~~~L~SGGD-------D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt 136 (609)
T KOG4227|consen 64 FSHNDRFLASGGD-------DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET 136 (609)
T ss_pred eccCCeEEeecCC-------cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc
Confidence 5677888888764 222333332 23343333 3558999999999999999999999999999876
Q ss_pred CCCCcccEEEeccc---ccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-----------------------ceEEE
Q psy9316 83 KGDLNKEVVYRGHT---GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-----------------------QIMLA 136 (264)
Q Consensus 83 ~~~~~~~~~~~~h~---~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-----------------------~~~~~ 136 (264)
...+ ..-.|+ +.|+.+..+|.+ +.+++.+.+|.|.+||.+..++ ..+++
T Consensus 137 ~qsi----~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~ 211 (609)
T KOG4227|consen 137 KQSI----YVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALIL 211 (609)
T ss_pred ceee----eeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEE
Confidence 4322 122344 489999999975 7888999999999999976542 22566
Q ss_pred eecCCCcEEEEEeccCCCccc-eEEEecc---ccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeec----Cc
Q psy9316 137 SGSFDKSVAIFALDKKGDLNK-EVVYRGH---TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK----GE 208 (264)
Q Consensus 137 ~~~~d~~i~i~~~~~~~~~~~-~~~~~~h---~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~----~~ 208 (264)
+.+..+-+.+||.+....... .--+.+- ....+.+.|+|.+..+ .+.-....-.+||+-++.+.+.... +.
T Consensus 212 ~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~-msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY 290 (609)
T KOG4227|consen 212 VNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQF-MSIRRGKCPLYFDFISQRCFVLKSDHNPNGY 290 (609)
T ss_pred eccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCee-hhhhccCCCEEeeeecccceeEeccCCCCcc
Confidence 777777788898875332111 0001111 2234678899866544 4555555666789988776433222 22
Q ss_pred -----eEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 209 -----NINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 209 -----~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
+-+++|.-|- .+++|+.+=-|++|.+..
T Consensus 291 ~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 291 CNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPR 323 (609)
T ss_pred eeeeeeeeeeeecce-eeeccCcccceEEEecCC
Confidence 2246676544 489999888899999864
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.8e-12 Score=111.98 Aligned_cols=149 Identities=15% Similarity=0.328 Sum_probs=116.3
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 132 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 132 (264)
.|..++|.|||..|+.+ .+..+.+||.+..+.+ ..+++|.+.|.+++|+. ++..++||+.|+.|.+|.-+-...
T Consensus 14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~ll---qtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLL---QPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred chheeEECCCCceEEEe-cCCEEEEEeCCCcccc---cccccccceEEEEEEcc-CCceeccCCCceeEEEecccccce-
Confidence 78999999999998887 4567999998754333 34789999999999987 457899999999999998642110
Q ss_pred eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecCceEEE
Q psy9316 133 IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINI 212 (264)
Q Consensus 133 ~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v 212 (264)
.--.|.+.|.++.|+|.+ ..++|++ =...-+|....+..+.......+.++
T Consensus 88 ---------------------------LkYSH~D~IQCMsFNP~~-h~LasCs-LsdFglWS~~qK~V~K~kss~R~~~C 138 (1081)
T KOG1538|consen 88 ---------------------------LKYSHNDAIQCMSFNPIT-HQLASCS-LSDFGLWSPEQKSVSKHKSSSRIICC 138 (1081)
T ss_pred ---------------------------eeeccCCeeeEeecCchH-HHhhhcc-hhhccccChhhhhHHhhhhheeEEEe
Confidence 113588899999999964 4566654 44778897776655444455678899
Q ss_pred EEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 213 TWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 213 ~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
+|..||+|++.|-.||+|.+=+..
T Consensus 139 sWtnDGqylalG~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 139 SWTNDGQYLALGMFNGTISIRNKN 162 (1081)
T ss_pred eecCCCcEEEEeccCceEEeecCC
Confidence 999999999999999999998644
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.9e-10 Score=96.05 Aligned_cols=188 Identities=28% Similarity=0.439 Sum_probs=131.6
Q ss_pred eeEEEeecCceEEeccccc---cccccccCC-CCEEEEEE-CCCCC-eEEEEEC-CCcEEEEEeccCCCCcccEEEeccc
Q psy9316 24 QFHLVCKIDDYVKHFNTHN---DIKEYQAHG-SKVHSVAW-SCDGR-RLASGSF-DKSVAIFALDKKGDLNKEVVYRGHT 96 (264)
Q Consensus 24 ~~~~~~~~d~~~~~~~~~~---~~~~~~~h~-~~V~~l~~-s~~g~-~l~s~s~-dg~i~v~~~~~~~~~~~~~~~~~h~ 96 (264)
......+.|+.+..|.... .+..+..+. ..+..+.+ ++++. .++..+. |+.+.+|+... .......+..|.
T Consensus 78 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~ 155 (466)
T COG2319 78 ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST--PGKLIRTLEGHS 155 (466)
T ss_pred cEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC--CCeEEEEEecCc
Confidence 3344556788888876543 355565544 36777777 88887 5555444 99999999864 112234467899
Q ss_pred ccEEeEEEecCCCCeEEEEeC-CCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcC
Q psy9316 97 GSVDQLCWHATNPDLLSTASG-DKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 175 (264)
Q Consensus 97 ~~v~~i~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~ 175 (264)
..|..++|+|.+. .+++++. |+.+++|++...+.. ..+.+|...|..+.|+|
T Consensus 156 ~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~v~~~~~~~ 208 (466)
T COG2319 156 ESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPL--------------------------STLAGHTDPVSSLAFSP 208 (466)
T ss_pred ccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceE--------------------------EeeccCCCceEEEEEcC
Confidence 9999999999664 6767775 999999999762211 12344788999999997
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcceeEeecC--ceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 176 TNPDLLSTASGDKTVRIWDARTQKSQIIATKG--ENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 176 ~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~--~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
.+..++++++.|+.+++||...+......... ...-..|+|++..+++++.|+.+++||+.....
T Consensus 209 ~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 65546666699999999998865543211111 111127999999999999999999999886554
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-11 Score=103.48 Aligned_cols=161 Identities=17% Similarity=0.240 Sum_probs=114.6
Q ss_pred EeecCceEEecccccc--ccccccC-CCCEEEEEECCCCCe-EEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEE
Q psy9316 28 VCKIDDYVKHFNTHND--IKEYQAH-GSKVHSVAWSCDGRR-LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103 (264)
Q Consensus 28 ~~~~d~~~~~~~~~~~--~~~~~~h-~~~V~~l~~s~~g~~-l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~ 103 (264)
+.+.-|.|-++.+.+. ..+|..- ...|.-|.|+|..+. |.+++++|.|.+||+.. ........+.|.++...+|
T Consensus 138 svs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g--~sp~~~~~~~HsAP~~gic 215 (673)
T KOG4378|consen 138 SVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG--MSPIFHASEAHSAPCRGIC 215 (673)
T ss_pred EeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC--CCcccchhhhccCCcCcce
Confidence 3444454544444333 3345433 334668899997765 55689999999999863 2222233568999999999
Q ss_pred EecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEE
Q psy9316 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST 183 (264)
Q Consensus 104 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s 183 (264)
|+|.+..+|++.+.|+.|.+||.++++....+ ....+...++|.++ +.+++.
T Consensus 216 fspsne~l~vsVG~Dkki~~yD~~s~~s~~~l---------------------------~y~~Plstvaf~~~-G~~L~a 267 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYDKKINIYDIRSQASTDRL---------------------------TYSHPLSTVAFSEC-GTYLCA 267 (673)
T ss_pred ecCCccceEEEecccceEEEeeccccccccee---------------------------eecCCcceeeecCC-ceEEEe
Confidence 99999999999999999999999865422111 12347788999874 578899
Q ss_pred EeCCCcEEEEeCCCCcc---eeEeecCceEEEEEcCCC
Q psy9316 184 ASGDKTVRIWDARTQKS---QIIATKGENINITWAPNG 218 (264)
Q Consensus 184 ~~~dg~i~iwD~~t~~~---~~~~~~~~~~~v~~sp~g 218 (264)
|...|.|..||++.... ....+...+.+++|-|.-
T Consensus 268 G~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 268 GNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999999998763 233556678999997654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-09 Score=94.24 Aligned_cols=204 Identities=14% Similarity=0.209 Sum_probs=124.5
Q ss_pred ecCceEEecccc-----ccccccccCCCCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEecccccEEeEE
Q psy9316 30 KIDDYVKHFNTH-----NDIKEYQAHGSKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103 (264)
Q Consensus 30 ~~d~~~~~~~~~-----~~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~ 103 (264)
..++.|..|+.. +.++++. +.+....+.++|++++|+.++ .++.|.+|+++..+........ ...+....+.
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~ 86 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHIS 86 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEE
Confidence 335656666542 1334443 345678899999999988765 4788999998743333211111 1223466789
Q ss_pred EecCCCCeEEEEe-CCCcEEEEECCCCC----c-------------------ceEEEeecCCCcEEEEEeccCCCccce-
Q psy9316 104 WHATNPDLLSTAS-GDKTVRIWDARTQK----S-------------------QIMLASGSFDKSVAIFALDKKGDLNKE- 158 (264)
Q Consensus 104 ~~~~~~~~l~s~s-~dg~i~vwd~~~~~----~-------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~- 158 (264)
++|++. ++++++ .++.+.+||++... . ...+++...++.|.+|+++..+.+...
T Consensus 87 ~~~~g~-~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 87 TDHQGR-FLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred ECCCCC-EEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence 998664 555554 58999999986311 0 013355556788999998764433210
Q ss_pred ---EEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCC--Cccee-Ee---ec------CceEEEEEcCCCCEEEE
Q psy9316 159 ---VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART--QKSQI-IA---TK------GENINITWAPNGNTIAV 223 (264)
Q Consensus 159 ---~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t--~~~~~-~~---~~------~~~~~v~~sp~g~~la~ 223 (264)
..... ......+.|+|++..++++...+++|.+||+.. ++... .. .+ .....+.++|+|+++++
T Consensus 166 ~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv 244 (330)
T PRK11028 166 PAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA 244 (330)
T ss_pred CCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence 01111 123456899986544444444499999999974 22211 11 11 11235889999999988
Q ss_pred ee-CCCeEEEEEccc
Q psy9316 224 GN-KEDLVTFIDVVK 237 (264)
Q Consensus 224 gs-~d~~i~~~d~~~ 237 (264)
+. .++.|.+|++..
T Consensus 245 ~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 245 CDRTASLISVFSVSE 259 (330)
T ss_pred ecCCCCeEEEEEEeC
Confidence 85 478999999864
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=113.11 Aligned_cols=202 Identities=23% Similarity=0.342 Sum_probs=147.8
Q ss_pred CeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEE
Q psy9316 23 SQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 100 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~ 100 (264)
+...++++-|-.+|+|.+. .++....||.+.|+.++.+.+.-.++++|.|..|++|-+... ....++.+|++.|+
T Consensus 202 g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~---~pvsvLrghtgavt 278 (1113)
T KOG0644|consen 202 GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG---APVSVLRGHTGAVT 278 (1113)
T ss_pred cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC---chHHHHhcccccee
Confidence 4556777888899999764 567788999999999999999999999999999999986532 22345789999999
Q ss_pred eEEEecCCCCeEEEEeCCCcEEEEECCCCCc-----------------------ceEEEeecCCCcEEEE----------
Q psy9316 101 QLCWHATNPDLLSTASGDKTVRIWDARTQKS-----------------------QIMLASGSFDKSVAIF---------- 147 (264)
Q Consensus 101 ~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-----------------------~~~~~~~~~d~~i~i~---------- 147 (264)
+++|+|.. +.+.||++++||.+-... ..-+.+|+.|+.-..|
T Consensus 279 aiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~ 353 (1113)
T KOG0644|consen 279 AIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSN 353 (1113)
T ss_pred eeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhcc
Confidence 99999843 778999999999871100 0012333333322211
Q ss_pred ---------------------------EeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc
Q psy9316 148 ---------------------------ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200 (264)
Q Consensus 148 ---------------------------~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~ 200 (264)
.+... . ......+|...+..+.++|.++.+..+++-||+..|||+-.+..
T Consensus 354 ~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~--l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 354 LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-Q--LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred ceEEEeccccccccceeeeeeeEeeeeecccc-h--hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 11100 0 01123568889999999999988888999999999999987654
Q ss_pred ee-E-eecCceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q psy9316 201 QI-I-ATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 201 ~~-~-~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~ 235 (264)
.. . ...+....-+||++|..++..-.-|.++|...
T Consensus 431 ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 431 IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred ceeeecccceeeccccCCCCceEecCCCCCceEEecc
Confidence 22 2 22445667789999999999888888898874
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-09 Score=97.01 Aligned_cols=190 Identities=14% Similarity=0.192 Sum_probs=115.7
Q ss_pred ccccccccCCCCEEEEEECCCCCeEEEEEC---CCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCC
Q psy9316 42 NDIKEYQAHGSKVHSVAWSCDGRRLASGSF---DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD 118 (264)
Q Consensus 42 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~---dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~d 118 (264)
...+.+..|.+.+.+.+|+|||+.|+..+. +..|.+|++.. +.. ..+..+.+.+....|+|++..++++.+.+
T Consensus 192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~~---~~l~~~~g~~~~~~~SPDG~~la~~~~~~ 267 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQR---ELVGNFPGMTFAPRFSPDGRKVVMSLSQG 267 (435)
T ss_pred CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-CcE---EEeecCCCcccCcEECCCCCEEEEEEecC
Confidence 344556678889999999999999988764 35799998854 222 22344556677889999876666777777
Q ss_pred Cc--EEEEECCCCCcce------------------EEE-eecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCC
Q psy9316 119 KT--VRIWDARTQKSQI------------------MLA-SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 177 (264)
Q Consensus 119 g~--i~vwd~~~~~~~~------------------~~~-~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~ 177 (264)
+. |++||+++++... .++ +...++...||.++..+..... +..+...+....|+|++
T Consensus 268 g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~--lt~~~~~~~~~~~SpdG 345 (435)
T PRK05137 268 GNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR--ISFGGGRYSTPVWSPRG 345 (435)
T ss_pred CCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE--eecCCCcccCeEECCCC
Confidence 66 6677887643211 122 2222333344444333221111 11223445667899976
Q ss_pred CCEEEEEeCC--CcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCC------CeEEEEEccc
Q psy9316 178 PDLLSTASGD--KTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKE------DLVTFIDVVK 237 (264)
Q Consensus 178 ~~~i~s~~~d--g~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d------~~i~~~d~~~ 237 (264)
..++++.... ..|.+||+.++.............++|+|||+.|+..+.+ ..++++|+..
T Consensus 346 ~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 346 DLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 5444433222 3678888866554333222335578999999998776553 3578888754
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-10 Score=103.45 Aligned_cols=104 Identities=17% Similarity=0.249 Sum_probs=74.0
Q ss_pred EeecCCCeeEEEeecCceEEeccccc------cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccE
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHN------DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV 90 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~ 90 (264)
++.|.+. ...++-.||-|.+|+.-. ..+.+..|...|+++.|+++|.+|++||..+.+.+|.+.++++. +
T Consensus 212 ~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq---f 287 (792)
T KOG1963|consen 212 ALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ---F 287 (792)
T ss_pred Eeccccc-eEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc---c
Confidence 3444443 233445578887775432 35567889999999999999999999999999999998875421 1
Q ss_pred EEecccccEEeEEEecCCCCeEEEEeCCCcEEEEEC
Q psy9316 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 126 (264)
Q Consensus 91 ~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~ 126 (264)
+.--.++|..+.++|++ .+.+....|..|.+..+
T Consensus 288 -LPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 288 -LPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKA 321 (792)
T ss_pred -ccccCCeeEEEEEcCCC-CeEEEEecCceEEEEec
Confidence 22346778888888755 45555666887777644
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.2e-10 Score=93.30 Aligned_cols=188 Identities=21% Similarity=0.379 Sum_probs=133.8
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccCCC---------CcccEEEec-ccccEEeEEEecC------CCCeEEEEe
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD---------LNKEVVYRG-HTGSVDQLCWHAT------NPDLLSTAS 116 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~---------~~~~~~~~~-h~~~v~~i~~~~~------~~~~l~s~s 116 (264)
....+.|+|||..|++-+.|..+.+|++-.... .++...++- -...|.+.+|-+. +..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 345678999999999999999999998653211 111112221 2345788888631 346889999
Q ss_pred CCCcEEEEECCCCCcce-----------------------EEEeecCCCcEEEEEe-ccCCCccceEEE----eccccce
Q psy9316 117 GDKTVRIWDARTQKSQI-----------------------MLASGSFDKSVAIFAL-DKKGDLNKEVVY----RGHTGSV 168 (264)
Q Consensus 117 ~dg~i~vwd~~~~~~~~-----------------------~~~~~~~d~~i~i~~~-~~~~~~~~~~~~----~~h~~~i 168 (264)
++.-|++||.-+++... .-+.+++...|++|+. ++........++ .+..+-|
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999998876422 1134567778999998 444333222221 1234568
Q ss_pred eeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc-eeE-eecCceEEEEEcCCCCEEEEee-CCCeEEEEEcccCCC
Q psy9316 169 DQLCWHATNPDLLSTASGDKTVRIWDARTQKS-QII-ATKGENINITWAPNGNTIAVGN-KEDLVTFIDVVKSLP 240 (264)
Q Consensus 169 ~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~-~~~-~~~~~~~~v~~sp~g~~la~gs-~d~~i~~~d~~~~~~ 240 (264)
.+++|+|.+...++.++-..++-||+-..+.. .+. .+.+.++-+.|.++|+.|.+|+ .|..|..||+|....
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 89999999988999999999999998777664 222 3456788999999999999885 488999999986433
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-09 Score=90.46 Aligned_cols=158 Identities=18% Similarity=0.239 Sum_probs=107.7
Q ss_pred CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEE-e-CCCcEEEEECCC
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA-S-GDKTVRIWDART 128 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~-s-~dg~i~vwd~~~ 128 (264)
...|.++.++ .++|+..-.+ .|.|||+..-.-+........+...+.+++.+..+ .+++-- + ..|.|.+||+.+
T Consensus 87 pt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 87 PTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred CCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEEccc
Confidence 3578888886 5677776554 49999986422111111122233345444444422 345432 2 256777777654
Q ss_pred CCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcE-EEEeCCCCcceeEeecC
Q psy9316 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV-RIWDARTQKSQIIATKG 207 (264)
Q Consensus 129 ~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i-~iwD~~t~~~~~~~~~~ 207 (264)
.+ ....+.+|.+++-+++|++ ++.+|||+++.|+| ||+.+.+++...++-++
T Consensus 163 l~--------------------------~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG 215 (391)
T KOG2110|consen 163 LQ--------------------------PVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRG 215 (391)
T ss_pred ce--------------------------eeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCC
Confidence 32 2234578999999999998 46899999999985 69999998865444333
Q ss_pred ----ceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 208 ----ENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 208 ----~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
.+.+++|+|++++|++.++.++|.+|.+.+-.
T Consensus 216 ~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 216 TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 46789999999999999999999999988644
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-11 Score=104.37 Aligned_cols=95 Identities=24% Similarity=0.436 Sum_probs=76.0
Q ss_pred CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
.+.|+..+|+|||++||+.|.||.++||+++.. ....+++..-+...|++|+|++ +++++|++|-.|.||-+.-++
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCc-cEEEecCCcceEEEEEeccce
Confidence 357899999999999999999999999998752 2223355667789999999955 799999999999999986433
Q ss_pred cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcC
Q psy9316 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 175 (264)
Q Consensus 131 ~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~ 175 (264)
.++ ...+|.+.|..++|.|
T Consensus 366 ---VVA-----------------------RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 366 ---VVA-----------------------RGQGHKSWVSVVAFDP 384 (636)
T ss_pred ---EEE-----------------------eccccccceeeEeecc
Confidence 111 1257999999999987
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-09 Score=98.17 Aligned_cols=197 Identities=14% Similarity=0.232 Sum_probs=117.9
Q ss_pred EEeccc-cccccccccCCCCEEEEEECCCCCeEEEEECC---CcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCC
Q psy9316 35 VKHFNT-HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD---KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD 110 (264)
Q Consensus 35 ~~~~~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d---g~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 110 (264)
+++++. ....+.+..+...+...+|+|||+.|+..+.+ ..|.+|++.. +... .+....+......|+|++..
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~~---~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQRE---LVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCEE---EeccCCCCccCceECCCCCE
Confidence 444443 23345566677789999999999999988754 3588888754 2211 12233444557789998766
Q ss_pred eEEEEeCCC--cEEEEECCCCCcce-------------------EEEeecCCCcEEEEEeccCCCccceEEEecccccee
Q psy9316 111 LLSTASGDK--TVRIWDARTQKSQI-------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169 (264)
Q Consensus 111 ~l~s~s~dg--~i~vwd~~~~~~~~-------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~ 169 (264)
++++.+.+| .|++||+.+++... ++.+...++...+|.++..+......++.+ ....
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g--~~~~ 339 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG--NYNA 339 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC--CCcc
Confidence 666767666 48999987654211 122222334445555443222111122222 2334
Q ss_pred eEEEcCCCCCEEEEEeCCC--cEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCC---CeEEEEEccc
Q psy9316 170 QLCWHATNPDLLSTASGDK--TVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKE---DLVTFIDVVK 237 (264)
Q Consensus 170 ~i~~~~~~~~~i~s~~~dg--~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d---~~i~~~d~~~ 237 (264)
...|+|++..++++...++ .|.+||+.+++..............|+|||++++..+.+ ..++++++..
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 6789986654444333333 689999988765433332234567999999998887764 4578888743
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-09 Score=96.48 Aligned_cols=186 Identities=19% Similarity=0.272 Sum_probs=112.8
Q ss_pred cccccccCCCCEEEEEECCCCCeEEEEECC---CcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCC
Q psy9316 43 DIKEYQAHGSKVHSVAWSCDGRRLASGSFD---KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 119 (264)
Q Consensus 43 ~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d---g~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg 119 (264)
..+.+..+.+.+.+.+|+|||+.|+..+.+ ..|.+||+.. +... .+....+.+....|+|++..++++.+.+|
T Consensus 187 ~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~~---~l~~~~g~~~~~~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 187 NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRRR---VVANFKGSNSAPAWSPDGRTLAVALSRDG 262 (427)
T ss_pred CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCEE---EeecCCCCccceEECCCCCEEEEEEccCC
Confidence 334455677889999999999999887753 3488888764 2211 12233345667899998766666778888
Q ss_pred cEEEEE--CCCCCcc-------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCC
Q psy9316 120 TVRIWD--ARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 178 (264)
Q Consensus 120 ~i~vwd--~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~ 178 (264)
...+|. +.++... .++.+...++...||.++..+......++.+ .......|+|++
T Consensus 263 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g--~~~~~~~~SpDG- 339 (427)
T PRK02889 263 NSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG--SYNTSPRISPDG- 339 (427)
T ss_pred CceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC--CCcCceEECCCC-
Confidence 866664 4332210 0122223345566666654332222222221 223456899865
Q ss_pred CEEEEEeCCC---cEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCC---eEEEEEc
Q psy9316 179 DLLSTASGDK---TVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKED---LVTFIDV 235 (264)
Q Consensus 179 ~~i~s~~~dg---~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~---~i~~~d~ 235 (264)
..|+..+.++ .|.+||+.+++............++|+|||+.|+..+.++ .+++.++
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 4555444443 6999999887654333223345689999999998887655 3666665
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.7e-12 Score=114.72 Aligned_cols=119 Identities=33% Similarity=0.596 Sum_probs=97.3
Q ss_pred cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEE
Q psy9316 43 DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122 (264)
Q Consensus 43 ~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~ 122 (264)
.++.+.+|...|.|..|+.-|.+|++|+.|-.++||..+. +.. .....+|.+.+++++.+. +..+++++|.|..|+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~--lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARC--LASCRGHSGDITDLAVSS-NNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccc-hhh--hccCCCCccccchhccch-hhhhhhhcccCceEE
Confidence 3556789999999999999999999999999999998654 221 234679999999999865 445778899999999
Q ss_pred EEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCC
Q psy9316 123 IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 196 (264)
Q Consensus 123 vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~ 196 (264)
+|-+..+... ..+++|++.|++|+|+|.. +.+.||++++||.+
T Consensus 258 vWrl~~~~pv--------------------------svLrghtgavtaiafsP~~-----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 258 VWRLPDGAPV--------------------------SVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR 300 (1113)
T ss_pred EEecCCCchH--------------------------HHHhccccceeeeccCccc-----cCCCCCceEecccc
Confidence 9998765422 1347899999999999843 66889999999997
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-09 Score=87.23 Aligned_cols=161 Identities=15% Similarity=0.212 Sum_probs=112.2
Q ss_pred CcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc---------------------
Q psy9316 73 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--------------------- 131 (264)
Q Consensus 73 g~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------------- 131 (264)
..+.||| +.......+ + ....+|..+++.+ ..++. =...+|+||.+.....
T Consensus 75 NkviIWD-D~k~~~i~e--l-~f~~~I~~V~l~r---~riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 75 NKVIIWD-DLKERCIIE--L-SFNSEIKAVKLRR---DRIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS 146 (346)
T ss_pred ceEEEEe-cccCcEEEE--E-EeccceeeEEEcC---CeEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence 5699998 332222211 2 3567899998864 23433 3467899998753210
Q ss_pred --ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCc-EEEEeCCCCcceeEeec--
Q psy9316 132 --QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT-VRIWDARTQKSQIIATK-- 206 (264)
Q Consensus 132 --~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~-i~iwD~~t~~~~~~~~~-- 206 (264)
..+...|-.-|.++|.++...... ......+|.+.|.+++.+- ++.++||++..|+ |||||.+++....+.-.
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~ 224 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPN-APSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGV 224 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcC-CceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCC
Confidence 012223445578999888654321 2346689999999999986 5689999999998 57999999986444332
Q ss_pred --CceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCC
Q psy9316 207 --GENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRE 243 (264)
Q Consensus 207 --~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~ 243 (264)
..+.+++|||+..+||++|+-|++.+|.+++....++
T Consensus 225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~ 263 (346)
T KOG2111|consen 225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTED 263 (346)
T ss_pred chheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcc
Confidence 3578999999999999999999999999987544333
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-10 Score=94.20 Aligned_cols=167 Identities=16% Similarity=0.315 Sum_probs=113.8
Q ss_pred CCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe-cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 52 SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR-GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
..+..++|++.-.-++.+..|..|++|+-+. .. ...++ .-...|++++|-|-....++.|+.. -|++|......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss--t~--pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tl 173 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS--TC--PTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTL 173 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC--CC--CceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccc
Confidence 4577899999777888999999999997432 21 12232 2345699999999887777776654 57899875432
Q ss_pred cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--ecCc
Q psy9316 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--TKGE 208 (264)
Q Consensus 131 ~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~~~~ 208 (264)
+... .++.. ..-........+| .+|+++.|++++..+..+.-.|..|.|||..++...... ..+.
T Consensus 174 n~~r--------~~~~~----s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg 240 (445)
T KOG2139|consen 174 NANR--------NIRMM----STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG 240 (445)
T ss_pred cccc--------ccccc----cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCc
Confidence 2111 01100 0000111223455 689999999876545444557899999999998864433 3455
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 209 NINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 209 ~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
+.-+.|||||.+|.+++-|++.++|+..
T Consensus 241 ~slLkwSPdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred eeeEEEcCCCCEEEEecccceeeeehhc
Confidence 6679999999999999999999999644
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.9e-09 Score=99.31 Aligned_cols=213 Identities=17% Similarity=0.214 Sum_probs=140.9
Q ss_pred CeeEEEeecCceEEecccccccc---------ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcc----c
Q psy9316 23 SQFHLVCKIDDYVKHFNTHNDIK---------EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK----E 89 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~~~~~~---------~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~----~ 89 (264)
+.+.++|+.||++|.|+..+... +|..-.+.+.++...+.++.+|.|+.||.|.+..++....... .
T Consensus 1061 ~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ 1140 (1431)
T KOG1240|consen 1061 TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQV 1140 (1431)
T ss_pred CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeee
Confidence 36788999999999998765432 2333467899999999999999999999999999886211111 1
Q ss_pred EEEecc-cccEEeE-EEecCCC-CeEEEEeCCCcEEEEECCCCC---------------------cceEEEeecCCCcEE
Q psy9316 90 VVYRGH-TGSVDQL-CWHATNP-DLLSTASGDKTVRIWDARTQK---------------------SQIMLASGSFDKSVA 145 (264)
Q Consensus 90 ~~~~~h-~~~v~~i-~~~~~~~-~~l~s~s~dg~i~vwd~~~~~---------------------~~~~~~~~~~d~~i~ 145 (264)
.+.+.+ .+.+.++ ++..... ..++.+...+.+..||++... ....+++|+..|.+.
T Consensus 1141 ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~ 1220 (1431)
T KOG1240|consen 1141 RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLV 1220 (1431)
T ss_pred ecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEE
Confidence 111212 2334333 3433333 377778889999999987642 123688999999999
Q ss_pred EEEeccCCCccceEEEeccccceeeEEEcCCCC--CEEEE-Ee-CCCcEEEEeCCCCcceeEeecC-c------------
Q psy9316 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP--DLLST-AS-GDKTVRIWDARTQKSQIIATKG-E------------ 208 (264)
Q Consensus 146 i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~--~~i~s-~~-~dg~i~iwD~~t~~~~~~~~~~-~------------ 208 (264)
+||++-+-.+..- -..+..+|+.+..+|..+ ...++ ++ ..+.|.+|+++++..+...-.+ .
T Consensus 1221 lWDLRF~~~i~sw--~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~ 1298 (1431)
T KOG1240|consen 1221 LWDLRFRVPILSW--EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSND 1298 (1431)
T ss_pred EEEeecCceeecc--cCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhccccc
Confidence 9999854332211 123446788888877544 44444 44 5899999999988653322111 0
Q ss_pred --------eEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 209 --------NINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 209 --------~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.....+...+..+.+|+.|..|+.||...
T Consensus 1299 ~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1299 ARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred CCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 01223334556788999999999999764
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-09 Score=104.01 Aligned_cols=178 Identities=21% Similarity=0.259 Sum_probs=116.7
Q ss_pred ccccccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCC----CCcccEEEecccccEEeEEEecCCCCeEEEEe
Q psy9316 42 NDIKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKG----DLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS 116 (264)
Q Consensus 42 ~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~----~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s 116 (264)
..+..+..|.+.|..++.++ ++.++++||.||+|++|+..+-. ......++.--...+.++...+.+ +.++.++
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~t 1117 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAVST 1117 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEEEc
Confidence 45667788999999999887 45999999999999999976421 112223343345667777777644 6777789
Q ss_pred CCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCC-CEEEEEeCCCcEEEEeC
Q psy9316 117 GDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP-DLLSTASGDKTVRIWDA 195 (264)
Q Consensus 117 ~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~-~~i~s~~~dg~i~iwD~ 195 (264)
.||.|.+.+++.....-...+. +++-+....+. . |..-.+..... ..++.+..-+.|..||+
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~-----~ri~n~~~~g~---v---------v~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQ-----VRIPNLKKDGV---V---------VSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred CCCeEEEEEccccccccceeee-----eecccccCCCc---e---------EEeecccccccceeEEEEEeccceEEecc
Confidence 9999999988752111011000 01111111111 1 11111111112 26677788899999999
Q ss_pred CCCcc----eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 196 RTQKS----QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 196 ~t~~~----~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
++... +.....+.+.+++.+|-+.++++|+..|.+.+||+|=
T Consensus 1181 r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1181 RMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred hhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 98763 2233457789999999999999999999999999873
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-10 Score=99.22 Aligned_cols=190 Identities=18% Similarity=0.187 Sum_probs=138.0
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCC-CCeEEEEeCCCcEE
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN-PDLLSTASGDKTVR 122 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~~l~s~s~dg~i~ 122 (264)
.+.+..|.+-|..+-|+..|..|++||.|..|.+||..... ... ....+|...|....|.|.. ...+++++.||.++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~-~~l-~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS-PKL-SFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccC-ccc-ccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 34578999999999999999999999999999999976422 211 1234788888888888753 45778889999998
Q ss_pred EEECCCCC-----------------------cceEEEeecCCCcEEEEEeccCCCccceEEEecccc---ceeeEEEcCC
Q psy9316 123 IWDARTQK-----------------------SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG---SVDQLCWHAT 176 (264)
Q Consensus 123 vwd~~~~~-----------------------~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~---~i~~i~~~~~ 176 (264)
+=.+.... ....+.+++.|+.+.-+|++.+........-..+.. ..+.|+.+|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 75432211 012366778888888888876655444333333444 5678899998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcce------eE--------eecCceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q psy9316 177 NPDLLSTASGDKTVRIWDARTQKSQ------II--------ATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 177 ~~~~i~s~~~dg~i~iwD~~t~~~~------~~--------~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~ 235 (264)
+...++.++.|-.+++||.+.-... .. ..+..+.+++|+.++.-|.+.-+|-.|+++.-
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~ 365 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNK 365 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecc
Confidence 8889999999999999999864321 01 11224678999988887777777999999953
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-09 Score=88.94 Aligned_cols=176 Identities=22% Similarity=0.425 Sum_probs=114.5
Q ss_pred EeecCceEEecccccc-ccccc-cCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCcc-----------cEEEe
Q psy9316 28 VCKIDDYVKHFNTHND-IKEYQ-AHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNK-----------EVVYR 93 (264)
Q Consensus 28 ~~~~d~~~~~~~~~~~-~~~~~-~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~-----------~~~~~ 93 (264)
++..|..+++|+.... ...++ ..+..|.|++|-| .+.-|+.|+..| |.+|..+....... .....
T Consensus 115 va~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~p 193 (445)
T KOG2139|consen 115 VATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDP 193 (445)
T ss_pred hhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCC
Confidence 4667889999876532 22232 2345799999999 456777777655 89998765432221 11233
Q ss_pred cccccEEeEEEecCCCCeEEEEe-CCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEE
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTAS-GDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 172 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~ 172 (264)
+| ..|+.+.|.+++ ..+++++ .|..|.+||.+++....+. ..--+++.-+.
T Consensus 194 gh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~--------------------------~~glgg~slLk 245 (445)
T KOG2139|consen 194 GH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLI--------------------------PKGLGGFSLLK 245 (445)
T ss_pred CC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCccccc--------------------------ccCCCceeeEE
Confidence 45 679999999866 4555555 5888999999876543221 01124677899
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCC-CCcc-eeEeecCceEEEEEcCCCCEEEEe-eCCCeEEEE
Q psy9316 173 WHATNPDLLSTASGDKTVRIWDAR-TQKS-QIIATKGENINITWAPNGNTIAVG-NKEDLVTFI 233 (264)
Q Consensus 173 ~~~~~~~~i~s~~~dg~i~iwD~~-t~~~-~~~~~~~~~~~v~~sp~g~~la~g-s~d~~i~~~ 233 (264)
|+|++ ++|.++.-|+..++|+.. +... .-....+.+....|+|+|+.|+.+ +.+..++-.
T Consensus 246 wSPdg-d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 246 WSPDG-DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred EcCCC-CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 99965 566667889999999443 3222 122345578889999999977555 444444433
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-08 Score=80.41 Aligned_cols=158 Identities=20% Similarity=0.351 Sum_probs=111.2
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 132 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 132 (264)
.|+++-..|..+-|+.++-|+.+.-||++. +... ..+++|++-|.++.--... ..+++|+.||++|+||.++++..
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~-G~i~--r~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v 191 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLED-GRIQ--REYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHV 191 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecC-CEEE--EEEcCCcceeeeeeecccC-cceeecCCCccEEEEecccccee
Confidence 588999999887777777899999999874 4443 4689999999998763333 35779999999999999998765
Q ss_pred eEEEeecCCCcEEEEEeccCCCccceEEEecccc-ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-EeecCceE
Q psy9316 133 IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG-SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATKGENI 210 (264)
Q Consensus 133 ~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~-~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~~~~~ 210 (264)
.++.. ++. ....+.|-+ .|.+++- +.+.+++ +....+.+|.+++.+... ..-++++.
T Consensus 192 ~~ie~--yk~---------------~~~lRp~~g~wigala~---~edWlvC-GgGp~lslwhLrsse~t~vfpipa~v~ 250 (325)
T KOG0649|consen 192 SMIEP--YKN---------------PNLLRPDWGKWIGALAV---NEDWLVC-GGGPKLSLWHLRSSESTCVFPIPARVH 250 (325)
T ss_pred EEecc--ccC---------------hhhcCcccCceeEEEec---cCceEEe-cCCCceeEEeccCCCceEEEeccccee
Confidence 44321 111 011233333 4667764 3457764 567799999999988643 34467777
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 211 NITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 211 ~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
-+.|. .+.+++++..+.+.-|.+..
T Consensus 251 ~v~F~--~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 251 LVDFV--DDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred Eeeee--cceEEEeccccceeeeeecc
Confidence 77776 45666677677888887654
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-09 Score=96.79 Aligned_cols=180 Identities=24% Similarity=0.386 Sum_probs=128.4
Q ss_pred ccccCCCCEEEEEECCCCCeEEEEECC---CcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEE
Q psy9316 46 EYQAHGSKVHSVAWSCDGRRLASGSFD---KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~~g~~l~s~s~d---g~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~ 122 (264)
..-.|...|..+.|+.+|+||++...+ ..|-|.++....... -|+.-.+.|..+.|+|....+++ +....|+
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~---PF~kskG~vq~v~FHPs~p~lfV--aTq~~vR 590 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQS---PFRKSKGLVQRVKFHPSKPYLFV--ATQRSVR 590 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccC---chhhcCCceeEEEecCCCceEEE--EeccceE
Confidence 334677889999999999999997653 468888876533221 14344567999999997765554 3467899
Q ss_pred EEECCCCCc-------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEE
Q psy9316 123 IWDARTQKS-------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST 183 (264)
Q Consensus 123 vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s 183 (264)
+||+..+.. .-.++.|++|+.+--||++.++.- ...++-|...+..++|++. --+|++
T Consensus 591 iYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP--yk~lr~H~~avr~Va~H~r-yPLfas 667 (733)
T KOG0650|consen 591 IYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP--YKTLRLHEKAVRSVAFHKR-YPLFAS 667 (733)
T ss_pred EEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch--hHHhhhhhhhhhhhhhccc-cceeee
Confidence 999865421 113678899999999998765432 2245678889999999974 458999
Q ss_pred EeCCCcEEEEeCC------CCcc--eeEeecC-------ceEEEEEcCCCCEEEEeeCCCeEEEE
Q psy9316 184 ASGDKTVRIWDAR------TQKS--QIIATKG-------ENINITWAPNGNTIAVGNKEDLVTFI 233 (264)
Q Consensus 184 ~~~dg~i~iwD~~------t~~~--~~~~~~~-------~~~~v~~sp~g~~la~gs~d~~i~~~ 233 (264)
|+.||++.||=-. .... -+....+ .+..+.|+|..-+|.++++|++|++|
T Consensus 668 ~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 668 GSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 9999999988221 1111 1111111 35677899999999999999999998
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.5e-08 Score=88.29 Aligned_cols=188 Identities=16% Similarity=0.255 Sum_probs=113.7
Q ss_pred ccccccccCCCCEEEEEECCCCCeEEEEECC---CcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCC
Q psy9316 42 NDIKEYQAHGSKVHSVAWSCDGRRLASGSFD---KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD 118 (264)
Q Consensus 42 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d---g~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~d 118 (264)
...+.+..+...+...+|+|||++|+.++.+ ..|.+|++... .. ..+..+...+..+.|+|++..++++.+.+
T Consensus 180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g-~~---~~~~~~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG-QR---EKVASFPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-CE---EEeecCCCCccceEECCCCCEEEEEECCC
Confidence 3345555677778999999999999987754 37889987642 21 12334455566789999776566666655
Q ss_pred C--cEEEEECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCC
Q psy9316 119 K--TVRIWDARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 177 (264)
Q Consensus 119 g--~i~vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~ 177 (264)
+ .|++||+.+++.. .++.+...++...||.++..+.... .+..+...+....|+|++
T Consensus 256 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~--~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 256 GNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR--RLTFRGGYNASPSWSPDG 333 (417)
T ss_pred CCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecCCCCccCeEECCCC
Confidence 5 4888898764321 1122222233334444333222111 122233455677899865
Q ss_pred CCEEEEEeCCC---cEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCC---eEEEEEcc
Q psy9316 178 PDLLSTASGDK---TVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKED---LVTFIDVV 236 (264)
Q Consensus 178 ~~~i~s~~~dg---~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~---~i~~~d~~ 236 (264)
..++.++.++ .|.+||+.++..............+|+|+|++|+..+.++ .+++.+..
T Consensus 334 -~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 334 -DLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred -CEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 4555555554 7888999886544333333345578999999998887765 45666643
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=94.05 Aligned_cols=175 Identities=22% Similarity=0.259 Sum_probs=123.2
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCc---------------------------ccEEEec---------cc
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN---------------------------KEVVYRG---------HT 96 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~---------------------------~~~~~~~---------h~ 96 (264)
.-..+.++.+|+.|+.|+.-|.+..+|..+.. +. ...+|.. ..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~-L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~ 209 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK-LHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH 209 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccce-eeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc
Confidence 34678899999999999999999999865421 10 0011111 12
Q ss_pred ccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCCccc
Q psy9316 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGDLNK 157 (264)
Q Consensus 97 ~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~ 157 (264)
..|..+.|.| ...+|++++..|.++.-|+.+++.. ..+-+|...|++.+|..+..-.+.+
T Consensus 210 ~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 210 IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK 288 (545)
T ss_pred Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence 4456666766 3367888899999999999876521 1456788899999998766544443
Q ss_pred eEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc-eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q psy9316 158 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 158 ~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~-~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~ 235 (264)
+.+|.++|.+|++.+ ++.+++|.+.|..++|||+++... .....+.....+++|..| +++.+....+.+|.-
T Consensus 289 ---iLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 289 ---ILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred ---HHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeehh
Confidence 357999999999997 467899999999999999998763 222234455678888544 334445677899963
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-08 Score=80.81 Aligned_cols=120 Identities=22% Similarity=0.447 Sum_probs=79.9
Q ss_pred cccccc-CCCCEEEEEECCCCCeEEE--EECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeC---
Q psy9316 44 IKEYQA-HGSKVHSVAWSCDGRRLAS--GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG--- 117 (264)
Q Consensus 44 ~~~~~~-h~~~V~~l~~s~~g~~l~s--~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~--- 117 (264)
+..+.. ..++|.+++|+|+|+.++. |..+..|.+|++. ... +..-+...+..+.|+|.+ ++++.++.
T Consensus 51 ~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~--i~~~~~~~~n~i~wsP~G-~~l~~~g~~n~ 123 (194)
T PF08662_consen 51 VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKK--IFSFGTQPRNTISWSPDG-RFLVLAGFGNL 123 (194)
T ss_pred cceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc----ccE--eEeecCCCceEEEECCCC-CEEEEEEccCC
Confidence 344443 3457999999999998655 4467899999975 122 233345677889999976 56666653
Q ss_pred CCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEe------CCCcEE
Q psy9316 118 DKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS------GDKTVR 191 (264)
Q Consensus 118 dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~------~dg~i~ 191 (264)
.|.+.+||+++.+... ......+..+.|+|++. +++++. .|+.++
T Consensus 124 ~G~l~~wd~~~~~~i~----------------------------~~~~~~~t~~~WsPdGr-~~~ta~t~~r~~~dng~~ 174 (194)
T PF08662_consen 124 NGDLEFWDVRKKKKIS----------------------------TFEHSDATDVEWSPDGR-YLATATTSPRLRVDNGFK 174 (194)
T ss_pred CcEEEEEECCCCEEee----------------------------ccccCcEEEEEEcCCCC-EEEEEEeccceeccccEE
Confidence 4679999998433110 11123467899999764 555544 389999
Q ss_pred EEeCCCCc
Q psy9316 192 IWDARTQK 199 (264)
Q Consensus 192 iwD~~t~~ 199 (264)
||+.....
T Consensus 175 Iw~~~G~~ 182 (194)
T PF08662_consen 175 IWSFQGRL 182 (194)
T ss_pred EEEecCeE
Confidence 99987543
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=88.79 Aligned_cols=146 Identities=21% Similarity=0.325 Sum_probs=104.8
Q ss_pred CCeeEE-EeecCceEEeccccc------------cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccC-CCCc
Q psy9316 22 GSQFHL-VCKIDDYVKHFNTHN------------DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK-GDLN 87 (264)
Q Consensus 22 ~~~~~~-~~~~d~~~~~~~~~~------------~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~-~~~~ 87 (264)
++.+.+ .+..+|-+-.|+..+ .+..+..|..+|.++.|.+....=++|+.+..+.+|+++.. +.+.
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq 242 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ 242 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc
Confidence 344443 466677776675443 23456789999999999988888888999999999998754 2222
Q ss_pred ccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccc
Q psy9316 88 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167 (264)
Q Consensus 88 ~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~ 167 (264)
......-.+-.|..+..-| ++.+++++++|+.||+|.-++.... -.+.-|.+.
T Consensus 243 ~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pL--------------------------AVLkyHsag 295 (323)
T KOG0322|consen 243 IRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPL--------------------------AVLKYHSAG 295 (323)
T ss_pred ccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCch--------------------------hhhhhhhcc
Confidence 1111111223366667767 4479999999999999988764422 123558899
Q ss_pred eeeEEEcCCCCCEEEEEeCCCcEEEEeC
Q psy9316 168 VDQLCWHATNPDLLSTASGDKTVRIWDA 195 (264)
Q Consensus 168 i~~i~~~~~~~~~i~s~~~dg~i~iwD~ 195 (264)
|++++|+|+ ..++|+++.|+.|-+|++
T Consensus 296 vn~vAfspd-~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 296 VNAVAFSPD-CELMAAASKDARISLWKL 322 (323)
T ss_pred eeEEEeCCC-CchhhhccCCceEEeeec
Confidence 999999985 579999999999999986
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-08 Score=84.23 Aligned_cols=138 Identities=22% Similarity=0.268 Sum_probs=106.9
Q ss_pred EEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce
Q psy9316 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI 133 (264)
Q Consensus 54 V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 133 (264)
..++.|++-+..++++-.+|.+.+.+.. ...++....++.|........|+..+++++.+|+.|+.+..||++..+.-
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t-~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~- 201 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYET-EMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF- 201 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecc-eeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-
Confidence 4577899999999999999999855433 23444434578899999999998888899999999999999999843311
Q ss_pred EEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc-eeEe-ecCceEE
Q psy9316 134 MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIA-TKGENIN 211 (264)
Q Consensus 134 ~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~-~~~~-~~~~~~~ 211 (264)
+|. .-+.|+++|.+|.-+|..+.+|++|+.|-.|++||.++... .... ..+.+.+
T Consensus 202 ------------i~~-----------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWR 258 (339)
T KOG0280|consen 202 ------------IWH-----------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWR 258 (339)
T ss_pred ------------eee-----------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEE
Confidence 221 01458899999999998889999999999999999996543 2222 2467899
Q ss_pred EEEcC
Q psy9316 212 ITWAP 216 (264)
Q Consensus 212 v~~sp 216 (264)
+.++|
T Consensus 259 i~~~p 263 (339)
T KOG0280|consen 259 IKHHP 263 (339)
T ss_pred EEecc
Confidence 99888
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-08 Score=86.67 Aligned_cols=187 Identities=11% Similarity=0.116 Sum_probs=128.8
Q ss_pred CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCC-CcccEEEecccccEEeEEEecCCCCeEEEEeCC--CcEEEEECC
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD-LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD--KTVRIWDAR 127 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~d--g~i~vwd~~ 127 (264)
.+.|..+... ...|+++-.+|.+.+|....+-. ......+..+ ..+..+.-++..+.++++|+.. ..+++||++
T Consensus 105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred cccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 3445555442 34667778899999998763221 1111222223 3355555566677888889988 889999997
Q ss_pred CCCc------------------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCC
Q psy9316 128 TQKS------------------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 177 (264)
Q Consensus 128 ~~~~------------------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~ 177 (264)
..+. ...+++++..+.+++||.+....- ...+.--..+|.++...|.
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP--V~~fd~~E~~is~~~l~p~- 258 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP--VAQFDFLENPISSTGLTPS- 258 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc--eeEeccccCcceeeeecCC-
Confidence 6521 124677778888999987643322 2223223457888888874
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcceeE---eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCC
Q psy9316 178 PDLLSTASGDKTVRIWDARTQKSQII---ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRE 243 (264)
Q Consensus 178 ~~~i~s~~~dg~i~iwD~~t~~~~~~---~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~ 243 (264)
+.+|++|...|.+..||++.+..... ...+.+.++...|.+.++|.++-|+.++|+|+......++
T Consensus 259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 56888999999999999999875333 3356788899999999999999999999999876333333
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-09 Score=94.05 Aligned_cols=144 Identities=21% Similarity=0.320 Sum_probs=111.6
Q ss_pred CCCeEEEEeCCCcEEEEECCCCCcc------------------------------------------eEEEeecCCCcEE
Q psy9316 108 NPDLLSTASGDKTVRIWDARTQKSQ------------------------------------------IMLASGSFDKSVA 145 (264)
Q Consensus 108 ~~~~l~s~s~dg~i~vwd~~~~~~~------------------------------------------~~~~~~~~d~~i~ 145 (264)
...+++....||.+|+||..+++.. .+++.|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 3467888889999999998664321 2567788888998
Q ss_pred EEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--ecCceEEEEEcCCCCEEEE
Q psy9316 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--TKGENINITWAPNGNTIAV 223 (264)
Q Consensus 146 i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~~~~~~~v~~sp~g~~la~ 223 (264)
+|+... +.+.....-.+|.++|+++.++ ++...|.|++.|+.+..|+...+...... .+..+.++.++|||..+++
T Consensus 84 ~ys~~~-g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 84 LYSVAG-GEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEecC-CeEEEEEecCCCCCcceeeecc-cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 888753 3333334446789999999887 45678999999999999999988754443 3445678999999999998
Q ss_pred eeCCCeEEEEEcccCCCCCCCcccCcccceeeeeec
Q psy9316 224 GNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSLW 259 (264)
Q Consensus 224 gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~~ 259 (264)
|+ +.|.+||+++ .|.+.++.||...||+|=
T Consensus 162 as--~~ik~~~~~~----kevv~~ftgh~s~v~t~~ 191 (541)
T KOG4547|consen 162 AS--RQIKVLDIET----KEVVITFTGHGSPVRTLS 191 (541)
T ss_pred cc--ceEEEEEccC----ceEEEEecCCCcceEEEE
Confidence 87 7899999874 566789999999999873
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.6e-08 Score=88.07 Aligned_cols=187 Identities=17% Similarity=0.253 Sum_probs=107.8
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEEECC---CcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCC-
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFD---KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK- 119 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~d---g~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg- 119 (264)
.+.+..+...+....|+|||++|+..+.+ ..|.+|++... .... +....+.+....|+|++..++++.+.+|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g-~~~~---l~~~~g~~~~~~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG-RREQ---ITNFEGLNGAPAWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC-CEEE---ccCCCCCcCCeEECCCCCEEEEEEccCCC
Confidence 44455667788999999999999877654 25778887542 2211 2222334456789997766666666666
Q ss_pred -cEEEEECCCCCcce-------------------EEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCC
Q psy9316 120 -TVRIWDARTQKSQI-------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD 179 (264)
Q Consensus 120 -~i~vwd~~~~~~~~-------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~ 179 (264)
.|++||+++++... ++.+...++...||.++..+......++.+ .......|+|++..
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg~~ 344 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG--NYNARPRLSADGKT 344 (430)
T ss_pred ceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC--CCccceEECCCCCE
Confidence 57888987654211 112222233333443332211111112211 12234678887654
Q ss_pred EEEEEeCCC--cEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCC---CeEEEEEcc
Q psy9316 180 LLSTASGDK--TVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKE---DLVTFIDVV 236 (264)
Q Consensus 180 ~i~s~~~dg--~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d---~~i~~~d~~ 236 (264)
++.+...++ .|.+||+.+++..............|+|||+.++..+.+ ..++++++.
T Consensus 345 i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 345 LVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 444443344 577889988765433332233457899999999887654 357777774
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=93.88 Aligned_cols=233 Identities=18% Similarity=0.238 Sum_probs=155.3
Q ss_pred cceEeecCCCCCce---EeecCC-CeeEEEeecCceEEeccc-----cccccccccCCCCEEEEEECCCC-CeEEEEECC
Q psy9316 3 CPVIQFHTPKSPEY---KLLPSG-SQFHLVCKIDDYVKHFNT-----HNDIKEYQAHGSKVHSVAWSCDG-RRLASGSFD 72 (264)
Q Consensus 3 ~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~d~~~~~~~~-----~~~~~~~~~h~~~V~~l~~s~~g-~~l~s~s~d 72 (264)
-|++.|+.-+-.|- +|+|.. ..-+..++.||.++.-.. .+..+.+..|.+.|+-++.-|+. .-+.++|.|
T Consensus 175 ~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD 254 (559)
T KOG1334|consen 175 SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGED 254 (559)
T ss_pred CcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccc
Confidence 36677765444332 577843 333456888999887432 24567788999999999999954 678889999
Q ss_pred CcEEEEEeccCCCCcccEEEecccc---cEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-----------------
Q psy9316 73 KSVAIFALDKKGDLNKEVVYRGHTG---SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ----------------- 132 (264)
Q Consensus 73 g~i~v~~~~~~~~~~~~~~~~~h~~---~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~----------------- 132 (264)
+.+.=+|+.....-.....-+.+.. ....++.+|...+.+++++.|-.+++||.+.-...
T Consensus 255 ~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d 334 (559)
T KOG1334|consen 255 AVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVED 334 (559)
T ss_pred cceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccccc
Confidence 9999888765332222112223333 45777888888889999999999999998652211
Q ss_pred ----eE----------EEeecCCCcEEEEEeccC-CC----cc-----ceEEEecccc--ceeeEEEcCCCCCEEEEEeC
Q psy9316 133 ----IM----------LASGSFDKSVAIFALDKK-GD----LN-----KEVVYRGHTG--SVDQLCWHATNPDLLSTASG 186 (264)
Q Consensus 133 ----~~----------~~~~~~d~~i~i~~~~~~-~~----~~-----~~~~~~~h~~--~i~~i~~~~~~~~~i~s~~~ 186 (264)
+. +.+.-.|-.|.++.-+.+ +. .. ....+++|.. .|..+-|--...++++||+.
T Consensus 335 ~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD 414 (559)
T KOG1334|consen 335 DPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD 414 (559)
T ss_pred CcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc
Confidence 00 122223445666632221 10 00 1123677754 46666554335789999999
Q ss_pred CCcEEEEeCCCCccee--EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q psy9316 187 DKTVRIWDARTQKSQI--IATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 187 dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~ 235 (264)
=|.|.|||-.+.+... ......++++.=+|--..||+.+-|.-|+||-.
T Consensus 415 CGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 415 CGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred cceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 9999999999988532 233345677888899999999999999999985
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-08 Score=88.27 Aligned_cols=185 Identities=18% Similarity=0.289 Sum_probs=110.9
Q ss_pred cCCCCEEEEEECCCCCeEEE-EECCCcEEEEEeccCCCCcccEEEeccc-ccEEeEEEecCCCCeEEEEeCCCcEEEE--
Q psy9316 49 AHGSKVHSVAWSCDGRRLAS-GSFDKSVAIFALDKKGDLNKEVVYRGHT-GSVDQLCWHATNPDLLSTASGDKTVRIW-- 124 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s-~s~dg~i~v~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~l~s~s~dg~i~vw-- 124 (264)
.|...-+.+..+|||+|+++ |-+--.|++||+..- . ..++-|. +.+..+-...++-..++--..|.+|-+-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL-S----LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL-S----LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccc-e----eeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 46667789999999998765 557779999998641 1 1233232 2233222222221222223345444331
Q ss_pred --------------ECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcE
Q psy9316 125 --------------DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 190 (264)
Q Consensus 125 --------------d~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i 190 (264)
|+......+-+..++....+.-+.+..+.-+.+ +....+.++++..++.+ .+|++|+.+|.|
T Consensus 124 ~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P---~~~~~~~lN~v~in~~h-gLla~Gt~~g~V 199 (703)
T KOG2321|consen 124 YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNP---FETDSGELNVVSINEEH-GLLACGTEDGVV 199 (703)
T ss_pred cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccc---cccccccceeeeecCcc-ceEEecccCceE
Confidence 111111112233333333444444433222222 22334689999998865 588999999999
Q ss_pred EEEeCCCCcc-eeEe-------ecC-----ceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 191 RIWDARTQKS-QIIA-------TKG-----ENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 191 ~iwD~~t~~~-~~~~-------~~~-----~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
.+||.+.+.. .... +++ .+.+++|+.+|-.+++|+.+|.++|||+++..+..
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~ 264 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL 264 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee
Confidence 9999998763 1111 112 26789999999999999999999999999866543
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.9e-08 Score=88.54 Aligned_cols=210 Identities=16% Similarity=0.227 Sum_probs=142.3
Q ss_pred EEeecCceEEeccc--cccccccccCCCCEEEEEECCCCC---eEEEEECCCcEEEEEeccCCCCccc---------EEE
Q psy9316 27 LVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGR---RLASGSFDKSVAIFALDKKGDLNKE---------VVY 92 (264)
Q Consensus 27 ~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~---~l~s~s~dg~i~v~~~~~~~~~~~~---------~~~ 92 (264)
+++....++++|.. +.+++.+.+|..++..+.+.|... ++.+.+.||.|++||..... ..+. ..+
T Consensus 31 l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~-Llkt~~~~~~v~~~~~ 109 (792)
T KOG1963|consen 31 LFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE-LLKTFDNNLPVHALVY 109 (792)
T ss_pred EEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE-EEEEEecCCceeEEEe
Confidence 45677888899864 677889999999999999988543 67789999999999865321 1000 000
Q ss_pred ecc----------------------------------------ccc-------EEeEEEecCCCCeEEEEeCCCcEEEEE
Q psy9316 93 RGH----------------------------------------TGS-------VDQLCWHATNPDLLSTASGDKTVRIWD 125 (264)
Q Consensus 93 ~~h----------------------------------------~~~-------v~~i~~~~~~~~~l~s~s~dg~i~vwd 125 (264)
..+ ... -..+...+.+ .+.....+..+.+|+
T Consensus 110 ~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g--e~~~i~~~~~~~~~~ 187 (792)
T KOG1963|consen 110 KPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG--EFKGIVHMCKIHIYF 187 (792)
T ss_pred chhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc--eEEEEEEeeeEEEEE
Confidence 000 000 0111122111 112223344556677
Q ss_pred CCCCC-----------------------cceEEEeecCCCcEEEEEecc-CCCccceEEEeccccceeeEEEcCCCCCEE
Q psy9316 126 ARTQK-----------------------SQIMLASGSFDKSVAIFALDK-KGDLNKEVVYRGHTGSVDQLCWHATNPDLL 181 (264)
Q Consensus 126 ~~~~~-----------------------~~~~~~~~~~d~~i~i~~~~~-~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i 181 (264)
..+.. +...+++|..||.|.+|.-.. .+.......++=|...|+++.|+++ +.++
T Consensus 188 v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~-G~~L 266 (792)
T KOG1963|consen 188 VPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD-GAYL 266 (792)
T ss_pred ecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC-CceE
Confidence 65521 123578899999999996432 3333344566778899999999985 5688
Q ss_pred EEEeCCCcEEEEeCCCCcceeEe-ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 182 STASGDKTVRIWDARTQKSQIIA-TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 182 ~s~~~dg~i~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
+||+..|.+-+|-+++++.+... ..+.+..+.+|||+++.++...|+.|.+....++..
T Consensus 267 lSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 267 LSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred eecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence 89999999999999998854332 345678899999999999999999999998765433
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-07 Score=86.14 Aligned_cols=185 Identities=14% Similarity=0.165 Sum_probs=104.7
Q ss_pred ccccCCCCEEEEEECCCCCeEEEEEC-CC--cEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCc--
Q psy9316 46 EYQAHGSKVHSVAWSCDGRRLASGSF-DK--SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT-- 120 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~~g~~l~s~s~-dg--~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~-- 120 (264)
.+..+...+....|+|||++|+..+. ++ .|.++++.. +... .+....+......|+|++..++++.+.+|.
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t-g~~~---~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT-QVRE---KVTSFPGINGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCC-CCeE---EecCCCCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence 34445667888999999999987664 33 466666643 2211 121122333467899987666667777776
Q ss_pred EEEEECCCCCcce-------------------EEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEE
Q psy9316 121 VRIWDARTQKSQI-------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLL 181 (264)
Q Consensus 121 i~vwd~~~~~~~~-------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i 181 (264)
|+++|+++++... ++.+...++...+|.++..+......++.++ ......|+|++..++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QNLGGSITPDGRSMI 365 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CCcCeeECCCCCEEE
Confidence 6777887643211 1222333444555554433221122222221 223468888765555
Q ss_pred EEEeCCCc--EEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCC---eEEEEEcc
Q psy9316 182 STASGDKT--VRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKED---LVTFIDVV 236 (264)
Q Consensus 182 ~s~~~dg~--i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~---~i~~~d~~ 236 (264)
++...++. |.++|+.++..............+|+|||+.|+..+.++ .++++++.
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 55554554 445688877643332222233568999999987766543 36777763
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-07 Score=84.45 Aligned_cols=199 Identities=13% Similarity=0.106 Sum_probs=104.4
Q ss_pred EeecCCCeeEE--EeecCce--EEecccc-ccccccccCCCCEEEEEECCCCCeEEEEEC-CC--cE--EEEEeccCCCC
Q psy9316 17 KLLPSGSQFHL--VCKIDDY--VKHFNTH-NDIKEYQAHGSKVHSVAWSCDGRRLASGSF-DK--SV--AIFALDKKGDL 86 (264)
Q Consensus 17 ~~~~~~~~~~~--~~~~d~~--~~~~~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~-dg--~i--~v~~~~~~~~~ 86 (264)
.+.|.|..+.+ +...++. |...+.. ...+.+....+.....+|+|||++|+..+. +| .+ ..|++......
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g 270 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG 270 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC
Confidence 57777766433 3333332 3333221 111222223444556899999999887653 23 23 33554421111
Q ss_pred cccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEecccc
Q psy9316 87 NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166 (264)
Q Consensus 87 ~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~ 166 (264)
....+...........+|+|++..++++...+|...+|.+..... .+.. ..+..+..
T Consensus 271 ~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~---------g~~~--------------~~lt~~~~ 327 (428)
T PRK01029 271 KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE---------GQSP--------------RLLTKKYR 327 (428)
T ss_pred cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc---------ccce--------------EEeccCCC
Confidence 111122222234456789997755555554566555553321000 0000 01111223
Q ss_pred ceeeEEEcCCCCCEEEEEeCC--CcEEEEeCCCCcceeEee-cCceEEEEEcCCCCEEEEeeC---CCeEEEEEcccC
Q psy9316 167 SVDQLCWHATNPDLLSTASGD--KTVRIWDARTQKSQIIAT-KGENINITWAPNGNTIAVGNK---EDLVTFIDVVKS 238 (264)
Q Consensus 167 ~i~~i~~~~~~~~~i~s~~~d--g~i~iwD~~t~~~~~~~~-~~~~~~v~~sp~g~~la~gs~---d~~i~~~d~~~~ 238 (264)
.+....|+|++..++.+...+ ..|.+||+.+++...... ........|+|||++|+..+. ...++++|+..+
T Consensus 328 ~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 328 NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 455678999765444443333 468999999887543332 234567899999998876543 346888887643
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.4e-10 Score=91.53 Aligned_cols=203 Identities=17% Similarity=0.273 Sum_probs=119.5
Q ss_pred CCCCceEeecCCCeeEEEeecCceEEeccccccccccccCCCCEEEEEECCCCCeEEE-EECCCcEEEEEeccCCCCccc
Q psy9316 11 PKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLAS-GSFDKSVAIFALDKKGDLNKE 89 (264)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s-~s~dg~i~v~~~~~~~~~~~~ 89 (264)
.+||+++++|+.+..+++ ||.-++-...+.| .--+.|.-+.|..|..+++. +..|+.|.+|++..+.-.
T Consensus 15 ~fSp~g~yiAs~~~yrlv------iRd~~tlq~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~--- 84 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRYRLV------IRDSETLQLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY--- 84 (447)
T ss_pred eECCCCCeeeeeeeeEEE------EeccchhhHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE---
Confidence 357888888887766553 3321111111111 11356788999998887776 567889999998764321
Q ss_pred EEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceE--------EEeecCCCc-EEEEEeccCCCc-----
Q psy9316 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIM--------LASGSFDKS-VAIFALDKKGDL----- 155 (264)
Q Consensus 90 ~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--------~~~~~~d~~-i~i~~~~~~~~~----- 155 (264)
..++.-.+.+..++|+|++.+++.+..-|-.|.+|.+.+.+...+ .++=..||. .+|...+...+.
T Consensus 85 ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 85 CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 223444567889999998878888888899999999987653211 111112222 112111100000
Q ss_pred ----cceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee-c-CceEEEEEcCCCCEEEEeeCCCe
Q psy9316 156 ----NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT-K-GENINITWAPNGNTIAVGNKEDL 229 (264)
Q Consensus 156 ----~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~-~-~~~~~v~~sp~g~~la~gs~d~~ 229 (264)
.....+.-.+.....|-|+|++ ..+-+||---.. ..... . -.+..++|+|.++.|++|+.|++
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg----------~~laVwd~~Ley-kv~aYe~~lG~k~v~wsP~~qflavGsyD~~ 233 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDG----------NWLAVWDNVLEY-KVYAYERGLGLKFVEWSPCNQFLAVGSYDQM 233 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCC----------cEEEEecchhhh-eeeeeeeccceeEEEeccccceEEeeccchh
Confidence 0001122223345668898853 244567543222 11222 2 23567899999999999999999
Q ss_pred EEEEE
Q psy9316 230 VTFID 234 (264)
Q Consensus 230 i~~~d 234 (264)
+++.+
T Consensus 234 lrvln 238 (447)
T KOG4497|consen 234 LRVLN 238 (447)
T ss_pred hhhhc
Confidence 99876
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-08 Score=94.07 Aligned_cols=148 Identities=18% Similarity=0.282 Sum_probs=118.5
Q ss_pred EECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEe
Q psy9316 58 AWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLAS 137 (264)
Q Consensus 58 ~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 137 (264)
.++++.-++++|+.-+.|.+|...... ....+.+|.+.+..+.|+- +++++++.|.|..+++|++++.+...
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn---~p~~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~---- 211 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDN---KPIRLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLG---- 211 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccC---CcceecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccC----
Confidence 356777899999999999999876322 2224779999999999986 55899999999999999999866331
Q ss_pred ecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE-ee-cCceEEEEEc
Q psy9316 138 GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII-AT-KGENINITWA 215 (264)
Q Consensus 138 ~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~-~~-~~~~~~v~~s 215 (264)
.+..+|++++..+++.|+ .|+|++.|-+.++|+....+.... .+ ...+.+++..
T Consensus 212 ---------------------~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~ 267 (967)
T KOG0974|consen 212 ---------------------CTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVP 267 (967)
T ss_pred ---------------------cccccccceeEEEEeccc---eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEc
Confidence 133579999999999875 889999999999997765543322 12 2457889999
Q ss_pred CCCCEEEEeeCCCeEEEEEccc
Q psy9316 216 PNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 216 p~g~~la~gs~d~~i~~~d~~~ 237 (264)
++.-.+.++..|+.+++||...
T Consensus 268 ~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 268 IGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred CCceEEEeeccCcchhhhhhhc
Confidence 9999999999999999999764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.1e-08 Score=89.14 Aligned_cols=157 Identities=15% Similarity=0.258 Sum_probs=98.8
Q ss_pred CCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCC---CcEEEEECCCCCcc----------------
Q psy9316 72 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD---KTVRIWDARTQKSQ---------------- 132 (264)
Q Consensus 72 dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~---------------- 132 (264)
+..|.+||.+. ... ..+..|...+....|+|++. .++.++.+ ..|++||+++++..
T Consensus 183 ~~~i~i~d~dg--~~~--~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDG--FNQ--FIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCC--CCc--eEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC
Confidence 46888888653 211 23456777899999999764 45555433 46999999765321
Q ss_pred --eEEE-eecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCC--cceeEeecC
Q psy9316 133 --IMLA-SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ--KSQIIATKG 207 (264)
Q Consensus 133 --~~~~-~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~--~~~~~~~~~ 207 (264)
..++ +.+.++.+.||.++..+... ..+..+...+....|+|++..++++...+|...||++... .........
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~ 335 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTP--SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG 335 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCe--EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC
Confidence 1223 33457777777665433221 2233455567789999976555556566788899876543 222222122
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 208 ENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 208 ~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
.+.+|+|+|++|++++.++.+ .||+.++
T Consensus 336 --~~~~~SpDG~~ia~~~~~~i~-~~Dl~~g 363 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDNVV-KQDLTSG 363 (429)
T ss_pred --CCccCCCCCCEEEEEcCCCEE-EEECCCC
Confidence 457899999999998877654 5898654
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-07 Score=79.63 Aligned_cols=177 Identities=14% Similarity=0.174 Sum_probs=119.3
Q ss_pred CceEEecccc--cccccc---ccCCCCEEEEEECCCCCeEEEEE--CCCcEEEEEeccCCCCcccEEEecccccEEeEEE
Q psy9316 32 DDYVKHFNTH--NDIKEY---QAHGSKVHSVAWSCDGRRLASGS--FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 104 (264)
Q Consensus 32 d~~~~~~~~~--~~~~~~---~~h~~~V~~l~~s~~g~~l~s~s--~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~ 104 (264)
...|.+|+.. +.++++ ..|...+.++++++.+.+|+.-+ ..|.|.+||+.. ......+.+|.+.+.+++|
T Consensus 105 ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n---l~~v~~I~aH~~~lAalaf 181 (391)
T KOG2110|consen 105 EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN---LQPVNTINAHKGPLAALAF 181 (391)
T ss_pred cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc---ceeeeEEEecCCceeEEEE
Confidence 3335666543 333433 35666788888888888998743 468999999864 3344557899999999999
Q ss_pred ecCCCCeEEEEeCCCc-EEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEE
Q psy9316 105 HATNPDLLSTASGDKT-VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST 183 (264)
Q Consensus 105 ~~~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s 183 (264)
++++ .+++++|..|+ |||+.+.+++....+.-|. ....|.+++|+|+ ..+|++
T Consensus 182 s~~G-~llATASeKGTVIRVf~v~~G~kl~eFRRG~------------------------~~~~IySL~Fs~d-s~~L~~ 235 (391)
T KOG2110|consen 182 SPDG-TLLATASEKGTVIRVFSVPEGQKLYEFRRGT------------------------YPVSIYSLSFSPD-SQFLAA 235 (391)
T ss_pred CCCC-CEEEEeccCceEEEEEEcCCccEeeeeeCCc------------------------eeeEEEEEEECCC-CCeEEE
Confidence 9855 89999999998 5899987665332221110 1236888999985 457788
Q ss_pred EeCCCcEEEEeCCCCcceeE------------------e----------e----------cCce--EEEEEc--CCCCEE
Q psy9316 184 ASGDKTVRIWDARTQKSQII------------------A----------T----------KGEN--INITWA--PNGNTI 221 (264)
Q Consensus 184 ~~~dg~i~iwD~~t~~~~~~------------------~----------~----------~~~~--~~v~~s--p~g~~l 221 (264)
.+..++|.||-++....... . . +... ..+.+. ++...+
T Consensus 236 sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v 315 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRV 315 (391)
T ss_pred ecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEE
Confidence 88899999997753210000 0 0 0000 123444 477899
Q ss_pred EEeeCCCeEEEEEccc
Q psy9316 222 AVGNKEDLVTFIDVVK 237 (264)
Q Consensus 222 a~gs~d~~i~~~d~~~ 237 (264)
.+++.||.++.|.+.-
T Consensus 316 ~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 316 LVASYDGHLYSYRLPP 331 (391)
T ss_pred EEEEcCCeEEEEEcCC
Confidence 9999999999998753
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=86.75 Aligned_cols=174 Identities=22% Similarity=0.233 Sum_probs=113.6
Q ss_pred EeecCCCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG 94 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~ 94 (264)
.+.+.|+. ..+++.||.+|+|+-+ ..+.....|++.|.+|.|+|||+.|++-+.| ..+||+.+...... ......
T Consensus 151 af~~~gs~-latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a-~~t~~~ 227 (398)
T KOG0771|consen 151 AFNGDGSK-LATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA-RKTPFS 227 (398)
T ss_pred EEcCCCCE-eeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh-hcCCcc
Confidence 45566665 3578899999998732 3445667899999999999999999999999 99999987642111 111112
Q ss_pred ccccEEeEEEecCC--CC--eEEEEeCCCcEEEEECCCCC------------------------cceEEEeecCCCcEEE
Q psy9316 95 HTGSVDQLCWHATN--PD--LLSTASGDKTVRIWDARTQK------------------------SQIMLASGSFDKSVAI 146 (264)
Q Consensus 95 h~~~v~~i~~~~~~--~~--~l~s~s~dg~i~vwd~~~~~------------------------~~~~~~~~~~d~~i~i 146 (264)
.......+.|..++ .. ++++-..-+.|+.||+..-. ...+++.|+.||.+.|
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai 307 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAI 307 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence 23334455565432 12 22333345666666543211 1236788999999999
Q ss_pred EEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCC
Q psy9316 147 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 196 (264)
Q Consensus 147 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~ 196 (264)
++...-.. .....+.|..-|+.+.|+|+ ...+++.+.|....|.-+.
T Consensus 308 ~~~~~lq~--~~~vk~aH~~~VT~ltF~Pd-sr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 308 YDAKSLQR--LQYVKEAHLGFVTGLTFSPD-SRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEeceeee--eEeehhhheeeeeeEEEcCC-cCcccccccCCceeEEEEe
Confidence 98532111 11234678889999999995 4566778888888887554
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-08 Score=83.22 Aligned_cols=185 Identities=17% Similarity=0.274 Sum_probs=117.0
Q ss_pred CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCc--ccEEEecc------------cccEEeEEEecCCC-CeEEEE
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN--KEVVYRGH------------TGSVDQLCWHATNP-DLLSTA 115 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~--~~~~~~~h------------~~~v~~i~~~~~~~-~~l~s~ 115 (264)
.+.|.++.|+..|.+|++|..+|.|.+|.-+.....+ -...+..| ...|..+.|.++.+ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999754322111 00112233 34578889986543 456667
Q ss_pred eCCCcEEEEECCCCCcce-------------------------------------------E-----------EEeecCC
Q psy9316 116 SGDKTVRIWDARTQKSQI-------------------------------------------M-----------LASGSFD 141 (264)
Q Consensus 116 s~dg~i~vwd~~~~~~~~-------------------------------------------~-----------~~~~~~d 141 (264)
+.|++|++|-+....... . ......|
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd 184 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD 184 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence 889999999875321000 0 0111233
Q ss_pred CcEEEEEeccCCCccceEEEeccc-----cceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc-----cee-Eeec----
Q psy9316 142 KSVAIFALDKKGDLNKEVVYRGHT-----GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-----SQI-IATK---- 206 (264)
Q Consensus 142 ~~i~i~~~~~~~~~~~~~~~~~h~-----~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~-----~~~-~~~~---- 206 (264)
-.|.+|.+...+..-.++..+.+. .=|++.-|+|..-.+++-.++.|+|++-|++... ..+ ....
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~ 264 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS 264 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence 345667655433222222222222 2366778899877788888999999999999432 111 1111
Q ss_pred --------CceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 207 --------GENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 207 --------~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
..+..+.|+++|+|+++=. -.+|++||++
T Consensus 265 rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~n 301 (433)
T KOG1354|consen 265 RSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLN 301 (433)
T ss_pred hhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEecc
Confidence 1234689999999998755 5789999985
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-07 Score=78.09 Aligned_cols=216 Identities=17% Similarity=0.267 Sum_probs=150.0
Q ss_pred EEeecCceEEeccccccccc----cccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCC-CcccEEEecccccEEe
Q psy9316 27 LVCKIDDYVKHFNTHNDIKE----YQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD-LNKEVVYRGHTGSVDQ 101 (264)
Q Consensus 27 ~~~~~d~~~~~~~~~~~~~~----~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~-~~~~~~~~~h~~~v~~ 101 (264)
+..+.|..+|+|......+. +.....++.++.+.++..+|+.|-.+|++.-|.+...-+ +.....+..|...|..
T Consensus 40 ~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~ 119 (404)
T KOG1409|consen 40 ISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSA 119 (404)
T ss_pred EEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceee
Confidence 56677888888865443322 233457899999999999999999999999887654221 1112335679999998
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCCCCc----------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccc
Q psy9316 102 LCWHATNPDLLSTASGDKTVRIWDARTQKS----------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165 (264)
Q Consensus 102 i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~ 165 (264)
+-|+. ...++++.+.|+.+.---.+++.. ......|...+.+.+..+... ......++.+|.
T Consensus 120 ~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~-~~~~i~~~~~h~ 197 (404)
T KOG1409|consen 120 IVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQN-GCQLITTFNGHT 197 (404)
T ss_pred EEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeec-CCceEEEEcCcc
Confidence 88875 446788888887665433333211 112344556666766655432 244566789999
Q ss_pred cceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee---EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 166 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI---IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 166 ~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~---~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
..+.+++|.|. ..++.+|.+|..+-+||+....... +.+...+..+...+--+.+.++..|+.|-+||.. ..+
T Consensus 198 ~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn---~~r 273 (404)
T KOG1409|consen 198 GEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN---VKR 273 (404)
T ss_pred cceEEEEEcCC-CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc---cee
Confidence 99999999985 4688899999999999998766433 3344455666677777888889999999999954 455
Q ss_pred CCcccC
Q psy9316 243 ERTLTS 248 (264)
Q Consensus 243 ~~~~~~ 248 (264)
++.+.+
T Consensus 274 ~etpew 279 (404)
T KOG1409|consen 274 VETPEW 279 (404)
T ss_pred ecCccc
Confidence 555554
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.3e-09 Score=94.67 Aligned_cols=201 Identities=22% Similarity=0.310 Sum_probs=136.6
Q ss_pred CEEEEEECCCC--C-eEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC
Q psy9316 53 KVHSVAWSCDG--R-RLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 129 (264)
Q Consensus 53 ~V~~l~~s~~g--~-~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~ 129 (264)
.|-..+|+|.. . ++++- ....-.+|++..+..-..++.+.+|...|+++.|+|+.+..+++++.|-.+..||+++.
T Consensus 69 ~vad~qws~h~a~~~wiVst-s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVST-SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred hhcceecccCCCCceeEEec-CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence 47788898754 3 44444 44556689887655444456677999999999999999999999999999999999875
Q ss_pred Ccce--------------------EEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCc
Q psy9316 130 KSQI--------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 189 (264)
Q Consensus 130 ~~~~--------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~ 189 (264)
.... .+.+.+....|.+||++.++.. ....++|...|+.+.|+..-...+.+.+.||+
T Consensus 148 ~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~p--l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t 225 (1081)
T KOG0309|consen 148 HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTP--LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT 225 (1081)
T ss_pred CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcc--eEEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence 4211 2344556778999999876542 23567788999999988655556778899999
Q ss_pred EEEEeCCCCcc---eeEeecCceEEEEEcCCCC--EEEEeeCCCeEEEEEcccCCC------CCCCcccCcccceeee
Q psy9316 190 VRIWDARTQKS---QIIATKGENINITWAPNGN--TIAVGNKEDLVTFIDVVKSLP------PRERTLTSRGHLMETR 256 (264)
Q Consensus 190 i~iwD~~t~~~---~~~~~~~~~~~v~~sp~g~--~la~gs~d~~i~~~d~~~~~~------~~~~~~~~~~h~~~~~ 256 (264)
|++||.+.... ..+.....+..-.+-|-|+ ++.---.+.++.+++.++..- .-+-+-++.||.-.|.
T Consensus 226 vkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~ 303 (1081)
T KOG0309|consen 226 VKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL 303 (1081)
T ss_pred eeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHH
Confidence 99999976542 2223344566777778655 332233344666666554211 1122336778876553
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-08 Score=98.72 Aligned_cols=175 Identities=16% Similarity=0.222 Sum_probs=123.8
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe-cccccEEeEEEecCCCCeEEEEeCCCcEEEEECC
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR-GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 127 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~ 127 (264)
.|-..|.++.-+|...+-++|+.||.+++|.-..... ...++ .-++.|+.+.|+.++ +.+..+..||.+.+|.+.
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~---v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ---VVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCe---EEEeeccCcchhhhhhhcccC-CceeeeccCCceeecccC
Confidence 3445677888888888899999999999998654332 22232 223778888888765 566677889999999986
Q ss_pred CCCc-----c-------eE----EEe---ecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCC
Q psy9316 128 TQKS-----Q-------IM----LAS---GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 188 (264)
Q Consensus 128 ~~~~-----~-------~~----~~~---~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg 188 (264)
.... . .. +++ .+.++++.+||-......... -.+|.++++++.+.|. ..+|+||+.+|
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v--~~~H~~gaT~l~~~P~-~qllisggr~G 2358 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLV--HTCHDGGATVLAYAPK-HQLLISGGRKG 2358 (2439)
T ss_pred CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCccccee--eeecCCCceEEEEcCc-ceEEEecCCcC
Confidence 4211 0 01 111 235678899986544333322 2789999999999995 46889999999
Q ss_pred cEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 189 TVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 189 ~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
.|++||++..+.... .+. +. -..++.+|+..|.++||++...
T Consensus 2359 ~v~l~D~rqrql~h~-~~~------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHT-FQA------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cEEEeehHHHHHHHH-hhh------hh-hhheeeccCcccceEEEEcccc
Confidence 999999997653111 011 33 5679999999999999999863
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=59.34 Aligned_cols=38 Identities=37% Similarity=0.714 Sum_probs=35.5
Q ss_pred ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEE
Q psy9316 42 NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFA 79 (264)
Q Consensus 42 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~ 79 (264)
+.+++|.+|.+.|.+++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45678899999999999999999999999999999996
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.8e-08 Score=90.39 Aligned_cols=119 Identities=26% Similarity=0.443 Sum_probs=92.2
Q ss_pred ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEE
Q psy9316 46 EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd 125 (264)
.+.+|.+.|.++.|+-||+++++.|+|.++++|+++...... ..-=+|++.|..++++|. .+++++.|.+.++|+
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN---RIITVGEDCTCRVWG 244 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc---eeEEeccceEEEEEe
Confidence 578999999999999999999999999999999998644333 122379999999999873 789999999999997
Q ss_pred CCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEecccc-ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q psy9316 126 ARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG-SVDQLCWHATNPDLLSTASGDKTVRIWDART 197 (264)
Q Consensus 126 ~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~-~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t 197 (264)
.+..+.. .+.+|.. .|..+...+ +....+|++.||.+++||..+
T Consensus 245 ~~~~~l~---------------------------~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 245 VNGTQLE---------------------------VYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cccceeh---------------------------hhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 6532211 1234443 567777654 446778888999999998864
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.3e-08 Score=81.17 Aligned_cols=107 Identities=21% Similarity=0.339 Sum_probs=78.9
Q ss_pred cCCCeeEEEeecCce-------EEecc-ccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEE
Q psy9316 20 PSGSQFHLVCKIDDY-------VKHFN-THNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91 (264)
Q Consensus 20 ~~~~~~~~~~~~d~~-------~~~~~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~ 91 (264)
+++.++++.+..+|. .+.+. ....+.++.+|.+.+.++.|.+....|++|..|..+.+||+.. .......
T Consensus 158 ~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg--~~g~~~e 235 (404)
T KOG1409|consen 158 ASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGG--RKGTAYE 235 (404)
T ss_pred CCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccC--Ccceeee
Confidence 345555555555443 22222 2345778999999999999999999999999999999999853 2223344
Q ss_pred EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC
Q psy9316 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 129 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~ 129 (264)
..+|...|..++..+. .+.+.+++.||.|-+||++..
T Consensus 236 l~gh~~kV~~l~~~~~-t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 236 LQGHNDKVQALSYAQH-TRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred eccchhhhhhhhhhhh-heeeeeccCCCeEEEEeccce
Confidence 6689998888876543 367789999999999998763
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-07 Score=79.17 Aligned_cols=175 Identities=14% Similarity=0.258 Sum_probs=113.5
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecc-----cccEEeEEEecCCCCeEEEEeCCCcEEE
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH-----TGSVDQLCWHATNPDLLSTASGDKTVRI 123 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h-----~~~v~~i~~~~~~~~~l~s~s~dg~i~v 123 (264)
.|.--|+++.++.|++.++++ .|-.|.+|+++.....-...-.+.+ +..|++..|+|..-+.++-+|..|+|++
T Consensus 162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 566669999999999999886 6789999988753322111112333 3458888899988888988999999999
Q ss_pred EECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCC--Ccce
Q psy9316 124 WDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART--QKSQ 201 (264)
Q Consensus 124 wd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t--~~~~ 201 (264)
-|++.... -|..-+++....+.... .-|..--+.|..+.|+.. +.+|++- .=-+|++||+.- +...
T Consensus 241 cDmR~~aL--------Cd~hsKlfEepedp~~r--sffseiIsSISDvKFs~s-GryilsR-Dyltvk~wD~nme~~pv~ 308 (433)
T KOG1354|consen 241 CDMRQSAL--------CDAHSKLFEEPEDPSSR--SFFSEIISSISDVKFSHS-GRYILSR-DYLTVKLWDLNMEAKPVE 308 (433)
T ss_pred eechhhhh--------hcchhhhhccccCCcch--hhHHHHhhhhhceEEccC-CcEEEEe-ccceeEEEeccccCCcce
Confidence 99985321 11111222211111000 012223457888999864 4677653 347999999843 2222
Q ss_pred eE-eec------------Cce---EEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 202 II-ATK------------GEN---INITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 202 ~~-~~~------------~~~---~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.. .+. +.+ ..++||-++.++++|+-.++.+++++.
T Consensus 309 t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 309 TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 11 111 111 458999999999999999999999954
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.4e-06 Score=71.67 Aligned_cols=187 Identities=20% Similarity=0.344 Sum_probs=118.8
Q ss_pred CCCCEEEEEECCCCCeEEEEEC-CCcEEEEEeccCCCCcccE-EEe----------cccccEEeEEEecCCCCeEEEEeC
Q psy9316 50 HGSKVHSVAWSCDGRRLASGSF-DKSVAIFALDKKGDLNKEV-VYR----------GHTGSVDQLCWHATNPDLLSTASG 117 (264)
Q Consensus 50 h~~~V~~l~~s~~g~~l~s~s~-dg~i~v~~~~~~~~~~~~~-~~~----------~h~~~v~~i~~~~~~~~~l~s~s~ 117 (264)
.......++++|++++|+++.. +|.+.+++++..+...... .+. .-.....++.++|++..++++.-.
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 3445677999999999999875 8899999998765443321 111 012336788899966544444444
Q ss_pred CCcEEEEECCCCC--c-----------------------ceEEEeecCCCcEEEEEec-cCCCccceEEEe----cc--c
Q psy9316 118 DKTVRIWDARTQK--S-----------------------QIMLASGSFDKSVAIFALD-KKGDLNKEVVYR----GH--T 165 (264)
Q Consensus 118 dg~i~vwd~~~~~--~-----------------------~~~~~~~~~d~~i~i~~~~-~~~~~~~~~~~~----~h--~ 165 (264)
...|.+|+++... . ...+++...++.|.++++. ..+.+....... +. .
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence 6689999886543 1 1134556667778888876 233222211111 11 1
Q ss_pred cceeeEEEcCCCCCEEEEEeCCCcEEEEeCCC--CcceeE---eecC-ceEEEEEcCCCCEEEEee-CCCeEEEEEcc
Q psy9316 166 GSVDQLCWHATNPDLLSTASGDKTVRIWDART--QKSQII---ATKG-ENINITWAPNGNTIAVGN-KEDLVTFIDVV 236 (264)
Q Consensus 166 ~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t--~~~~~~---~~~~-~~~~v~~sp~g~~la~gs-~d~~i~~~d~~ 236 (264)
..-..|.++|++..++++....++|-+|++.. +..... ...+ .+..++++|+|++|+++. .++.|.+|++.
T Consensus 245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 24567899998777788888899999999943 333221 1223 377899999999998886 67789999874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-06 Score=78.08 Aligned_cols=145 Identities=13% Similarity=0.144 Sum_probs=87.8
Q ss_pred EecccccEEeEEEecCCCCeEEEEeC-C--CcEEEEECCCCCcce-------------------EEEeecCCCcEEEEEe
Q psy9316 92 YRGHTGSVDQLCWHATNPDLLSTASG-D--KTVRIWDARTQKSQI-------------------MLASGSFDKSVAIFAL 149 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~~~~l~s~s~-d--g~i~vwd~~~~~~~~-------------------~~~~~~~d~~i~i~~~ 149 (264)
+..+...+...+|+|++. .++..+. + ..|.+||+++++... ++.+.+.++...||.+
T Consensus 191 l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 335667788999999764 4544443 3 359999998764211 2234455666667766
Q ss_pred ccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeC--CCCcceeEee-cCceEEEEEcCCCCEEEEeeC
Q psy9316 150 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA--RTQKSQIIAT-KGENINITWAPNGNTIAVGNK 226 (264)
Q Consensus 150 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~--~t~~~~~~~~-~~~~~~v~~sp~g~~la~gs~ 226 (264)
+..+... ..+..+........|+|++..++.+...+|...||.+ .++....... .......+|||||++++..+.
T Consensus 270 d~~~~~~--~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 270 NADGSGL--RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred ECCCCCc--EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 5433221 1223344445667899976555555444566677754 4444322222 223446789999999998876
Q ss_pred CC---eEEEEEcccCC
Q psy9316 227 ED---LVTFIDVVKSL 239 (264)
Q Consensus 227 d~---~i~~~d~~~~~ 239 (264)
++ .|++||+..+.
T Consensus 348 ~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 348 VGGAFKLYVQDLATGQ 363 (427)
T ss_pred cCCcEEEEEEECCCCC
Confidence 65 59999987543
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-08 Score=89.21 Aligned_cols=169 Identities=21% Similarity=0.336 Sum_probs=114.8
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCc----ccEEEecccccEEeEEEecCCCCeEEEEeCCC
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN----KEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 119 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg 119 (264)
+..|.+|+..|..++--.+.+-+++++.|+++++|.+...+... ...+|..|+.+|.++.|..+. +.+ .+.||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i--~ScD~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSI--ASCDG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-cee--eeccC
Confidence 45688999988888765566778899999999999987654322 235678999999999997633 444 46799
Q ss_pred cEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCC-CCCEEEEE-eCCCcEEEEeCCC
Q psy9316 120 TVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT-NPDLLSTA-SGDKTVRIWDART 197 (264)
Q Consensus 120 ~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~-~~~~i~s~-~~dg~i~iwD~~t 197 (264)
-+.+||.--+.....+ .|+.+ .+--.-|.++ ++ +..++++| +...+|+++|.++
T Consensus 805 giHlWDPFigr~Laq~----------~dapk-----------~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQM----------EDAPK-----------EGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred cceeecccccchhHhh----------hcCcc-----------cCCCceeEec---ccCcchheeeeccchhhheeeeccc
Confidence 9999997654322111 01100 0001123332 22 33344444 6789999999998
Q ss_pred Ccce--eEee-----cCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 198 QKSQ--IIAT-----KGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 198 ~~~~--~~~~-----~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
.+.. .... .+...+++..|.|+++|+|-.+|++.+.|.+++.
T Consensus 861 ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 861 CEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred ccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 7632 2211 1234578899999999999999999999999865
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-07 Score=78.32 Aligned_cols=183 Identities=18% Similarity=0.243 Sum_probs=119.9
Q ss_pred eEEEeecCceEEecccc------ccccccccCCCCEEEEEECCC-CCeEEEEECC--CcEEEEEeccCCCCcccEEEecc
Q psy9316 25 FHLVCKIDDYVKHFNTH------NDIKEYQAHGSKVHSVAWSCD-GRRLASGSFD--KSVAIFALDKKGDLNKEVVYRGH 95 (264)
Q Consensus 25 ~~~~~~~d~~~~~~~~~------~~~~~~~~h~~~V~~l~~s~~-g~~l~s~s~d--g~i~v~~~~~~~~~~~~~~~~~h 95 (264)
.+++|-.+|.+..|... +.+..+.. ..++..+.-++. ...+++||.. ..+++|+++... + ++.+.
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~---q--iw~aK 190 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK---Q--IWSAK 190 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccce---e--eeecc
Confidence 35678778887776443 12222322 356777777774 4556669998 899999987532 1 22221
Q ss_pred -----------cccEEeEEEecCC-CCeEEEEeCCCcEEEEECCCCCcc--------------------eEEEeecCCCc
Q psy9316 96 -----------TGSVDQLCWHATN-PDLLSTASGDKTVRIWDARTQKSQ--------------------IMLASGSFDKS 143 (264)
Q Consensus 96 -----------~~~v~~i~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~--------------------~~~~~~~~d~~ 143 (264)
.-.++++.|.+.. ...|++++.-+.+++||.+.+.-+ ..+.+|..-+.
T Consensus 191 NvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~ 270 (412)
T KOG3881|consen 191 NVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ 270 (412)
T ss_pred CCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch
Confidence 2235777787642 568899999999999999875421 14566777777
Q ss_pred EEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe-ecCceEEEEEcC
Q psy9316 144 VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA-TKGENINITWAP 216 (264)
Q Consensus 144 i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~-~~~~~~~v~~sp 216 (264)
+..||++...- ....+.+..+.|..|..+|. ..++++++-|..+||+|+++....... .....+.+-+.+
T Consensus 271 l~~FD~r~~kl--~g~~~kg~tGsirsih~hp~-~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~ 341 (412)
T KOG3881|consen 271 LAKFDLRGGKL--LGCGLKGITGSIRSIHCHPT-HPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRD 341 (412)
T ss_pred hheecccCcee--eccccCCccCCcceEEEcCC-CceEEeeccceeEEEeecccchhhhhhhhhccccEEEecC
Confidence 88888764321 12235566788999999885 469999999999999999995532222 233445555543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-06 Score=74.35 Aligned_cols=185 Identities=16% Similarity=0.202 Sum_probs=109.4
Q ss_pred eecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEec
Q psy9316 29 CKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 106 (264)
Q Consensus 29 ~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 106 (264)
-+.++.+...+. .+.+.++......-..+.|+|||++++.++.||.|.++|+...... ...+. .....++++++
T Consensus 12 ~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v---~~i~~-G~~~~~i~~s~ 87 (369)
T PF02239_consen 12 ERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV---ATIKV-GGNPRGIAVSP 87 (369)
T ss_dssp EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE---EEEE--SSEEEEEEE--
T ss_pred ecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEE---EEEec-CCCcceEEEcC
Confidence 344566666544 3455666544443345789999999999999999999998754321 12221 23457788888
Q ss_pred CCCCeEEEEe-CCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEe
Q psy9316 107 TNPDLLSTAS-GDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS 185 (264)
Q Consensus 107 ~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~ 185 (264)
++ +++++++ .++.+.++|.++.+....+-+++... .....++..|..+|....++++--
T Consensus 88 DG-~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~-------------------~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 88 DG-KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV-------------------DGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp TT-TEEEEEEEETTEEEEEETTT--EEEEEE--EE-T-------------------TTS---EEEEEE-SSSSEEEEEET
T ss_pred CC-CEEEEEecCCCceeEeccccccceeecccccccc-------------------cccCCCceeEEecCCCCEEEEEEc
Confidence 66 5555454 69999999998866443332221110 012245667766776666777766
Q ss_pred CCCcEEEEeCCCCccee---EeecCceEEEEEcCCCCEEEEe-eCCCeEEEEEccc
Q psy9316 186 GDKTVRIWDARTQKSQI---IATKGENINITWAPNGNTIAVG-NKEDLVTFIDVVK 237 (264)
Q Consensus 186 ~dg~i~iwD~~t~~~~~---~~~~~~~~~v~~sp~g~~la~g-s~d~~i~~~d~~~ 237 (264)
+.+.|-+.|........ ...........|+|+++|++++ ..++.+-++|+.+
T Consensus 148 d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 148 DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred cCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeecc
Confidence 67888888987654321 1122346788999999988664 6677888888664
|
... |
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=6e-07 Score=74.65 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=67.0
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEEECCCc-EEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEE
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKS-VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~-i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~ 122 (264)
......|.+.|.|++++.+|..||++|..|+ |++||..... ...+..--...+.+.+++|+|+. .+++++|..|++.
T Consensus 174 p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~-~l~E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlH 251 (346)
T KOG2111|consen 174 PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT-LLQELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLH 251 (346)
T ss_pred ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc-EeeeeecCCchheEEEEEeCCCc-cEEEEEcCCCeEE
Confidence 3567899999999999999999999999886 8999986533 22222222345779999999854 7899999999999
Q ss_pred EEECCCC
Q psy9316 123 IWDARTQ 129 (264)
Q Consensus 123 vwd~~~~ 129 (264)
++.++..
T Consensus 252 iF~l~~~ 258 (346)
T KOG2111|consen 252 IFSLRDT 258 (346)
T ss_pred EEEeecC
Confidence 9988753
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.3e-07 Score=79.81 Aligned_cols=175 Identities=16% Similarity=0.256 Sum_probs=121.7
Q ss_pred cccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCccc---EEEeccc-----ccEEeEEEecCCCC
Q psy9316 39 NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE---VVYRGHT-----GSVDQLCWHATNPD 110 (264)
Q Consensus 39 ~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~---~~~~~h~-----~~v~~i~~~~~~~~ 110 (264)
+.+.-+.-|....+.++++..++-..+|+.|+.||.|.+||......+... .....|. ..|+++.|.. ++-
T Consensus 163 EqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL 241 (703)
T KOG2321|consen 163 EQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGL 241 (703)
T ss_pred cccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-Cce
Confidence 334455566666789999999999999999999999999986543222110 0111232 2489999974 356
Q ss_pred eEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCC-CCEEEEEeCCCc
Q psy9316 111 LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN-PDLLSTASGDKT 189 (264)
Q Consensus 111 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~-~~~i~s~~~dg~ 189 (264)
.+++|+.+|.+.+||+++.+.... --++...+|..+.|.+.+ ...++| .....
T Consensus 242 ~~aVGts~G~v~iyDLRa~~pl~~-------------------------kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~ 295 (703)
T KOG2321|consen 242 HVAVGTSTGSVLIYDLRASKPLLV-------------------------KDHGYELPIKKLDWQDTDQQNKVVS-MDKRI 295 (703)
T ss_pred eEEeeccCCcEEEEEcccCCceee-------------------------cccCCccceeeecccccCCCceEEe-cchHH
Confidence 778899999999999987553211 012334578888887653 345665 45678
Q ss_pred EEEEeCCCCcceeE-eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 190 VRIWDARTQKSQII-ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 190 i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
++|||-.+++.... .....+..+++-|++-.+++|-.+.-+.-|=+...++
T Consensus 296 ~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 296 LKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred hhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEccccCC
Confidence 99999999886433 3344577899999999999999888877776665443
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-06 Score=70.56 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=65.8
Q ss_pred EEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc-ce---eEeecCceEEEEEcC-CCCEEEEeeCCCeEEEEE
Q psy9316 160 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-SQ---IIATKGENINITWAP-NGNTIAVGNKEDLVTFID 234 (264)
Q Consensus 160 ~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~-~~---~~~~~~~~~~v~~sp-~g~~la~gs~d~~i~~~d 234 (264)
..+.|.-......|+..+++++.+|+.|+.+..||++... .. .+.+...+.+|.-+| ...++++|+-|..|++||
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 5677888888889988888999999999999999999332 11 233455677776664 678999999999999999
Q ss_pred cccCCCCC
Q psy9316 235 VVKSLPPR 242 (264)
Q Consensus 235 ~~~~~~~~ 242 (264)
.|.+..+-
T Consensus 240 tRnm~kPl 247 (339)
T KOG0280|consen 240 TRNMGKPL 247 (339)
T ss_pred hhcccCcc
Confidence 99765543
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-06 Score=70.44 Aligned_cols=180 Identities=16% Similarity=0.151 Sum_probs=114.2
Q ss_pred EeecCceEEeccccccccccccCCCC--EEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEe
Q psy9316 28 VCKIDDYVKHFNTHNDIKEYQAHGSK--VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 105 (264)
Q Consensus 28 ~~~~d~~~~~~~~~~~~~~~~~h~~~--V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 105 (264)
+|+-|-.+|.+.+......+..|... +..+.+++|++++++.+....|..|.++..+..........-+..--+..|+
T Consensus 133 i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s 212 (344)
T KOG4532|consen 133 IASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS 212 (344)
T ss_pred eccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec
Confidence 45556666665554444445556554 7889999999999999999999999988655432221222233344566777
Q ss_pred cCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCC-CEEEEE
Q psy9316 106 ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP-DLLSTA 184 (264)
Q Consensus 106 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~-~~i~s~ 184 (264)
.. ...++++..||++.+||+++........+. +-..|.+.+..+.|++.+. +++.-.
T Consensus 213 ~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss---------------------trp~hnGa~R~c~Fsl~g~lDLLf~s 270 (344)
T KOG4532|consen 213 EN-DLQFAVVFQDGTCAIYDVRNMATPMAEISS---------------------TRPHHNGAFRVCRFSLYGLLDLLFIS 270 (344)
T ss_pred cC-cceEEEEecCCcEEEEEecccccchhhhcc---------------------cCCCCCCceEEEEecCCCcceEEEEe
Confidence 54 467889999999999999875432211110 1123777889999987543 344444
Q ss_pred eCCCcEEEEeCCCCcc-eeEee-c--------CceEEEEEcCCCCEEEEeeCCCe
Q psy9316 185 SGDKTVRIWDARTQKS-QIIAT-K--------GENINITWAPNGNTIAVGNKEDL 229 (264)
Q Consensus 185 ~~dg~i~iwD~~t~~~-~~~~~-~--------~~~~~v~~sp~g~~la~gs~d~~ 229 (264)
-.-+.+.+.|+++... +.... + ..+....|+.++..+.+.+.+..
T Consensus 271 Ehfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ 325 (344)
T KOG4532|consen 271 EHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQG 325 (344)
T ss_pred cCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchhh
Confidence 4577899999999763 33221 1 22455667777776666654433
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=3e-07 Score=74.57 Aligned_cols=178 Identities=22% Similarity=0.353 Sum_probs=111.1
Q ss_pred EEeecCceEEeccccccccccccCCCC-----EEEEEECCCCCeEEEEEC-----CCcEEEEEeccCCCCcccEEEeccc
Q psy9316 27 LVCKIDDYVKHFNTHNDIKEYQAHGSK-----VHSVAWSCDGRRLASGSF-----DKSVAIFALDKKGDLNKEVVYRGHT 96 (264)
Q Consensus 27 ~~~~~d~~~~~~~~~~~~~~~~~h~~~-----V~~l~~s~~g~~l~s~s~-----dg~i~v~~~~~~~~~~~~~~~~~h~ 96 (264)
..++.|+.+-.+...+.++ . .|+-+ -.+.+.-..++.|.++.. -+..++|+++..+..... .+. -
T Consensus 105 ~~~~~dg~~~v~s~~~~~~-~-~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~--~~~-~ 179 (319)
T KOG4714|consen 105 CIGYADGSLAVFSTDKDLA-L-MSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS--KKA-L 179 (319)
T ss_pred EecCCCceEEEEechHHHh-h-hhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccc--ccc-c
Confidence 4566777776665544221 1 11111 122233345666665432 244556665432222111 111 2
Q ss_pred ccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCC
Q psy9316 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 176 (264)
Q Consensus 97 ~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~ 176 (264)
..|.+++-+|...+++++|+.||.+-+||.++..... -.+..|.++|+.+.|+|.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~-------------------------S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV-------------------------SLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchH-------------------------HHHHHhhhhhhheeccCC
Confidence 2388999999888999999999999999998652110 134679999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCccee--Ee-------e--------------cCceEEE-EEcCCCCEEEEeeCCCeEEE
Q psy9316 177 NPDLLSTASGDKTVRIWDARTQKSQI--IA-------T--------------KGENINI-TWAPNGNTIAVGNKEDLVTF 232 (264)
Q Consensus 177 ~~~~i~s~~~dg~i~iwD~~t~~~~~--~~-------~--------------~~~~~~v-~~sp~g~~la~gs~d~~i~~ 232 (264)
+++.+.++++||++--||..+.-... +. . +....++ .|.--|..|++|+.-+.|++
T Consensus 235 ~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl 314 (319)
T KOG4714|consen 235 NPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYL 314 (319)
T ss_pred CchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEE
Confidence 99999999999999999998532110 00 0 0111122 25557889999998888888
Q ss_pred EE
Q psy9316 233 ID 234 (264)
Q Consensus 233 ~d 234 (264)
++
T Consensus 315 ~~ 316 (319)
T KOG4714|consen 315 TR 316 (319)
T ss_pred ec
Confidence 75
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.4e-06 Score=72.14 Aligned_cols=123 Identities=14% Similarity=0.287 Sum_probs=86.7
Q ss_pred ceEeecCCCCCceEeecCCCeeEEEeecCc-eEEecccccc-ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEec
Q psy9316 4 PVIQFHTPKSPEYKLLPSGSQFHLVCKIDD-YVKHFNTHND-IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALD 81 (264)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~ 81 (264)
|+++...+.--...-+-+...-.+++.-|+ .+.+++.... .+.+...-+.|.++..+|+|++++.+-....|-+.|++
T Consensus 352 ~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 352 YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 556666555544444444444556677777 6777776543 47777888899999999999999999887888888887
Q ss_pred cCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCc----EEEEECCCCC
Q psy9316 82 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT----VRIWDARTQK 130 (264)
Q Consensus 82 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~----i~vwd~~~~~ 130 (264)
+ ++.. .+-+...+-|+...|+|. .++++-+=-+|. |+++|+.+++
T Consensus 432 n-gnv~--~idkS~~~lItdf~~~~n-sr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 432 N-GNVR--LIDKSEYGLITDFDWHPN-SRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred C-CCee--EecccccceeEEEEEcCC-ceeEEEecCcceeeeeEEEEecCCCe
Confidence 5 3332 223455677999999984 478876655554 7899987754
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-06 Score=70.11 Aligned_cols=165 Identities=17% Similarity=0.131 Sum_probs=99.5
Q ss_pred CCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCC
Q psy9316 63 GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDK 142 (264)
Q Consensus 63 g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~ 142 (264)
..+|+.||.-|...+|...++.... .+...|...|.-+.=.-+....+..++.|.++++.+++.+...
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~--~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~---------- 151 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHL--YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK---------- 151 (344)
T ss_pred ccEEEeccccceeeeecccCcccce--eeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc----------
Confidence 4578888888999999876433211 1122233322111000011122334555666665555422110
Q ss_pred cEEEEEeccCCCccceEEEecccc--ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE-----eecCceEEEEEc
Q psy9316 143 SVAIFALDKKGDLNKEVVYRGHTG--SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII-----ATKGENINITWA 215 (264)
Q Consensus 143 ~i~i~~~~~~~~~~~~~~~~~h~~--~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~-----~~~~~~~~v~~s 215 (264)
+..|.+ .++.+.+++ ++.++++.+....|.+|.+........ ...+...+.+|+
T Consensus 152 ------------------~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s 212 (344)
T KOG4532|consen 152 ------------------FAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS 212 (344)
T ss_pred ------------------ceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec
Confidence 011222 266777776 467888888899999998765442211 123456789999
Q ss_pred CCCCEEEEeeCCCeEEEEEcccCCCCC-CCcccCcccceeeeee
Q psy9316 216 PNGNTIAVGNKEDLVTFIDVVKSLPPR-ERTLTSRGHLMETRSL 258 (264)
Q Consensus 216 p~g~~la~gs~d~~i~~~d~~~~~~~~-~~~~~~~~h~~~~~~~ 258 (264)
.....+|++++||.+.+||++.++.+. ++..+.--|.+.+|.+
T Consensus 213 ~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c 256 (344)
T KOG4532|consen 213 ENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVC 256 (344)
T ss_pred cCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEE
Confidence 999999999999999999999987776 3333333477788764
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.5e-07 Score=75.86 Aligned_cols=144 Identities=18% Similarity=0.277 Sum_probs=102.0
Q ss_pred EEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEE
Q psy9316 56 SVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIML 135 (264)
Q Consensus 56 ~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 135 (264)
-.+|+|+|++||+.+.- .+.+-|.++ ......+.. -..|..+-|..+.-.++.....|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~t---lq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck- 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSET---LQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK- 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccch---hhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE-
Confidence 35799999999998765 666666443 111111111 345777889876666677777899999999864331111
Q ss_pred EeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecC-ceEEEEE
Q psy9316 136 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKG-ENINITW 214 (264)
Q Consensus 136 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~-~~~~v~~ 214 (264)
...-.+++..++|+|++..++.+..=|-.|.+|.+.++......++. .+-.++|
T Consensus 87 -------------------------Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f 141 (447)
T KOG4497|consen 87 -------------------------IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAF 141 (447)
T ss_pred -------------------------eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEE
Confidence 12234688899999988888888888999999999998865555544 3456899
Q ss_pred cCCCCEEEEeeCCCeE
Q psy9316 215 APNGNTIAVGNKEDLV 230 (264)
Q Consensus 215 sp~g~~la~gs~d~~i 230 (264)
.|||++.|..+.-+..
T Consensus 142 ~~dg~f~ai~sRrDCk 157 (447)
T KOG4497|consen 142 HPDGQFCAILSRRDCK 157 (447)
T ss_pred CCCCceeeeeecccHH
Confidence 9999999999876543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-05 Score=71.54 Aligned_cols=157 Identities=14% Similarity=0.183 Sum_probs=91.6
Q ss_pred cEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEe---CCCcEEEEECCCCCcce-----------------
Q psy9316 74 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS---GDKTVRIWDARTQKSQI----------------- 133 (264)
Q Consensus 74 ~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~----------------- 133 (264)
.|.++|.+ +.. ...+..|...+....|+|++. .|+..+ .+..|.+||+.+++...
T Consensus 183 ~l~~~d~d--g~~--~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 183 RLAIMDQD--GAN--VRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred EEEEECCC--CCC--cEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence 56666543 322 123456777899999999765 444444 24679999997754211
Q ss_pred --EEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCC--cEEEEeCCCCcceeEee-cCc
Q psy9316 134 --MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK--TVRIWDARTQKSQIIAT-KGE 208 (264)
Q Consensus 134 --~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg--~i~iwD~~t~~~~~~~~-~~~ 208 (264)
++.+.+.++...||.++..+.. ...+..+........|+|++..++.+...+| .|+++|+.++....... .+.
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~ 335 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR 335 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc
Confidence 2233344444444443322211 1122334444566899997654444433333 67888988765433322 334
Q ss_pred eEEEEEcCCCCEEEEeeCC---CeEEEEEccc
Q psy9316 209 NINITWAPNGNTIAVGNKE---DLVTFIDVVK 237 (264)
Q Consensus 209 ~~~v~~sp~g~~la~gs~d---~~i~~~d~~~ 237 (264)
.....|||+|++|+..+.+ ..+.+||+..
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 5568899999999887654 3588888643
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.2e-07 Score=73.84 Aligned_cols=186 Identities=16% Similarity=0.246 Sum_probs=112.8
Q ss_pred CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCccc--EEEecc------------cccEEeEEEecCC-CCeEEEE
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE--VVYRGH------------TGSVDQLCWHATN-PDLLSTA 115 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~--~~~~~h------------~~~v~~i~~~~~~-~~~l~s~ 115 (264)
.+.|+++.|..-|.+|++|...|.+.+|.-+....++.. ..+++| ...|..+.|.... ...++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 457999999999999999999999999975432211110 013333 2357788886443 2355566
Q ss_pred eCCCcEEEEECCCCCc------------------c---------------eE----------------------------
Q psy9316 116 SGDKTVRIWDARTQKS------------------Q---------------IM---------------------------- 134 (264)
Q Consensus 116 s~dg~i~vwd~~~~~~------------------~---------------~~---------------------------- 134 (264)
+.|++|++|.+..... . ..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 7899999998754200 0 00
Q ss_pred EEeecCCCcEEEEEeccCCCccceEEEecccc-----ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc-----ceeE-
Q psy9316 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTG-----SVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-----SQII- 203 (264)
Q Consensus 135 ~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~-----~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~-----~~~~- 203 (264)
......|-.|.+|.+......-.+...+.|.. -|++..|+|.....+.-.+..|.|++-|++... ..+.
T Consensus 186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe 265 (460)
T COG5170 186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE 265 (460)
T ss_pred eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence 01112233455565543222112222233322 356677888666666667889999999998432 1111
Q ss_pred eec------------CceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 204 ATK------------GENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 204 ~~~------------~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
... ..+..+.|+|+|+|+++-. -.++++||++-
T Consensus 266 ~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm 310 (460)
T COG5170 266 LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNM 310 (460)
T ss_pred hccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccc
Confidence 010 1234688999999998765 67899999985
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.8e-07 Score=79.29 Aligned_cols=104 Identities=15% Similarity=0.210 Sum_probs=77.3
Q ss_pred EEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEE
Q psy9316 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENINI 212 (264)
Q Consensus 135 ~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v 212 (264)
+++++..|-+...|.+.+...... ..-.+.+..++-+|.+ .++-.|...|+|.+|...+++. +...+.+.+.+|
T Consensus 224 L~~~~~~G~L~Y~DVS~GklVa~~---~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~si 299 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKLVASI---RTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSI 299 (545)
T ss_pred eeecccCCceEEEeechhhhhHHH---HccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceE
Confidence 556666666666666543322211 1223466777778865 5778899999999999998885 445677889999
Q ss_pred EEcCCCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 213 TWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 213 ~~sp~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
++.++|+|+||.+.|..++|||++.-....
T Consensus 300 Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 300 AVDRGGRYMATTGLDRKVKIWDLRNFYQLH 329 (545)
T ss_pred EECCCCcEEeecccccceeEeeeccccccc
Confidence 999999999999999999999999755444
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.55 E-value=7e-05 Score=61.84 Aligned_cols=31 Identities=10% Similarity=0.227 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 208 ENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 208 ~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
.+..+..||||+.||+..-+|.|.+|++..-
T Consensus 231 ~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 231 GIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 4678999999999999999999999998763
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.3e-06 Score=73.26 Aligned_cols=156 Identities=13% Similarity=0.180 Sum_probs=90.2
Q ss_pred cEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeC---CCcEEEEECCCCCcce-----------------
Q psy9316 74 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG---DKTVRIWDARTQKSQI----------------- 133 (264)
Q Consensus 74 ~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~----------------- 133 (264)
.|.+||.+. ... ..+..+...+....|+|++. .++..+. +..+++||+.+++...
T Consensus 185 ~l~i~D~~g--~~~--~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 185 ALQVADSDG--YNP--QTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEECCCC--CCc--eEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence 577777642 211 22445667788999999764 5554553 3469999997654211
Q ss_pred --EEEeecCCCc--EEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCc--EEEEeCCCCcceeEeec-
Q psy9316 134 --MLASGSFDKS--VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT--VRIWDARTQKSQIIATK- 206 (264)
Q Consensus 134 --~~~~~~~d~~--i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~--i~iwD~~t~~~~~~~~~- 206 (264)
++.+.+.++. |.+|++... .. ..+..+.......+|+|++..++.+...+|. |+++|+.+++.......
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g-~~---~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g 335 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSR-QL---TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG 335 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCC-Ce---EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC
Confidence 1222333343 444544322 11 1223333344568999876545444444555 66667776654333222
Q ss_pred CceEEEEEcCCCCEEEEeeCCC---eEEEEEcccC
Q psy9316 207 GENINITWAPNGNTIAVGNKED---LVTFIDVVKS 238 (264)
Q Consensus 207 ~~~~~v~~sp~g~~la~gs~d~---~i~~~d~~~~ 238 (264)
.....++|||+|++++..+.++ .|.+||+.++
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 2344689999999998876543 5899998653
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5e-05 Score=68.44 Aligned_cols=157 Identities=11% Similarity=0.135 Sum_probs=88.5
Q ss_pred cEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEe--CCCcEEEEECCCCCcce------------------
Q psy9316 74 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS--GDKTVRIWDARTQKSQI------------------ 133 (264)
Q Consensus 74 ~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~------------------ 133 (264)
.|.++|.+. ... ..+..+...+....|+|++..++.+.. .+..+.+||+++++...
T Consensus 180 ~l~~~d~dg--~~~--~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 180 ELRVSDYDG--YNQ--FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eEEEEcCCC--CCC--EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC
Confidence 577776542 211 123345567889999997755444332 24568899987653211
Q ss_pred -EEEeecCCCc--EEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEE--eCCCCcceeEeec-C
Q psy9316 134 -MLASGSFDKS--VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW--DARTQKSQIIATK-G 207 (264)
Q Consensus 134 -~~~~~~~d~~--i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iw--D~~t~~~~~~~~~-~ 207 (264)
++.+.+.++. |.+|++... .. ..+..+...+....|+|++..++.+...+|...|| |+.++........ .
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg-~~---~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~ 331 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASG-QI---RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS 331 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCC-CE---EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC
Confidence 1222233333 444554322 11 12223334567789999765454444444554555 7776654333222 2
Q ss_pred ceEEEEEcCCCCEEEEeeCC---CeEEEEEcccC
Q psy9316 208 ENINITWAPNGNTIAVGNKE---DLVTFIDVVKS 238 (264)
Q Consensus 208 ~~~~v~~sp~g~~la~gs~d---~~i~~~d~~~~ 238 (264)
......|+|||++++..+.+ ..+++||+..+
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 34568899999999887654 34888897654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-05 Score=71.42 Aligned_cols=140 Identities=14% Similarity=0.195 Sum_probs=80.6
Q ss_pred CCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCC--cEEEEECCC
Q psy9316 52 SKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK--TVRIWDART 128 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg--~i~vwd~~~ 128 (264)
+......|+|||++|+..+ .+|...+|.++..........+..+...+....|+|++..++++...+| .|.+||+.+
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3445779999999888765 4676667755432111111223334455677899997755544444333 577778765
Q ss_pred CCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeC--CCcEEEEeCCCCcceeEe-e
Q psy9316 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG--DKTVRIWDARTQKSQIIA-T 205 (264)
Q Consensus 129 ~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~--dg~i~iwD~~t~~~~~~~-~ 205 (264)
++...+ ......+....|+|++..+++++.. ...|+++|+.+++..... .
T Consensus 361 g~~~~L---------------------------t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 361 GRDYQL---------------------------TTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG 413 (428)
T ss_pred CCeEEc---------------------------cCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 542211 0011234457888876555545443 456888899887653333 2
Q ss_pred cCceEEEEEcCCC
Q psy9316 206 KGENINITWAPNG 218 (264)
Q Consensus 206 ~~~~~~v~~sp~g 218 (264)
.+.....+|+|..
T Consensus 414 ~g~~~~p~Ws~~~ 426 (428)
T PRK01029 414 SGEKRFPSWGAFP 426 (428)
T ss_pred CCcccCceecCCC
Confidence 3445567898854
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00018 Score=62.71 Aligned_cols=228 Identities=11% Similarity=0.103 Sum_probs=122.9
Q ss_pred ecCCCCCceEeecCCCeeEEEee---------cCceEEecccccc--ccccccC-------CCCEEEEEECCCCCeEEEE
Q psy9316 8 FHTPKSPEYKLLPSGSQFHLVCK---------IDDYVKHFNTHND--IKEYQAH-------GSKVHSVAWSCDGRRLASG 69 (264)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~---------~d~~~~~~~~~~~--~~~~~~h-------~~~V~~l~~s~~g~~l~s~ 69 (264)
+..-+.|...+.|.+..+-+.+. -++.+..++..+. +.++..- ...-..++++|||++|+..
T Consensus 43 i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 43 TDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred EEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEe
Confidence 33445677776677766555555 4778888876432 3333211 1223478899999999977
Q ss_pred E-C-CCcEEEEEeccCCCCcccE------EEecccccEEeEEEecCCCCeEEEEeCCCcEE-----EEEC------CCC-
Q psy9316 70 S-F-DKSVAIFALDKKGDLNKEV------VYRGHTGSVDQLCWHATNPDLLSTASGDKTVR-----IWDA------RTQ- 129 (264)
Q Consensus 70 s-~-dg~i~v~~~~~~~~~~~~~------~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~-----vwd~------~~~- 129 (264)
. . +..+.+.|+.......... ++..-+..-.. .+.++....++-..+|+.. ++|. ...
T Consensus 123 n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~ 200 (352)
T TIGR02658 123 QFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFM--HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPA 200 (352)
T ss_pred cCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEE--EeecCceEEEEecCCCceEEeeeeeecCCccccccCCc
Confidence 6 3 6889999987643222111 11111111111 1112222222222233322 2332 111
Q ss_pred ----CcceEEEeecCCCcEEEEEeccCCCccce-E---EEe-----ccccceeeEEEcCCCCCEEEEEe---------CC
Q psy9316 130 ----KSQIMLASGSFDKSVAIFALDKKGDLNKE-V---VYR-----GHTGSVDQLCWHATNPDLLSTAS---------GD 187 (264)
Q Consensus 130 ----~~~~~~~~~~~d~~i~i~~~~~~~~~~~~-~---~~~-----~h~~~i~~i~~~~~~~~~i~s~~---------~d 187 (264)
....++++ +.|++.+.|+......... . .+. =....+..++++|+++.+++... ..
T Consensus 201 ~~~~dg~~~~vs--~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 201 YSNKSGRLVWPT--YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred eEcCCCcEEEEe--cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence 01122332 2377777775432211110 0 010 01234455899988777766432 23
Q ss_pred CcEEEEeCCCCcceeEe-ecCceEEEEEcCCCC-EEEEee-CCCeEEEEEcccCC
Q psy9316 188 KTVRIWDARTQKSQIIA-TKGENINITWAPNGN-TIAVGN-KEDLVTFIDVVKSL 239 (264)
Q Consensus 188 g~i~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~-~la~gs-~d~~i~~~d~~~~~ 239 (264)
+.|.++|..+++..... ....+..++++|||+ +|.+.+ .++.|.++|+.++.
T Consensus 279 ~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 58999999998864443 345688999999999 776555 57889999987543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.5e-05 Score=68.24 Aligned_cols=141 Identities=18% Similarity=0.283 Sum_probs=82.8
Q ss_pred EecccccEEeEEEecCCCCeEEEEeCC---CcEEEEECCCCCcce-------------------EEEeecCCCc--EEEE
Q psy9316 92 YRGHTGSVDQLCWHATNPDLLSTASGD---KTVRIWDARTQKSQI-------------------MLASGSFDKS--VAIF 147 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~-------------------~~~~~~~d~~--i~i~ 147 (264)
+..+...+....|+|++. .++.++.+ ..|++||+.+++... ++.+.+.++. |.+|
T Consensus 185 l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred eecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence 334566788889999764 45444432 479999998753211 1222233333 3334
Q ss_pred EeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCC--cEEEEeCCCCcceeEe-ecCceEEEEEcCCCCEEEEe
Q psy9316 148 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK--TVRIWDARTQKSQIIA-TKGENINITWAPNGNTIAVG 224 (264)
Q Consensus 148 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg--~i~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~~la~g 224 (264)
++... .. ..+..+........|+|++..++++...++ .|+++|+.+++..... .......+.|+|+|++++..
T Consensus 264 d~~~~-~~---~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 264 DLDGK-QL---TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred ECCCC-CE---EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEE
Confidence 43221 11 112223333446688886544444443344 5777888876643332 23345678999999999999
Q ss_pred eCCC---eEEEEEccc
Q psy9316 225 NKED---LVTFIDVVK 237 (264)
Q Consensus 225 s~d~---~i~~~d~~~ 237 (264)
+.++ .|.+||+..
T Consensus 340 ~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 340 HREGGGFNIAVMDLDG 355 (417)
T ss_pred EccCCceEEEEEeCCC
Confidence 8876 789999765
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.4e-05 Score=76.60 Aligned_cols=178 Identities=14% Similarity=0.175 Sum_probs=106.3
Q ss_pred EEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCcc------cEEEe------cccccEEeEEEecCCCCeEEEEeCCCc
Q psy9316 54 VHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNK------EVVYR------GHTGSVDQLCWHATNPDLLSTASGDKT 120 (264)
Q Consensus 54 V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~------~~~~~------~h~~~v~~i~~~~~~~~~l~s~s~dg~ 120 (264)
-..++++| ++..+++.+.++.|.+|+.... .... ..... ..-.....++++|++..++++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g-~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDG-VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCC-eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 35789999 4555566667788999986532 1100 00000 011235678899877657777778899
Q ss_pred EEEEECCCCCcceEEEeecCC-CcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q psy9316 121 VRIWDARTQKSQIMLASGSFD-KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 199 (264)
Q Consensus 121 i~vwd~~~~~~~~~~~~~~~d-~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~ 199 (264)
|++||++++.. .+..++.. ..-.++.....+....... ..| -..+++++++ .++++...++.|++||..++.
T Consensus 764 Irv~D~~tg~~--~~~~gg~~~~~~~l~~fG~~dG~g~~~~-l~~---P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 764 IRALDLKTGGS--RLLAGGDPTFSDNLFKFGDHDGVGSEVL-LQH---PLGVLCAKDG-QIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred EEEEECCCCcE--EEEEecccccCcccccccCCCCchhhhh-ccC---CceeeEeCCC-cEEEEECCCCEEEEEECCCCe
Confidence 99999986543 22222110 0000111100000000000 112 2356777754 688888899999999998876
Q ss_pred ceeEeec---------------CceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 200 SQIIATK---------------GENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 200 ~~~~~~~---------------~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
....... ..+..++++++|+.+++-+.++.|++||+.++.
T Consensus 837 v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 837 VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 4332211 135679999999999999999999999987643
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=7e-05 Score=67.21 Aligned_cols=176 Identities=11% Similarity=0.115 Sum_probs=97.7
Q ss_pred CEEEEEECCCCCe-EEEEECC---CcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCC--cEEEEEC
Q psy9316 53 KVHSVAWSCDGRR-LASGSFD---KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK--TVRIWDA 126 (264)
Q Consensus 53 ~V~~l~~s~~g~~-l~s~s~d---g~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg--~i~vwd~ 126 (264)
.+....|+|||+. ++..+.+ ..|.++|+.. +... .+....+......|+|++..++++.+.++ .|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~~---~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GKKE---KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC-CcEE---EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 6778999999985 6655554 3466666543 2211 12224445566789998766766666554 5777787
Q ss_pred CCCCcce-------------------EEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCC
Q psy9316 127 RTQKSQI-------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD 187 (264)
Q Consensus 127 ~~~~~~~-------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~d 187 (264)
.+++... ++.+....+...||.++..+......++.+ .....|+|++..++.+....
T Consensus 265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g----~~~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG----KNNSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC----CcCceECCCCCEEEEEEcCC
Confidence 6653211 111222223334444333222111112211 12248999766555554433
Q ss_pred --------CcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCC---eEEEEEcc
Q psy9316 188 --------KTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKED---LVTFIDVV 236 (264)
Q Consensus 188 --------g~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~---~i~~~d~~ 236 (264)
..|.+.|+.++........+.....+|+|||+.++..+.++ .+.++++.
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 36788898887654333333334688999999887776443 35666654
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-06 Score=79.05 Aligned_cols=162 Identities=15% Similarity=0.274 Sum_probs=111.0
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCC------------CCcccEEEecccccEEeEEEecCCCCeEEEEe
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG------------DLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS 116 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~------------~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s 116 (264)
..+....|+.|+.+..+|+.||.||.+++..+.+.. .+.+...+++|++.|.-+.|.... +.+.++.
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSD 90 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSD 90 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccC
Confidence 345678999999999999999999999999876421 222334578999999999998644 6777777
Q ss_pred CCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCC
Q psy9316 117 GDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 196 (264)
Q Consensus 117 ~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~ 196 (264)
.+|.|.+|-+-++. |-..+-+ ....+-|.+++|+.++ ..|...-.||.|.+=.+.
T Consensus 91 t~GlIiVWmlykgs----------------W~EEMiN--------nRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGS----------------WCEEMIN--------NRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred CCceEEEEeeeccc----------------HHHHHhh--------CcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeec
Confidence 89999999886543 1000000 1123457778888754 444555677777665554
Q ss_pred CCcceeEeecC-ceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 197 TQKSQIIATKG-ENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 197 t~~~~~~~~~~-~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.....-....+ ...-+.||||.+.+..+-.+|-+.++|-.
T Consensus 146 GNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 146 GNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred cceecchhcchheccceeecccHHHHHhhhcCCcEEEeccc
Confidence 43321111122 22357899999999999999999999954
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.3e-06 Score=73.41 Aligned_cols=194 Identities=19% Similarity=0.242 Sum_probs=127.6
Q ss_pred EeecCCCeeEEEeecCceEEecccc-----ccccccccCCCCEEEEEECCCCCeEEEEEC-CCcEEEEEeccCCCCcccE
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTH-----NDIKEYQAHGSKVHSVAWSCDGRRLASGSF-DKSVAIFALDKKGDLNKEV 90 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~-----~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~-dg~i~v~~~~~~~~~~~~~ 90 (264)
+.+|+...+.+.++.||..|.|... +-++.|..|-+.|..++.+.++-...+.+. |..+++||+..- .+....
T Consensus 14 hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~-Dminmi 92 (558)
T KOG0882|consen 14 HVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF-DMINMI 92 (558)
T ss_pred eEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc-chhhhc
Confidence 5678888888999999999998653 345677889999999999999999999877 999999998642 111111
Q ss_pred EEecccccEEeEEEecCCC--C-eEE-EEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEecccc
Q psy9316 91 VYRGHTGSVDQLCWHATNP--D-LLS-TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166 (264)
Q Consensus 91 ~~~~h~~~v~~i~~~~~~~--~-~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~ 166 (264)
.+.--.+. ++|....+ . .++ +.-.+|.+.++|-....++. ...-.-|.+
T Consensus 93 KL~~lPg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~------------------------~~fkklH~s 145 (558)
T KOG0882|consen 93 KLVDLPGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD------------------------GYFKKLHFS 145 (558)
T ss_pred ccccCCCc---eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc------------------------ceecccccC
Confidence 11111111 12221111 1 222 22235556665544322111 111245889
Q ss_pred ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCC-Cc-----cee-E----------eecCceEEEEEcCCCCEEEEeeCCCe
Q psy9316 167 SVDQLCWHATNPDLLSTASGDKTVRIWDART-QK-----SQI-I----------ATKGENINITWAPNGNTIAVGNKEDL 229 (264)
Q Consensus 167 ~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t-~~-----~~~-~----------~~~~~~~~v~~sp~g~~la~gs~d~~ 229 (264)
+|..+.+++. .+.++|+...|+|.-|..+. .+ ... . .....+.++.|+|+|..+++=+.|..
T Consensus 146 PV~~i~y~qa-~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk 224 (558)
T KOG0882|consen 146 PVKKIRYNQA-GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK 224 (558)
T ss_pred ceEEEEeecc-ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE
Confidence 9999999985 46778888999999998873 11 000 0 01234568999999999999999999
Q ss_pred EEEEEcccCC
Q psy9316 230 VTFIDVVKSL 239 (264)
Q Consensus 230 i~~~d~~~~~ 239 (264)
|++++...+.
T Consensus 225 VR~F~~KtGk 234 (558)
T KOG0882|consen 225 VRGFVFKTGK 234 (558)
T ss_pred EEEEEeccch
Confidence 9999987643
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-06 Score=74.13 Aligned_cols=127 Identities=17% Similarity=0.211 Sum_probs=86.8
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCC--CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEEC
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG--DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 126 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~--~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~ 126 (264)
..++.|.+++|..-++.++.|+.+|.|.++|+.... .......+ -|.+.|+++.....++.+|.+++.+|+|++||+
T Consensus 250 ~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 250 QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 366789999999889999999999999999987642 22222222 488889988876545577878889999999999
Q ss_pred CCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeE--EEcCCCCCEEEEEeCCCcEEEEeCCCCcc
Q psy9316 127 RTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL--CWHATNPDLLSTASGDKTVRIWDARTQKS 200 (264)
Q Consensus 127 ~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i--~~~~~~~~~i~s~~~dg~i~iwD~~t~~~ 200 (264)
+--+... .|+ ++.+|...-.-+ -.++ ....|+++++|...+||.++.+..
T Consensus 329 R~~K~~~---------~V~--------------qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 329 RATKCKK---------SVM--------------QYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhccc---------cee--------------eeeccccccccccccccc-ccceEEEccCeeEEEEEecccCce
Confidence 8644321 111 223332111111 1122 235778899999999999998764
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.7e-06 Score=68.37 Aligned_cols=131 Identities=17% Similarity=0.262 Sum_probs=86.3
Q ss_pred CCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 52 SKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 52 ~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
..|.+++-+| +.+.++.|+.||.+.+||.... .. ....++.|++.+..+.|+|.++..|++++.||.+-.||..+.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-~~-p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~- 256 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-AM-PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT- 256 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccc-cc-hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc-
Confidence 3499999999 5567778999999999998753 22 234578999999999999999999999999999999998752
Q ss_pred cceEEEeecCCCcEEEEEeccCCCccce-E----EEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEe
Q psy9316 131 SQIMLASGSFDKSVAIFALDKKGDLNKE-V----VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194 (264)
Q Consensus 131 ~~~~~~~~~~d~~i~i~~~~~~~~~~~~-~----~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD 194 (264)
.+.++.....+..|- .++..+. . .+..-.-.|+.+.. .+..+++|+.-+-|++++
T Consensus 257 ---~l~i~~~~s~~s~WL---sgD~v~s~i~i~~ll~~~~~SinsfDV---~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 257 ---FLSISNQASVISSWL---SGDPVKSRIEITSLLPSRSLSINSFDV---LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ---eEEecCccccccccc---cCCcccceEeeeccccccceeeeeeec---cCceEEeccccceEEEec
Confidence 233333333344452 1111110 0 01111123444433 245677888888888764
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.6e-06 Score=49.28 Aligned_cols=35 Identities=34% Similarity=0.912 Sum_probs=31.8
Q ss_pred EEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEE
Q psy9316 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125 (264)
Q Consensus 90 ~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd 125 (264)
..+++|.+.|.+++|+|. +.++++++.|+.|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 457899999999999996 57999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.3e-05 Score=65.54 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=61.6
Q ss_pred EeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc---eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 161 ~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~---~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.-+|-+.+..++|+|++ .+|+++..|..|+|=.....-. ....+...+..++.-+ +..|++|+.|+++++||.+.
T Consensus 147 ~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEeccc
Confidence 35888999999999865 7888999999999876554321 1223555677777775 55589999999999999998
Q ss_pred CCCCCC
Q psy9316 238 SLPPRE 243 (264)
Q Consensus 238 ~~~~~~ 243 (264)
+...++
T Consensus 225 gk~L~t 230 (390)
T KOG3914|consen 225 GKLLDT 230 (390)
T ss_pred CCcccc
Confidence 777654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.4e-06 Score=69.06 Aligned_cols=181 Identities=17% Similarity=0.223 Sum_probs=116.0
Q ss_pred ccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecc-----cccEEeEEEecCCCCeEEEEeCCCcEE
Q psy9316 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH-----TGSVDQLCWHATNPDLLSTASGDKTVR 122 (264)
Q Consensus 48 ~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h-----~~~v~~i~~~~~~~~~l~s~s~dg~i~ 122 (264)
..|.--|.++.|+.|.+.++++ .|-.|.+|+++.....-...-.+.| +..|++..|+|...+.+.-++..|.|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 3455568899999999998886 6789999988754322222223344 345788889998877787788899999
Q ss_pred EEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee
Q psy9316 123 IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI 202 (264)
Q Consensus 123 vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~ 202 (264)
+-|++.... -|....++.+..++... .-+..-...|..+.|+++ +.+|++ -.-.+++|||.+.....+
T Consensus 248 l~DlRq~al--------cdn~~klfe~~~D~v~~--~ff~eivsSISD~kFs~n-gryIls-RdyltvkiwDvnm~k~pi 315 (460)
T COG5170 248 LNDLRQSAL--------CDNSKKLFELTIDGVDV--DFFEEIVSSISDFKFSDN-GRYILS-RDYLTVKIWDVNMAKNPI 315 (460)
T ss_pred ehhhhhhhh--------ccCchhhhhhccCcccc--hhHHHHhhhhcceEEcCC-CcEEEE-eccceEEEEecccccCCc
Confidence 999984221 12222222221111110 012233467888999875 457765 446799999998655322
Q ss_pred Ee---ec------------Cce---EEEEEcCCCCEEEEeeCCCeEEEEEcccCCCC
Q psy9316 203 IA---TK------------GEN---INITWAPNGNTIAVGNKEDLVTFIDVVKSLPP 241 (264)
Q Consensus 203 ~~---~~------------~~~---~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~ 241 (264)
.. +. ..+ ..+.||-|.+.+.+|+-++-.-++.+..++..
T Consensus 316 kTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg~~ 372 (460)
T COG5170 316 KTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFK 372 (460)
T ss_pred eeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccCCCC
Confidence 21 11 112 35889999999999998888778876554443
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00024 Score=63.56 Aligned_cols=183 Identities=17% Similarity=0.229 Sum_probs=99.5
Q ss_pred cCCCCEEEEEECCCC--CeEEE-----EECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeC--CC
Q psy9316 49 AHGSKVHSVAWSCDG--RRLAS-----GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG--DK 119 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g--~~l~s-----~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~--dg 119 (264)
.|...|..+.++|-+ ..|++ .|.-..+++|.+...+.-............-..+.|.+.+..+|+..+. |+
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK 242 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence 466778899998863 34443 3455679998765222111100011122333457788766555544443 44
Q ss_pred ---------cEEEEECCCCCc--------ceEEEe------------ecCCCcEEEEEeccCCCccceEEEeccccceee
Q psy9316 120 ---------TVRIWDARTQKS--------QIMLAS------------GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 170 (264)
Q Consensus 120 ---------~i~vwd~~~~~~--------~~~~~~------------~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~ 170 (264)
++++.+++.... ..+-+. |-.--.++||+++-+ ..+.--.++=+.
T Consensus 243 tn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------~v~df~egpRN~ 316 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------PVFDFPEGPRNT 316 (566)
T ss_pred CCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------EeEeCCCCCccc
Confidence 255555542110 001111 111123444443311 112222355677
Q ss_pred EEEcCCCCCEEEEEeC--CCcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCC------CeEEEEEccc
Q psy9316 171 LCWHATNPDLLSTASG--DKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKE------DLVTFIDVVK 237 (264)
Q Consensus 171 i~~~~~~~~~i~s~~~--dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d------~~i~~~d~~~ 237 (264)
+-|+|.+..++++|-+ .|.+.|||+.+.++.....-....-+.|+|||.++.|++.. +-++||+...
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 8999976555555443 59999999999654322222233457899999999888654 6689999654
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.5e-06 Score=69.75 Aligned_cols=84 Identities=26% Similarity=0.317 Sum_probs=67.0
Q ss_pred cccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEE
Q psy9316 45 KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124 (264)
Q Consensus 45 ~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vw 124 (264)
+...+|-+-+++++|+||+++|+++..|+.|++-.+.. ......-.-+|+..|..++..+ ++.|+|+|.|+++++|
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa--~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA--TFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLW 220 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc--ccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEE
Confidence 34558999999999999999999999999999976543 2221122458999999998864 3568899999999999
Q ss_pred ECCCCCcc
Q psy9316 125 DARTQKSQ 132 (264)
Q Consensus 125 d~~~~~~~ 132 (264)
|.++++..
T Consensus 221 d~~sgk~L 228 (390)
T KOG3914|consen 221 DITSGKLL 228 (390)
T ss_pred ecccCCcc
Confidence 99988754
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00022 Score=64.61 Aligned_cols=143 Identities=14% Similarity=0.178 Sum_probs=81.2
Q ss_pred cccccEEeEEEecCCCCeEEEEeCCC--cEEEEECCCCCcce-------------------EEEeecCCCcEEEEEeccC
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTASGDK--TVRIWDARTQKSQI-------------------MLASGSFDKSVAIFALDKK 152 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~~-------------------~~~~~~~d~~i~i~~~~~~ 152 (264)
.....+....|+|++..++.+...++ .|.+||+.+++... ++.+.+.++...||.++..
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 45567888899997755554444444 47888987654211 2233344555444444332
Q ss_pred CCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCc--EEEEeCCCCcceeEeec-CceEEEEEcCCCCEEEEeeCC-C
Q psy9316 153 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT--VRIWDARTQKSQIIATK-GENINITWAPNGNTIAVGNKE-D 228 (264)
Q Consensus 153 ~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~--i~iwD~~t~~~~~~~~~-~~~~~v~~sp~g~~la~gs~d-~ 228 (264)
+... .....+........|+|++..++.+...+|. |+++|+.+++....... ......+|+|||++|+..+.+ +
T Consensus 295 tg~~--~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g 372 (448)
T PRK04792 295 TKAL--TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNG 372 (448)
T ss_pred CCCe--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCC
Confidence 2211 1222333345668899976656555544444 56668877664333222 233457899999999877653 3
Q ss_pred --eEEEEEcccC
Q psy9316 229 --LVTFIDVVKS 238 (264)
Q Consensus 229 --~i~~~d~~~~ 238 (264)
.|.++|+..+
T Consensus 373 ~~~I~~~dl~~g 384 (448)
T PRK04792 373 KFNIARQDLETG 384 (448)
T ss_pred ceEEEEEECCCC
Confidence 3556776543
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.8e-05 Score=66.16 Aligned_cols=180 Identities=17% Similarity=0.267 Sum_probs=117.8
Q ss_pred EEeecCceEEecccccc--cccccc--C-CCCEEEEEEC------C--------------CCCeEEEEECCCcEEEEEec
Q psy9316 27 LVCKIDDYVKHFNTHND--IKEYQA--H-GSKVHSVAWS------C--------------DGRRLASGSFDKSVAIFALD 81 (264)
Q Consensus 27 ~~~~~d~~~~~~~~~~~--~~~~~~--h-~~~V~~l~~s------~--------------~g~~l~s~s~dg~i~v~~~~ 81 (264)
.....||.+++|++.+. -..|.. | .+.-.++.|. | |...|+-|...|.|-+|++.
T Consensus 9 A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~ 88 (541)
T KOG4547|consen 9 ALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVA 88 (541)
T ss_pred eecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEec
Confidence 34466888899977432 223332 1 3344444443 1 22246677788999999876
Q ss_pred cCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEE
Q psy9316 82 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161 (264)
Q Consensus 82 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~ 161 (264)
. +.......-.+|.+.|.++.++. +-..|.|++.|+.+.+|+..... .+.+|
T Consensus 89 ~-g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~------------~~~~~-------------- 140 (541)
T KOG4547|consen 89 G-GEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKV------------IIRIW-------------- 140 (541)
T ss_pred C-CeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccce------------eeeee--------------
Confidence 4 33322222247999999998875 44578899999999999987543 12333
Q ss_pred eccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--ecCceEEEEEcCC-----CCEE-EEeeCCCeEEEE
Q psy9316 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--TKGENINITWAPN-----GNTI-AVGNKEDLVTFI 233 (264)
Q Consensus 162 ~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~~~~~~~v~~sp~-----g~~l-a~gs~d~~i~~~ 233 (264)
.+.+..+..++.+|+ +.+++++ .+.|++||+++++....+ +.+.+..+.|.-+ |.++ .+...+..+.+|
T Consensus 141 ~~~~~~~~sl~is~D-~~~l~~a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 141 KEQKPLVSSLCISPD-GKILLTA--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred ccCCCccceEEEcCC-CCEEEec--cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 223345677888886 5676654 679999999999864333 3456777777665 6655 555677788999
Q ss_pred Eccc
Q psy9316 234 DVVK 237 (264)
Q Consensus 234 d~~~ 237 (264)
-+++
T Consensus 218 ~v~~ 221 (541)
T KOG4547|consen 218 VVEK 221 (541)
T ss_pred EEEc
Confidence 8775
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.5e-06 Score=83.02 Aligned_cols=121 Identities=17% Similarity=0.279 Sum_probs=93.9
Q ss_pred EEeecCceEEecccc-ccccccccCCCCEEEEEECCCCCeEEEEE---CCCcEEEEEeccCCCCcccEEEecccccEEeE
Q psy9316 27 LVCKIDDYVKHFNTH-NDIKEYQAHGSKVHSVAWSCDGRRLASGS---FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 102 (264)
Q Consensus 27 ~~~~~d~~~~~~~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~s---~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i 102 (264)
.+.-.||.+..|-.. +.+...+-|+...++..|- +..+++++ .++.+.+||...++... .+..+|.+.++++
T Consensus 2267 ~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi--~s~~~tag~s~d~~n~~lwDtl~~~~~s--~v~~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFI--GSLLATAGRSSDNRNVCLWDTLLPPMNS--LVHTCHDGGATVL 2342 (2439)
T ss_pred eeeccCCceeecccCCcceeccccCCccccceeee--ehhhhccccCCCCCcccchhcccCcccc--eeeeecCCCceEE
Confidence 345678888888654 4556677888888888886 36777764 57899999987654333 3457899999999
Q ss_pred EEecCCCCeEEEEeCCCcEEEEECCCCC---------cceEEEeecCCCcEEEEEeccC
Q psy9316 103 CWHATNPDLLSTASGDKTVRIWDARTQK---------SQIMLASGSFDKSVAIFALDKK 152 (264)
Q Consensus 103 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~---------~~~~~~~~~~d~~i~i~~~~~~ 152 (264)
++-|.. +++++|+++|.|++||++..+ ....+++|+..|.|+||+++.-
T Consensus 2343 ~~~P~~-qllisggr~G~v~l~D~rqrql~h~~~~~~~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2343 AYAPKH-QLLISGGRKGEVCLFDIRQRQLRHTFQALDTREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred EEcCcc-eEEEecCCcCcEEEeehHHHHHHHHhhhhhhhheeeccCcccceEEEEcccc
Confidence 999954 789999999999999998643 2347899999999999998653
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-05 Score=73.90 Aligned_cols=174 Identities=20% Similarity=0.384 Sum_probs=117.8
Q ss_pred CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccc--cEEeEEEecCC--CCeEEEEeCCCcEEEEEC
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG--SVDQLCWHATN--PDLLSTASGDKTVRIWDA 126 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~--~v~~i~~~~~~--~~~l~s~s~dg~i~vwd~ 126 (264)
.+++.++..+|.|+-|+.++.-| +.+-|++.+..... +--|.. .|-+..|+++. +..+++.+. -.-.+|++
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr---~l~h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnl 98 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR---WLHHITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNL 98 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCce---eeeccCcchhcceecccCCCCceeEEecCc-chhhhhhh
Confidence 45677888999999999998877 44456665443322 222332 26667787643 345555443 33345665
Q ss_pred CCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee-
Q psy9316 127 RTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT- 205 (264)
Q Consensus 127 ~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~- 205 (264)
... .+.. -++.+.+|...|..+-|+|..++++++++-|-.+..||+++-...+...
T Consensus 99 A~s----------s~~a-------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~ 155 (1081)
T KOG0309|consen 99 AKS----------SSNA-------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS 155 (1081)
T ss_pred hcC----------Cccc-------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee
Confidence 321 1111 2234578999999999999999999999999999999999876544332
Q ss_pred --cCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceee
Q psy9316 206 --KGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMET 255 (264)
Q Consensus 206 --~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~ 255 (264)
......|+|+-....+.+.+..+.|++||++.+..+. -+.+||+.-+
T Consensus 156 ~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl---~s~K~~vs~v 204 (1081)
T KOG0309|consen 156 SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPL---CSLKGHVSSV 204 (1081)
T ss_pred cccccCceeeecccCcchhhhccCCceEEEeccCCCcce---EEecccceee
Confidence 3445679999877777777888899999999876653 2445665544
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.001 Score=66.37 Aligned_cols=168 Identities=13% Similarity=0.194 Sum_probs=104.4
Q ss_pred EEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEec-----------------ccccEEeEEEecCCCCeEEEE
Q psy9316 54 VHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRG-----------------HTGSVDQLCWHATNPDLLSTA 115 (264)
Q Consensus 54 V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~-----------------h~~~v~~i~~~~~~~~~l~s~ 115 (264)
...++++++++.|+.+. .++.|+++++... .. ..+.+ .-....+++++|.++.++++.
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~-~V---~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNE-TV---RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCC-EE---EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 57889999888766654 4567888886431 11 11100 011235788998666777788
Q ss_pred eCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeC
Q psy9316 116 SGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 195 (264)
Q Consensus 116 s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~ 195 (264)
+.++.|++||..++... ...+ ++... ...+.... ......-..|+++|++..++++.+.++.|++||+
T Consensus 702 ~~~~~I~v~d~~~g~v~--~~~G--~G~~~----~~~g~~~~----~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~ 769 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTR--VFSG--DGYER----NLNGSSGT----STSFAQPSGISLSPDLKELYIADSESSSIRALDL 769 (1057)
T ss_pred CCCCeEEEEECCCCeEE--EEec--CCccc----cCCCCccc----cccccCccEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence 88999999998765322 1111 11100 00000000 0011233568888876667888888999999999
Q ss_pred CCCcceeEee-----------------------cCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 196 RTQKSQIIAT-----------------------KGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 196 ~t~~~~~~~~-----------------------~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.++....... ...+..++++++|+.+++-+.++.|++||..+
T Consensus 770 ~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 770 KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC
Confidence 8754321110 11345789999999999999999999999764
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00044 Score=62.31 Aligned_cols=143 Identities=12% Similarity=0.159 Sum_probs=81.6
Q ss_pred EecccccEEeEEEecCCCCeEEEEeCC--CcEEEEECCCCCcce-------------------EEEeecCCCc--EEEEE
Q psy9316 92 YRGHTGSVDQLCWHATNPDLLSTASGD--KTVRIWDARTQKSQI-------------------MLASGSFDKS--VAIFA 148 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~-------------------~~~~~~~d~~--i~i~~ 148 (264)
+..+...+....|+|++..++.+...+ ..|.+||+.+++... ++.+.+.++. |.+++
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 335667788999999775444443333 358889997653211 1222233333 33334
Q ss_pred eccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCC--cEEEEeCCCCcceeEeecC-ceEEEEEcCCCCEEEEee
Q psy9316 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK--TVRIWDARTQKSQIIATKG-ENINITWAPNGNTIAVGN 225 (264)
Q Consensus 149 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg--~i~iwD~~t~~~~~~~~~~-~~~~v~~sp~g~~la~gs 225 (264)
+... .. ..+..+........|+|++..++.+...+| .|+++|+.+++.......+ .....+|+|+|++++..+
T Consensus 274 ~~~~-~~---~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 274 LASR-QL---SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred CCCC-Ce---EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEE
Confidence 3321 11 112233334556789987665555544444 5777788777643332222 234578999999998877
Q ss_pred CCC---eEEEEEcccC
Q psy9316 226 KED---LVTFIDVVKS 238 (264)
Q Consensus 226 ~d~---~i~~~d~~~~ 238 (264)
.++ .|.++|+..+
T Consensus 350 ~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 350 RQDGNFHVAAQDLQRG 365 (430)
T ss_pred ccCCceEEEEEECCCC
Confidence 543 4788887653
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0011 Score=58.08 Aligned_cols=184 Identities=16% Similarity=0.185 Sum_probs=108.9
Q ss_pred CCEEEEEECCCCCeEEEEEC----CCcEEEEEeccC-CCCcccEEEecccccEEeEEEecCCCCeEEEEe-CCCcEEEEE
Q psy9316 52 SKVHSVAWSCDGRRLASGSF----DKSVAIFALDKK-GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS-GDKTVRIWD 125 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s~----dg~i~v~~~~~~-~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s-~dg~i~vwd 125 (264)
.....|+++|++++|++... ++.|..|.++.. +.+...............++.+|++ ++++++. .+|.+.+++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g-~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDG-RFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTS-SEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCC-CEEEEEEccCCeEEEEE
Confidence 45677889999999999876 468999998765 3332222222122334567788865 5555555 599999999
Q ss_pred CCCCC-cc---------------------------------eEEEeecCCCcEEEEEeccCC-CccceEEEecc-cccee
Q psy9316 126 ARTQK-SQ---------------------------------IMLASGSFDKSVAIFALDKKG-DLNKEVVYRGH-TGSVD 169 (264)
Q Consensus 126 ~~~~~-~~---------------------------------~~~~~~~~d~~i~i~~~~~~~-~~~~~~~~~~h-~~~i~ 169 (264)
++... .. .++++......|.+|+++... .+......... -..=.
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 87521 10 012222223346666665433 12221111111 12345
Q ss_pred eEEEcCCCCCEEEEEeCCCcEEEEeCC--CCcceeE---e-ec----C--ceEEEEEcCCCCEEEEe-eCCCeEEEEEcc
Q psy9316 170 QLCWHATNPDLLSTASGDKTVRIWDAR--TQKSQII---A-TK----G--ENINITWAPNGNTIAVG-NKEDLVTFIDVV 236 (264)
Q Consensus 170 ~i~~~~~~~~~i~s~~~dg~i~iwD~~--t~~~~~~---~-~~----~--~~~~v~~sp~g~~la~g-s~d~~i~~~d~~ 236 (264)
.+.|+|++..+.+..-.+++|.++++. ++..... . .+ + ....+.++|||++|.++ ..++.|.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 689999766666777789999999988 3322111 1 10 1 35679999999998665 467889999984
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.9e-05 Score=64.51 Aligned_cols=83 Identities=17% Similarity=0.298 Sum_probs=66.9
Q ss_pred ccccccCCCCEEEEEECCCCC-eEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEE
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGR-RLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~-~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~ 122 (264)
...+.+|...|.+++|+|..+ ++..++.+..|++.|+....... .+..+ ..+.+++|.-++.+++..|-..|.|.
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 334557788999999999777 78889999999999987643322 24556 77999999988888998888999999
Q ss_pred EEECCCCC
Q psy9316 123 IWDARTQK 130 (264)
Q Consensus 123 vwd~~~~~ 130 (264)
+||++..+
T Consensus 262 vyD~R~~~ 269 (463)
T KOG1645|consen 262 VYDMRQPE 269 (463)
T ss_pred EEEccCCC
Confidence 99998743
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.2e-05 Score=70.02 Aligned_cols=160 Identities=18% Similarity=0.249 Sum_probs=105.4
Q ss_pred CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
.+.|.-++. +++++.+|...|+|.+-|.+. .+....+.+|.+.+.++.. .+++|++++..+...-.
T Consensus 177 a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s---~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l------ 242 (1118)
T KOG1275|consen 177 ASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS---FETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNL------ 242 (1118)
T ss_pred CCceEEEEe--cCcEEEeecccceEEeecCCc---Cceeeeeeccccceeeeec---cCCeEEEeecccccccc------
Confidence 334666654 589999999999999998754 3344568899999988765 34788888865432110
Q ss_pred cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEe---CCCCccee-Eee-
Q psy9316 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD---ARTQKSQI-IAT- 205 (264)
Q Consensus 131 ~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD---~~t~~~~~-~~~- 205 (264)
..|.-+++||+++-..+.+.. + +.++ ..+.|+|.-...++.+++.|.+.+-| +.+..... ...
T Consensus 243 --------~~D~FvkVYDLRmmral~PI~-~--~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p 310 (1118)
T KOG1275|consen 243 --------AMDPFVKVYDLRMMRALSPIQ-F--PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP 310 (1118)
T ss_pred --------cccchhhhhhhhhhhccCCcc-c--ccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEcc
Confidence 023445555555432222210 1 1112 34677787667788889999999999 44332211 222
Q ss_pred cC-ceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 206 KG-ENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 206 ~~-~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.+ .+..+++|++|+.||.|..+|.|.+|--+
T Consensus 311 ~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 311 NGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 23 36789999999999999999999999833
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.3e-05 Score=69.51 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=59.6
Q ss_pred ccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 163 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 163 ~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
...+.+.+.+++|. .+.++.||.||+|.+||...+........-.+.-++|+|+|-.+++|+..|.+.+||+--
T Consensus 257 pL~s~v~~ca~sp~-E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPS-EDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcc-cceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 45567888899985 467778999999999999887544333333467799999999999999999999999653
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.9e-06 Score=77.84 Aligned_cols=182 Identities=16% Similarity=0.243 Sum_probs=120.1
Q ss_pred ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCC-c
Q psy9316 42 NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK-T 120 (264)
Q Consensus 42 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg-~ 120 (264)
...++|..|...-+|++|+-+.+.|+.|+..|.|++|++.... . +..+.+|.+.|+.+.-+.++...+.+++... .
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-~--e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-M--EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-c--cccccccccccccccccCCcceeeeeccccCch
Confidence 4466788899999999999999999999999999999987532 2 2346789999998876665655555444443 5
Q ss_pred EEEEECCCCCcc----------------eEEEeecCCCcEEEEEeccCCCccceEEE-eccccceeeEEEcCCCCCEEEE
Q psy9316 121 VRIWDARTQKSQ----------------IMLASGSFDKSVAIFALDKKGDLNKEVVY-RGHTGSVDQLCWHATNPDLLST 183 (264)
Q Consensus 121 i~vwd~~~~~~~----------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~-~~h~~~i~~i~~~~~~~~~i~s 183 (264)
.-+|++.+-... ..-+.|.......+||..++..+...+.. .+....-+...|+|.+ .+|+
T Consensus 1169 saLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D-~LIl- 1246 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD-TLIL- 1246 (1516)
T ss_pred HHHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc-ceEe-
Confidence 678988652110 01234445556788998776554432211 1111223667888865 4543
Q ss_pred EeCCCcEEEEeCCCCcceeEeecCc-eEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 184 ASGDKTVRIWDARTQKSQIIATKGE-NINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 184 ~~~dg~i~iwD~~t~~~~~~~~~~~-~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.||. +||.+..+....+..-. ...=.|+|+|+.++.-+ .|||.++
T Consensus 1247 --ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1247 --NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred --eCce--eeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHH
Confidence 4664 79999875322221111 12346999999999988 7999886
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.9e-05 Score=67.91 Aligned_cols=201 Identities=12% Similarity=0.247 Sum_probs=121.4
Q ss_pred eEEEeecCceEEeccccc-----------------cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCc
Q psy9316 25 FHLVCKIDDYVKHFNTHN-----------------DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN 87 (264)
Q Consensus 25 ~~~~~~~d~~~~~~~~~~-----------------~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~ 87 (264)
++..++.||.+|...... .-.++.||++.|.-+.|+.+.+.|-++..+|.|.+|-+-+..-.+
T Consensus 28 yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~E 107 (1189)
T KOG2041|consen 28 YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCE 107 (1189)
T ss_pred eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHH
Confidence 445567788887753211 013678999999999999999999999999999999876433222
Q ss_pred ccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC--------cc----------eEEEeecCCCcEEEEEe
Q psy9316 88 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--------SQ----------IMLASGSFDKSVAIFAL 149 (264)
Q Consensus 88 ~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~--------~~----------~~~~~~~~d~~i~i~~~ 149 (264)
.. +-.-..+.|.+++|..++ ..+...-.||.|.+=.++... .. ..+..+-.+|.+.+||.
T Consensus 108 EM-iNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydn 185 (1189)
T KOG2041|consen 108 EM-INNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDN 185 (1189)
T ss_pred HH-hhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecc
Confidence 21 111234568899998755 445556667766443222110 00 01122334567778775
Q ss_pred ccCCC--ccce--E----EEeccccceeeEEEcC-------CCCCEEEEEeCCCcEEEEeCCCCcc-eeEeecCceEEEE
Q psy9316 150 DKKGD--LNKE--V----VYRGHTGSVDQLCWHA-------TNPDLLSTASGDKTVRIWDARTQKS-QIIATKGENINIT 213 (264)
Q Consensus 150 ~~~~~--~~~~--~----~~~~h~~~i~~i~~~~-------~~~~~i~s~~~dg~i~iwD~~t~~~-~~~~~~~~~~~v~ 213 (264)
.-+-. +... . .+......|..+.|.. .+.-.++.+-..|.+.|.--++... .+......+..+.
T Consensus 186 qgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgak 265 (1189)
T KOG2041|consen 186 QGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAK 265 (1189)
T ss_pred cccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecce
Confidence 32110 0000 0 0111222355666652 2334678888999999976655543 3333445678899
Q ss_pred EcCCCCEEEEeeCC
Q psy9316 214 WAPNGNTIAVGNKE 227 (264)
Q Consensus 214 ~sp~g~~la~gs~d 227 (264)
|+|+|..||+++.+
T Consensus 266 Wnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 266 WNHNGAVLAVCGND 279 (1189)
T ss_pred ecCCCcEEEEccCc
Confidence 99999999998755
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.5e-05 Score=64.47 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=91.1
Q ss_pred EEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEE
Q psy9316 67 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAI 146 (264)
Q Consensus 67 ~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i 146 (264)
++.|.+..+-+-++++. . .+ .+. -.+.|.++.|...+ .++..|++.|.|..+|++.+. + |.......+
T Consensus 228 fs~G~sqqv~L~nvetg-~-~q--sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rn-q-----G~~~~a~rl 295 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG-H-QQ--SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRN-Q-----GNGWCAQRL 295 (425)
T ss_pred ecccccceeEEEEeecc-c-cc--ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecc-c-----CCCcceEEE
Confidence 44455566666666542 1 11 122 45668888887534 688899999999999998641 1 111111111
Q ss_pred EEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEEE-----EcCCCC
Q psy9316 147 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENINIT-----WAPNGN 219 (264)
Q Consensus 147 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~-----~sp~g~ 219 (264)
-|.+.|+++..-..+...+.+.+.+|.|++||.+.-++ .+....++++..+ ..|...
T Consensus 296 ----------------yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg 359 (425)
T KOG2695|consen 296 ----------------YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG 359 (425)
T ss_pred ----------------EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc
Confidence 25566666654432344666678999999999997654 3445566665544 345566
Q ss_pred EEEEeeCCCeEEEEEccc
Q psy9316 220 TIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 220 ~la~gs~d~~i~~~d~~~ 237 (264)
.++++++|=..+||-+..
T Consensus 360 ~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 360 SIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred eEEEccCeeEEEEEeccc
Confidence 777789999999999874
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0035 Score=55.51 Aligned_cols=147 Identities=12% Similarity=0.202 Sum_probs=102.6
Q ss_pred cccCCCCEEEEEECCCCCeEEEEECCC-cEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEE
Q psy9316 47 YQAHGSKVHSVAWSCDGRRLASGSFDK-SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125 (264)
Q Consensus 47 ~~~h~~~V~~l~~s~~g~~l~s~s~dg-~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd 125 (264)
.-+|.+.|.-..+.-+++-++.|..|| .+-+|+.... . ...+...-+.|..+..++++ ..++.+.....+-++|
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-e---~kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vid 429 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-E---VKRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVID 429 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-e---EEEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEE
Confidence 347888899999988888889999999 8999987542 1 23355666789999988855 5677777777888888
Q ss_pred CCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCC----CcEEEEeCCCCcce
Q psy9316 126 ARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD----KTVRIWDARTQKSQ 201 (264)
Q Consensus 126 ~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~d----g~i~iwD~~t~~~~ 201 (264)
++++... +.+ +.-.+-|..+.|+|+ +.+||-+--+ ..|+++|+.+++..
T Consensus 430 idngnv~-------------~id-------------kS~~~lItdf~~~~n-sr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 430 IDNGNVR-------------LID-------------KSEYGLITDFDWHPN-SRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred ecCCCee-------------Eec-------------ccccceeEEEEEcCC-ceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 8876432 111 111245778888874 4666655444 47899999997753
Q ss_pred eEe-ecCceEEEEEcCCCCEEEEee
Q psy9316 202 IIA-TKGENINITWAPNGNTIAVGN 225 (264)
Q Consensus 202 ~~~-~~~~~~~v~~sp~g~~la~gs 225 (264)
... ..+.-.+-+|.|+|++|..=|
T Consensus 483 ~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 483 DVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecCCcccccCcccCCCCcEEEEEe
Confidence 332 334556778999999885543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0023 Score=56.54 Aligned_cols=141 Identities=17% Similarity=0.100 Sum_probs=83.1
Q ss_pred EEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEE
Q psy9316 67 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAI 146 (264)
Q Consensus 67 ~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i 146 (264)
++-..++.+.+.|..+... ...+......-..+.++|+ ++++.+.++||.|.++|+.+.+....+..|
T Consensus 10 V~~~~~~~v~viD~~t~~~---~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~~~~~~v~~i~~G-------- 77 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKV---VARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDLATGKVVATIKVG-------- 77 (369)
T ss_dssp EEEGGGTEEEEEETTT-SE---EEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-S--------
T ss_pred EEecCCCEEEEEECCCCeE---EEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEECCcccEEEEEecC--------
Confidence 3445678999998754221 1233332222233556764 467777899999999999987643322221
Q ss_pred EEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee----c-----CceEEEEEcCC
Q psy9316 147 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT----K-----GENINITWAPN 217 (264)
Q Consensus 147 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~----~-----~~~~~v~~sp~ 217 (264)
..-..+++++++..++++....+.+.++|.++.+...... . .++..+.-+|.
T Consensus 78 -------------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~ 138 (369)
T PF02239_consen 78 -------------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG 138 (369)
T ss_dssp -------------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS
T ss_pred -------------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCC
Confidence 1234577888766566666789999999999987532221 1 23556777898
Q ss_pred CCEEEEeeCC-CeEEEEEcccC
Q psy9316 218 GNTIAVGNKE-DLVTFIDVVKS 238 (264)
Q Consensus 218 g~~la~gs~d-~~i~~~d~~~~ 238 (264)
+..+++.-.| +.|-+.|..+.
T Consensus 139 ~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 139 RPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp SSEEEEEETTTTEEEEEETTTS
T ss_pred CCEEEEEEccCCeEEEEEeccc
Confidence 8866665554 77877786543
|
... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.013 Score=50.15 Aligned_cols=184 Identities=18% Similarity=0.302 Sum_probs=116.1
Q ss_pred CCEEEEEECCCCCeEEEEEC-CCcEEEEEeccCCCCcccEEEeccccc----------EEeEEEecCCCCeEEEEe-CCC
Q psy9316 52 SKVHSVAWSCDGRRLASGSF-DKSVAIFALDKKGDLNKEVVYRGHTGS----------VDQLCWHATNPDLLSTAS-GDK 119 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s~-dg~i~v~~~~~~~~~~~~~~~~~h~~~----------v~~i~~~~~~~~~l~s~s-~dg 119 (264)
.+-..++++++|++|+++.. -|.|.++.+...+.+........|.+. +....+.|++ +++++.. .--
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~D 167 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTD 167 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCc
Confidence 34488999999999999986 468999998877665544333445554 7777788865 5555544 345
Q ss_pred cEEEEECCCCCcc-----------------------eEEEeecCCCcEEEEEeccC-CCccceEEE----ec--ccccee
Q psy9316 120 TVRIWDARTQKSQ-----------------------IMLASGSFDKSVAIFALDKK-GDLNKEVVY----RG--HTGSVD 169 (264)
Q Consensus 120 ~i~vwd~~~~~~~-----------------------~~~~~~~~d~~i~i~~~~~~-~~~~~~~~~----~~--h~~~i~ 169 (264)
.|.+|++..++.. ...++...+++|.+|..+.. +.+...... .. -....-
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a 247 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA 247 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence 7889998754321 12345566788888887653 322221111 11 123566
Q ss_pred eEEEcCCCCCEEEEEeCCCcEEEEeCC--CCcceeEe---ecCc-eEEEEEcCCCCEEEEee-CCCeEEEEEcc
Q psy9316 170 QLCWHATNPDLLSTASGDKTVRIWDAR--TQKSQIIA---TKGE-NINITWAPNGNTIAVGN-KEDLVTFIDVV 236 (264)
Q Consensus 170 ~i~~~~~~~~~i~s~~~dg~i~iwD~~--t~~~~~~~---~~~~-~~~v~~sp~g~~la~gs-~d~~i~~~d~~ 236 (264)
+|..++++..+.+|--...+|-+|-+. +++..+.. ..+. +..+.|+|.|++|+++. +++.+.+|-..
T Consensus 248 aIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 248 AIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred EEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 788888766556655556678887554 33332221 1232 56789999999996664 45568888754
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00089 Score=62.34 Aligned_cols=169 Identities=19% Similarity=0.257 Sum_probs=106.1
Q ss_pred CCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCC-eEEEEeCCCcEEEEECCC
Q psy9316 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD-LLSTASGDKTVRIWDART 128 (264)
Q Consensus 50 h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~-~l~s~s~dg~i~vwd~~~ 128 (264)
|.+.-.++.|+|.|-+ +.|+ ...|.+.|... ......++.|...|+.+.|.|.... -+.+ .
T Consensus 14 ~~sN~~A~Dw~~~GLi-Aygs-hslV~VVDs~s---~q~iqsie~h~s~V~~VrWap~~~p~~llS-------------~ 75 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSGLI-AYGS-HSLVSVVDSRS---LQLIQSIELHQSAVTSVRWAPAPSPRDLLS-------------P 75 (1062)
T ss_pred CcccccccccCccceE-EEec-CceEEEEehhh---hhhhhccccCccceeEEEeccCCCchhccC-------------c
Confidence 3344567889877644 4443 34677776443 2222346678999999999875421 1111 0
Q ss_pred CCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCC---CCCEEEEEeCCCcEEEEeCCCCcceeEee
Q psy9316 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT---NPDLLSTASGDKTVRIWDARTQKSQIIAT 205 (264)
Q Consensus 129 ~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~---~~~~i~s~~~dg~i~iwD~~t~~~~~~~~ 205 (264)
...+..++++...|.|.+||....... .-+..|.+++..++|-+. ..++++....-.++-+||..+++..-...
T Consensus 76 ~~~~lliAsaD~~GrIil~d~~~~s~~---~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 76 SSSQLLIASADISGRIILVDFVLASVI---NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred cccceeEEeccccCcEEEEEehhhhhh---hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 112334555555666666665432221 123456778999999874 23678888999999999999998633322
Q ss_pred -cCce-EEEEEcC-CCCEEEEeeCCCeEEEEEcccCC
Q psy9316 206 -KGEN-INITWAP-NGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 206 -~~~~-~~v~~sp-~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
-..+ .++.+.| |-+++.+-+..|++.+.+.-...
T Consensus 153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s 189 (1062)
T KOG1912|consen 153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS 189 (1062)
T ss_pred cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCC
Confidence 2233 4588888 56788888889999988865433
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.71 E-value=7.1e-05 Score=41.50 Aligned_cols=36 Identities=39% Similarity=0.550 Sum_probs=32.0
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEE
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFA 79 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~ 79 (264)
+..+..|...|.++.|+++++.+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455668889999999999999999999999999984
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=2.3e-05 Score=71.08 Aligned_cols=179 Identities=20% Similarity=0.338 Sum_probs=111.8
Q ss_pred CEEEEEECCC--CCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeC----CCcEEEEEC
Q psy9316 53 KVHSVAWSCD--GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG----DKTVRIWDA 126 (264)
Q Consensus 53 ~V~~l~~s~~--g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~----dg~i~vwd~ 126 (264)
.+.|+++.-+ ...++.|..+|.|.+-.+..+-.. ......+|...+++++|.+-+.+.|+.|=. |-.+.+||+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 5677776653 357888999999999876543222 223455788899999999987777766532 445899999
Q ss_pred CCCC----cc--------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEE
Q psy9316 127 RTQK----SQ--------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 182 (264)
Q Consensus 127 ~~~~----~~--------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~ 182 (264)
.+.- +. .++.+|.....+.++|++....... .-.++.+..+...|..+.+++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~----svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS----SVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh----hhhhhhcccceecCCCCCcee
Confidence 8751 11 1234455555666666653211100 011234555666777777887
Q ss_pred EEeCCCcEEEEe-CCCCcc---eeEe----ecCceEEEEEcCC--CCEEEEeeCCCeEEEEEccc
Q psy9316 183 TASGDKTVRIWD-ARTQKS---QIIA----TKGENINITWAPN--GNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 183 s~~~dg~i~iwD-~~t~~~---~~~~----~~~~~~~v~~sp~--g~~la~gs~d~~i~~~d~~~ 237 (264)
+ ..||.|-+|| .++-+. .... .+.....++|.|- |.....--+.++|+++|.+.
T Consensus 213 s-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 213 S-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred c-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 6 4599999999 444331 1111 1234678999984 44445556678899999763
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0089 Score=51.08 Aligned_cols=175 Identities=16% Similarity=0.148 Sum_probs=99.9
Q ss_pred cCCCCEEEEEECCCCCeEEEEEC---CCcEEEEEeccC-CCCcccEEEecccccEEeEEEecCCCCeEEEEeC-CCcEEE
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSF---DKSVAIFALDKK-GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG-DKTVRI 123 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~---dg~i~v~~~~~~-~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~-dg~i~v 123 (264)
.+.+.++-|+|+|++++|.++-. +|.|..|.++.. +.+...-.......+-..++.++++ +++++++. -|.|.+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g-~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDG-RFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCC-CEEEEEEccCceEEE
Confidence 55678899999999999999754 578999988753 3322110001111222566777644 56666665 677888
Q ss_pred EECCCCC-cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee
Q psy9316 124 WDARTQK-SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI 202 (264)
Q Consensus 124 wd~~~~~-~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~ 202 (264)
+-++... ....+ .+..-...+.. + ++-+..+....+.|++..+++..=.--.|.+|++..+....
T Consensus 116 ~p~~~dG~l~~~v---------~~~~h~g~~p~--~---rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~ 181 (346)
T COG2706 116 YPLQADGSLQPVV---------QVVKHTGSGPH--E---RQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTP 181 (346)
T ss_pred EEcccCCccccce---------eeeecCCCCCC--c---cccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccc
Confidence 8775421 11110 01000000000 0 11112255667778654444433334588999998655321
Q ss_pred ----EeecC-ceEEEEEcCCCCEE-EEeeCCCeEEEEEcccC
Q psy9316 203 ----IATKG-ENINITWAPNGNTI-AVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 203 ----~~~~~-~~~~v~~sp~g~~l-a~gs~d~~i~~~d~~~~ 238 (264)
...++ ...-+.|+|++++. ++..-++.|.+|.....
T Consensus 182 ~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 182 ADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred ccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 11222 34559999999987 55677999999997753
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00039 Score=62.78 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=60.2
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCC
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~ 128 (264)
...+.|.|.+++|+.+.++.|+.||+|.+||..... ..+....-..+.++|||++ .++++|+..|.+.+||+--
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-----t~~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV-----TLLAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe-----eeeeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeec
Confidence 567789999999999999999999999999975421 1122234457889999965 7888999999999999864
Q ss_pred CC
Q psy9316 129 QK 130 (264)
Q Consensus 129 ~~ 130 (264)
..
T Consensus 331 sp 332 (545)
T PF11768_consen 331 SP 332 (545)
T ss_pred Cc
Confidence 43
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00021 Score=64.05 Aligned_cols=150 Identities=21% Similarity=0.235 Sum_probs=95.0
Q ss_pred EEEeecCceEEeccccc---------cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEeccc
Q psy9316 26 HLVCKIDDYVKHFNTHN---------DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96 (264)
Q Consensus 26 ~~~~~~d~~~~~~~~~~---------~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~ 96 (264)
.++++.|+++|.|.... +--+|+.|+.+|+++.|-.+-+++++ -||-|.+||--......+.. .....
T Consensus 750 FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~-dapk~ 826 (1034)
T KOG4190|consen 750 FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQME-DAPKE 826 (1034)
T ss_pred eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhh-cCccc
Confidence 46789999999996531 23368899999999999988888865 48999999854321111111 11122
Q ss_pred ccEEeEEEecC-CCCeEEEE-eCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEc
Q psy9316 97 GSVDQLCWHAT-NPDLLSTA-SGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 174 (264)
Q Consensus 97 ~~v~~i~~~~~-~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~ 174 (264)
+.+.-+...+. +..+++.| +...+|+++|.++.+-..-+.... -.+..+.+.+++..
T Consensus 827 ~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn---------------------a~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 827 GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN---------------------APGPNALTRAIAVA 885 (1034)
T ss_pred CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc---------------------CCCCchheeEEEec
Confidence 22222222232 44555555 558899999998765332211110 01223456677766
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCcc
Q psy9316 175 ATNPDLLSTASGDKTVRIWDARTQKS 200 (264)
Q Consensus 175 ~~~~~~i~s~~~dg~i~iwD~~t~~~ 200 (264)
+. ++.++.+=..|.|-+.|.+++..
T Consensus 886 ~~-GN~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 886 DK-GNKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred cC-cchhhHHhcCCcEEEEecCCCce
Confidence 54 56778888899999999999874
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0019 Score=60.27 Aligned_cols=174 Identities=17% Similarity=0.243 Sum_probs=104.0
Q ss_pred CeeEEEeecCceEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeE
Q psy9316 23 SQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 102 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i 102 (264)
..+...+..+|.+..+.-....++...|... +.+|++++++|.||+|.|..+..+... ..+ ....++..+
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~---~~~-df~rpiksi 118 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI---TQY-DFKRPIKSI 118 (846)
T ss_pred cceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccc---eeE-ecCCcceeE
Confidence 4455566677777766544333444455433 568999999999999999876543221 122 234668888
Q ss_pred EEecC----CCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCC
Q psy9316 103 CWHAT----NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 178 (264)
Q Consensus 103 ~~~~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~ 178 (264)
+++|+ ....+++|+..| +.++.-+=-..... .....-.++|.+++|. +
T Consensus 119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~------------------------v~l~~~eG~I~~i~W~---g 170 (846)
T KOG2066|consen 119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS------------------------VVLSEGEGPIHSIKWR---G 170 (846)
T ss_pred EeccchhhhhhhheeecCcce-EEEehhhhhcCccc------------------------eeeecCccceEEEEec---C
Confidence 88885 235777888877 66643210000000 0122334689999995 4
Q ss_pred CEEEEEeCCCcEEEEeCCCCcceeEee-c-C------ceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 179 DLLSTASGDKTVRIWDARTQKSQIIAT-K-G------ENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 179 ~~i~s~~~dg~i~iwD~~t~~~~~~~~-~-~------~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.+||=++ |--|+|||..+++...... + . ....+.|.++. .|+.|= ...|.+.-+++
T Consensus 171 ~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW-~d~v~i~~I~~ 234 (846)
T KOG2066|consen 171 NLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGW-GDSVKICSIKK 234 (846)
T ss_pred cEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEec-CCeEEEEEEec
Confidence 6777655 5568999999877432221 1 1 12357888644 455564 34557777663
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.028 Score=55.52 Aligned_cols=174 Identities=14% Similarity=0.250 Sum_probs=89.4
Q ss_pred EEEEECCCCCeEEEEEC---CCcEEEEEeccCCCCcccEEEe--cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC
Q psy9316 55 HSVAWSCDGRRLASGSF---DKSVAIFALDKKGDLNKEVVYR--GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 129 (264)
Q Consensus 55 ~~l~~s~~g~~l~s~s~---dg~i~v~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~ 129 (264)
.+|+|.|.|++||+.-. ...|.+|+ .+|-.-..+.++ .....|..+.|++++ .+|+..-.|. |.+|-..+-
T Consensus 260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfE--rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 260 GALSWRPSGNLIASSQRLPDRHDVVFFE--RNGLRHGEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCccCCCCCCEEEEEEEcCCCcEEEEEe--cCCcEeeeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCC
Confidence 47889999999998754 34566664 334222223333 345679999999854 6776655444 999987653
Q ss_pred Cc--ceEEEeecCCC-cEEEEEeccCCCccceEEEecccccee--e----EEEc----CCCCCEEEEEeCCCcEEEEeCC
Q psy9316 130 KS--QIMLASGSFDK-SVAIFALDKKGDLNKEVVYRGHTGSVD--Q----LCWH----ATNPDLLSTASGDKTVRIWDAR 196 (264)
Q Consensus 130 ~~--~~~~~~~~~d~-~i~i~~~~~~~~~~~~~~~~~h~~~i~--~----i~~~----~~~~~~i~s~~~dg~i~iwD~~ 196 (264)
.= ...+....... ..-.|+.. .......... .+.+. . +..+ |.+...++.. ....+++-.++
T Consensus 336 HWYLKqei~~~~~~~~~~~~Wdpe--~p~~L~v~t~--~g~~~~~~~~~~v~~s~~~~~~D~g~vaVI-DG~~lllTpf~ 410 (928)
T PF04762_consen 336 HWYLKQEIRFSSSESVNFVKWDPE--KPLRLHVLTS--NGQYEIYDFAWDVSRSPGSSPNDNGTVAVI-DGNKLLLTPFR 410 (928)
T ss_pred EEEEEEEEEccCCCCCCceEECCC--CCCEEEEEec--CCcEEEEEEEEEEEecCCCCccCceEEEEE-eCCeEEEeccc
Confidence 20 00111111111 11223321 1111110000 01111 1 1111 1112222222 23345555444
Q ss_pred CCcc------eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 197 TQKS------QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 197 t~~~------~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.... .....+..+..++|++++..+|+-..|+.+.+|....
T Consensus 411 ~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 411 RAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred ccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 3321 1122345678899999999899999999999998554
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.036 Score=54.71 Aligned_cols=184 Identities=14% Similarity=0.242 Sum_probs=106.0
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCC-CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEEC-
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG-DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA- 126 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~-~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~- 126 (264)
.....|..|.|++|+..|+.-..|. |.+|....-- ..+++..+. ....+..+.|+|..+..|...+.+|.+..+++
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 3456899999999999999977555 9999764321 122222222 22334558999988887877787777765443
Q ss_pred ---CCCCcc----eEEEeecCCCcEEEEEeccCCCccc-eEE-EeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q psy9316 127 ---RTQKSQ----IMLASGSFDKSVAIFALDKKGDLNK-EVV-YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197 (264)
Q Consensus 127 ---~~~~~~----~~~~~~~~d~~i~i~~~~~~~~~~~-~~~-~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t 197 (264)
...... ..++..=.+..+.+-.++... ..+ ... .-.-..+|..++|++.+. .++.-..||.+.+|....
T Consensus 380 ~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~-VPPPMs~~~l~~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 380 WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAV-VPPPMSSYELELPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEEEecCCCCccCceEEEEEeCCeEEEecccccC-CCchHhceEEcCCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecC
Confidence 222111 111111112233443333211 111 100 012346899999998654 366778899999998543
Q ss_pred Ccce----------eEe----------ecCceEEEEEcCCCCEEEEeeCC---CeEEEEEcc
Q psy9316 198 QKSQ----------IIA----------TKGENINITWAPNGNTIAVGNKE---DLVTFIDVV 236 (264)
Q Consensus 198 ~~~~----------~~~----------~~~~~~~v~~sp~g~~la~gs~d---~~i~~~d~~ 236 (264)
.... ... .......+.|..++..+++...+ ..+.+++..
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 458 KNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDID 519 (928)
T ss_pred CCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEec
Confidence 2210 000 11234568888777777666654 667888764
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.029 Score=50.47 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=75.6
Q ss_pred cEEeEEEecCCCCeEEEEeC---CCcEEEEECCCCCcceE--------EEeecCCCc-----------EEEEEeccCCCc
Q psy9316 98 SVDQLCWHATNPDLLSTASG---DKTVRIWDARTQKSQIM--------LASGSFDKS-----------VAIFALDKKGDL 155 (264)
Q Consensus 98 ~v~~i~~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~--------~~~~~~d~~-----------i~i~~~~~~~~~ 155 (264)
......|+|++..+++..+. +..|.++|+.+++...+ ...-+.||. -.||-++..+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 56778999987654443333 35688889877643221 111122332 223333221111
Q ss_pred cceEEEeccccceeeEEEcCCCCCEEEEEeCCC--cEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCC-----
Q psy9316 156 NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK--TVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKED----- 228 (264)
Q Consensus 156 ~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg--~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~----- 228 (264)
.. .+..+........|+|++..++.+....| .|++.|+.+++.......+. ....|||||++++..+...
T Consensus 269 ~~--~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 269 LT--QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred EE--EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceECCCCCEEEEEEcCCCcccC
Confidence 11 11222222234579997766655554444 57777888776533322222 2358999999998877552
Q ss_pred ----eEEEEEcccC
Q psy9316 229 ----LVTFIDVVKS 238 (264)
Q Consensus 229 ----~i~~~d~~~~ 238 (264)
.|++.|+..+
T Consensus 346 ~~~~~I~v~d~~~g 359 (419)
T PRK04043 346 KNTFNLYLISTNSD 359 (419)
T ss_pred CCCcEEEEEECCCC
Confidence 5788887654
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0029 Score=56.84 Aligned_cols=132 Identities=23% Similarity=0.436 Sum_probs=82.4
Q ss_pred CCCEEEEEECCCCCeEEE--EECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeC---CCcEEEEE
Q psy9316 51 GSKVHSVAWSCDGRRLAS--GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG---DKTVRIWD 125 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s--~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~---dg~i~vwd 125 (264)
.++|+++.|+|+++-++. |-+--.+.+||+. +. .++.--.++=.++-|+|.+ ++++.++- -|.+-+||
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~----~v~df~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GK----PVFDFPEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCC--CC----EeEeCCCCCccceEECCCC-CEEEEeecCCCCCceEEEe
Confidence 689999999999986655 4466789999864 22 2344456666778899866 56655553 46788888
Q ss_pred CCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeC------CCcEEEEeCCCCc
Q psy9316 126 ARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG------DKTVRIWDARTQK 199 (264)
Q Consensus 126 ~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~------dg~i~iwD~~t~~ 199 (264)
+.+.+....+. . ..-.-..|+|++ .+|+|+.. |+.++||+.....
T Consensus 343 v~n~K~i~~~~--------------------------a--~~tt~~eW~PdG-e~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 343 VPNRKLIAKFK--------------------------A--ANTTVFEWSPDG-EYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred ccchhhccccc--------------------------c--CCceEEEEcCCC-cEEEEEeccccEEecCCeEEEEecCce
Confidence 87644321110 0 122336799865 55555543 7999999987654
Q ss_pred ceeEeecCceEEEEEcCCC
Q psy9316 200 SQIIATKGENINITWAPNG 218 (264)
Q Consensus 200 ~~~~~~~~~~~~v~~sp~g 218 (264)
......+.+...+.|-|..
T Consensus 394 l~~~~f~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 394 LHEKMFKSELLQVEWRPFN 412 (566)
T ss_pred eehhhhhHhHhheeeeecC
Confidence 3222222245566776633
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.043 Score=45.61 Aligned_cols=182 Identities=12% Similarity=0.146 Sum_probs=88.3
Q ss_pred cccCCCCEEEEEECCCCCeEEEEEC-CCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEE
Q psy9316 47 YQAHGSKVHSVAWSCDGRRLASGSF-DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125 (264)
Q Consensus 47 ~~~h~~~V~~l~~s~~g~~l~s~s~-dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd 125 (264)
+.+-...+..|+|+|+.+.|++... .+.|. .++..+......-+.+ .+..-.+.+.. ++.++++.-+++.+.+++
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~--els~~G~vlr~i~l~g-~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIY--ELSLDGKVLRRIPLDG-FGDYEGITYLG-NGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEE--EEETT--EEEEEE-SS--SSEEEEEE-S-TTEEEEEETTTTEEEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEE--EEcCCCCEEEEEeCCC-CCCceeEEEEC-CCEEEEEEcCCCcEEEEE
Confidence 3444556999999998877776654 44544 4444454332222333 34567777754 335555554688888887
Q ss_pred CCCCCcc------e------------------------EEEeecCCCcEEEEEecc--CCCccceEEE------eccccc
Q psy9316 126 ARTQKSQ------I------------------------MLASGSFDKSVAIFALDK--KGDLNKEVVY------RGHTGS 167 (264)
Q Consensus 126 ~~~~~~~------~------------------------~~~~~~~d~~i~i~~~~~--~~~~~~~~~~------~~h~~~ 167 (264)
+...... . .+..+.......+|..+. .......... ......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 7332110 0 011122223344554432 1100000000 012234
Q ss_pred eeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecC----------ceEEEEEcCCCCEEEEeeCCCeEEEE
Q psy9316 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKG----------ENINITWAPNGNTIAVGNKEDLVTFI 233 (264)
Q Consensus 168 i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~----------~~~~v~~sp~g~~la~gs~d~~i~~~ 233 (264)
+..+.++|..+.+++-......+-.+|...+......... ....|+|.++|+.+++.- -+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEe
Confidence 6778999988888888889999999996554333332221 356799999997776665 4455554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.019 Score=54.34 Aligned_cols=179 Identities=14% Similarity=0.201 Sum_probs=103.4
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEeccccc-EEeEEEecCCCCeEEEEeCCCc-----EEEEEC
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS-VDQLCWHATNPDLLSTASGDKT-----VRIWDA 126 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~~~~~l~s~s~dg~-----i~vwd~ 126 (264)
.|.| |++.+..++.|+.+|.|.+++-. .....-++++... |..+ |.-.+..+|++.+.|+. +++||+
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s----~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS----FQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc----ceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecc
Confidence 4554 67889999999999998887522 2211235556555 4333 33334467777777654 899998
Q ss_pred CCCC-c---c----------------------------eEEEeecCCCcEEEEEeccCCCc-cceEEEeccccceeeEEE
Q psy9316 127 RTQK-S---Q----------------------------IMLASGSFDKSVAIFALDKKGDL-NKEVVYRGHTGSVDQLCW 173 (264)
Q Consensus 127 ~~~~-~---~----------------------------~~~~~~~~d~~i~i~~~~~~~~~-~~~~~~~~h~~~i~~i~~ 173 (264)
+..+ + + ..++.|-.+|.|..+.-+.-.+. .+......-..+|+.+.+
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 6531 1 0 03566667777777643211110 111111223468999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCcceeE--eecC-ceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 174 HATNPDLLSTASGDKTVRIWDARTQKSQII--ATKG-ENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 174 ~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~--~~~~-~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
..+....+.. ..-..|.+|.+.++..... ...+ ...+.++++.-..+.++. +.++++||.....+
T Consensus 180 ~~d~~s~lFv-~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 180 RSDGKSVLFV-ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGP 247 (933)
T ss_pred ecCCceeEEE-EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcce
Confidence 8655542222 3356899999986663222 2233 344556665433355554 78889999775443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.049 Score=46.36 Aligned_cols=200 Identities=17% Similarity=0.226 Sum_probs=106.5
Q ss_pred cCCCCCceEeecCCCeeEEEeecCceEEecccc---ccccccccCCCCEEEEEECCCCCeEEEEE-------CCCcEEEE
Q psy9316 9 HTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTH---NDIKEYQAHGSKVHSVAWSCDGRRLASGS-------FDKSVAIF 78 (264)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~h~~~V~~l~~s~~g~~l~s~s-------~dg~i~v~ 78 (264)
|.-|||+++++=+..+. .-...|.|-.|+.. ..+.+|..|.-.-..+.+.|||+.|+.+- ..|..++
T Consensus 55 Hg~fs~dG~~LytTEnd--~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL- 131 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTEND--YETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL- 131 (305)
T ss_pred CEEEcCCCCEEEEeccc--cCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-
Confidence 55566776544433211 13456777777665 34556777777778899999998877762 1122222
Q ss_pred EeccCCCCcccEE-Eec---------------ccccEEeEEEecCCCCeEEEEeCCCcEEE---EECCCCCcceEEEeec
Q psy9316 79 ALDKKGDLNKEVV-YRG---------------HTGSVDQLCWHATNPDLLSTASGDKTVRI---WDARTQKSQIMLASGS 139 (264)
Q Consensus 79 ~~~~~~~~~~~~~-~~~---------------h~~~v~~i~~~~~~~~~l~s~s~dg~i~v---wd~~~~~~~~~~~~~~ 139 (264)
+++. +....+ ++. |..++..+++.+ ||.|-+ |.-.......+++.-.
T Consensus 132 Nl~t---M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-----------~G~V~~a~Q~qg~~~~~~PLva~~~ 197 (305)
T PF07433_consen 132 NLDT---MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-----------DGTVAFAMQYQGDPGDAPPLVALHR 197 (305)
T ss_pred Chhh---cCCceEEEecCCCceeeeeecCccccccceeeEEecC-----------CCcEEEEEecCCCCCccCCeEEEEc
Confidence 2221 111111 112 334444444443 333322 3333223333444433
Q ss_pred CCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecCceEEEEEcCCCC
Q psy9316 140 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGN 219 (264)
Q Consensus 140 ~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~ 219 (264)
.++.+........ ....-...+-+|+++++...+.+|+=..|.+.+||..++..........+..++-.+++
T Consensus 198 ~g~~~~~~~~p~~-------~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~- 269 (305)
T PF07433_consen 198 RGGALRLLPAPEE-------QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG- 269 (305)
T ss_pred CCCcceeccCChH-------HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-
Confidence 4444444332110 11233457888999876555666766788999999999986544444455667766666
Q ss_pred EEEEeeCCCeEEEEE
Q psy9316 220 TIAVGNKEDLVTFID 234 (264)
Q Consensus 220 ~la~gs~d~~i~~~d 234 (264)
+++.+..|.+....
T Consensus 270 -f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 270 -FLVSSGQGQLIRLS 283 (305)
T ss_pred -eEEeCCCccEEEcc
Confidence 43444445543333
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.026 Score=53.04 Aligned_cols=191 Identities=18% Similarity=0.236 Sum_probs=110.5
Q ss_pred ccccccccCCCCEEEEEECCCC------------CeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCC-
Q psy9316 42 NDIKEYQAHGSKVHSVAWSCDG------------RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN- 108 (264)
Q Consensus 42 ~~~~~~~~h~~~V~~l~~s~~g------------~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~- 108 (264)
..+..+..|+..|+.+.|.|.. -+|+++.-.|.|.+||+....... -+..|..++.+++|-+..
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccC
Confidence 4567788899999999998632 146667778999999987533221 256788899999997632
Q ss_pred -C-CeEEEEeCCCcEEEEECCCCCcce---------------------EEEeecCCCcEEEEEecc---CCCccceEEE-
Q psy9316 109 -P-DLLSTASGDKTVRIWDARTQKSQI---------------------MLASGSFDKSVAIFALDK---KGDLNKEVVY- 161 (264)
Q Consensus 109 -~-~~l~s~s~dg~i~vwd~~~~~~~~---------------------~~~~~~~d~~i~i~~~~~---~~~~~~~~~~- 161 (264)
. ++++.-..-.++.+|+..+++... ..+.++ .|.+-+.+... .....+.++.
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s-~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGS-KGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEcc-CceEEEEeccCCCCCCCCceeEEEe
Confidence 2 466667778899999988875311 112221 22222221110 0000000000
Q ss_pred ecc----------------c---cce------eeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce-eE-eecCceEEEEE
Q psy9316 162 RGH----------------T---GSV------DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-II-ATKGENINITW 214 (264)
Q Consensus 162 ~~h----------------~---~~i------~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~-~~-~~~~~~~~v~~ 214 (264)
..| + ..+ -.++|+|.-.+++.. .--..+.++|++=..+. .. ...+.+--+.|
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~~~~l~vvpier~~akfv~v 280 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEYECCLAVVPIERGGAKFVDV 280 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchhhceeEEEEeccCCcceeEe
Confidence 011 0 011 124567654444332 34668899999865432 12 22333334566
Q ss_pred cC--CCCEEEEeeCCCeEEEEEccc
Q psy9316 215 AP--NGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 215 sp--~g~~la~gs~d~~i~~~d~~~ 237 (264)
-| +...|.++-.||.+.+|-.+.
T Consensus 281 lP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 281 LPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ccCCCcceEEEEecCCeEEEEEeec
Confidence 55 456899999999999996443
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0062 Score=56.27 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=80.9
Q ss_pred eEeecCCCeeEEEeecCceEEeccccccccc---cccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEE-
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTHNDIKE---YQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV- 91 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~- 91 (264)
.+.+.+.+.+++.++-.|.+.+|..+..... ..+-.+.+..+..+++..++|.|+..|.|.+|.++..........
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 3445556677778888999988877544332 223345667777899999999999999999998876433322211
Q ss_pred --EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCC
Q psy9316 92 --YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128 (264)
Q Consensus 92 --~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~ 128 (264)
-+.|...|++++|+++. ..+.+|...|+|.+--+++
T Consensus 118 ~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence 12467889999999854 7788999999998877765
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.093 Score=43.75 Aligned_cols=170 Identities=7% Similarity=0.166 Sum_probs=89.5
Q ss_pred eEEEeecCceEEecccc-ccccc------ccc-CCCCEEEEEECCCC---C---eEEEEECCCcEEEEEecc--CCCCcc
Q psy9316 25 FHLVCKIDDYVKHFNTH-NDIKE------YQA-HGSKVHSVAWSCDG---R---RLASGSFDKSVAIFALDK--KGDLNK 88 (264)
Q Consensus 25 ~~~~~~~d~~~~~~~~~-~~~~~------~~~-h~~~V~~l~~s~~g---~---~l~s~s~dg~i~v~~~~~--~~~~~~ 88 (264)
++..+.-.|.|+.|+.- ..+.. +.+ -...|..+.|-+-. + .|+.-..+|.++-|-+.. ++....
T Consensus 57 lLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e 136 (282)
T PF15492_consen 57 LLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQE 136 (282)
T ss_pred EEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCccee
Confidence 34445557777777542 22211 111 13457777775422 2 455667888888876532 122222
Q ss_pred cEE--Eec-ccccEEeEEEecCCCCeEEEEeC-CCc----------EEEEECCCCCcceEEEeecCCCcE------EEEE
Q psy9316 89 EVV--YRG-HTGSVDQLCWHATNPDLLSTASG-DKT----------VRIWDARTQKSQIMLASGSFDKSV------AIFA 148 (264)
Q Consensus 89 ~~~--~~~-h~~~v~~i~~~~~~~~~l~s~s~-dg~----------i~vwd~~~~~~~~~~~~~~~d~~i------~i~~ 148 (264)
... +.. +...|.++.++|.. ++|+.|+. ... +.-|.+-+...-...+....|... .++.
T Consensus 137 ~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~ 215 (282)
T PF15492_consen 137 NHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLR 215 (282)
T ss_pred eEEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceee
Confidence 222 222 35678999999855 55555553 332 233444333222222222222211 1111
Q ss_pred eccCCCccceEE-EeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc
Q psy9316 149 LDKKGDLNKEVV-YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200 (264)
Q Consensus 149 ~~~~~~~~~~~~-~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~ 200 (264)
+-. . .... ..+..+.|..|..+|+ +.++|+...+|.|.+|++.+-..
T Consensus 216 ~~~---~-~~fs~~~~~~d~i~kmSlSPd-g~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 216 IPS---F-KFFSRQGQEQDGIFKMSLSPD-GSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ccc---e-eeeeccccCCCceEEEEECCC-CCEEEEEEcCCeEEEEecCcchh
Confidence 100 0 0000 0123568999999995 57899999999999999987654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.077 Score=46.83 Aligned_cols=173 Identities=15% Similarity=0.075 Sum_probs=90.4
Q ss_pred CCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce--------
Q psy9316 62 DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-------- 133 (264)
Q Consensus 62 ~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-------- 133 (264)
++..++.++.++.+..+|... +... -... -...+.+.... .+..++.++.+|.+..||.++++...
T Consensus 104 ~~~~v~v~~~~g~l~ald~~t-G~~~--W~~~-~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~ 177 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAED-GKEL--WRAK-LSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA 177 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCC-CcEe--eeec-cCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc
Confidence 567888888999999998754 2211 0111 11112111111 12456667789999999987754211
Q ss_pred --------------EEEeecCCCcEEEEEeccCCCccceEEE--eccc--cceeeEEEcC-CCCCEEEEEeCCCcEEEEe
Q psy9316 134 --------------MLASGSFDKSVAIFALDKKGDLNKEVVY--RGHT--GSVDQLCWHA-TNPDLLSTASGDKTVRIWD 194 (264)
Q Consensus 134 --------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~--~~h~--~~i~~i~~~~-~~~~~i~s~~~dg~i~iwD 194 (264)
.+..+..++.+..++............. .+.. .++..+.-.| .....+..++.+|.++.||
T Consensus 178 ~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 178 LTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred eeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 1234445555555554332211110000 0000 0000010011 0124566678899999999
Q ss_pred CCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 195 ARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 195 ~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
.++++..-........ .....+..+.+++.++.++.+|..++....
T Consensus 258 ~~tG~~~W~~~~~~~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W 303 (377)
T TIGR03300 258 LRSGRVLWKRDASSYQ--GPAVDDNRLYVTDADGVVVALDRRSGSELW 303 (377)
T ss_pred CCCCcEEEeeccCCcc--CceEeCCEEEEECCCCeEEEEECCCCcEEE
Confidence 9988753322211111 122357788888889999999987765443
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.015 Score=50.75 Aligned_cols=86 Identities=12% Similarity=-0.003 Sum_probs=57.6
Q ss_pred EcCCCCCEEEEEe---------CCCcEEEEeCCCCcceeEee-cC--------ceEEEEEcCCCCEEEEee-C-CCeEEE
Q psy9316 173 WHATNPDLLSTAS---------GDKTVRIWDARTQKSQIIAT-KG--------ENINITWAPNGNTIAVGN-K-EDLVTF 232 (264)
Q Consensus 173 ~~~~~~~~i~s~~---------~dg~i~iwD~~t~~~~~~~~-~~--------~~~~v~~sp~g~~la~gs-~-d~~i~~ 232 (264)
++|++..+.++.+ .+..|.+||..+.+...... +. ....++++|||++|.+.. . +..+.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 6777666666666 68999999999987533222 11 123689999999998775 4 789999
Q ss_pred EEcccCCCCCC------------CcccCcccceeeeee
Q psy9316 233 IDVVKSLPPRE------------RTLTSRGHLMETRSL 258 (264)
Q Consensus 233 ~d~~~~~~~~~------------~~~~~~~h~~~~~~~ 258 (264)
+|+.......| ...+++.|+.|.+.+
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~ 170 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLA 170 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceE
Confidence 99875332221 112445677766654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.013 Score=54.94 Aligned_cols=130 Identities=15% Similarity=0.202 Sum_probs=85.7
Q ss_pred ccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC-----------CcceEEEeecCCCcEEEEEeccCCCccceEEEeccc
Q psy9316 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ-----------KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165 (264)
Q Consensus 97 ~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~-----------~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~ 165 (264)
..+.+++++ .+.++-|+-+|.+++.+.... .....+++++.||++.|..+....+.. .....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~----~~df~ 112 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEIT----QYDFK 112 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccce----eEecC
Confidence 344455443 255666777777777766432 123478888899988887765443322 12234
Q ss_pred cceeeEEEcCC----CCCEEEEEeCCCcEEEEeCC---CCcc-eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 166 GSVDQLCWHAT----NPDLLSTASGDKTVRIWDAR---TQKS-QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 166 ~~i~~i~~~~~----~~~~i~s~~~dg~i~iwD~~---t~~~-~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.++.+++++|+ ....+++|+..| +.++.-+ .+.. ......+.+.++.|. |+++|-++.+|+ ++||+.+
T Consensus 113 rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv-~vyd~~~ 188 (846)
T KOG2066|consen 113 RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGV-KVYDTPT 188 (846)
T ss_pred CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCc-EEEeccc
Confidence 58999999996 345788999999 7776432 1111 223446778899997 899999986665 9999775
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.081 Score=46.70 Aligned_cols=162 Identities=14% Similarity=0.061 Sum_probs=85.5
Q ss_pred CCeEEEEECCCcEEEEEeccCCCCcccEEEecccccE-----EeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce----
Q psy9316 63 GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV-----DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI---- 133 (264)
Q Consensus 63 g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v-----~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---- 133 (264)
+..++.++.++.+..+|.......- .++...... ...... + ..++.+..+|.+..+|+++++...
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W---~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLW---TYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceee---EEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 4567777788999999875422111 111110000 011111 2 356677778888888887654211
Q ss_pred ------------------------EEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCc
Q psy9316 134 ------------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 189 (264)
Q Consensus 134 ------------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~ 189 (264)
.+..++.++.+..++......... .. . ........ .+..+..++.+|.
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~---~~-~-~~~~~p~~---~~~~vyv~~~~G~ 290 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK---RD-A-SSYQGPAV---DDNRLYVTDADGV 290 (377)
T ss_pred ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEe---ec-c-CCccCceE---eCCEEEEECCCCe
Confidence 122334455555665543211111 00 0 01111111 2345566788999
Q ss_pred EEEEeCCCCcceeEe-e-cCc-eEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 190 VRIWDARTQKSQIIA-T-KGE-NINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 190 i~iwD~~t~~~~~~~-~-~~~-~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
+..+|..+++..-.. . ... ..+... .+..|.+++.+|.++++|..++..
T Consensus 291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 291 VVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred EEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 999999988753222 1 111 111122 477999999999999999776433
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0018 Score=55.97 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=62.5
Q ss_pred EeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce-eEeecCceEEEEEcCCC-CEEEEeeCCCeEEEEEcccC
Q psy9316 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-IIATKGENINITWAPNG-NTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 161 ~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~-~~~~~~~~~~v~~sp~g-~~la~gs~d~~i~~~d~~~~ 238 (264)
...|..-|..++|+|.+..++..++.+..|+|.|+++.... .......+++++|.-|. .++.+|-.+|+|++||++..
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 34566679999999988778889999999999999987642 22334568899998655 57788999999999998853
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0024 Score=34.90 Aligned_cols=33 Identities=36% Similarity=0.810 Sum_probs=28.1
Q ss_pred EeccccceeeEEEcCCCCCEEEEEeCCCcEEEEe
Q psy9316 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194 (264)
Q Consensus 161 ~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD 194 (264)
+..|...|.++.|++.. .++++++.|+.+++||
T Consensus 8 ~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 45677889999999854 7889999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.073 Score=51.19 Aligned_cols=60 Identities=17% Similarity=0.291 Sum_probs=45.5
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcceeE--eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 176 TNPDLLSTASGDKTVRIWDARTQKSQII--ATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 176 ~~~~~i~s~~~dg~i~iwD~~t~~~~~~--~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.....||.|+.+|.||+||--....... ....++..|+.+.||+|+++-+ +..+-++|+.
T Consensus 586 t~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 586 TEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred cCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 3456889999999999999544332222 2345788999999999997777 7888888864
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.041 Score=49.24 Aligned_cols=150 Identities=13% Similarity=0.228 Sum_probs=90.3
Q ss_pred EEEEECCCCCeEEEEEC-----------CCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEE-eCCCcEE
Q psy9316 55 HSVAWSCDGRRLASGSF-----------DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA-SGDKTVR 122 (264)
Q Consensus 55 ~~l~~s~~g~~l~s~s~-----------dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~-s~dg~i~ 122 (264)
..|.|++.|++|+.--. ..++.++.+.. ... .+...-.++|.+.+|.|.+.++.+.. -.+-.+.
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i--~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s 301 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSI--PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVS 301 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--ccc--ceeccccccceeeeecccCCceeEEeccccccee
Confidence 35778888887664311 13455555542 111 11224578899999999776544433 3467777
Q ss_pred EEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEe--CCCcEEEEeCCCCcc
Q psy9316 123 IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS--GDKTVRIWDARTQKS 200 (264)
Q Consensus 123 vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~--~dg~i~iwD~~t~~~ 200 (264)
++|++.. +.. ....+.=+.+.|+|....+|+.|- ..|.+.+||....-.
T Consensus 302 ~~~lr~N--------------l~~---------------~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 302 VFDLRGN--------------LRF---------------YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred ecccccc--------------eEE---------------ecCCcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence 7777642 111 111233345677876544444332 358899999987754
Q ss_pred eeEeecCceE-EEEEcCCCCEEEEee------CCCeEEEEEccc
Q psy9316 201 QIIATKGENI-NITWAPNGNTIAVGN------KEDLVTFIDVVK 237 (264)
Q Consensus 201 ~~~~~~~~~~-~v~~sp~g~~la~gs------~d~~i~~~d~~~ 237 (264)
..-...+... .+.|+|||.++.+.. .|..+.+||+..
T Consensus 353 ~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 353 VAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 4434444433 467999999987764 366799999875
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0036 Score=57.10 Aligned_cols=77 Identities=23% Similarity=0.381 Sum_probs=60.1
Q ss_pred cceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecC-ceE-EEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCC
Q psy9316 166 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKG-ENI-NITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRE 243 (264)
Q Consensus 166 ~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~-~~~-~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~ 243 (264)
..|..+.|+|. -++||.+..+|.+-+.-+..++......++ .+. +++|.|||+.||+|-+||.|.+.|+.++.....
T Consensus 21 ~~i~~~ewnP~-~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPK-MDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCc-cchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 45778999985 479999999999988877754443333233 344 899999999999999999999999998665554
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.064 Score=48.28 Aligned_cols=172 Identities=19% Similarity=0.312 Sum_probs=94.9
Q ss_pred CCCEEEEEECCCCCeEEEEEC---C-CcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEE--EE
Q psy9316 51 GSKVHSVAWSCDGRRLASGSF---D-KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR--IW 124 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~---d-g~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~--vw 124 (264)
...+..-+|+|+++.++..+. . ..+.+++++.... .....+.++ -....|+|++..++++..+||..- +.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-~~i~~~~g~---~~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-PVILNFNGN---NGAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-ceeeccCCc---cCCccCCCCCCEEEEEECCCCCccEEEE
Confidence 345666789999988776542 2 2477777765332 222223333 344579998888888888898855 45
Q ss_pred ECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEe
Q psy9316 125 DARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS 185 (264)
Q Consensus 125 d~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~ 185 (264)
|+.++... .++.+.+..|...||..+.++......++..-... .-.|+|++..+.....
T Consensus 268 dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~--~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 268 DLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS--NPVWSPDGDKIVFESS 345 (425)
T ss_pred cCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc--CccCCCCCCEEEEEec
Confidence 76554311 12334445555566665554443333333222111 4567776544444443
Q ss_pred CCCc--EEEEeCCCCcc-eeEeecCceEEEEEcCCCCEEEEeeCCC
Q psy9316 186 GDKT--VRIWDARTQKS-QIIATKGENINITWAPNGNTIAVGNKED 228 (264)
Q Consensus 186 ~dg~--i~iwD~~t~~~-~~~~~~~~~~~v~~sp~g~~la~gs~d~ 228 (264)
.+|. |.+.|+.+... ...........-+|.|+|+.+...+..+
T Consensus 346 ~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 346 SGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred cCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence 3455 66667766552 2222223334567888888775554444
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0066 Score=53.41 Aligned_cols=162 Identities=12% Similarity=0.114 Sum_probs=102.9
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeC-CCcEEEEECC
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG-DKTVRIWDAR 127 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~-dg~i~vwd~~ 127 (264)
.|.+.|+-+.- ...+++.+|+.||.++.|--....-..-..-+.+|.+.+.+++.+. ++.++.|.+. |..++++|+.
T Consensus 7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEee
Confidence 67777765543 4678999999999999994221011111112457888888887765 4467777777 9999999987
Q ss_pred CCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCC--CEEEEEeCCCcEEEEeCCCCccee---
Q psy9316 128 TQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP--DLLSTASGDKTVRIWDARTQKSQI--- 202 (264)
Q Consensus 128 ~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~--~~i~s~~~dg~i~iwD~~t~~~~~--- 202 (264)
+-.-..+ |++.++ .. .-.+..+|.+. .+-++...+|.+.|+|-+..-++.
T Consensus 85 n~Dminm---------iKL~~l------Pg----------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f 139 (558)
T KOG0882|consen 85 NFDMINM---------IKLVDL------PG----------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF 139 (558)
T ss_pred ccchhhh---------cccccC------CC----------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee
Confidence 5322111 111111 00 00011112111 233445578999999998765432
Q ss_pred -EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 203 -IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 203 -~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
..+..++..+.++|.++.+.+....|+|.-|....
T Consensus 140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred cccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence 23456788899999999999999999999998763
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00037 Score=63.52 Aligned_cols=190 Identities=18% Similarity=0.249 Sum_probs=112.9
Q ss_pred cccCCCCEEEEEECC-CCCeEEEEE----CCCcEEEEEeccCCCCccc-EEEec-ccccEEeEEEecCCCCeEEEEeCCC
Q psy9316 47 YQAHGSKVHSVAWSC-DGRRLASGS----FDKSVAIFALDKKGDLNKE-VVYRG-HTGSVDQLCWHATNPDLLSTASGDK 119 (264)
Q Consensus 47 ~~~h~~~V~~l~~s~-~g~~l~s~s----~dg~i~v~~~~~~~~~~~~-~~~~~-h~~~v~~i~~~~~~~~~l~s~s~dg 119 (264)
..+|....++++|++ |.+.||.|- .|..+.+||+...-..+++ ..+.+ .-.....+||. .+..++++|....
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr 176 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSR 176 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccc-cCcchhhcccccc
Confidence 346777899999998 778888774 4677999998754211111 11222 23345578898 4667888888899
Q ss_pred cEEEEECCCCCcc------------------eEEEeecCCCcEEEEE-ecc-CCCccceEEE-eccccceeeEEEcCCCC
Q psy9316 120 TVRIWDARTQKSQ------------------IMLASGSFDKSVAIFA-LDK-KGDLNKEVVY-RGHTGSVDQLCWHATNP 178 (264)
Q Consensus 120 ~i~vwd~~~~~~~------------------~~~~~~~~d~~i~i~~-~~~-~~~~~~~~~~-~~h~~~i~~i~~~~~~~ 178 (264)
.+.++|++-.... .-..+...|+.|++|| .+. .+.+.....- ......+..++|+|...
T Consensus 177 ~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt 256 (783)
T KOG1008|consen 177 SVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT 256 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc
Confidence 9999999732100 0123445689999999 321 1111111000 01123488899999876
Q ss_pred CEEEEEe-CCCcEEEEeCCCC---------cceeEee---------cCceEEEEEcCCC--CEEEEeeCCCeEEEEEccc
Q psy9316 179 DLLSTAS-GDKTVRIWDARTQ---------KSQIIAT---------KGENINITWAPNG--NTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 179 ~~i~s~~-~dg~i~iwD~~t~---------~~~~~~~---------~~~~~~v~~sp~g--~~la~gs~d~~i~~~d~~~ 237 (264)
..+++.. ..++|+.+|+..- ....+.. ...+...+|++.. ....++..+..+.-++|.+
T Consensus 257 glla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e 336 (783)
T KOG1008|consen 257 GLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE 336 (783)
T ss_pred chhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh
Confidence 6666544 4588999998521 1111111 1234556677644 3455666667777777665
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.33 Score=46.34 Aligned_cols=173 Identities=14% Similarity=0.129 Sum_probs=101.7
Q ss_pred eEEEeecCceEEeccccccc-cccccCCCC-EEEEEECCCCCeEEEEECCCc-----EEEEEeccCCCCc-ccEE----E
Q psy9316 25 FHLVCKIDDYVKHFNTHNDI-KEYQAHGSK-VHSVAWSCDGRRLASGSFDKS-----VAIFALDKKGDLN-KEVV----Y 92 (264)
Q Consensus 25 ~~~~~~~d~~~~~~~~~~~~-~~~~~h~~~-V~~l~~s~~g~~l~s~s~dg~-----i~v~~~~~~~~~~-~~~~----~ 92 (264)
...++..+|-|..++..-.+ +.|+.+... |..|....+..+|++.+.|+. +++|+++....-. +... .
T Consensus 37 ~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri 116 (933)
T KOG2114|consen 37 SVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRI 116 (933)
T ss_pred eEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeee
Confidence 34568888988877766544 788888766 666665555578888877654 8999988642211 1111 1
Q ss_pred ec-----ccccEEeEEEecCCCCeEEEEeCCCcEEEEE--CCC-----------CCcce-EEE---------eecCCCcE
Q psy9316 93 RG-----HTGSVDQLCWHATNPDLLSTASGDKTVRIWD--ART-----------QKSQI-MLA---------SGSFDKSV 144 (264)
Q Consensus 93 ~~-----h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd--~~~-----------~~~~~-~~~---------~~~~d~~i 144 (264)
-. -..++..++.+.+ -..++.|=.+|.|..+. +-. ++..+ -++ -...-..|
T Consensus 117 ~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V 195 (933)
T KOG2114|consen 117 FTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQV 195 (933)
T ss_pred eccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEeccee
Confidence 12 1345667777754 46777788899998873 211 11110 000 01112345
Q ss_pred EEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee
Q psy9316 145 AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI 202 (264)
Q Consensus 145 ~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~ 202 (264)
.+|.+..++ ........|-.++++..+++....+|+ +.+..+.+||........
T Consensus 196 ~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIc--a~~e~l~fY~sd~~~~cf 249 (933)
T KOG2114|consen 196 MLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFIC--AGSEFLYFYDSDGRGPCF 249 (933)
T ss_pred EEEEecCCC--cceeeeccCCccceeeecCCCCccEEE--ecCceEEEEcCCCcceee
Confidence 666665332 223334556667888888765444554 447789999888654433
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.21 Score=42.53 Aligned_cols=174 Identities=16% Similarity=0.186 Sum_probs=88.6
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEE-----ECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeC-
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASG-----SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG- 117 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~-----s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~- 117 (264)
-+.|.+|. .|++||++|++. ...|.|-|||... .......+..|--.-..+.+.|++..+++.-+.
T Consensus 49 gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI 120 (305)
T PF07433_consen 49 GRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGI 120 (305)
T ss_pred CCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCC
Confidence 34566775 589999999985 3357899999862 233333355554445566778866444332110
Q ss_pred -----CCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEE--eccccceeeEEEcCCCCCEEE--------
Q psy9316 118 -----DKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY--RGHTGSVDQLCWHATNPDLLS-------- 182 (264)
Q Consensus 118 -----dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~--~~h~~~i~~i~~~~~~~~~i~-------- 182 (264)
.|..++ |+.+- +-++.+.|.. ++.+.....+ .-|+-+|.-+++.+++ ..++
T Consensus 121 ~Thpd~GR~kL-Nl~tM-----------~psL~~ld~~-sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~ 186 (305)
T PF07433_consen 121 ETHPDSGRAKL-NLDTM-----------QPSLVYLDAR-SGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDP 186 (305)
T ss_pred ccCcccCceec-Chhhc-----------CCceEEEecC-CCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCC
Confidence 022222 22221 1222222221 1222111122 2345567777776542 2222
Q ss_pred --------EEeCCCcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEE-EeeCCCeEEEEEcccCCCC
Q psy9316 183 --------TASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIA-VGNKEDLVTFIDVVKSLPP 241 (264)
Q Consensus 183 --------s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la-~gs~d~~i~~~d~~~~~~~ 241 (264)
.-..++.+...++.... .....+++-+|+++++|..++ ++=..+.+.+||..++...
T Consensus 187 ~~~~PLva~~~~g~~~~~~~~p~~~--~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 187 GDAPPLVALHRRGGALRLLPAPEEQ--WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred CccCCeEEEEcCCCcceeccCChHH--HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 22222222222222111 112335677999999998774 5556778999998765543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.041 Score=49.72 Aligned_cols=142 Identities=15% Similarity=0.196 Sum_probs=73.6
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEE-ECC
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW-DAR 127 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vw-d~~ 127 (264)
...-....+.++|+|+.++.+ .||.-.+|... .... ...+......|.+ + ..+++-.....|+++ +++
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~---~~r~-----k~~G~g~~~vw~~-~-n~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTAL---AWRN-----KAFGSGLSFVWSS-R-NRYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETT---TTEE-----EEEEE-SEEEE-T-S-SEEEEE-TTS-EEEEETTE
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEcc---CCcc-----cccCceeEEEEec-C-ccEEEEECCCeEEEEEcCc
Confidence 344457789999999999984 57888888621 1111 1234556678887 3 345555567778885 332
Q ss_pred CCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecC
Q psy9316 128 TQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKG 207 (264)
Q Consensus 128 ~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~ 207 (264)
... ...+ . ....+..|.. +.+|+..+ ++.|.+||.++++......-.
T Consensus 99 ~~~-~k~i------------------------~---~~~~~~~If~----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~ 145 (443)
T PF04053_consen 99 NEV-VKSI------------------------K---LPFSVEKIFG----GNLLGVKS-SDFICFYDWETGKLIRRIDVS 145 (443)
T ss_dssp E-T-T--------------------------------SS-EEEEE-----SSSEEEEE-TTEEEEE-TTT--EEEEESS-
T ss_pred ccc-ceEE------------------------c---CCcccceEEc----CcEEEEEC-CCCEEEEEhhHcceeeEEecC
Confidence 111 0000 0 0012333322 34554444 558999999998754443333
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q psy9316 208 ENINITWAPNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 208 ~~~~v~~sp~g~~la~gs~d~~i~~~d~ 235 (264)
.+..|-|+++|+++|..+++ .+++++-
T Consensus 146 ~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 36789999999999999855 5566663
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.32 Score=43.78 Aligned_cols=172 Identities=12% Similarity=0.226 Sum_probs=89.9
Q ss_pred EEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCC-CeEE-----EEeCCCcEEEEECCCC
Q psy9316 56 SVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP-DLLS-----TASGDKTVRIWDARTQ 129 (264)
Q Consensus 56 ~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~~l~-----s~s~dg~i~vwd~~~~ 129 (264)
-++|+.+.+++|-. ....+.++++.. +......-.-....+....|+|.+. ..|+ ..+.++++++|-+-.+
T Consensus 136 ~~k~s~~D~y~ARv-v~~sl~i~e~t~--n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~ 212 (561)
T COG5354 136 VLKFSIDDKYVARV-VGSSLYIHEITD--NIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN 212 (561)
T ss_pred eeeeeecchhhhhh-ccCeEEEEecCC--ccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC
Confidence 57788887777665 345788888632 2211100000123466667777532 2222 2345666777765432
Q ss_pred Ccc----------------------eEEE-ee-----cC--CCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCC
Q psy9316 130 KSQ----------------------IMLA-SG-----SF--DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD 179 (264)
Q Consensus 130 ~~~----------------------~~~~-~~-----~~--d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~ 179 (264)
... +.++ +- ++ ..++.|+++..++ +.. ...-.++|...+|.|.+..
T Consensus 213 s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V---~~~~~~pVhdf~W~p~S~~ 288 (561)
T COG5354 213 SVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPV---EKDLKDPVHDFTWEPLSSR 288 (561)
T ss_pred CeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cce---eccccccceeeeecccCCc
Confidence 110 0011 00 01 1234555554221 111 1133578999999997655
Q ss_pred E-EEEEeCCCcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCC---CeEEEEEc
Q psy9316 180 L-LSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKE---DLVTFIDV 235 (264)
Q Consensus 180 ~-i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d---~~i~~~d~ 235 (264)
+ +++|-..-.+-++|+++.. ......+.-..+-|||.++++++++=| |-+.+||+
T Consensus 289 F~vi~g~~pa~~s~~~lr~Nl-~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 289 FAVISGYMPASVSVFDLRGNL-RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred eeEEecccccceeecccccce-EEecCCcccccccccCcccEEEEecCCccccceEEecc
Confidence 4 5566788899999998762 223333333445667777766664333 33666663
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.28 Score=40.51 Aligned_cols=185 Identities=16% Similarity=0.192 Sum_probs=100.6
Q ss_pred CceEeec-CCCeeEEEeecCceEEe-cccccc--cccc--cc-CCCCEEEEEECCCCCeEEEEECC--------CcEEEE
Q psy9316 14 PEYKLLP-SGSQFHLVCKIDDYVKH-FNTHND--IKEY--QA-HGSKVHSVAWSCDGRRLASGSFD--------KSVAIF 78 (264)
Q Consensus 14 ~~~~~~~-~~~~~~~~~~~d~~~~~-~~~~~~--~~~~--~~-h~~~V~~l~~s~~g~~l~s~s~d--------g~i~v~ 78 (264)
|++..+. .++. +++|...+.... ....+. +... .. .....++++++|+|+..++-... |.+..+
T Consensus 42 ~~G~~~~~~~g~-l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~ 120 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRI 120 (246)
T ss_dssp EEEEEEECTTSE-EEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEE
T ss_pred CceEEEEccCCE-EEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEE
Confidence 6665555 3443 345555555433 122211 1111 11 23468899999999977775533 334444
Q ss_pred EeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEE-EEeccCCCccc
Q psy9316 79 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAI-FALDKKGDLNK 157 (264)
Q Consensus 79 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i-~~~~~~~~~~~ 157 (264)
+.+ +.. ......-.....++|+|++..++++-+..+.|..+|++....... ...+ .++
T Consensus 121 ~~~--~~~---~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~--------~~~~~~~~-------- 179 (246)
T PF08450_consen 121 DPD--GKV---TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS--------NRRVFIDF-------- 179 (246)
T ss_dssp ETT--SEE---EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE--------EEEEEEE---------
T ss_pred CCC--CeE---EEEecCcccccceEECCcchheeecccccceeEEEecccccccee--------eeeeEEEc--------
Confidence 432 221 112223455678999997755566667788888888764322100 0001 111
Q ss_pred eEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeec-CceEEEEE-cCCCCEEEEee
Q psy9316 158 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK-GENINITW-APNGNTIAVGN 225 (264)
Q Consensus 158 ~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~-~~~~~v~~-sp~g~~la~gs 225 (264)
..-......+++.+ ++.+.++....+.|.++|.+.+.......+ ..+.+++| .|+.+.|.+-+
T Consensus 180 ----~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 180 ----PGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ----SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ----CCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 11112355677776 456777777899999999994433333344 57889999 47777665544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.083 Score=47.92 Aligned_cols=156 Identities=16% Similarity=0.231 Sum_probs=87.9
Q ss_pred EEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCC-----------CcEE
Q psy9316 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-----------KTVR 122 (264)
Q Consensus 54 V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~d-----------g~i~ 122 (264)
=+.+.|||.|.+|++--..| |.+|-- ........+ .|. .|.-+.|+|-. .+|++=|.- ..++
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG---~~f~r~~RF-~Hp-~Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGG---ESFDRIQRF-YHP-GVQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecC---ccHHHHHhc-cCC-CceeeecCCcc-ceEEEecCCccccCcccCCCceEE
Confidence 35788999999999987766 788932 222222222 243 46778888844 677654432 3456
Q ss_pred EEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee
Q psy9316 123 IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI 202 (264)
Q Consensus 123 vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~ 202 (264)
+||+.++.....+.+ ++.......-+.|+- +..++|--. ..+|.||+..+....-
T Consensus 286 IWDI~tG~lkrsF~~-----------------------~~~~~~~WP~frWS~-DdKy~Arm~-~~sisIyEtpsf~lld 340 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPV-----------------------IKSPYLKWPIFRWSH-DDKYFARMT-GNSISIYETPSFMLLD 340 (698)
T ss_pred EEEccccchhcceec-----------------------cCCCccccceEEecc-CCceeEEec-cceEEEEecCceeeec
Confidence 666666543322211 111111223357765 446766544 4689999877643211
Q ss_pred E--eecCceEEEEEcCCCCEEEEeeCCC-----eEEEEEcccCCCC
Q psy9316 203 I--ATKGENINITWAPNGNTIAVGNKED-----LVTFIDVVKSLPP 241 (264)
Q Consensus 203 ~--~~~~~~~~v~~sp~g~~la~gs~d~-----~i~~~d~~~~~~~ 241 (264)
. .....+-...|||-++.||.=+... .+.+..+..++..
T Consensus 341 ~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i 386 (698)
T KOG2314|consen 341 KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI 386 (698)
T ss_pred ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcccee
Confidence 1 1123456788999888887654332 2556665544443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.36 Score=39.29 Aligned_cols=186 Identities=16% Similarity=0.126 Sum_probs=93.2
Q ss_pred EEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecc----c-ccE
Q psy9316 27 LVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH----T-GSV 99 (264)
Q Consensus 27 ~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h----~-~~v 99 (264)
.++..++.+..++. ++.+-++.. .+.+.... ..++..++.++.|+.+..+|... +...-.. .... . ...
T Consensus 40 ~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~t-G~~~W~~-~~~~~~~~~~~~~ 115 (238)
T PF13360_consen 40 YVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKT-GKVLWSI-YLTSSPPAGVRSS 115 (238)
T ss_dssp EEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTT-SCEEEEE-EE-SSCTCSTB--
T ss_pred EEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCC-cceeeee-ccccccccccccc
Confidence 44557777776664 333333332 11111111 22466677777888888888543 3221110 1111 1 011
Q ss_pred EeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccce-eeEEEcCCCC
Q psy9316 100 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV-DQLCWHATNP 178 (264)
Q Consensus 100 ~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i-~~i~~~~~~~ 178 (264)
....+. +..++.+..++.+..+|+++++...........+...+. ....+ ..+.+. ++
T Consensus 116 ~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~----------------~~~~~~~~~~~~--~~ 174 (238)
T PF13360_consen 116 SSPAVD---GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS----------------SFSDINGSPVIS--DG 174 (238)
T ss_dssp SEEEEE---TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE----------------EETTEEEEEECC--TT
T ss_pred cCceEe---cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee----------------eecccccceEEE--CC
Confidence 122222 356777788999999999887643222111100000000 00111 122222 23
Q ss_pred CEEEEEeCCCc-EEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 179 DLLSTASGDKT-VRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 179 ~~i~s~~~dg~-i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
.+..++.+|. +.+ |+.+++.......... .....+++..|++++.++.+..||+.++..
T Consensus 175 -~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~~-~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 175 -RVYVSSGDGRVVAV-DLATGEKLWSKPISGI-YSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp -EEEEECCTSSEEEE-ETTTTEEEEEECSS-E-CECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred -EEEEEcCCCeEEEE-ECCCCCEEEEecCCCc-cCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 4445566775 555 9999874432222222 122567888888888999999999876543
|
... |
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.049 Score=50.57 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=79.6
Q ss_pred CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
...|.--+++..+++|+.|+.-|.+.+|+-.... +.. ....+-.+.+..++.++ ...+++.|+..|.|.++.++...
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~-~~~-~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE-MRK-LKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchh-hhc-ccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccC
Confidence 3345555566779999999999999999754321 111 11112233334445555 44688888889999999887644
Q ss_pred cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q psy9316 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197 (264)
Q Consensus 131 ~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t 197 (264)
....+..... -..|...|++++|+++ ...+.+|...|.|..--+.+
T Consensus 110 p~~~~~~t~~--------------------d~~~~~rVTal~Ws~~-~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPC--------------------DKSHKCRVTALEWSKN-GMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccc--------------------cccCCceEEEEEeccc-ccEEeecCCCceEEEEEech
Confidence 3322211110 1236779999999974 56788999999999887766
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.095 Score=50.26 Aligned_cols=142 Identities=16% Similarity=0.226 Sum_probs=88.5
Q ss_pred eeEEEeecCceEEe--ccccccccccccCCCCEEEEEECCCCCeEEEEEC---------CCcEEEEEeccCCCCcccEEE
Q psy9316 24 QFHLVCKIDDYVKH--FNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSF---------DKSVAIFALDKKGDLNKEVVY 92 (264)
Q Consensus 24 ~~~~~~~~d~~~~~--~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~---------dg~i~v~~~~~~~~~~~~~~~ 92 (264)
-+...+...|.+-+ .+..+.+++|..|.+.|.++. -+|+.|+++|. |--|+|||+..-..+.. +
T Consensus 188 r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P---I 262 (1118)
T KOG1275|consen 188 RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP---I 262 (1118)
T ss_pred cEEEeecccceEEeecCCcCceeeeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCC---c
Confidence 34444566676644 344567889999999998755 56999999875 55578888753222221 1
Q ss_pred ecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEE
Q psy9316 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 172 (264)
Q Consensus 93 ~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~ 172 (264)
..+.++ .-+.|+|.-...++.+|..|...+-|..+-.+.. ..++ .+.-....+..++
T Consensus 263 ~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~----------~~~~------------~v~p~~s~i~~fD 319 (1118)
T KOG1275|consen 263 QFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP----------AGVK------------MVNPNGSGISAFD 319 (1118)
T ss_pred ccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc----------ccee------------EEccCCCcceeEE
Confidence 112222 3346777776778888888888877732211110 0001 1111223578888
Q ss_pred EcCCCCCEEEEEeCCCcEEEEe
Q psy9316 173 WHATNPDLLSTASGDKTVRIWD 194 (264)
Q Consensus 173 ~~~~~~~~i~s~~~dg~i~iwD 194 (264)
+++ +++.++-|..+|.|.+|-
T Consensus 320 iSs-n~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 320 ISS-NGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ecC-CCceEEEecccCcEeeec
Confidence 887 457888999999999995
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.61 Score=38.45 Aligned_cols=186 Identities=14% Similarity=0.138 Sum_probs=100.3
Q ss_pred eecCCCeeEEEeecCceEEeccccccccccccCCCCEEEEEEC-CCCCeEEEEECCCcEEEEEeccCCCCcccEEEe--c
Q psy9316 18 LLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWS-CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR--G 94 (264)
Q Consensus 18 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~--~ 94 (264)
+-+....+..+-...+.|..++............+ ...+.+. +++.+ +.+..+ .+.++|... +......... .
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l-~v~~~~-~~~~~d~~~-g~~~~~~~~~~~~ 82 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRL-YVADSG-GIAVVDPDT-GKVTVLADLPDGG 82 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEE-EEEETT-CEEEEETTT-TEEEEEEEEETTC
T ss_pred EECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEE-EEEEcC-ceEEEecCC-CcEEEEeeccCCC
Confidence 34544555545444566666655443322222222 6777777 56444 454454 455567653 2222211111 1
Q ss_pred -ccccEEeEEEecCCCCeEEEEeCC--------CcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccc
Q psy9316 95 -HTGSVDQLCWHATNPDLLSTASGD--------KTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165 (264)
Q Consensus 95 -h~~~v~~i~~~~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~ 165 (264)
......++++.+++ ++.++.... |.+..++.. + .+... ....
T Consensus 83 ~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~-------------~~~~~--------------~~~~ 133 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-G-------------KVTVV--------------ADGL 133 (246)
T ss_dssp SCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S-------------EEEEE--------------EEEE
T ss_pred cccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-C-------------eEEEE--------------ecCc
Confidence 23456777887755 444443322 223333322 1 11111 1112
Q ss_pred cceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc-----eeEe-ec-C--ceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 166 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-----QIIA-TK-G--ENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 166 ~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~-----~~~~-~~-~--~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
..-+.|+|+|++..++++-+..+.|..+|+..... .... .. . .+-.+++..+|+.+++.-..+.|.++|..
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 34578999997766777888899999999864321 1111 11 1 25679999999999888889999999976
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=96.08 E-value=1.8 Score=43.23 Aligned_cols=52 Identities=13% Similarity=0.096 Sum_probs=35.4
Q ss_pred EeecCceEEeccccccccccccC-CCCEEEEEECCCCCeEEEEECCCcEEEEE
Q psy9316 28 VCKIDDYVKHFNTHNDIKEYQAH-GSKVHSVAWSCDGRRLASGSFDKSVAIFA 79 (264)
Q Consensus 28 ~~~~d~~~~~~~~~~~~~~~~~h-~~~V~~l~~s~~g~~l~s~s~dg~i~v~~ 79 (264)
++..+|.+-..+..+...+..+. .+.|.+++|+||.+.++-...++++.+-+
T Consensus 85 v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 85 VITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred EEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 44556655554444444444444 56899999999999999888777776654
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0084 Score=57.04 Aligned_cols=121 Identities=16% Similarity=0.247 Sum_probs=81.3
Q ss_pred EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeE
Q psy9316 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 171 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i 171 (264)
+..|+...+|++|+. +.+.++.|+-.|.|+++++.++... -...+|.+.|+-+
T Consensus 1097 frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e--------------------------~s~ncH~SavT~v 1149 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSME--------------------------ESVNCHQSAVTLV 1149 (1516)
T ss_pred hhccccceeeEEeec-CCceEEeeeccceEEEEEccCcccc--------------------------ccccccccccccc
Confidence 556788899999987 4477888999999999999876522 1236788888877
Q ss_pred EEcCCCCCEEEEEeCCC-cEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 172 CWHATNPDLLSTASGDK-TVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 172 ~~~~~~~~~i~s~~~dg-~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
--+.++..++.+++... -..+|++.+- ......-....++.|+..-..-+.|+....+.+||+.+..+
T Consensus 1150 ePs~dgs~~Ltsss~S~PlsaLW~~~s~-~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1150 EPSVDGSTQLTSSSSSSPLSALWDASST-GGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSP 1218 (1516)
T ss_pred cccCCcceeeeeccccCchHHHhccccc-cCccccccccceeehhhhHHHHHhcccccceEEEecccCcH
Confidence 65544444454444433 5679998762 11121223345678887655567777778889999876443
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.038 Score=50.74 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=67.3
Q ss_pred CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEE-eEEEecCCCCeEEEEeCCCcEEEEECCCC
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD-QLCWHATNPDLLSTASGDKTVRIWDARTQ 129 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~-~i~~~~~~~~~l~s~s~dg~i~vwd~~~~ 129 (264)
...|..+.|+|..+.||.+..+|.+.+.-++ ......+..|..+++ +++|.|+ +.+++.|=.||+|++.|++++
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~D-GkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPD-GKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCC-CCEEEEEecCCeEEEEEccCC
Confidence 3468889999999999999999988887554 222234555666666 9999996 579999999999999999886
Q ss_pred CcceE-EEeecCCCcEEEEE
Q psy9316 130 KSQIM-LASGSFDKSVAIFA 148 (264)
Q Consensus 130 ~~~~~-~~~~~~d~~i~i~~ 148 (264)
..... ..+...|-+..+|+
T Consensus 95 ~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred Cceeccccccccchheeecc
Confidence 53221 23334444555564
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.51 Score=44.16 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=52.8
Q ss_pred eeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee----------Ee---ecCceEEEEEcCCCCEEEEeeCCCeEEEEE
Q psy9316 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI----------IA---TKGENINITWAPNGNTIAVGNKEDLVTFID 234 (264)
Q Consensus 168 i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~----------~~---~~~~~~~v~~sp~g~~la~gs~d~~i~~~d 234 (264)
-..+.++|++..+++++..++++.|.|+.+.+..+ .. ....+.-.+|.++|+.+.+---|..|.-||
T Consensus 323 PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 34577889887788888889999999998855211 11 111234578999999888888999999999
Q ss_pred ccc
Q psy9316 235 VVK 237 (264)
Q Consensus 235 ~~~ 237 (264)
+.+
T Consensus 403 ~~~ 405 (635)
T PRK02888 403 IEA 405 (635)
T ss_pred hHH
Confidence 875
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.2 Score=39.69 Aligned_cols=182 Identities=14% Similarity=0.185 Sum_probs=99.5
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCc----------------------------------------ccEEE
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN----------------------------------------KEVVY 92 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~----------------------------------------~~~~~ 92 (264)
.|..+.|.++..-|+.|...|.+.+|....+.... ....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47888899988888888899998888655331110 00112
Q ss_pred ecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-----------------------------------eEEEe
Q psy9316 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-----------------------------------IMLAS 137 (264)
Q Consensus 93 ~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------------------------------~~~~~ 137 (264)
+...++|++++.+.. -+++.|..+|.+.+.|+|..... ..+..
T Consensus 83 ~~~~g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 334678898887643 48899999999999999764210 13456
Q ss_pred ecCCCcEEEEEeccC--CCccceE-E-EeccccceeeEE-EcCCC--------------------CCEEEEEeCCCcEEE
Q psy9316 138 GSFDKSVAIFALDKK--GDLNKEV-V-YRGHTGSVDQLC-WHATN--------------------PDLLSTASGDKTVRI 192 (264)
Q Consensus 138 ~~~d~~i~i~~~~~~--~~~~~~~-~-~~~h~~~i~~i~-~~~~~--------------------~~~i~s~~~dg~i~i 192 (264)
|...|.+.+|.+... +...... . ...+.++|..|. ++... ..+++ .+.+..+++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV-vvSe~~irv 239 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV-VVSESDIRV 239 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE-EE-SSEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE-EEcccceEE
Confidence 667788887776432 2111111 1 113445554443 22111 11333 456889999
Q ss_pred EeCCCCcceeEeecCce--EEEEE-----cCCCCEEEEeeCCCeEEEEEccc
Q psy9316 193 WDARTQKSQIIATKGEN--INITW-----APNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 193 wD~~t~~~~~~~~~~~~--~~v~~-----sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
+..-+.+...+...... ..+.+ ...+..|++-..+|.+++|-+..
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 98887664333333322 22344 23678889999999999998765
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.43 Score=34.32 Aligned_cols=101 Identities=22% Similarity=0.324 Sum_probs=59.8
Q ss_pred EEeEEEe---cCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcC
Q psy9316 99 VDQLCWH---ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 175 (264)
Q Consensus 99 v~~i~~~---~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~ 175 (264)
|.++++. .++.+.|+.||.|..||+|+-.. .+ +. +. -+..|..++-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----~~-----------~E------------i~-e~~~v~~L~~~~ 52 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----IV-----------AE------------IT-ETDKVTSLCSLG 52 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----EE-----------EE------------Ee-cccceEEEEEcC
Confidence 4445443 33446788889999999987432 00 10 00 123455555443
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcceeEeecCceEEEEEc-CC--C-CEEEEeeCCCeEE
Q psy9316 176 TNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWA-PN--G-NTIAVGNKEDLVT 231 (264)
Q Consensus 176 ~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~s-p~--g-~~la~gs~d~~i~ 231 (264)
...|+.+-.+|+|-+|+-... .-....+..+.++.+. .+ | ..|++|-++|.|.
T Consensus 53 --~~~F~Y~l~NGTVGvY~~~~R-lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 53 --GGRFAYALANGTVGVYDRSQR-LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --CCEEEEEecCCEEEEEeCcce-eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 356788899999999977543 2333344456665543 33 3 3788998888865
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.04 Score=33.15 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=27.8
Q ss_pred CCCEEEEEECCCCCeEEEEECCCcEEEEEec
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALD 81 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~ 81 (264)
...|.+++|+|..+.||.|..+|.|.+|-++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3469999999999999999999999999763
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.41 Score=43.15 Aligned_cols=138 Identities=18% Similarity=0.278 Sum_probs=77.2
Q ss_pred cEEeEEEecCCCCeEEEEeC--C-CcEEEEECCCCCcce-------------------EEEeecCCCcEEEEEeccCCCc
Q psy9316 98 SVDQLCWHATNPDLLSTASG--D-KTVRIWDARTQKSQI-------------------MLASGSFDKSVAIFALDKKGDL 155 (264)
Q Consensus 98 ~v~~i~~~~~~~~~l~s~s~--d-g~i~vwd~~~~~~~~-------------------~~~~~~~d~~i~i~~~~~~~~~ 155 (264)
.+..-.|+|++..+....=. . ..+.++|+++++... ++.+...|+...||-++..+..
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN 273 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence 45556777766553333222 2 458888988765321 3445556676666655443332
Q ss_pred cceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEE--eCCCCcceeEeecC-ceEEEEEcCCCCEEEEeeCC-Ce--
Q psy9316 156 NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW--DARTQKSQIIATKG-ENINITWAPNGNTIAVGNKE-DL-- 229 (264)
Q Consensus 156 ~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iw--D~~t~~~~~~~~~~-~~~~v~~sp~g~~la~gs~d-~~-- 229 (264)
... +....+.-..=.|+|++..+..+.+..|.-.|| |.+.+......... ....-.|||||++++..+.. |.
T Consensus 274 ~~~--Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~ 351 (425)
T COG0823 274 LPR--LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWD 351 (425)
T ss_pred cee--cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCcee
Confidence 111 111111112447888877776666667766655 77766654333322 22367899999999888753 33
Q ss_pred EEEEEccc
Q psy9316 230 VTFIDVVK 237 (264)
Q Consensus 230 i~~~d~~~ 237 (264)
+.+.|+..
T Consensus 352 i~~~~~~~ 359 (425)
T COG0823 352 IDKNDLAS 359 (425)
T ss_pred eEEeccCC
Confidence 55565544
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.47 Score=43.30 Aligned_cols=70 Identities=10% Similarity=0.199 Sum_probs=46.3
Q ss_pred ceeeEEEcCCCCCEEEE--EeCCCcEEEEeCCCCcceeEeec--CceEEEEEcCCCCEEEEeeCCC------eEEEEEcc
Q psy9316 167 SVDQLCWHATNPDLLST--ASGDKTVRIWDARTQKSQIIATK--GENINITWAPNGNTIAVGNKED------LVTFIDVV 236 (264)
Q Consensus 167 ~i~~i~~~~~~~~~i~s--~~~dg~i~iwD~~t~~~~~~~~~--~~~~~v~~sp~g~~la~gs~d~------~i~~~d~~ 236 (264)
..+.+.|+|.+.-+++. ++..|.+.++|+.-...+..... .....+.|.|.|+|+.+++... -.++|+..
T Consensus 494 ~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 494 FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 45678999976544332 34589999999985443333222 2356789999999999998543 34556543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.052 Score=32.64 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=27.1
Q ss_pred CceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 207 GENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 207 ~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
..+..++|+|..+.+|.|+.+|.|.++.++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 457789999999999999999999999873
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.7 Score=37.52 Aligned_cols=104 Identities=19% Similarity=0.203 Sum_probs=63.4
Q ss_pred CeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCc
Q psy9316 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 189 (264)
Q Consensus 110 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~ 189 (264)
..+++++.++.+..||..+++. +|.....+.... . . + . ....++.++.++.
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~--------------~W~~~~~~~~~~---------~-~-~-~---~~~~v~v~~~~~~ 87 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKV--------------LWRFDLPGPISG---------A-P-V-V---DGGRVYVGTSDGS 87 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEE--------------EEEEECSSCGGS---------G-E-E-E---ETTEEEEEETTSE
T ss_pred CEEEEEcCCCEEEEEECCCCCE--------------EEEeeccccccc---------e-e-e-e---cccccccccceee
Confidence 4566678999999999987753 243322211111 1 0 1 1 1234455668889
Q ss_pred EEEEeCCCCcceeEe-ecC-----ceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 190 VRIWDARTQKSQIIA-TKG-----ENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 190 i~iwD~~t~~~~~~~-~~~-----~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
+..+|.++++..-.. ... ..........++.++++..++.+..+|+.++....
T Consensus 88 l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 88 LYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp EEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred eEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence 999999998864432 111 11222333348888888889999999988755533
|
... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.9 Score=38.82 Aligned_cols=49 Identities=24% Similarity=0.504 Sum_probs=33.7
Q ss_pred cEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCC
Q psy9316 74 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128 (264)
Q Consensus 74 ~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~ 128 (264)
.|.+|+.. |.......++. +.+.++.|.. + ..|+....||.++++|+..
T Consensus 62 ~I~iys~s--G~ll~~i~w~~--~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSS--GKLLSSIPWDS--GRIVGMGWTD-D-EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCC--CCEeEEEEECC--CCEEEEEECC-C-CeEEEEEcCCEEEEEeCCC
Confidence 48888643 44333334444 7899999975 3 4555678999999999853
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.047 Score=51.98 Aligned_cols=109 Identities=25% Similarity=0.443 Sum_probs=74.0
Q ss_pred EEEEECCCCCeEEEEE----CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 55 HSVAWSCDGRRLASGS----FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 55 ~~l~~s~~g~~l~s~s----~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
+-.+|+|...+++.++ ..|++.||- ++ |....-..+.-| ++++||+|.. -.+++|=.-|.+-+|..++.+
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dt-GEPqr~Vt~P~h---atSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DT-GEPQRDVTYPVH---ATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cC-CCCCccccccee---hhhhccChHH-HHHhhccccceeEEEecCCce
Confidence 3456999989988887 468888883 22 222221223334 5669999944 566666667888888876543
Q ss_pred cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCC
Q psy9316 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 196 (264)
Q Consensus 131 ~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~ 196 (264)
... ....|..+|..+.|+++ +..+.|+..=|.+.+|-..
T Consensus 93 ~ht--------------------------v~~th~a~i~~l~wS~~-G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 THT--------------------------VVETHPAPIQGLDWSHD-GTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eee--------------------------eccCCCCCceeEEecCC-CCeEEEcCCCceeEEEEee
Confidence 221 12358889999999985 4677889889999999543
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.75 Score=41.87 Aligned_cols=100 Identities=15% Similarity=0.184 Sum_probs=61.8
Q ss_pred EeecCCCcEEEEEeccCCCc-cceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce--eEeecCceEEE
Q psy9316 136 ASGSFDKSVAIFALDKKGDL-NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--IIATKGENINI 212 (264)
Q Consensus 136 ~~~~~d~~i~i~~~~~~~~~-~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~--~~~~~~~~~~v 212 (264)
..|-.|..+--||++..+.. ....+.++....-+.-|+......+|+.|+.+|-|++||--..... +......+.-|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeE
Confidence 34556777777887755431 1111222222222333333445568999999999999987332221 12233457778
Q ss_pred EEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 213 TWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 213 ~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.-+.+|+++++-+ +..+-+.|+.
T Consensus 478 dvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 478 DVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred EeeccCcEEEEec-ccEEEEEEEe
Confidence 8889999997766 7888888876
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.6 Score=36.56 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=82.2
Q ss_pred CCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecC
Q psy9316 61 CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSF 140 (264)
Q Consensus 61 ~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 140 (264)
..++.|+.|..+| +.+++........ .. .+...|..+...+.- +.+++- .|+.++++++..-...........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~--~i--~~~~~I~ql~vl~~~-~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPT--RI--LKLSSITQLSVLPEL-NLLLVL-SDGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccce--eE--eecceEEEEEEeccc-CEEEEE-cCCccEEEEchhhccccccccccc
Confidence 3578999999998 8888873222111 11 233448888888754 444443 359999999875332210000000
Q ss_pred CCcEEEEEeccCCCccceEEEeccccceeeEE-EcC-CCCCEEEEEeCCCcEEEEeCCCCc-----c-eeEeecCceEEE
Q psy9316 141 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC-WHA-TNPDLLSTASGDKTVRIWDARTQK-----S-QIIATKGENINI 212 (264)
Q Consensus 141 d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~-~~~-~~~~~i~s~~~dg~i~iwD~~t~~-----~-~~~~~~~~~~~v 212 (264)
. ..... .........+..++ -.. .+...++ ......|.+|...... . .....+..+..+
T Consensus 78 ~----------~~~~~--~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i 144 (275)
T PF00780_consen 78 P----------KSRSL--PTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSI 144 (275)
T ss_pred c----------ccccc--cccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEEcCCCcEEE
Confidence 0 00000 00001112233333 111 2223444 3445588888776531 1 222335667888
Q ss_pred EEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 213 TWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 213 ~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
+|. ++.+++|..++ ..++|+.++
T Consensus 145 ~~~--~~~i~v~~~~~-f~~idl~~~ 167 (275)
T PF00780_consen 145 AFL--GNKICVGTSKG-FYLIDLNTG 167 (275)
T ss_pred EEe--CCEEEEEeCCc-eEEEecCCC
Confidence 888 88888888666 488898853
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=95.11 E-value=2.8 Score=41.95 Aligned_cols=176 Identities=15% Similarity=0.307 Sum_probs=103.8
Q ss_pred CCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEE----ECC
Q psy9316 52 SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW----DAR 127 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vw----d~~ 127 (264)
+.|.++.|..++..|+.+..+|.|.+-|... ... .+...-...|.+++|+|+. ..++..+.+.++.+= +.-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et---~~~-eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPET---LEL-EIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccc---cce-eeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEeccccch
Confidence 5799999999999999999999999986543 111 1223345668999999955 566666666666542 110
Q ss_pred CCCc---------------------c--------------------------------------eEEEe----ecCC-Cc
Q psy9316 128 TQKS---------------------Q--------------------------------------IMLAS----GSFD-KS 143 (264)
Q Consensus 128 ~~~~---------------------~--------------------------------------~~~~~----~~~d-~~ 143 (264)
..+. + .++++ ...+ +.
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 0000 0 01111 1122 55
Q ss_pred EEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEe---CCCcEEEEeCCCCcce---eEe--ecCceEEEEEc
Q psy9316 144 VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS---GDKTVRIWDARTQKSQ---IIA--TKGENINITWA 215 (264)
Q Consensus 144 i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~---~dg~i~iwD~~t~~~~---~~~--~~~~~~~v~~s 215 (264)
|++|+-+ +.+...- ......-.+++|-|. +..+++.. .|+.|.+|.-+.-++. +.. ...++..++|+
T Consensus 224 irV~drE--g~Lns~s--e~~~~l~~~LsWkPs-gs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 224 IRVYDRE--GALNSTS--EPVEGLQHSLSWKPS-GSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred EEEeccc--chhhccc--CcccccccceeecCC-CCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeec
Confidence 6666643 1111000 000112245889884 45666643 4567888865543321 111 12237789999
Q ss_pred CCCCEEEE---eeCCCeEEEEEccc
Q psy9316 216 PNGNTIAV---GNKEDLVTFIDVVK 237 (264)
Q Consensus 216 p~g~~la~---gs~d~~i~~~d~~~ 237 (264)
.++..||+ ......|++|-+..
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCCCceeeeecccccceEEEEEecC
Confidence 99999999 66677799998653
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.4 Score=39.43 Aligned_cols=136 Identities=10% Similarity=0.090 Sum_probs=76.4
Q ss_pred cEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce-EEE----------eecCCCcEEEEEeccCCC------ccceEE
Q psy9316 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-MLA----------SGSFDKSVAIFALDKKGD------LNKEVV 160 (264)
Q Consensus 98 ~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~----------~~~~d~~i~i~~~~~~~~------~~~~~~ 160 (264)
.|+.+.+.+.. ..|+.|-..|.|-+|.....+... .-. ....++.-.+.|++.... +.+...
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 47788888754 567788899999887654322110 000 001111223344432111 222333
Q ss_pred EeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeec----------CceEEEEEc-----CCC---CEEE
Q psy9316 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK----------GENINITWA-----PNG---NTIA 222 (264)
Q Consensus 161 ~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~----------~~~~~v~~s-----p~g---~~la 222 (264)
+....++|.+++.+ +=.+++.|.++|.+.|.|+|.........- ..+.++.|+ .|+ -.|.
T Consensus 82 ~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 45557899999986 345899999999999999987654322211 134556665 344 5789
Q ss_pred EeeCCCeEEEEEcc
Q psy9316 223 VGNKEDLVTFIDVV 236 (264)
Q Consensus 223 ~gs~d~~i~~~d~~ 236 (264)
+|++.|.+.+|.+.
T Consensus 160 vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 160 VGTNSGNVLTFKIL 173 (395)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EEeCCCCEEEEEEe
Confidence 99999999999875
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.079 Score=42.87 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=37.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCcceeE--eec-CceEEEEEcCCCCEEEEe--eCCCeEEEEEccc
Q psy9316 179 DLLSTASGDKTVRIWDARTQKSQII--ATK-GENINITWAPNGNTIAVG--NKEDLVTFIDVVK 237 (264)
Q Consensus 179 ~~i~s~~~dg~i~iwD~~t~~~~~~--~~~-~~~~~v~~sp~g~~la~g--s~d~~i~~~d~~~ 237 (264)
.+..++++||.|+.|++.-.+..-. .+. ........+..++.++.. |.|.++++|++..
T Consensus 115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 115 SLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 4777889999999999876553211 122 222333344456666666 7777777777653
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.54 E-value=1.2 Score=32.01 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=56.5
Q ss_pred eeEEEeecCceEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEE
Q psy9316 24 QFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103 (264)
Q Consensus 24 ~~~~~~~~d~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~ 103 (264)
.-+++++.|..|+.|...+.+.++..+ +.|.+|.-... .+++.|..+|+|-+|+-.. .. -..+. +..+.+++
T Consensus 16 ~eLlvGs~D~~IRvf~~~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--Rl---WRiKS-K~~~~~~~ 87 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RL---WRIKS-KNQVTSMA 87 (111)
T ss_pred ceEEEecCCcEEEEEeCCcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcc--ee---eeecc-CCCeEEEE
Confidence 335678889999999888887777554 46777776544 6788899999999996432 11 11222 22355555
Q ss_pred EecC---CCCeEEEEeCCCcE
Q psy9316 104 WHAT---NPDLLSTASGDKTV 121 (264)
Q Consensus 104 ~~~~---~~~~l~s~s~dg~i 121 (264)
+... +...|++|=.+|.|
T Consensus 88 ~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 88 FYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred EEcCCCCCceEEEEEecCCeE
Confidence 4322 22355566566654
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.08 Score=50.48 Aligned_cols=68 Identities=13% Similarity=0.279 Sum_probs=55.5
Q ss_pred eeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce--eEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--IIATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 168 i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~--~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
+.++||+|. .-+++.|=+-|.+.+|...+.+.. ...++..+..+.|||+|..|.++-.-|.+.+|...
T Consensus 62 atSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChH-HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 456999985 356778888899999998887642 23456778889999999999999999999999753
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=94.43 E-value=2.5 Score=35.23 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=37.0
Q ss_pred EEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE
Q psy9316 134 MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII 203 (264)
Q Consensus 134 ~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~ 203 (264)
.++.|.+.+.+.+.+.++........... .-.+.+.+ ..++.+|..++.|+..+..|.+++.+.-.
T Consensus 65 fVV~GCy~g~lYfl~~~tGs~~w~f~~~~--~vk~~a~~--d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 65 FVVLGCYSGGLYFLCVKTGSQIWNFVILE--TVKVRAQC--DFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred EEEEEEccCcEEEEEecchhheeeeeehh--hhccceEE--cCCCceEEEecCCCcEEEecccccceEEe
Confidence 35566666666666555432222211110 00111111 12456888999999999999999876433
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.21 Score=40.46 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=52.2
Q ss_pred eecCceEEeccccccccccccCCCCEEEEEEC-CCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecC
Q psy9316 29 CKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWS-CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107 (264)
Q Consensus 29 ~~~d~~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 107 (264)
-+.+++++.++.+...... .....+.++.-- .-+..++.|+.||.|.+|+.+..+..... +..-..++.++--.-+
T Consensus 36 ~sa~~~v~~~~~~k~k~s~-rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~--~~s~~e~i~~~Ip~~~ 112 (238)
T KOG2444|consen 36 TSADGLVRERKVRKHKESC-RSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDR--VCSGEESIDLGIPNGR 112 (238)
T ss_pred ccCCcccccchhhhhhhhh-hhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHh--hhcccccceecccccc
Confidence 4556777665543322111 111122222111 23567888999999999987643332211 1111222322211122
Q ss_pred CCCeEEEEeCCCcEEEEECCCCC
Q psy9316 108 NPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 108 ~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
+..+..+++.||.|+.|++.-.+
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred ccceeEEeccCCceeeeccccCc
Confidence 33478889999999999987544
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=3.8 Score=36.41 Aligned_cols=171 Identities=10% Similarity=0.054 Sum_probs=83.6
Q ss_pred CCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce--------
Q psy9316 62 DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-------- 133 (264)
Q Consensus 62 ~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-------- 133 (264)
++..++.++.++.+..+|..+....-. .+.. ..+.+-... .+ ..++.++.++.+.-+|.++++...
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~---~~~~-~~~~ssP~v-~~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQ---TKVA-GEALSRPVV-SD-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCccc---ccCC-CceecCCEE-EC-CEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 356777788899999888754322111 1111 111110001 12 355567778888888877654321
Q ss_pred --------------EEEeecCCCcEEEEEeccCCCccceEEEe---ccc-cceeeEEEcCC-CCCEEEEEeCCCcEEEEe
Q psy9316 134 --------------MLASGSFDKSVAIFALDKKGDLNKEVVYR---GHT-GSVDQLCWHAT-NPDLLSTASGDKTVRIWD 194 (264)
Q Consensus 134 --------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~---~h~-~~i~~i~~~~~-~~~~i~s~~~dg~i~iwD 194 (264)
.+..+..++.+..++.............. .+. .....+..+|. ....+..++.+|.+.-+|
T Consensus 193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 12233445555444443222111100000 000 00111111221 123455567899999999
Q ss_pred CCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 195 ARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 195 ~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
+.+++..-.........+ ...+..+.+++.++.++-+|..++..
T Consensus 273 ~~tG~~~W~~~~~~~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 273 LRSGQIVWKREYGSVNDF--AVDGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred CCCCCEEEeecCCCccCc--EEECCEEEEEcCCCeEEEEECCCCcE
Confidence 998875332221211111 22466677777788888888766543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.16 E-value=3.9 Score=36.34 Aligned_cols=153 Identities=20% Similarity=0.209 Sum_probs=92.0
Q ss_pred EEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEe--CCCcEEEEECCCCC
Q psy9316 54 VHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS--GDKTVRIWDARTQK 130 (264)
Q Consensus 54 V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s--~dg~i~vwd~~~~~ 130 (264)
-..+..++.+..++... .++.|.+.|....... .....+. ....+.+.++++.+.++-. .++++.+.|..+.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~--~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL--GSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCccccee--eEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 34677888888666544 4578998885432211 1111222 4456777776655554444 35677777765543
Q ss_pred cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee------Ee
Q psy9316 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI------IA 204 (264)
Q Consensus 131 ~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~------~~ 204 (264)
....+ +.+ ..+ ..+.+.|.+...+++-..++.+.+.|..+..... ..
T Consensus 152 ~~~~~-------------------------~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~ 204 (381)
T COG3391 152 VTATI-------------------------PVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG 204 (381)
T ss_pred EEEEE-------------------------ecC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc
Confidence 22111 111 123 4577888776677777789999999977765432 11
Q ss_pred ecCceEEEEEcCCCCEEEEeeCC---CeEEEEEccc
Q psy9316 205 TKGENINITWAPNGNTIAVGNKE---DLVTFIDVVK 237 (264)
Q Consensus 205 ~~~~~~~v~~sp~g~~la~gs~d---~~i~~~d~~~ 237 (264)
.......+.++|+|+++.+.... +.+...|...
T Consensus 205 ~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 205 VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 12234568999999977555444 4888888765
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=4.4 Score=36.00 Aligned_cols=119 Identities=7% Similarity=-0.012 Sum_probs=65.4
Q ss_pred CeEEEEeCCCcEEEEECCCCCcce---------------EEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEc
Q psy9316 110 DLLSTASGDKTVRIWDARTQKSQI---------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 174 (264)
Q Consensus 110 ~~l~s~s~dg~i~vwd~~~~~~~~---------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~ 174 (264)
..++.++.+|.+..+|+.+++... .+..++.++.+..++............. .+. .......
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~~-~~~sp~v- 333 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-LHR-LLTAPVL- 333 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEccccc-CCC-cccCCEE-
Confidence 355567788999888887765321 1233445666665555332211110000 000 0111111
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCcceeEee-c-CceEE-EEEcCCCCEEEEeeCCCeEEEEEc
Q psy9316 175 ATNPDLLSTASGDKTVRIWDARTQKSQIIAT-K-GENIN-ITWAPNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 175 ~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~-~-~~~~~-v~~sp~g~~la~gs~d~~i~~~d~ 235 (264)
....++.++.+|.+.+.|..+++...... . ..+.+ ..+ .+..|.+++.||.++.+++
T Consensus 334 --~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 --YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred --ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 13466678899999999999987533322 1 22211 122 3568888999999998874
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.88 E-value=1.7 Score=36.68 Aligned_cols=211 Identities=17% Similarity=0.212 Sum_probs=98.5
Q ss_pred cCCCCCceEeecCC-CeeEEEeecCceEEeccccccc---cccccCCCCEEEEEECCCCCeEEEEECCCcEEEE-EeccC
Q psy9316 9 HTPKSPEYKLLPSG-SQFHLVCKIDDYVKHFNTHNDI---KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKK 83 (264)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~---~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~-~~~~~ 83 (264)
|+-|||+++++=.. +.+. .-.|.|.+|+..+.+ -+|..|.-.-..+.|.+||+.++.+ +|-|..- +....
T Consensus 118 HGvfs~dG~~LYATEndfd---~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIethpdfgR~ 192 (366)
T COG3490 118 HGVFSPDGRLLYATENDFD---PNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETHPDFGRT 192 (366)
T ss_pred ccccCCCCcEEEeecCCCC---CCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe--CCceecccccCcc
Confidence 55667777665432 2221 235567777665543 3567787778899999999999876 3434433 11000
Q ss_pred ----CCCcccEE-EecccccEEeEEEecC-----CCCeEEEEeCCCcEEEE-ECCCC--CcceEEEeecCCCcEEEEEec
Q psy9316 84 ----GDLNKEVV-YRGHTGSVDQLCWHAT-----NPDLLSTASGDKTVRIW-DARTQ--KSQIMLASGSFDKSVAIFALD 150 (264)
Q Consensus 84 ----~~~~~~~~-~~~h~~~v~~i~~~~~-----~~~~l~s~s~dg~i~vw-d~~~~--~~~~~~~~~~~d~~i~i~~~~ 150 (264)
..++...+ +..-++.+..=.-.|. .-+.+ .-+.||+|-.= ..+.. ....++..-...+.++..++.
T Consensus 193 ~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl-d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~p 271 (366)
T COG3490 193 ELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL-DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLP 271 (366)
T ss_pred ccchhhcCccEEEEeccccchhhhccCchhhhhcceeee-eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCC
Confidence 01111111 1111111100000010 00112 23344444221 11111 111122222222333333321
Q ss_pred cCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCeE
Q psy9316 151 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLV 230 (264)
Q Consensus 151 ~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i 230 (264)
.. +.......|-+|+.+-..+-..+|.=..+...+||..++............. ..+.+.-+++.|.+|.+
T Consensus 272 ee-------~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaG--va~~~~gf~vssg~G~~ 342 (366)
T COG3490 272 EE-------QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAG--VAAAKGGFAVSSGQGRI 342 (366)
T ss_pred HH-------HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccccccc--ceeccCceEEecCCceE
Confidence 11 1112234566677765444455555566777899999998643332222222 33556667777888888
Q ss_pred EEEE
Q psy9316 231 TFID 234 (264)
Q Consensus 231 ~~~d 234 (264)
.++.
T Consensus 343 ~~~s 346 (366)
T COG3490 343 IFYS 346 (366)
T ss_pred Eecc
Confidence 8873
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=93.76 E-value=4 Score=35.12 Aligned_cols=166 Identities=13% Similarity=0.180 Sum_probs=89.7
Q ss_pred CCeEEEEEC----------CCcEEEEEeccCCC--CcccEE-EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC
Q psy9316 63 GRRLASGSF----------DKSVAIFALDKKGD--LNKEVV-YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 129 (264)
Q Consensus 63 g~~l~s~s~----------dg~i~v~~~~~~~~--~~~~~~-~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~ 129 (264)
..+|+.|.. .|.|.+|++...+. .+...+ -....++|++++-. ++. ++ .+..+.+.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv-~~~g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LV-VAVGNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EE-EEETTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EE-EeecCEEEEEEccCc
Confidence 466776642 28899999876311 111111 12457889998765 334 43 344689999998766
Q ss_pred C-cc------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcE
Q psy9316 130 K-SQ------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 190 (264)
Q Consensus 130 ~-~~------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i 190 (264)
+ .. ..++.|....++.++..+..+..............+.++.+-++. +.++.+..+|.+
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl 196 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNL 196 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEE
T ss_pred ccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeE
Confidence 5 11 145667777778877665422211111111123357777776544 488889999999
Q ss_pred EEEeCCCC---------cce--eEeec-CceEEE---EEcC--CCC------EEEEeeCCCeEEEE
Q psy9316 191 RIWDARTQ---------KSQ--IIATK-GENINI---TWAP--NGN------TIAVGNKEDLVTFI 233 (264)
Q Consensus 191 ~iwD~~t~---------~~~--~~~~~-~~~~~v---~~sp--~g~------~la~gs~d~~i~~~ 233 (264)
.++..... ... ...+. ..+.++ ++.| .+. .++.++.+|.|...
T Consensus 197 ~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 197 FVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 99976521 111 11222 335555 4445 222 48888889988844
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=93.02 E-value=9.6 Score=37.28 Aligned_cols=173 Identities=13% Similarity=0.228 Sum_probs=102.0
Q ss_pred cCCCCEEEEEEC---C----CCCeEEEEECCCcEEEEEeccC----------CCCcccEE--Eecc---cccEEeEEEec
Q psy9316 49 AHGSKVHSVAWS---C----DGRRLASGSFDKSVAIFALDKK----------GDLNKEVV--YRGH---TGSVDQLCWHA 106 (264)
Q Consensus 49 ~h~~~V~~l~~s---~----~g~~l~s~s~dg~i~v~~~~~~----------~~~~~~~~--~~~h---~~~v~~i~~~~ 106 (264)
.-..+|..|.|. . ..++|+. -....+.|+..... ..+....+ +..+ ..+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999998 2 1235544 45566777761111 11111111 1111 23567889999
Q ss_pred CCCCeEEEEeCCCcEEEEECCCCC---cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEE
Q psy9316 107 TNPDLLSTASGDKTVRIWDARTQK---SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST 183 (264)
Q Consensus 107 ~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s 183 (264)
.+...|+.....|...+||+.... .....+.....|.| ++|.. ..+....|.|.+....+|+
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi-~~d~~-------------e~s~w~rI~W~~~~~~lLv- 220 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI-IFDPE-------------ELSNWKRILWVSDSNRLLV- 220 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc-cCCCc-------------ccCcceeeEecCCCCEEEE-
Confidence 888899999999999999993211 11222333333444 22211 1145677899876555555
Q ss_pred EeCCCcEEEEeCCCCccee-Ee---ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 184 ASGDKTVRIWDARTQKSQI-IA---TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 184 ~~~dg~i~iwD~~t~~~~~-~~---~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
+....+.++|+++..... .. ....+..+.-+|...-.+..-....|.++|+...
T Consensus 221 -~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~ 278 (765)
T PF10214_consen 221 -CNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSS 278 (765)
T ss_pred -EcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccCC
Confidence 568899999999876422 11 2245778888887443333444678888888764
|
These proteins are found in fungi. |
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.42 Score=46.86 Aligned_cols=66 Identities=26% Similarity=0.276 Sum_probs=45.2
Q ss_pred CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEeccccc---EEeEEEecCCCCeEEEEeCCCc
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS---VDQLCWHATNPDLLSTASGDKT 120 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~---v~~i~~~~~~~~~l~s~s~dg~ 120 (264)
.++|.+++|+.+|+.++.|-.+|.|.+||+....... .+..|..+ |..+.+..++ ..++++...|.
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~---~i~e~~ap~t~vi~v~~t~~n-S~llt~D~~Gs 198 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK---VITEHGAPVTGVIFVGRTSQN-SKLLTSDTGGS 198 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCccee---eeeecCCccceEEEEEEeCCC-cEEEEccCCCc
Confidence 4689999999999999999999999999987533222 23334333 3344444433 46666666665
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.67 Score=27.17 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=26.7
Q ss_pred ccEEeEEEecCCC--CeEEEEeCCCcEEEEECCC
Q psy9316 97 GSVDQLCWHATNP--DLLSTASGDKTVRIWDART 128 (264)
Q Consensus 97 ~~v~~i~~~~~~~--~~l~s~s~dg~i~vwd~~~ 128 (264)
+.|.++.|+|... ++|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3578899997665 7888888899999999985
|
It contains a characteristic DLL sequence motif. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=92.60 E-value=1.4 Score=41.36 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=39.9
Q ss_pred CCcEEEEeCCC----C-cce-eEeecCceEEEEEcCCCCEEEEe-eCCCeEEEEEcccCC
Q psy9316 187 DKTVRIWDART----Q-KSQ-IIATKGENINITWAPNGNTIAVG-NKEDLVTFIDVVKSL 239 (264)
Q Consensus 187 dg~i~iwD~~t----~-~~~-~~~~~~~~~~v~~sp~g~~la~g-s~d~~i~~~d~~~~~ 239 (264)
++.|.+.|.++ . ... .......+..+++||||+++.++ ..++.+.++|+.+..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 67899999998 2 222 23345567889999999988555 559999999998744
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.58 Score=27.45 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=27.8
Q ss_pred ceEEEEEcC-CC--CEEEEeeCCCeEEEEEcccCCCCCC
Q psy9316 208 ENINITWAP-NG--NTIAVGNKEDLVTFIDVVKSLPPRE 243 (264)
Q Consensus 208 ~~~~v~~sp-~g--~~la~gs~d~~i~~~d~~~~~~~~~ 243 (264)
.+-++.||| .+ +.|+.....+.+.++|++..-..+|
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~~~Q 40 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFMRRQ 40 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCccceE
Confidence 456789997 44 6999999999999999986444333
|
It contains a characteristic DLL sequence motif. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=92.44 E-value=7.9 Score=34.86 Aligned_cols=158 Identities=8% Similarity=0.117 Sum_probs=82.5
Q ss_pred CCCeEEEEECCCcEEEEEeccCCCCcccEEEe-cccccEEeEEEec---CCCCeEEEEeCCCcEEEEECCCCCcceEEEe
Q psy9316 62 DGRRLASGSFDKSVAIFALDKKGDLNKEVVYR-GHTGSVDQLCWHA---TNPDLLSTASGDKTVRIWDARTQKSQIMLAS 137 (264)
Q Consensus 62 ~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~---~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 137 (264)
+...|+.||..|.++||+-...+.......++ .-..+|..+...+ ......++.=--..+.+|.+......
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~----- 110 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT----- 110 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC-----
Confidence 45799999999999999875433221122233 2356788876532 11111111222333344443110000
Q ss_pred ecCCCcEEEEEeccCCCccceEEEecc--ccceeeEEEcCCC----CCEEEEEeCCCcEEEEeCCCCcceeEeecC-ceE
Q psy9316 138 GSFDKSVAIFALDKKGDLNKEVVYRGH--TGSVDQLCWHATN----PDLLSTASGDKTVRIWDARTQKSQIIATKG-ENI 210 (264)
Q Consensus 138 ~~~d~~i~i~~~~~~~~~~~~~~~~~h--~~~i~~i~~~~~~----~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~-~~~ 210 (264)
. ..|.- +.+ .....| +.....++.-|.+ .++|..=+.||++.||+-+........... -+-
T Consensus 111 ~-~~g~~--~~L---------~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPg 178 (418)
T PF14727_consen 111 V-EHGNQ--YQL---------ELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPG 178 (418)
T ss_pred c-ccCcE--EEE---------EEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCc
Confidence 0 00000 000 011111 1123334444432 467777889999999988765432221111 122
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 211 NITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 211 ~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
-+.|.|.-+.+++++.+..+.-|.-.
T Consensus 179 Pl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 179 PLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CeEEeecCCEEEEecCceeEEEecHH
Confidence 47899999999999999999888754
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=92.19 E-value=3.2 Score=40.37 Aligned_cols=123 Identities=13% Similarity=0.157 Sum_probs=69.1
Q ss_pred ccccccccccCCCC-EEEEEECCC-------CCeEEEEECCCcEEEEEeccCCCC-cc--cEEEecccccEEeEEEecCC
Q psy9316 40 THNDIKEYQAHGSK-VHSVAWSCD-------GRRLASGSFDKSVAIFALDKKGDL-NK--EVVYRGHTGSVDQLCWHATN 108 (264)
Q Consensus 40 ~~~~~~~~~~h~~~-V~~l~~s~~-------g~~l~s~s~dg~i~v~~~~~~~~~-~~--~~~~~~h~~~v~~i~~~~~~ 108 (264)
.++.+.++..|... |.. +.|+ ....+.|-.+..+..||....+.. .. ...+ .......|++-. .
T Consensus 513 ~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt--~ 587 (794)
T PF08553_consen 513 RGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATT--E 587 (794)
T ss_pred CCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEec--C
Confidence 35666777766543 444 3343 335567778888999987654411 10 0111 233445555543 3
Q ss_pred CCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCC
Q psy9316 109 PDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 188 (264)
Q Consensus 109 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg 188 (264)
.-+++.||.+|.||+||-- ++. ....+.+--.+|..|+.+.++ .+|++ ..+.
T Consensus 588 ~G~iavgs~~G~IRLyd~~-g~~-------------------------AKT~lp~lG~pI~~iDvt~DG-kwila-Tc~t 639 (794)
T PF08553_consen 588 DGYIAVGSNKGDIRLYDRL-GKR-------------------------AKTALPGLGDPIIGIDVTADG-KWILA-TCKT 639 (794)
T ss_pred CceEEEEeCCCcEEeeccc-chh-------------------------hhhcCCCCCCCeeEEEecCCC-cEEEE-eecc
Confidence 3477889999999999832 111 111222334678888877654 44443 3366
Q ss_pred cEEEEeC
Q psy9316 189 TVRIWDA 195 (264)
Q Consensus 189 ~i~iwD~ 195 (264)
.+-++|.
T Consensus 640 yLlLi~t 646 (794)
T PF08553_consen 640 YLLLIDT 646 (794)
T ss_pred eEEEEEE
Confidence 7777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.75 E-value=12 Score=35.42 Aligned_cols=160 Identities=15% Similarity=0.194 Sum_probs=82.1
Q ss_pred CCEEEEEECCCCCeEEEEE------CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCC-CcEEEE
Q psy9316 52 SKVHSVAWSCDGRRLASGS------FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-KTVRIW 124 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s------~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~d-g~i~vw 124 (264)
..+...+++|+|+.++..- .|..-.+|-....+... ....+. ....-.|+|++. .+.+.+.. ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~--~lt~g~--~~t~PsWspDG~-~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAV--QVLEGH--SLTRPSWSLDAD-AVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcce--eeecCC--CCCCceECCCCC-ceEEEecCcceEEEe
Confidence 4678899999999988765 24444555443322221 112222 356678998654 44333321 222332
Q ss_pred ECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEE---EeCCCCcce
Q psy9316 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI---WDARTQKSQ 201 (264)
Q Consensus 125 d~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~i---wD~~t~~~~ 201 (264)
+-. ..+.+.+...+. +.... .....|..+.|+|++..+.+.. +|.|.+ -....++..
T Consensus 425 ~~~------------~~gql~~~~vd~-ge~~~-----~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~ 484 (591)
T PRK13616 425 RDP------------ATGQLARTPVDA-SAVAS-----RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYA 484 (591)
T ss_pred ccC------------CCceEEEEeccC-chhhh-----ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCcee
Confidence 211 122232223221 11111 2235799999999765554433 577776 333344321
Q ss_pred e-----E-eec-CceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 202 I-----I-ATK-GENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 202 ~-----~-~~~-~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
+ . ... ..+.+++|.+++..+ ++..++-..+|-+.-
T Consensus 485 l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~v 526 (591)
T PRK13616 485 LTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNL 526 (591)
T ss_pred ecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEec
Confidence 1 1 111 235779999999855 555555555666553
|
|
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.033 Score=49.89 Aligned_cols=140 Identities=17% Similarity=0.243 Sum_probs=92.7
Q ss_pred CCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC
Q psy9316 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 129 (264)
Q Consensus 50 h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~ 129 (264)
|-.......|-|.+..++.++.+..+..||-. +..... ...++...+++|+.+++..++.+-..+.+.+||+++.
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~a--gq~~le---~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~e 107 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKA--GQVILE---LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE 107 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhh--cceecc---cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhh
Confidence 33444556788888889999999999999743 222111 1245667788998877677777788999999999764
Q ss_pred Ccc-------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcE
Q psy9316 130 KSQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 190 (264)
Q Consensus 130 ~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i 190 (264)
..+ ...+.|...+.+.|+..... +.......|..++.+++|.+. ++.+.++.|..+
T Consensus 108 ytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts---R~iiv~Gkh~RRgtq~av~lE--d~vil~dcd~~L 182 (615)
T KOG2247|consen 108 YTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS---RRIIVMGKHQRRGTQIAVTLE--DYVILCDCDNTL 182 (615)
T ss_pred hHHHHhccCcchHHHHhhccCCccccccccccceEEEeccch---hhhhhhcccccceeEEEeccc--ceeeecCcHHHH
Confidence 322 13455666677777754322 222222348889999999874 467778888887
Q ss_pred EEEeCCCCc
Q psy9316 191 RIWDARTQK 199 (264)
Q Consensus 191 ~iwD~~t~~ 199 (264)
.+-..++..
T Consensus 183 ~v~~qeget 191 (615)
T KOG2247|consen 183 SVTTQEGET 191 (615)
T ss_pred HHhhhccce
Confidence 776555443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.98 E-value=10 Score=33.08 Aligned_cols=178 Identities=17% Similarity=0.109 Sum_probs=89.2
Q ss_pred EEEECCCCCeEEEE--ECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCC-CCcc
Q psy9316 56 SVAWSCDGRRLASG--SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART-QKSQ 132 (264)
Q Consensus 56 ~l~~s~~g~~l~s~--s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~ 132 (264)
.++++.|+++++.- +--.+|.|.|+....... + + ..-.+. ...|.+++-+.+-|.||.+-...+.. ++..
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~-e--i--~~PGC~--~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVG-E--I--DTPGCW--LIYPSGNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEE-E--E--EGTSEE--EEEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceee-e--e--cCCCEE--EEEecCCCceEEEecCCceEEEEECCCCCEe
Confidence 45677788777653 334567777765432111 1 1 111111 22344556677888899887776653 2211
Q ss_pred e------------------------EEEeecCCCcEEEEEeccCCCcc-ceEEEe--c------cccceeeEEEcCCCCC
Q psy9316 133 I------------------------MLASGSFDKSVAIFALDKKGDLN-KEVVYR--G------HTGSVDQLCWHATNPD 179 (264)
Q Consensus 133 ~------------------------~~~~~~~d~~i~i~~~~~~~~~~-~~~~~~--~------h~~~i~~i~~~~~~~~ 179 (264)
. .+.-.+++|.+.-.+++...... ...... . -.++...+++++..+.
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 0 11113456666655554322100 000000 0 0123344677765444
Q ss_pred EEEEEe-------CCCc--EEEEeCCCCcceeEe-ecCceEEEEEcCCCC-EEEEe-eCCCeEEEEEcccCCC
Q psy9316 180 LLSTAS-------GDKT--VRIWDARTQKSQIIA-TKGENINITWAPNGN-TIAVG-NKEDLVTFIDVVKSLP 240 (264)
Q Consensus 180 ~i~s~~-------~dg~--i~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~-~la~g-s~d~~i~~~d~~~~~~ 240 (264)
+++... .|+. |-++|+.+++..... ....+.+|..+.+.+ .|.+. ..++.+.+||..++..
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 444322 2344 445588887753333 344566899998887 55443 4578999999887543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.86 E-value=9.3 Score=32.51 Aligned_cols=181 Identities=14% Similarity=0.181 Sum_probs=95.6
Q ss_pred cccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEEC
Q psy9316 47 YQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 126 (264)
Q Consensus 47 ~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~ 126 (264)
..+-.+.|.+|.|+|+.+.|++......-.|+ +.+.|......-+.+ -...-.+.+.. +++++++--++..+.++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVE-lt~~GdlirtiPL~g-~~DpE~Ieyig-~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVE-LTKEGDLIRTIPLTG-FSDPETIEYIG-GNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEE-EecCCceEEEecccc-cCChhHeEEec-CCEEEEEehhcceEEEEEE
Confidence 34556679999999999999988766554443 555554332211222 12233445543 3355555556777777655
Q ss_pred CCCCcce-----EE------------------------EeecCCCcEEEEEeccCCCccceEEEecc-------ccceee
Q psy9316 127 RTQKSQI-----ML------------------------ASGSFDKSVAIFALDKKGDLNKEVVYRGH-------TGSVDQ 170 (264)
Q Consensus 127 ~~~~~~~-----~~------------------------~~~~~d~~i~i~~~~~~~~~~~~~~~~~h-------~~~i~~ 170 (264)
....... .+ ..+-.-..+.||................+ -..|..
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 4432111 11 11111122334333211100000000011 123566
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeec----------CceEEEEEcCCCCEEEEeeCCCeE
Q psy9316 171 LCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK----------GENINITWAPNGNTIAVGNKEDLV 230 (264)
Q Consensus 171 i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~----------~~~~~v~~sp~g~~la~gs~d~~i 230 (264)
+.|++..+.+++-+.+++.+.-.|............ .....|+..++|+...++..+.+-
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlfy 307 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLFY 307 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCcce
Confidence 788877777888888888888888876543222211 123468888888888777655553
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=90.61 E-value=4.9 Score=40.18 Aligned_cols=68 Identities=12% Similarity=0.293 Sum_probs=50.5
Q ss_pred eeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 169 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--TKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 169 ~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.++.|+|.-....+.+..|+.|++.-+.-....... ......+++|+|.|+.+++|-++|++.-|...
T Consensus 159 ~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 159 LKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred ccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 457888876666677788999999866543322222 23346789999999999999999999998754
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=90.12 E-value=13 Score=32.85 Aligned_cols=159 Identities=14% Similarity=0.174 Sum_probs=76.0
Q ss_pred CCEEEEEECCCCCeEEEEE-----------CCC-cEEEEE-eccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCC
Q psy9316 52 SKVHSVAWSCDGRRLASGS-----------FDK-SVAIFA-LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD 118 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s-----------~dg-~i~v~~-~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~d 118 (264)
.....++|+++|+..++-. ..+ .|.+++ .+..+......++...-.....+++.+.+ +++ ++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEE-eCCC
Confidence 3456788999998776642 123 566664 22233333323343333345777777643 443 4444
Q ss_pred CcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeC------------
Q psy9316 119 KTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG------------ 186 (264)
Q Consensus 119 g~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~------------ 186 (264)
...++.|.+.... .|+...+..-..... ...+....+.+.|.|++ .+.++.+.
T Consensus 91 ~i~~~~d~~gdg~--------ad~~~~~l~~~~~~~------~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~ 155 (367)
T TIGR02604 91 DILFLRDKDGDDK--------ADGEREVLLSGFGGQ------INNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTS 155 (367)
T ss_pred eEEEEeCCCCCCC--------CCCccEEEEEccCCC------CCcccccccCceECCCC-CEEEecccCCCceeccCCCc
Confidence 4444445542110 011111110000000 00012245667777754 34333331
Q ss_pred -------CCcEEEEeCCCCcceeEeec-CceEEEEEcCCCCEEEEeeCCC
Q psy9316 187 -------DKTVRIWDARTQKSQIIATK-GENINITWAPNGNTIAVGNKED 228 (264)
Q Consensus 187 -------dg~i~iwD~~t~~~~~~~~~-~~~~~v~~sp~g~~la~gs~d~ 228 (264)
.|.|.-+|..+......... .....++|+|+|+.+++-..++
T Consensus 156 ~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~ 205 (367)
T TIGR02604 156 DESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDDP 205 (367)
T ss_pred cCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCCC
Confidence 14566666665554333322 2246799999999987765443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=90.07 E-value=2.5 Score=41.78 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=47.6
Q ss_pred CCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc
Q psy9316 62 DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 132 (264)
Q Consensus 62 ~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 132 (264)
.+-.|+.|+..|.+-.+|... +......=+.-.++|++++|+. ++.+++.|=.+|.|.+||+..++..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~--nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTG--NLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKIL 165 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhc--ccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcce
Confidence 466788888888888887653 2221111112357899999986 5578888889999999999876543
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=90.01 E-value=1.9 Score=35.18 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=41.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcceeEe----------------ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 178 PDLLSTASGDKTVRIWDARTQKSQIIA----------------TKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 178 ~~~i~s~~~dg~i~iwD~~t~~~~~~~----------------~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
+.++++.+.+|.+++||+.+++..... ....+..+.++.+|.-+++=+ +|..+.|+..
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 456777899999999999987632211 112356778888888776665 5778999843
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.54 E-value=4.4 Score=38.83 Aligned_cols=103 Identities=16% Similarity=0.232 Sum_probs=66.9
Q ss_pred CeeEEEeecCceEEecccccccc--------------------cccc-CCCCEEEEEEC--CCCCeEEEEECCCcEEEEE
Q psy9316 23 SQFHLVCKIDDYVKHFNTHNDIK--------------------EYQA-HGSKVHSVAWS--CDGRRLASGSFDKSVAIFA 79 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~~~~~~--------------------~~~~-h~~~V~~l~~s--~~g~~l~s~s~dg~i~v~~ 79 (264)
...++.|.-||.+-.|.+...+. .|.. -...++.|+++ ...++||.++....|.||-
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 44556788999988875432211 1111 23468899998 7788888888888888887
Q ss_pred eccC-CCCcccEEEecccccEEeEEEecCC--CC---eEEEEeCCCcEEEEEC
Q psy9316 80 LDKK-GDLNKEVVYRGHTGSVDQLCWHATN--PD---LLSTASGDKTVRIWDA 126 (264)
Q Consensus 80 ~~~~-~~~~~~~~~~~h~~~v~~i~~~~~~--~~---~l~s~s~dg~i~vwd~ 126 (264)
+... ....... -..|...|-+++|.+.+ +. .+++++-.|.+-+|++
T Consensus 194 f~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred Eecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6642 1111100 11356678899997644 22 7778888999988877
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=89.17 E-value=0.28 Score=47.27 Aligned_cols=66 Identities=17% Similarity=0.287 Sum_probs=45.8
Q ss_pred EECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECC
Q psy9316 58 AWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 127 (264)
Q Consensus 58 ~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~ 127 (264)
.|-++.-++..+-.+++|++...+... . ..+.+|...+.+++|...+-..+.+-|-||++..|-..
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~--~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~ 255 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRAL--R--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS 255 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHH--H--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeec
Confidence 344466777788889999998776422 1 23567988888888876665566667778877777653
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=89.02 E-value=2.7 Score=39.16 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=41.1
Q ss_pred CCCCeEEEEECCCcEEEEEecc---CCCCcccEEEecc--------------------cccEEeEEEec---CCCCeEEE
Q psy9316 61 CDGRRLASGSFDKSVAIFALDK---KGDLNKEVVYRGH--------------------TGSVDQLCWHA---TNPDLLST 114 (264)
Q Consensus 61 ~~g~~l~s~s~dg~i~v~~~~~---~~~~~~~~~~~~h--------------------~~~v~~i~~~~---~~~~~l~s 114 (264)
++...++.+..||.+....... .+..-....+..+ ...+..+..+. .+..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4677888889999998888764 2111111111111 12334444443 24578889
Q ss_pred EeCCCcEEEEECCCCCc
Q psy9316 115 ASGDKTVRIWDARTQKS 131 (264)
Q Consensus 115 ~s~dg~i~vwd~~~~~~ 131 (264)
.+.|+++|+||+++++.
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999998775
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=87.76 E-value=6.9 Score=37.88 Aligned_cols=78 Identities=23% Similarity=0.426 Sum_probs=51.5
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccC----CCC---cccEE----------E-ecccccEEeEEEecCC--CCeE
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKK----GDL---NKEVV----------Y-RGHTGSVDQLCWHATN--PDLL 112 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~----~~~---~~~~~----------~-~~h~~~v~~i~~~~~~--~~~l 112 (264)
.|..+.++|.|++|+..|..|.+. -.+-.. +.. ..... + ......|..+.|||.. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V-~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVV-LELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEE-EEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 588999999999999988866443 333211 111 01111 1 1234578999999974 3466
Q ss_pred EEEeCCCcEEEEECCCCCc
Q psy9316 113 STASGDKTVRIWDARTQKS 131 (264)
Q Consensus 113 ~s~s~dg~i~vwd~~~~~~ 131 (264)
+.-..|+++|+||+.....
T Consensus 165 ~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred EEEecCCEEEEEecCCCCC
Confidence 6778899999999975443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=86.68 E-value=2.5 Score=29.20 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=30.5
Q ss_pred EEeCCCcEEEEeCCCCcceeE-eecCceEEEEEcCCCCEEEEee
Q psy9316 183 TASGDKTVRIWDARTQKSQII-ATKGENINITWAPNGNTIAVGN 225 (264)
Q Consensus 183 s~~~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~gs 225 (264)
.+...|.+.-||..+++.... .....++.|+++||+++|+++.
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 345678999999999986443 3456788999999999887774
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=86.44 E-value=13 Score=34.29 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=48.2
Q ss_pred ccccccccccCCCCEEEEEECCCCCe-------EEEEECCCcEEEEEeccCCCCcccEEEecc----cccEEeEEEecCC
Q psy9316 40 THNDIKEYQAHGSKVHSVAWSCDGRR-------LASGSFDKSVAIFALDKKGDLNKEVVYRGH----TGSVDQLCWHATN 108 (264)
Q Consensus 40 ~~~~~~~~~~h~~~V~~l~~s~~g~~-------l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h----~~~v~~i~~~~~~ 108 (264)
.++.+.+..-|.. |+-+.+.|+.+. =+.|-.|..|.-||....+.-. ...-++| .....|.+ ...
T Consensus 365 ~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k-l~~~q~kqy~~k~nFsc~a--TT~ 440 (644)
T KOG2395|consen 365 RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK-LAVVQSKQYSTKNNFSCFA--TTE 440 (644)
T ss_pred cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce-eeeeeccccccccccceee--ecC
Confidence 4566677776766 777778886642 2345677888888865433211 1111122 12233333 234
Q ss_pred CCeEEEEeCCCcEEEEEC
Q psy9316 109 PDLLSTASGDKTVRIWDA 126 (264)
Q Consensus 109 ~~~l~s~s~dg~i~vwd~ 126 (264)
.-+++.||.+|.||+||-
T Consensus 441 sG~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 441 SGYIVVGSLKGDIRLYDR 458 (644)
T ss_pred CceEEEeecCCcEEeehh
Confidence 457778888888888885
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=86.10 E-value=23 Score=31.02 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=29.7
Q ss_pred EEEcCCCCCEEEEEeCCC----cEEEEeCC-CCcceeEeecCce-EEEEEcCCCCEEEEee
Q psy9316 171 LCWHATNPDLLSTASGDK----TVRIWDAR-TQKSQIIATKGEN-INITWAPNGNTIAVGN 225 (264)
Q Consensus 171 i~~~~~~~~~i~s~~~dg----~i~iwD~~-t~~~~~~~~~~~~-~~v~~sp~g~~la~gs 225 (264)
+.|++.+..++.++..++ .++.-++. .+........... ..+.|||+|++++.-+
T Consensus 286 ~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 286 LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 455555555555555433 44444666 4443222222222 5899999999886654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.95 E-value=6 Score=35.74 Aligned_cols=167 Identities=16% Similarity=0.166 Sum_probs=88.2
Q ss_pred cccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec-cc---ccEE-eEEEecCCCCeEEEEeCCCcE
Q psy9316 47 YQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG-HT---GSVD-QLCWHATNPDLLSTASGDKTV 121 (264)
Q Consensus 47 ~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~-h~---~~v~-~i~~~~~~~~~l~s~s~dg~i 121 (264)
+..--+.|..+-..|||+.+..-+- .++.++++++..- ......+. .. ..|+ .+..- .++.-++.++.||-|
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l-~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~dG~v 292 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSL-QIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHEDGLV 292 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeeccccc-chhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCCCce
Confidence 4334456778889999998887543 6788888875321 11111111 11 1111 01001 133455667888888
Q ss_pred EEE-ECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcC-CCCCEEEEEeCCCcEEEEeCCCCc
Q psy9316 122 RIW-DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA-TNPDLLSTASGDKTVRIWDARTQK 199 (264)
Q Consensus 122 ~vw-d~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~-~~~~~i~s~~~dg~i~iwD~~t~~ 199 (264)
.-| |++......+ .-++.+ +--..++..+. | .+.+-+++-+..|++.++-.-+.+
T Consensus 293 sQWFdvr~~~~p~l-------~h~R~f--------------~l~pa~~~~l~--pe~~rkgF~~l~~~G~L~~f~st~~~ 349 (733)
T COG4590 293 SQWFDVRRDGQPHL-------NHIRNF--------------KLAPAEVQFLL--PETNRKGFYSLYRNGTLQSFYSTSEK 349 (733)
T ss_pred eeeeeeecCCCCcc-------eeeecc--------------ccCcccceeec--cccccceEEEEcCCCceeeeecccCc
Confidence 776 5553221100 000111 10112333222 3 244556777888888877444333
Q ss_pred ceeE-eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 200 SQII-ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 200 ~~~~-~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
.... ..-..+.-+++||++.++++-. .+.++++.+.+..+
T Consensus 350 ~lL~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 350 LLLFERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred ceehhhhhcCcceeeeCcccchheeec-CCceEEEEecCCCC
Confidence 2221 1122344588999999998765 67789998876433
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=85.70 E-value=7.6 Score=32.34 Aligned_cols=73 Identities=11% Similarity=0.180 Sum_probs=50.9
Q ss_pred ccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeec--CceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 165 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK--GENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 165 ~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~--~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
...+..|+|+|++..+++.....+.|..+|...+........ +....|++.-++.++++.-.++.+.++++..
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 345888999998778888888999998888764332222222 3467899988888888777799999999843
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.53 E-value=8.6 Score=36.09 Aligned_cols=23 Identities=4% Similarity=0.070 Sum_probs=16.0
Q ss_pred CCCEEEEEeCCC--cEEEEeCCCCc
Q psy9316 177 NPDLLSTASGDK--TVRIWDARTQK 199 (264)
Q Consensus 177 ~~~~i~s~~~dg--~i~iwD~~t~~ 199 (264)
++.+.+.|+.+| ++..||..+.+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeeecceeehhhcCccccc
Confidence 456777777777 67777777655
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.39 E-value=8.4 Score=35.36 Aligned_cols=60 Identities=17% Similarity=0.271 Sum_probs=43.5
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcce--eEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 177 NPDLLSTASGDKTVRIWDARTQKSQ--IIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 177 ~~~~i~s~~~dg~i~iwD~~t~~~~--~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.+.+||.++..|-|++||--..... +......+.-|.-+.+|+++++-| ...+.+.|++.
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEeccc
Confidence 3468999999999999986544321 222334566788889999997777 56778889874
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=85.30 E-value=13 Score=35.26 Aligned_cols=44 Identities=9% Similarity=-0.025 Sum_probs=29.8
Q ss_pred CcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCeEEEE
Q psy9316 188 KTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFI 233 (264)
Q Consensus 188 g~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~ 233 (264)
+.+.+.++...+... ...+.+.++.|||||+.+|... ++.|++=
T Consensus 430 gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va 473 (591)
T PRK13616 430 GQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII-GGKVYLA 473 (591)
T ss_pred ceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEE
Confidence 445544665554322 3345688999999999998877 5777773
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=85.29 E-value=3.7 Score=40.95 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=52.7
Q ss_pred EeecCCCeeEEEeecCceEEecccccc---ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCC--CcccEE
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHND---IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD--LNKEVV 91 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~--~~~~~~ 91 (264)
++.|.-...-+.+..|+.|+....... +..+ .-...++|++|+|.|++++.|-..|++.-|.....-. +.....
T Consensus 162 ~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~ 240 (1405)
T KOG3630|consen 162 VWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPV 240 (1405)
T ss_pred cccCCccchhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCc
Confidence 556654322344556666655433221 1121 2344689999999999999999999999886442211 111111
Q ss_pred EecccccEEeEEEecCC
Q psy9316 92 YRGHTGSVDQLCWHATN 108 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~ 108 (264)
+ -...|.+++|....
T Consensus 241 ~--e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 241 E--ENYRVLSVTWLSTQ 255 (1405)
T ss_pred C--CCcceeEEEEecce
Confidence 1 15789999998533
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=85.22 E-value=2.2 Score=37.36 Aligned_cols=51 Identities=18% Similarity=0.321 Sum_probs=37.4
Q ss_pred CCcEEEEeCCCCcceeEee-cCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 187 DKTVRIWDARTQKSQIIAT-KGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 187 dg~i~iwD~~t~~~~~~~~-~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
.+.+.+||+++++...... ........|||+|+++|... ++-|++++...+
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~ 73 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG 73 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCC
Confidence 4578999999987543332 35567789999999999998 567899986543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=85.09 E-value=4.8 Score=35.94 Aligned_cols=61 Identities=13% Similarity=0.234 Sum_probs=39.2
Q ss_pred eeeEEEcCCCCCEEEEEeCCCc----EEEEeCCCCcceeEeecCce-EEEEEcCCCCEEEEeeCCC
Q psy9316 168 VDQLCWHATNPDLLSTASGDKT----VRIWDARTQKSQIIATKGEN-INITWAPNGNTIAVGNKED 228 (264)
Q Consensus 168 i~~i~~~~~~~~~i~s~~~dg~----i~iwD~~t~~~~~~~~~~~~-~~v~~sp~g~~la~gs~d~ 228 (264)
+..+.++|++..++++-+..|. ++++|+++++.......... ..+.|.++++.+.....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~ 191 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDE 191 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECST
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCc
Confidence 3456778876555556555555 99999999864332222222 2399999999876665443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.88 E-value=28 Score=30.94 Aligned_cols=110 Identities=20% Similarity=0.266 Sum_probs=68.3
Q ss_pred eEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCE
Q psy9316 101 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDL 180 (264)
Q Consensus 101 ~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~ 180 (264)
.+...+.+.+..+....+..|.+.|.++.+....+.. +. .-..+.++|.+..+
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-------------------------G~--~P~~~~~~~~~~~v 130 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-------------------------GL--GPVGLAVDPDGKYV 130 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-------------------------cc--CCceEEECCCCCEE
Confidence 4455555554555555567777777554332211111 11 22346777776666
Q ss_pred EEEEe--CCCcEEEEeCCCCcceeEeecC-ceEEEEEcCCCCEEEEe-eCCCeEEEEEccc
Q psy9316 181 LSTAS--GDKTVRIWDARTQKSQIIATKG-ENINITWAPNGNTIAVG-NKEDLVTFIDVVK 237 (264)
Q Consensus 181 i~s~~--~dg~i~iwD~~t~~~~~~~~~~-~~~~v~~sp~g~~la~g-s~d~~i~~~d~~~ 237 (264)
.++-. .++.+.+.|..+.........+ ....++++|+|+.+.+. +.++.+.++|...
T Consensus 131 YV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 131 YVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred EEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence 66655 4788889998887754333322 35789999999966444 5899999999654
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=84.52 E-value=3 Score=23.38 Aligned_cols=21 Identities=24% Similarity=0.626 Sum_probs=15.5
Q ss_pred CceEEEEEcCCCCEEEEeeCC
Q psy9316 207 GENINITWAPNGNTIAVGNKE 227 (264)
Q Consensus 207 ~~~~~v~~sp~g~~la~gs~d 227 (264)
+.....+|||||++|+..+..
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEEC
T ss_pred ccccCEEEecCCCEEEEEecC
Confidence 345678999999999877654
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.17 E-value=33 Score=32.20 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=32.8
Q ss_pred CCEEEEEeCC------CcEEEEeCCC-CcceeEe-ec--CceEEEEEcCCCCEEEEeeCCC--eEEEEEccc
Q psy9316 178 PDLLSTASGD------KTVRIWDART-QKSQIIA-TK--GENINITWAPNGNTIAVGNKED--LVTFIDVVK 237 (264)
Q Consensus 178 ~~~i~s~~~d------g~i~iwD~~t-~~~~~~~-~~--~~~~~v~~sp~g~~la~gs~d~--~i~~~d~~~ 237 (264)
+.+.+.|+.+ ..+..||.++ .+=.... .+ .....++- -+|+..++|+.|+ .+..||+.+
T Consensus 464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~-~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL-HDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE-ECCEEEEEeeecceeehhhcCccc
Confidence 4455566543 2467899987 4411111 11 11112221 2688889999888 677777654
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.65 E-value=28 Score=30.02 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=29.6
Q ss_pred CcEEEEeCCCCcceeEee-cCceEEEEEcCCCCEEEEe-eCCCeEEEEEcc
Q psy9316 188 KTVRIWDARTQKSQIIAT-KGENINITWAPNGNTIAVG-NKEDLVTFIDVV 236 (264)
Q Consensus 188 g~i~iwD~~t~~~~~~~~-~~~~~~v~~sp~g~~la~g-s~d~~i~~~d~~ 236 (264)
|.++-+|.......+... ....+.++||||++.|..+ +..+.+.-|+..
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 456666653332222222 2335679999999877555 555888888765
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=83.23 E-value=29 Score=29.82 Aligned_cols=72 Identities=14% Similarity=0.074 Sum_probs=46.6
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECC
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 127 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~ 127 (264)
.+.++.. .+++|+.|...+.+.++.++.....-...........++++.+.+++ +.++.+..+|.+.++...
T Consensus 131 ~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 131 YITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-
T ss_pred EEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEEC
Confidence 4555554 47799999988999988776532211111122345568888887555 478888999999988765
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=83.22 E-value=33 Score=30.53 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=44.2
Q ss_pred ecCCCCCceEeecCCCeeEEEeecCceEEecccc---ccccccccCC-CCEEEEEECCCCCeEEEEECCCcEEEEEeccC
Q psy9316 8 FHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTH---NDIKEYQAHG-SKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83 (264)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~h~-~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~ 83 (264)
.|+-+..+..+.+.|+.++..+..|+.-.+|... ..+..+.... .......++|+.+.|+-...+..++..|+.+.
T Consensus 33 ~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 33 SHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-
T ss_pred ccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC
Confidence 3445667777778888877766667765554321 1222232221 22234566788888877666667777777652
Q ss_pred CCCcccEEEecccccEEeEEEe
Q psy9316 84 GDLNKEVVYRGHTGSVDQLCWH 105 (264)
Q Consensus 84 ~~~~~~~~~~~h~~~v~~i~~~ 105 (264)
+...++......+-...|.
T Consensus 113 ---e~~~vy~~p~~~~g~gt~v 131 (386)
T PF14583_consen 113 ---EERVVYEVPDDWKGYGTWV 131 (386)
T ss_dssp ----EEEEEE--TTEEEEEEEE
T ss_pred ---cEEEEEECCccccccccee
Confidence 2334555555555445664
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=82.84 E-value=6.2 Score=33.04 Aligned_cols=60 Identities=10% Similarity=0.025 Sum_probs=46.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcceeE-eecCce-EEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 178 PDLLSTASGDKTVRIWDARTQKSQII-ATKGEN-INITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 178 ~~~i~s~~~dg~i~iwD~~t~~~~~~-~~~~~~-~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
+++++.|+..|.+++.+.++++.... ...+.+ .+....+++..+-+|+.|+..+..|.+.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc
Confidence 35788899999999999999965322 223322 3456788999999999999999999764
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=82.23 E-value=29 Score=32.75 Aligned_cols=167 Identities=19% Similarity=0.212 Sum_probs=81.2
Q ss_pred CCCeEEEEECCC------cEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCC-C-----cEEEEECCCC
Q psy9316 62 DGRRLASGSFDK------SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-K-----TVRIWDARTQ 129 (264)
Q Consensus 62 ~g~~l~s~s~dg------~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~d-g-----~i~vwd~~~~ 129 (264)
.+..++.||.++ .+..||...+..... .-+. ....-.+++.. ++.+.++|+.| | .+..||.+..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~-a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSL-APMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeec-CCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 355666777763 566776554311110 0011 11112233333 34677888888 3 3566777654
Q ss_pred C-------------------cceEEEeecCCCc-----EEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEe
Q psy9316 130 K-------------------SQIMLASGSFDKS-----VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS 185 (264)
Q Consensus 130 ~-------------------~~~~~~~~~~d~~-----i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~ 185 (264)
+ ...+.++|+.||. +..||...+. +... .....+.....-...++.+.+.|+
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~-W~~v---a~m~~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK-WTPV---APMLTRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred ceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc-cccc---CCCCcceeeeEEEEECCEEEEEcC
Confidence 2 1225677877764 4556544321 1110 001111111111122456777777
Q ss_pred CC------CcEEEEeCCCCcceeEee---cCceEEEEEcCCCCEEEEeeCCCe-----EEEEEccc
Q psy9316 186 GD------KTVRIWDARTQKSQIIAT---KGENINITWAPNGNTIAVGNKEDL-----VTFIDVVK 237 (264)
Q Consensus 186 ~d------g~i~iwD~~t~~~~~~~~---~~~~~~v~~sp~g~~la~gs~d~~-----i~~~d~~~ 237 (264)
.+ .++..||..+..=..... ......++ .-++..+++|+.|+. +..||...
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCC
Confidence 44 456788888776322211 11111222 236788888887763 67788654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.14 E-value=47 Score=30.27 Aligned_cols=100 Identities=21% Similarity=0.261 Sum_probs=42.8
Q ss_pred ceEeecCCCeeEEEeecCceEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEE-eccCCCCcccEEEe
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFA-LDKKGDLNKEVVYR 93 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~-~~~~~~~~~~~~~~ 93 (264)
..+..|++. +.++|. +|--.++.....-. ...+.-....|.+.++ +|+-....+|.++. ++. ..... ++
T Consensus 37 ~ls~npngr-~v~V~g-~geY~iyt~~~~r~---k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~-~~~k~---i~ 106 (443)
T PF04053_consen 37 SLSHNPNGR-FVLVCG-DGEYEIYTALAWRN---KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKN-EVVKS---IK 106 (443)
T ss_dssp EEEE-TTSS-EEEEEE-TTEEEEEETTTTEE---EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE--TT-------
T ss_pred eEEECCCCC-EEEEEc-CCEEEEEEccCCcc---cccCceeEEEEecCcc-EEEEECCCeEEEEEcCcc-ccceE---Ec
Confidence 336677775 444544 44334443211110 1123445678888555 45555578899963 221 11111 11
Q ss_pred cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
....+..+-. +.+|...+ ++.|.+||..+++
T Consensus 107 -~~~~~~~If~----G~LL~~~~-~~~i~~yDw~~~~ 137 (443)
T PF04053_consen 107 -LPFSVEKIFG----GNLLGVKS-SDFICFYDWETGK 137 (443)
T ss_dssp --SS-EEEEE-----SSSEEEEE-TTEEEEE-TTT--
T ss_pred -CCcccceEEc----CcEEEEEC-CCCEEEEEhhHcc
Confidence 1123444422 45665544 4489999998765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 264 | ||||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-11 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-11 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-11 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 3e-11 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 1e-10 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 8e-10 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 1e-09 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 2e-09 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 7e-09 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 9e-09 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-06 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 1e-08 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-08 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-08 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-08 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 5e-08 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 6e-08 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 6e-08 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 6e-08 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 7e-08 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 7e-08 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 7e-08 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 7e-08 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 7e-08 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 7e-08 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 7e-08 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 8e-08 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 8e-08 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 8e-08 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-07 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 1e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-07 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 4e-07 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 1e-06 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 1e-06 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 2e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 3e-06 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 4e-06 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 5e-06 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 5e-06 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 5e-06 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 5e-06 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 6e-06 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 6e-06 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 9e-06 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-05 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-05 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 4e-05 | ||
| 3mmy_A | 368 | Structural And Functional Analysis Of The Interacti | 6e-05 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 9e-05 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 3e-04 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 2e-04 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 3e-04 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 4e-04 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 4e-04 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 5e-04 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 5e-04 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 5e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 6e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 6e-04 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 7e-04 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 7e-04 |
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-30
Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 44/226 (19%)
Query: 13 SPEYKLLP---SGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWS-CDGRRLAS 68
+P++ L SG LV + + ++ H + V +AW + +AS
Sbjct: 43 NPKFMALICEASGGGAFLVLPLGKTGR---VDKNVPLVCGHTAPVLDIAWCPHNDNVIAS 99
Query: 69 GSFDKSVAIFALDKKGDLNK----EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124
GS D +V ++ + G + + GHT V + WH T ++L +A D + +W
Sbjct: 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159
Query: 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLS 182
D T + + L H ++ + W + D L+
Sbjct: 160 DVGTGAAVLTLG------------------------PDVHPDTIYSVDW---SRDGALIC 192
Query: 183 TASGDKTVRIWDARTQKSQIIATKG----ENINITWAPNGNTIAVG 224
T+ DK VR+ + R + ++ + G + G
Sbjct: 193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTG 238
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 4e-24
Identities = 42/204 (20%), Positives = 74/204 (36%), Gaps = 28/204 (13%)
Query: 54 VHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNPDL 111
A + L S + + L K G ++K V + GHT V + W N ++
Sbjct: 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNV 96
Query: 112 LSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 171
+++ S D TV +W+ + GHT V +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLV-------------------LPLREPVITLEGHTKRVGIV 137
Query: 172 CWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATKG--ENIN-ITWAPNGNTIAVGNKE 227
WH T ++L +A D + +WD T + + + + I + W+ +G I ++
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
Query: 228 DLVTFIDVVKSLPPRERTLTSRGH 251
V I+ K E+ R H
Sbjct: 198 KRVRVIEPRKGTVVAEKD---RPH 218
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 1e-21
Identities = 38/227 (16%), Positives = 75/227 (33%), Gaps = 47/227 (20%)
Query: 17 KLLPSGSQFHLVC--KIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRR-LASGSFDK 73
++ SGS+ V +I D + + H +V VAW + L S D
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154
Query: 74 SVAIFALD-KKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 130
+ ++ D G + H ++ + W + D L+ T+ DK VR+ + R
Sbjct: 155 VILVW--DVGTGAAVLTLGPDVHPDTIYSVDW---SRDGALICTSCRDKRVRVIEPRKGT 209
Query: 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLST---AS 185
R H G+ + +L+T
Sbjct: 210 VVAEK-------------------------DRPHEGTRPVHA--VFVSEGKILTTGFSRM 242
Query: 186 GDKTVRIWDARTQKSQIIATKGENIN----ITWAPNGNTIAVGNKED 228
++ V +WD + + + + + + + P+ N + + K D
Sbjct: 243 SERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD 289
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 4e-13
Identities = 18/157 (11%), Positives = 47/157 (29%), Gaps = 30/157 (19%)
Query: 51 GSKVHSVAWSCDGRRLASG---SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
G++ + +G+ L +G ++ VA++ K + + + V +
Sbjct: 220 GTRPVHAVFVSEGKILTTGFSRMSERQVALW-DTKHLEEPLSLQELDTSSGVLLPFFDPD 278
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+ GD ++R ++ ++ + S S
Sbjct: 279 TNIVYLCGKGDSSIRYFEITSEAPFLHYLSM-----------------------FSSKES 315
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA 204
+ + P + + R + +K + IA
Sbjct: 316 QRGMGYM---PKRGLEVNKCEIARFYKLHERKCEPIA 349
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-30
Identities = 43/218 (19%), Positives = 89/218 (40%), Gaps = 38/218 (17%)
Query: 18 LLPSGSQFHLVCKIDDYVKHFNTHND------IKEYQAHGSKVHSVAWSCDGR-RLASGS 70
++ + + V + DY KH + + H + + ++W+ + L S S
Sbjct: 143 VIATKTPSSDV-LVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201
Query: 71 FDKSVAIFALDKKGDLNKEV----VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 126
D ++ ++ ++ ++ + ++ GHT V+ + WH + L + + D+ + IWD
Sbjct: 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT 261
Query: 127 RTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG 186
R + + HT V+ L ++ + +L+T S
Sbjct: 262 RNNNTSKPSHT-----------------------VDAHTAEVNCLSFNPYSEFILATGSA 298
Query: 187 DKTVRIWDARTQKSQIIATKGENINIT---WAPNGNTI 221
DKTV +WD R K ++ + + I W+P+ TI
Sbjct: 299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI 336
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-26
Identities = 32/162 (19%), Positives = 67/162 (41%), Gaps = 17/162 (10%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRR-LASGSFDKSVAIFALDKKGDLNKEV-VYRGHT 96
NT AH ++V+ ++++ LA+GS DK+VA++ L L ++ + H
Sbjct: 265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHSFESHK 321
Query: 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLN 156
+ Q+ W N +L+++ D+ + +WD + +F
Sbjct: 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF--------- 372
Query: 157 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 198
++ GHT + W+ P ++ + S D +++W
Sbjct: 373 ---IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 3e-16
Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 17/146 (11%)
Query: 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN-KEVVYRGHTGSVDQLCWHATNPDL 111
+ SV + + +D F + + H G V++ + N +
Sbjct: 84 LIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACV 143
Query: 112 LSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 171
++T + V ++D S+ + G+ ++ RGH L
Sbjct: 144 IATKTPSSDVLVFDYTKHPSK----------------PEPSGECQPDLRLRGHQKEGYGL 187
Query: 172 CWHATNPDLLSTASGDKTVRIWDART 197
W+ L +AS D T+ +WD
Sbjct: 188 SWNPNLNGYLLSASDDHTICLWDINA 213
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 12/102 (11%), Positives = 31/102 (30%), Gaps = 1/102 (0%)
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLN-KEVVYRGHTGSVDQLC 172
T+ + I + +D F + + H G V++
Sbjct: 76 TSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRAR 135
Query: 173 WHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITW 214
+ N +++T + V ++D S+ + ++
Sbjct: 136 YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL 177
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-30
Identities = 47/251 (18%), Positives = 81/251 (32%), Gaps = 50/251 (19%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW-HATN 108
H +H G RLA+ S D+SV IF + G RGH G V Q+ W H
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVR-NGGQILIADLRGHEGPVWQVAWAHPMY 70
Query: 109 PDLLSTASGDKTVRIWDARTQKSQI-----------------------MLASGSFDKSVA 145
++L++ S D+ V IW + +LA GS D +++
Sbjct: 71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS 130
Query: 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWH----------------ATNPDLLSTASGDKT 189
+ +G + + HT + + W ++ D
Sbjct: 131 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL 190
Query: 190 VRIWDARTQKSQIIATKGENIN-----ITWAPN----GNTIAVGNKEDLVTFIDVVKSLP 240
+++W K E + + WAP+ +TIA +++ V +
Sbjct: 191 IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS 250
Query: 241 PRERTLTSRGH 251
Sbjct: 251 NTWSPKLLHKF 261
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 1e-27
Identities = 45/238 (18%), Positives = 80/238 (33%), Gaps = 64/238 (26%)
Query: 44 IKEYQAHGSKVHSVAWS--CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101
I + + H V VAW+ G LAS S+D+ V I+ + G K + GH SV+
Sbjct: 50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE-ENGTWEKSHEHAGHDSSVNS 108
Query: 102 LCWHATNPD----LLSTASGDKTVRIWDARTQKSQ------------------------- 132
+CW P +L+ S D + + +
Sbjct: 109 VCWA---PHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG 165
Query: 133 --------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 178
ASG D + ++ ++ G +E H+ V + W P
Sbjct: 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA---P 222
Query: 179 D------LLSTASGDKTVRIWDART-----QKSQIIATKGENIN-ITWAPNGNTIAVG 224
+++ S D V IW +++ + + ++W+ N +AV
Sbjct: 223 SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS 280
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 1e-20
Identities = 29/181 (16%), Positives = 52/181 (28%), Gaps = 53/181 (29%)
Query: 44 IKEYQAHGSKVHSVAWSCDG-----------------RRLASGSFDKSVAIFALDKKGDL 86
K AH ++V+W+ +R ASG D + ++ ++ G
Sbjct: 143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW 202
Query: 87 NKEVVYRGHTGSVDQLCWHATNPD------LLSTASGDKTVRIWDARTQKSQIMLASGSF 140
+E H+ V + W P +++ S D V IW S
Sbjct: 203 KEEQKLEAHSDWVRDVAWA---PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPK--- 256
Query: 141 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 198
+ V + W + +L+ + GD V +W
Sbjct: 257 -------------------LLHKFNDVVWHVSW---SITANILAVSGGDNKVTLWKESVD 294
Query: 199 K 199
Sbjct: 295 G 295
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 7e-07
Identities = 18/90 (20%), Positives = 24/90 (26%), Gaps = 13/90 (14%)
Query: 16 YKLLPSGSQFHLVCKIDDYVKHFNTHND------IKEYQAHGSKVHSVAWSCDGRRLASG 69
+ S SQ D V + + K V V+WS LA
Sbjct: 228 TSTIASCSQ-------DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS 280
Query: 70 SFDKSVAIFALDKKGDLNKEVVYRGHTGSV 99
D V ++ G GSV
Sbjct: 281 GGDNKVTLWKESVDGQWVCISDVNKGQGSV 310
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-30
Identities = 29/225 (12%), Positives = 73/225 (32%), Gaps = 37/225 (16%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHG--SKVHSVAWSCDGRRLAS 68
+ + + S D ++ + K + SK + + WS + + +A
Sbjct: 32 TVSGTVDANFST-------DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAG 84
Query: 69 GSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 127
+ S+ +++ ++ + + + H+ SV + ++A ++L++ + + IWD
Sbjct: 85 ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144
Query: 128 TQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD 187
+ V L W+ + + ++A
Sbjct: 145 KCTESPSNYTPLTPGQS-----------------MSSVDEVISLAWNQSLAHVFASAGSS 187
Query: 188 KTVRIWDARTQKSQIIATKGENIN--------ITWAPNGNTIAVG 224
IWD + +K I + + + W P +T
Sbjct: 188 NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 6e-26
Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 31/198 (15%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWS-CDGRRLASGSF 71
S K++ + ++ + N N + + H S V +V ++ LASG
Sbjct: 76 SHNNKIIAGALDNGSL-ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN 134
Query: 72 DKSVAI------FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125
+ + I V L W+ + + ++A IWD
Sbjct: 135 NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWD 194
Query: 126 ARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS 185
+ +K I L+ S G + + WH N ++TA+
Sbjct: 195 LKAKKEVIHLSYTS--------------------PNSGIKQQLSVVEWHPKNSTRVATAT 234
Query: 186 G---DKTVRIWDARTQKS 200
G D ++ IWD R +
Sbjct: 235 GSDNDPSILIWDLRNANT 252
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-22
Identities = 24/155 (15%), Positives = 56/155 (36%), Gaps = 28/155 (18%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108
+H V+ + G A+ S D S+ +++L D K + + L W +
Sbjct: 21 SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLL-AADSEKPIASLQVDSKFNDLDW---S 76
Query: 109 PD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
+ +++ A + ++ ++ + S+A F H+
Sbjct: 77 HNNKIIAGALDNGSLELYSTNEANNA--------INSMARF--------------SNHSS 114
Query: 167 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 201
SV + ++A ++L++ + + IWD
Sbjct: 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES 149
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-17
Identities = 20/160 (12%), Positives = 47/160 (29%), Gaps = 12/160 (7%)
Query: 48 QAHGSKVHSVAWS-CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 106
Q H + S+ W D L S D +V ++ + + + + + +
Sbjct: 259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP-ESAEQLSQ--FPARGNWCFKTKFAP 315
Query: 107 TNPDLLSTASGDKTVRIWDART---QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
PDL + AS D + + + + + + + + + ++
Sbjct: 316 EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFH 375
Query: 164 HTGS--VDQLCWHAT---NPDLLSTASGDKTVRIWDARTQ 198
+ A L+ K V I + +
Sbjct: 376 LQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 4e-09
Identities = 14/102 (13%), Positives = 37/102 (36%), Gaps = 23/102 (22%)
Query: 115 ASGDKTVRIWD-ARTQK----------------SQIMLASGSFDKSVAIFALDKKGDLNK 157
+ V++ + +RT S + A+ S D S+ +++L D K
Sbjct: 1 GAMGSMVKLAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLL-AADSEK 59
Query: 158 EVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
+ + L W + + +++ A + ++ ++
Sbjct: 60 PIASLQVDSKFNDLDW---SHNNKIIAGALDNGSLELYSTNE 98
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-29
Identities = 39/213 (18%), Positives = 81/213 (38%), Gaps = 32/213 (15%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRR-LASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 97
+++ +++ + S+AW +A GS + ++ D + G G
Sbjct: 107 DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFG-IKDKPTFIKGIGAGG 165
Query: 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI---------------------MLA 136
S+ L ++ N + +S + T R+ D + ++ M+
Sbjct: 166 SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVV 225
Query: 137 SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 196
+G +V + L+ G + R H V + + L+TAS D+TV+IWD R
Sbjct: 226 TGDNVGNVIL--LNMDG--KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
Query: 197 T--QKSQIIATKG--ENIN-ITWAPNGNTIAVG 224
K+ + + +N ++P+G +
Sbjct: 282 QVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-26
Identities = 37/185 (20%), Positives = 57/185 (30%), Gaps = 40/185 (21%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
S+ S R + +G +V + L+ G + R H V + +
Sbjct: 208 INIWFCSLDVSASSRMVVTGDNVGNVIL--LNMDG--KELWNLRMHKKKVTHVALNPCCD 263
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
L+TAS D+TV+IWD R + + + H V+
Sbjct: 264 WFLATASVDQTVKIWDLRQVRGKASF-----------------------LYSLPHRHPVN 300
Query: 170 QLCWHATNPD--LLSTASGDKTVRIWDARTQK--------SQIIATKGENINITWAPNGN 219
C+ PD L T +R++ A I W P N
Sbjct: 301 AACFS---PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYN 357
Query: 220 TIAVG 224
I VG
Sbjct: 358 LIVVG 362
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 2e-21
Identities = 35/217 (16%), Positives = 73/217 (33%), Gaps = 25/217 (11%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRR-LASGSF 71
S +++ +G V + + ++ + H KV VA + LA+ S
Sbjct: 218 SASSRMVVTGDNVGNV-ILLN-----MDGKELWNLRMHKKKVTHVALNPCCDWFLATASV 271
Query: 72 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 129
D++V I+ L + + H V+ C+ PD L T +R++ A
Sbjct: 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS---PDGARLLTTDQKSEIRVYSASQW 328
Query: 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 189
+ L + + ++ + + T +T
Sbjct: 329 DCPLGLIPHPHRHFQHLTPIK---------AAWHPRYNLIVVGRYPDPNFKSCTPYELRT 379
Query: 190 VRIWDARTQKSQIIATKGENINIT----WAPNGNTIA 222
+ ++D + K E+ I+ + P G+T+A
Sbjct: 380 IDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLA 416
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 5e-21
Identities = 24/179 (13%), Positives = 55/179 (30%), Gaps = 37/179 (20%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H K+ A ++ SF ++ + + +K L WH T+P
Sbjct: 82 HQHKL-GRASWPSVQQGLQQSFLHTLDSYRILQK--------AAPFDRRATSLAWHPTHP 132
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
++ S + +W+ + + G GS+
Sbjct: 133 STVAVGSKGGDIMLWNFGIKDKPTFI------------------------KGIGAGGSIT 168
Query: 170 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN----ITWAPNGNTIAVG 224
L ++ N + +S + T R+ D + ++ A+ + + + + G
Sbjct: 169 GLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTG 227
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 4e-15
Identities = 24/167 (14%), Positives = 48/167 (28%), Gaps = 42/167 (25%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALD---KKGDLNKEVVYRGHTGSVDQLCWHA 106
H V++ +S DG RL + + +++ L + + WH
Sbjct: 295 HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP 354
Query: 107 TN--------PD---LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDL 155
PD T +T+ ++D + K
Sbjct: 355 RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM------------------------ 390
Query: 156 NKEVVYRGHTGSVDQLCWHATNPDLLSTASG-DKTVRIWDARTQKSQ 201
+Y + + L NP + AS + IW + +++
Sbjct: 391 -MCQLYDPESSGISSLN--EFNPMGDTLASAMGYHILIWSQQEARTR 434
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 12/95 (12%)
Query: 111 LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 170
++ T K R Q+ SF ++ + + +K
Sbjct: 77 IVRTLHQHKLGRASWPSVQQ----GLQQSFLHTLDSYRILQK--------AAPFDRRATS 124
Query: 171 LCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT 205
L WH T+P ++ S + +W+ +
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK 159
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 7e-29
Identities = 34/238 (14%), Positives = 73/238 (30%), Gaps = 51/238 (21%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ + H V V W+ R+ + S D++ ++ G + +V + +
Sbjct: 48 ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVR 107
Query: 104 WHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
W P+ + SG + + + + + +
Sbjct: 108 WS---PNEDKFAVGSGARVISVCYFEQENDWWVSKH----------------------LK 142
Query: 162 RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK----------------SQII 203
R ++ L WH P+ LL+ D+ + A + + +
Sbjct: 143 RPLRSTILSLDWH---PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC 199
Query: 204 ATKGENINIT---WAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258
A + ++P+GN +A + VT P +T + + RSL
Sbjct: 200 AEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSL 257
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 2e-27
Identities = 23/188 (12%), Positives = 51/188 (27%), Gaps = 40/188 (21%)
Query: 47 YQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 106
+ A++ + + V ++ D + H V + W
Sbjct: 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQD-GNGWKHARTFSDHDKIVTCVDWA- 64
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
P + T S D+ +++ R G + +V
Sbjct: 65 --PKSNRIVTCSQDRNAYVYEKRPD-----------------------GTWKQTLVLLRL 99
Query: 165 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT---KGENINIT---WAP 216
+ + W P+ + SG + + + + ++ + I W P
Sbjct: 100 NRAATFVRWS---PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156
Query: 217 NGNTIAVG 224
N +A G
Sbjct: 157 NNVLLAAG 164
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-25
Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 26/188 (13%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK-EVVYRGHTGSVDQLCWHA 106
V WS + + A GS + +++ +++ D + + R ++ L WH
Sbjct: 97 LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWH- 155
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
P+ LL+ D+ + A + + + + N
Sbjct: 156 --PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGS---------RLPFNTVCAEYPS 204
Query: 165 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENIN------ITWAP 216
G V + + +P L+ A D +V I + A ++ + WA
Sbjct: 205 GGWVHAVGF---SPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN 261
Query: 217 NGNTIAVG 224
+A G
Sbjct: 262 ESAIVAAG 269
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 5e-12
Identities = 24/185 (12%), Positives = 48/185 (25%), Gaps = 25/185 (13%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
SP L V I + + + S+ W+ + +A+G +
Sbjct: 214 SPSGNALAYAGHDSSV-TIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY-N 271
Query: 73 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 132
S + ++ G R + + + V R +
Sbjct: 272 YSPILLQGNESG----WAHTRDLDAGTSKT-SFTHTGNTGEGREEEGPVSFTALR-STFR 325
Query: 133 IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD---LLSTASGDKT 189
M GS ++ H + L +A P +++ D
Sbjct: 326 NMDLKGSSQSISSLPT--------------VHQNMIATLRPYAGTPGNITAFTSSGTDGR 371
Query: 190 VRIWD 194
V +W
Sbjct: 372 VVLWT 376
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-28
Identities = 50/269 (18%), Positives = 85/269 (31%), Gaps = 71/269 (26%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHND----IKEYQAHGSKVHSVAWSC--DGRRL 66
K + + S D +K F + I H V V W+ G L
Sbjct: 18 DYYGKRMATCSS-------DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTIL 70
Query: 67 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD----LLSTASGDKTVR 122
AS S+D V I+ + G ++ V+ H+ SV+ + W P +L AS D V
Sbjct: 71 ASCSYDGKVMIWKE-ENGRWSQIAVHAVHSASVNSVQWA---PHEYGPMLLVASSDGKVS 126
Query: 123 IWDARTQKSQI----------------------------------MLASGSFDKSVAIFA 148
+ + + + +G D V I+
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
Query: 149 LDKKGDLNKEV-VYRGHTGSVDQLCWHATNPDLLS-----TASGDKTVRIWDARTQKSQI 202
+ GH+ V + W P +L + S D+T IW ++
Sbjct: 187 YNSDAQTYVLESTLEGHSDWVRDVAWS---PTVLLRSYMASVSQDRTCIIWTQDNEQGPW 243
Query: 203 IATKGENIN-------ITWAPNGNTIAVG 224
T + +W+ +GN +A+
Sbjct: 244 KKTLLKEEKFPDVLWRASWSLSGNVLALS 272
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-27
Identities = 47/228 (20%), Positives = 77/228 (33%), Gaps = 54/228 (23%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHA 106
AH +H G+R+A+ S DK++ IF + +G+ +K + GH G V ++ W A
Sbjct: 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIF--EVEGETHKLIDTLTGHEGPVWRVDW-A 62
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
+L++ S D V IW G ++ V+ H
Sbjct: 63 HPKFGTILASCSYDGKVMIWKEEN------------------------GRWSQIAVHAVH 98
Query: 165 TGSVDQLCWHATNPD----LLSTASGDKTVRIWDARTQKSQIIAT-KGENINIT---WAP 216
+ SV+ + W P +L AS D V + + + + I + WAP
Sbjct: 99 SASVNSVQWA---PHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155
Query: 217 -------------NGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGH 251
G ++LV T GH
Sbjct: 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-25
Identities = 34/209 (16%), Positives = 63/209 (30%), Gaps = 48/209 (22%)
Query: 44 IKEYQAHGSKVHSVAWSCD--GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101
I + H + V+SV W+ G L S D V++ + G + ++ H V+
Sbjct: 92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNS 150
Query: 102 LCWH------------ATNPDLLSTASGDKTVRIWDARTQKSQI---------------- 133
W T D V+IW +
Sbjct: 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210
Query: 134 ----------MLASGSFDKSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD-- 179
+AS S D++ I+ D + K+ + + + W +
Sbjct: 211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW---SLSGN 267
Query: 180 LLSTASGDKTVRIWDARTQKSQIIATKGE 208
+L+ + GD V +W + A +
Sbjct: 268 VLALSGGDNKVTLWKENLEGKWEPAGEVH 296
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 3e-17
Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 11/129 (8%)
Query: 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD---GRRLASGSFDK 73
+ +G +LV KI Y T+ + H V VAWS +AS S D+
Sbjct: 171 RKFVTGGADNLV-KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229
Query: 74 SVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 129
+ I+ D + K+ + + + W + +L+ + GD V +W +
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW---SLSGNVLALSGGDNKVTLWKENLE 286
Query: 130 KSQIMLASG 138
Sbjct: 287 GKWEPAGEV 295
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 1e-28
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 36/174 (20%)
Query: 40 THNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV----VYRGH 95
T D+ + AH + SVAW LA+GSFD +V+I+A ++ D E+ + GH
Sbjct: 47 TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH 106
Query: 96 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKG 153
V + W + D L+T S DK+V IW+ + S
Sbjct: 107 ENEVKGVAW---SNDGYYLATCSRDKSVWIWETDESGEEYECIS---------------- 147
Query: 154 DLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT 205
V + H+ V + WH P LL+++S D TVRIW + +A
Sbjct: 148 ------VLQEHSQDVKHVIWH---PSEALLASSSYDDTVRIWKDYDDDWECVAV 192
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 2e-24
Identities = 36/188 (19%), Positives = 64/188 (34%), Gaps = 36/188 (19%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
Q H V V W LAS S+D +V I+ D V GH G+V +
Sbjct: 150 QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD-DDWECVAVLNGHEGTVWSSDF--- 205
Query: 108 NPD----LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
+ L + S D TVR+W D++ + + ++
Sbjct: 206 DKTEGVFRLCSGSDDSTVRVWKYMGDDE-----------------DDQQEWVCEAILPDV 248
Query: 164 HTGSVDQLCWHATNPD-LLSTASGDKTVRIWDARTQKSQIIATKGENINITW-------A 215
H V + W + L+++ D + +++ + ++ A + +
Sbjct: 249 HKRQVYNVAWG---FNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE 305
Query: 216 PNGNTIAV 223
NG TI
Sbjct: 306 LNGKTILA 313
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 2e-24
Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 38/194 (19%)
Query: 40 THNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGS 98
+ N IK + + K+ S +S LA+GS D+ + + ++ +V H +
Sbjct: 3 SINLIKSLKLYKEKIWSFDFS--QGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKA 60
Query: 99 VDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLN 156
+ + W P LL+ S D TV IW + +AI
Sbjct: 61 IRSVAWR---PHTSLLAAGSFDSTVSIWAKEESADR-----TFEMDLLAII--------- 103
Query: 157 KEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART--QKSQIIAT-KG--EN 209
GH V + W + D L+T S DK+V IW+ ++ + I+ + ++
Sbjct: 104 -----EGHENEVKGVAW---SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155
Query: 210 IN-ITWAPNGNTIA 222
+ + W P+ +A
Sbjct: 156 VKHVIWHPSEALLA 169
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 4e-22
Identities = 21/160 (13%), Positives = 49/160 (30%), Gaps = 39/160 (24%)
Query: 50 HGSKVHSVAWSCDGR--RLASGSFDKSVAIFALDKKGDLNKE------VVYRGHTGSVDQ 101
H V S + RL SGS D +V ++ + +++ ++ H V
Sbjct: 196 HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYN 255
Query: 102 LCWHATNPD-LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVV 160
+ W + L+++ D + +++ + ++
Sbjct: 256 VAWG---FNGLIASVGADGVLAVYEEVDGEWKVFAKRA---------------------- 290
Query: 161 YRGHTGSVDQLCWHATNPD---LLSTASGDKTVRIWDART 197
++ + W + +L+T D V W
Sbjct: 291 LCHGVYEINVVKWL--ELNGKTILATGGDDGIVNFWSLEK 328
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 4e-14
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHA 106
H +V++VAW +G +AS D +A++ +D + + + ++ + W
Sbjct: 247 DVHKRQVYNVAWGFNGL-IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWL- 304
Query: 107 TNPD---LLSTASGDKTVRIWDART 128
+ +L+T D V W
Sbjct: 305 -ELNGKTILATGGDDGIVNFWSLEK 328
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 5e-28
Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 39/182 (21%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
S+ +AW+ G LAS D+ + I+ + + K V+ GH +V ++ W +P
Sbjct: 15 PDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW---SP 71
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
L++AS D T IW + + GH
Sbjct: 72 CGNYLASASFDATTCIWKKNQDDFECV------------------------TTLEGHENE 107
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDART-QKSQIIAT-KG--ENIN-ITWAPNGNT 220
V + W P LL+T S DK+V +W+ + + ++ +++ + W P+
Sbjct: 108 VKSVAW---APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164
Query: 221 IA 222
+A
Sbjct: 165 LA 166
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 8e-25
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 21/158 (13%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
+H V V W LAS S+D +V ++ + + D GH +V L +
Sbjct: 147 NSHTQDVKHVVWHPSQELLASASYDDTVKLYREE-EDDWVCCATLEGHESTVWSLAF--- 202
Query: 108 NPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165
+P L++ S D+TVRIW ++ +A D S + H+
Sbjct: 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC----------TLSGFHS 252
Query: 166 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQ 201
++ + W L+TA GD +R++
Sbjct: 253 RTIYDIAWC---QLTGALATACGDDAIRVFQEDPNSDP 287
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 2e-24
Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 35/163 (21%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY-------------RGHT 96
H S V S+A+ G+RLAS S D++V I+ G+ H+
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS 252
Query: 97 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGD 154
++ + W L+TA GD +R++
Sbjct: 253 RTIYDIAWC---QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH------------ 297
Query: 155 LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
+++ H+ V+ + W+ P LL++ S D V W +
Sbjct: 298 -----LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-06
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 162 RGHTGS-VDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGE----NIN-IT 213
H S L W+ P LL++ GD+ +RIW + E + +
Sbjct: 12 PAHPDSRCWFLAWN---PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVA 68
Query: 214 WAPNGNTIAVG 224
W+P GN +A
Sbjct: 69 WSPCGNYLASA 79
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 7e-28
Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 52/215 (24%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H V+ +S DG+R+AS DK++ +F + L + H V +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFS---S 667
Query: 110 D--LLSTASGDKTVRIWDARTQK---------------------SQIMLASGSFDKSVAI 146
D ++T S DK V+IWD+ T K + ++LA+GS D + +
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 147 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIA 204
+ L++K N GHT SV+ + PD LL++ S D T+R+WD R+ +
Sbjct: 728 WDLNQKECRN---TMFGHTNSVNHCRFS---PDDELLASCSADGTLRLWDVRSANERKSI 781
Query: 205 TKGENIN---------------ITWAPNGNTIAVG 224
+W+ +G+ I V
Sbjct: 782 NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 816
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 4e-26
Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 39/192 (20%)
Query: 37 HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96
+ + V +WS DG ++ + +K V +F + G L + ++ GH
Sbjct: 784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAE--IHTGHH 840
Query: 97 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGD 154
++ + P L A V +W+ ++
Sbjct: 841 STIQYCDFS---PYDHLAVIALSQYCVELWNIDSRLKVADC------------------- 878
Query: 155 LNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENINI 212
RGH V + + PD TAS D+T+R+W+ + + I++
Sbjct: 879 -------RGHLSWVHGVMFS---PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 928
Query: 213 TWAPNGNTIAVG 224
+ N +
Sbjct: 929 VFQENETMVLAV 940
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 7e-25
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 30/185 (16%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+++ H V S A S D + +S S DK+ I++ D E+ +GH G V
Sbjct: 1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD-LLSPLHEL--KGHNGCVRCSA 1134
Query: 104 WHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
+ D LL+T + +RIW+ + A S ++
Sbjct: 1135 FS---LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG-----------------T 1174
Query: 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIATKGENIN-ITWAPNGN 219
H G V +C+ PD + S ++ W+ T S Q T G N+ I +P+
Sbjct: 1175 ATHGGWVTDVCFS---PDSKTLVSAGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFR 1231
Query: 220 TIAVG 224
T
Sbjct: 1232 TYVTV 1236
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 96.1 bits (239), Expect = 1e-22
Identities = 46/228 (20%), Positives = 73/228 (32%), Gaps = 59/228 (25%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHN-DIKEYQAHGSKVHSVAWSCDGRRLASGSF 71
+ + K L S S+ D ++ +N D QAH V D RL S SF
Sbjct: 1012 TADGKTLISSSE-------DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSF 1063
Query: 72 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 129
D +V ++ + G + E + H G+V D S+ S DKT +IW
Sbjct: 1064 DGTVKVWNV-ITGRI--ERDFTCHQGTVLSCAIS---SDATKFSSTSADKTAKIWSFDLL 1117
Query: 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGD 187
L +GH G V + D LL+T +
Sbjct: 1118 SPLHEL--------------------------KGHNGCVRCSAFS---LDGILLATGDDN 1148
Query: 188 KTVRIWDARTQKSQIIATKGENIN-----------ITWAPNGNTIAVG 224
+RIW+ + + ++P+ T+
Sbjct: 1149 GEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 6e-22
Identities = 33/192 (17%), Positives = 57/192 (29%), Gaps = 49/192 (25%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
S + S S D K F+ + + E + H V A+S DG LA+G
Sbjct: 1094 SSDATKFSSTSA-------DKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGD 1146
Query: 71 FDKSVAIF------ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124
+ + I+ L ++ E H G V +C+ PD + S ++ W
Sbjct: 1147 DNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS---PDSKTLVSAGGYLKWW 1203
Query: 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLS 182
+ T S + ++ ++ PD
Sbjct: 1204 NVATGDSSQTF--------------------------YTNGTNLKKIHVS---PDFRTYV 1234
Query: 183 TASGDKTVRIWD 194
T + I
Sbjct: 1235 TVDNLGILYILQ 1246
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 8e-22
Identities = 26/221 (11%), Positives = 62/221 (28%), Gaps = 57/221 (25%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFN--THNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
SP L V+ +N + + + + H S VH V +S DG + S
Sbjct: 849 SPYDHLAVIALS-------QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 901
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 128
D+++ ++ K + + + ++ + +++ +T
Sbjct: 902 DDQTIRVWETKK-----VCKNSAIVLKQEIDVVFQ---ENETMVLAVDNIRGLQLIAGKT 953
Query: 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASG 186
+ + V C P ++
Sbjct: 954 GQ-----------------------------IDYLPEAQVSCCCLS---PHLEYVAFGDE 981
Query: 187 DKTVRIWDARTQKSQIIATKGEN--IN-ITWAPNGNTIAVG 224
D ++I + + + G + I + +G T+
Sbjct: 982 DGAIKIIELPNNR-VFSSGVGHKKAVRHIQFTADGKTLISS 1021
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 91.8 bits (228), Expect = 3e-21
Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 35/220 (15%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRR--LASGS 70
S + + + S V KI D T + Y H +V+ ++ LA+GS
Sbjct: 666 SSDDSYIATCSADKKV-KIWDS----ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 720
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 128
D + ++ L++K N GHT SV+ + PD LL++ S D T+R+WD R+
Sbjct: 721 NDFFLKLWDLNQKECRN---TMFGHTNSVNHCRFS---PDDELLASCSADGTLRLWDVRS 774
Query: 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASG 186
+ + K+ L+ E V W D + A+
Sbjct: 775 ANERKSINV-------------KRFFLSSEDPPEDVEVIVKCCSWS---ADGDKIIVAAK 818
Query: 187 DKTVRIWDARTQK-SQIIATKGENIN-ITWAPNGNTIAVG 224
+K + + ++I I ++P + +
Sbjct: 819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 858
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 3e-20
Identities = 32/226 (14%), Positives = 67/226 (29%), Gaps = 55/226 (24%)
Query: 20 PSGSQFHLV-CKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVA 76
+ L D ++K N H + V+ +S D LAS S D ++
Sbjct: 709 NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768
Query: 77 IFALD----------KKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIW 124
++ + K+ L+ E V W D + A+ +K +
Sbjct: 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS---ADGDKIIVAAKNKVLLFD 825
Query: 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLS 182
+ + GH ++ + P L
Sbjct: 826 IHTSGLLAEIH--------------------------TGHHSTIQYCDFS---PYDHLAV 856
Query: 183 TASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIAVG 224
A V +W+ + +A +G ++ + ++P+G++
Sbjct: 857 IALSQYCVELWNIDS--RLKVADCRGHLSWVHGVMFSPDGSSFLTA 900
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 1e-13
Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 45/154 (29%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
+K+ + GR K++ + +V R HT +V C+ +
Sbjct: 578 RQAKLQAKQEGDTGRLYLEWINKKTIKNLSR---------LVVRPHTDAVYHACF---SQ 625
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
D +++ DKT++++ A T + + + + H
Sbjct: 626 DGQRIASCGADKTLQVFKAETGEKLLDI--------------------------KAHEDE 659
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 199
V + D ++T S DK V+IWD+ T K
Sbjct: 660 VLCCAFS---SDDSYIATCSADKKVKIWDSATGK 690
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 1e-27
Identities = 38/200 (19%), Positives = 64/200 (32%), Gaps = 40/200 (20%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
+++A S D + S D ++A++ L L + ++GHT +
Sbjct: 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDL-HNQTLVR--QFQGHTDGASCIDIS---N 193
Query: 110 D--LLSTASGDKTVRIWDARTQK--------SQI----------MLASGSFDKSVAIFAL 149
D L T D TVR WD R + SQI LA G +V + +
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253
Query: 150 DKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKG 207
+K + H V L + + D + W I
Sbjct: 254 NKP----DKYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYG--ASIFQSK 304
Query: 208 EN---INITWAPNGNTIAVG 224
E+ ++ + + I G
Sbjct: 305 ESSSVLSCDISVDDKYIVTG 324
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 1e-23
Identities = 34/182 (18%), Positives = 52/182 (28%), Gaps = 42/182 (23%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
+ + S DG L G +++I+ L K + L P
Sbjct: 96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA-ELTSSAPACYALAIS---P 151
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
D + + D + +WD Q +GHT
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQF--------------------------QGHTDG 185
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKG--ENIN-ITWAPNGNTIA 222
+ D L T D TVR WD R + + I + + P G +A
Sbjct: 186 ASCIDIS---NDGTKLWTGGLDNTVRSWDLRE--GRQLQQHDFTSQIFSLGYCPTGEWLA 240
Query: 223 VG 224
VG
Sbjct: 241 VG 242
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 87.2 bits (217), Expect = 3e-20
Identities = 27/185 (14%), Positives = 51/185 (27%), Gaps = 43/185 (23%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALD--KKGDLNKEVVYRGHTGSVDQLCWHAT 107
HG V +V S R + +G V ++ + ++ +
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL--- 105
Query: 108 NPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165
PD L T+ IWD +I
Sbjct: 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIK------------------------AELTSSA 141
Query: 166 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGN 219
+ L PD + + D + +WD Q ++ +G + + I + +G
Sbjct: 142 PACYALAIS---PDSKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTDGASCIDISNDGT 196
Query: 220 TIAVG 224
+ G
Sbjct: 197 KLWTG 201
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-18
Identities = 20/182 (10%), Positives = 41/182 (22%), Gaps = 41/182 (22%)
Query: 50 HGSKVHSVAWSCDGRRLA-SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108
+S + DG+ D + +++ H V + +
Sbjct: 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA----RQINTLNHGEVVCAVTI---S 60
Query: 109 PD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
+ T V++WD ++ ++
Sbjct: 61 NPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDC---------------------LNRDN 98
Query: 167 SVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KGENINIT---WAPNGNT 220
+ PD L T+ IWD +I A +P+
Sbjct: 99 YIRSCKL---LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155
Query: 221 IA 222
Sbjct: 156 CF 157
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 2e-27
Identities = 48/239 (20%), Positives = 78/239 (32%), Gaps = 60/239 (25%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCD--GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96
TH I H V V W+ G LAS S+D V I+ + G ++ V+ H+
Sbjct: 43 ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE-ENGRWSQIAVHAVHS 101
Query: 97 GSVDQLCWHATNPD----LLSTASGDKTVRIWDARTQKSQI------------------- 133
SV+ + W P LL AS D V + + + +
Sbjct: 102 ASVNSVQWA---PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158
Query: 134 ---------------MLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATN 177
+G D V I+ + GH+ V + W
Sbjct: 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS--- 215
Query: 178 PDLLS-----TASGDKTVRIWDARTQKSQIIATKGENIN-------ITWAPNGNTIAVG 224
P +L + S D+T IW ++ T + +W+ +GN +A+
Sbjct: 216 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 274
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 9e-26
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 39/179 (21%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCW-H 105
AH +H G+RLA+ S DK++ IF + +G+ +K + GH G V ++ W H
Sbjct: 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIF--EVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 106 ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165
+L++ S D V IW G ++ V+ H+
Sbjct: 66 PKFGTILASCSYDGKVLIWKEEN------------------------GRWSQIAVHAVHS 101
Query: 166 GSVDQLCWHATNPD----LLSTASGDKTVRIWDARTQKSQIIAT-KGENINIT---WAP 216
SV+ + W P LL AS D V + + + + I + WAP
Sbjct: 102 ASVNSVQWA---PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 157
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 4e-25
Identities = 37/226 (16%), Positives = 66/226 (29%), Gaps = 48/226 (21%)
Query: 44 IKEYQAHGSKVHSVAWSCD--GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101
I + H + V+SV W+ G L S D V++ + G + ++ H V+
Sbjct: 94 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNS 152
Query: 102 LCWH------------ATNPDLLSTASGDKTVRIWDARTQKSQI---------------- 133
W T D V+IW +
Sbjct: 153 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 212
Query: 134 ----------MLASGSFDKSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD-- 179
LAS S D++ I+ D + K+ + + + W +
Sbjct: 213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW---SLSGN 269
Query: 180 LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGN 225
+L+ + GD V +W + A + G T +
Sbjct: 270 VLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFD 315
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-19
Identities = 34/192 (17%), Positives = 56/192 (29%), Gaps = 49/192 (25%)
Query: 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD---GRRLASGSFDK 73
+ +G +LV KI Y T+ + H V VAWS LAS S D+
Sbjct: 173 RKFVTGGADNLV-KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231
Query: 74 SVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 129
+ I+ D + K+ + + + W + +L+ + GD V +W +
Sbjct: 232 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW---SLSGNVLALSGGDNKVTLWKENLE 288
Query: 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 189
E H G + G T
Sbjct: 289 GKW-------------------------EPAGEVHQGGG-------------GSGGGGAT 310
Query: 190 VRIWDARTQKSQ 201
+ +D Q
Sbjct: 311 SKEFDGPCQNEI 322
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 5e-12
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 16/110 (14%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ + + + +WS G LA D V ++ + +G E H G
Sbjct: 249 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW--EPAGEVHQGGG---- 302
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFD-KSVAIFALDKK 152
+ G T + +D Q +L S D A + ++
Sbjct: 303 ---------GSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKER 343
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 4e-27
Identities = 45/219 (20%), Positives = 84/219 (38%), Gaps = 47/219 (21%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDY-VKHFN--THNDIKEYQAHGSKVHSVAWSCDGRRLASG 69
+ GS DD+ ++ FN T + +++AH + S+A + SG
Sbjct: 64 IARKNWIIVGS--------DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 70 SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 129
S D +V ++ + L + + GH V + ++ +P ++ D+TV++W
Sbjct: 116 SDDLTVKLWNWENNWALEQ--TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
Query: 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGD 187
L G V+ + ++ PD + TAS D
Sbjct: 174 TPNFTL-------------------------TTGQERGVNYVDYY-PLPDKPYMITASDD 207
Query: 188 KTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIA 222
T++IWD +T +AT +G N++ + P I
Sbjct: 208 LTIKIWDYQT--KSCVATLEGHMSNVSFAVFHPTLPIII 244
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 3e-20
Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 31/153 (20%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
+V + + + + + V I+ + + + V + A
Sbjct: 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYE-TQVEVR--SIQVTETPVRAGKFIAR 66
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
++ S D +R+++ T + + H
Sbjct: 67 KNWIIV-GSDDFRIRVFNYNTGEK--------------VVDF------------EAHPDY 99
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200
+ + H T P +LS S D TV++W+ +
Sbjct: 100 IRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWA 131
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 1e-17
Identities = 33/243 (13%), Positives = 69/243 (28%), Gaps = 32/243 (13%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
P+ + + S + KI DY T + + + H S V + + SGS D
Sbjct: 195 LPDKPYMITASDDLTI-KIWDY----QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 73 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ--- 129
++ I+ + E + H T + D +
Sbjct: 250 GTLKIWNS-STYKV--EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPT 306
Query: 130 ------------KSQIMLASGSFDKSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHA 175
+ AS F + ++ + L
Sbjct: 307 LSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAH-- 364
Query: 176 TNPDLLSTASG-DKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFID 234
+P+ D I+ A +++ G+ + W P+ N+ A+ ++ + +
Sbjct: 365 -SPNGRFVTVVGDGEYVIYTALAWRNK---AFGKCQDFVWGPDSNSYALIDETGQIKYYK 420
Query: 235 VVK 237
K
Sbjct: 421 NFK 423
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-09
Identities = 23/256 (8%), Positives = 56/256 (21%), Gaps = 54/256 (21%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
SP + + D + + + K W D A
Sbjct: 365 SPNGRFVTVVG--------DG---EYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDET 413
Query: 73 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 132
+ + + + + S + L D V +D
Sbjct: 414 GQIKYY-----KNFKEVTSWSVPMHSAID--RLFSGALLGV--KSDGFVYFFDWDNGTLV 464
Query: 133 ----------------IMLASGSFDKSVAI-FALDKKGDLNKEVVYRGHTGSVDQLCWHA 175
++ + + + + + + + D
Sbjct: 465 RRIDVNAKDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDE 524
Query: 176 TNPDLLSTASGDKTVRIWD---------------ARTQKSQIIATKGENINITW-APNGN 219
D+L S T W K+ +A + + + N
Sbjct: 525 AF-DVLYELSESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDN 583
Query: 220 TIAVGNKEDLVTFIDV 235
+ + ++E V ++
Sbjct: 584 KVYLADREVHVYGYEI 599
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-27
Identities = 36/182 (19%), Positives = 75/182 (41%), Gaps = 21/182 (11%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATN 108
V W+ + ++ A GS + ++I +++ D + + +V L WH
Sbjct: 95 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH--- 151
Query: 109 PD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
P+ LL+ S D RI+ A ++ + A + + G+L E G
Sbjct: 152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM------PFGELMFE--SSSSCG 203
Query: 167 SVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKS-QIIATKGENIN-ITWAPNGNTIA 222
V +C+ + + ++ S D TV + DA + + +A++ + +T+ + +A
Sbjct: 204 WVHGVCF---SANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVA 260
Query: 223 VG 224
G
Sbjct: 261 AG 262
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-24
Identities = 30/177 (16%), Positives = 57/177 (32%), Gaps = 35/177 (19%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H +V V W+ D R+ + D++ ++ L K +V + + W P
Sbjct: 51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL-KGRTWKPTLVILRINRAARCVRWA---P 106
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+ + SG + + I + + I + +
Sbjct: 107 NEKKFAVGSGSRVISICYFEQENDWWV--------CKHIK--------------KPIRST 144
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIA 222
V L WH P+ LL+ S D RI+ A + ++ + P G +
Sbjct: 145 VLSLDWH---PNSVLLAAGSCDFKCRIFSAYIK--EVEERPAPTPWGSKMPFGELMF 196
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 1e-23
Identities = 26/188 (13%), Positives = 52/188 (27%), Gaps = 41/188 (21%)
Query: 47 YQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 106
+ + AW+ D ++A + V I+ + + H G V + W
Sbjct: 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWA- 61
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
PD + T D+ +W + +V
Sbjct: 62 --PDSNRIVTCGTDRNAYVWTLKG------------------------RTWKPTLVILRI 95
Query: 165 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATK-----GENIN-ITWAP 216
+ + W P+ + SG + + I + + + + W P
Sbjct: 96 NRAARCVRWA---PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152
Query: 217 NGNTIAVG 224
N +A G
Sbjct: 153 NSVLLAAG 160
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 3e-23
Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 25/178 (14%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ E + VH V +S +G R+A S D +V + DKK + T + +
Sbjct: 195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT---LASETLPLLAVT 251
Query: 104 WHATNPD--LLSTASGDKTVRI-WDARTQK--------SQIMLASGSFDKSVAIFALDKK 152
+ + L++ V +D+ K + LDKK
Sbjct: 252 F---ITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308
Query: 153 GDLNKEV-----VYRGHTGSVDQLCWHA---TNPDLLSTASGDKTVRIWDARTQKSQI 202
+ H SV Q+ + T D + IWD R+ +S +
Sbjct: 309 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESAL 366
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 4e-19
Identities = 30/186 (16%), Positives = 51/186 (27%), Gaps = 43/186 (23%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV---------------VYRG 94
S V S+ W + LA+GS D IF+ K +
Sbjct: 141 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 200
Query: 95 HTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQI------------------- 133
G V +C+ + + ++ S D TV + DA + +
Sbjct: 201 SCGWVHGVCF---SANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS 257
Query: 134 MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
++A+G D +F D ++ + G Q K
Sbjct: 258 LVAAGH-DCFPVLFTYDSAA---GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 313
Query: 194 DARTQK 199
A
Sbjct: 314 SAAAGA 319
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 5e-27
Identities = 43/229 (18%), Positives = 77/229 (33%), Gaps = 52/229 (22%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATN 108
H VH V + GR +A+ S D+ + +F LDK + +R H S+ + W
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW---A 66
Query: 109 PD----LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
++++AS DKTV++W+ + + SG +
Sbjct: 67 SPEYGRIIASASYDKTVKLWEEDPDQEE---CSGRRWNKLCTL--------------NDS 109
Query: 165 TGSVDQLCWHATNPD----LLSTASGDKTVRIWDARTQKSQIIATKGENIN--------- 211
GS+ + + P L+ D +R++DA T +
Sbjct: 110 KGSLYSVKFA---PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166
Query: 212 ------ITWAPN---GNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGH 251
++W P+ +AV E + + L GH
Sbjct: 167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL--PGH 213
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 4e-25
Identities = 40/199 (20%), Positives = 72/199 (36%), Gaps = 38/199 (19%)
Query: 48 QAHGSKVHSVAWSCD--GRRLASGSFDKSVAI------FALDKKGDLNKEVVYRGHTGSV 99
+AH S + ++ W+ GR +AS S+DK+V + NK GS+
Sbjct: 54 RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSL 113
Query: 100 DQLCWHATNPD----LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDL 155
+ + P L+ D +R++DA + + L + +
Sbjct: 114 YSVKFA---PAHLGLKLACLGNDGILRLYDALE------------PSDLRSWTLTSEMKV 158
Query: 156 NKEVVYRGHTGSVDQLCWH--ATNPDLLSTASGDKTVRIWDARTQKSQIIAT-KG--ENI 210
H S L W +P+ L+ ++ ++ + + K + A G I
Sbjct: 159 LSIPP-ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLI 217
Query: 211 N-ITWAPN----GNTIAVG 224
I+WAP+ IA G
Sbjct: 218 RSISWAPSIGRWYQLIATG 236
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 8e-23
Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 38/184 (20%)
Query: 48 QAHGSKVHSVAWS---CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 104
H ++W +LA + ++++ K G L+ GH + + W
Sbjct: 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRG-KDGKLHVAAKLPGHKSLIRSISW 222
Query: 105 HATNPD------LLSTASGDKTVRIWDARTQKSQI-------------------MLASGS 139
P L++T D +RI+ + S + M A G
Sbjct: 223 A---PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGR 279
Query: 140 FDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDAR 196
D + A + + + + H G V + W N +LS+A D VR+W A
Sbjct: 280 SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW---NLTGTILSSAGDDGKVRLWKAT 336
Query: 197 TQKS 200
Sbjct: 337 YSNE 340
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 1e-21
Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 51/231 (22%)
Query: 44 IKEYQAHGSKVHSVAWSCD--GRRLASGSFDKSV-----------AIFALDKKGDLNKEV 90
+ ++SV ++ G +LA D + + L + +
Sbjct: 103 LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162
Query: 91 VYRGHTGSVDQLCWH--ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFA 148
H S L W +P+ L+ ++ ++ + + K +
Sbjct: 163 P-ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV--------------- 206
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPD------LLSTASGDKTVRIWDARTQKSQI 202
GH + + W P L++T D +RI+ + S +
Sbjct: 207 ---------AAKLPGHKSLIRSISWA---PSIGRWYQLIATGCKDGRIRIFKITEKLSPL 254
Query: 203 IATKGENINITWA--PNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGH 251
+ + + + + + A G + ++S E H
Sbjct: 255 ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 305
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 6e-13
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 15/121 (12%)
Query: 16 YKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAW--SCDGRRLASGSFDK 73
Y+L+ +G + D ++ F + + S +S + S D A G D
Sbjct: 230 YQLIATGCK-------DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDS 282
Query: 74 SVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 130
+ A + + + + H G V + W N +LS+A D VR+W A
Sbjct: 283 NTEEKAELQSNLQVELLSEHDDHNGEVWSVSW---NLTGTILSSAGDDGKVRLWKATYSN 339
Query: 131 S 131
Sbjct: 340 E 340
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
S + + G + + ++ + E+ H +V SV+W+ G L+S D
Sbjct: 269 SADVDMDAQGRSDSNTEEKAE-LQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDD 327
Query: 73 KSV 75
V
Sbjct: 328 GKV 330
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 6e-27
Identities = 52/269 (19%), Positives = 85/269 (31%), Gaps = 71/269 (26%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHND----IKEYQAHGSKVHSVAWSC--DGRRL 66
K L + S D +K F + I H V V W+ G L
Sbjct: 18 DYYGKRLATCSS-------DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTIL 70
Query: 67 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD----LLSTASGDKTVR 122
AS S+D V I+ + G ++ V+ H+ SV+ + W P LL AS D V
Sbjct: 71 ASCSYDGKVLIWKEE-NGRWSQIAVHAVHSASVNSVQWA---PHEYGPLLLVASSDGKVS 126
Query: 123 IWDARTQKSQI----------------------------------MLASGSFDKSVAIFA 148
+ + + + +G D V I+
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
Query: 149 LDKKGDLNKEV-VYRGHTGSVDQLCWHATNPDLLS-----TASGDKTVRIWDARTQKSQI 202
+ GH+ V + W P +L + S D+T IW ++
Sbjct: 187 YNSDAQTYVLESTLEGHSDWVRDVAWS---PTVLLRSYLASVSQDRTCIIWTQDNEQGPW 243
Query: 203 IATKGENIN-------ITWAPNGNTIAVG 224
T + +W+ +GN +A+
Sbjct: 244 KKTLLKEEKFPDVLWRASWSLSGNVLALS 272
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 1e-25
Identities = 49/228 (21%), Positives = 77/228 (33%), Gaps = 54/228 (23%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHA 106
AH +H G+RLA+ S DK++ IF + +G+ +K + GH G V ++ W A
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIF--EVEGETHKLIDTLTGHEGPVWRVDW-A 62
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
+L++ S D V IW G ++ V+ H
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEEN------------------------GRWSQIAVHAVH 98
Query: 165 TGSVDQLCWHATNPD----LLSTASGDKTVRIWDARTQKSQIIAT-KGENINIT---WAP 216
+ SV+ + W P LL AS D V + + + + I + WAP
Sbjct: 99 SASVNSVQWA---PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155
Query: 217 -------------NGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGH 251
G ++LV T GH
Sbjct: 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 96.9 bits (241), Expect = 5e-23
Identities = 34/199 (17%), Positives = 62/199 (31%), Gaps = 48/199 (24%)
Query: 44 IKEYQAHGSKVHSVAWSCD--GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101
I + H + V+SV W+ G L S D V++ + G + ++ H V+
Sbjct: 92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNS 150
Query: 102 LCWH----------ATNPD--LLSTASGDKTVRIWDARTQKSQ----------------- 132
W + T D V+IW +
Sbjct: 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210
Query: 133 ---------IMLASGSFDKSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD-- 179
LAS S D++ I+ D + K+ + + + W +
Sbjct: 211 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW---SLSGN 267
Query: 180 LLSTASGDKTVRIWDARTQ 198
+L+ + GD V +W +
Sbjct: 268 VLALSGGDNKVTLWKENLE 286
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 3e-16
Identities = 41/248 (16%), Positives = 72/248 (29%), Gaps = 33/248 (13%)
Query: 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD---GRRLASGSFDK 73
+ +G +LV KI Y T+ + H V VAWS LAS S D+
Sbjct: 171 RKFVTGGADNLV-KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229
Query: 74 SVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 129
+ I+ D + K+ + + + W + +L+ + GD V +W +
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW---SLSGNVLALSGGDNKVTLWKENLE 286
Query: 130 KSQIM--------LASGSFDKSVAIFALDK-------KGDLNKEVV-------YRGHTGS 167
SG + F + N E+ R T S
Sbjct: 287 GKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTAS 346
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKE 227
+ + L G V I T+ + ++ N
Sbjct: 347 YTFAKFSTGSMLLTKDIVGKSGVSIKRLPTELQRKFLFDDVYLDKEIEKVTIEARKSNPY 406
Query: 228 DLVTFIDV 235
++ +
Sbjct: 407 PQISESSL 414
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-26
Identities = 34/198 (17%), Positives = 62/198 (31%), Gaps = 35/198 (17%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 98
+ + + V S + LA+G + + L G ++ + H
Sbjct: 151 SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLL--LGLDG--HEIFKEKLHKAK 206
Query: 99 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKE 158
V ++ L++T+S D TV++WD R K D N
Sbjct: 207 VTHAEFNPRCDWLMATSSVDATVKLWDLRNIK-----------------------DKNSY 243
Query: 159 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGEN--------I 210
+ H V+ ++ T+ L T +R++ + + I
Sbjct: 244 IAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPI 303
Query: 211 NITWAPNGNTIAVGNKED 228
TW P + I G D
Sbjct: 304 KATWHPMYDLIVAGRYPD 321
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 5e-25
Identities = 35/223 (15%), Positives = 78/223 (34%), Gaps = 33/223 (14%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTH-NDIKEYQAHGSKVHSVAWSCDGRRL-ASGS 70
S ++L +G + ++I + + H +KV ++ L A+ S
Sbjct: 172 SVSRQMLATGDS-------TGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSS 224
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART-- 128
D +V ++ L D N + H V+ ++ T+ L T +R++ +
Sbjct: 225 VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284
Query: 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 188
+ QI++ + + + + L PD + +
Sbjct: 285 KPDQIIIHPHRQFQHLTPI--------------KATWHPMYDLIVAGRYPDDQLLLNDKR 330
Query: 189 TVRIWDARTQKSQIIAT-KGENIN-----ITWAPNGNTIAVGN 225
T+ I+DA + ++ + N ++P G+ +A G
Sbjct: 331 TIDIYDANS--GGLVHQLRDPNAAGIISLNKFSPTGDVLASGM 371
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 1e-22
Identities = 25/182 (13%), Positives = 52/182 (28%), Gaps = 31/182 (17%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALD-KKGDLNKEVVYRGHTGSVDQLCWHA 106
S +H + S G+ + + F K L++ V L WH
Sbjct: 26 VGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHR--TASPFDRRVTSLEWHP 83
Query: 107 TNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
T+P ++ S + +WD + + G
Sbjct: 84 THPTTVAVGSKGGDIILWDYDV------------------------QNKTSFIQGMGPGD 119
Query: 167 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN----ITWAPNGNTIA 222
++ + ++ N + L +S + D Q+ A + + + +A
Sbjct: 120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLA 179
Query: 223 VG 224
G
Sbjct: 180 TG 181
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 4e-16
Identities = 20/160 (12%), Positives = 46/160 (28%), Gaps = 40/160 (25%)
Query: 50 HGSKVHSVAWS-CDGRRLASGSFDKSVAIFALDKKGDLNKEV-----------VYRGHTG 97
H V++ ++ D +L + + +++ ++ + +
Sbjct: 249 HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWH 308
Query: 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNK 157
+ L PD + +T+ I+DA + G L
Sbjct: 309 PMYDLIVAGRYPDDQLLLNDKRTIDIYDANS------------------------GGLVH 344
Query: 158 EVVYRGHTGSVDQLCWHATNPDLLSTASG-DKTVRIWDAR 196
++ G + + P ASG + IW+
Sbjct: 345 QLRDPNAAGIISLNKFS---PTGDVLASGMGFNILIWNRE 381
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 4e-26
Identities = 47/178 (26%), Positives = 71/178 (39%), Gaps = 31/178 (17%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
I Q H S+V +AW DG +LASG D V I+ H +V +
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT---KTNHNAAVKAVA 266
Query: 104 WHATNPDLLSTASG--DKTVRIWDARTQK--------SQIM----------LAS--GSFD 141
W +LL+T G DK + W+A T SQ+ + S G D
Sbjct: 267 WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPD 326
Query: 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
+++I++ L K+V H V +PD +LSTA+ D+ ++ W
Sbjct: 327 NNLSIWSY-SSSGLTKQVDIPAHDTRVLYSAL---SPDGRILSTAASDENLKFWRVYD 380
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 5e-26
Identities = 43/179 (24%), Positives = 64/179 (35%), Gaps = 44/179 (24%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATN 108
+ V SV WS DG L+ G + V I+ ++ ++ GH V L W N
Sbjct: 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES----QTKLRTMAGHQARVGCLSW---N 185
Query: 109 PDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV 168
+LS+ S + D R QI +GH+ V
Sbjct: 186 RHVLSSGSRSGAIHHHDVRIANHQIG-------------------------TLQGHSSEV 220
Query: 169 DQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENIN----ITWAPNGNTI 221
L W D L++ D V+IWDAR+ S TK + + W P + +
Sbjct: 221 CGLAW---RSDGLQLASGGNDNVVQIWDARS--SIPKFTKTNHNAAVKAVAWCPWQSNL 274
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 4e-23
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 38/184 (20%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
++ H ++V ++W + L+SGS ++ D + ++ +GH+ V L
Sbjct: 169 LRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHH--DVRIANHQIGTLQGHSSEVCGLA 224
Query: 104 WHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
W D L++ D V+IWDAR+ +
Sbjct: 225 W---RSDGLQLASGGNDNVVQIWDARSSIPK--------------------------FTK 255
Query: 162 RGHTGSVDQLCWHATNPDLLSTASG--DKTVRIWDART-QKSQIIATKGENINITWAPNG 218
H +V + W +LL+T G DK + W+A T + + + ++ W+P+
Sbjct: 256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHS 315
Query: 219 NTIA 222
I
Sbjct: 316 KEIM 319
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 1e-14
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 50 HGSKVHSVAWSCDGRRLAS--GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
GS+V S+ WS + + S G D +++I++ L K+V H V
Sbjct: 302 AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY-SSSGLTKQVDIPAHDTRVLYSAL--- 357
Query: 108 NPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDK--SVAI 146
+PD +LSTA+ D+ ++ W + S+ I
Sbjct: 358 SPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSSITI 400
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 35/110 (31%)
Query: 94 GHTGSV--DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDK 151
G + L W N +++ + ++ V +W+A + +
Sbjct: 89 GIIDDYYLNLLDWSNLN--VVA-VALERNVYVWNADSGSVSALAE--------------- 130
Query: 152 KGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 199
+ V + W + D LS G+ V I+D +Q
Sbjct: 131 ----------TDESTYVASVKW---SHDGSFLSVGLGNGLVDIYDVESQT 167
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 4e-06
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 163 GHTGSV--DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINIT---WAPN 217
G + L W N +++ + ++ V +W+A + +A E+ + W+ +
Sbjct: 89 GIIDDYYLNLLDWSNLN--VVA-VALERNVYVWNADSGSVSALAETDESTYVASVKWSHD 145
Query: 218 GNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGH 251
G+ ++VG LV DV + RT+ GH
Sbjct: 146 GSFLSVGLGNGLVDIYDVESQT--KLRTM--AGH 175
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 5e-26
Identities = 54/221 (24%), Positives = 82/221 (37%), Gaps = 51/221 (23%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
SP + L S S D +K K H + VAWS D L S S
Sbjct: 32 SPNGEWLASSSA-------DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 128
DK++ I+ + G K +GH+ V + NP L+ + S D++VRIWD +T
Sbjct: 85 DDKTLKIWDV-SSGKCLK--TLKGHSNYVFCCNF---NPQSNLIVSGSFDESVRIWDVKT 138
Query: 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASG 186
K L H+ V + + N D L+ ++S
Sbjct: 139 GKCLKTL--------------------------PAHSDPVSAVHF---NRDGSLIVSSSY 169
Query: 187 DKTVRIWDARTQKSQIIATKGENINIT---WAPNGNTIAVG 224
D RIWD + + +N ++ ++PNG I
Sbjct: 170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 99.1 bits (248), Expect = 1e-24
Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 41/187 (21%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+K AH V +V ++ DG + S S+D I+ G K ++ V +
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-ASGQCLKTLI-DDDNPPVSFVK 199
Query: 104 WHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
+ +P+ + A+ D T+++WD K Y
Sbjct: 200 F---SPNGKYILAATLDNTLKLWDYSKGKCL--------------------------KTY 230
Query: 162 RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT----KGENINITWA 215
GH + + + + + S D V IW+ +T+ +I+ I+
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK--EIVQKLQGHTDVVISTACH 288
Query: 216 PNGNTIA 222
P N IA
Sbjct: 289 PTENIIA 295
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 9e-23
Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 39/152 (25%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H V SV +S +G LAS S DK + I+ G K GH + + W +
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEK--TISGHKLGISDVAW---SS 75
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
D LL +AS DKT++IWD + K L +GH+
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTL--------------------------KGHSNY 109
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDART 197
V + NP L+ + S D++VRIWD +T
Sbjct: 110 VFCCNF---NPQSNLIVSGSFDESVRIWDVKT 138
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 2e-14
Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 53/166 (31%)
Query: 67 ASGSFDKSVAIFALDKKGDLNKEVVY--RGHTGSVDQLCWHATNPD--LLSTASGDKTVR 122
A+ S V N + + GHT +V + + P+ L+++S DK ++
Sbjct: 1 ATQSKPTPVK---------PNYALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIK 48
Query: 123 IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--L 180
IW A K + + GH + + W + D L
Sbjct: 49 IWGAYDGKFEKTI--------------------------SGHKLGISDVAW---SSDSNL 79
Query: 181 LSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIA 222
L +AS DKT++IWD + + + T KG + + P N I
Sbjct: 80 LVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIV 123
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 8e-26
Identities = 7/220 (3%), Positives = 24/220 (10%), Gaps = 39/220 (17%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
+ + + H +
Sbjct: 75 PQDIIVQSARPY-------GQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLI 127
Query: 71 FDKSVAIFALDKKGDLNKEV----VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 126
K+ L + A N S +
Sbjct: 128 LTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVL 187
Query: 127 RTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG 186
+ + + + + +
Sbjct: 188 QMRGTILPGHKWDV---------------------MVDLFFYRDPEEAKEQEEEEAALVA 226
Query: 187 DKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIA 222
+ + + + P
Sbjct: 227 PDYGAVAEYAAPA-ADTWGGEWGTDAAAQPAAIPAQAGAD 265
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 3e-23
Identities = 11/214 (5%), Positives = 31/214 (14%), Gaps = 40/214 (18%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ ++ I+ + G + + + +
Sbjct: 18 DIQMMLAADVHLGTKNCDFQMER-YVYKRRTDGIYII-NLGKTWE--KLQLAARVIVAIE 73
Query: 104 WHATNPD--LLSTASGDKTVRIWDARTQK---------SQIM----------LASGSFDK 142
D + S + + A+
Sbjct: 74 N---PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTD 130
Query: 143 SVAIFALDKKGDLNKEV----VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 198
K+ L + A N S + + +
Sbjct: 131 PRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMR 190
Query: 199 KS----QIIATKGENINIT----WAPNGNTIAVG 224
+ + A
Sbjct: 191 GTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAAL 224
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-25
Identities = 31/202 (15%), Positives = 60/202 (29%), Gaps = 33/202 (16%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
AH V + WS DG ++AS S DK++ I+ + + K + G QL T
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA-TLKVEKTIP-VGTRIEDQQLGIIWT 293
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQI-------------------MLASGSFDKSVAIFA 148
L + S + + + L S + + +
Sbjct: 294 K-QALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW- 351
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPD-LLSTASGDKTVRIWDARTQKSQIIATKG 207
D ++ V H + + L T S D +++ A
Sbjct: 352 -DISTGISNRVFPDVHATMITGIKTT---SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVA 407
Query: 208 ENIN-----ITWAPNGNTIAVG 224
++ + + +G+
Sbjct: 408 NKLSSQPLGLAVSADGDIAVAA 429
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-25
Identities = 35/218 (16%), Positives = 64/218 (29%), Gaps = 49/218 (22%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
S + + + ++ ++ + ++ VA S D + +A G D
Sbjct: 420 SADGDIAVAAC--------YKHIAIYSHGKLTEVPISYN--SSCVALSNDKQFVAVGGQD 469
Query: 73 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 130
V ++ G EV H + + + + L + V +
Sbjct: 470 SKVHVY--KLSGASVSEVKTIVHPAEITSVAFS---NNGAFLVATDQSRKVIPYSVANNF 524
Query: 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDK 188
L + HT V + W +PD L+T S D
Sbjct: 525 E-----------------------LAHTNSWTFHTAKVACVSW---SPDNVRLATGSLDN 558
Query: 189 TVRIWDARTQKSQIIATKGEN----INITWAPNGNTIA 222
+V +W+ I KG + +N N TI
Sbjct: 559 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIV 596
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 5e-23
Identities = 32/211 (15%), Positives = 68/211 (32%), Gaps = 36/211 (17%)
Query: 20 PSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFA 79
P+G + Y + D + Y H + S G ASG +V I+
Sbjct: 28 PAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD 87
Query: 80 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASG--DKTVRIWDARTQKSQIML 135
+ + K +G V + W + ++ ++ ++ T S
Sbjct: 88 TTQTTHILKT-TIPVFSGPVKDISWD---SESKRIAAVGEGRERFGHVFLFDTGTS---- 139
Query: 136 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 195
G+L G +++ + + + P + + S D TV I++
Sbjct: 140 ----------------NGNL------TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 177
Query: 196 RTQK-SQIIATKGENIN-ITWAPNGNTIAVG 224
K + ++ + + P+G+ A
Sbjct: 178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 4e-21
Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 34/151 (22%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H +++ SVA+S +G L + + V +++ +L + HT V + W
Sbjct: 488 IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW--- 544
Query: 108 NPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165
+PD L+T S D +V +W+ + ++ H
Sbjct: 545 SPDNVRLATGSLDNSVIVWNMNK------------------------PSDHPIIIKGAHA 580
Query: 166 GSVDQLCWHATNPD--LLSTASGDKTVRIWD 194
S + + +A D ++ W+
Sbjct: 581 MSSVNSVIW---LNETTIVSAGQDSNIKFWN 608
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 2e-15
Identities = 19/159 (11%), Positives = 43/159 (27%), Gaps = 44/159 (27%)
Query: 50 HGSKVHSVAWSCDGRRL--ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
+ + G ++ +G+ +V + G L +Y H+
Sbjct: 17 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPV------GSLTDTEIYTEHSHQTTVAKT--- 67
Query: 108 NPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165
+P ++ VRIWD + I+ +
Sbjct: 68 SPSGYYCASGDVHGNVRIWDTTQ-TTHILKT-----------------------TIPVFS 103
Query: 166 GSVDQLCWHATNPD--LLSTASG--DKTVRIWDARTQKS 200
G V + W + ++ ++ ++ T S
Sbjct: 104 GPVKDISWD---SESKRIAAVGEGRERFGHVFLFDTGTS 139
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 3e-04
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSV 75
I AH + + + S D ++
Sbjct: 573 IIIKGAHAMSSVNSVIWLNETTIVSAGQDSNI 604
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-24
Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 55/198 (27%)
Query: 48 QAHGSKVHSVAWS-CDGRRLASGSFDKSVAIFALDKKGDLN--KEVVYRGHTGSVDQLCW 104
H V +V W D S SFDK++ ++ D N + +V
Sbjct: 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVW------DTNTLQTADVFNFEETVYSHHM 149
Query: 105 H--ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYR 162
+T L++ + V++ D ++ +L +
Sbjct: 150 SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL--------------------------Q 183
Query: 163 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN----------- 211
GH + + W +L+TAS D V++WD R +I N
Sbjct: 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243
Query: 212 -------ITWAPNGNTIA 222
+ + +G +
Sbjct: 244 HNGKVNGLCFTSDGLHLL 261
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 3e-23
Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 22/187 (11%)
Query: 50 HGSKVHSVAWSCDGRR---LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 106
V+S S + +A G+ V + L K G + + +GH + + W
Sbjct: 140 FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL-KSGSCSH--ILQGHRQEILAVSWSP 196
Query: 107 TNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
+L+TAS D V++WD R ++ + K E H G
Sbjct: 197 RYDYILATASADSRVKLWDVRRASGCLITLDQH----------NGKKSQAVESANTAHNG 246
Query: 167 SVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVG 224
V+ LC+ D L T D +R+W++ + + G+ N + T++ G
Sbjct: 247 KVNGLCFT---SDGLHLLTVGTDNRMRLWNSSNGE-NTLVNYGKVCNNSKKGLKFTVSCG 302
Query: 225 NKEDLVT 231
+ V
Sbjct: 303 CSSEFVF 309
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 4e-23
Identities = 25/173 (14%), Positives = 59/173 (34%), Gaps = 40/173 (23%)
Query: 40 THNDIKEYQAHGSKVHSVAWS-CDGRRLASGSFDKSVAI----------FALDKKGDLNK 88
+ D + HG ++++ +GR + SG D + + + K
Sbjct: 32 LNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIG 91
Query: 89 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFA 148
H SV+ + W+ + + +++S DKT+++WD T ++ +
Sbjct: 92 RDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF------------- 138
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWH--ATNPDLLSTASGDKTVRIWDARTQK 199
+V +T L++ + V++ D ++
Sbjct: 139 --------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 7e-22
Identities = 22/181 (12%), Positives = 49/181 (27%), Gaps = 35/181 (19%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAI--FALDKKGDLNKEVVYRGHTGSVDQLCWH 105
AH KV+ + ++ DG L + D + + + + +N V +
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC 301
Query: 106 ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165
+ + + T+ ++ + + ML +GH
Sbjct: 302 GCSSEFVF-VPYGSTIAVYTVYSGEQITML--------------------------KGHY 334
Query: 166 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAV 223
+VD + + L + S D + W + + P
Sbjct: 335 KTVDCCVFQ---SNFQELYSGSRDCNILAWVPSLYE-PVPDDDETTTKSQLNPAFEDAWS 390
Query: 224 G 224
Sbjct: 391 S 391
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 8e-17
Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 24/175 (13%)
Query: 56 SVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA 115
S + L + + + L+ D + V R H G ++ L + +
Sbjct: 6 SARQTGLEDPLRLRRAESTRRVLGLELNKDRD---VERIHGGGINTLDIEPVEGRYMLSG 62
Query: 116 SGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 175
D + ++D Q + H SV+ + W+
Sbjct: 63 GSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP-------------DVHRYSVETVQWYP 109
Query: 176 TNPDLLSTASGDKTVRIWDARTQKSQIIATKG--ENIN-ITWAPNGNT---IAVG 224
+ + +++S DKT+++WD T Q E + +P +AVG
Sbjct: 110 HDTGMFTSSSFDKTLKVWDTNTL--QTADVFNFEETVYSHHMSPVSTKHCLVAVG 162
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 4e-24
Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 60/221 (27%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
+ + SV +S DG+ LA+G+ D+ + I+ + + + + +GH + L +
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI-ENRKIVM--ILQGHEQDIYSLDY--- 173
Query: 108 NPD--LLSTASGDKTVRIWDARTQKSQI-------------------MLASGSFDKSV-- 144
P L + SGD+TVRIWD RT + + +A+GS D++V
Sbjct: 174 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 145 -------AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDA 195
+ LD + + GH SV + + D + + S D++V++W+
Sbjct: 234 WDSETGFLVERLDSENE-----SGTGHKDSVYSVVFT---RDGQSVVSGSLDRSVKLWNL 285
Query: 196 RTQKSQ---IIATKGENIN-----------ITWAPNGNTIA 222
+ ++ G + N I
Sbjct: 286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 326
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-23
Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 45/164 (27%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSV---------AIFALDKKGDLNKEVVYRGHTGSVD 100
H V+SV ++ DG+ + SGS D+SV EV Y GH V
Sbjct: 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 314
Query: 101 QLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKE 158
+ + + + S D+ V WD ++ +ML
Sbjct: 315 SVAT---TQNDEYILSGSKDRGVLFWDKKSGNPLLML----------------------- 348
Query: 159 VVYRGHTGSVDQLCW---HATNPD--LLSTASGDKTVRIWDART 197
+GH SV + + P+ + +T SGD RIW +
Sbjct: 349 ---QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 9e-22
Identities = 33/204 (16%), Positives = 77/204 (37%), Gaps = 35/204 (17%)
Query: 31 IDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSV---AIFALDKKGDLN 87
+D Y+ +N H + D + + ++ ++ +++
Sbjct: 1 MDHYLVPYNQ------RANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREID 54
Query: 88 KEVV-YRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSV 144
E+ HT V + + + D L+T +KT +++ L+ S
Sbjct: 55 VELHKSLDHTSVVCCVKF---SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDS----- 105
Query: 145 AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQI 202
A +K + + +C+ +PD L+T + D+ +RIWD + +I
Sbjct: 106 ---AANKDPENLNTSSSPSSDLYIRSVCF---SPDGKFLATGAEDRLIRIWDIENR--KI 157
Query: 203 IAT-KG--ENIN-ITWAPNGNTIA 222
+ +G ++I + + P+G+ +
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLV 181
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 4e-14
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY--RGHT 96
N+ Y H V SVA + + + SGS D+ V + + + +GH
Sbjct: 298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK-----SGNPLLMLQGHR 352
Query: 97 GSVDQLCW---HATNPD--LLSTASGDKTVRIWDART 128
SV + + P+ + +T SGD RIW +
Sbjct: 353 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 4e-24
Identities = 57/223 (25%), Positives = 81/223 (36%), Gaps = 53/223 (23%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
+ +LL S SQ D + T N + S V + A++ G +A G
Sbjct: 64 GTDSRLLLSASQ-------DGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 71 FDKSVAIFALDKKGDLNKEVVY--RGHTGSVDQLCWHATNPD-LLSTASGDKTVRIWDAR 127
D +I+ L K + N V GHTG + + D + T+SGD T +WD
Sbjct: 117 LDNICSIYNL-KTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTSSGDTTCALWDIE 172
Query: 128 TQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTAS 185
T + GHTG V L PD L + +
Sbjct: 173 TGQQTTTF--------------------------TGHTGDVMSLSL---APDTRLFVSGA 203
Query: 186 GDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIAVG 224
D + ++WD R T G +IN I + PNGN A G
Sbjct: 204 CDASAKLWDVREG--MCRQTFTGHESDINAICFFPNGNAFATG 244
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 5e-23
Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 46/185 (24%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDL---NKEVVYRGHTGSVDQLCWHA 106
H +K++++ W D R L S S D + I+ D NK + V +
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIW------DSYTTNKVHAIPLRSSWVMTCAY-- 105
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
P ++ D I++ +T++ + ++ GH
Sbjct: 106 -APSGNYVACGGLDNICSIYNLKTREGNVRVSR----------------------ELAGH 142
Query: 165 TGSVDQLCWHATNPD-LLSTASGDKTVRIWDARTQKSQIIAT----KGENINITWAPNGN 219
TG + + D + T+SGD T +WD T Q T G+ ++++ AP+
Sbjct: 143 TGYLSCCRFL---DDNQIVTSSGDTTCALWDIET--GQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 220 TIAVG 224
G
Sbjct: 198 LFVSG 202
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 1e-19
Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 37/149 (24%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H S ++++ + +G A+GS D + +F L + + + + + +
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITSVSF---SK 280
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
LL D +WDA +L GH
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVL--------------------------AGHDNR 314
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWD 194
V L D ++T S D ++IW+
Sbjct: 315 VSCLGV---TDDGMAVATGSWDSFLKIWN 340
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 9e-14
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 19/119 (15%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHND--IKEYQAHGSK--VHSVAWSCDGRRLAS 68
P +GS D + F+ D + Y + SV++S GR L +
Sbjct: 235 FPNGNAFATGSD-------DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 69 GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWD 125
G D + ++ K D V GH V L D ++T S D ++IW+
Sbjct: 288 GYDDFNCNVWDA-LKADRAG--VLAGHDNRVSCLGV---TDDGMAVATGSWDSFLKIWN 340
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 5e-24
Identities = 30/226 (13%), Positives = 58/226 (25%), Gaps = 35/226 (15%)
Query: 42 NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101
++ QA + + L S+D S+ ++ D + + + +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 102 LCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
+ + + + D S L
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL-------------------------- 95
Query: 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAP----- 216
+ ++ D L AS D + + D R +IA K N N T
Sbjct: 96 TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT 155
Query: 217 ---NGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSLW 259
N + + VG V + + S G + R +
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES-GLKYQIRDVA 200
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 4e-13
Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 19/186 (10%)
Query: 44 IKEYQAHGSKVHSVAWSCD--GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101
+K ++ +KV + ++ D RL G + V F L D N + G +
Sbjct: 139 VKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD 198
Query: 102 LCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
+ + + +S D V + Q + + +
Sbjct: 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC-----------HRLNLKD 247
Query: 162 RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENINIT-WAPNG 218
V+ + + P L TA D + W+ +T+K K ++ A +
Sbjct: 248 TNLAYPVNSIEFS---PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
Query: 219 NTIAVG 224
N + +
Sbjct: 305 NILCLA 310
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 8e-09
Identities = 34/205 (16%), Positives = 59/205 (28%), Gaps = 48/205 (23%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVA-WSCDGRRLASGSF 71
L G V + N E ++ VA + A S
Sbjct: 157 DTNSSRLIVGMNNSQVQWFR--LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI 214
Query: 72 DKSVAIFALDKKGDL------------NKEVVYRGHTGSVDQLCWHATNPD--LLSTASG 117
D VA+ D +GD + V+ + + P L TA
Sbjct: 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS---PRHKFLYTAGS 271
Query: 118 DKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 177
D + W+ +T+K A + + SV ++ A +
Sbjct: 272 DGIISCWNLQTRKKIKNFA-------------------------KFNEDSVVKI---ACS 303
Query: 178 PDLLSTASGDKTVRIWDARTQKSQI 202
++L A+ D T + A Q ++
Sbjct: 304 DNILCLATSDDTFKTNAAIDQTIEL 328
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 9e-24
Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 44 IKEYQAHGSKVHSV-AWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 102
++ V D +++ SG D ++ I+ + + + GHTGSV L
Sbjct: 123 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDK-NTLECKR--ILTGHTGSV--L 177
Query: 103 CWHATNPDLLSTASGDKTVRIWDARTQK-----------------SQIMLASGSFDKSVA 145
C + ++ T S D TVR+WD T + + M+ + S D+S+A
Sbjct: 178 CL-QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 236
Query: 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
++ + D+ V GH +V+ + + + +ASGD+T+++W+ T
Sbjct: 237 VWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTST 285
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 1e-20
Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 34/154 (22%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ H V + + + + + S D+S+A++ + D+ V GH +V+ +
Sbjct: 206 LNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 263
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
+ + +ASGD+T+++W+ T + L G
Sbjct: 264 FD---DKYIVSASGDRTIKVWNTSTCEFVRTL--------------------------NG 294
Query: 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
H + L L+ + S D T+R+WD
Sbjct: 295 HKRGIACL---QYRDRLVVSGSSDNTIRLWDIEC 325
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-17
Identities = 25/156 (16%), Positives = 56/156 (35%), Gaps = 28/156 (17%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
++ H + + + R + SGS D ++ ++ + + G + V GH V +
Sbjct: 289 VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI-ECGACLR--VLEGHEELVRCIR 343
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
+ + + + + D +++WD A +
Sbjct: 344 F---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR-----------------TLVE 383
Query: 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 199
H+G V +L + + + ++S D T+ IWD
Sbjct: 384 HSGRVFRLQF---DEFQIVSSSHDDTILIWDFLNDP 416
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 4e-10
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 11/107 (10%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAI------FALDKKGDLNKEVVYRGHTGSVDQ 101
+ H V + + D +R+ SG++D + + H+G V +
Sbjct: 333 EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 390
Query: 102 LCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFA 148
L + + + ++S D T+ IWD + S ++ +
Sbjct: 391 LQF---DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYIS 434
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 9e-24
Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 47/200 (23%)
Query: 36 KHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH 95
K+ N K H + + + +++ ++ + S D + A++ + + G L + + GH
Sbjct: 139 KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDV-ESGQLLQ--SFHGH 195
Query: 96 TGSVDQLCWHATNPD----LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDK 151
V L P + DK +WD R+ +
Sbjct: 196 GADVLCLDL---APSETGNTFVSGGCDKKAMVWDMRSGQCVQAF---------------- 236
Query: 152 KGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGEN 209
H V+ + ++ P ++ S D T R++D R + ++ E+
Sbjct: 237 ----------ETHESDVNSVRYY---PSGDAFASGSDDATCRLYDLRADR-EVAIYSKES 282
Query: 210 IN-----ITWAPNGNTIAVG 224
I + ++ +G + G
Sbjct: 283 IIFGASSVDFSLSGRLLFAG 302
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 2e-22
Identities = 30/189 (15%), Positives = 61/189 (32%), Gaps = 43/189 (22%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDK-----SVAIFALDKKGDLNKEVVY------RGHT 96
+ + L ++ V + + ++ + + V +GH
Sbjct: 5 DGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHG 64
Query: 97 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK---------SQIM----------L 135
V + W D + ++S D V +WD+ T + +M +
Sbjct: 65 NKVLCMDWC---KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 121
Query: 136 ASGSFDKSVAIFALDKKGDLNKEVVYR---GHTGSVDQLCWHATNPD--LLSTASGDKTV 190
A G D +++ L + N + HT + + + TASGD T
Sbjct: 122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF---TNSDMQILTASGDGTC 178
Query: 191 RIWDARTQK 199
+WD + +
Sbjct: 179 ALWDVESGQ 187
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 3e-18
Identities = 30/154 (19%), Positives = 49/154 (31%), Gaps = 37/154 (24%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
++ ++ H S V+SV + G ASGS D + ++ L + +
Sbjct: 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL-RADREVAIYSKESIIFGASSVD 291
Query: 104 WHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
+ LL D T+ +WD +L
Sbjct: 292 FS---LSGRLLFAGYNDYTINVWDVLKGSRVSIL-------------------------- 322
Query: 162 RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIW 193
GH V L +PD + S D T+R+W
Sbjct: 323 FGHENRVSTLRV---SPDGTAFCSGSWDHTLRVW 353
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 5e-12
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 19/118 (16%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHND--IKEYQAHGSK--VHSVAWSCDGRRLAS 68
P SGS D + ++ D + Y SV +S GR L +
Sbjct: 249 YPSGDAFASGSD-------DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 301
Query: 69 GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIW 124
G D ++ ++ + KG + GH V L +PD + S D T+R+W
Sbjct: 302 GYNDYTINVWDV-LKGSRVS--ILFGHENRVSTLRV---SPDGTAFCSGSWDHTLRVW 353
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 1e-23
Identities = 43/220 (19%), Positives = 76/220 (34%), Gaps = 54/220 (24%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
S + S S D +++ IK A ++A+S D + LA+G+
Sbjct: 89 SHTLPIAASSSL-------DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT 141
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 128
V IF + + G E + + + +PD L++ + D + I+D T
Sbjct: 142 HVGKVNIFGV-ESGKK--EYSLDTRGKFILSIAY---SPDGKYLASGAIDGIINIFDIAT 195
Query: 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASG 186
K L GH + L + PD LL TAS
Sbjct: 196 GKLLHTL--------------------------EGHAMPIRSLTFS---PDSQLLVTASD 226
Query: 187 DKTVRIWDARTQKSQIIAT----KGENINITWAPNGNTIA 222
D ++I+D + + + T +N+ + P+
Sbjct: 227 DGYIKIYDVQH--ANLAGTLSGHASWVLNVAFCPDDTHFV 264
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 92.1 bits (230), Expect = 5e-22
Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 43/191 (22%)
Query: 44 IKEYQAHGSKVHSVAWSCDGR----RLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV 99
K+ QAH + SVAW + + + +GS D V ++ L+ + GH V
Sbjct: 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR-DERLDLQWSLEGHQLGV 83
Query: 100 DQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNK 157
+ + + +++S D +R+WD K +
Sbjct: 84 VSVDI---SHTLPIAASSSLDAHIRLWDLENGKQIKSI---------------------- 118
Query: 158 EVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART-QKSQIIATKGENIN-IT 213
L + +PD L+T + V I+ + +K + T+G+ I I
Sbjct: 119 ----DAGPVDAWTLAF---SPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA 171
Query: 214 WAPNGNTIAVG 224
++P+G +A G
Sbjct: 172 YSPDGKYLASG 182
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 90.2 bits (225), Expect = 2e-21
Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 45/181 (24%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H V SV S AS S D + ++ L + G K L + +P
Sbjct: 79 HQLGVVSVDISHTLPIAASSSLDAHIRLWDL-ENGKQIK--SIDAGPVDAWTLAF---SP 132
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
D L+T + V I+ + K + L
Sbjct: 133 DSQYLATGTHVGKVNIFGVESGKKEYSL--------------------------DTRGKF 166
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTI 221
+ + + +PD L++ + D + I+D T +++ T +G I +T++P+ +
Sbjct: 167 ILSIAY---SPDGKYLASGAIDGIINIFDIATG--KLLHTLEGHAMPIRSLTFSPDSQLL 221
Query: 222 A 222
Sbjct: 222 V 222
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 90.2 bits (225), Expect = 2e-21
Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 39/150 (26%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H + S+ +S D + L + S D + I+ + + +L GH V + + P
Sbjct: 205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDV-QHANLAG--TLSGHASWVLNVAF---CP 258
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
D ++S DK+V++WD T+ H
Sbjct: 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTF--------------------------FDHQDQ 292
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDA 195
V + + N + + + D+ + I+D
Sbjct: 293 VWGVKY---NGNGSKIVSVGDDQEIHIYDC 319
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 69.4 bits (171), Expect = 6e-14
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 23/121 (19%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
SP+ +LL + S D Y+K N H S V +VA+ D S S
Sbjct: 215 SPDSQLLVTASD-------DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS 267
Query: 71 FDKSVAIFALDKKGDLN--KEV-VYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWD 125
DKSV ++ D+ V + H V + + N + + + D+ + I+D
Sbjct: 268 SDKSVKVW------DVGTRTCVHTFFDHQDQVWGVKY---NGNGSKIVSVGDDQEIHIYD 318
Query: 126 A 126
Sbjct: 319 C 319
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 3e-13
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 41/168 (24%)
Query: 66 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP---DLLSTASGDKTVR 122
S + + G L K + H ++ + W + + T S D V+
Sbjct: 5 HHHSSRENLYFQGTN-QYGILFK--QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVK 61
Query: 123 IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--L 180
+W R ++ + GH V + + +
Sbjct: 62 VWKWRDERLDLQW------------------------SLEGHQLGVVSVDI---SHTLPI 94
Query: 181 LSTASGDKTVRIWDARTQKSQIIAT----KGENINITWAPNGNTIAVG 224
+++S D +R+WD + I + + + ++P+ +A G
Sbjct: 95 AASSSLDAHIRLWDLENG--KQIKSIDAGPVDAWTLAFSPDSQYLATG 140
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 1e-23
Identities = 40/234 (17%), Positives = 81/234 (34%), Gaps = 53/234 (22%)
Query: 6 IQFHTPKSPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAH-----GSKVHSVA 58
+QF+ S E L + + V ++ +I+ Q++ ++ A
Sbjct: 24 VQFN-WHSKEGDPLVFATVG------SNRVTLYECHSQGEIRLLQSYVDADADENFYTCA 76
Query: 59 WSCDGRR----LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST 114
W+ D LA + I K Y GH ++++L +H +P+LL +
Sbjct: 77 WTYDSNTSHPLLAVAGSRGIIRIINP-ITMQCIKH--YVGHGNAINELKFHPRDPNLLLS 133
Query: 115 ASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 174
S D +R+W+ +T D VAIF GH V +
Sbjct: 134 VSKDHALRLWNIQT------------DTLVAIFG-----------GVEGHRDEVLSADYD 170
Query: 175 ATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNK 226
+ + D ++++W +++ + + + PN ++
Sbjct: 171 ---LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD----YNPNKTNRPFISQ 217
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 6e-19
Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 67/221 (30%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H +V S + G ++ S D S+ ++ +N + + S D NP
Sbjct: 160 HRDEVLSADYDLLGEKIMSCGMDHSLKLW------RINSKRMMNAIKESYDY------NP 207
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
+ + + + D T+ H VD
Sbjct: 208 NKTNRPFISQKIHFPDFSTR--------------------------------DIHRNYVD 235
Query: 170 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINIT------------WA-- 215
+ W DL+ + S + + W + I K N+T W
Sbjct: 236 CVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR 292
Query: 216 ----PNGNTIAVGNKEDLVTFI-DVVKSLPPRERTLTSRGH 251
+A+GN + ++ D+ P + + T H
Sbjct: 293 FSMDFWQKMLALGN-QVGKLYVWDLEVEDPHKAKCTTLTHH 332
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 5e-16
Identities = 23/174 (13%), Positives = 47/174 (27%), Gaps = 53/174 (30%)
Query: 43 DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV----------- 91
D H + V V W G + S S + ++ + K D ++
Sbjct: 223 DFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGR 280
Query: 92 YRGHTGSVDQLCWHATNPD----LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIF 147
+ + + + D +L+ + + +WD
Sbjct: 281 FDYSQCDIWYMRFS---MDFWQKMLALGNQVGKLYVWDLEV------------------- 318
Query: 148 ALDKKGDLNKEVVY--RGHT--GSVDQLCWHATNPD--LLSTASGDKTVRIWDA 195
D +K H ++ Q + D +L D ++ WD
Sbjct: 319 -----EDPHKAKCTTLTHHKCGAAIRQTSFS---RDSSILIAVCDDASIWRWDR 364
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 3e-10
Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 37/117 (31%)
Query: 94 GHTGSVDQLCWHATNPD---LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALD 150
H + + ++ + + L+ G V +++ +Q +L
Sbjct: 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLL--------------- 60
Query: 151 KKGDLNKEVVYRGHTG-----SVDQLCW---HATNPDLLSTASGDKTVRIWDARTQK 199
+ + + W T+ LL+ A +RI + T +
Sbjct: 61 -----------QSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ 106
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 1e-23
Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 43/234 (18%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
E +LL G + ++ + + + + + H V S+++ + SGS+D
Sbjct: 68 DSEKELLLFGGKDTMINGVP--LFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWD 123
Query: 73 KSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 131
K+ ++ V + H SV + + + TAS DKT+++W
Sbjct: 124 KTAKVW------KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIK 177
Query: 132 QIM-----------------LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 174
S S D + + + GD+ + Y GH V +
Sbjct: 178 TFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDM-HTGDVLRT--YEGHESFVYCIKL- 233
Query: 175 ATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KGENINI---TWAPNGNTIA 222
P+ ++S D+TVRIW + I+I NG+ I
Sbjct: 234 --LPNGDIVS-CGEDRTVRIWSKEN--GSLKQVITLPAISIWSVDCMSNGDIIV 282
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 1e-22
Identities = 26/157 (16%), Positives = 48/157 (30%), Gaps = 31/157 (19%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 98
+ ++SV + + L G D + L + GH G+
Sbjct: 47 DDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN 106
Query: 99 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKE 158
V L + ++ + S DKT ++W +
Sbjct: 107 VCSLSF---QDGVVISGSWDKTAKVWKEGSLVY--------------------------- 136
Query: 159 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 195
+ H SV + + + TAS DKT+++W
Sbjct: 137 -NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 3e-17
Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 42/181 (23%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H V V D ++AS S D +V +++ D + V G ++ +C+ +
Sbjct: 17 HDQDVRDVVAV-DDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCY---DS 69
Query: 110 D--LLSTASGDKTVR---IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
+ LL D + ++ + L GH
Sbjct: 70 EKELLLFGGKDTMINGVPLFATSGEDPLYTL--------------------------IGH 103
Query: 165 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITW-APNGNTIAV 223
G+V L + ++ + S DKT ++W + + A + + + N
Sbjct: 104 QGNVCSLSF---QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLT 160
Query: 224 G 224
Sbjct: 161 A 161
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 5e-16
Identities = 30/153 (19%), Positives = 51/153 (33%), Gaps = 38/153 (24%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108
H V +A DG S S D + + + GD+ + Y GH V +
Sbjct: 182 IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDM-HTGDVLRT--YEGHESFVYCIKL---L 234
Query: 109 PD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
P+ ++S D+TVRIW + ++
Sbjct: 235 PNGDIVS-CGEDRTVRIWSKENGSLKQVI--------------------------TLPAI 267
Query: 167 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 199
S+ + + N D++ S D VRI+ +
Sbjct: 268 SIWSVDCMS-NGDIIV-GSSDNLVRIFSQEKSR 298
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 4e-10
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
++ Y+ H S V+ + +G + S D++V I++ + G L + V S+ +
Sbjct: 218 LRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSK-ENGSLKQ--VITLPAISIWSVD 273
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQK 130
+ N D++ S D VRI+ +
Sbjct: 274 CMS-NGDIIV-GSSDNLVRIFSQEKSR 298
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 2e-23
Identities = 43/240 (17%), Positives = 82/240 (34%), Gaps = 43/240 (17%)
Query: 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD-GRRLASGSFDKSV 75
SG + + H V +A + + S S DK++
Sbjct: 5 HHHSSGVDLGTE-NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTI 63
Query: 76 AIFALDKKGDLNKEVVY--RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKS 131
++ L + RGH+ V + D + S D T+R+WD T +
Sbjct: 64 IMWKLTRDETNYGIPQRALRGHSHFVSDVVIS---SDGQFALSGSWDGTLRLWDLTTGTT 120
Query: 132 QI-------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 172
+ SGS DK++ ++ + G V H+ V +
Sbjct: 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW--NTLGVCKYTVQDESHSEWVSCVR 178
Query: 173 WHATNPD----LLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIAVG 224
+ P+ ++ + DK V++W+ ++ G +N +T +P+G+ A G
Sbjct: 179 FS---PNSSNPIIVSCGWDKLVKVWNLANC--KLKTNHIGHTGYLNTVTVSPDGSLCASG 233
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 3e-23
Identities = 44/214 (20%), Positives = 78/214 (36%), Gaps = 47/214 (21%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H V SVA+S D R++ SGS DK++ ++ + G V H+ V + + P
Sbjct: 127 HTKDVLSVAFSSDNRQIVSGSRDKTIKLW--NTLGVCKYTVQDESHSEWVSCVRFS---P 181
Query: 110 D----LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165
+ ++ + DK V++W+ K + GHT
Sbjct: 182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNH--------------------------IGHT 215
Query: 166 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENIN-ITWAPNGNTIA 222
G ++ + PD L ++ D +WD K G+ IN + ++PN +
Sbjct: 216 GYLNTVTVS---PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 272
Query: 223 VGNKE-----DLVTFIDVVKSLPPRERTLTSRGH 251
DL +V L + +S+
Sbjct: 273 AATGPSIKIWDLEG-KIIVDELKQEVISTSSKAE 305
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 1e-18
Identities = 32/155 (20%), Positives = 51/155 (32%), Gaps = 38/155 (24%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK-EVVY--RGHTGSVDQLCWHA 106
H +++V S DG ASG D ++ DLN+ + +Y G ++ LC+
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLW------DLNEGKHLYTLDGG-DIINALCFS- 265
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
P+ L A+ +++IWD + L S +
Sbjct: 266 --PNRYWLCAAT-GPSIKIWDLEGKIIVDELKQEVISTS-----------------SKAE 305
Query: 165 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
L W D L D VR+W
Sbjct: 306 PPQCTSLAWS---ADGQTLFAGYTDNLVRVWQVTI 337
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 8e-18
Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 27/141 (19%)
Query: 62 DGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNPDLLSTASGDKT 120
+SG + ++ + +GH G V Q+ PD++ +AS DKT
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKT 62
Query: 121 VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD- 179
+ +W ++ + + RGH+ V + D
Sbjct: 63 IIMWKLTRDETNYGIPQRAL---------------------RGHSHFVSDVVIS---SDG 98
Query: 180 -LLSTASGDKTVRIWDARTQK 199
+ S D T+R+WD T
Sbjct: 99 QFALSGSWDGTLRLWDLTTGT 119
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 1e-12
Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 22/126 (17%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
SP+ L SG + D N + ++++ +S + L + +
Sbjct: 224 SPDGSLCASGGK-------DGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCAAT 275
Query: 71 FDKSVAIF------ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVR 122
S+ I+ +D+ + L W D L D VR
Sbjct: 276 -GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS---ADGQTLFAGYTDNLVR 331
Query: 123 IWDART 128
+W
Sbjct: 332 VWQVTI 337
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 2e-23
Identities = 29/210 (13%), Positives = 69/210 (32%), Gaps = 35/210 (16%)
Query: 44 IKEYQAHGSKVHSVAWSC---DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 100
+K + V ++ D ++ A+ D ++ ++ + ++
Sbjct: 242 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV-TTSKCVQKWTLDKQQLGNQ 300
Query: 101 QLCWHATNPDLLSTASGDKTVRIWDARTQK---------SQIM------LASGSFDKSVA 145
Q+ AT + + S D T+ ++ + I L SGS+D +
Sbjct: 301 QVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIM 360
Query: 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT 205
+ + +++ H+ + L + S+ S D T+++ +
Sbjct: 361 EW--------SSSSMHQDHSNLIVSLDN--SKAQEYSSISWDDTLKVNGITKHEF----- 405
Query: 206 KGENINITWAPNGNTIAVGNKEDLVTFIDV 235
G + A N AV +D + +
Sbjct: 406 -GSQPKVASANNDGFTAVLTNDDDLLILQS 434
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 5e-23
Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 34/163 (20%)
Query: 40 THNDIKEYQAHGSKVHSVAWSCDGRRL--ASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 97
N E+Q + ++W +GRRL D + D G+ EV GH+
Sbjct: 105 EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-GNSLGEV--SGHSQ 161
Query: 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNK 157
++ + P T D +V + K
Sbjct: 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----------------------FSAS 198
Query: 158 EVVYRGHTGSVDQLCWHATNPD---LLSTASGDKTVRIWDART 197
+ + V + + +PD + T D+ + +D ++
Sbjct: 199 DRTHHKQGSFVRDVEF---SPDSGEFVITVGSDRKISCFDGKS 238
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 5e-22
Identities = 26/195 (13%), Positives = 57/195 (29%), Gaps = 42/195 (21%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFN--THNDIKEYQAHGSKVHSVAWSCDGR-RLASG 69
E + L + D++ + + N + E H ++++ R +
Sbjct: 125 DFEGRRLCVVGEGR-----DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 179
Query: 70 SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD---LLSTASGDKTVRIWDA 126
D SV + + + V + + +PD + T D+ + +D
Sbjct: 180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF---SPDSGEFVITVGSDRKISCFDG 236
Query: 127 RTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTA 184
++ + + V + + D +T
Sbjct: 237 KSGEFLKYI--------------------------EDDQEPVQGGIFALSWLDSQKFATV 270
Query: 185 SGDKTVRIWDARTQK 199
D T+R+WD T K
Sbjct: 271 GADATIRVWDVTTSK 285
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 3e-20
Identities = 35/208 (16%), Positives = 70/208 (33%), Gaps = 34/208 (16%)
Query: 32 DDYVKHFNTHND--IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE 89
D + + +D +K H + ++ + L SGS+D + + +
Sbjct: 318 DGTLNFYELGHDEVLKTISGHNKGITALTVN----PLISGSYDGRIMEW--------SSS 365
Query: 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--SQI---------MLASG 138
+++ H+ + L + S+ S D T+++ + SQ A
Sbjct: 366 SMHQDHSNLIVSLDN--SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 423
Query: 139 SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDAR 196
+ D + I GD+ K V GS L N L + + ++ D
Sbjct: 424 TNDDDLLILQ-SFTGDIIKSVRL-NSPGSAVSLSQ---NYVAVGLEEGNTIQVFKLSDLE 478
Query: 197 TQKSQIIATKGENINITWAPNGNTIAVG 224
+ + I+ +P+ IA G
Sbjct: 479 VSFDLKTPLRAKPSYISISPSETYIAAG 506
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 8e-19
Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 49/193 (25%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
+ L G+ + K+ D D+K +K ++ S +A+G
Sbjct: 457 NYVAVGLEEGNTIQVF-KLSD----LEVSFDLKT--PLRAKPSYISISPSETYIAAGDVM 509
Query: 73 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH---------ATNPDLLSTASGDKTVRI 123
+ ++ D + K + T ++ + W DL++T S D + I
Sbjct: 510 GKILLY--DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 567
Query: 124 WDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LL 181
+ + I H V+ L W L+
Sbjct: 568 YSVKRPMKII-------------------------KALNAHKDGVNNLLWE---TPSTLV 599
Query: 182 STASGDKTVRIWD 194
S + D ++ W+
Sbjct: 600 S-SGADACIKRWN 611
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 3e-18
Identities = 33/206 (16%), Positives = 63/206 (30%), Gaps = 39/206 (18%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
GS+ + + DG + D + I GD+ K V GS L N
Sbjct: 405 FGSQPKVASANNDGFTAVLTN-DDDLLILQ-SFTGDIIKSVRL-NSPGSAVSLSQ---NY 458
Query: 110 D--LLSTASGDKTVRIWDARTQKSQI-----------------MLASGSFDKSVAIFALD 150
L + + ++ D +A+G + ++ D
Sbjct: 459 VAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY--D 516
Query: 151 KKGDLNKEVVYRGHTGSVDQLCWH---------ATNPDLLSTASGDKTVRIWDARTQKSQ 201
+ K + T ++ + W DL++T S D + I+ +
Sbjct: 517 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI 576
Query: 202 IIATKG--ENIN-ITWAPNGNTIAVG 224
I A + +N + W ++ G
Sbjct: 577 IKALNAHKDGVNNLLWETPSTLVSSG 602
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 2e-15
Identities = 22/184 (11%), Positives = 50/184 (27%), Gaps = 31/184 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGS-VDQLCWH- 105
+ +++ +A KS + LD V + GH S V + +
Sbjct: 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 74
Query: 106 ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165
L + V +W K + + ++ E ++
Sbjct: 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSV----------------EVNVKSE--FQVLA 116
Query: 166 GSVDQLCWHATNPD--LLSTASG--DKTVRIWDARTQKS-QIIATKGENIN-ITWAPNGN 219
G + + W + + L D + S ++ + IN +
Sbjct: 117 GPISDISW---DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP 173
Query: 220 TIAV 223
++
Sbjct: 174 MRSM 177
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 2e-23
Identities = 55/208 (26%), Positives = 80/208 (38%), Gaps = 42/208 (20%)
Query: 50 HGSKVHSVAWS-CDGRRLASGSFDKSVAIFALDKKGDLNKEVVY--RGHTGSVDQLCWHA 106
H V S+A S L S S DK++ + L V +GH+ V
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL-- 73
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQI-------------------MLASGSFDKSVA 145
D +AS DKT+R+WD T ++ M+ SGS DK++
Sbjct: 74 -TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 146 IFALDKKGDLNKEVVYRGHTGSVDQLCW---HATNPD--LLSTASGDKTVRIWDARTQKS 200
++ KG GH V Q+ + D + +A DK V+ W+
Sbjct: 133 VW--TIKGQCLA--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-- 186
Query: 201 QIIAT-KG--ENIN-ITWAPNGNTIAVG 224
QI A G NIN +T +P+G IA
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASA 214
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 1e-22
Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 41/183 (22%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW---HA 106
H S V SV + SGS DK++ ++ KG GH V Q+
Sbjct: 106 HKSDVMSVDIDKKASMIISGSRDKTIKVW--TIKGQCLA--TLLGHNDWVSQVRVVPNEK 161
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
+ D + +A DK V+ W+ + + GH
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADF--------------------------IGH 195
Query: 165 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENIN-ITWAPNGNTI 221
+++ L +PD L+++A D + +W+ +K+ + + + + ++PN +
Sbjct: 196 NSNINTLTA---SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWL 252
Query: 222 AVG 224
A
Sbjct: 253 AAA 255
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 8e-18
Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 37/160 (23%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN--KEVVYRGHTGSVDQ 101
++ H S ++++ S DG +AS D + ++ +L K + V
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW------NLAAKKAMYTLSAQDEVFS 242
Query: 102 LCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEV 159
L + P+ L+ A+ ++++ Q L
Sbjct: 243 LAFS---PNRYWLAAAT-ATGIKVFSLDPQYLVDDLRP------------------EFAG 280
Query: 160 VYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
+ L W D L D +R+W T
Sbjct: 281 YSKAAEPHAVSLAWS---ADGQTLFAGYTDNVIRVWQVMT 317
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 3e-13
Identities = 32/136 (23%), Positives = 48/136 (35%), Gaps = 32/136 (23%)
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKK 152
GH G V L A P+LL +AS DKT+ W + + SF
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF------------ 61
Query: 153 GDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KG-- 207
+GH+ V D +AS DKT+R+WD T ++ G
Sbjct: 62 ---------KGHSHIVQDCTL---TADGAYALSASWDKTLRLWDVATGET--YQRFVGHK 107
Query: 208 ENIN-ITWAPNGNTIA 222
++ + + I
Sbjct: 108 SDVMSVDIDKKASMII 123
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 2e-06
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---QIIAT-KG--ENIN-ITW 214
GH G V L A P+LL +AS DKT+ W + + KG + T
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 215 APNGNTIAVG 224
+G
Sbjct: 74 TADGAYALSA 83
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 4e-23
Identities = 41/242 (16%), Positives = 76/242 (31%), Gaps = 52/242 (21%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN--KEVVYRGHTGSVDQLCWHAT 107
H V V WS DG ++ + S DK+ ++ DL+ + + H V + W
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMW------DLSSNQAIQIAQHDAPVKTIHWI-K 137
Query: 108 NPD--LLSTASGDKTVRIWDARTQKSQI----------------MLASGSFDKSVAIFAL 149
P+ + T S DKT++ WD R+ + M + ++ + ++ L
Sbjct: 138 APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQL 197
Query: 150 DKKGDLNKEVVYRGHTGSVDQLCW---HATNPDLLSTASGDKTVRIW--DARTQKSQIIA 204
+ + + + + P + S + V I +
Sbjct: 198 ENQPSEFRRIE-SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT 256
Query: 205 TKGENIN---------------ITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSR 249
K N I + P T+A + +F D R + TS
Sbjct: 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA----RTKLKTSE 312
Query: 250 GH 251
Sbjct: 313 QL 314
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 4e-23
Identities = 35/234 (14%), Positives = 67/234 (28%), Gaps = 49/234 (20%)
Query: 54 VHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCW--HATNP 109
+ + G + S + D + K++ V S+ L +
Sbjct: 5 GTTSGFGTSGTSMFGSATTDNHNPM----------KDIEVTSSPDDSIGCLSFSPPTLPG 54
Query: 110 DLLSTASGDKTVRIWDARTQKSQIM---------------------LASGSFDKSVAIFA 148
+ L S VR W+ + I + + S DK+ ++
Sbjct: 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW- 113
Query: 149 LDKKGDLN--KEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIA 204
DL+ + + H V + W P+ + T S DKT++ WD R+ ++
Sbjct: 114 -----DLSSNQAIQIAQHDAPVKTIHWI-KAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL 167
Query: 205 TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258
E V E + + R + R +
Sbjct: 168 QLPERC-YCADVIYPMAVVATAERGLIVYQLENQPSEFRRIE--SPLKHQHRCV 218
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 2e-18
Identities = 31/220 (14%), Positives = 65/220 (29%), Gaps = 53/220 (24%)
Query: 48 QAHGSKVHSVAW--SCDGRRLASGSFDKSVAIFALDKKGDLN--KEV-VYRGHTGSVDQL 102
H + V ++ W + + + +GS+DK++ + D + V +
Sbjct: 124 AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW------DTRSSNPMMVLQLPERCY--- 174
Query: 103 CWHATNPDLLSTASGDKTVRIWDART-------------------------QKSQIMLAS 137
+ A+ ++ + ++ Q A
Sbjct: 175 -CADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233
Query: 138 GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW----HATN-----PD--LLSTASG 186
GS + VAI ++ ++ H + +A N P L+T
Sbjct: 234 GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS 293
Query: 187 DKTVRIWDARTQKSQIIATKGEN-IN-ITWAPNGNTIAVG 224
D WD + + + + I+ + NGN A
Sbjct: 294 DGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYA 333
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 1e-13
Identities = 22/169 (13%), Positives = 42/169 (24%), Gaps = 46/169 (27%)
Query: 50 HGSKVHSVAWSCDGR----RLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW- 104
+ VA D + A GS + VAI ++ ++ H +
Sbjct: 211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP 270
Query: 105 ---HATN-----PD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGD 154
+A N P L+T D WD +
Sbjct: 271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL---------------------- 308
Query: 155 LNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQ 201
+ C+ N + + + AS + + + +
Sbjct: 309 ----KTSEQLDQPISACCF---NHNGNIFAYASSYDWSKGHEFYNPQKK 350
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 5e-11
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 10/90 (11%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
V+ +A+ LA+ D + + D + L + C+ N
Sbjct: 272 DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT---SEQLDQPISACCF---NH 325
Query: 110 D--LLSTASGDKTVRIWDART--QKSQIML 135
+ + + AS + + +K+ I L
Sbjct: 326 NGNIFAYASSYDWSKGHEFYNPQKKNYIFL 355
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 9/65 (13%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
P + L + D + +K + + + ++ +G A S
Sbjct: 282 HPVHGTLATVGS-------DGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYAS 334
Query: 71 FDKSV 75
Sbjct: 335 SYDWS 339
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 5e-23
Identities = 43/224 (19%), Positives = 83/224 (37%), Gaps = 44/224 (19%)
Query: 35 VKHFNTHNDIKEYQAHGSKVHSVAWSCD-GRRLASGSFDKSVAIFALDKKGDLNKEVVY- 92
+AH V ++A D + S S DKS+ ++ L K
Sbjct: 366 TNAAAGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRR 425
Query: 93 -RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQ----------------- 132
GH+ V+ + D + S D +R+WD S
Sbjct: 426 LTGHSHFVEDVVLS---SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL 482
Query: 133 --IMLASGSFDKSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD----LLSTA 184
+ S S D+++ ++ + G+ + GH V + + +P+ + +A
Sbjct: 483 DNRQIVSASRDRTIKLW--NTLGECKYTISEGGEGHRDWVSCVRF---SPNTLQPTIVSA 537
Query: 185 SGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIAVG 224
S DKTV++W+ ++ +T G ++ + +P+G+ A G
Sbjct: 538 SWDKTVKVWNLSNC--KLRSTLAGHTGYVSTVAVSPDGSLCASG 579
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 5e-22
Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 43/184 (23%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHAT 107
H V SVA+S D R++ S S D+++ ++ + G+ + GH V + +
Sbjct: 471 HTKDVLSVAFSLDNRQIVSASRDRTIKLW--NTLGECKYTISEGGEGHRDWVSCVRF--- 525
Query: 108 NPD----LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
+P+ + +AS DKTV++W+ K + L G
Sbjct: 526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL--------------------------AG 559
Query: 164 HTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENIN-ITWAPNGNT 220
HTG V + +PD L ++ D V +WD K I+ + ++PN
Sbjct: 560 HTGYVSTVAV---SPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYW 616
Query: 221 IAVG 224
+
Sbjct: 617 LCAA 620
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 1e-17
Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 28/155 (18%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK-EVVY--RGHTGSVDQLCWHA 106
H V +VA S DG ASG D V ++ DL + + +Y ++ + LC+
Sbjct: 560 HTGYVSTVAVSPDGSLCASGGKDGVVLLW------DLAEGKKLYSLEANS-VIHALCFS- 611
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
P+ L A+ + ++IWD + KS + A +K D + +
Sbjct: 612 --PNRYWLCAAT-EHGIKIWDLES-KSIVEDLKVDLK------AEAEKADNSGPAATKRK 661
Query: 165 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
L W + D L + D +R+W
Sbjct: 662 VIYCTSLNW---SADGSTLFSGYTDGVIRVWGIGR 693
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-14
Identities = 27/159 (16%), Positives = 46/159 (28%), Gaps = 29/159 (18%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
I + A V + + R + + A R HT V +
Sbjct: 333 IPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGT---MRAHTDMVTAIA 389
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
N D++ +AS DK++ +W +A G
Sbjct: 390 TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL---------------------TG 428
Query: 164 HTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKS 200
H+ V+ + D + S D +R+WD S
Sbjct: 429 HSHFVEDVVLS---SDGQFALSGSWDGELRLWDLAAGVS 464
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 7e-11
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 32/136 (23%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
SP+ L SG + D V + +A+ +H++ +S + L + +
Sbjct: 570 SPDGSLCASGGK-------DGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNRYWLCAAT 621
Query: 71 FDKSVAIF----------------ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LL 112
+ + I+ A +K D + + L W + D L
Sbjct: 622 -EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW---SADGSTL 677
Query: 113 STASGDKTVRIWDART 128
+ D +R+W
Sbjct: 678 FSGYTDGVIRVWGIGR 693
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 1e-09
Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 23/159 (14%)
Query: 63 GRRLASGSFDKSVAIFALDKKGDLNKEVVYR-GHTGSVDQLCWHATNPDLLSTASGDKTV 121
+ + S +K +A + L E + + + + +L
Sbjct: 263 SAGINAASPNKELAK-EFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAK--DPRIAA 319
Query: 122 RIWDART----QKSQIMLASGSFDKSVAIFALDKKGD---------------LNKEVVYR 162
+ +A+ M A ++ I A + L + R
Sbjct: 320 TMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMR 379
Query: 163 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 201
HT V + N D++ +AS DK++ +W
Sbjct: 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA 418
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 6e-23
Identities = 22/180 (12%), Positives = 50/180 (27%), Gaps = 30/180 (16%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
++V +AWS DG + +G + + + +K G L V H + + W N
Sbjct: 107 TTNQVTCLAWSHDGNSIVTGVENGELRL--WNKTGALLN--VLNFHRAPIVSVKW---NK 159
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
D + + + +W+ + + G + G
Sbjct: 160 DGTHIISMDVENVTILWNVISGTVMQHFE-----------LKETGGSSINAENHSGDGSL 208
Query: 168 VDQLCWHATNPDL-LSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIA 222
+ W D + ++ + G I+ + + +
Sbjct: 209 GVDVEWV---DDDKFVIPGPKGAIFVYQITEKTP--TGKLIGHHGPISVLEFNDTNKLLL 263
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 2e-21
Identities = 29/221 (13%), Positives = 60/221 (27%), Gaps = 53/221 (23%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
+ K + G + + H + + ++ + L S S
Sbjct: 215 VDDDKFVIPGP--------KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 128
D ++ I+ G+ + GH+ S+ W D ++S S D +VR+W +
Sbjct: 267 DDGTLRIWHG-GNGNSQN--CFYGHSQSIVSASWV---GDDKVIS-CSMDGSVRLWSLKQ 319
Query: 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASG 186
+ + D + A
Sbjct: 320 NTLLALS--------------------------IVDGVPIFAGRIS---QDGQKYAVAFM 350
Query: 187 DKTVRIWDARTQKSQIIATKG---ENINITWAPNGNTIAVG 224
D V ++D + S+ + G +N P +
Sbjct: 351 DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS 391
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 4e-17
Identities = 19/179 (10%), Positives = 45/179 (25%), Gaps = 28/179 (15%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
G+ D S D + K + ++ W+ +
Sbjct: 9 DGASTVERETQEDDTNSIDSSDDLDGFV----------KILKEIVKLDNIVSSTWNPLDE 58
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
+L+ + R+ + + T V
Sbjct: 59 SILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS------GKTTNQVT 112
Query: 170 QLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT----KGENINITWAPNGNTIA 222
L W + D + T + +R+W+ ++ + +++ W +G I
Sbjct: 113 CLAW---SHDGNSIVTGVENGELRLWNK---TGALLNVLNFHRAPIVSVKWNKDGTHII 165
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 8e-16
Identities = 36/198 (18%), Positives = 63/198 (31%), Gaps = 53/198 (26%)
Query: 44 IKEYQAHGSKVHSVAWSCDGR-----------RLASGSFDKSVAIFALDKKGDLNKEVVY 92
+ + GS +++ S DG + ++ ++ + +
Sbjct: 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQI-TEKTPTG--KL 243
Query: 93 RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALD 150
GH G + L + N LL +AS D T+RIW S F
Sbjct: 244 IGHHGPISVLEF---NDTNKLLLSASDDGTLRIWHGGN------------GNSQNCF--- 285
Query: 151 KKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGE 208
GH+ S+ W D ++S S D +VR+W + ++
Sbjct: 286 -----------YGHSQSIVSASWV---GDDKVIS-CSMDGSVRLWSLKQNTLLALSIVDG 330
Query: 209 N-IN-ITWAPNGNTIAVG 224
I + +G AV
Sbjct: 331 VPIFAGRISQDGQKYAVA 348
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 8e-14
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 3/88 (3%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ G + + S DG++ A D V ++ L K ++ G+ +
Sbjct: 323 LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR--SLYGNRDGILNPL 380
Query: 104 WHATNPDLLSTASGDKTVRI-WDARTQK 130
S+ D + W+ K
Sbjct: 381 PIPLYASYQSSQDNDYIFDLSWNCAGNK 408
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 6e-23
Identities = 43/222 (19%), Positives = 86/222 (38%), Gaps = 54/222 (24%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
P + ++ S S+ D +K + T + + + H V +++ G+ LAS S
Sbjct: 117 HPVFSVMVSASE-------DATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 128
D ++ ++ + + + GH +V + P+ + +AS DKT+++W+ +T
Sbjct: 170 ADMTIKLWDF-QGFECIR--TMHGHDHNVSSVSI---MPNGDHIVSASRDKTIKMWEVQT 223
Query: 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASG 186
GH V + N D L+++ S
Sbjct: 224 GYCVKTF--------------------------TGHREWVRMVRP---NQDGTLIASCSN 254
Query: 187 DKTVRIWDARTQKSQIIAT----KGENINITWAPNGNTIAVG 224
D+TVR+W T+ + A + I+WAP + ++
Sbjct: 255 DQTVRVWVVATK--ECKAELREHRHVVECISWAPESSYSSIS 294
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 5e-22
Identities = 37/187 (19%), Positives = 74/187 (39%), Gaps = 21/187 (11%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+K + H V V + DG +AS S D++V ++ + + E R H V+ +
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV-ATKECKAE--LREHRHVVECIS 283
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
W P+ ++ + T + L SGS DK++ ++ + G G
Sbjct: 284 WA---PESSYSSISEATGSETKKSGKPGPF-LLSGSRDKTIKMWDV-STGMCLM--TLVG 336
Query: 164 HTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPN 217
H V + +H + + + DKT+R+WD + + + + T + + +
Sbjct: 337 HDNWVRGVLFH---SGGKFILSCADDKTLRVWDYKNK--RCMKTLNAHEHFVTSLDFHKT 391
Query: 218 GNTIAVG 224
+ G
Sbjct: 392 APYVVTG 398
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 8e-22
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 45/181 (24%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H S V V + + S S D ++ ++ + GD E +GHT SV + + +
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-TGDF--ERTLKGHTDSVQDISF---DH 160
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
LL++ S D T+++WD + + + GH +
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTM--------------------------HGHDHN 194
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTI 221
V + P+ + +AS DKT+++W+ +T + T G E + + +G I
Sbjct: 195 VSSVSI---MPNGDHIVSASRDKTIKMWEVQTGYC--VKTFTGHREWVRMVRPNQDGTLI 249
Query: 222 A 222
A
Sbjct: 250 A 250
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 9e-22
Identities = 46/221 (20%), Positives = 80/221 (36%), Gaps = 36/221 (16%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
KLL S S D +K F I+ H V SV+ +G + S S
Sbjct: 159 DHSGKLLASCSA-------DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 211
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 128
DK++ ++ + + G K + GH V + N D L+++ S D+TVR+W T
Sbjct: 212 RDKTIKMWEV-QTGYCVK--TFTGHREWVRMVRP---NQDGTLIASCSNDQTVRVWVVAT 265
Query: 129 QKSQIMLAS-GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTAS 185
++ + L + ++ +A + + L + S
Sbjct: 266 KECKAELREHRHVVECIS-WAPESS---------YSSISEATGSETKKSGKPGPFLLSGS 315
Query: 186 GDKTVRIWDARTQKSQIIAT----KGENINITWAPNGNTIA 222
DKT+++WD T + T + + G I
Sbjct: 316 RDKTIKMWDVST--GMCLMTLVGHDNWVRGVLFHSGGKFIL 354
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 38/119 (31%)
Query: 112 LSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 171
+ + W R + + GH V ++
Sbjct: 82 GGPLGQKRDPKEWIPRPPEKYAL---------------------------SGHRSPVTRV 114
Query: 172 CWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIAVG 224
+H P ++ +AS D T+++WD T T KG +++ I++ +G +A
Sbjct: 115 IFH---PVFSVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFDHSGKLLASC 168
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 9e-06
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSV 75
AH V S+ + + +GS D++V
Sbjct: 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTV 404
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 1e-22
Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 23/187 (12%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ + H V ++ ++ G L SGS D++V ++ + KKG V+ GH +V L
Sbjct: 155 LLQLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDI-KKGCCTH--VFEGHNSTVRCLD 210
Query: 104 WHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
+ + T S D T+ +W + S V ++ V
Sbjct: 211 I-VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF-HTPEENPYFVG--VL 266
Query: 162 RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWA 215
RGH SV + ++ + S D T+ +WD K + G + I +
Sbjct: 267 RGHMASV-----RTVSGHGNIVVSGSYDNTLIVWDVAQMKC--LYILSGHTDRIYSTIYD 319
Query: 216 PNGNTIA 222
Sbjct: 320 HERKRCI 326
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 6e-20
Identities = 36/191 (18%), Positives = 72/191 (37%), Gaps = 44/191 (23%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY--RGHTGSVDQLCWHAT 107
H +++S + + +R S S D ++ I+ L+ N E++Y +GHT V L
Sbjct: 309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLE-----NGELMYTLQGHTALVGLLRL--- 360
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+ L +A+ D ++R WDA + HT
Sbjct: 361 SDKFLVSAAADGSIRGWDANDYSRKFSY---------------------------HHTNL 393
Query: 168 VDQLCWHATNPDLLSTASG-DKTVRIWDARTQKSQIIATKGENINITW--APNGNTIAVG 224
++ SG + I++ R+ K + A ++ + W G T+
Sbjct: 394 SAITTFY---VSDNILVSGSENQFNIYNLRSGK-LVHANILKDADQIWSVNFKGKTLVAA 449
Query: 225 NKEDLVTFIDV 235
++D +F+++
Sbjct: 450 VEKDGQSFLEI 460
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 2e-19
Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 40/176 (22%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H + V +V S G + SGS+D ++ ++ + + + GHT + + +
Sbjct: 269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDV-AQMKCLY--ILSGHTDRIYSTIY---DH 320
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+ +AS D T+RIWD + L +GHT
Sbjct: 321 ERKRCISASMDTTIRIWDLENGELMYTL--------------------------QGHTAL 354
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINIT-WAPNGNTIA 222
V L + L +A+ D ++R WDA + IT + + N +
Sbjct: 355 VGLLRL---SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 407
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 9e-18
Identities = 35/194 (18%), Positives = 61/194 (31%), Gaps = 44/194 (22%)
Query: 37 HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96
+F + S+ + D RL+ + + K RGH
Sbjct: 64 NFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRT--TLRGHM 121
Query: 97 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGD 154
SV + + T + DK +R++D+ +K + L
Sbjct: 122 TSV----ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQL------------------- 158
Query: 155 LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT-KG-----E 208
GH G V L + + +L + S D+TVR+WD + +G
Sbjct: 159 -------SGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKK--GCCTHVFEGHNSTVR 207
Query: 209 NINITWAPNGNTIA 222
++I N I
Sbjct: 208 CLDIVEYKNIKYIV 221
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 6e-16
Identities = 30/174 (17%), Positives = 53/174 (30%), Gaps = 60/174 (34%)
Query: 50 HGSKVH--SVAWSCDGRRLASGSFDKSVAI--------------------FALDKKGDLN 87
H S V + + + + +GS D ++ + + +
Sbjct: 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261
Query: 88 KEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVA 145
V RGH SV + ++ + S D T+ +WD K +L
Sbjct: 262 FVGVLRGHMASV-----RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL---------- 306
Query: 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
GHT + + + + +AS D T+RIWD
Sbjct: 307 ----------------SGHTDRIYSTIY---DHERKRCISASMDTTIRIWDLEN 341
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-07
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 9/80 (11%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H + + L SGS + I+ L + G L + + + +
Sbjct: 390 HTNLSAITTFYVSDNILVSGS-ENQFNIYNL-RSGKLVHANI-LKDADQIWSVNF---KG 443
Query: 110 DLLSTASGD---KTVRIWDA 126
L A + I D
Sbjct: 444 KTLVAAVEKDGQSFLEILDF 463
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 2e-22
Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 18/154 (11%)
Query: 50 HGSKVHSVAWSCDG---RRLASGSFDKSVAIFALDKKGDLNKE--VVYRGHTGSVDQLCW 104
+ V S+ + +L + S + +F + + V + H +V Q+
Sbjct: 208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH 267
Query: 105 HATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
N +L TA G + +W + S + VA L + V
Sbjct: 268 LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVA-----GSVSLLQNV--TLS 320
Query: 165 TGSVDQLCWHATNPD---LLSTASGDKTVRIWDA 195
T + L W PD L +S D+TVR+
Sbjct: 321 TQPISSLDWS---PDKRGLCVCSSFDQTVRVLIV 351
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 1e-21
Identities = 34/217 (15%), Positives = 69/217 (31%), Gaps = 48/217 (22%)
Query: 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY--RGHTG---SVDQLCWHATN 108
A S R LA+G F ++ I+ L+ + VY +GH ++D +
Sbjct: 71 GTFGATSLQQRYLATGDFGGNLHIWNLEA----PEMPVYSVKGHKEIINAIDGIGGLGIG 126
Query: 109 PD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
+ T S D TV++WD R + + +G
Sbjct: 127 EGAPEIVTGSRDGTVKVWDPRQKDDPVANME----------------------PVQGENK 164
Query: 167 SVDQLCW-----HATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENIN-ITWAPNG 218
CW +A N + ++ + ++++D R + + + +
Sbjct: 165 RD---CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD 221
Query: 219 ---NTIAVGNKEDLVTFIDVVKSLPPRERTL-TSRGH 251
N + + E D+ P + + + H
Sbjct: 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH 258
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 2e-21
Identities = 29/195 (14%), Positives = 58/195 (29%), Gaps = 48/195 (24%)
Query: 52 SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA--TNP 109
+ A++ + R + +G + + +F D + V L + +
Sbjct: 169 TVAFGNAYNQEERVVCAGYDNGDIKLF--DLRN--MALRWETNIKNGVCSLEFDRKDISM 224
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
+ L S + ++D RTQ AS S + H +V
Sbjct: 225 NKLVATSLEGKFHVFDMRTQHPTKGFASVSE---------------------KAHKSTVW 263
Query: 170 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQI----------IATKGENIN-------- 211
Q+ N +L TA G + +W + +A +
Sbjct: 264 QVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP 323
Query: 212 ---ITWAPNGNTIAV 223
+ W+P+ + V
Sbjct: 324 ISSLDWSPDKRGLCV 338
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 6e-21
Identities = 28/199 (14%), Positives = 56/199 (28%), Gaps = 49/199 (24%)
Query: 48 QAHGSKVHSVAWSCDGRRLAS----GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ V W + + + ++ + GDL K + +
Sbjct: 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ-HGDL-KLLREIEKAKPIKCGT 72
Query: 104 WHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
+ AT+ L+T + IW+ + +
Sbjct: 73 FGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY-------------------------SV 107
Query: 162 RGHTG---SVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK---SQIIATKGENINIT 213
+GH ++D + + T S D TV++WD R + + + +GEN
Sbjct: 108 KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167
Query: 214 WA--------PNGNTIAVG 224
W + G
Sbjct: 168 WTVAFGNAYNQEERVVCAG 186
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 9/77 (11%), Positives = 26/77 (33%), Gaps = 15/77 (19%)
Query: 160 VYRGHTGSVDQLCWHATNPD------LLSTASGDKTVRIWDARTQKSQIIATKGENINIT 213
+ +G +V W P + + A G +++++ + +++ + I
Sbjct: 13 IQKGFNYTVFDCKW---VPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIK 69
Query: 214 ------WAPNGNTIAVG 224
+ +A G
Sbjct: 70 CGTFGATSLQQRYLATG 86
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 3e-22
Identities = 33/213 (15%), Positives = 71/213 (33%), Gaps = 40/213 (18%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDK---KGDLNKEVVYRGHTGSVD 100
++ SV S G +A+G + +V I L + + ++ S+
Sbjct: 179 VESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 237
Query: 101 QLCWHATNPD--LLSTASGDKT---VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDL 155
+ + P LL+ A + + +++ + L+ + ++
Sbjct: 238 SVKFS---PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL--------- 285
Query: 156 NKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-------- 205
H+ V L + N L +A D +R WD +T + I T
Sbjct: 286 ----GEFAHSSWVMSLSF---NDSGETLCSAGWDGKLRFWDVKT--KERITTLNMHCDDI 336
Query: 206 KGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238
+ E + +G+++A D+ +S
Sbjct: 337 EIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS 369
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 1e-17
Identities = 23/206 (11%), Positives = 60/206 (29%), Gaps = 35/206 (16%)
Query: 35 VKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG 94
+ H + I+ V + ++S D D++ + +K DL + +
Sbjct: 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVI--FEKLDLLDSDM-KK 121
Query: 95 HTGSVDQLCWHATNPDL-------LSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIF 147
H+ L T IW + + ++ ++ +
Sbjct: 122 HSFWA-----LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ 176
Query: 148 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD-LLSTASGDKTVRIWDARTQKSQIIATK 206
+ + + L++T + TV+I + T +
Sbjct: 177 GTVES--------PMTPSQFATSVDIS---ERGLIATGFNNGTVQISELSTLRPLYNFES 225
Query: 207 GENIN--------ITWAPNGNTIAVG 224
++ + ++P G+ +A+
Sbjct: 226 QHSMINNSNSIRSVKFSPQGSLLAIA 251
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 2e-16
Identities = 31/179 (17%), Positives = 53/179 (29%), Gaps = 42/179 (23%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFAL-------------DKKGDLNKEVVYRGHT 96
+ + + SV +S G LA S L + H+
Sbjct: 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 291
Query: 97 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKS-----------QIMLASGSFD-- 141
V L + N L +A D +R WD +T++ +I + D
Sbjct: 292 SWVMSLSF---NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 348
Query: 142 -KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 199
S+A + L K R G+ + L D+++R + K
Sbjct: 349 GDSLAEPGVFDVKFLKKGW--RSGMGADLN--------ESLCCVCLDRSIRWFREAGGK 397
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 2e-14
Identities = 23/183 (12%), Positives = 53/183 (28%), Gaps = 26/183 (14%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL-CWHA 106
+AH + + SV+ S S D + ++ D K N+ + ++ V + H
Sbjct: 13 KAHDADIFSVSACNSF--TVSCSGDGYLKVW--DNKLLDNENPKDKSYSHFVHKSGLHHV 68
Query: 107 TNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
+ + + + + + D++ + +K DL + + H+
Sbjct: 69 DVLQAIERDAFELCLVATTSFSGDLLF-YRITREDETKKVI--FEKLDLLDSDM-KKHSF 124
Query: 167 SVDQLCWHATNPDL-------LSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGN 219
L T IW + ++ + W+P
Sbjct: 125 WA-----LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE-----SNSLTLNWSPTLE 174
Query: 220 TIA 222
Sbjct: 175 LQG 177
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-12
Identities = 13/145 (8%), Positives = 38/145 (26%), Gaps = 22/145 (15%)
Query: 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASG--SFDKSVAIFA 148
+ H + + + SGD +++WD + ++ F +
Sbjct: 11 AGKAHDADIFSVSA---CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 67
Query: 149 LDKKGDLNKEVVYRGHTGSVDQ--LCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIA 204
+D + + + + + + D D+T ++ +
Sbjct: 68 VDVLQAI--------ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM 119
Query: 205 TKGENINITWAP-----NGNTIAVG 224
K + W + +
Sbjct: 120 KKHSFWALKWGASNDRLLSHRLVAT 144
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 3e-12
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 10/120 (8%)
Query: 36 KHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH 95
++ AH S V S++++ G L S +D + + + K + H
Sbjct: 276 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT---LNMH 332
Query: 96 TGSVDQLCWH-ATNPD---LLSTASGDKT--VRIWDART-QKSQIMLASGSFDKSVAIFA 148
++ A + L D + W + L D+S+ F
Sbjct: 333 CDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 4e-22
Identities = 18/188 (9%), Positives = 57/188 (30%), Gaps = 32/188 (17%)
Query: 38 FNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 97
D + ++ SK +++ + G+ + +G + + + K + + T
Sbjct: 234 LFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ--LPSKFTC 291
Query: 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNK 157
S + L N + + + + WD R+ + +
Sbjct: 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG----------------------- 328
Query: 158 EVVYRGHTGSVDQLCWHATNPD-LLSTASGDKTVRIWDARTQKSQIIATKGENIN--ITW 214
++ + + L ++ D ++++ +S+ A + E ++
Sbjct: 329 -EFLINEGTPINNVYFA---AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSN 384
Query: 215 APNGNTIA 222
+
Sbjct: 385 DDAVSQFC 392
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 1e-21
Identities = 28/190 (14%), Positives = 53/190 (27%), Gaps = 47/190 (24%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHN-DIKEYQAHGSKVHSVAWSCDGRRLASGSF 71
L D + FNT D + RR G+
Sbjct: 65 EKVGSHLYKARL-------DGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTT 117
Query: 72 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 129
+ + + + + + H + +L + P L ++S D ++IW +
Sbjct: 118 EGDIKVLDS-NFNLQRE--IDQAHVSEITKLKF---FPSGEALISSSQDMQLKIWSVKDG 171
Query: 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGD 187
+ L GH +V + + +AS D
Sbjct: 172 SNPRTL--------------------------IGHRATVTDIAI---IDRGRNVLSASLD 202
Query: 188 KTVRIWDART 197
T+R+W+ T
Sbjct: 203 GTIRLWECGT 212
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 3e-20
Identities = 13/154 (8%), Positives = 33/154 (21%), Gaps = 40/154 (25%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
+ G L D +F +
Sbjct: 55 GVDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIR----DGSKMLKRADYTAVDTA---KL 107
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+ + +++ D+ + + + H
Sbjct: 108 QMRRFILGTTEGDIKVLDSNFNLQREID--------------------------QAHVSE 141
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 199
+ +L + P L ++S D ++IW +
Sbjct: 142 ITKLKF---FPSGEALISSSQDMQLKIWSVKDGS 172
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 5e-20
Identities = 21/165 (12%), Positives = 50/165 (30%), Gaps = 11/165 (6%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ H + V +A GR + S S D ++ ++ ++ V+ +
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 233
Query: 104 WHATNPDLLSTASGDKTVRIW---DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVV 160
L S K + + + +G + + + K + +
Sbjct: 234 LFVGTDRQLHEISTSKKNNLEFGTYGKY------VIAGHVSGVITVHNVFSKEQTIQ--L 285
Query: 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT 205
T S + L N + + + + WD R+ + +
Sbjct: 286 PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF 330
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 4e-18
Identities = 12/152 (7%), Positives = 45/152 (29%), Gaps = 27/152 (17%)
Query: 50 HGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108
+S+ + + +G + +A + L + + ++ + +
Sbjct: 289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDL-RSPECPVGEFLINEGTPINNVYFA--- 344
Query: 109 PD-LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
L ++ D ++++ +S+ + + +
Sbjct: 345 AGALFVSSGFDTSIKLDIISDPESERPAI-----------------EFETPTFLVSNDDA 387
Query: 168 VDQLCW---HATNPDLLSTASGDKTVRIWDAR 196
V Q C+ +N ++L + +++
Sbjct: 388 VSQFCYVSDDESNGEVLEVGKNN-FCALYNLS 418
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-17
Identities = 18/184 (9%), Positives = 45/184 (24%), Gaps = 43/184 (23%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKE--VVYRGHTGSVDQLCWHA 106
+ D + + + + + +DK + KE +V G++ VD +
Sbjct: 4 MTKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNT 63
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
L A D +++ + ML
Sbjct: 64 FEKVGSHLYKARLDGHDFLFNTIIRDGSKML---------------------------KR 96
Query: 165 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNG 218
+ + +++ D+ + I + + P+G
Sbjct: 97 ADYTAVDTA---KLQMRRFILGTTEGDIKVLDSNFN--LQREIDQAHVSEITKLKFFPSG 151
Query: 219 NTIA 222
+
Sbjct: 152 EALI 155
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 4e-22
Identities = 25/238 (10%), Positives = 64/238 (26%), Gaps = 41/238 (17%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALD----------KKGDLNKEVVYRGHTGSV 99
S V + + A S D + + ++ + +++ + +
Sbjct: 110 CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNE 169
Query: 100 DQLCWHATNPD---LLSTASGDKTVRIWDARTQK---------------------SQIML 135
+ A + LL + V I+D RT + +L
Sbjct: 170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVL 229
Query: 136 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD---LLSTASGDKTVRI 192
G+ + I+ D + ++ G + + ++ S + I
Sbjct: 230 ILGTTRGIIDIW--DIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287
Query: 193 WDART-QKSQIIATKGENIN-ITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTS 248
W+ E + + P + N + + + ++ L +
Sbjct: 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLT 345
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 2e-17
Identities = 22/207 (10%), Positives = 50/207 (24%), Gaps = 16/207 (7%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108
V S+ + L G+ + I+ D + ++ G + +
Sbjct: 212 PRHGAVSSICIDEECCVLILGTTRGIIDIW--DIRFNVLIRSWSFGDHAPITHVEVCQFY 269
Query: 109 PD---LLSTASGDKTVRIWDART-QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
++ S + IW+ + S F +KG
Sbjct: 270 GKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH-FLPIEKGLEELNFCGIRS 328
Query: 165 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVG 224
++ + +L T ++ ++ S + + P T
Sbjct: 329 LNALSTISVSNDK--ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTAN-- 384
Query: 225 NKEDLVTFIDVVKSLPPRERTLTSRGH 251
+T + S H
Sbjct: 385 -----LTMLLRKMKRTSTHSVDDSLYH 406
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 2e-13
Identities = 26/215 (12%), Positives = 57/215 (26%), Gaps = 46/215 (21%)
Query: 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY---RGHTGSVDQLCWHATNPD 110
+ + R F I G+L +++ S+
Sbjct: 20 LSTFKILPPLRDYKE--FGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETP 77
Query: 111 LLSTASGDKTVRIWDARTQKSQI------------------------MLASGSFDKSVAI 146
L T S ++IW+ + A S D + +
Sbjct: 78 YLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIV 137
Query: 147 FALD----------KKGDLNKEVVYRGHTGSVDQLCWHATNPD---LLSTASGDKTVRIW 193
++ + +++ + + + A + LL + V I+
Sbjct: 138 LKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIF 197
Query: 194 DARTQK-SQIIATKGENINIT---WAPNGNTIAVG 224
D RT + QII + ++ + +G
Sbjct: 198 DIRTLERLQIIENSPRHGAVSSICIDEECCVLILG 232
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 4e-10
Identities = 14/202 (6%), Positives = 45/202 (22%), Gaps = 42/202 (20%)
Query: 6 IQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFN--THNDIKEYQAHGSKVHSVAWSCDG 63
++ ++ GS ++ +N + + + +
Sbjct: 263 VEVCQFYGKNSVIVVGGSS-------KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIE 315
Query: 64 RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123
+ L +F + + + +L T ++ +
Sbjct: 316 KGLEELNFCG-------IRSLNALSTISVSNDK--------------ILLTDEATSSIVM 354
Query: 124 WDARTQKSQIMLASGSFDK-SVAIFALDKKGDLNKEVV----------YRGHTGSVDQLC 172
+ S + S S + + + H ++ +
Sbjct: 355 FSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSIS 414
Query: 173 WHATNP-DLLSTASGDKTVRIW 193
+ LL + I+
Sbjct: 415 TCEVDETPLLVACDNSGLIGIF 436
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 5e-22
Identities = 25/215 (11%), Positives = 64/215 (29%), Gaps = 49/215 (22%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H + V ++ +G L S S D S +++ G+ GHTG++ + +
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSL-NGERLG--TLDGHTGTIWSIDV---DC 84
Query: 110 D--LLSTASGDKTVRIWDARTQKSQI------------------MLASGS-----FDKSV 144
T S D ++++WD + + S+
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSI 144
Query: 145 AIFALDK----------KGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRI 192
I+ +++ + +++ + W + + D +
Sbjct: 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW---STKGKYIIAGHKDGKISK 201
Query: 193 WDARTQKSQIIATKGENINIT---WAPNGNTIAVG 224
+D + + +I+ ++P+
Sbjct: 202 YDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS 236
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 3e-20
Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 27/179 (15%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
WS G+ + +G D ++ + + + + H S+ + + +P
Sbjct: 174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI--DLHEKSISDMQF---SP 228
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
D T+S D + D T + + + K+ G
Sbjct: 229 DLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAV-ITPLKE---------FIILGG 278
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIA 222
A + S G R + + + I +G +N + +P G + A
Sbjct: 279 GQ----EAKDVTTTSANEGKFEARFYHKIFE--EEIGRVQGHFGPLNTVAISPQGTSYA 331
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 2e-18
Identities = 17/169 (10%), Positives = 42/169 (24%), Gaps = 48/169 (28%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ H + + +S D + S D + + + + K+ Y ++
Sbjct: 211 VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV-STLQVLKK--YETDC-PLNTAV 266
Query: 104 WH-------------ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALD 150
A + S G R + ++ +
Sbjct: 267 ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV--------------- 311
Query: 151 KKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
+GH G ++ + P ++ D +R+
Sbjct: 312 -----------QGHFGPLNTVAIS---PQGTSYASGGEDGFIRLHHFEK 346
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 4e-12
Identities = 14/138 (10%), Positives = 39/138 (28%), Gaps = 26/138 (18%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHN--DIKEYQAHGSKVHSVAWSCDGRRLASGS 70
SP+ + S+ D + +K+Y+ +++ + + G
Sbjct: 227 SPDLTYFITSSR-------DTNSFLVDVSTLQVLKKYETDCP-LNTAVITPLKEFIILGG 278
Query: 71 FDKSVAIFALDKKGDLN----------KEV-VYRGHTGSVDQLCWHATNPD--LLSTASG 117
++ + +E+ +GH G ++ + P ++
Sbjct: 279 GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS---PQGTSYASGGE 335
Query: 118 DKTVRIWDARTQKSQIML 135
D +R+
Sbjct: 336 DGFIRLHHFEKSYFDFKY 353
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-08
Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 37/117 (31%)
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173
++ + I L GH + Q+ +
Sbjct: 7 HHHHSSGENLYFQGSHMKAIKL--------------------------TGHERPLTQVKY 40
Query: 174 HATNPD--LLSTASGDKTVRIWDARTQKSQIIAT----KGENINITWAPNGNTIAVG 224
N + LL + S D + +W + + + T G +I G
Sbjct: 41 ---NKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHTGTIWSIDVDCFTKYCVTG 92
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 8e-22
Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 33/155 (21%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN--KEVVY-RGHTGSVDQLCWHA 106
H S V+ ++ S +G+ +A+G DK + I+ D+ +++Q+ ++
Sbjct: 212 HESNVNHLSISPNGKYIATGGKDKKLLIW------DILNLTYPQREFDAGSTINQIAFN- 264
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
P ++ + D+ V+I++ TQ + + + A +G
Sbjct: 265 --PKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKA-------------EGQKGK 308
Query: 165 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
L W+ L D +R + T
Sbjct: 309 NPQCTSLAWN---ALGKKLFAGFTDGVIRTFSFET 340
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 6e-21
Identities = 33/190 (17%), Positives = 61/190 (32%), Gaps = 48/190 (25%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV-YRGHTGSV--------- 99
H S+V+SVA+S D R++ S ++ + ++ + G+ H+ V
Sbjct: 117 HQSEVYSVAFSPDNRQILSAGAEREIKLW--NILGECKFSSAEKENHSDWVSCVRYSPIM 174
Query: 100 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEV 159
++ D +++W+ Q
Sbjct: 175 KSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTF------------------------- 209
Query: 160 VYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKG--ENIN-ITW 214
+ H +V+ L P+ ++T DK + IWD IN I +
Sbjct: 210 --KAHESNVNHLSIS---PNGKYIATGGKDKKLLIWDILNLT-YPQREFDAGSTINQIAF 263
Query: 215 APNGNTIAVG 224
P +AVG
Sbjct: 264 NPKLQWVAVG 273
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 7e-20
Identities = 40/234 (17%), Positives = 80/234 (34%), Gaps = 44/234 (18%)
Query: 5 VIQFHTPKSPEYKLLPSGSQFHLVC--KIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD 62
V F ++ + +L SGS+ V K+ + ++ K H V +A S +
Sbjct: 28 VAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE 87
Query: 63 GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKT 120
S S+DK++ ++ L + G K + GH V + + PD + +A ++
Sbjct: 88 NCFAISSSWDKTLRLWDL-RTGTTYK--RFVGHQSEVYSVAFS---PDNRQILSAGAERE 141
Query: 121 VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV---------DQL 171
+++W+ + H+ V
Sbjct: 142 IKLWNILGECKFSSA------------------------EKENHSDWVSCVRYSPIMKSA 177
Query: 172 CWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN-ITWAPNGNTIAVG 224
++ D +++W+ Q N+N ++ +PNG IA G
Sbjct: 178 NKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATG 231
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 8e-12
Identities = 28/114 (24%), Positives = 41/114 (35%), Gaps = 29/114 (25%)
Query: 93 RGHTGSVDQLCW---HATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIF 147
GH+ V + N D +L + S DKTV IW ++ +G F
Sbjct: 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQ-----NGYFGIPHKAL 72
Query: 148 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 199
GH V L + + ++S DKT+R+WD RT
Sbjct: 73 --------------TGHNHFVSDLAL---SQENCFAISSSWDKTLRLWDLRTGT 109
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 31 IDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSV 75
+ + + S+AW+ G++L +G D +
Sbjct: 289 APVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVI 333
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 1e-21
Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 36/159 (22%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 98
K + H V + G R+ SGS D ++ +++ G + GHTG
Sbjct: 106 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSA-VTGKCLR--TLVGHTGG 161
Query: 99 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKE 158
V +++ + S D+T+++W+A T + L
Sbjct: 162 VWSSQM---RDNIIISGSTDRTLKVWNAETGECIHTL----------------------- 195
Query: 159 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
GHT +V + H + + S D T+R+WD T
Sbjct: 196 ---YGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIET 228
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 7e-20
Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 41/188 (21%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ Q H ++V+S+ + DG + SGS D S+ ++ + + G+ GH +
Sbjct: 272 LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV-ETGNCIH--TLTGHQSLTSGME 326
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
++L + + D TV+IWD +T + L
Sbjct: 327 L---KDNILVSGNADSTVKIWDIKTGQCLQTLQG-----------------------PNK 360
Query: 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDART----QKSQIIATKG--ENIN-ITWAP 216
H +V L + N + + T+S D TV++WD +T + + + G + I +
Sbjct: 361 HQSAVTCLQF---NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 417
Query: 217 NGNTIAVG 224
AVG
Sbjct: 418 TKLVCAVG 425
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 4e-15
Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 35/158 (22%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
I H S + + L SG+ D +V I+ + L H +V L
Sbjct: 312 IHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ 369
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
+ N + + T+S D TV++WD +T + L + G
Sbjct: 370 F---NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES---------------------GG 405
Query: 164 HTGSVDQLCWHATNPD--LLSTASGDKT----VRIWDA 195
G V ++ + + + S + T + + D
Sbjct: 406 SGGVVWRIRA---SNTKLVCAVGSRNGTEETKLLVLDF 440
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 5e-05
Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 33/107 (30%)
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKK 152
V + +P + + W KS +L
Sbjct: 73 HIKRRKVIK-PGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVL----------------- 114
Query: 153 GDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
+GH V + + S D T+++W A T
Sbjct: 115 ---------KGHDDHV----ITCLQFCGNRIVSGSDDNTLKVWSAVT 148
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 86.1 bits (212), Expect = 3e-19
Identities = 32/255 (12%), Positives = 73/255 (28%), Gaps = 57/255 (22%)
Query: 43 DIKEYQAHG--SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR-GHTGSV 99
+ E +G SK + A+ LA + V I+ G EVV + ++
Sbjct: 7 SLAETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIY-----GQQQVEVVIKLEDRSAI 61
Query: 100 DQLCWHATNPDLLSTASGDKTVRIWDARTQK------------------SQIMLASGSFD 141
++ + L + TV + +QK S + G +
Sbjct: 62 KEMRFVKGIY--LVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQN 119
Query: 142 KSVAIFALDKKGDLNKEV--------VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
S+ ++ +D+ + ++ + + W+ + + S + +
Sbjct: 120 GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL-ISYEYVTLTY 178
Query: 194 DARTQK--------------------SQIIATKGENINITWAPNGNTIAVGNKEDLVTFI 233
+ + I + PN I ++++ + F
Sbjct: 179 SLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238
Query: 234 DVVKSLPPRERTLTS 248
D RT+
Sbjct: 239 DANSGHMIMARTVFE 253
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 3e-06
Identities = 26/192 (13%), Positives = 53/192 (27%), Gaps = 22/192 (11%)
Query: 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 113
+++W + + + ++ +G + Q
Sbjct: 394 PQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLL-KGGVRTKRQKLPA-EYGTAFI 451
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173
T + +VRI+DA Q A F ++ LN + +VD++ +
Sbjct: 452 TGHSNGSVRIYDASHGDIQ----------DNASFEVNLSRTLN-----KAKELAVDKISF 496
Query: 174 HATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFI 233
A L+ + V ++ + EN + N +
Sbjct: 497 -AAETLELAVSIETGDVVLFKYEVNQF----YSVENRPESGDLEMNFRRFSLNNTNGVLV 551
Query: 234 DVVKSLPPRERT 245
DV P R
Sbjct: 552 DVRDRAPTGVRQ 563
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 79.4 bits (195), Expect = 3e-17
Identities = 25/216 (11%), Positives = 51/216 (23%), Gaps = 38/216 (17%)
Query: 43 DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 102
+ G ++ RL + I L + + + +
Sbjct: 75 TTPNPRTGGEHPAIISRG-PCNRLLLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYM 131
Query: 103 CWHAT-NPDLLSTASGDKTVRIWDARTQKSQI--------------------MLASGSFD 141
H N + A T+ I +LA S D
Sbjct: 132 YGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD 191
Query: 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 199
+ ++ L D + ++ + + + D+TV +D R
Sbjct: 192 GILDVYNL-SSPDQASSRFPVDEEAKIKEVKFA---DNGYWM-VVECDQTVVCFDLRKDV 246
Query: 200 S-------QIIATKGENINITWAPNGNTIAVGNKED 228
I K + +G + + E
Sbjct: 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES 282
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 1e-12
Identities = 29/231 (12%), Positives = 58/231 (25%), Gaps = 40/231 (17%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALD--KKGDLNKEVVYRGHT 96
N + + K + + D D ++ L K R
Sbjct: 24 QAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGG 83
Query: 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI----------------------M 134
+ N L + I D++T K
Sbjct: 84 EHPAIISRGPCN--RLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEY 141
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS-VDQLCWHATNPD--LLSTASGDKTVR 191
++ + + ++ +V+ + H D LL+ S D +
Sbjct: 142 FIWADNRGTIGFQSYEDD---SQYIVHSAKSDVEYSSGVLH---KDSLLLALYSPDGILD 195
Query: 192 IWDARTQKS-QIIATKGENINIT---WAPNGNTIAVGNKEDLVTFIDVVKS 238
+++ + E I +A NG + V + V D+ K
Sbjct: 196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD 245
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 62.5 bits (151), Expect = 2e-11
Identities = 23/192 (11%), Positives = 52/192 (27%), Gaps = 27/192 (14%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
+ S D LA S D + ++ L D + ++ +
Sbjct: 169 SDVEYSSGVLHKDSLLLALYSPDGILDVYNL-SSPDQASSRFPVDEEAKIKEVKFA---D 224
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLA---SGSFDKSVAIFALDKKGDLNKEVVYRGH 164
+ + D+TV +D R + F + +D G
Sbjct: 225 NGYWM-VVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN--------- 274
Query: 165 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITW--APNGNTIA 222
+ ++ + L+ DK + W + + + + + +G A
Sbjct: 275 ------MIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAA 328
Query: 223 VGNKEDLVTFID 234
+ D +
Sbjct: 329 ILKTNDSFNIVA 340
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 3e-07
Identities = 15/151 (9%), Positives = 44/151 (29%), Gaps = 21/151 (13%)
Query: 46 EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG--DLNKEVVYRGHTGSVDQLC 103
+K+ V ++ +G + D++V F L K
Sbjct: 209 FPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 267
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
+ ++++ ++ ++ I+ FDK + D++ + +
Sbjct: 268 IDDSGKNMIAYSNESNSLTIY--------------KFDKKTKNWTKDEE----SALCLQS 309
Query: 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
T + + + + + + I
Sbjct: 310 DTADFTDMDVVCGDGGIAAILKTNDSFNIVA 340
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 76.1 bits (186), Expect = 5e-16
Identities = 37/245 (15%), Positives = 71/245 (28%), Gaps = 56/245 (22%)
Query: 13 SPEYKLLPSGSQFHLVC----KIDDYVKHFNTHNDIKEYQA-----HGSKVHSVAWSCDG 63
S +Y L+ +G L + K + N I + +H +A SCD
Sbjct: 45 SNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN 104
Query: 64 RRLA----SGSFDKSVAIFALDKKGDLNKE--------VVYRGHTGSVDQLCWHATNPDL 111
L+ S + +A F + + K+ + + G V + W+ T P +
Sbjct: 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM 164
Query: 112 LSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 171
++ D ++ + K T +V +
Sbjct: 165 VAVCLADGSIAVLQVTETV--------------------------KVCATLPSTVAVTSV 198
Query: 172 CWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGEN--------INITWAPNGNTIAV 223
CW L + TV + Q+ ++I +++ W V
Sbjct: 199 CWSPKGKQLAV-GKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIV 257
Query: 224 GNKED 228
D
Sbjct: 258 YAAAD 262
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 69.2 bits (168), Expect = 1e-13
Identities = 25/185 (13%), Positives = 56/185 (30%), Gaps = 21/185 (11%)
Query: 57 VAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE-VVYRGHTGSVDQLCWHATNPDLLS-- 113
A G ++ D ++K + + L N L +
Sbjct: 52 FAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACM 111
Query: 114 -TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 172
++ + +D RT ++ A +K + + G V +
Sbjct: 112 MSSEYGSIIAFFDVRTFSNE---------------AKQQKRPFAYHKLLKDAGGMVIDMK 156
Query: 173 WHATNPDLLSTASGDKTVRIWDARTQK--SQIIATKGENINITWAPNGNTIAVGNKEDLV 230
W+ T P +++ D ++ + + + ++ W+P G +AVG + V
Sbjct: 157 WNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTV 216
Query: 231 TFIDV 235
Sbjct: 217 VQYLP 221
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 75.5 bits (185), Expect = 9e-16
Identities = 38/234 (16%), Positives = 69/234 (29%), Gaps = 15/234 (6%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDG---RRLASG 69
+ + + +F V ID + H S + V D + + +
Sbjct: 158 AEDDTTVIIADKFGDVYSIDINSIP-EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS 216
Query: 70 SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 129
D+ + I + + + GH V +C LL +A GD + WD +T
Sbjct: 217 DRDEHIKISHYPQCFIV--DKWLFGHKHFVSSICC--GKDYLLLSAGGDDKIFAWDWKTG 272
Query: 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 189
K+ S K E +V ++ P + K
Sbjct: 273 KNLSTFDYNSLIKPYLNDQHLAPPRFQNENN-DIIEFAVSKIIKSKNLPFVAFFVEATKC 331
Query: 190 VRIW------DARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ I QII I+++ + + + NKE + K
Sbjct: 332 IIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAK 385
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 70.1 bits (171), Expect = 6e-14
Identities = 23/205 (11%), Positives = 58/205 (28%), Gaps = 37/205 (18%)
Query: 21 SGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFAL 80
S + + K D F+ + + A + S + ++L S D
Sbjct: 34 SPNHWEFAGKWSD---DFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI----KR 86
Query: 81 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI------- 133
+ + + L + L++ A DK++ ++D +
Sbjct: 87 TAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF 146
Query: 134 ----------------MLASGSFDKSVAIFALDKKGDLNKEVVYR---GHTGSVDQLCWH 174
+ DK ++++D ++ GH + +
Sbjct: 147 CFSKRPNAISIAEDDTTVIIA--DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI 204
Query: 175 ATNPD--LLSTASGDKTVRIWDART 197
+ + T+ D+ ++I
Sbjct: 205 KDSDGHQFIITSDRDEHIKISHYPQ 229
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 1e-10
Identities = 26/211 (12%), Positives = 61/211 (28%), Gaps = 22/211 (10%)
Query: 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 113
+ ++ S DG + + + F N + D++ S
Sbjct: 7 LQNLLTSRDGSLVFAII-KNCILSFKYQ---SPNHWEFAGKWSDDFDKIQ--------ES 54
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173
+ K + + + L S D + + + L
Sbjct: 55 RNTTAKEQQGQSSENENENKKLKSNKGDSI----KRTAAKVPSPGLGAPPIYSYIRNLRL 110
Query: 174 HATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN------ITWAPNGNTIAVGNKE 227
+ L++ A DK++ ++D ++ + I+ A + T+ + +K
Sbjct: 111 TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF 170
Query: 228 DLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258
V ID+ + GH+ +
Sbjct: 171 GDVYSIDINSIPEEKFTQEPILGHVSMLTDV 201
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 2e-14
Identities = 27/211 (12%), Positives = 66/211 (31%), Gaps = 38/211 (18%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG-----DLNKEVVYRGHTGSVDQLC 103
AH ++S++ + D S + D + ++ L+ K T +
Sbjct: 175 AHTYHINSISINSDYETYLS-ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAE 233
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
+H + + +S T+R+ D R AS D+ +F ++ D + +
Sbjct: 234 FHPNSCNTFVYSSSKGTIRLCDMR--------ASALCDRHSKLF--EEPEDPSNRSFFSE 283
Query: 164 HTGSVDQLCWHATNPDLLSTASG-DKTVRIWDARTQKSQIIATKG--------------- 207
S+ + + + +V++WD + + +
Sbjct: 284 IISSISDVKFS---HSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340
Query: 208 ---ENINITWAPNGNTIAVGNKEDLVTFIDV 235
+ W + + + G+ + D
Sbjct: 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDR 371
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 1e-13
Identities = 28/217 (12%), Positives = 62/217 (28%), Gaps = 37/217 (17%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE--------V 90
+ + A + +V ++ G LA+G V IF +++ +
Sbjct: 16 QVKGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYS 75
Query: 91 VYRGHTGSVDQL------------CW-HATNPDLLSTASGDKTVRIWDARTQKSQIML-- 135
++ H D L W N ++ DKT+++W + +
Sbjct: 76 TFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYN 135
Query: 136 ----------ASGSFDKSVAIFALDKKGDL--NKEVVYRGHTGSVDQLCWHATNPDLLST 183
+ V +F + + HT ++ + ++ LS
Sbjct: 136 LKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS- 194
Query: 184 ASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNT 220
+ D + +W + N+ T
Sbjct: 195 -ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT 230
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 5e-08
Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 20/140 (14%)
Query: 29 CKIDDYVKHFNTHNDIKE---YQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD 85
D + K F D + S + V +S GR + + SV ++ D +
Sbjct: 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-YLSVKVW--DLNME 316
Query: 86 LNKEVVYRGHTGSVDQLCWHATNP--------------DLLSTASGDKTVRIWDARTQKS 131
Y+ H +LC N ++ T S + R++D T++
Sbjct: 317 NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376
Query: 132 QIMLASGSFDKSVAIFALDK 151
+ AS +K + K
Sbjct: 377 ITLEASRENNKPRTVLKPRK 396
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 6e-07
Identities = 19/162 (11%), Positives = 52/162 (32%), Gaps = 12/162 (7%)
Query: 66 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRI 123
+A + KG ++ +V + + + N LL+T V I
Sbjct: 1 MAGAGGGNDIQWCFSQVKGAVDDDV---AEADIISTVEF---NHSGELLATGDKGGRVVI 54
Query: 124 WDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW-HATNPDLLS 182
+ + + G ++ + + + D K + ++++ W N
Sbjct: 55 FQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSL---EIEEKINKIRWLPQKNAAQFL 111
Query: 183 TASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVG 224
++ DKT+++W + + + + + +
Sbjct: 112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLR 153
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 1e-13
Identities = 21/239 (8%), Positives = 65/239 (27%), Gaps = 35/239 (14%)
Query: 25 FHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG 84
++ D S + + + + G + VA F L
Sbjct: 240 LEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL-SPTTVVCGFKNGFVAEFDLTDPE 298
Query: 85 DLNKEVVYRGHTGSVDQL--CWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDK 142
+ + H + + + ++ST + D I++ + + S
Sbjct: 299 VPS--FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS----- 351
Query: 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ- 201
R ++ + + + + ++R +R +
Sbjct: 352 -------------------RFRGSNLVPVVYCPQIYSYIYSDG-ASSLRAVPSRAAFAVH 391
Query: 202 -IIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSLW 259
+++ + I + + G+ + + + + L + + ++ LW
Sbjct: 392 PLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL---HGIKNSSATQKSLRLW 447
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 2e-07
Identities = 22/199 (11%), Positives = 54/199 (27%), Gaps = 28/199 (14%)
Query: 20 PSGSQFHLVCKIDDYVKHFNTHND----IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSV 75
+D Y FN + + GS + V + S+
Sbjct: 320 DFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSL 379
Query: 76 AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIML 135
++ + +P +L+ S D ++ I +A + +
Sbjct: 380 RAVPSR---AAFAVHPLVSRETTITAIGVSRLHPMVLA-GSADGSLIITNAARRLLHGIK 435
Query: 136 ASGSFDKSVAIFALDKKGDLNKEVVYRG------------------HTGSVDQLCWHATN 177
S + KS+ ++ D +K + H ++ W+ T+
Sbjct: 436 NSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETS 495
Query: 178 P--DLLSTASGDKTVRIWD 194
+ ++ + +
Sbjct: 496 AGGKCYAFSNSAGLLTLEY 514
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 7e-12
Identities = 24/216 (11%), Positives = 52/216 (24%), Gaps = 36/216 (16%)
Query: 11 PKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
+ + D V+ +AH + + V + +A+ S
Sbjct: 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS 214
Query: 71 FDKS-VAIFALDKKGDLNKEVVYRGHT--GSVDQLCWHATNPDLLSTASGDKTVRIWDAR 127
D + + +F + D +R V + W L+ S T+ +++
Sbjct: 215 QDGTIIRVFKTE---DGVLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIF 270
Query: 128 TQK--SQIMLASGSFDK------SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD 179
+ + L K S+ F L
Sbjct: 271 NDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH---------------------VRGC 309
Query: 180 LLSTASGDKTVRIWDARTQKSQIIATKGENINITWA 215
++ S V +W + +
Sbjct: 310 KIAWISESSLVVVWPHTRMIETFKVVFDDEMERWLI 345
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 5e-10
Identities = 17/171 (9%), Positives = 42/171 (24%), Gaps = 15/171 (8%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 98
T N I + V ++ D L + KS I+ + +
Sbjct: 7 ITRNPIVPENHVSNPVTDYEFNQDQSCLILST-LKSFEIYNVHPVAHI-----MSQEMRH 60
Query: 99 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGS------FDKSVAIFALDKK 152
+ ++ + + V IWD ++ + + + + +
Sbjct: 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDV 120
Query: 153 ---GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200
+C + + S + I ++ S
Sbjct: 121 ISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGS 171
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Length = 337 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 5e-05
Identities = 25/187 (13%), Positives = 50/187 (26%), Gaps = 14/187 (7%)
Query: 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDK-KGDLNKEVVYRGHTGSVDQLCWHATNP 109
++ +AW+ DG +L D V D + D L +
Sbjct: 134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH- 192
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
+SG + AR + + +D + R
Sbjct: 193 ----ESSGVMATPFYTARKDIDPADPTAYRT----GLLTMDLETGEMAMREVRIMDVFYF 244
Query: 170 QLCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIATKGENINITWAPNGNTIAVGNKED 228
A NP + +D S + + ++ + +G+T+ +G
Sbjct: 245 ST---AVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301
Query: 229 LVTFIDV 235
+ D
Sbjct: 302 DLAAYDA 308
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 264 | |||
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.98 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.97 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.97 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.97 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.97 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.97 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.97 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.96 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.96 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.96 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.96 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.96 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.96 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.96 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.96 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.96 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.96 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.96 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.96 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.96 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.96 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.96 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.96 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.96 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.95 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.95 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.95 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.95 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.95 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.95 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.95 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.95 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.95 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.95 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.95 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.95 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.95 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.94 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.94 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.94 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.94 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.94 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.94 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.94 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.94 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.94 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.94 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.94 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.94 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.94 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.94 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.94 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.94 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.93 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.93 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.93 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.93 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.93 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.93 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.93 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.93 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.93 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.93 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.93 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.93 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.93 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.93 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.92 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.92 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.92 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.92 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.92 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.92 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.92 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.92 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.92 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.91 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.91 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.9 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.9 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.88 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.88 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.88 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.88 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.87 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.87 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.87 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.86 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.86 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.85 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.83 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.82 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.8 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.73 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.73 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.73 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.72 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.71 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.68 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.67 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.67 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.66 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.65 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.63 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.62 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.62 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.59 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.58 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.57 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.56 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.55 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.54 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.51 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.49 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.49 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.48 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.46 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.44 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.43 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.42 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.4 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.36 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.36 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.35 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.34 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.34 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.33 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.31 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.29 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.29 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.26 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.26 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.24 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.23 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.2 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.18 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.13 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.12 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.12 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.1 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.07 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.05 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.05 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.04 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.04 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.96 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.96 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.96 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.9 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.89 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.88 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.88 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.82 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.81 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.8 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.79 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.78 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.76 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.74 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.69 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.67 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.63 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.63 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.62 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.62 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.6 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.58 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.54 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.51 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.49 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.48 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.43 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.42 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.42 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.41 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.41 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.39 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.39 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.36 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.27 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.25 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.25 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.2 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.2 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.18 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.04 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.97 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.85 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.82 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.8 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.67 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.65 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.59 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.55 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.45 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.44 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.4 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.38 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.36 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.17 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.12 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.12 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.12 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.07 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.05 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.04 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.01 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.99 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.94 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.92 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.9 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 96.77 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.71 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 96.71 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 96.67 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 96.65 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.65 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.53 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.46 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 96.42 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.41 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.4 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.32 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.32 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.2 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.04 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.01 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 95.88 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.85 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 95.67 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 95.66 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 95.29 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 95.16 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 95.07 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 94.94 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 94.74 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 94.7 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 94.4 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 94.29 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 94.21 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 94.1 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 94.02 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 94.01 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 93.76 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 93.5 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 92.9 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 92.87 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 92.09 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 92.02 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 91.94 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 88.89 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 86.6 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 86.52 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 85.27 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 85.11 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 84.34 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 84.33 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 83.55 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 82.81 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 81.98 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 81.75 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 81.41 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 80.79 |
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=236.86 Aligned_cols=215 Identities=17% Similarity=0.217 Sum_probs=175.1
Q ss_pred eEeecCCCeeEEEeecCceEEecccc--cccc----ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCccc
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTH--NDIK----EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE 89 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~----~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~ 89 (264)
..+.|.+ .+++++.|+.|++|+.. +.+. .+.+|.+.|.+++|+|+|++|++|+.|++|++||+... ...
T Consensus 88 ~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~---~~~ 162 (344)
T 4gqb_B 88 LTWVGER--GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ---VVL 162 (344)
T ss_dssp EEEETTT--EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEE
T ss_pred EEEeCCC--eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC---cEE
Confidence 3555543 35688999999999753 3222 24489999999999999999999999999999998642 233
Q ss_pred EEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc----------------------ceEEEeecCCCcEEEE
Q psy9316 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS----------------------QIMLASGSFDKSVAIF 147 (264)
Q Consensus 90 ~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------------------~~~~~~~~~d~~i~i~ 147 (264)
..+.+|...|.+++|++++..++++++.|++|++||+++++. ..++++|+.|+.|++|
T Consensus 163 ~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~w 242 (344)
T 4gqb_B 163 SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV 242 (344)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEE
Confidence 457899999999999998878899999999999999987542 1257889999999999
Q ss_pred EeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce-eEeecCceEEEEEcCCCC-EEEEee
Q psy9316 148 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-IIATKGENINITWAPNGN-TIAVGN 225 (264)
Q Consensus 148 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~-~~~~~~~~~~v~~sp~g~-~la~gs 225 (264)
|++.... ...+.+|...|.+++|+|++..+|++++.||+|+|||+++++.. ...+.+.+.+++|+|+++ .|++|+
T Consensus 243 d~~~~~~---~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s 319 (344)
T 4gqb_B 243 DTKSTSC---VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVG 319 (344)
T ss_dssp ESCC--C---CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred ECCCCcE---EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEc
Confidence 9875443 24578899999999999987778999999999999999988753 334567799999999987 567899
Q ss_pred CCCeEEEEEcccC
Q psy9316 226 KEDLVTFIDVVKS 238 (264)
Q Consensus 226 ~d~~i~~~d~~~~ 238 (264)
.|+.|++|++...
T Consensus 320 ~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 320 WDHQVVHHVVPTE 332 (344)
T ss_dssp TTSCEEEEECCC-
T ss_pred CCCeEEEEECCCC
Confidence 9999999998753
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=235.79 Aligned_cols=230 Identities=21% Similarity=0.310 Sum_probs=188.3
Q ss_pred EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG 94 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~ 94 (264)
.+.|.+. +.++++.|+.+++|+. .+..+.+.+|.+.|.+++|+|++++|++|+.|++|++||+... .....+.+
T Consensus 115 ~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~---~~~~~~~~ 190 (410)
T 1vyh_C 115 IFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF---ECIRTMHG 190 (410)
T ss_dssp EECSSSS-EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS---CEEECCCC
T ss_pred EEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceeEEEcC
Confidence 5666664 5678999999999975 4567889999999999999999999999999999999998642 22234678
Q ss_pred ccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEeccCCCc
Q psy9316 95 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFALDKKGDL 155 (264)
Q Consensus 95 h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~~~ 155 (264)
|...|.+++|+|++ +++++++.|++|++||++++.. ...+++++.|+.|++|++....
T Consensus 191 h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-- 267 (410)
T 1vyh_C 191 HDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-- 267 (410)
T ss_dssp CSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--
T ss_pred CCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--
Confidence 99999999999955 7889999999999999987642 1257899999999999986532
Q ss_pred cceEEEeccccceeeEEEcCCC-------------------CCEEEEEeCCCcEEEEeCCCCccee--EeecCceEEEEE
Q psy9316 156 NKEVVYRGHTGSVDQLCWHATN-------------------PDLLSTASGDKTVRIWDARTQKSQI--IATKGENINITW 214 (264)
Q Consensus 156 ~~~~~~~~h~~~i~~i~~~~~~-------------------~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~ 214 (264)
....+.+|...|.+++|+|.. +.++++|+.||.|++||++++.... ..+...+.+++|
T Consensus 268 -~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 346 (410)
T 1vyh_C 268 -CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346 (410)
T ss_dssp -EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred -eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEE
Confidence 223567899999999999853 4589999999999999999887532 234567889999
Q ss_pred cCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 215 APNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 215 sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
+|+|++|++|+.|+.|++||+..+. ...++.+|...+.+|
T Consensus 347 ~~~g~~l~s~s~D~~i~vwd~~~~~----~~~~~~~h~~~v~~l 386 (410)
T 1vyh_C 347 HSGGKFILSCADDKTLRVWDYKNKR----CMKTLNAHEHFVTSL 386 (410)
T ss_dssp CSSSSCEEEEETTTEEEEECCTTSC----CCEEEECCSSCEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCc----eEEEEcCCCCcEEEE
Confidence 9999999999999999999986543 334677888877765
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=224.94 Aligned_cols=221 Identities=23% Similarity=0.368 Sum_probs=176.8
Q ss_pred ceEeecCCCeeEEEeecCceEEecccc----ccccccccCCCCEEEEEECCC--CCeEEEEECCCcEEEEEeccCCCCcc
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTH----NDIKEYQAHGSKVHSVAWSCD--GRRLASGSFDKSVAIFALDKKGDLNK 88 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~h~~~V~~l~~s~~--g~~l~s~s~dg~i~v~~~~~~~~~~~ 88 (264)
...+.|.+. .+++++.|+.+++|+.. +.+.++.+|.+.|.+++|+|+ +++|++|+.|++|++|++.. +....
T Consensus 14 ~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~-~~~~~ 91 (297)
T 2pm7_B 14 DAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN-GRWSQ 91 (297)
T ss_dssp EEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS-SCBCC
T ss_pred EEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC-CceEE
Confidence 346667665 56789999999999753 456788999999999999864 89999999999999999864 22233
Q ss_pred cEEEecccccEEeEEEecCC-CCeEEEEeCCCcEEEEECCCCCc----------------------------------ce
Q psy9316 89 EVVYRGHTGSVDQLCWHATN-PDLLSTASGDKTVRIWDARTQKS----------------------------------QI 133 (264)
Q Consensus 89 ~~~~~~h~~~v~~i~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~----------------------------------~~ 133 (264)
...+..|...|.+++|+|+. +.++++++.|+.|++||++.... ..
T Consensus 92 ~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~ 171 (297)
T 2pm7_B 92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR 171 (297)
T ss_dssp CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CC
T ss_pred EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcc
Confidence 34567899999999999863 57899999999999999976421 12
Q ss_pred EEEeecCCCcEEEEEeccCCCcc-ceEEEeccccceeeEEEcCCC--CCEEEEEeCCCcEEEEeCCCCcc--e--e---E
Q psy9316 134 MLASGSFDKSVAIFALDKKGDLN-KEVVYRGHTGSVDQLCWHATN--PDLLSTASGDKTVRIWDARTQKS--Q--I---I 203 (264)
Q Consensus 134 ~~~~~~~d~~i~i~~~~~~~~~~-~~~~~~~h~~~i~~i~~~~~~--~~~i~s~~~dg~i~iwD~~t~~~--~--~---~ 203 (264)
.+++|+.|+.|++|+++...... ....+.+|...|.+++|+|+. +.+|++++.|++|+|||+++... . . .
T Consensus 172 ~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~ 251 (297)
T 2pm7_B 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEE 251 (297)
T ss_dssp EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSS
T ss_pred eEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecc
Confidence 68899999999999987543221 233577899999999999974 57899999999999999987431 1 1 1
Q ss_pred eecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 204 ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 204 ~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.+...+.+++|+|+|++||+++.|+.|++|++..
T Consensus 252 ~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 252 KFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 2345688999999999999999999999999763
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-31 Score=225.37 Aligned_cols=210 Identities=18% Similarity=0.330 Sum_probs=158.3
Q ss_pred ecCCCCCce--EeecCCCeeEEEeecCceEEecccc-------ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEE
Q psy9316 8 FHTPKSPEY--KLLPSGSQFHLVCKIDDYVKHFNTH-------NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIF 78 (264)
Q Consensus 8 ~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~~-------~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~ 78 (264)
|.++..+-. .+.|.+..++++++.|+.+++|+.. ..++.+.+|...|.+++|+|++++|++|+.|++|++|
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w 92 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 444444333 5566666678899999999999753 2356789999999999999999999999999999999
Q ss_pred EeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc------------------------ceE
Q psy9316 79 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS------------------------QIM 134 (264)
Q Consensus 79 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~------------------------~~~ 134 (264)
|+... .....+.+|...|.+++|+|++ .++++++.|++|++||++.... ...
T Consensus 93 d~~~~---~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 93 DVATG---ETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp ETTTT---EEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCE
T ss_pred ECCCC---CeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence 98642 2234577999999999999854 7899999999999999875321 115
Q ss_pred EEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-EeecCceEEEE
Q psy9316 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATKGENINIT 213 (264)
Q Consensus 135 ~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~~~~~~v~ 213 (264)
+++++.|+.|++|+++.. .....+.+|...|.+++|+|+ +.+|++++.||.|++||+++++... ......+.+++
T Consensus 169 l~s~~~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 244 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQF---QIEADFIGHNSNINTLTASPD-GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244 (319)
T ss_dssp EEEEETTSCEEEEETTTT---EEEEEECCCCSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEE
T ss_pred EEEEeCCCEEEEEECCcc---hhheeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEE
Confidence 788999999999998642 223456789999999999985 5799999999999999998875322 11223344444
Q ss_pred EcCCCCEEEEee
Q psy9316 214 WAPNGNTIAVGN 225 (264)
Q Consensus 214 ~sp~g~~la~gs 225 (264)
|+|++.+|++++
T Consensus 245 ~sp~~~~la~~~ 256 (319)
T 3frx_A 245 FSPNRYWLAAAT 256 (319)
T ss_dssp ECSSSSEEEEEE
T ss_pred EcCCCCEEEEEc
Confidence 444444444443
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-31 Score=230.14 Aligned_cols=217 Identities=17% Similarity=0.261 Sum_probs=173.5
Q ss_pred CceEeecCCCeeEEEeecCceEEeccccc--cc--c--ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCc
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTHN--DI--K--EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN 87 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~--~--~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~ 87 (264)
....+.|.+ . .++++.|+.|++|+..+ .. . ...+|.+.|.+++|+|++++|++|+.|+.|++||+... .
T Consensus 98 ~~~~~s~d~-~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~---~ 172 (357)
T 4g56_B 98 TDVAWVSEK-G-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK---A 172 (357)
T ss_dssp EEEEEETTT-E-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT---E
T ss_pred EEEEEcCCC-C-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC---c
Confidence 344666655 3 45788899999997532 21 1 23479999999999999999999999999999998642 2
Q ss_pred ccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc----------------------ceEEEeecCCCcEE
Q psy9316 88 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS----------------------QIMLASGSFDKSVA 145 (264)
Q Consensus 88 ~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------------------~~~~~~~~~d~~i~ 145 (264)
....+.+|...|.+++|++.+..++++++.||.|++||+++++. ..++++|+.|+.|+
T Consensus 173 ~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~ 252 (357)
T 4g56_B 173 VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVS 252 (357)
T ss_dssp EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEE
T ss_pred EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccccee
Confidence 33457789999999999998777899999999999999986531 12578899999999
Q ss_pred EEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce-eEeecCceEEEEEcC-CCCEEEE
Q psy9316 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-IIATKGENINITWAP-NGNTIAV 223 (264)
Q Consensus 146 i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~-~~~~~~~~~~v~~sp-~g~~la~ 223 (264)
+|+++... ....+.+|...|.+++|+|++..+|++++.||+|+|||+++++.. ...+.+.+.+++|+| ++++|++
T Consensus 253 ~wd~~~~~---~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s 329 (357)
T 4g56_B 253 LVNIKNPD---SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTT 329 (357)
T ss_dssp EEESSCGG---GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred EEECCCCc---EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEE
Confidence 99986532 234577899999999999987788999999999999999988753 334567799999999 8999999
Q ss_pred eeCCCeEEEEEcccC
Q psy9316 224 GNKEDLVTFIDVVKS 238 (264)
Q Consensus 224 gs~d~~i~~~d~~~~ 238 (264)
|+.|+.|++||+...
T Consensus 330 ~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 330 VGWDHKVLHHHLPSE 344 (357)
T ss_dssp EETTSCEEEEECC--
T ss_pred EcCCCeEEEEECCCC
Confidence 999999999998653
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-31 Score=224.60 Aligned_cols=233 Identities=18% Similarity=0.263 Sum_probs=183.7
Q ss_pred CceEeecCCCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEE
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~ 91 (264)
....+.|.+. ++++++.|+.+++|+.. ..++.+..|..+|.+++|+|++++|++|+.|++|++||+.... ....
T Consensus 17 ~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~---~~~~ 92 (304)
T 2ynn_A 17 KGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE---KVVD 92 (304)
T ss_dssp EEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC---EEEE
T ss_pred EEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc---EEEE
Confidence 4446777774 56788999999999764 4577888999999999999999999999999999999986532 2345
Q ss_pred EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc---------------------ceEEEeecCCCcEEEEEec
Q psy9316 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---------------------QIMLASGSFDKSVAIFALD 150 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---------------------~~~~~~~~~d~~i~i~~~~ 150 (264)
+.+|...|.+++|+|++ .++++|+.||+|++||++++.. ...+++|+.|+.|++|+++
T Consensus 93 ~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~ 171 (304)
T 2ynn_A 93 FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171 (304)
T ss_dssp EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETT
T ss_pred EeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 78999999999999965 6889999999999999876421 1358899999999999986
Q ss_pred cCCCccceEEEeccccceeeEEEcCC-CCCEEEEEeCCCcEEEEeCCCCccee--EeecCceEEEEEcCCCCEEEEeeCC
Q psy9316 151 KKGDLNKEVVYRGHTGSVDQLCWHAT-NPDLLSTASGDKTVRIWDARTQKSQI--IATKGENINITWAPNGNTIAVGNKE 227 (264)
Q Consensus 151 ~~~~~~~~~~~~~h~~~i~~i~~~~~-~~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d 227 (264)
..... ......|...+..+.|+|. ++.+|++++.||+|++||+++++... ..+...+..++|+|++++|++|+.|
T Consensus 172 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~D 249 (304)
T 2ynn_A 172 QSTPN--FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249 (304)
T ss_dssp CSSCS--EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred CCCcc--ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCC
Confidence 54322 1223456678999999874 45689999999999999999987532 3345678899999999999999999
Q ss_pred CeEEEEEcccCCCCCCCcccCcccceeeee
Q psy9316 228 DLVTFIDVVKSLPPRERTLTSRGHLMETRS 257 (264)
Q Consensus 228 ~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~ 257 (264)
+.|++||+++... ..++.+|...+.+
T Consensus 250 g~i~iWd~~~~~~----~~~~~~~~~~~~~ 275 (304)
T 2ynn_A 250 GTLKIWNSSTYKV----EKTLNVGLERSWC 275 (304)
T ss_dssp SCEEEEETTTCCE----EEEECCSSSSEEE
T ss_pred CeEEEEECCCCce----eeeccCCCccEEE
Confidence 9999999875332 2344455444433
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=237.41 Aligned_cols=241 Identities=21% Similarity=0.313 Sum_probs=188.6
Q ss_pred CceEeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCC----CCc
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG----DLN 87 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~----~~~ 87 (264)
....+.|.+. ++++++.|+.+++|+. ......+.+|...|.+++|+|++++|++|+.|+.+++|++.... ...
T Consensus 70 ~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~ 148 (380)
T 3iz6_a 70 YSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMP 148 (380)
T ss_dssp EEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSST
T ss_pred EEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCcc
Confidence 4446777664 5678999999999975 45677888999999999999999999999999999999986421 122
Q ss_pred ccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------------ceEEEeecCCC
Q psy9316 88 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------------QIMLASGSFDK 142 (264)
Q Consensus 88 ~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------------~~~~~~~~~d~ 142 (264)
....+.+|.+.|.++.|.|.++..+++|+.|++|++||+++++. ..++++|+.|+
T Consensus 149 ~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~ 228 (380)
T 3iz6_a 149 VSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT 228 (380)
T ss_dssp TCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS
T ss_pred ceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC
Confidence 22346789999999999998777899999999999999976431 23678999999
Q ss_pred cEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee--c-------CceEEEE
Q psy9316 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT--K-------GENINIT 213 (264)
Q Consensus 143 ~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~--~-------~~~~~v~ 213 (264)
.|++||++.... ....+.+|...|.+++|+|+ +.+|++++.||+|++||++++....... . ..+.+++
T Consensus 229 ~v~~wd~~~~~~--~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (380)
T 3iz6_a 229 TVRLWDLRITSR--AVRTYHGHEGDINSVKFFPD-GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA 305 (380)
T ss_dssp CEEEEETTTTCC--CCEEECCCSSCCCEEEECTT-SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEE
T ss_pred eEEEEECCCCCc--ceEEECCcCCCeEEEEEecC-CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEE
Confidence 999999874432 23457889999999999985 5789999999999999999876432211 1 1267899
Q ss_pred EcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 214 WAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 214 ~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
|+|+|++|++|+.|+.|++||+..+....+-.....+|...+.+|
T Consensus 306 ~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 350 (380)
T 3iz6_a 306 FSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred ECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence 999999999999999999999865433221111235777777665
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=227.43 Aligned_cols=222 Identities=23% Similarity=0.401 Sum_probs=177.0
Q ss_pred CceEeecCCCeeEEEeecCceEEeccccc----cccccccCCCCEEEEEECC--CCCeEEEEECCCcEEEEEeccCCCCc
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTHN----DIKEYQAHGSKVHSVAWSC--DGRRLASGSFDKSVAIFALDKKGDLN 87 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~h~~~V~~l~~s~--~g~~l~s~s~dg~i~v~~~~~~~~~~ 87 (264)
....+.|.+. .+++++.|+.+++|+... .+..+.+|.+.|.+++|+| ++++|++|+.|++|++|++.. +...
T Consensus 17 ~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~-~~~~ 94 (316)
T 3bg1_A 17 HDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN-GTWE 94 (316)
T ss_dssp EEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS-SCCC
T ss_pred EEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC-Ccce
Confidence 4446667664 567899999999998643 3567889999999999986 489999999999999999864 2223
Q ss_pred ccEEEecccccEEeEEEecCC-CCeEEEEeCCCcEEEEECCCCCc-----------------------------------
Q psy9316 88 KEVVYRGHTGSVDQLCWHATN-PDLLSTASGDKTVRIWDARTQKS----------------------------------- 131 (264)
Q Consensus 88 ~~~~~~~h~~~v~~i~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~----------------------------------- 131 (264)
....+.+|...|.+++|+|++ +.+|++++.|+.|++||++....
T Consensus 95 ~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 174 (316)
T 3bg1_A 95 KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQ 174 (316)
T ss_dssp EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSC
T ss_pred EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccccccc
Confidence 334567899999999999963 57899999999999999875310
Q ss_pred ----ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCC---CCEEEEEeCCCcEEEEeCCCCc-----
Q psy9316 132 ----QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN---PDLLSTASGDKTVRIWDARTQK----- 199 (264)
Q Consensus 132 ----~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~---~~~i~s~~~dg~i~iwD~~t~~----- 199 (264)
...+++|+.|+.|++|+++..........+.+|...|.+++|+|+. ..+|++++.||+|++||+++..
T Consensus 175 ~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~ 254 (316)
T 3bg1_A 175 KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS 254 (316)
T ss_dssp CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCB
T ss_pred CccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchh
Confidence 1358899999999999986443323334567899999999999964 3689999999999999998621
Q ss_pred -ceeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 200 -SQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 200 -~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.....+...+.+++|+|+|++||+|+.|+.|++|+...
T Consensus 255 ~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 255 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred hhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 12233466789999999999999999999999999753
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=231.54 Aligned_cols=202 Identities=15% Similarity=0.207 Sum_probs=157.7
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcc-cEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECC
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK-EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 127 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~-~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~ 127 (264)
.|.+.|.+++|+|++ +|++|+.||+|++||+........ .....+|...|.+++|+|++ ++|++|+.||+|++||++
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECC
Confidence 466789999999985 678999999999999976443221 12345899999999999955 789999999999999998
Q ss_pred CCCc--------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCC
Q psy9316 128 TQKS--------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD 187 (264)
Q Consensus 128 ~~~~--------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~d 187 (264)
+++. ..++++++.|+.|++||++....... .....|...+.+++|+|.+..++++|+.|
T Consensus 158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ-IGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE-CC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeee-eecceeeccceeeeecCCCCcceEEeccC
Confidence 7542 12578899999999999876543221 11234555789999999888899999999
Q ss_pred CcEEEEeCCCCcce--eEeecCceEEEEEcCCC-CEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 188 KTVRIWDARTQKSQ--IIATKGENINITWAPNG-NTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 188 g~i~iwD~~t~~~~--~~~~~~~~~~v~~sp~g-~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
|.|++||+++++.. +..+...+.+++|+|+| ++|++|+.|+.|++||++.+. ..+.+||...|++|
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-----~~~~~~H~~~V~~v 305 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-----LFRSQAHRDFVRDA 305 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-----EEEECCCSSCEEEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-----EEEEcCCCCCEEEE
Confidence 99999999988753 33456678999999998 589999999999999987543 23578999988887
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.1e-30 Score=220.06 Aligned_cols=231 Identities=20% Similarity=0.353 Sum_probs=185.2
Q ss_pred EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCC-CcccEEEe
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD-LNKEVVYR 93 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~-~~~~~~~~ 93 (264)
.+.|.+ .++++++.|+.+++|+. .+.+..+..|.+.|.+++|+|++++|++|+.|+.|++|++..... ......+.
T Consensus 62 ~~s~d~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~ 140 (340)
T 1got_B 62 HWGTDS-RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140 (340)
T ss_dssp EECTTS-SEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE
T ss_pred EECCCC-CEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEec
Confidence 555555 46678999999999975 456677889999999999999999999999999999999865321 22234467
Q ss_pred cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEeccCCC
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFALDKKGD 154 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~~ 154 (264)
+|...|.++.|.+.+ .+++++.|++|++||+++++. ...+++|+.|+.|++|+++...
T Consensus 141 ~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~- 217 (340)
T 1got_B 141 GHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM- 217 (340)
T ss_dssp CCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-
T ss_pred CCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-
Confidence 899999999998744 588999999999999987532 1257899999999999986532
Q ss_pred ccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe-ec---CceEEEEEcCCCCEEEEeeCCCeE
Q psy9316 155 LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA-TK---GENINITWAPNGNTIAVGNKEDLV 230 (264)
Q Consensus 155 ~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~-~~---~~~~~v~~sp~g~~la~gs~d~~i 230 (264)
....+.+|...|.+++|+|+ +.+|++++.||+|++||+++.+..... +. ..+.+++|+|+|++|++|+.|+.|
T Consensus 218 --~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i 294 (340)
T 1got_B 218 --CRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294 (340)
T ss_dssp --EEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred --eEEEEcCCcCCEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeE
Confidence 23457789999999999985 578999999999999999987643322 22 247889999999999999999999
Q ss_pred EEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 231 TFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 231 ~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
++||+..+. ...++.||...+.+|
T Consensus 295 ~vwd~~~~~----~~~~~~~h~~~v~~~ 318 (340)
T 1got_B 295 NVWDALKAD----RAGVLAGHDNRVSCL 318 (340)
T ss_dssp EEEETTTCC----EEEEEECCSSCEEEE
T ss_pred EEEEcccCc----EeeEeecCCCcEEEE
Confidence 999986532 344677898888776
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-30 Score=220.05 Aligned_cols=238 Identities=25% Similarity=0.444 Sum_probs=182.3
Q ss_pred eEeecCCCeeEEEeecCceEEecccccc-----ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccE
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTHND-----IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV 90 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~ 90 (264)
..+.|.+. ++++++.|+.+++|+.... .....+|.+.|.+++|+|++++|++|+.|+++++|++... ......
T Consensus 22 l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~-~~~~~~ 99 (345)
T 3fm0_A 22 LAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-DFECVT 99 (345)
T ss_dssp EEECTTSS-CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC--EEEEE
T ss_pred EEECCCCC-EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC-CeEEEE
Confidence 46777764 5678999999999976432 1223689999999999999999999999999999998642 223334
Q ss_pred EEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc----------------------ceEEEeecCCCcEEEEE
Q psy9316 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS----------------------QIMLASGSFDKSVAIFA 148 (264)
Q Consensus 91 ~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------------------~~~~~~~~~d~~i~i~~ 148 (264)
.+.+|...|.+++|+|++ ++|++++.|+.|++||++.... ...+++++.|+.|++|+
T Consensus 100 ~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~ 178 (345)
T 3fm0_A 100 TLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178 (345)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEE
T ss_pred EccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 578999999999999954 7899999999999999976421 12478899999999999
Q ss_pred eccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc-------------e-eE----eecCceE
Q psy9316 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------Q-II----ATKGENI 210 (264)
Q Consensus 149 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~-------------~-~~----~~~~~~~ 210 (264)
.+... ......+.+|...|.+++|+|+ +.+|++++.||+|++||...... . .. .+...+.
T Consensus 179 ~~~~~-~~~~~~~~~h~~~v~~l~~sp~-g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 256 (345)
T 3fm0_A 179 EEEDD-WVCCATLEGHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIY 256 (345)
T ss_dssp EETTE-EEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEE
T ss_pred ecCCC-EEEEEEecCCCCceEEEEECCC-CCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEE
Confidence 86432 1223456789999999999985 57899999999999999743210 0 00 1334578
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcc-----cCcccceeeeee
Q psy9316 211 NITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTL-----TSRGHLMETRSL 258 (264)
Q Consensus 211 ~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~-----~~~~h~~~~~~~ 258 (264)
+++|+|++..|++++.|+.|++|++.......+... ...||...+.+|
T Consensus 257 ~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 309 (345)
T 3fm0_A 257 DIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309 (345)
T ss_dssp EEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred EEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence 999999999999999999999999876543332221 235888888776
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=225.94 Aligned_cols=215 Identities=21% Similarity=0.349 Sum_probs=177.0
Q ss_pred CCceEeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccE
Q psy9316 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV 90 (264)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~ 90 (264)
.....+.|.+. ++++|+.|+.+++|+. .+.++++.+|.+.|.+++|+|++++|++|+.|++|++||+.... ...
T Consensus 153 V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~---~~~ 228 (410)
T 1vyh_C 153 VQDISFDHSGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY---CVK 228 (410)
T ss_dssp EEEEEECTTSS-EEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC---EEE
T ss_pred EEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---EEE
Confidence 34446667664 6678999999999965 45678889999999999999999999999999999999986522 234
Q ss_pred EEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc---------------------------------------
Q psy9316 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--------------------------------------- 131 (264)
Q Consensus 91 ~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------------------------------- 131 (264)
.+.+|...|.++.|+|++ .++++++.|+.|++||+++++.
T Consensus 229 ~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 229 TFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred EEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence 577999999999999854 7899999999999999976531
Q ss_pred ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCce
Q psy9316 132 QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGEN 209 (264)
Q Consensus 132 ~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~ 209 (264)
...+++|+.|+.|++|+++... ....+.+|...|.+++|+|. +.+|++++.||.|++||+++++. ....+...+
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~-g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v 383 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTGM---CLMTLVGHDNWVRGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV 383 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECSS-SSCEEEEETTTEEEEECCTTSCCCEEEECCSSCE
T ss_pred CCEEEEEeCCCeEEEEECCCCc---eEEEEECCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcE
Confidence 1258889999999999986532 23456789999999999985 56788999999999999988764 233456679
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 210 INITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 210 ~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.+++|+|++.+|++|+.|+.|++||++
T Consensus 384 ~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 384 TSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999999999864
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-30 Score=217.10 Aligned_cols=206 Identities=14% Similarity=0.224 Sum_probs=167.6
Q ss_pred cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEE
Q psy9316 43 DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122 (264)
Q Consensus 43 ~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~ 122 (264)
..++|.+|.+.|.+++|+|++++|++|+.||+|++||+... .....+..|...|.+++|+|++ +++++|+.|++|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ---VEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIR 80 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---ceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEE
Confidence 34678899999999999999999999999999999998642 2234577899999999999855 7899999999999
Q ss_pred EEECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEE
Q psy9316 123 IWDARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST 183 (264)
Q Consensus 123 vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s 183 (264)
+||+++++.. ..+++|+.|+.|++|+++.... ....+.+|...|.+++|+|.++.+|++
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--~~~~~~~h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA--LEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE--EEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc--hhhhhcccCCcEEEEEECCCCCCEEEE
Confidence 9999876421 2578999999999999865422 234567899999999999977889999
Q ss_pred EeCCCcEEEEeCCCCcceeEee---cCceEEEEEcC--CCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 184 ASGDKTVRIWDARTQKSQIIAT---KGENINITWAP--NGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 184 ~~~dg~i~iwD~~t~~~~~~~~---~~~~~~v~~sp--~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
|+.||+|++||+++........ ...+..++|+| ++++|++|+.|+.|++||++.+. ...++.||...+.++
T Consensus 159 gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~----~~~~~~~h~~~v~~~ 234 (304)
T 2ynn_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS----CVATLEGHMSNVSFA 234 (304)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEE
T ss_pred EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc----cceeeCCCCCCEEEE
Confidence 9999999999998776433322 24567788876 78899999999999999987543 345677888877765
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=217.96 Aligned_cols=224 Identities=21% Similarity=0.232 Sum_probs=180.9
Q ss_pred CeeEEEeecCceEEeccccc----cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEeccccc
Q psy9316 23 SQFHLVCKIDDYVKHFNTHN----DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 98 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~~~----~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~ 98 (264)
+..+++++.|+.+++|+... ....+.+|...|.+++|++++.++++++.|++|++||+... .....+..|...
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~---~~~~~~~~~~~~ 124 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG---KQIKSIDAGPVD 124 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTC
T ss_pred CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC---CEEEEEeCCCcc
Confidence 34677899999999997532 23467899999999999999999999999999999998642 223446678888
Q ss_pred EEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCCccceE
Q psy9316 99 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEV 159 (264)
Q Consensus 99 v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~ 159 (264)
+.+++|+|++ .++++++.||.+++||+++++.. ..+++++.|+.|.+|+++... ...
T Consensus 125 ~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~---~~~ 200 (321)
T 3ow8_A 125 AWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK---LLH 200 (321)
T ss_dssp CCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEE
T ss_pred EEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---EEE
Confidence 9999999955 78999999999999999875421 257889999999999986532 233
Q ss_pred EEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 160 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 160 ~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.+.+|..+|.+++|+|+ +.+|++++.||.|++||+++..... ..+...+.+++|+|++++|++|+.|+.|++||+..
T Consensus 201 ~~~~h~~~v~~l~~spd-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 201 TLEGHAMPIRSLTFSPD-SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT 279 (321)
T ss_dssp EECCCSSCCCEEEECTT-SCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEcccCCceeEEEEcCC-CCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence 56789999999999985 5789999999999999999876532 23456689999999999999999999999999875
Q ss_pred CCCCCCCcccCcccceeeeee
Q psy9316 238 SLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 238 ~~~~~~~~~~~~~h~~~~~~~ 258 (264)
+. ...++.+|...+.+|
T Consensus 280 ~~----~~~~~~~h~~~v~~v 296 (321)
T 3ow8_A 280 RT----CVHTFFDHQDQVWGV 296 (321)
T ss_dssp TE----EEEEECCCSSCEEEE
T ss_pred CE----EEEEEcCCCCcEEEE
Confidence 43 334567787777665
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-29 Score=215.09 Aligned_cols=210 Identities=18% Similarity=0.293 Sum_probs=167.4
Q ss_pred cCCCeeEEEeecCceEEecccc---------ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccE
Q psy9316 20 PSGSQFHLVCKIDDYVKHFNTH---------NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV 90 (264)
Q Consensus 20 ~~~~~~~~~~~~d~~~~~~~~~---------~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~ 90 (264)
+.++.++++++.|+.+++|+.. ...+.+.+|...|.+++|+|++.+|++|+.|++|++||+.... ...
T Consensus 36 ~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~---~~~ 112 (343)
T 2xzm_R 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT---TYK 112 (343)
T ss_dssp TCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC---EEE
T ss_pred CCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---EEE
Confidence 4355677899999999999753 2345688999999999999999999999999999999986532 234
Q ss_pred EEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------------------ceEEEeec
Q psy9316 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------------------QIMLASGS 139 (264)
Q Consensus 91 ~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------------------~~~~~~~~ 139 (264)
.+.+|...|.+++|+|++ .++++++.|+.|++||+..... ...+++++
T Consensus 113 ~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~ 191 (343)
T 2xzm_R 113 RFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191 (343)
T ss_dssp EEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE
T ss_pred EEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEc
Confidence 577899999999999955 6889999999999999853210 03688999
Q ss_pred CCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc-cee-EeecCceEEEEEcCC
Q psy9316 140 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-SQI-IATKGENINITWAPN 217 (264)
Q Consensus 140 ~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~-~~~-~~~~~~~~~v~~sp~ 217 (264)
.|+.|++|+.+ ......+.+|...|.+++|+|+ +.+|++++.||.|++||+.+.. ... ......+.+++|+|+
T Consensus 192 ~d~~i~iwd~~----~~~~~~~~~h~~~v~~~~~s~~-g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~ 266 (343)
T 2xzm_R 192 WDGRLKVWNTN----FQIRYTFKAHESNVNHLSISPN-GKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPK 266 (343)
T ss_dssp TTSEEEEEETT----TEEEEEEECCSSCEEEEEECTT-SSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSS
T ss_pred CCCEEEEEcCC----CceeEEEcCccccceEEEECCC-CCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCC
Confidence 99999999932 1233456789999999999985 5789999999999999995443 222 223456889999999
Q ss_pred CCEEEEeeCCCeEEEEEcccCC
Q psy9316 218 GNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 218 g~~la~gs~d~~i~~~d~~~~~ 239 (264)
+.++++|+ |+.+++||+....
T Consensus 267 ~~~la~~~-d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 267 LQWVAVGT-DQGVKIFNLMTQS 287 (343)
T ss_dssp SCEEEEEE-SSCEEEEESSSCC
T ss_pred CCEEEEEC-CCCEEEEEeCCCC
Confidence 99988665 7789999987643
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=228.02 Aligned_cols=237 Identities=14% Similarity=0.152 Sum_probs=172.2
Q ss_pred CCceEeecCCCeeEEEeecCceEEeccccc------cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCC
Q psy9316 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHN------DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDL 86 (264)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~ 86 (264)
|||++++++++.. .+..||+.++.|+... ......+|.+.|.+++|+|++++ ++++.||+|++||+......
T Consensus 51 SpDG~~las~s~d-~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~ 128 (357)
T 4g56_B 51 RRDGALLLAASSL-SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESL 128 (357)
T ss_dssp CSSSCEEEEEECS-SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------
T ss_pred CCCCCEEEEEcCC-CCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeecccccee
Confidence 4555555444321 1123688898887533 22334578999999999999765 56789999999998754322
Q ss_pred -cccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc--------------------eEEEeecCCCcEE
Q psy9316 87 -NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--------------------IMLASGSFDKSVA 145 (264)
Q Consensus 87 -~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--------------------~~~~~~~~d~~i~ 145 (264)
.......+|...|.+++|+|++ .+|++++.||.|++||+++++.. ..+++++.|+.|+
T Consensus 129 ~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~ 207 (357)
T 4g56_B 129 LVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL 207 (357)
T ss_dssp CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEE
T ss_pred EEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceE
Confidence 1223345899999999999955 78999999999999999875421 2467888999999
Q ss_pred EEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--EeecCceEEEEEcCCC-CEEE
Q psy9316 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IATKGENINITWAPNG-NTIA 222 (264)
Q Consensus 146 i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g-~~la 222 (264)
+|+++...... ...+..|...+.+++|+|.++.+|++|+.|+.|++||+++.+... ..+...+.+++|+|++ ++||
T Consensus 208 ~wd~~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la 286 (357)
T 4g56_B 208 LWDTRKPKPAT-RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLA 286 (357)
T ss_dssp ECCTTSSSCBC-BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEE
T ss_pred EEECCCCceee-eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEE
Confidence 99987544322 123345677899999999888899999999999999999887532 2345678999999987 5899
Q ss_pred EeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 223 VGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 223 ~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
+|+.|+.|++||++.+.. ....+|...|++|
T Consensus 287 sgs~D~~i~iwd~~~~~~-----~~~~~H~~~V~~v 317 (357)
T 4g56_B 287 SISEDCTVAVLDADFSEV-----FRDLSHRDFVTGV 317 (357)
T ss_dssp EEETTSCEEEECTTSCEE-----EEECCCSSCEEEE
T ss_pred EEeCCCEEEEEECCCCcE-----eEECCCCCCEEEE
Confidence 999999999999876433 2346888888876
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-29 Score=216.04 Aligned_cols=235 Identities=19% Similarity=0.271 Sum_probs=187.1
Q ss_pred CceEeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCC---Ccc
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD---LNK 88 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~---~~~ 88 (264)
.-..+.|.+. .+++++.|+.+++|+. .+..+.+..|...|.+++|+|++++|++|+.|+.+++|++..... ...
T Consensus 68 ~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~ 146 (354)
T 2pbi_B 68 LCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK 146 (354)
T ss_dssp EEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGG
T ss_pred EEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccccc
Confidence 3346667664 5678999999999975 455667788999999999999999999999999999999864321 122
Q ss_pred cEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc---------------------ceEEEeecCCCcEEEE
Q psy9316 89 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---------------------QIMLASGSFDKSVAIF 147 (264)
Q Consensus 89 ~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---------------------~~~~~~~~~d~~i~i~ 147 (264)
...+..|...|.+++|+|++ ..+++++.|++|++||+++++. ...+++|+.|+.|.+|
T Consensus 147 ~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 147 KKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp CEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred ceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 34567899999999999855 6888999999999999987542 1267889999999999
Q ss_pred EeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee-c---CceEEEEEcCCCCEEEE
Q psy9316 148 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT-K---GENINITWAPNGNTIAV 223 (264)
Q Consensus 148 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~-~---~~~~~v~~sp~g~~la~ 223 (264)
+++.... ...+.+|...|.+++|+|+ +.+|++++.|++|++||+++........ . ..+.+++|+|+|++|++
T Consensus 226 d~~~~~~---~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 226 DMRSGQC---VQAFETHESDVNSVRYYPS-GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp ETTTCCE---EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred ECCCCcE---EEEecCCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence 9875432 3356789999999999985 5789999999999999999876432222 1 24678999999999999
Q ss_pred eeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 224 GNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 224 gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
|+.|+.|++||+.++. ...++.||...+.+|
T Consensus 302 g~~d~~i~vwd~~~~~----~~~~l~~h~~~v~~l 332 (354)
T 2pbi_B 302 GYNDYTINVWDVLKGS----RVSILFGHENRVSTL 332 (354)
T ss_dssp EETTSCEEEEETTTCS----EEEEECCCSSCEEEE
T ss_pred EECCCcEEEEECCCCc----eEEEEECCCCcEEEE
Confidence 9999999999986543 334577888887765
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-29 Score=212.44 Aligned_cols=211 Identities=18% Similarity=0.289 Sum_probs=174.2
Q ss_pred EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG 94 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~ 94 (264)
.+.|.+ ...++++.|+.+++|+. .+.++.+..|...+.+++|+|++++|++|+.|+.|++|++.... ....+..
T Consensus 87 ~~~~~~-~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~---~~~~~~~ 162 (321)
T 3ow8_A 87 DISHTL-PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK---KEYSLDT 162 (321)
T ss_dssp EECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS---EEEEEEC
T ss_pred EECCCC-CEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc---eeEEecC
Confidence 344444 35678999999999975 45677788899999999999999999999999999999986432 2345677
Q ss_pred ccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEeccCCCc
Q psy9316 95 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFALDKKGDL 155 (264)
Q Consensus 95 h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~~~ 155 (264)
|...|.+++|+|++ .++++++.||.|++||+++++. ...+++++.|+.|++|+++...
T Consensus 163 ~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~-- 239 (321)
T 3ow8_A 163 RGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-- 239 (321)
T ss_dssp SSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC--
T ss_pred CCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc--
Confidence 88899999999955 7899999999999999987542 1257899999999999986532
Q ss_pred cceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE--eecCceEEEEEcCCCCEEEEeeCCCeEEEE
Q psy9316 156 NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII--ATKGENINITWAPNGNTIAVGNKEDLVTFI 233 (264)
Q Consensus 156 ~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~--~~~~~~~~v~~sp~g~~la~gs~d~~i~~~ 233 (264)
....+.+|...|.+++|+|+ +.+|++++.||+|++||+++++.... .+.+.+.+++|+|+|++|++++.|+.|++|
T Consensus 240 -~~~~~~~h~~~v~~~~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 240 -LAGTLSGHASWVLNVAFCPD-DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp -EEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred -eeEEEcCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 23456789999999999985 56899999999999999998875332 345678999999999999999999999999
Q ss_pred Ecc
Q psy9316 234 DVV 236 (264)
Q Consensus 234 d~~ 236 (264)
|+.
T Consensus 318 d~p 320 (321)
T 3ow8_A 318 DCP 320 (321)
T ss_dssp ECC
T ss_pred eCC
Confidence 963
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-29 Score=209.76 Aligned_cols=192 Identities=20% Similarity=0.351 Sum_probs=155.8
Q ss_pred cccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecC-CCCeEEEEeCCCcEEE
Q psy9316 45 KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT-NPDLLSTASGDKTVRI 123 (264)
Q Consensus 45 ~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~~l~s~s~dg~i~v 123 (264)
..+.+|.+.|.+++|+|+|++|++|+.|++|++|++... .......+.+|.+.|.+++|++. ++.+|++++.||+|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~-~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS-CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC-CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 356799999999999999999999999999999998642 22233567899999999999753 4579999999999999
Q ss_pred EECCCCCc-----------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCC---
Q psy9316 124 WDARTQKS-----------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN--- 177 (264)
Q Consensus 124 wd~~~~~~-----------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~--- 177 (264)
||+++++. ...+++++.|+.|++|+++...... ...+.+|...|.+++|+|..
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~-~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-CEEEECCSSCEEEEEECCCC---
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-eeeeecccCccceEeecCCcccc
Confidence 99976420 1357889999999999987543221 24567899999999999863
Q ss_pred ---------CCEEEEEeCCCcEEEEeCCCCcc------eeEeecCceEEEEEcCCC---CEEEEeeCCCeEEEEEcccC
Q psy9316 178 ---------PDLLSTASGDKTVRIWDARTQKS------QIIATKGENINITWAPNG---NTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 178 ---------~~~i~s~~~dg~i~iwD~~t~~~------~~~~~~~~~~~v~~sp~g---~~la~gs~d~~i~~~d~~~~ 238 (264)
+.+|++++.|++|++||+++... .+..+...+.+++|+|++ ++||+|+.|+.|++||++..
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 46899999999999999987652 112245668999999985 89999999999999998763
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=216.11 Aligned_cols=193 Identities=25% Similarity=0.405 Sum_probs=156.6
Q ss_pred cccccccCCC-CEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcE
Q psy9316 43 DIKEYQAHGS-KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 121 (264)
Q Consensus 43 ~~~~~~~h~~-~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i 121 (264)
.+.++.+|.+ .|.+++|+|+|++|++|+.|++|++|++.............+|...|.+++|+|++ .+|++++.|+.+
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v 85 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDATT 85 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC-CEEEEEECCCcE
Confidence 4567789987 99999999999999999999999999986432111112236899999999999954 789999999999
Q ss_pred EEEECCCCCc---------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCE
Q psy9316 122 RIWDARTQKS---------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDL 180 (264)
Q Consensus 122 ~vwd~~~~~~---------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~ 180 (264)
++||++.... ...+++++.|+.|.+|+++..........+.+|...|.+++|+|+ +.+
T Consensus 86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~ 164 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS-QEL 164 (345)
T ss_dssp EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS-SSC
T ss_pred EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC-CCE
Confidence 9999876421 125789999999999999765444334456789999999999985 468
Q ss_pred EEEEeCCCcEEEEeCCCCcce----eEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 181 LSTASGDKTVRIWDARTQKSQ----IIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 181 i~s~~~dg~i~iwD~~t~~~~----~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
|++++.|+.|++||.++.... ...+...+.+++|+|+|++|++|+.|+.|++||...
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence 899999999999999876522 223456789999999999999999999999999754
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-29 Score=212.92 Aligned_cols=219 Identities=25% Similarity=0.404 Sum_probs=161.9
Q ss_pred ceEeecCCCeeEEEeecCceEEecccc---------ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCC
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTH---------NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD 85 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~---------~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~ 85 (264)
...+.|.+. ++++++.|+.+++|+.. +.+..+.+|.+.|.+++|+|++++|++|+.|++|++|++...+.
T Consensus 63 ~v~~sp~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~ 141 (330)
T 2hes_X 63 SVAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE 141 (330)
T ss_dssp EEEECTTSS-EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC
T ss_pred EEEECCCCC-EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC
Confidence 346677664 56789999999999752 34566889999999999999999999999999999999853322
Q ss_pred -CcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC--c---------------------ceEEEeecCC
Q psy9316 86 -LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--S---------------------QIMLASGSFD 141 (264)
Q Consensus 86 -~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~---------------------~~~~~~~~~d 141 (264)
......+.+|...|.+++|+|++ .+|++++.|++|++||.+.+. . ...+++++.|
T Consensus 142 ~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D 220 (330)
T 2hes_X 142 EYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD 220 (330)
T ss_dssp CCEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT
T ss_pred CeEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC
Confidence 22334577899999999999954 789999999999999976431 0 2257899999
Q ss_pred CcEEEEEeccCCCc-----cceEEEec-cccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--E---eecC-ce
Q psy9316 142 KSVAIFALDKKGDL-----NKEVVYRG-HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--I---ATKG-EN 209 (264)
Q Consensus 142 ~~i~i~~~~~~~~~-----~~~~~~~~-h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~---~~~~-~~ 209 (264)
+.|++|+++..... .....+.. |...|.+++|++. .+|++++.||.|++||..+++... . .+.. .+
T Consensus 221 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v 298 (330)
T 2hes_X 221 STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN--GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEI 298 (330)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT--SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCE
T ss_pred CeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC--CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceE
Confidence 99999998643211 11112333 8889999999853 478999999999999998764211 1 1233 67
Q ss_pred EEEEEcC--CCCEEEEeeCCCeEEEEEccc
Q psy9316 210 INITWAP--NGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 210 ~~v~~sp--~g~~la~gs~d~~i~~~d~~~ 237 (264)
.+++|+| ++++|++|+.|+.|++||+.+
T Consensus 299 ~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 299 NVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 8899999 789999999999999999754
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=208.72 Aligned_cols=234 Identities=21% Similarity=0.333 Sum_probs=180.0
Q ss_pred ceEeecCCCCCceEeecCCCeeEEEeecCceEEecccc------ccccccccCCCCEEEEEECC--CCCeEEEEECCCcE
Q psy9316 4 PVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTH------NDIKEYQAHGSKVHSVAWSC--DGRRLASGSFDKSV 75 (264)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~~~~~h~~~V~~l~~s~--~g~~l~s~s~dg~i 75 (264)
+.+..|........+.|.+. ++++++.|+.+++|+.. .....+.+|.+.|.+++|+| ++++|++|+.||.|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 34444544445567778765 56788999999999764 24566789999999999999 69999999999999
Q ss_pred EEEEeccCCCC------cccEEEecccccEEeEEEecCC-CCeEEEEeCCCcEEEEECCCCCc-----------------
Q psy9316 76 AIFALDKKGDL------NKEVVYRGHTGSVDQLCWHATN-PDLLSTASGDKTVRIWDARTQKS----------------- 131 (264)
Q Consensus 76 ~v~~~~~~~~~------~~~~~~~~h~~~v~~i~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~----------------- 131 (264)
++|++...... .....+..|...|.+++|+|.. +.++++++.||.|++||+++.+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999753211 2234567899999999999862 57899999999999999876541
Q ss_pred ------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCC---CEEEEEeCCCcE
Q psy9316 132 ------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP---DLLSTASGDKTV 190 (264)
Q Consensus 132 ------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~---~~i~s~~~dg~i 190 (264)
...+++++.++.+.+|+.. .+.......+.+|...|.+++|+|+++ .+|++++.||.|
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i 242 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK-DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI 242 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT-TSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC-CCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence 3467788888888555543 333333445678999999999999753 689999999999
Q ss_pred EEEeCCCCcc---------------------------------------------eeE---eecCceEEEEEcCCCCEEE
Q psy9316 191 RIWDARTQKS---------------------------------------------QII---ATKGENINITWAPNGNTIA 222 (264)
Q Consensus 191 ~iwD~~t~~~---------------------------------------------~~~---~~~~~~~~v~~sp~g~~la 222 (264)
++||+++... ... .+...+.+++|+|++++|+
T Consensus 243 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 322 (351)
T 3f3f_A 243 RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS 322 (351)
T ss_dssp EEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE
T ss_pred EEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE
Confidence 9999986420 111 1335688999999999999
Q ss_pred EeeCCCeEEEEEcccCC
Q psy9316 223 VGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 223 ~gs~d~~i~~~d~~~~~ 239 (264)
+|+.|+.|++||+..+.
T Consensus 323 s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 323 SAGDDGKVRLWKATYSN 339 (351)
T ss_dssp EEETTSCEEEEEECTTS
T ss_pred EecCCCcEEEEecCcCc
Confidence 99999999999987543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=210.80 Aligned_cols=228 Identities=27% Similarity=0.411 Sum_probs=166.5
Q ss_pred eecCCCCCceEeecCCCeeEEEeecCceEEeccccc----ccccc-cc-CCCCEEEEEECCCCCeEEEEECCCcEEEEEe
Q psy9316 7 QFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHN----DIKEY-QA-HGSKVHSVAWSCDGRRLASGSFDKSVAIFAL 80 (264)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~-~~-h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~ 80 (264)
.|.++..+-..+-.++. ++++++.|+.+++|+... .+..+ .+ |.+.|.+++|+|++++|++|+.|++|++|++
T Consensus 9 ~~~~h~~~v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~ 87 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK 87 (330)
T ss_dssp EEECCSSCEEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred eeccCCCceeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Confidence 34444444444444444 667899999999997643 33444 34 9999999999999999999999999999998
Q ss_pred ccCC----CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC-C----------------------cce
Q psy9316 81 DKKG----DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ-K----------------------SQI 133 (264)
Q Consensus 81 ~~~~----~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~-~----------------------~~~ 133 (264)
.... .......+.+|...|.+++|+|++ .+|++++.|++|++||++.. . ...
T Consensus 88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 166 (330)
T 2hes_X 88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA 166 (330)
T ss_dssp -------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS
T ss_pred ccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC
Confidence 5321 122234577899999999999954 78999999999999999431 1 012
Q ss_pred EEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCC-CCEEEEEeCCCcEEEEeCCCCc--------ceeE-
Q psy9316 134 MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN-PDLLSTASGDKTVRIWDARTQK--------SQII- 203 (264)
Q Consensus 134 ~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~-~~~i~s~~~dg~i~iwD~~t~~--------~~~~- 203 (264)
.+++++.|+.|++|+..... ......+.+|...|.++.|+|+. ..+|++++.|++|++||+++.. ....
T Consensus 167 ~l~s~s~D~~i~iW~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 245 (330)
T 2hes_X 167 LLASSSYDDTVRIWKDYDDD-WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL 245 (330)
T ss_dssp EEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCC-eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeec
Confidence 57899999999999975421 12234567899999999999864 4579999999999999997542 1111
Q ss_pred --eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 204 --ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 204 --~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
.+...+.+++|+|++ +|++|+.|+.|++||+..+
T Consensus 246 ~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 246 PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 134568899999765 8899999999999998643
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=223.96 Aligned_cols=190 Identities=19% Similarity=0.271 Sum_probs=155.4
Q ss_pred ccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEE
Q psy9316 46 EYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vw 124 (264)
...+|...|+||+|+| ++++|++|+.||+|++||+..... .....+.+|.+.|.+++|+|.++++|++++.||+|++|
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 3457888999999999 678999999999999999865332 22233568999999999999888899999999999999
Q ss_pred ECCCCCc---------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEE
Q psy9316 125 DARTQKS---------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST 183 (264)
Q Consensus 125 d~~~~~~---------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s 183 (264)
|++++.. ...+++|+.|+.|.+|+++.. ....+.+|...|.+++|+|.+..++++
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~----~~~~~~~h~~~v~~v~~~p~~~~~~~s 268 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK----ELWNLRMHKKKVTHVALNPCCDWFLAT 268 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC----BCCCSBCCSSCEEEEEECTTCSSEEEE
T ss_pred eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc----eeEEEecccceEEeeeecCCCceEEEE
Confidence 9976421 125788999999999998532 122457899999999999988889999
Q ss_pred EeCCCcEEEEeCCCCccee-----EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 184 ASGDKTVRIWDARTQKSQI-----IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 184 ~~~dg~i~iwD~~t~~~~~-----~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
++.|+.|++||+++..... ..+...+.+++|+|+|++|++|+.|+.|++||++.+..
T Consensus 269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence 9999999999998765311 23456788999999999999999999999999886443
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-28 Score=225.42 Aligned_cols=237 Identities=19% Similarity=0.314 Sum_probs=176.9
Q ss_pred ceEeecCCCeeEEEeecCceEEeccc--cccccccc-------cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCC
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQ-------AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD 85 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~-------~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~ 85 (264)
...+.|.+. ++++++.|+.+++|+. .+.+..+. +|.+.|.+++|+|++++|++++.|++|++||+.....
T Consensus 195 ~v~fspdg~-~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 195 SVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp EEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEECCCCC-EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 446777664 5678999999999975 34455553 7999999999999999999999999999999864211
Q ss_pred Cc----------------------------------------ccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEE
Q psy9316 86 LN----------------------------------------KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125 (264)
Q Consensus 86 ~~----------------------------------------~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd 125 (264)
.. ....+.+|...|.+++|+|++ ++|++++.|++|++||
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd 352 (611)
T 1nr0_A 274 EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWD 352 (611)
T ss_dssp EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEE
T ss_pred eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEE
Confidence 00 012345799999999999954 7899999999999999
Q ss_pred CCCCCc--------------------------------------------------------------------------
Q psy9316 126 ARTQKS-------------------------------------------------------------------------- 131 (264)
Q Consensus 126 ~~~~~~-------------------------------------------------------------------------- 131 (264)
+++++.
T Consensus 353 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~ 432 (611)
T 1nr0_A 353 ISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 432 (611)
T ss_dssp TTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS
T ss_pred CCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCc
Confidence 865321
Q ss_pred ---------------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEE
Q psy9316 132 ---------------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA 184 (264)
Q Consensus 132 ---------------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~ 184 (264)
...+++|+.|+.|++|++.... ...... .+|...|.+++|+|+ +.+|+++
T Consensus 433 ~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~-~~~~~~-~~h~~~v~~v~fspd-g~~las~ 509 (611)
T 1nr0_A 433 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-VSEVKT-IVHPAEITSVAFSNN-GAFLVAT 509 (611)
T ss_dssp EEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-EEEEEE-EECSSCEEEEEECTT-SSEEEEE
T ss_pred eEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc-eeeeec-cCCCCceEEEEECCC-CCEEEEE
Confidence 0135667777888888875321 111122 578899999999985 5789999
Q ss_pred eCCCcEEEEeCCC-Cccee---E-eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCccc-ceeeeee
Q psy9316 185 SGDKTVRIWDART-QKSQI---I-ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGH-LMETRSL 258 (264)
Q Consensus 185 ~~dg~i~iwD~~t-~~~~~---~-~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h-~~~~~~~ 258 (264)
+.|++|++||+.+ .+... . .+...+.+++|+|+|++||+|+.|+.|++||+..+.... ...+.|| ...+.+|
T Consensus 510 s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~--~~~~~~h~~~~v~~v 587 (611)
T 1nr0_A 510 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP--IIIKGAHAMSSVNSV 587 (611)
T ss_dssp ETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC--EEETTSSTTSCEEEE
T ss_pred cCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccccc--chhhccCcccCeeEE
Confidence 9999999999987 43211 1 256678999999999999999999999999987643211 1346688 6666654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-27 Score=207.89 Aligned_cols=214 Identities=16% Similarity=0.261 Sum_probs=170.4
Q ss_pred CCceEeecCCCeeEEEeecCceEEecccc--------ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCC
Q psy9316 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTH--------NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG 84 (264)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~ 84 (264)
.-...+.|.+. ..++++.|+.+++|... .....+.+|.+.|.+++|+|++++|++++.|++|++||+....
T Consensus 109 v~~~~~sp~g~-~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~ 187 (354)
T 2pbi_B 109 VMACAYAPSGC-AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187 (354)
T ss_dssp CCEEEECTTSS-EEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEECCCCC-EEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe
Confidence 34456777775 45678999999998542 2345677899999999999999999999999999999986532
Q ss_pred CCcccEEEecccccEEeEEEecCC-CCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcE
Q psy9316 85 DLNKEVVYRGHTGSVDQLCWHATN-PDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSV 144 (264)
Q Consensus 85 ~~~~~~~~~~h~~~v~~i~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i 144 (264)
....+.+|...|.+++|+|.. ++++++|+.||.|++||+++++. ...+++++.|+.|
T Consensus 188 ---~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v 264 (354)
T 2pbi_B 188 ---LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATC 264 (354)
T ss_dssp ---EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ---EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeE
Confidence 234578999999999998753 47999999999999999987542 1257899999999
Q ss_pred EEEEeccCCCccceEEEe--ccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--EeecCceEEEEEcCCCCE
Q psy9316 145 AIFALDKKGDLNKEVVYR--GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IATKGENINITWAPNGNT 220 (264)
Q Consensus 145 ~i~~~~~~~~~~~~~~~~--~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~ 220 (264)
++|+++..... ..+. .+...+.+++|+|+ +.++++++.|+.|++||+.+++... ..+.+.+.+++|+|+|++
T Consensus 265 ~lwd~~~~~~~---~~~~~~~~~~~~~~~~~s~~-g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~ 340 (354)
T 2pbi_B 265 RLYDLRADREV---AIYSKESIIFGASSVDFSLS-GRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTA 340 (354)
T ss_dssp EEEETTTTEEE---EEECCTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSC
T ss_pred EEEECCCCcEE---EEEcCCCcccceeEEEEeCC-CCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCE
Confidence 99998653221 1222 23347889999985 5789999999999999998876432 235667899999999999
Q ss_pred EEEeeCCCeEEEEE
Q psy9316 221 IAVGNKEDLVTFID 234 (264)
Q Consensus 221 la~gs~d~~i~~~d 234 (264)
|++|+.|+.|++|+
T Consensus 341 l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 341 FCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEETTSEEEEEC
T ss_pred EEEEcCCCCEEecC
Confidence 99999999999996
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=213.29 Aligned_cols=191 Identities=24% Similarity=0.400 Sum_probs=147.6
Q ss_pred ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecC-CCCeEEEEeCCCcEEEE
Q psy9316 46 EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT-NPDLLSTASGDKTVRIW 124 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~~l~s~s~dg~i~vw 124 (264)
.+.+|.+.|.+++|+|+|++|++|+.|++|++||+.... ......+.+|.+.|.+++|++. ++.+|++++.|++|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 356899999999999999999999999999999986422 1223457899999999999753 45789999999999999
Q ss_pred ECCCCCc-----------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCC----
Q psy9316 125 DARTQKS-----------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN---- 177 (264)
Q Consensus 125 d~~~~~~-----------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~---- 177 (264)
|+++++. ...+++++.|+.|++|+++..........+.+|...|.++.|+|..
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 9976421 1257889999999999987543322122346788899999999863
Q ss_pred ------------CCEEEEEeCCCcEEEEeCCCCcc-----eeEeecCceEEEEEcCCC----CEEEEeeCCCeEEEEEcc
Q psy9316 178 ------------PDLLSTASGDKTVRIWDARTQKS-----QIIATKGENINITWAPNG----NTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 178 ------------~~~i~s~~~dg~i~iwD~~t~~~-----~~~~~~~~~~~v~~sp~g----~~la~gs~d~~i~~~d~~ 236 (264)
..+|++++.|++|++||++.... .+..+...+.+++|+|++ ++|++|+.|+.|++||+.
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 35899999999999999975421 122345668999999987 899999999999999987
Q ss_pred c
Q psy9316 237 K 237 (264)
Q Consensus 237 ~ 237 (264)
.
T Consensus 247 ~ 247 (316)
T 3bg1_A 247 D 247 (316)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=210.88 Aligned_cols=233 Identities=24% Similarity=0.372 Sum_probs=171.8
Q ss_pred ceEeecCCCeeEEEeecCceEEeccc--cccccccccCC------------------CCEEEEEECCCCCeEEEEECCCc
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHG------------------SKVHSVAWSCDGRRLASGSFDKS 74 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~------------------~~V~~l~~s~~g~~l~s~s~dg~ 74 (264)
...+.|.|.. ++++ .++.+++|+. .+.+..+..|. ..|.+++|+|++++|++|+.|+.
T Consensus 69 ~v~fspdg~~-la~g-~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~ 146 (393)
T 1erj_A 69 CVKFSNDGEY-LATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 146 (393)
T ss_dssp EEEECTTSSE-EEEE-CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred EEEECCCCCE-EEEE-cCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCe
Confidence 3466676653 3343 3677888764 34444444442 24999999999999999999999
Q ss_pred EEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEE
Q psy9316 75 VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIML 135 (264)
Q Consensus 75 i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~ 135 (264)
|++||+... .....+.+|...|.+++|+|++ .++++++.|++|++||+++++. ...+
T Consensus 147 i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (393)
T 1erj_A 147 IRIWDIENR---KIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 222 (393)
T ss_dssp EEEEETTTT---EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEE
T ss_pred EEEEECCCC---cEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEE
Confidence 999998642 2334578999999999999965 6889999999999999987542 2367
Q ss_pred EeecCCCcEEEEEeccCCCccce----EEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc-----------
Q psy9316 136 ASGSFDKSVAIFALDKKGDLNKE----VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS----------- 200 (264)
Q Consensus 136 ~~~~~d~~i~i~~~~~~~~~~~~----~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~----------- 200 (264)
++++.|+.|++|+++........ ....+|...|.+++|+|+ +.+|++++.||.|++||+++...
T Consensus 223 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~ 301 (393)
T 1erj_A 223 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301 (393)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEEC---------------C
T ss_pred EEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC-CCEEEEEeCCCEEEEEECCCCCCcccccCCCCCc
Confidence 88999999999998653321111 112578899999999985 57889999999999999986421
Q ss_pred ---eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 201 ---QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 201 ---~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
....+...+.+++|+|++++|++|+.|+.|++||+..+.. ...+.||...+.+|
T Consensus 302 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~----~~~l~~h~~~v~~v 358 (393)
T 1erj_A 302 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP----LLMLQGHRNSVISV 358 (393)
T ss_dssp EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEE
T ss_pred ceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE----EEEECCCCCCEEEE
Confidence 1122345688999999999999999999999999876433 34567888777665
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-28 Score=207.91 Aligned_cols=210 Identities=19% Similarity=0.363 Sum_probs=167.4
Q ss_pred ceEeecCCCeeEEEeecCceEEeccccc------cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcc
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTHN------DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK 88 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~ 88 (264)
...+.|.+. +.++++.|+.+++|+... ..+.+.+|.+.|.++.|++++. |++++.|++|++||+... ..
T Consensus 102 ~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~---~~ 176 (340)
T 1got_B 102 TCAYAPSGN-YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG---QQ 176 (340)
T ss_dssp EEEECTTSS-EEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT---EE
T ss_pred EEEECCCCC-EEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC---cE
Confidence 345666664 567889999999997542 3456789999999999998765 889999999999998642 23
Q ss_pred cEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEe
Q psy9316 89 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFAL 149 (264)
Q Consensus 89 ~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~ 149 (264)
...+.+|...|.+++|+|++ .++++|+.||.|++||++++.. ...+++++.|+.|++|++
T Consensus 177 ~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~ 255 (340)
T 1got_B 177 TTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255 (340)
T ss_dssp EEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 34577899999999999954 7899999999999999987542 125789999999999998
Q ss_pred ccCCCccceEEEe--ccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce--eEeecCceEEEEEcCCCCEEEEee
Q psy9316 150 DKKGDLNKEVVYR--GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--IIATKGENINITWAPNGNTIAVGN 225 (264)
Q Consensus 150 ~~~~~~~~~~~~~--~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~--~~~~~~~~~~v~~sp~g~~la~gs 225 (264)
+..... ..+. .+...|.+++|+|+ +.++++|+.||.|++||+.+.+.. ...+.+.+.+++|+|+|.+|++|+
T Consensus 256 ~~~~~~---~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 256 RADQEL---MTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp TTTEEE---EEECCTTCCSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred CCCcEE---EEEccCCcccceEEEEECCC-CCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEc
Confidence 653221 1221 23357999999985 578999999999999999887642 334567789999999999999999
Q ss_pred CCCeEEEEE
Q psy9316 226 KEDLVTFID 234 (264)
Q Consensus 226 ~d~~i~~~d 234 (264)
.|+.|++||
T Consensus 332 ~D~~i~iWd 340 (340)
T 1got_B 332 WDSFLKIWN 340 (340)
T ss_dssp TTSCEEEEC
T ss_pred CCccEEecC
Confidence 999999996
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=206.44 Aligned_cols=223 Identities=23% Similarity=0.357 Sum_probs=179.0
Q ss_pred CCceEeecCCCeeEEEeecCceEEecccc----ccccccccCCCCEEEEEECCC--CCeEEEEECCCcEEEEEeccCCCC
Q psy9316 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTH----NDIKEYQAHGSKVHSVAWSCD--GRRLASGSFDKSVAIFALDKKGDL 86 (264)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~h~~~V~~l~~s~~--g~~l~s~s~dg~i~v~~~~~~~~~ 86 (264)
.....+.|.+. .+++++.|+.+++|+.. ..+..+.+|.+.|.+++|+++ +++|++|+.||.|++|++... ..
T Consensus 14 v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~ 91 (379)
T 3jrp_A 14 IHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-RW 91 (379)
T ss_dssp EEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT-EE
T ss_pred EEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC-ce
Confidence 34446777765 56788899999999753 456678899999999999987 999999999999999998753 22
Q ss_pred cccEEEecccccEEeEEEecCC-CCeEEEEeCCCcEEEEECCCCC----------------------------------c
Q psy9316 87 NKEVVYRGHTGSVDQLCWHATN-PDLLSTASGDKTVRIWDARTQK----------------------------------S 131 (264)
Q Consensus 87 ~~~~~~~~h~~~v~~i~~~~~~-~~~l~s~s~dg~i~vwd~~~~~----------------------------------~ 131 (264)
.....+..|...|.+++|+|.. +.++++++.||.|++||++... .
T Consensus 92 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T 3jrp_A 92 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 171 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CT
T ss_pred eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCC
Confidence 2334566799999999999963 5789999999999999997652 1
Q ss_pred ceEEEeecCCCcEEEEEeccCCCcc-ceEEEeccccceeeEEEcCCC--CCEEEEEeCCCcEEEEeCCCCcc----eeE-
Q psy9316 132 QIMLASGSFDKSVAIFALDKKGDLN-KEVVYRGHTGSVDQLCWHATN--PDLLSTASGDKTVRIWDARTQKS----QII- 203 (264)
Q Consensus 132 ~~~~~~~~~d~~i~i~~~~~~~~~~-~~~~~~~h~~~i~~i~~~~~~--~~~i~s~~~dg~i~iwD~~t~~~----~~~- 203 (264)
...+++++.|+.|.+|+++...... ....+.+|...|.+++|+|++ +.+|++++.||.|++||+++... ...
T Consensus 172 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 251 (379)
T 3jrp_A 172 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK 251 (379)
T ss_dssp TCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS
T ss_pred CCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeec
Confidence 2457888999999999997654332 223567899999999999974 68999999999999999998642 111
Q ss_pred --eecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 204 --ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 204 --~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.+...+.+++|+|+|++|++++.|+.|++||+..
T Consensus 252 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 252 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred cccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 1345688999999999999999999999999874
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=208.91 Aligned_cols=214 Identities=15% Similarity=0.227 Sum_probs=169.5
Q ss_pred cCCCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccc
Q psy9316 20 PSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 97 (264)
Q Consensus 20 ~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~ 97 (264)
+.++..+++++.|+.+++|+.. .....+.+|.+.|.+++|+|++++|++|+.|+.|++|++.... ....+.+|..
T Consensus 106 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~h~~ 182 (420)
T 3vl1_A 106 KLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS---NPRTLIGHRA 182 (420)
T ss_dssp CSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---CCEEEECCSS
T ss_pred ecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc---CceEEcCCCC
Confidence 3344566788999999999754 4556678999999999999999999999999999999987533 2345778999
Q ss_pred cEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------------------------------ceE
Q psy9316 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------------------------------QIM 134 (264)
Q Consensus 98 ~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------------------------------~~~ 134 (264)
.|.+++|+|++ .++++++.||.|++||+++++. ...
T Consensus 183 ~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 183 TVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp CEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE
T ss_pred cEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE
Confidence 99999999954 7888999999999999986431 126
Q ss_pred EEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc---eeEeecC-ceE
Q psy9316 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---QIIATKG-ENI 210 (264)
Q Consensus 135 ~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~---~~~~~~~-~~~ 210 (264)
+++++.|+.|.+|+++..... ......|...|.+++|+|++..+|++++.||.|++||+++... ....+.. .+.
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 339 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQT--IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPIN 339 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEE--EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEE
T ss_pred EEEEcCCCeEEEEECCCCcee--EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCce
Confidence 788999999999998654322 1223467889999999997766999999999999999998753 2222233 455
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 211 NITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 211 ~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
.+ +.|++++|++++.|+.|++||+.....
T Consensus 340 ~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 340 NV-YFAAGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp EE-EEETTEEEEEETTTEEEEEEEECCTTC
T ss_pred EE-EeCCCCEEEEecCCccEEEEeccCCCC
Confidence 55 556889999999999999999987433
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=204.14 Aligned_cols=190 Identities=24% Similarity=0.329 Sum_probs=155.7
Q ss_pred ccccccCCCCEEEEEECCCC-CeEEEEECCCcEEEEEeccCCCC--cccEEEecccccEEeEEEecCCCCeEEEEeCCCc
Q psy9316 44 IKEYQAHGSKVHSVAWSCDG-RRLASGSFDKSVAIFALDKKGDL--NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 120 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g-~~l~s~s~dg~i~v~~~~~~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~ 120 (264)
..++.+|.+.|.+++|+|++ ++|++|+.|++|++|++...... .....+.+|...|.+++|+|++ .++++++.|++
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~ 88 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKT 88 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeCCCE
Confidence 44678999999999999965 89999999999999998643221 1234578999999999999854 78999999999
Q ss_pred EEEEECCCCCc-------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCC----
Q psy9316 121 VRIWDARTQKS-------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN---- 177 (264)
Q Consensus 121 i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~---- 177 (264)
|++||+++++. ...+++++.|+.|++|+++. .....+.+|...|..+.|+|..
T Consensus 89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG----QCLATLLGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS----CEEEEECCCSSCEEEEEECCC-----
T ss_pred EEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeEEEEeccCCcEEEEEEccCCCCCC
Confidence 99999987642 12578999999999999852 1234567899999999999853
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCccee--EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 178 -PDLLSTASGDKTVRIWDARTQKSQI--IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 178 -~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
...+++++.|+.|++||+++.+... ..+...+.+++|+|+|++|++|+.|+.|++||+..+
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred CccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 3489999999999999999876432 235567899999999999999999999999998764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-27 Score=203.36 Aligned_cols=227 Identities=17% Similarity=0.249 Sum_probs=178.3
Q ss_pred EeecCCCCCceEeecCCCeeEEEeecCceEEeccccc----cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEec
Q psy9316 6 IQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHN----DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALD 81 (264)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~ 81 (264)
+.+|........+.|.+. +.++++.|+.+++|+... .+..+.+|.+.|.+++|+|++++|++++.|+.|++|++.
T Consensus 4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 345544455567778775 566788899999997643 567888999999999999999999999999999999986
Q ss_pred cCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-----------------------ceEEEee
Q psy9316 82 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-----------------------QIMLASG 138 (264)
Q Consensus 82 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-----------------------~~~~~~~ 138 (264)
.. .......+..|...|.+++|+|++ .++++++.||.+++||++.... ...++++
T Consensus 83 ~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 160 (372)
T 1k8k_C 83 GR-TWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 160 (372)
T ss_dssp TT-EEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred CC-eeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEE
Confidence 42 222223345788999999999855 7899999999999999876431 1257888
Q ss_pred cCCCcEEEEEeccCC---------------CccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE
Q psy9316 139 SFDKSVAIFALDKKG---------------DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII 203 (264)
Q Consensus 139 ~~d~~i~i~~~~~~~---------------~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~ 203 (264)
+.|+.+.+|+++... .......+..|...|.+++|+|+ +.+|++++.||.|++||+++.+....
T Consensus 161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~ 239 (372)
T 1k8k_C 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN-GSRVAWVSHDSTVCLADADKKMAVAT 239 (372)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS-SSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC-CCEEEEEeCCCEEEEEECCCCceeEE
Confidence 999999999974211 11122345688899999999985 46889999999999999998875332
Q ss_pred --eecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 204 --ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 204 --~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.+...+.+++|+|++++|++| .|+.+++||++.
T Consensus 240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 334568899999999999988 899999999987
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=219.92 Aligned_cols=214 Identities=21% Similarity=0.335 Sum_probs=167.3
Q ss_pred EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG 94 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~ 94 (264)
.+.|.|.. ++++. ++.+++|+. .+....|.+|.+.|.+++|+|+|++|++|+.|++|++||+.... ......+.+
T Consensus 25 ~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~-~~~~~~~~~ 101 (611)
T 1nr0_A 25 GNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT-HILKTTIPV 101 (611)
T ss_dssp EECTTSSE-EEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT-CCEEEEEEC
T ss_pred eeCCCCCE-EEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc-ceeeEeecc
Confidence 45565543 34444 568888865 45677899999999999999999999999999999999985422 222235678
Q ss_pred ccccEEeEEEecCCCCeEEEEeCC----CcEEEEECCCCC------------------cceEEEeecCCCcEEEEEeccC
Q psy9316 95 HTGSVDQLCWHATNPDLLSTASGD----KTVRIWDARTQK------------------SQIMLASGSFDKSVAIFALDKK 152 (264)
Q Consensus 95 h~~~v~~i~~~~~~~~~l~s~s~d----g~i~vwd~~~~~------------------~~~~~~~~~~d~~i~i~~~~~~ 152 (264)
|.+.|.+++|+|++ .++++++.+ +.|++||..... ....+++++.|+++++|+....
T Consensus 102 ~~~~v~~v~fs~dg-~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~ 180 (611)
T 1nr0_A 102 FSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 180 (611)
T ss_dssp SSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred cCCceEEEEECCCC-CEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence 99999999999966 566666654 478899853211 0125899999999999996432
Q ss_pred CCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE---------eecCceEEEEEcCCCCEEEE
Q psy9316 153 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII---------ATKGENINITWAPNGNTIAV 223 (264)
Q Consensus 153 ~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~---------~~~~~~~~v~~sp~g~~la~ 223 (264)
.....+.+|...|.+++|+|+ +.+|++++.|++|++||+.+++.... .+.+.+.+++|+|+|++|++
T Consensus 181 ---~~~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s 256 (611)
T 1nr0_A 181 ---KFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 256 (611)
T ss_dssp ---EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred ---eEeeeeccccCceEEEEECCC-CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEE
Confidence 223457889999999999995 57999999999999999988764322 24567899999999999999
Q ss_pred eeCCCeEEEEEcccC
Q psy9316 224 GNKEDLVTFIDVVKS 238 (264)
Q Consensus 224 gs~d~~i~~~d~~~~ 238 (264)
|+.|+.|++||+..+
T Consensus 257 ~s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 257 ASADKTIKIWNVATL 271 (611)
T ss_dssp EETTSEEEEEETTTT
T ss_pred EeCCCeEEEEeCCCC
Confidence 999999999998754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-27 Score=198.35 Aligned_cols=242 Identities=22% Similarity=0.313 Sum_probs=181.7
Q ss_pred eEeecCCCC--CceEeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEe
Q psy9316 5 VIQFHTPKS--PEYKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFAL 80 (264)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~ 80 (264)
+..+.++.. ....+.|.+. ..++++.|+.+++|+. .+..+.+.+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 344444433 3346667664 5678899999999975 4556778899999999999999999999999999999998
Q ss_pred ccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCC
Q psy9316 81 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFD 141 (264)
Q Consensus 81 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d 141 (264)
.... ....+.+|...|.+++|+|++ .++++++.||.|++||+++++. ...+++++.|
T Consensus 95 ~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 95 SSGK---CLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp TTCC---EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCc---EEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 6532 234577899999999999855 7899999999999999987542 1257889999
Q ss_pred CcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--ecCc--eEEEEEc-C
Q psy9316 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--TKGE--NINITWA-P 216 (264)
Q Consensus 142 ~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~~~~--~~~v~~s-p 216 (264)
+.|.+|+++...... .....+...+..++|+|+ +.++++++.||.|++||+++.+..... +... .....++ +
T Consensus 171 ~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 171 GLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp SCEEEEETTTCCEEE--EECCSSCCCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred CcEEEEECCCCceee--EEeccCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence 999999986543221 122345668999999985 468889999999999999987653322 1221 2234444 6
Q ss_pred CCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 217 NGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 217 ~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
++.+|++|+.|+.|++||+..+. ...+++||...+.++
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~ 285 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVIST 285 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCC----EEEEECCCSSCEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCch----hhhhhhccCCcEEEE
Confidence 88999999999999999987532 334567777665543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-27 Score=205.46 Aligned_cols=217 Identities=22% Similarity=0.336 Sum_probs=171.0
Q ss_pred eEeecCCCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR 93 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~ 93 (264)
..+.|.+. ++++++.|+.+++|+.. +.+..+.+|.+.|.+++|+|++++|++++.|++|++||+... . ....+
T Consensus 129 v~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~-~--~~~~~- 203 (393)
T 1erj_A 129 VCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-Q--CSLTL- 203 (393)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-E--EEEEE-
T ss_pred EEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC-e--eEEEE-
Confidence 35566554 56788999999999764 556788999999999999999999999999999999998642 1 11223
Q ss_pred cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc--------------------------ceEEEeecCCCcEEEE
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--------------------------QIMLASGSFDKSVAIF 147 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------------------~~~~~~~~~d~~i~i~ 147 (264)
.+...+.+++|+|.++.++++++.||.|++||+++++. ...+++++.|+.|++|
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 35677999999997778999999999999999876431 1257889999999999
Q ss_pred EeccCCCc---------cceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--EeecCceEEEEEcC
Q psy9316 148 ALDKKGDL---------NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IATKGENINITWAP 216 (264)
Q Consensus 148 ~~~~~~~~---------~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp 216 (264)
+++..... .....+.+|...|.+++|+|+ +.+|++++.||.|++||+++++... ..+...+.+++|+|
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGG-GCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCC-CCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 98643211 112356789999999999985 4688999999999999999887532 34566788999876
Q ss_pred ------CCCEEEEeeCCCeEEEEEcccC
Q psy9316 217 ------NGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 217 ------~g~~la~gs~d~~i~~~d~~~~ 238 (264)
++++|++|+.|+.|++|++.+.
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CcCcCCCCCEEEEECCCCcEEECccccc
Confidence 7899999999999999998653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-27 Score=221.61 Aligned_cols=223 Identities=21% Similarity=0.307 Sum_probs=176.6
Q ss_pred eecCCCCCceEeecCCCeeEEEeecCceEEeccccc-------cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEE
Q psy9316 7 QFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHN-------DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFA 79 (264)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-------~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~ 79 (264)
+.|+-......+.|.++.++++|+.|+.+++|+... ..+.+.+|.+.|.+++|+|++++|++|+.|++|++||
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 334333344455566667788999999999997532 2456789999999999999999999999999999999
Q ss_pred eccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc------------------------ceEE
Q psy9316 80 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS------------------------QIML 135 (264)
Q Consensus 80 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~------------------------~~~~ 135 (264)
+... .....+.+|...|.+++|+|++ .++++++.|++|++||+..... ...+
T Consensus 459 ~~~~---~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 534 (694)
T 3dm0_A 459 LAAG---VSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534 (694)
T ss_dssp TTTT---EEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred CCCC---cceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence 8642 2234577999999999999955 6788999999999999754210 1257
Q ss_pred EeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE-eecCceEEEEE
Q psy9316 136 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII-ATKGENINITW 214 (264)
Q Consensus 136 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~ 214 (264)
++++.|+.|++|+++... ....+.+|...|.+++|+|+ +.+|++++.||.|++||+++++.... .....+.+++|
T Consensus 535 ~s~s~d~~v~vwd~~~~~---~~~~~~~h~~~v~~v~~spd-g~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 610 (694)
T 3dm0_A 535 VSASWDKTVKVWNLSNCK---LRSTLAGHTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCF 610 (694)
T ss_dssp EEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTT-SSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCc---EEEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEE
Confidence 899999999999986532 23456789999999999985 57999999999999999998875322 23456788999
Q ss_pred cCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 215 APNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 215 sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
+|++.+|++++ ++.|++||++.+
T Consensus 611 sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 611 SPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTT
T ss_pred cCCCcEEEEEc-CCCEEEEECCCC
Confidence 99999988877 666999998764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-26 Score=197.28 Aligned_cols=236 Identities=19% Similarity=0.273 Sum_probs=177.5
Q ss_pred CceEeecCCCeeEEEeecCceEEeccccc-------cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCC
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTHN-------DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDL 86 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-------~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~ 86 (264)
....+.|.++.++++|+.|+.|++|+... ..+.+.+|.+.|.+++|+|++++|++|+.|+.|++|+....
T Consensus 42 ~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~--- 118 (340)
T 4aow_A 42 TQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--- 118 (340)
T ss_dssp EEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---
T ss_pred EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc---
Confidence 34477787777888999999999997532 34678899999999999999999999999999999987542
Q ss_pred cccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc----------------------ceEEEeecCCCcE
Q psy9316 87 NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS----------------------QIMLASGSFDKSV 144 (264)
Q Consensus 87 ~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------------------~~~~~~~~~d~~i 144 (264)
........+...+....+.+.+ .++++++.|+.+++||+..... ...+++++.|+.|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i 197 (340)
T 4aow_A 119 TTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 197 (340)
T ss_dssp EEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCE
T ss_pred ceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEE
Confidence 2223355677778888888754 6788999999999999865321 1246788999999
Q ss_pred EEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE-eecCceEEEEEcCCCCEEEE
Q psy9316 145 AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII-ATKGENINITWAPNGNTIAV 223 (264)
Q Consensus 145 ~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~ 223 (264)
++|+++... ....+.+|..+|.+++|+|+ +.+|++++.||.|++||+++.+.... .....+.++.|+|++.+++
T Consensus 198 ~i~d~~~~~---~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~- 272 (340)
T 4aow_A 198 KVWNLANCK---LKTNHIGHTGYLNTVTVSPD-GSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC- 272 (340)
T ss_dssp EEEETTTTE---EEEEECCCSSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEE-
T ss_pred EEEECCCCc---eeeEecCCCCcEEEEEECCC-CCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceee-
Confidence 999986432 23456789999999999985 57899999999999999998875333 3345678899999876665
Q ss_pred eeCCCeEEEEEcccCCC-----CCCCcccCcccceeeeee
Q psy9316 224 GNKEDLVTFIDVVKSLP-----PRERTLTSRGHLMETRSL 258 (264)
Q Consensus 224 gs~d~~i~~~d~~~~~~-----~~~~~~~~~~h~~~~~~~ 258 (264)
++.|+.|++||++.... .........+|...+.+|
T Consensus 273 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 312 (340)
T 4aow_A 273 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 312 (340)
T ss_dssp EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEE
T ss_pred ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEE
Confidence 55699999999875322 122223456777777665
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=212.37 Aligned_cols=193 Identities=20% Similarity=0.325 Sum_probs=156.8
Q ss_pred ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcE
Q psy9316 42 NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 121 (264)
Q Consensus 42 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i 121 (264)
...+++.+|.+.|.+++|+|++++|++|+.|++|++||+... .....+..|...|.+++|+|++ .++++|+.|+.+
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~---~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v 132 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS---QKTHAIKLHCPWVMECAFAPNG-QSVACGGLDSAC 132 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT---EEEEEEECCCTTCCCCEECTTS-SEEEECCSSSCC
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ccceEEecCCCCEEEEEECCCC-CEEEEeeCCCcE
Confidence 345678999999999999999999999999999999997642 2334577899999999999955 789999999999
Q ss_pred EEEECCCCC---------------------------cceEEEeecCCCcEEEEEeccCCCccce--EEEeccccceeeEE
Q psy9316 122 RIWDARTQK---------------------------SQIMLASGSFDKSVAIFALDKKGDLNKE--VVYRGHTGSVDQLC 172 (264)
Q Consensus 122 ~vwd~~~~~---------------------------~~~~~~~~~~d~~i~i~~~~~~~~~~~~--~~~~~h~~~i~~i~ 172 (264)
++||+.+.. ....+++++.|+.|++||+......... ....+|...|.++.
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence 999986421 0124889999999999998754322110 00157888999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCCCc-c--eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 173 WHATNPDLLSTASGDKTVRIWDARTQK-S--QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 173 ~~~~~~~~i~s~~~dg~i~iwD~~t~~-~--~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
|+|.++.+|++|+.||+|++||++... . ....+.+.+.+++|+|+|++|++|+.|+.|++||++.+
T Consensus 213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred eecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 998778899999999999999998543 2 22335667899999999999999999999999999864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=204.83 Aligned_cols=217 Identities=12% Similarity=0.202 Sum_probs=173.9
Q ss_pred eEeecCC---CeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCccc
Q psy9316 16 YKLLPSG---SQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNKE 89 (264)
Q Consensus 16 ~~~~~~~---~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~~ 89 (264)
..+.|.+ +.++++++.|+.+++|+. .+.+..+.+|.+.|.+++|+| ++++|++++.||.|++|++.... ..
T Consensus 75 ~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~ 151 (366)
T 3k26_A 75 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT---LV 151 (366)
T ss_dssp EEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE---EE
T ss_pred EEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe---EE
Confidence 4566663 356778999999999975 456778889999999999999 99999999999999999986422 22
Q ss_pred EEE---ecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-----------------------------------
Q psy9316 90 VVY---RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS----------------------------------- 131 (264)
Q Consensus 90 ~~~---~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------------------------------- 131 (264)
..+ ..|...|.+++|+|++ .++++++.||.|++||+++.+.
T Consensus 152 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 152 AIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp EEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred EEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence 334 5799999999999954 7899999999999999986421
Q ss_pred ----------ceEEEeecCCCcEEEEEeccCCC-----------ccceEEEeccccceeeEEEcCCC-CCEEEEEeCCCc
Q psy9316 132 ----------QIMLASGSFDKSVAIFALDKKGD-----------LNKEVVYRGHTGSVDQLCWHATN-PDLLSTASGDKT 189 (264)
Q Consensus 132 ----------~~~~~~~~~d~~i~i~~~~~~~~-----------~~~~~~~~~h~~~i~~i~~~~~~-~~~i~s~~~dg~ 189 (264)
...+++++.|+.|.+|+++.... ......+..|...|.+++|+|+. +.+|++++.||.
T Consensus 231 ~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~ 310 (366)
T 3k26_A 231 RNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK 310 (366)
T ss_dssp SSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC
T ss_pred cceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc
Confidence 23678899999999999875432 11234567788899999999862 679999999999
Q ss_pred EEEEeCCCCcce------eEee--cCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 190 VRIWDARTQKSQ------IIAT--KGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 190 i~iwD~~t~~~~------~~~~--~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
|++||+++.+.. ...+ ...+.+++|+|++++|++|+.|+.|++||+.
T Consensus 311 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 311 LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999987531 1122 3568899999999999999999999999975
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-27 Score=198.29 Aligned_cols=187 Identities=28% Similarity=0.435 Sum_probs=155.0
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEE
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~v 123 (264)
..++.+|.+.|.+++|+|++++|++|+.|+.|++|++.. +. ....+.+|...|.+++|+|++ +++++++.||.|++
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~--~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~v 91 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GK--FEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKI 91 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CC--EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEE
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC-cc--cchhhccCCCceEEEEEcCCC-CEEEEECCCCEEEE
Confidence 345779999999999999999999999999999999764 22 234567899999999999954 78999999999999
Q ss_pred EECCCCCc-------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEE
Q psy9316 124 WDARTQKS-------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA 184 (264)
Q Consensus 124 wd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~ 184 (264)
||+++++. ...+++++.|+.|.+|+++... ....+..|..+|.+++|+|+ +.+++++
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~ 167 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRD-GSLIVSS 167 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTT-SSEEEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE---EEEEecCCCCcEEEEEEcCC-CCEEEEE
Confidence 99987542 1257889999999999986543 23356788899999999985 5688999
Q ss_pred eCCCcEEEEeCCCCcceeEe---ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 185 SGDKTVRIWDARTQKSQIIA---TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 185 ~~dg~i~iwD~~t~~~~~~~---~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
+.||.|++||+++.+..... ....+..++|+|++++|++++.|+.|++||++.+
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 224 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999988753322 2235678999999999999999999999998764
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-27 Score=208.28 Aligned_cols=231 Identities=19% Similarity=0.409 Sum_probs=182.9
Q ss_pred EeecCCCCCce-EeecCCCeeEEEeecCceEEecccc------------ccccccccCCCCEEEEEECCCCC-eEEEEEC
Q psy9316 6 IQFHTPKSPEY-KLLPSGSQFHLVCKIDDYVKHFNTH------------NDIKEYQAHGSKVHSVAWSCDGR-RLASGSF 71 (264)
Q Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~------------~~~~~~~~h~~~V~~l~~s~~g~-~l~s~s~ 71 (264)
..+.++...+. ++.|.+..+.++++.++.+++|+.. ..+..+.+|.+.|.+++|+|+++ +|++|+.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 34445555444 7777656677788899999998754 34566789999999999999988 9999999
Q ss_pred CCcEEEEEeccCCCCc----ccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC---c-------------
Q psy9316 72 DKSVAIFALDKKGDLN----KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK---S------------- 131 (264)
Q Consensus 72 dg~i~v~~~~~~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~------------- 131 (264)
||.|++|++....... ....+..|...|.+++|+|.+..++++++.||.|++||+++.. .
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 282 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 282 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEE
Confidence 9999999987532211 1234668999999999999778899999999999999998652 1
Q ss_pred -------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc-----
Q psy9316 132 -------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK----- 199 (264)
Q Consensus 132 -------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~----- 199 (264)
..++++|+.|+.|.+|+++.... ....+..|...|.+++|+|.+..+|++++.||.|++||+....
T Consensus 283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 360 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADKTVALWDLRNLKL--KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 360 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence 11578999999999999876332 2345678999999999999887889999999999999998721
Q ss_pred --------ceeE---eecCceEEEEEcCCCC-EEEEeeCCCeEEEEEcccC
Q psy9316 200 --------SQII---ATKGENINITWAPNGN-TIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 200 --------~~~~---~~~~~~~~v~~sp~g~-~la~gs~d~~i~~~d~~~~ 238 (264)
.... .+...+.+++|+|+++ +|++++.|+.|++|++...
T Consensus 361 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 361 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 1111 2344688999999999 8999999999999998763
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=210.00 Aligned_cols=222 Identities=17% Similarity=0.277 Sum_probs=178.0
Q ss_pred EeecCCCeeEEEeecCceEEeccccc------cccccccCCCCEEEEEECCC-CCeEEEEECCCcEEEEEeccCC-----
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHN------DIKEYQAHGSKVHSVAWSCD-GRRLASGSFDKSVAIFALDKKG----- 84 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~v~~~~~~~----- 84 (264)
.+.|.+. +++++..|+.+++|+... .+..+.+|.+.|.+++|+|+ +++|++++.|+.|++|++....
T Consensus 74 ~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 74 DWSHNNK-IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp EECSSSS-CEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred EECCCCC-eEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc
Confidence 5666554 567788899999997754 56778899999999999998 8999999999999999987643
Q ss_pred -CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc--------------------------ceEEEe
Q psy9316 85 -DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--------------------------QIMLAS 137 (264)
Q Consensus 85 -~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------------------~~~~~~ 137 (264)
..........|...|.+++|+|+++.++++++.||.|++||+++++. ...+++
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (416)
T 2pm9_A 153 YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232 (416)
T ss_dssp CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence 11111123578899999999997678999999999999999976421 125778
Q ss_pred ecCCC---cEEEEEeccCCCccceEEEe-ccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--EeecCceEE
Q psy9316 138 GSFDK---SVAIFALDKKGDLNKEVVYR-GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IATKGENIN 211 (264)
Q Consensus 138 ~~~d~---~i~i~~~~~~~~~~~~~~~~-~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~ 211 (264)
++.|+ .|.+|+++...... ..+. +|...|.+++|+|.++.+|++++.||.|++||+++.+... ..+...+.+
T Consensus 233 ~~~d~~~~~i~~~d~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~ 310 (416)
T 2pm9_A 233 ATGSDNDPSILIWDLRNANTPL--QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFK 310 (416)
T ss_dssp EECCSSSCCCCEEETTSTTSCS--BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCC
T ss_pred EECCCCCceEEEEeCCCCCCCc--EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEE
Confidence 88888 99999987643221 2345 7899999999999667889999999999999999887533 234566889
Q ss_pred EEEcCCC-CEEEEeeCCCeEEEEEcccCCCC
Q psy9316 212 ITWAPNG-NTIAVGNKEDLVTFIDVVKSLPP 241 (264)
Q Consensus 212 v~~sp~g-~~la~gs~d~~i~~~d~~~~~~~ 241 (264)
++|+|++ .+|++++.|+.|++||+......
T Consensus 311 ~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 311 TKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp EEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred EEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 9999999 89999999999999999875543
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-27 Score=202.78 Aligned_cols=193 Identities=22% Similarity=0.305 Sum_probs=151.3
Q ss_pred cccccccCCCCEEEEEE-----CC-CCCeEEEEECCCcEEEEEeccCCCC----cccEEEecccccEEeEEEecCCCCeE
Q psy9316 43 DIKEYQAHGSKVHSVAW-----SC-DGRRLASGSFDKSVAIFALDKKGDL----NKEVVYRGHTGSVDQLCWHATNPDLL 112 (264)
Q Consensus 43 ~~~~~~~h~~~V~~l~~-----s~-~g~~l~s~s~dg~i~v~~~~~~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~l 112 (264)
....+.+|.+.|.+++| ++ ++++|++|+.|++|++|++...... .....+.+|...|.+++|+|++ .++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~l 91 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFA 91 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-TEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-CEE
Confidence 34567899999999999 76 9999999999999999998653211 1223467899999999999854 789
Q ss_pred EEEeCCCcEEEEECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEE
Q psy9316 113 STASGDKTVRIWDARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173 (264)
Q Consensus 113 ~s~s~dg~i~vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~ 173 (264)
++++.|++|++||+++++.. ..+++++.|+.|++|++.... ........+|...|.+++|
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeeee
Confidence 99999999999999875421 257889999999999985211 1000011268889999999
Q ss_pred cCCCC---------CEEEEEeCCCcEEEEeCCCCcc-eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 174 HATNP---------DLLSTASGDKTVRIWDARTQKS-QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 174 ~~~~~---------~~i~s~~~dg~i~iwD~~t~~~-~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
+|... .++++++.||.|++||...... ....+...+.+++|+|+|++|++|+.|+.|++||+..
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 98642 5899999999999999543322 2234556789999999999999999999999999854
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=207.33 Aligned_cols=222 Identities=16% Similarity=0.255 Sum_probs=163.2
Q ss_pred CCCCceEeecCCCeeEEEeecCceEEecccc----ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCC
Q psy9316 11 PKSPEYKLLPSGSQFHLVCKIDDYVKHFNTH----NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDL 86 (264)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~ 86 (264)
.......+.|.+. ++++++.|+.+++|+.. ..+..+.+|.+.|.+++|+|++++|++++.|+.|++|++......
T Consensus 12 ~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 12 KPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp SCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC
T ss_pred CcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce
Confidence 3334457777665 45677789999999764 467788999999999999999999999999999999998764423
Q ss_pred cccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEec-cc
Q psy9316 87 NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG-HT 165 (264)
Q Consensus 87 ~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~-h~ 165 (264)
.....+..|...|.+++|+|++ .++++++.|+.|++||+++++... ....+.. |.
T Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~-----------------------~~~~~~~~h~ 146 (377)
T 3dwl_C 91 KQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWW-----------------------VSKHLKRPLR 146 (377)
T ss_dssp CCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CC-----------------------CCEEECSSCC
T ss_pred eeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccce-----------------------eeeEeecccC
Confidence 3344567899999999999954 678899999999999998654210 0112344 88
Q ss_pred cceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc------------------ce-eEeecCceEEEEEcCCCCEEEEeeC
Q psy9316 166 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK------------------SQ-IIATKGENINITWAPNGNTIAVGNK 226 (264)
Q Consensus 166 ~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~------------------~~-~~~~~~~~~~v~~sp~g~~la~gs~ 226 (264)
..|.+++|+|+ +.+|++++.||.|++||+++.. .. ...+...+.+++|+|+|++|++|+.
T Consensus 147 ~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 225 (377)
T 3dwl_C 147 STILSLDWHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH 225 (377)
T ss_dssp SCEEEEEECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET
T ss_pred CCeEEEEEcCC-CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC
Confidence 89999999985 5789999999999999996332 10 0133456889999999999999999
Q ss_pred CCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 227 EDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 227 d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
|+.|++||++.+..+.+...++.+|...+++|
T Consensus 226 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 257 (377)
T 3dwl_C 226 DSSVTIAYPSAPEQPPRALITVKLSQLPLRSL 257 (377)
T ss_dssp TTEEC-CEECSTTSCEEECCCEECSSSCEEEE
T ss_pred CCcEEEEECCCCCCcceeeEeecCCCCceEEE
Confidence 99999999987655332245667777766654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-27 Score=206.51 Aligned_cols=235 Identities=14% Similarity=0.269 Sum_probs=178.7
Q ss_pred eEeecCCCeeEEEe----------ecCceEEecccccc----ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEec
Q psy9316 16 YKLLPSGSQFHLVC----------KIDDYVKHFNTHND----IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALD 81 (264)
Q Consensus 16 ~~~~~~~~~~~~~~----------~~d~~~~~~~~~~~----~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~ 81 (264)
..+.|.+..+.+++ +.|+.+++|+.... ......|.+.|.+++|+|++++|++|+.||.|++|++.
T Consensus 18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~ 97 (416)
T 2pm9_A 18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTN 97 (416)
T ss_dssp CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCS
T ss_pred EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecc
Confidence 34556655555566 78899999976432 22223688999999999999999999999999999987
Q ss_pred cCCC-CcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC------c-----------------------
Q psy9316 82 KKGD-LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK------S----------------------- 131 (264)
Q Consensus 82 ~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~------~----------------------- 131 (264)
.... ......+.+|...|.+++|+|+++.++++++.||.|++||+++.+ .
T Consensus 98 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 177 (416)
T 2pm9_A 98 EANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL 177 (416)
T ss_dssp STTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC
T ss_pred cccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC
Confidence 5211 123345678999999999999767899999999999999997654 1
Q ss_pred ceEEEeecCCCcEEEEEeccCCCccceEEEecc------ccceeeEEEcCCCCCEEEEEeCCC---cEEEEeCCCCc-c-
Q psy9316 132 QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH------TGSVDQLCWHATNPDLLSTASGDK---TVRIWDARTQK-S- 200 (264)
Q Consensus 132 ~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h------~~~i~~i~~~~~~~~~i~s~~~dg---~i~iwD~~t~~-~- 200 (264)
...+++++.|+.|.+|+++.... ...+..| ...|.+++|+|++..++++++.|+ .|++||+++.. .
T Consensus 178 ~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~ 254 (416)
T 2pm9_A 178 AHVFASAGSSNFASIWDLKAKKE---VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL 254 (416)
T ss_dssp TTEEEEESSSSCEEEEETTTTEE---EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS
T ss_pred CcEEEEEcCCCCEEEEECCCCCc---ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc
Confidence 12578889999999999865322 2233333 678999999998778999999999 99999999863 2
Q ss_pred -eeE-eecCceEEEEEcC-CCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeee
Q psy9316 201 -QII-ATKGENINITWAP-NGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRS 257 (264)
Q Consensus 201 -~~~-~~~~~~~~v~~sp-~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~ 257 (264)
... .+...+.+++|+| ++++|++++.|+.|++||++.+. ...++.+|...+.+
T Consensus 255 ~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~----~~~~~~~~~~~v~~ 310 (416)
T 2pm9_A 255 QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE----QLSQFPARGNWCFK 310 (416)
T ss_dssp BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC----EEEEEECSSSCCCC
T ss_pred EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc----cceeecCCCCceEE
Confidence 222 3556789999999 99999999999999999987643 23344555554443
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-27 Score=201.05 Aligned_cols=216 Identities=22% Similarity=0.380 Sum_probs=169.9
Q ss_pred eEeecCC--CeeEEEeecCceEEeccccc---cc-cccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCccc
Q psy9316 16 YKLLPSG--SQFHLVCKIDDYVKHFNTHN---DI-KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE 89 (264)
Q Consensus 16 ~~~~~~~--~~~~~~~~~d~~~~~~~~~~---~~-~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~ 89 (264)
..+.|.+ +.++++++.|+.+++|+... .+ ..+.+|.+.|.+++|+|++++|++++.||.|++|++.... .
T Consensus 45 ~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~ 120 (368)
T 3mmy_A 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ----A 120 (368)
T ss_dssp EEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----E
T ss_pred EEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC----c
Confidence 3666664 56778899999999997643 23 6788999999999999999999999999999999986422 2
Q ss_pred EEEecccccEEeEEE--ecCCCCeEEEEeCCCcEEEEECCCCCcc-----------------------------------
Q psy9316 90 VVYRGHTGSVDQLCW--HATNPDLLSTASGDKTVRIWDARTQKSQ----------------------------------- 132 (264)
Q Consensus 90 ~~~~~h~~~v~~i~~--~~~~~~~l~s~s~dg~i~vwd~~~~~~~----------------------------------- 132 (264)
.....|...|.+++| ++ +..++++++.||.|++||+++++..
T Consensus 121 ~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 121 IQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp EEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSS
T ss_pred eeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEecc
Confidence 235679999999999 55 3468899999999999999765321
Q ss_pred -----------------------------eEEEeecCCCcEEEEEeccCCCccceEEEecccc------------ceeeE
Q psy9316 133 -----------------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG------------SVDQL 171 (264)
Q Consensus 133 -----------------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~------------~i~~i 171 (264)
..+++++.|+.+.+|+++..........+.+|.. +|.++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 279 (368)
T 3mmy_A 200 QPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI 279 (368)
T ss_dssp SCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEE
T ss_pred ccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEE
Confidence 0177888899999999875433233445566665 79999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE--eecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 172 CWHATNPDLLSTASGDKTVRIWDARTQKSQII--ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 172 ~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~--~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
+|+|+ +.+|++++.||.|++||+++++.... .+...+.+++|+|+|++|++|+.|+..+.|++..
T Consensus 280 ~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 280 AFHPV-HGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EECTT-TCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEecC-CCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 99995 46889999999999999998875332 3456788999999999999999998766666543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=200.80 Aligned_cols=195 Identities=20% Similarity=0.350 Sum_probs=158.4
Q ss_pred cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecC-CCCeEEEEeCCCcE
Q psy9316 43 DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT-NPDLLSTASGDKTV 121 (264)
Q Consensus 43 ~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~~l~s~s~dg~i 121 (264)
.+..+.+|.+.|.+++|+|++++|++|+.||.|++|++... .......+.+|...|.+++|++. ++.+|++++.||.|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 45678899999999999999999999999999999998632 22333457789999999999864 25799999999999
Q ss_pred EEEECCCCC---------------------c--ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCC--
Q psy9316 122 RIWDARTQK---------------------S--QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT-- 176 (264)
Q Consensus 122 ~vwd~~~~~---------------------~--~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~-- 176 (264)
++||+++++ . ...+++++.|+.|.+|+++..... ....+..|...|.+++|+|.
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT-SPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC-CEEEEECCTTCEEEEEECCCC-
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce-eeEEecCCCCceEEEEEcCccc
Confidence 999997753 1 235788899999999998765332 23356789999999999995
Q ss_pred ----------CCCEEEEEeCCCcEEEEeCCCCcce--e----EeecCceEEEEEcCC---CCEEEEeeCCCeEEEEEccc
Q psy9316 177 ----------NPDLLSTASGDKTVRIWDARTQKSQ--I----IATKGENINITWAPN---GNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 177 ----------~~~~i~s~~~dg~i~iwD~~t~~~~--~----~~~~~~~~~v~~sp~---g~~la~gs~d~~i~~~d~~~ 237 (264)
++.++++++.||.|++||+++.... . ..+...+.+++|+|+ +++|++++.|+.|++||++.
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 5689999999999999999876532 1 123456889999999 89999999999999999987
Q ss_pred CC
Q psy9316 238 SL 239 (264)
Q Consensus 238 ~~ 239 (264)
+.
T Consensus 241 ~~ 242 (379)
T 3jrp_A 241 EQ 242 (379)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-26 Score=197.46 Aligned_cols=240 Identities=15% Similarity=0.204 Sum_probs=181.4
Q ss_pred CCceEeecCCCeeEEEeec---CceEEecccccc--ccc-cccCCCCEEEEEECCC---CCeEEEEECCCcEEEEEeccC
Q psy9316 13 SPEYKLLPSGSQFHLVCKI---DDYVKHFNTHND--IKE-YQAHGSKVHSVAWSCD---GRRLASGSFDKSVAIFALDKK 83 (264)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~--~~~-~~~h~~~V~~l~~s~~---g~~l~s~s~dg~i~v~~~~~~ 83 (264)
.....+.|.+..+.++++. |+.+++|+..+. ... ..+|.+.|.+++|+|+ +++|++|+.||.|++|++...
T Consensus 21 v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 100 (357)
T 3i2n_A 21 VFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAP 100 (357)
T ss_dssp EEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSC
T ss_pred eEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCC
Confidence 3445788888777667766 999999976432 222 2378999999999998 799999999999999998753
Q ss_pred CCCcccEEEecccccEEeEEEec-----CCCCeEEEEeCCCcEEEEECCCCCc---------------------------
Q psy9316 84 GDLNKEVVYRGHTGSVDQLCWHA-----TNPDLLSTASGDKTVRIWDARTQKS--------------------------- 131 (264)
Q Consensus 84 ~~~~~~~~~~~h~~~v~~i~~~~-----~~~~~l~s~s~dg~i~vwd~~~~~~--------------------------- 131 (264)
. .....+.+|...|.++.|.+ .++.++++++.||.|++||+++++.
T Consensus 101 ~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (357)
T 3i2n_A 101 E--MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ 178 (357)
T ss_dssp S--SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred C--ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC
Confidence 3 12345778999999997653 2457899999999999999986531
Q ss_pred -ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCC--CCCEEEEEeCCCcEEEEeCCCCcce--eE---
Q psy9316 132 -QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT--NPDLLSTASGDKTVRIWDARTQKSQ--II--- 203 (264)
Q Consensus 132 -~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~--~~~~i~s~~~dg~i~iwD~~t~~~~--~~--- 203 (264)
...+++++.|+.|.+|+++... ......|...|.+++|+|. ++.++++++.||.|++||+++.+.. ..
T Consensus 179 ~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 254 (357)
T 3i2n_A 179 EERVVCAGYDNGDIKLFDLRNMA----LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS 254 (357)
T ss_dssp CCCEEEEEETTSEEEEEETTTTE----EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEE
T ss_pred CCCEEEEEccCCeEEEEECccCc----eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeec
Confidence 1246778889999999986532 2334668889999999984 4578899999999999999876531 11
Q ss_pred --eecCceEEEEEcCCCC-EEEEeeCCCeEEEEEcccCCCCC---------------CCcccCcccceeeeee
Q psy9316 204 --ATKGENINITWAPNGN-TIAVGNKEDLVTFIDVVKSLPPR---------------ERTLTSRGHLMETRSL 258 (264)
Q Consensus 204 --~~~~~~~~v~~sp~g~-~la~gs~d~~i~~~d~~~~~~~~---------------~~~~~~~~h~~~~~~~ 258 (264)
.+...+.+++|+|+++ +|++|+.|+.|++||++.+.... +...+..+|...++++
T Consensus 255 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (357)
T 3i2n_A 255 EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL 327 (357)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEE
T ss_pred cCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEE
Confidence 3456788999999999 89999999999999998654432 1233456676666654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=201.01 Aligned_cols=194 Identities=16% Similarity=0.229 Sum_probs=157.9
Q ss_pred cccccccCCCCEEEEEECCCC-CeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcE
Q psy9316 43 DIKEYQAHGSKVHSVAWSCDG-RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 121 (264)
Q Consensus 43 ~~~~~~~h~~~V~~l~~s~~g-~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i 121 (264)
..+.+.+|.+.|.+++|+|++ ++|++|+.||.|++|++.... ........+|...|.+++|+|.++.++++++.|+.|
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 455678999999999999999 999999999999999987532 222122236999999999999666899999999999
Q ss_pred EEEECCCCCc---------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCE
Q psy9316 122 RIWDARTQKS---------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDL 180 (264)
Q Consensus 122 ~vwd~~~~~~---------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~ 180 (264)
++||++.... ...+++++.|+.|.+|+++ + .....+..|...|.+++|+|++..+
T Consensus 144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~--~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--G--HEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--S--CEEEEEECSSSCEEEEEECSSCTTE
T ss_pred EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--C--CEEEEeccCCCcEEEEEECCCCCCE
Confidence 9999985321 1257889999999999983 2 2334567899999999999977669
Q ss_pred EEEEeCCCcEEEEeCCC----Ccc-eeEeecCceEEEEEcC-CCCEEEEeeCCCeEEEEEcccCCCC
Q psy9316 181 LSTASGDKTVRIWDART----QKS-QIIATKGENINITWAP-NGNTIAVGNKEDLVTFIDVVKSLPP 241 (264)
Q Consensus 181 i~s~~~dg~i~iwD~~t----~~~-~~~~~~~~~~~v~~sp-~g~~la~gs~d~~i~~~d~~~~~~~ 241 (264)
+++++.|+.|++||+++ ... ....+...+.+++|+| ++++|++++.|+.|++||++.+...
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~ 286 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP 286 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 99999999999999997 332 2234566789999999 9999999999999999999875543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=208.96 Aligned_cols=226 Identities=27% Similarity=0.421 Sum_probs=179.8
Q ss_pred EeecCCCeeEEEeecCceEEecccc-ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecc
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTH-NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH 95 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h 95 (264)
.+.|.+. ..++++.|+.++.|+.. ..+..+.+|...|.+++|+|++++|++++.|+.|++|+.+ +. ....+.+|
T Consensus 310 ~~~~~~~-~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~--~~~~~~~~ 384 (577)
T 2ymu_A 310 AFSPDGQ-TIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQ--LLQTLTGH 384 (577)
T ss_dssp EECTTSS-EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--CC--EEEEEECC
T ss_pred EECCCCC-EEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC--CC--EEEEecCC
Confidence 5556554 45678899999999753 4567788999999999999999999999999999999853 22 23456789
Q ss_pred cccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc------------------ceEEEeecCCCcEEEEEeccCCCccc
Q psy9316 96 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS------------------QIMLASGSFDKSVAIFALDKKGDLNK 157 (264)
Q Consensus 96 ~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~------------------~~~~~~~~~d~~i~i~~~~~~~~~~~ 157 (264)
...|.+++|+|++ +++++++.|+.|++||...... ...+++++.|+.+.+|+.. +. .
T Consensus 385 ~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~--~ 459 (577)
T 2ymu_A 385 SSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQ--L 459 (577)
T ss_dssp SSCEEEEEECTTS-SCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SC--E
T ss_pred CCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CC--E
Confidence 9999999999855 6888999999999999754311 1257888999999999853 22 2
Q ss_pred eEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc-eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 158 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 158 ~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~-~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
...+.+|...|.+++|+|+ +.+|++++.|+.|++||...+.. ....+...+.+++|+|+|++|++++.|+.|++||..
T Consensus 460 ~~~~~~~~~~v~~~~~spd-~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 460 LQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp EEEEECCSSCEEEEEECTT-SCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 3456789999999999985 57899999999999999754433 223456678999999999999999999999999953
Q ss_pred cCCCCCCCcccCcccceeeeee
Q psy9316 237 KSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 237 ~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
.+...++.||...+.+|
T Consensus 539 -----~~~~~~~~~h~~~v~~~ 555 (577)
T 2ymu_A 539 -----GQLLQTLTGHSSSVWGV 555 (577)
T ss_dssp -----SCEEEEEECCSSCEEEE
T ss_pred -----CCEEEEEcCCCCCEEEE
Confidence 23445678998887765
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-26 Score=198.21 Aligned_cols=204 Identities=19% Similarity=0.379 Sum_probs=162.8
Q ss_pred ceEEecc--ccccccccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCcccEEE-----------eccccc
Q psy9316 33 DYVKHFN--THNDIKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNKEVVY-----------RGHTGS 98 (264)
Q Consensus 33 ~~~~~~~--~~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~-----------~~h~~~ 98 (264)
..+++|. ..+..+.+.+|.+.|.+++|+| ++++|++|+.||.|++|++........ ... .+|...
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY-YTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC-EEECEEEEECTTCTTCCSSC
T ss_pred CcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce-EeccccccccccccccCCCc
Confidence 3344443 3455667789999999999999 999999999999999999875432221 111 248999
Q ss_pred EEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc---------------------ceEEEeecCCCcEEEEEeccCCCccc
Q psy9316 99 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---------------------QIMLASGSFDKSVAIFALDKKGDLNK 157 (264)
Q Consensus 99 v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---------------------~~~~~~~~~d~~i~i~~~~~~~~~~~ 157 (264)
|.+++|+|.+..++++++.||.|++||+++++. ...+++++.|+.+.+|+++....
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--- 178 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC--- 178 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC---
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce---
Confidence 999999997778999999999999999987532 12678889999999999875433
Q ss_pred eEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee------------------EeecCceEEEEEcCCCC
Q psy9316 158 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI------------------IATKGENINITWAPNGN 219 (264)
Q Consensus 158 ~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~------------------~~~~~~~~~v~~sp~g~ 219 (264)
...+..|...|.+++|+|.+..++++++.||.|++||+++..... ..+...+.+++|+|+++
T Consensus 179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 235678999999999999877789999999999999998765211 12345688999999999
Q ss_pred EEEEeeCCCeEEEEEcccCCC
Q psy9316 220 TIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 220 ~la~gs~d~~i~~~d~~~~~~ 240 (264)
+|++++.|+.+++||++.+..
T Consensus 259 ~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 259 HLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp EEEEEETTSCEEEEETTTCCB
T ss_pred EEEEecCCCeEEEEECCCCcc
Confidence 999999999999999987543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-26 Score=209.10 Aligned_cols=207 Identities=28% Similarity=0.441 Sum_probs=167.7
Q ss_pred EeecCCCeeEEEeecCceEEeccc-cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecc
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT-HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH 95 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h 95 (264)
.+.|.+. ..+++..|+.+++|+. .+.+..+.+|.+.|.+++|+|++++|++++.|+.|++|+.+ +. ....+.+|
T Consensus 351 ~~s~~g~-~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~--~~~~~~~~ 425 (577)
T 2ymu_A 351 AFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQ--LLQTLTGH 425 (577)
T ss_dssp EECTTSS-EEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--CC--EEEEEECC
T ss_pred EECCCCC-EEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--CC--EEEEecCC
Confidence 4556664 4567888999999975 45667888999999999999999999999999999999853 22 23456789
Q ss_pred cccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc------------------ceEEEeecCCCcEEEEEeccCCCccc
Q psy9316 96 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS------------------QIMLASGSFDKSVAIFALDKKGDLNK 157 (264)
Q Consensus 96 ~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~------------------~~~~~~~~~d~~i~i~~~~~~~~~~~ 157 (264)
...|.+++|+|++ .++++++.|+.|++||...... ...+++++.|+.|++|+.. +. .
T Consensus 426 ~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~--~ 500 (577)
T 2ymu_A 426 SSSVWGVAFSPDD-QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQ--L 500 (577)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SC--E
T ss_pred CCCeEEEEECCCC-CEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CC--E
Confidence 9999999999955 7899999999999999754311 1257889999999999852 22 2
Q ss_pred eEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc-eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEE
Q psy9316 158 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIATKGENINITWAPNGNTIAVGNKEDLVTFID 234 (264)
Q Consensus 158 ~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~-~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d 234 (264)
...+.+|...|.+++|+|+ +.+|++++.||.|++||...... ....+.+.+.+++|+|||++|++++.|+.|++||
T Consensus 501 ~~~~~~h~~~v~~l~~s~d-g~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 501 LQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEeCCCCCEEEEEEcCC-CCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 3456789999999999985 46889999999999999754332 2234567799999999999999999999999997
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=203.87 Aligned_cols=211 Identities=17% Similarity=0.155 Sum_probs=152.8
Q ss_pred CCeeEEEeecCceEEeccccc-------cccccccCCCCEEEEEECC--------CCCeEEEEECCCcEEEEEeccCCCC
Q psy9316 22 GSQFHLVCKIDDYVKHFNTHN-------DIKEYQAHGSKVHSVAWSC--------DGRRLASGSFDKSVAIFALDKKGDL 86 (264)
Q Consensus 22 ~~~~~~~~~~d~~~~~~~~~~-------~~~~~~~h~~~V~~l~~s~--------~g~~l~s~s~dg~i~v~~~~~~~~~ 86 (264)
.+.++.+++.|+.+++|+... .+..+.+|.+.|.+++|+| |+++|++||.|++|++||+...+
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~-- 177 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG-- 177 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE--
T ss_pred CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc--
Confidence 345567789999999997543 2456789999999999997 88999999999999999986532
Q ss_pred cccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-----------------------------------
Q psy9316 87 NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS----------------------------------- 131 (264)
Q Consensus 87 ~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------------------------------- 131 (264)
....+..|...|.+++|+|.+.++|++++.||+|++||+++++.
T Consensus 178 -~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 256 (393)
T 4gq1_A 178 -PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS 256 (393)
T ss_dssp -EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred -eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence 22345678899999999998877899999999999999976431
Q ss_pred ----------ceEEEeecCCCcEEEEEeccCCCccce---------------EEEeccccceeeEEEcCC-CCCEEEEEe
Q psy9316 132 ----------QIMLASGSFDKSVAIFALDKKGDLNKE---------------VVYRGHTGSVDQLCWHAT-NPDLLSTAS 185 (264)
Q Consensus 132 ----------~~~~~~~~~d~~i~i~~~~~~~~~~~~---------------~~~~~h~~~i~~i~~~~~-~~~~i~s~~ 185 (264)
...+++++.|+.+.+|++......... ..............|+|. +..++++|+
T Consensus 257 v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs 336 (393)
T 4gq1_A 257 LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS 336 (393)
T ss_dssp CSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET
T ss_pred ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC
Confidence 124678889999999997643221110 000111122223345543 444677888
Q ss_pred CCCcEEEEeCCCCccee--EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 186 GDKTVRIWDARTQKSQI--IATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 186 ~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.||.|++||+.+++... ..+...+.+++|+|||++||+++.+| +.+|.+.
T Consensus 337 ~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 337 QHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 99999999999887532 34456789999999999999999666 5666543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=194.87 Aligned_cols=193 Identities=21% Similarity=0.290 Sum_probs=155.3
Q ss_pred ccccccCCCCEEEEEECCC-CCeEEEEECCCcEEEEEeccCCCC--cccEEEecccccEEeEEEecCCCCeEEEEeCCCc
Q psy9316 44 IKEYQAHGSKVHSVAWSCD-GRRLASGSFDKSVAIFALDKKGDL--NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 120 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~v~~~~~~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~ 120 (264)
..++++|.+.|++|+|+|+ +++|++||.|++|++|++...... .....+.+|...|.+++|+|++ .++++++.|+.
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~ 109 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGT 109 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-CEEEEEccccc
Confidence 4468999999999999997 689999999999999998754322 1224567899999999999854 78999999999
Q ss_pred EEEEECCCCCc-------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCC-CCE
Q psy9316 121 VRIWDARTQKS-------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN-PDL 180 (264)
Q Consensus 121 i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~-~~~ 180 (264)
|++|+...... ...+++++.|+.+.+|+..... .......+|...+..++|++.. ..+
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC--KYTVQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--EEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc--eEEEEeccccCcccceEEccCCCCcE
Confidence 99999876432 1247889999999999864321 1222345788899999998764 357
Q ss_pred EEEEeCCCcEEEEeCCCCcceeE--eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 181 LSTASGDKTVRIWDARTQKSQII--ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 181 i~s~~~dg~i~iwD~~t~~~~~~--~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
+++++.|+.|++||+++.+.... .+.+.+.+++|+|++++|++|+.|+.|++||++...
T Consensus 188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence 88999999999999998875332 345678999999999999999999999999987643
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=200.56 Aligned_cols=224 Identities=18% Similarity=0.268 Sum_probs=177.5
Q ss_pred ceEeecCCCCCce-EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEe
Q psy9316 4 PVIQFHTPKSPEY-KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFAL 80 (264)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~ 80 (264)
+...|.++..+-. .+.+.+ ...++++.|+.+++|+. .+.+..+.+|.+.|.+++|+|++ +|++|+.||+|++|++
T Consensus 113 ~~~~l~~h~~~v~~~~~~~~-~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFED-NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEEECCSSSCEEEEEEET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred ceEEEcCCCCCcEEEEEECC-CEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence 3445665555433 333444 46778999999999975 45677888999999999999988 9999999999999998
Q ss_pred ccCCCCcccEEEecccccEEeEEEecC-CCCeEEEEeCCCcEEEEECCCCCcc---------------------------
Q psy9316 81 DKKGDLNKEVVYRGHTGSVDQLCWHAT-NPDLLSTASGDKTVRIWDARTQKSQ--------------------------- 132 (264)
Q Consensus 81 ~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~--------------------------- 132 (264)
... .....+.+|...|.+++|.+. +..++++++.||.|++||+++....
T Consensus 191 ~~~---~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 191 KKG---CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp TTT---EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred CCC---cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 642 233457789999999999863 4478999999999999999865311
Q ss_pred -------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q psy9316 133 -------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 199 (264)
Q Consensus 133 -------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~ 199 (264)
..+++++.|+.|.+|+++... ....+.+|...|.+++|+|+ +.++++++.||.|++||+++++
T Consensus 268 ~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK---CLYILSGHTDRIYSTIYDHE-RKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTE
T ss_pred CccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc---EEEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc
Confidence 257889999999999986432 23456789999999999985 5688999999999999999887
Q ss_pred ceeE--eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 200 SQII--ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 200 ~~~~--~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
.... .+...+.+++|+ +++|++|+.|+.|++||+++.
T Consensus 344 ~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 344 LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCC
Confidence 5332 345567888887 689999999999999998764
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-25 Score=188.33 Aligned_cols=207 Identities=18% Similarity=0.363 Sum_probs=157.4
Q ss_pred EEeecCceEEecccc--cccccc--ccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCC----------------
Q psy9316 27 LVCKIDDYVKHFNTH--NDIKEY--QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDL---------------- 86 (264)
Q Consensus 27 ~~~~~d~~~~~~~~~--~~~~~~--~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~---------------- 86 (264)
+..+.|+.|++|+.. +.++.+ .+|...|.+++|+|++++|++|+.||+|++|++......
T Consensus 39 lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~ 118 (318)
T 4ggc_A 39 LAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN 118 (318)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE
T ss_pred EEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC
Confidence 445679999999753 445554 467788999999999999999999999999997642100
Q ss_pred ----------------------cccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc------------
Q psy9316 87 ----------------------NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ------------ 132 (264)
Q Consensus 87 ----------------------~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------------ 132 (264)
.....+.+|...+..+.+.+.+ .++++++.||.|++||+++++..
T Consensus 119 ~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 197 (318)
T 4ggc_A 119 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197 (318)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCS
T ss_pred CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCC
Confidence 0112245677888888888754 68899999999999999864311
Q ss_pred --------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEE-EEeCCCcEEEEeCCC
Q psy9316 133 --------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS-TASGDKTVRIWDART 197 (264)
Q Consensus 133 --------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~-s~~~dg~i~iwD~~t 197 (264)
..+++++.++.|++|+...... .....+...+..+.|+|.+..+++ +++.||.|++||+++
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~ 273 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC----LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 273 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE----EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc----cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC
Confidence 1245678889999999764322 233456678999999987655543 344799999999999
Q ss_pred Cccee--EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 198 QKSQI--IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 198 ~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
++... ..+.+.+.+++|+|+|++|++|+.|+.|++||+.+.
T Consensus 274 ~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 274 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 87532 345677999999999999999999999999998764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-27 Score=212.45 Aligned_cols=205 Identities=8% Similarity=0.075 Sum_probs=156.7
Q ss_pred EEeecCceEEecccccc------ccccccCCCCEEEEEECCC------CCeEEEEECCCcEEEEEeccCCCC--------
Q psy9316 27 LVCKIDDYVKHFNTHND------IKEYQAHGSKVHSVAWSCD------GRRLASGSFDKSVAIFALDKKGDL-------- 86 (264)
Q Consensus 27 ~~~~~d~~~~~~~~~~~------~~~~~~h~~~V~~l~~s~~------g~~l~s~s~dg~i~v~~~~~~~~~-------- 86 (264)
.+++.|+.|++|+.... ...+.+|.+.|.+++|+|+ +.+|++++.||+|++|++......
T Consensus 177 aS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~ 256 (524)
T 2j04_B 177 DKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE 256 (524)
T ss_dssp -----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCC
T ss_pred ccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeec
Confidence 45677999999975322 1235678899999999997 579999999999999998653211
Q ss_pred cccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc----------------------c-eEEEeecCCCc
Q psy9316 87 NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS----------------------Q-IMLASGSFDKS 143 (264)
Q Consensus 87 ~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------------------~-~~~~~~~~d~~ 143 (264)
.....+.+|...|.+++|++. ..|++|+.||+|++||++++.. . .++++++.|++
T Consensus 257 ~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t 334 (524)
T 2j04_B 257 KPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY 334 (524)
T ss_dssp SCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE
T ss_pred CceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe
Confidence 112356789999999999873 4799999999999999975321 1 35788999999
Q ss_pred EEEEEeccCCCccceEEEecccc--ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEeecCceEEEEEcCCCC
Q psy9316 144 VAIFALDKKGDLNKEVVYRGHTG--SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIATKGENINITWAPNGN 219 (264)
Q Consensus 144 i~i~~~~~~~~~~~~~~~~~h~~--~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~~~~~~~~v~~sp~g~ 219 (264)
|+|||++.... ...+.+|.. .|.+++|+|+ ...+++++.|++|++||+++... .+..+.+.+.+|+|||+|+
T Consensus 335 vklWD~~~~~~---~~~~~~~~~~~~v~~v~fsp~-~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~ 410 (524)
T 2j04_B 335 FYIFNPKDIAT---TKTTVSRFRGSNLVPVVYCPQ-IYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP 410 (524)
T ss_dssp EEEECGGGHHH---HCEEEEECSCCSCCCEEEETT-TTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCC
T ss_pred EEEEECCCCCc---ccccccccccCcccceEeCCC-cCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCC
Confidence 99999864321 123345543 4788999996 45788999999999999998764 3345667899999999999
Q ss_pred EEEEeeCCCeEEEEEccc
Q psy9316 220 TIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 220 ~la~gs~d~~i~~~d~~~ 237 (264)
+|++|+.|+.|++||+..
T Consensus 411 ~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 411 MVLAGSADGSLIITNAAR 428 (524)
T ss_dssp BCEEEETTTEEECCBSCS
T ss_pred eEEEEECCCEEEEEechH
Confidence 999999999999999754
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-26 Score=194.71 Aligned_cols=235 Identities=13% Similarity=0.112 Sum_probs=180.8
Q ss_pred CceEeecCCCeeEEEeecCceEEecccccc-----ccccccCCCCEEEEEECCCCC-eEEEEECCCcEEEEEe-ccCCCC
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTHND-----IKEYQAHGSKVHSVAWSCDGR-RLASGSFDKSVAIFAL-DKKGDL 86 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~h~~~V~~l~~s~~g~-~l~s~s~dg~i~v~~~-~~~~~~ 86 (264)
....+.|.+. ++++++.|+.+++|+.... ...+.+|...|.+++|+|+++ +|++|+.||.|++|++ ... .
T Consensus 15 ~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~- 91 (342)
T 1yfq_A 15 SDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP-S- 91 (342)
T ss_dssp EEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS-S-
T ss_pred EEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC-c-
Confidence 3346777665 5578899999999976422 455668999999999999999 9999999999999998 542 2
Q ss_pred cccEEEec--ccccEEeEEEecCCCCeEEEEeCCCcEEEEECCC---------CCc----------------ceEEEeec
Q psy9316 87 NKEVVYRG--HTGSVDQLCWHATNPDLLSTASGDKTVRIWDART---------QKS----------------QIMLASGS 139 (264)
Q Consensus 87 ~~~~~~~~--h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~---------~~~----------------~~~~~~~~ 139 (264)
...+.+ |...|.+++|+| +.++++++.|+.|++||+++ .+. ...+++++
T Consensus 92 --~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 167 (342)
T 1yfq_A 92 --FQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGM 167 (342)
T ss_dssp --EEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEE
T ss_pred --eEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEe
Confidence 244667 999999999998 57899999999999999875 321 01377889
Q ss_pred CCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCC------ccee--EeecC----
Q psy9316 140 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ------KSQI--IATKG---- 207 (264)
Q Consensus 140 ~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~------~~~~--~~~~~---- 207 (264)
.|+.|.+|+++.............|...+.+++|+|.++.++++++.||.|++||++.. .... ..+..
T Consensus 168 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
T 1yfq_A 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247 (342)
T ss_dssp STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC
T ss_pred CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccc
Confidence 99999999987622222222345678899999999823468899999999999999876 3322 22222
Q ss_pred -----ceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCccc-ceeeeeec
Q psy9316 208 -----ENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGH-LMETRSLW 259 (264)
Q Consensus 208 -----~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h-~~~~~~~~ 259 (264)
.+.+++|+|++++|++|+.|+.|++||+..+.. ..++.+| ...+.++-
T Consensus 248 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK----IKNFAKFNEDSVVKIA 301 (342)
T ss_dssp CSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE----EEECCCCSSSEEEEEE
T ss_pred cccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH----hhhhhcccCCCceEec
Confidence 688999999999999999999999999875432 3456777 77777653
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-25 Score=187.55 Aligned_cols=211 Identities=19% Similarity=0.239 Sum_probs=173.1
Q ss_pred eEeecCCCeeEEEeecCceEEeccccc----cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEE
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTHN----DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~ 91 (264)
..+.|.+. ..++++.|+.+++|+... ....+..|...|.+++|+|++++|++++.|+.|++|++... .....
T Consensus 103 ~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~---~~~~~ 178 (337)
T 1gxr_A 103 CKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---TLVRQ 178 (337)
T ss_dssp EEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEE
T ss_pred EEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---ceeee
Confidence 36666554 567788999999997643 34567789999999999999999999999999999998642 23345
Q ss_pred EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc------------------ceEEEeecCCCcEEEEEeccCC
Q psy9316 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS------------------QIMLASGSFDKSVAIFALDKKG 153 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~------------------~~~~~~~~~d~~i~i~~~~~~~ 153 (264)
+..|...+.+++|+|++ .++++++.||.|++||+++++. ...+++++.++.+.+|+++...
T Consensus 179 ~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~ 257 (337)
T 1gxr_A 179 FQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD 257 (337)
T ss_dssp ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred eecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC
Confidence 67899999999999955 7888999999999999987542 1257788899999999986532
Q ss_pred CccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE-eecCceEEEEEcCCCCEEEEeeCCCeEEE
Q psy9316 154 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII-ATKGENINITWAPNGNTIAVGNKEDLVTF 232 (264)
Q Consensus 154 ~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~gs~d~~i~~ 232 (264)
...+..|...|..++|+|+ +.++++++.||.|++||+++++.... .+...+.+++|+|++++|++++.|+.|++
T Consensus 258 ----~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 332 (337)
T 1gxr_A 258 ----KYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332 (337)
T ss_dssp ----EEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred ----eEEEcCCccceeEEEECCC-CCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEE
Confidence 2356788999999999985 56889999999999999999876433 34567889999999999999999999999
Q ss_pred EEcc
Q psy9316 233 IDVV 236 (264)
Q Consensus 233 ~d~~ 236 (264)
||+.
T Consensus 333 w~~~ 336 (337)
T 1gxr_A 333 YEVI 336 (337)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9974
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-25 Score=187.95 Aligned_cols=216 Identities=13% Similarity=0.172 Sum_probs=168.7
Q ss_pred eEeecCCCeeEEEeecCceEEeccccc-----cccccc--cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcc
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTHN-----DIKEYQ--AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK 88 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~~~~~--~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~ 88 (264)
..+.|.+. +.++++ |+.+++|+... .+..+. .|...|.+++|+|++++|++++.|+.|++|++.... ...
T Consensus 57 ~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~ 133 (337)
T 1gxr_A 57 VTISNPTR-HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-PRI 133 (337)
T ss_dssp EEECSSSS-EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---EE
T ss_pred EEEecCCc-EEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC-cce
Confidence 36666554 455666 99999997643 222333 789999999999999999999999999999987532 223
Q ss_pred cEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEe
Q psy9316 89 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFAL 149 (264)
Q Consensus 89 ~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~ 149 (264)
...+..|...|.+++|+|+ ++++++++.||.|++||+++++. ...+++++.|+.+.+|++
T Consensus 134 ~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 212 (337)
T 1gxr_A 134 KAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212 (337)
T ss_dssp EEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eeecccCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEEC
Confidence 3456789999999999985 47888999999999999987532 125788889999999998
Q ss_pred ccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-EeecCceEEEEEcCCCCEEEEeeCCC
Q psy9316 150 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATKGENINITWAPNGNTIAVGNKED 228 (264)
Q Consensus 150 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~~~~~~v~~sp~g~~la~gs~d~ 228 (264)
+.... .....|...+..++|+|+ +.++++++.||.|++||+++.+... ..+...+.+++|+|++++|++++.|+
T Consensus 213 ~~~~~----~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 213 REGRQ----LQQHDFTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp TTTEE----EEEEECSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCce----EeeecCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCC
Confidence 65322 122356788999999985 5788899999999999999877532 33456788999999999999999999
Q ss_pred eEEEEEcccCCC
Q psy9316 229 LVTFIDVVKSLP 240 (264)
Q Consensus 229 ~i~~~d~~~~~~ 240 (264)
.+++||+..+..
T Consensus 288 ~i~~~~~~~~~~ 299 (337)
T 1gxr_A 288 LLNAWRTPYGAS 299 (337)
T ss_dssp EEEEEETTTCCE
T ss_pred cEEEEECCCCeE
Confidence 999999876443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-26 Score=194.54 Aligned_cols=219 Identities=14% Similarity=0.247 Sum_probs=168.4
Q ss_pred eEeecCC--CeeEEEeecCceEEecccc--c-cccccccCCCCEEEEE------ECCCCCeEEEEECCCcEEEEEeccCC
Q psy9316 16 YKLLPSG--SQFHLVCKIDDYVKHFNTH--N-DIKEYQAHGSKVHSVA------WSCDGRRLASGSFDKSVAIFALDKKG 84 (264)
Q Consensus 16 ~~~~~~~--~~~~~~~~~d~~~~~~~~~--~-~~~~~~~h~~~V~~l~------~s~~g~~l~s~s~dg~i~v~~~~~~~ 84 (264)
..+.|.+ +.+.++++.|+.+++|+.. + .+..+.+|.+.|.++. |+|++++|++++.|+.|++|++....
T Consensus 71 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~ 150 (357)
T 3i2n_A 71 GTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD 150 (357)
T ss_dssp EECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS
T ss_pred EEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC
Confidence 3566653 4567789999999999764 3 5678889999999995 47899999999999999999987543
Q ss_pred CCcccEEEecccc----cEEeEE----EecCCCCeEEEEeCCCcEEEEECCCCC---------------------cceEE
Q psy9316 85 DLNKEVVYRGHTG----SVDQLC----WHATNPDLLSTASGDKTVRIWDARTQK---------------------SQIML 135 (264)
Q Consensus 85 ~~~~~~~~~~h~~----~v~~i~----~~~~~~~~l~s~s~dg~i~vwd~~~~~---------------------~~~~~ 135 (264)
.. ...+..|.+ .+.+++ |+| ++.++++++.||.|++||+++.+ ....+
T Consensus 151 ~~--~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 227 (357)
T 3i2n_A 151 DP--VANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKL 227 (357)
T ss_dssp SC--SEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEE
T ss_pred Cc--ceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEE
Confidence 22 233444443 788888 455 45789999999999999998753 22467
Q ss_pred EeecCCCcEEEEEeccCCCccce--EEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce------------
Q psy9316 136 ASGSFDKSVAIFALDKKGDLNKE--VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ------------ 201 (264)
Q Consensus 136 ~~~~~d~~i~i~~~~~~~~~~~~--~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~------------ 201 (264)
++++.|+.|.+|+++........ ....+|...|.+++|+|++..++++++.||.|++||+++....
T Consensus 228 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~ 307 (357)
T 3i2n_A 228 VATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV 307 (357)
T ss_dssp EEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred EEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence 88899999999998764333221 1334899999999999976558999999999999999864321
Q ss_pred ---------eEeecCceEEEEEcCCCCEEE-EeeCCCeEEEEEccc
Q psy9316 202 ---------IIATKGENINITWAPNGNTIA-VGNKEDLVTFIDVVK 237 (264)
Q Consensus 202 ---------~~~~~~~~~~v~~sp~g~~la-~gs~d~~i~~~d~~~ 237 (264)
...+...+.+++|+|+|++|+ +|+.|+.|++||+.+
T Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 308 AGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp CCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred ccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 122345688999999999998 799999999999875
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=217.72 Aligned_cols=221 Identities=24% Similarity=0.345 Sum_probs=178.0
Q ss_pred eEeecCCCeeEEEeecCceEEecccc----ccccccccCCCCEEEEEECCC--CCeEEEEECCCcEEEEEeccCCCCccc
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTH----NDIKEYQAHGSKVHSVAWSCD--GRRLASGSFDKSVAIFALDKKGDLNKE 89 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~h~~~V~~l~~s~~--g~~l~s~s~dg~i~v~~~~~~~~~~~~ 89 (264)
..+.|.+. ..++++.|+.+++|+.. ..+..+.+|.+.|.+++|+|+ +++|++|+.||.|++|++... .....
T Consensus 15 l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-~~~~~ 92 (753)
T 3jro_A 15 AVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-RWSQI 92 (753)
T ss_dssp ECCCSSSC-CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-EEEEE
T ss_pred EEECCCCC-eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-ccccc
Confidence 35556664 56788899999999753 456778899999999999988 999999999999999998752 22233
Q ss_pred EEEecccccEEeEEEecCC-CCeEEEEeCCCcEEEEECCCCCc----------------------------------ceE
Q psy9316 90 VVYRGHTGSVDQLCWHATN-PDLLSTASGDKTVRIWDARTQKS----------------------------------QIM 134 (264)
Q Consensus 90 ~~~~~h~~~v~~i~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~----------------------------------~~~ 134 (264)
..+..|...|.+++|+|+. +.++++|+.||.|++||++.... ...
T Consensus 93 ~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~ 172 (753)
T 3jro_A 93 AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 172 (753)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCC
T ss_pred ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCE
Confidence 4567899999999999963 57899999999999999976511 235
Q ss_pred EEeecCCCcEEEEEeccCCCc-cceEEEeccccceeeEEEcCCC--CCEEEEEeCCCcEEEEeCCCCcc----e---eEe
Q psy9316 135 LASGSFDKSVAIFALDKKGDL-NKEVVYRGHTGSVDQLCWHATN--PDLLSTASGDKTVRIWDARTQKS----Q---IIA 204 (264)
Q Consensus 135 ~~~~~~d~~i~i~~~~~~~~~-~~~~~~~~h~~~i~~i~~~~~~--~~~i~s~~~dg~i~iwD~~t~~~----~---~~~ 204 (264)
+++|+.|+.|.+|+++..... .....+.+|..+|.+++|+|++ +.++++++.||.|++||+++... . ...
T Consensus 173 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 252 (753)
T 3jro_A 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK 252 (753)
T ss_dssp EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSC
T ss_pred EEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCC
Confidence 788899999999999765433 2234567899999999999974 68999999999999999998641 1 112
Q ss_pred ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 205 TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 205 ~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
+...+.+++|+|+|+++++|+.||.|++||++.+
T Consensus 253 ~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 253 FPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 3456788999999999999999999999998853
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=205.26 Aligned_cols=220 Identities=15% Similarity=0.161 Sum_probs=164.0
Q ss_pred ceEeecCCCeeEEEeecCceEEeccccc----cccccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCccc
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTHN----DIKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNKE 89 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~~ 89 (264)
-..+.|+...++++++.||.|++|+... .+..+.+|.+.|.+|+|+| ++++|++|+.||+|++||+... ...
T Consensus 124 ~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~-~~~-- 200 (435)
T 4e54_B 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN-ILR-- 200 (435)
T ss_dssp EEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC-EEE--
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC-cee--
Confidence 3477788777788899999999997532 3345678999999999998 7899999999999999998631 111
Q ss_pred EEEe--cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEE
Q psy9316 90 VVYR--GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFA 148 (264)
Q Consensus 90 ~~~~--~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~ 148 (264)
.... .+...+.+++|+|++ .++++|+.||.|++||++.... ..++++++.|+.|.+||
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd 279 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD 279 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEE
T ss_pred EEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEe
Confidence 1122 234457889999854 7899999999999999875321 12578899999999999
Q ss_pred eccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--ec------CceEEEEEcCCCCE
Q psy9316 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--TK------GENINITWAPNGNT 220 (264)
Q Consensus 149 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~~------~~~~~v~~sp~g~~ 220 (264)
++............+|...|.+++|+|+ +.+|++++.||.|+|||+++....... +. .....+.|+|++.+
T Consensus 280 ~~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (435)
T 4e54_B 280 LRQVRGKASFLYSLPHRHPVNAACFSPD-GARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNL 358 (435)
T ss_dssp TTTCCSSSCCSBCCBCSSCEEECCBCTT-SSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSC
T ss_pred cccccccceEEEeeeccccccceeECCC-CCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCE
Confidence 8765433333334678999999999985 578999999999999999987643221 11 12345677787777
Q ss_pred EEEee------------CCCeEEEEEcccCC
Q psy9316 221 IAVGN------------KEDLVTFIDVVKSL 239 (264)
Q Consensus 221 la~gs------------~d~~i~~~d~~~~~ 239 (264)
++++. .++.|++||+..+.
T Consensus 359 ~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~ 389 (435)
T 4e54_B 359 IVVGRYPDPNFKSCTPYELRTIDVFDGNSGK 389 (435)
T ss_dssp EEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred EEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence 77664 34579999987643
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=205.37 Aligned_cols=193 Identities=17% Similarity=0.217 Sum_probs=151.9
Q ss_pred ccccccc-ccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEecc---CCCCcccEEEecccccEEeEEEecCCCCeEEEE
Q psy9316 41 HNDIKEY-QAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDK---KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA 115 (264)
Q Consensus 41 ~~~~~~~-~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~---~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~ 115 (264)
.+.+..+ .+|.+.|.+++|+| ++++|++|+.||+|++|++.. .........+ .|...|.+++|+| ++.+++++
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~-~~~~l~s~ 129 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIP-NFDAFAVS 129 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECT-TSSEEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeC-CCCEEEEE
Confidence 3456677 78999999999999 999999999999999999875 2212222223 5999999999998 44789999
Q ss_pred eCCCcEEEEECC---CC---------------------------------CcceEEEeecCCCcEEEEEeccCCCccceE
Q psy9316 116 SGDKTVRIWDAR---TQ---------------------------------KSQIMLASGSFDKSVAIFALDKKGDLNKEV 159 (264)
Q Consensus 116 s~dg~i~vwd~~---~~---------------------------------~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~ 159 (264)
+.||.|++||++ .+ .....+++++.|+.|.+|+++.... ..
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~ 206 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER---LQ 206 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE---EE
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee---eE
Confidence 999999999984 11 1134688899999999999865432 23
Q ss_pred EEec--cccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe---ecCceEEEEEc----CCCCEEEEeeCCCeE
Q psy9316 160 VYRG--HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA---TKGENINITWA----PNGNTIAVGNKEDLV 230 (264)
Q Consensus 160 ~~~~--h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~---~~~~~~~v~~s----p~g~~la~gs~d~~i 230 (264)
.+.. |...|.+++|+|+ +.+|++++.||.|++||+++++..... +...+.+++|+ |++++|++|+.|+.|
T Consensus 207 ~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 207 IIENSPRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp EEECCGGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred EEccCCCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 4455 8899999999985 678999999999999999987653322 23357788555 578899999999999
Q ss_pred EEEEcccCC
Q psy9316 231 TFIDVVKSL 239 (264)
Q Consensus 231 ~~~d~~~~~ 239 (264)
++||++.+.
T Consensus 286 ~iwd~~~~~ 294 (437)
T 3gre_A 286 TIWNFVKGH 294 (437)
T ss_dssp EEEETTTTE
T ss_pred EEEEcCCCc
Confidence 999987543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-25 Score=187.31 Aligned_cols=235 Identities=17% Similarity=0.150 Sum_probs=177.2
Q ss_pred eecCCCCCc--eEeecCCCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEecc
Q psy9316 7 QFHTPKSPE--YKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDK 82 (264)
Q Consensus 7 ~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~ 82 (264)
.|.++..+- ..+ |.+. ..++++.|+.+++|+.. .....+..|.+.|.+++|+|++++|++++.|+.|++|++..
T Consensus 13 ~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 90 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFA 90 (313)
T ss_dssp EECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTC
T ss_pred HhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeee
Confidence 344444433 244 5554 46789999999999753 45667889999999999999999999999999999999876
Q ss_pred CCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC------------------cceEEEeecCCCcE
Q psy9316 83 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK------------------SQIMLASGSFDKSV 144 (264)
Q Consensus 83 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~------------------~~~~~~~~~~d~~i 144 (264)
.........+..|...|.+++|. +.++++++.||.|++||..... ....+++++.|+.+
T Consensus 91 ~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 167 (313)
T 3odt_A 91 TSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTI 167 (313)
T ss_dssp CTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCE
T ss_pred cCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCE
Confidence 44333345577899999999994 4689999999999999932210 12257888999999
Q ss_pred EEEEeccCCCccceEEEec-cccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--EeecCceEEEEEcCCCCEE
Q psy9316 145 AIFALDKKGDLNKEVVYRG-HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IATKGENINITWAPNGNTI 221 (264)
Q Consensus 145 ~i~~~~~~~~~~~~~~~~~-h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~l 221 (264)
.+|+.. .....+.. |...+.+++|+|.+. +++++.||.|++||+++.+... ..+...+.+++|+|++ .|
T Consensus 168 ~i~d~~-----~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 239 (313)
T 3odt_A 168 KLWQND-----KVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DI 239 (313)
T ss_dssp EEEETT-----EEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CE
T ss_pred EEEecC-----ceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CE
Confidence 999832 12233444 888999999998653 8899999999999999887533 2355678999999999 68
Q ss_pred EEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 222 AVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 222 a~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
++++.|+.|++||++.+.. ..+..+|...+.++
T Consensus 240 ~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~i~~~ 272 (313)
T 3odt_A 240 VSCGEDRTVRIWSKENGSL----KQVITLPAISIWSV 272 (313)
T ss_dssp EEEETTSEEEEECTTTCCE----EEEEECSSSCEEEE
T ss_pred EEEecCCEEEEEECCCCce----eEEEeccCceEEEE
Confidence 8999999999999876432 23445565555543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-26 Score=198.66 Aligned_cols=207 Identities=19% Similarity=0.356 Sum_probs=163.6
Q ss_pred eecCceEEecccc------ccccccccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCC----cccEEEecccc
Q psy9316 29 CKIDDYVKHFNTH------NDIKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDL----NKEVVYRGHTG 97 (264)
Q Consensus 29 ~~~d~~~~~~~~~------~~~~~~~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~----~~~~~~~~h~~ 97 (264)
++.++.+++|+.. ..+..+.+|.+.|.+++|+| ++++|++|+.||.|++|++...+.. .....+.+|..
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~ 132 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC
Confidence 6779999999753 24556789999999999999 9999999999999999998764321 23355788999
Q ss_pred cEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc---------------------eEEEeecCCCcEEEEEeccCCCcc
Q psy9316 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ---------------------IMLASGSFDKSVAIFALDKKGDLN 156 (264)
Q Consensus 98 ~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---------------------~~~~~~~~d~~i~i~~~~~~~~~~ 156 (264)
.|.+++|+|++.+++++++.||.|++||+++++.. ..+++++.|+.|.+|+++...
T Consensus 133 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--- 209 (402)
T 2aq5_A 133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT--- 209 (402)
T ss_dssp CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---
T ss_pred eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc---
Confidence 99999999987679999999999999998765321 146788899999999986532
Q ss_pred ceEEE-eccccc-eeeEEEcCCCCCEEEEE---eCCCcEEEEeCCCCcc-e-eE--eecCceEEEEEcCCCCEEE-EeeC
Q psy9316 157 KEVVY-RGHTGS-VDQLCWHATNPDLLSTA---SGDKTVRIWDARTQKS-Q-II--ATKGENINITWAPNGNTIA-VGNK 226 (264)
Q Consensus 157 ~~~~~-~~h~~~-i~~i~~~~~~~~~i~s~---~~dg~i~iwD~~t~~~-~-~~--~~~~~~~~v~~sp~g~~la-~gs~ 226 (264)
....+ ..|... +..+.|+|+ +.+++++ +.|+.|++||+++... . .. .....+.+++|+|++++|+ +|+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~ 288 (402)
T 2aq5_A 210 VVAEKDRPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG 288 (402)
T ss_dssp EEEEEECSSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT
T ss_pred eeeeeccCCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC
Confidence 22234 567665 889999985 5688888 6899999999998653 1 12 2344578999999999996 4557
Q ss_pred CCeEEEEEcccCC
Q psy9316 227 EDLVTFIDVVKSL 239 (264)
Q Consensus 227 d~~i~~~d~~~~~ 239 (264)
|+.|++||+..+.
T Consensus 289 dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 289 DSSIRYFEITSEA 301 (402)
T ss_dssp CSCEEEEEECSST
T ss_pred CCeEEEEEecCCC
Confidence 9999999998654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-26 Score=213.03 Aligned_cols=216 Identities=21% Similarity=0.334 Sum_probs=162.8
Q ss_pred CceEeecCCCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEE
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~ 91 (264)
....+.|.+. ++++++.|+.+++|+.. ..++.+.+|.+.|.+++|+|++++|++|+.|++|++|++...........
T Consensus 434 ~~v~~s~~g~-~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 512 (694)
T 3dm0_A 434 EDVVLSSDGQ-FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG 512 (694)
T ss_dssp EEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred EEEEECCCCC-EEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC
Confidence 4446666664 56789999999999764 45678899999999999999999999999999999998642111000001
Q ss_pred EecccccEEeEEEecCC-CCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEecc
Q psy9316 92 YRGHTGSVDQLCWHATN-PDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFALDK 151 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~ 151 (264)
..+|...|.+++|+|.+ ...+++++.|+.|++||+++.+. ...+++++.|+.|++|+++.
T Consensus 513 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 513 GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 23688899999999865 35789999999999999987542 12578999999999999865
Q ss_pred CCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee------------------c---CceE
Q psy9316 152 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT------------------K---GENI 210 (264)
Q Consensus 152 ~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~------------------~---~~~~ 210 (264)
.... ....+...|.+++|+|+ +.+++++ .++.|++||++++....... . ..+.
T Consensus 593 ~~~~----~~~~~~~~v~~~~~sp~-~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (694)
T 3dm0_A 593 GKKL----YSLEANSVIHALCFSPN-RYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCT 666 (694)
T ss_dssp TEEE----ECCBCSSCEEEEEECSS-SSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEE
T ss_pred CceE----EEecCCCcEEEEEEcCC-CcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEee
Confidence 4321 11234568999999985 4566554 56779999999876422110 0 0246
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 211 NITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 211 ~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
+++|+|+|++|++|+.|+.|++||+.
T Consensus 667 ~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 667 SLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 79999999999999999999999975
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-25 Score=193.26 Aligned_cols=222 Identities=21% Similarity=0.382 Sum_probs=175.5
Q ss_pred EEeecCceEEecccc--cccccc--ccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeE
Q psy9316 27 LVCKIDDYVKHFNTH--NDIKEY--QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 102 (264)
Q Consensus 27 ~~~~~d~~~~~~~~~--~~~~~~--~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i 102 (264)
+..+.|+.|++|+.. +..+.+ .+|.+.|++++|+|+|++|++|+.||+|++|++... .....+.+|...+.++
T Consensus 119 lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~---~~~~~~~~h~~~v~~~ 195 (420)
T 4gga_A 119 LAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRLRNMTSHSARVGSL 195 (420)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEE
T ss_pred EEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC---cEEEEEeCCCCceEEE
Confidence 445679999999764 344444 467788999999999999999999999999998642 2334577899999999
Q ss_pred EEecCCCCeEEEEeCCCcEEEEECCCCCc--------------------ceEEEeecCCCcEEEEEeccCCCc-cceEEE
Q psy9316 103 CWHATNPDLLSTASGDKTVRIWDARTQKS--------------------QIMLASGSFDKSVAIFALDKKGDL-NKEVVY 161 (264)
Q Consensus 103 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------------~~~~~~~~~d~~i~i~~~~~~~~~-~~~~~~ 161 (264)
+|+ +.++++|+.|+.+++||.+.... ...+++++.|+.+.+|+....... ......
T Consensus 196 s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~ 272 (420)
T 4gga_A 196 SWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF 272 (420)
T ss_dssp EEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEE
T ss_pred eeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeee
Confidence 885 36899999999999999876432 125788999999999998654322 223456
Q ss_pred eccccceeeEEEcCCCCCEEEEE--eCCCcEEEEeCCCCcceeE-eecCceEEEEEcCCCCEEEEee--CCCeEEEEEcc
Q psy9316 162 RGHTGSVDQLCWHATNPDLLSTA--SGDKTVRIWDARTQKSQII-ATKGENINITWAPNGNTIAVGN--KEDLVTFIDVV 236 (264)
Q Consensus 162 ~~h~~~i~~i~~~~~~~~~i~s~--~~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~gs--~d~~i~~~d~~ 236 (264)
..|...|.+++|+|.+..+++++ +.|++|++||++++..... .....+.++.|+|+++.+++++ .|+.|++||+.
T Consensus 273 ~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~ 352 (420)
T 4gga_A 273 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP 352 (420)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence 78889999999999888888764 4799999999999876433 3455688899999999998765 78999999987
Q ss_pred cCCCCCCCcccCcccceeeeee
Q psy9316 237 KSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 237 ~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
++ +...+++||...|.+|
T Consensus 353 ~~----~~v~~l~gH~~~V~~l 370 (420)
T 4gga_A 353 TM----AKVAELKGHTSRVLSL 370 (420)
T ss_dssp TC----CEEEEECCCSSCEEEE
T ss_pred CC----cEEEEEcCCCCCEEEE
Confidence 54 3456788999888876
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-24 Score=186.66 Aligned_cols=230 Identities=13% Similarity=0.186 Sum_probs=181.7
Q ss_pred eEeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR 93 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~ 93 (264)
..+.|.+. ++++++.|+.+++|+. .+.+..+.+|.+.|.+++|+|++++|++++.|+.|++|++.... ....+.
T Consensus 38 ~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~ 113 (369)
T 3zwl_B 38 VKYNKEGD-LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ---CVATWK 113 (369)
T ss_dssp EEECTTSC-EEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC---EEEEEE
T ss_pred EEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---EEEEee
Confidence 36667654 5678899999999964 46677888999999999999999999999999999999986532 222333
Q ss_pred cccccEEeEEEecCCCCeEEEEeCC-----CcEEEEECCCCCc--------------------------------ceEEE
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTASGD-----KTVRIWDARTQKS--------------------------------QIMLA 136 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~--------------------------------~~~~~ 136 (264)
+...+.+++|+|++ .++++++.+ |.+++||++.... ...++
T Consensus 114 -~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 191 (369)
T 3zwl_B 114 -SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYII 191 (369)
T ss_dssp -CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEE
T ss_pred -cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEE
Confidence 78899999999955 688888888 9999999875421 12578
Q ss_pred eecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE-eecCceEEEEEc
Q psy9316 137 SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII-ATKGENINITWA 215 (264)
Q Consensus 137 ~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~s 215 (264)
+++.|+.|.+|+++... .....+..|...|.+++|+|+ +.+|++++.||.|++||+++.+.... .....+..++|+
T Consensus 192 ~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 268 (369)
T 3zwl_B 192 AGHKDGKISKYDVSNNY--EYVDSIDLHEKSISDMQFSPD-LTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVIT 268 (369)
T ss_dssp EEETTSEEEEEETTTTT--EEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred EEcCCCEEEEEECCCCc--EeEEEEecCCCceeEEEECCC-CCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEec
Confidence 88999999999986532 223456778899999999985 57889999999999999999875333 345668899999
Q ss_pred CCCCEEEEeeCCC--------------eEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 216 PNGNTIAVGNKED--------------LVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 216 p~g~~la~gs~d~--------------~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
|+++++++++.++ .+++||+..+. ......+|...++++
T Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~v~~~ 321 (369)
T 3zwl_B 269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE----EIGRVQGHFGPLNTV 321 (369)
T ss_dssp SSSSEEEEEECCC-------------CEEEEEETTTCC----EEEEEECCSSCEEEE
T ss_pred CCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc----chhheecccCcEEEE
Confidence 9999999999998 89999976543 334556777666654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=194.56 Aligned_cols=221 Identities=22% Similarity=0.343 Sum_probs=172.5
Q ss_pred EEEeecCceEEecccc--cccccccc-CCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeE
Q psy9316 26 HLVCKIDDYVKHFNTH--NDIKEYQA-HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 102 (264)
Q Consensus 26 ~~~~~~d~~~~~~~~~--~~~~~~~~-h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i 102 (264)
.++++.|+.+++|+.. +....+.. |.+.|.+++|+|++++|++|+.||.|++|++... .....+.+|...|.++
T Consensus 106 l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~ 182 (401)
T 4aez_A 106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ---TKLRTMAGHQARVGCL 182 (401)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEE
T ss_pred EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC---eEEEEecCCCCceEEE
Confidence 5678899999999763 34444444 8899999999999999999999999999998643 2234567899999999
Q ss_pred EEecCCCCeEEEEeCCCcEEEEECCCCCc--------------------ceEEEeecCCCcEEEEEeccCCCccceEEEe
Q psy9316 103 CWHATNPDLLSTASGDKTVRIWDARTQKS--------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYR 162 (264)
Q Consensus 103 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~ 162 (264)
+|+ ++++++++.||.|++||++.... ...+++++.|+.|.+|+++... ....+.
T Consensus 183 ~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~---~~~~~~ 256 (401)
T 4aez_A 183 SWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI---PKFTKT 256 (401)
T ss_dssp EEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS---EEEEEC
T ss_pred EEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC---ccEEec
Confidence 995 36899999999999999984321 1257889999999999987532 233566
Q ss_pred ccccceeeEEEcCCCCCEEEEEe--CCCcEEEEeCCCCccee-EeecCceEEEEEcCCCCEEEE--eeCCCeEEEEEccc
Q psy9316 163 GHTGSVDQLCWHATNPDLLSTAS--GDKTVRIWDARTQKSQI-IATKGENINITWAPNGNTIAV--GNKEDLVTFIDVVK 237 (264)
Q Consensus 163 ~h~~~i~~i~~~~~~~~~i~s~~--~dg~i~iwD~~t~~~~~-~~~~~~~~~v~~sp~g~~la~--gs~d~~i~~~d~~~ 237 (264)
.|...|.+++|+|.+..++++++ .||.|++||+++++... ......+.+++|+|+++++++ |+.|+.|++||+..
T Consensus 257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 88999999999998888988876 79999999999887533 334567889999999999999 55899999999876
Q ss_pred CCCCCCCcccCcccceeeee
Q psy9316 238 SLPPRERTLTSRGHLMETRS 257 (264)
Q Consensus 238 ~~~~~~~~~~~~~h~~~~~~ 257 (264)
+... ......+|...+.+
T Consensus 337 ~~~~--~~~~~~~h~~~v~~ 354 (401)
T 4aez_A 337 SGLT--KQVDIPAHDTRVLY 354 (401)
T ss_dssp TEEE--EEEEEECCSSCCCE
T ss_pred ccce--eEEEecCCCCCEEE
Confidence 3222 12234466655554
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=194.64 Aligned_cols=219 Identities=12% Similarity=0.121 Sum_probs=164.5
Q ss_pred CceEeecCCCeeEEEeecCceEEecccc--cccccc--ccCCCCEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCcc
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEY--QAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNK 88 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~--~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~ 88 (264)
....+.|.+..++++++.|+.+++|+.. +....+ .+|.+.|.+++|+| ++++|++++.|+.|++|++.. . .
T Consensus 77 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~---~ 152 (383)
T 3ei3_B 77 TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-S---V 152 (383)
T ss_dssp EEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-C---E
T ss_pred EEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-C---c
Confidence 3346777775677889999999999765 333334 36999999999999 789999999999999999863 2 1
Q ss_pred cEEEe---cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc------------------ce-EEEeecCCCcEEE
Q psy9316 89 EVVYR---GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS------------------QI-MLASGSFDKSVAI 146 (264)
Q Consensus 89 ~~~~~---~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~------------------~~-~~~~~~~d~~i~i 146 (264)
...+. .|...|.+++|+|++ .++++++.||.|++||++.... .. .+++++.|+.|.+
T Consensus 153 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 231 (383)
T 3ei3_B 153 IQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKL 231 (383)
T ss_dssp EEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred eEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEE
Confidence 12233 345789999999955 7899999999999999854211 11 6889999999999
Q ss_pred EEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--Eeec-----------------C
Q psy9316 147 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IATK-----------------G 207 (264)
Q Consensus 147 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~-----------------~ 207 (264)
|+++............+|...|.+++|+|.++.+|++++.||.|++||+++.+... ..+. +
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 311 (383)
T 3ei3_B 232 WDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMY 311 (383)
T ss_dssp EEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSS
T ss_pred EeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCC
Confidence 99986433222233347899999999998456789999999999999999876421 1111 2
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 208 ENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 208 ~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
....++|+|+|++ +|+.|+.|++||+..+.
T Consensus 312 ~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 312 DLIVAGRYPDDQL--LLNDKRTIDIYDANSGG 341 (383)
T ss_dssp SEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred CceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence 2344667777777 77899999999987644
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=199.10 Aligned_cols=197 Identities=13% Similarity=0.147 Sum_probs=145.1
Q ss_pred EeecCCCeeEE-EeecCceEEeccccc--cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe
Q psy9316 17 KLLPSGSQFHL-VCKIDDYVKHFNTHN--DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR 93 (264)
Q Consensus 17 ~~~~~~~~~~~-~~~~d~~~~~~~~~~--~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~ 93 (264)
.|.|.|..+.+ +++.|+.+++|+..+ .+..+ .|.+.|.+++|+|||++|++++.|+ +.+|+... +.........
T Consensus 140 ~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~-~~~~~~~~~~ 216 (365)
T 4h5i_A 140 YISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI-ETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVT-GSCIARKTDF 216 (365)
T ss_dssp EECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSSEEEEECSSC-EEEEETTT-CCEEEEECCC
T ss_pred EEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe-CCCCceEEEEEccCCceEEecccee-EEEEEecc-CcceeeeecC
Confidence 45566654332 345799999998654 34444 4778899999999999999998654 56665443 2222222345
Q ss_pred cccccEEeEEEecCCCCeEEEEeCCC----cEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEecccccee
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTASGDK----TVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~ 169 (264)
.|...|.+++|+|++ .++++++.|+ .+++||+....... .....+.+|..+|.
T Consensus 217 ~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~----------------------~~~~~~~~~~~~V~ 273 (365)
T 4h5i_A 217 DKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSV----------------------LRSKQVTNRFKGIT 273 (365)
T ss_dssp CTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEE----------------------EEEEEEESSCSCEE
T ss_pred CCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecc----------------------eeeeeecCCCCCeE
Confidence 688899999999965 6777888776 57778876432211 01124567888999
Q ss_pred eEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE---eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 170 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQII---ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 170 ~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~---~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
+++|+|+ +.+||+|+.|++|+|||+++++.... .+...+.+++|||||++||+||.|++|+|||+.....
T Consensus 274 ~~~~Spd-g~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~ 346 (365)
T 4h5i_A 274 SMDVDMK-GELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYA 346 (365)
T ss_dssp EEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTT
T ss_pred eEEECCC-CCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 9999985 57999999999999999999875332 3566799999999999999999999999999865433
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=192.96 Aligned_cols=210 Identities=16% Similarity=0.214 Sum_probs=166.6
Q ss_pred eeEEEeecCceEEeccccc--------cccccccCCCCEEEEEECCC----C---CeEEEEECCCcEEEEEeccCCCCcc
Q psy9316 24 QFHLVCKIDDYVKHFNTHN--------DIKEYQAHGSKVHSVAWSCD----G---RRLASGSFDKSVAIFALDKKGDLNK 88 (264)
Q Consensus 24 ~~~~~~~~d~~~~~~~~~~--------~~~~~~~h~~~V~~l~~s~~----g---~~l~s~s~dg~i~v~~~~~~~~~~~ 88 (264)
.++++++.|+.+++|+... .+..+.+|...|.+++|+|+ + ++|++++.|+.|++|++........
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 106 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 106 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc
Confidence 5677899999999997642 46778899999999999999 9 9999999999999999876432110
Q ss_pred --cEEEecc-----cccEEeEEEe----cCCCCe-EEEEeCCCcEEEEECCC------CCcce-----------------
Q psy9316 89 --EVVYRGH-----TGSVDQLCWH----ATNPDL-LSTASGDKTVRIWDART------QKSQI----------------- 133 (264)
Q Consensus 89 --~~~~~~h-----~~~v~~i~~~----~~~~~~-l~s~s~dg~i~vwd~~~------~~~~~----------------- 133 (264)
...+..| ...|.+++|+ |++ .+ +++++.||.|++||+++ .+...
T Consensus 107 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (397)
T 1sq9_A 107 VIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 185 (397)
T ss_dssp EEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSS
T ss_pred ccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCC
Confidence 2345677 5899999999 755 66 88999999999999876 21110
Q ss_pred -------------EEEeecCCCcEEEEEeccCCCccceEEEec---c---ccceeeEEEcCCCCCEEEEEeCC---CcEE
Q psy9316 134 -------------MLASGSFDKSVAIFALDKKGDLNKEVVYRG---H---TGSVDQLCWHATNPDLLSTASGD---KTVR 191 (264)
Q Consensus 134 -------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~---h---~~~i~~i~~~~~~~~~i~s~~~d---g~i~ 191 (264)
.+++++.|+.|.+|+++... ....+.. | ...|.+++|+|+ +.+|++++.| |.|+
T Consensus 186 ~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~h~~~~~~i~~i~~~~~-~~~l~~~~~d~~~g~i~ 261 (397)
T 1sq9_A 186 SQFATSVDISERGLIATGFNNGTVQISELSTLR---PLYNFESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCIT 261 (397)
T ss_dssp CCCCCEEEECTTSEEEEECTTSEEEEEETTTTE---EEEEEECCC---CCCCCEEEEEECSS-TTEEEEEEEETTEEEEE
T ss_pred CCCceEEEECCCceEEEEeCCCcEEEEECCCCc---eeEEEeccccccccCCccceEEECCC-CCEEEEEecCCCCceEE
Confidence 57788899999999986532 2334566 8 889999999985 5788999999 9999
Q ss_pred EEeCCCCcceeE--e-------------ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 192 IWDARTQKSQII--A-------------TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 192 iwD~~t~~~~~~--~-------------~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
+||+++.+.... . +...+.+++|+|++++|++|+.|+.|++||++.+
T Consensus 262 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 262 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp EEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred EEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999998775322 2 4567889999999999999999999999998764
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=197.91 Aligned_cols=213 Identities=22% Similarity=0.359 Sum_probs=167.8
Q ss_pred ccccCCCCEEEEEECCC-CCeEEEEECCCcEEEEEeccC-------CCCcccEEEecccccEEeEEEecCCCCeEEEEeC
Q psy9316 46 EYQAHGSKVHSVAWSCD-GRRLASGSFDKSVAIFALDKK-------GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG 117 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~v~~~~~~-------~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~ 117 (264)
....|.+.|++++|+|+ +++|++++.||.|++|++... +.......+.+|...|.+++|+|.+..+|++|+.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 44589999999999997 789999999999999998752 2233445678999999999999977669999999
Q ss_pred CCcEEEEECCCCCc---------------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceee
Q psy9316 118 DKTVRIWDARTQKS---------------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 170 (264)
Q Consensus 118 dg~i~vwd~~~~~~---------------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~ 170 (264)
||.|++||++.... ...+++++.|+.|.+|+++..........+..|...|.+
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 282 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 282 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEE
Confidence 99999999986211 125788899999999999865423333456789999999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEeCCCCc-c--eeEeecCceEEEEEcCCCC-EEEEeeCCCeEEEEEcccCCCC-----
Q psy9316 171 LCWHATNPDLLSTASGDKTVRIWDARTQK-S--QIIATKGENINITWAPNGN-TIAVGNKEDLVTFIDVVKSLPP----- 241 (264)
Q Consensus 171 i~~~~~~~~~i~s~~~dg~i~iwD~~t~~-~--~~~~~~~~~~~v~~sp~g~-~la~gs~d~~i~~~d~~~~~~~----- 241 (264)
++|+|.+..++++++.||.|++||+++.. . ....+...+.+++|+|+++ +|++++.|+.|++||++.....
T Consensus 283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 362 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 362 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc
Confidence 99999877789999999999999999843 2 2233566789999999995 6899999999999999873321
Q ss_pred -----CCCcccCcccceeeeee
Q psy9316 242 -----RERTLTSRGHLMETRSL 258 (264)
Q Consensus 242 -----~~~~~~~~~h~~~~~~~ 258 (264)
.+......||...++++
T Consensus 363 ~~~~~~~~~~~~~~h~~~v~~~ 384 (430)
T 2xyi_A 363 AEDGPPELLFIHGGHTAKISDF 384 (430)
T ss_dssp HHHCCTTEEEECCCCSSCEEEE
T ss_pred cccCCcceEEEcCCCCCCceEE
Confidence 13334556777666654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=196.52 Aligned_cols=237 Identities=19% Similarity=0.298 Sum_probs=175.8
Q ss_pred eEeecC---CCeeEEEeecCceEEecccc--cccccccc-----CCCCEEEEEECCC----CCeEEEEECCCcEEEEEec
Q psy9316 16 YKLLPS---GSQFHLVCKIDDYVKHFNTH--NDIKEYQA-----HGSKVHSVAWSCD----GRRLASGSFDKSVAIFALD 81 (264)
Q Consensus 16 ~~~~~~---~~~~~~~~~~d~~~~~~~~~--~~~~~~~~-----h~~~V~~l~~s~~----g~~l~s~s~dg~i~v~~~~ 81 (264)
..+.|. +....+++..++.+++|+.. +.++.+.. |.+.|.+++|+|+ +++|++|+.||.|++|++.
T Consensus 24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~ 103 (366)
T 3k26_A 24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI 103 (366)
T ss_dssp EEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT
T ss_pred EEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch
Confidence 367763 45556677778889998754 33444443 6678999999998 6799999999999999986
Q ss_pred cCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc----------------------ceEEEeec
Q psy9316 82 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS----------------------QIMLASGS 139 (264)
Q Consensus 82 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------------------~~~~~~~~ 139 (264)
.. .....+.+|...|.+++|+|.++.++++++.||.|++||+++++. ...+++++
T Consensus 104 ~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 180 (366)
T 3k26_A 104 TM---QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG 180 (366)
T ss_dssp TC---CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEE
T ss_pred hc---eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEec
Confidence 42 223457789999999999996668999999999999999986431 12578889
Q ss_pred CCCcEEEEEeccCCCcc-------------------------ceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEe
Q psy9316 140 FDKSVAIFALDKKGDLN-------------------------KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194 (264)
Q Consensus 140 ~d~~i~i~~~~~~~~~~-------------------------~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD 194 (264)
.|+.|.+|+++...... .......|...|.+++|+ +.++++++.||.|++||
T Consensus 181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd 257 (366)
T 3k26_A 181 MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWK 257 (366)
T ss_dssp TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEE
T ss_pred CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEe
Confidence 99999999986421110 011223488899999997 46899999999999999
Q ss_pred CCCCcc------------e-e---EeecCceEEEEEcCC--CCEEEEeeCCCeEEEEEcccCCCCCCCcccCccc--cee
Q psy9316 195 ARTQKS------------Q-I---IATKGENINITWAPN--GNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGH--LME 254 (264)
Q Consensus 195 ~~t~~~------------~-~---~~~~~~~~~v~~sp~--g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h--~~~ 254 (264)
+++... . . ..+...+.+++|+|+ +++|++|+.|+.|++||+..+........++.+| ...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 337 (366)
T 3k26_A 258 PGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAA 337 (366)
T ss_dssp ESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSC
T ss_pred CCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCc
Confidence 987643 1 1 112345677899999 9999999999999999998765544344456666 455
Q ss_pred eeee
Q psy9316 255 TRSL 258 (264)
Q Consensus 255 ~~~~ 258 (264)
+++|
T Consensus 338 v~~~ 341 (366)
T 3k26_A 338 IRQT 341 (366)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-25 Score=187.10 Aligned_cols=194 Identities=23% Similarity=0.371 Sum_probs=154.8
Q ss_pred cccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCC-cccEEEecccccEEeEEEecC-CCCeEEEEeCCCcEE
Q psy9316 45 KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDL-NKEVVYRGHTGSVDQLCWHAT-NPDLLSTASGDKTVR 122 (264)
Q Consensus 45 ~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~-~~~~l~s~s~dg~i~ 122 (264)
+.+.+|.+.|.+++|+|++++|++|+.||.|++|++...... .....+.+|...|.+++|+|. ++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 345799999999999999999999999999999999753321 223446789999999999985 468999999999999
Q ss_pred EEECCCCC----------------------------c--ceEEEeecCCCcEEEEEeccCCCccceE----------EEe
Q psy9316 123 IWDARTQK----------------------------S--QIMLASGSFDKSVAIFALDKKGDLNKEV----------VYR 162 (264)
Q Consensus 123 vwd~~~~~----------------------------~--~~~~~~~~~d~~i~i~~~~~~~~~~~~~----------~~~ 162 (264)
+||++.++ . ...+++++.|+.|.+|+++......... ...
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99997641 1 2357888999999999987654332211 012
Q ss_pred ccccceeeEEEcCC--CCCEEEEEeCCCcEEEEeCCCCcceeE----eecCceEEEEEcCCC----CEEEEeeCCCeEEE
Q psy9316 163 GHTGSVDQLCWHAT--NPDLLSTASGDKTVRIWDARTQKSQII----ATKGENINITWAPNG----NTIAVGNKEDLVTF 232 (264)
Q Consensus 163 ~h~~~i~~i~~~~~--~~~~i~s~~~dg~i~iwD~~t~~~~~~----~~~~~~~~v~~sp~g----~~la~gs~d~~i~~ 232 (264)
.|...+.++.|+|. ++.++++++.|+.+.+|+......... .+...+.+++|+|++ ++|++|+.|+.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 57788999999996 467999999999998888877664221 235578899999998 89999999999999
Q ss_pred EEcccC
Q psy9316 233 IDVVKS 238 (264)
Q Consensus 233 ~d~~~~ 238 (264)
||++.+
T Consensus 245 wd~~~~ 250 (351)
T 3f3f_A 245 FKITEK 250 (351)
T ss_dssp EEEEEC
T ss_pred EeCCCC
Confidence 999874
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-25 Score=189.83 Aligned_cols=205 Identities=18% Similarity=0.258 Sum_probs=159.3
Q ss_pred cccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEEC
Q psy9316 47 YQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 126 (264)
Q Consensus 47 ~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~ 126 (264)
+..|.++|.+++|+|++++|++++.|+.|++|++... .......+.+|...|.+++|+|+ +.++++++.||.|++||+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-cEEeeeeecCCCCcccEEEEeCC-CCEEEEEcCCCeEEEEEC
Confidence 4568999999999999999999999999999998752 22233457789999999999994 478999999999999998
Q ss_pred CCCCc---------------------ceEEEeecCCCcEEEEEeccCCCccceE-EEeccccceeeEEEcCCCCCEEEEE
Q psy9316 127 RTQKS---------------------QIMLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNPDLLSTA 184 (264)
Q Consensus 127 ~~~~~---------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~-~~~~h~~~i~~i~~~~~~~~~i~s~ 184 (264)
++++. ...+++++.|+.+.+|+++......... ....|...|.+++|+|+ +.+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~ 160 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN-SVLLAAG 160 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT-SSEEEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCC-CCEEEEE
Confidence 76531 1257888999999999998654322222 23568889999999985 5788999
Q ss_pred eCCCcEEEEeCC------------------CCcceeE--eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCC
Q psy9316 185 SGDKTVRIWDAR------------------TQKSQII--ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRER 244 (264)
Q Consensus 185 ~~dg~i~iwD~~------------------t~~~~~~--~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~ 244 (264)
+.||.|++||++ +++.... .+...+.+++|+|++++|++++.|+.|++||++.+..
T Consensus 161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---- 236 (372)
T 1k8k_C 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA---- 236 (372)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE----
T ss_pred cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce----
Confidence 999999999965 2332211 2345688999999999999999999999999986432
Q ss_pred cccCcccceeeeee
Q psy9316 245 TLTSRGHLMETRSL 258 (264)
Q Consensus 245 ~~~~~~h~~~~~~~ 258 (264)
..++.+|...++++
T Consensus 237 ~~~~~~~~~~v~~~ 250 (372)
T 1k8k_C 237 VATLASETLPLLAV 250 (372)
T ss_dssp EEEEECSSCCEEEE
T ss_pred eEEEccCCCCeEEE
Confidence 23455666555544
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-24 Score=189.31 Aligned_cols=231 Identities=15% Similarity=0.226 Sum_probs=175.8
Q ss_pred CceEeecCCCeeEEEeecCceEEeccc----ccc--------cccccc----------CCCCEEEEEECCCCCeEEEEEC
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNT----HND--------IKEYQA----------HGSKVHSVAWSCDGRRLASGSF 71 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~--------~~~~~~----------h~~~V~~l~~s~~g~~l~s~s~ 71 (264)
....+.|.+..+.++++.|+.+++|+. ... ...+.. |.+.|.+++|+|++++|++|+.
T Consensus 49 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 128 (425)
T 1r5m_A 49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVE 128 (425)
T ss_dssp SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeC
Confidence 444777777646678899999999977 322 222222 6789999999999999999999
Q ss_pred CCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-------------------
Q psy9316 72 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ------------------- 132 (264)
Q Consensus 72 dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------------------- 132 (264)
||.|++|+.. + .....+..|...|.+++|+|++ .++++++.||.+++||+++++..
T Consensus 129 dg~i~i~~~~--~--~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 129 NGELRLWNKT--G--ALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHS 203 (425)
T ss_dssp TSCEEEEETT--S--CEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC-------------
T ss_pred CCeEEEEeCC--C--CeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecccc
Confidence 9999999832 2 2234567899999999999855 68889999999999999765321
Q ss_pred --------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q psy9316 133 --------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 198 (264)
Q Consensus 133 --------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~ 198 (264)
..+++++.++.|.+|+++.... ...+..|...|.+++|+|+ +.+|++++.||.|++||+++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP---TGKLIGHHGPISVLEFNDT-NKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp --CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC---SEEECCCSSCEEEEEEETT-TTEEEEEETTSCEEEECSSSB
T ss_pred CCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce---eeeeccCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCC
Confidence 1367788899999999875432 2345688999999999985 468899999999999999987
Q ss_pred cceeE--eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 199 KSQII--ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 199 ~~~~~--~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
+.... .+...+.+++|+|++ ++++++.|+.|++||++.+.. .....+|...+.++
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~ 336 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL----LALSIVDGVPIFAG 336 (425)
T ss_dssp SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE----EEEEECTTCCEEEE
T ss_pred ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE----eEecccCCccEEEE
Confidence 64332 345678899999999 999999999999999875432 23344555555443
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-25 Score=193.35 Aligned_cols=231 Identities=12% Similarity=0.146 Sum_probs=169.4
Q ss_pred eEeecCCCeeEEEeecCceEEeccccc--cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTHN--DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR 93 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~ 93 (264)
..+.|.+. ..++++.|+.+++|+... ....+..| ..+....|+|++++|++|+.|+.|++|++... .....+.
T Consensus 62 ~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~ 136 (420)
T 3vl1_A 62 NTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---LQREIDQ 136 (420)
T ss_dssp CEEEEEET-TEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC---EEEEETT
T ss_pred eeeeecCC-eEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc---ceeeecc
Confidence 45666665 356788899999997643 44455555 44555578999999999999999999987632 2223456
Q ss_pred cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCC
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGD 154 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~ 154 (264)
+|...|.+++|+|++ .+|++++.||.|++||+++++.. ..+++++.|+.|.+|+++....
T Consensus 137 ~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 137 AHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215 (420)
T ss_dssp SSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred cccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence 899999999999954 68999999999999999875421 2578899999999999865322
Q ss_pred ccceEEEe---ccc---------------------cceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe---ecC
Q psy9316 155 LNKEVVYR---GHT---------------------GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA---TKG 207 (264)
Q Consensus 155 ~~~~~~~~---~h~---------------------~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~---~~~ 207 (264)
. ..+. .|. ..+..++|+| ++.+|++++.||.|++||+++.+..... +..
T Consensus 216 ~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 291 (420)
T 3vl1_A 216 I---HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC 291 (420)
T ss_dssp E---EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSS
T ss_pred e---EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcccccCC
Confidence 1 1222 222 3455555666 4568899999999999999988754333 235
Q ss_pred ceEEEEEcCCCC-EEEEeeCCCeEEEEEcccCCCCCCCcccCcc-cceeeeeec
Q psy9316 208 ENINITWAPNGN-TIAVGNKEDLVTFIDVVKSLPPRERTLTSRG-HLMETRSLW 259 (264)
Q Consensus 208 ~~~~v~~sp~g~-~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~-h~~~~~~~~ 259 (264)
.+.+++|+|+++ +|++|+.|+.|++||++.+..+ ..++.+ |...++++|
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~~~~~~v~~~~ 342 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP---VGEFLINEGTPINNVY 342 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEEEESTTSCEEEEE
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc---hhhhhccCCCCceEEE
Confidence 688999999999 9999999999999999865332 223444 555566654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-25 Score=202.14 Aligned_cols=218 Identities=11% Similarity=0.057 Sum_probs=164.0
Q ss_pred CceEeecCC-----CeeEEEeecCceEEecccccc-------------ccccccCCCCEEEEEECCCCCeEEEEECCCcE
Q psy9316 14 PEYKLLPSG-----SQFHLVCKIDDYVKHFNTHND-------------IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSV 75 (264)
Q Consensus 14 ~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~-------------~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i 75 (264)
....+.|.+ +.++++++.|+.+++|+.... ..++.+|.+.|.+++|+++ ..|++|+.||+|
T Consensus 211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV 289 (524)
T 2j04_B 211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFV 289 (524)
T ss_dssp EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEE
T ss_pred EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEE
Confidence 445777752 356778999999999976432 2357789999999999986 489999999999
Q ss_pred EEEEeccCCCCcccEEEecccccEEeEE--EecCCCCeEEEEeCCCcEEEEECCCCCc---------------------c
Q psy9316 76 AIFALDKKGDLNKEVVYRGHTGSVDQLC--WHATNPDLLSTASGDKTVRIWDARTQKS---------------------Q 132 (264)
Q Consensus 76 ~v~~~~~~~~~~~~~~~~~h~~~v~~i~--~~~~~~~~l~s~s~dg~i~vwd~~~~~~---------------------~ 132 (264)
++||+..... ....+.+|...|.+++ |.+++.++|+++|.|++|++||+++.+. .
T Consensus 290 ~lWD~~~~~~--~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~ 367 (524)
T 2j04_B 290 AEFDLTDPEV--PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI 367 (524)
T ss_dssp EEEETTBCSS--CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTT
T ss_pred EEEECCCCCC--ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCc
Confidence 9999875321 2234778999999994 4553337899999999999999865210 1
Q ss_pred eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce-----------
Q psy9316 133 IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ----------- 201 (264)
Q Consensus 133 ~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~----------- 201 (264)
..+++++.|++|++|+++..... ..+.+|...|.+++|+|++ .+|++|+.||+|++||+..+...
T Consensus 368 ~~l~s~~~d~tv~lwd~~~~~~~---~~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~ 443 (524)
T 2j04_B 368 YSYIYSDGASSLRAVPSRAAFAV---HPLVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNSSATQKS 443 (524)
T ss_dssp TEEEEECSSSEEEEEETTCTTCC---EEEEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC------CCC
T ss_pred CeEEEeCCCCcEEEEECcccccc---eeeecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccCccceee
Confidence 14678889999999998754322 3467899999999999964 57889999999999997432100
Q ss_pred --e-E--------------------------------eecCceEEEEEcCCCC---EEEEeeCCCeEEEEEcccC
Q psy9316 202 --I-I--------------------------------ATKGENINITWAPNGN---TIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 202 --~-~--------------------------------~~~~~~~~v~~sp~g~---~la~gs~d~~i~~~d~~~~ 238 (264)
. . .+...+.+|+|+|++. ++|+|+.||+|+||++...
T Consensus 444 ~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 444 LRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred eEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 0 0 0112356799999964 9999999999999998753
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-24 Score=191.33 Aligned_cols=225 Identities=20% Similarity=0.279 Sum_probs=176.1
Q ss_pred EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG 94 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~ 94 (264)
.+-+ ++...++++.|+.+++|+. .+....+.+|.+.|.+++| ++++|++|+.||.|++|++.... ....+.+
T Consensus 138 ~~~~-d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~ 211 (435)
T 1p22_A 138 CLQY-DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE---MLNTLIH 211 (435)
T ss_dssp EEEC-CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC---EEEEECC
T ss_pred EEEE-CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc---EEEEEcC
Confidence 3444 4456678999999999975 4567788899999999998 78999999999999999986532 2345678
Q ss_pred ccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc--------------------eEEEeecCCCcEEEEEeccCCC
Q psy9316 95 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--------------------IMLASGSFDKSVAIFALDKKGD 154 (264)
Q Consensus 95 h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--------------------~~~~~~~~d~~i~i~~~~~~~~ 154 (264)
|...|.+++|++ ..+++++.||.|++||+++.... ..+++++.|+.|.+|+++...
T Consensus 212 h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~- 287 (435)
T 1p22_A 212 HCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE- 287 (435)
T ss_dssp CCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-
T ss_pred CCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc-
Confidence 999999999963 58999999999999999865421 147889999999999986543
Q ss_pred ccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE--eecCceEEEEEcCCCCEEEEeeCCCeEEE
Q psy9316 155 LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII--ATKGENINITWAPNGNTIAVGNKEDLVTF 232 (264)
Q Consensus 155 ~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~--~~~~~~~~v~~sp~g~~la~gs~d~~i~~ 232 (264)
....+.+|...|.++.++ +.++++|+.||.|++||+++++.... .+...+.+++| ++++|++|+.|+.|++
T Consensus 288 --~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~v 360 (435)
T 1p22_A 288 --FVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKV 360 (435)
T ss_dssp --EEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred --EEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEE
Confidence 233567899999999985 46899999999999999998875322 34556778887 7999999999999999
Q ss_pred EEcccCCCCCC-----CcccCcccceeeeee
Q psy9316 233 IDVVKSLPPRE-----RTLTSRGHLMETRSL 258 (264)
Q Consensus 233 ~d~~~~~~~~~-----~~~~~~~h~~~~~~~ 258 (264)
||++.+..+.. ...++.+|...+.++
T Consensus 361 wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 391 (435)
T 1p22_A 361 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391 (435)
T ss_dssp EEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred EECCCCCCccccccchheeeccCCCCCeEEE
Confidence 99986543221 233456777766654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-24 Score=178.84 Aligned_cols=214 Identities=20% Similarity=0.240 Sum_probs=168.3
Q ss_pred ceEeecCCCeeEEEeecCceEEecccc-----ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCccc
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTH-----NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE 89 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~-----~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~ 89 (264)
...+.|.+. +.++++.|+.++.|+.. ..+..+.+|...|.++.| ++++|++++.|+.|++|+. + ...
T Consensus 64 ~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~---~--~~~ 135 (313)
T 3odt_A 64 SVCYDSEKE-LLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE---G--SLV 135 (313)
T ss_dssp EEEEETTTT-EEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET---T--EEE
T ss_pred EEEECCCCC-EEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC---C--cEE
Confidence 346677664 56788999999887643 346778899999999999 6889999999999999982 1 233
Q ss_pred EEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-----------------ceEEEeecCCCcEEEEEeccC
Q psy9316 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-----------------QIMLASGSFDKSVAIFALDKK 152 (264)
Q Consensus 90 ~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-----------------~~~~~~~~~d~~i~i~~~~~~ 152 (264)
..+..|...+.+++|.|.++.++++++.||.+++||...... ...+++++.|+.|.+|+++..
T Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 215 (313)
T 3odt_A 136 YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG 215 (313)
T ss_dssp EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC
T ss_pred EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch
Confidence 456789999999999986678999999999999999543110 113788999999999998654
Q ss_pred CCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--EeecCceEEEEEcCCCCEEEEeeCCCeE
Q psy9316 153 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IATKGENINITWAPNGNTIAVGNKEDLV 230 (264)
Q Consensus 153 ~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i 230 (264)
. ....+..|...|.+++|+|++ .+++++.||.|++||+++.+... ..+...+.+++|+|+++ +++++.|+.|
T Consensus 216 ~---~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 216 D---VLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp C---EEEEEECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCE
T ss_pred h---hhhhhhcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcE
Confidence 3 233567899999999999865 47889999999999999987532 23345788999999998 5578899999
Q ss_pred EEEEcccCCCCC
Q psy9316 231 TFIDVVKSLPPR 242 (264)
Q Consensus 231 ~~~d~~~~~~~~ 242 (264)
++||++++....
T Consensus 290 ~iw~~~~~~~~~ 301 (313)
T 3odt_A 290 RIFSQEKSRWAS 301 (313)
T ss_dssp EEEESCGGGCCC
T ss_pred EEEeCCCCceee
Confidence 999998765544
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=190.71 Aligned_cols=218 Identities=19% Similarity=0.356 Sum_probs=167.0
Q ss_pred ceEeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEE
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY 92 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~ 92 (264)
...+.|.+. .++++..|+.+++|+. .+.++.+.+|.+.|.+++| ++++|++|+.||.|++|++..... ....+
T Consensus 139 ~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~ 213 (401)
T 4aez_A 139 SVKWSHDGS-FLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH--QIGTL 213 (401)
T ss_dssp EEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC--EEEEE
T ss_pred EEEECCCCC-EEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc--eeeEE
Confidence 346777664 5677889999999975 4567788899999999999 568999999999999999874332 23457
Q ss_pred ecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc--------------------eEEEeec--CCCcEEEEEec
Q psy9316 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--------------------IMLASGS--FDKSVAIFALD 150 (264)
Q Consensus 93 ~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--------------------~~~~~~~--~d~~i~i~~~~ 150 (264)
.+|...|.+++|+| ++.++++++.||.|++||+++++.. .++++++ .|+.|.+|+++
T Consensus 214 ~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 214 QGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp ECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred cCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence 78999999999999 4578999999999999999875321 2456654 89999999987
Q ss_pred cCCCccceEEEeccccceeeEEEcCCCCCEEEE--EeCCCcEEEEeCCCCccee----EeecCceEEEEEcCCCCEEEEe
Q psy9316 151 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST--ASGDKTVRIWDARTQKSQI----IATKGENINITWAPNGNTIAVG 224 (264)
Q Consensus 151 ~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s--~~~dg~i~iwD~~t~~~~~----~~~~~~~~~v~~sp~g~~la~g 224 (264)
..... .. ..+...|.+++|+|++ ..+++ |+.||.|++||+.+..... ..+...+.+++|+|+|++|+++
T Consensus 293 ~~~~~---~~-~~~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 367 (401)
T 4aez_A 293 TGARV---NT-VDAGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA 367 (401)
T ss_dssp TCCEE---EE-EECSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEE
T ss_pred CCCEE---EE-EeCCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 54322 12 2466789999999865 56666 4489999999999865322 2345578899999999999999
Q ss_pred eCCCeEEEEEcccCCCCCC
Q psy9316 225 NKEDLVTFIDVVKSLPPRE 243 (264)
Q Consensus 225 s~d~~i~~~d~~~~~~~~~ 243 (264)
+.|+.|++||+.++....+
T Consensus 368 ~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 368 ASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp CTTSEEEEEECCC------
T ss_pred eCCCcEEEEECCCCccccc
Confidence 9999999999987655443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-24 Score=185.47 Aligned_cols=223 Identities=17% Similarity=0.270 Sum_probs=166.6
Q ss_pred CceEeecCCCeeEEEeecCceEEeccccc--ccccc-------------ccCCCCEEEEEECC-CCCeEEEEECCCcEEE
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTHN--DIKEY-------------QAHGSKVHSVAWSC-DGRRLASGSFDKSVAI 77 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~-------------~~h~~~V~~l~~s~-~g~~l~s~s~dg~i~v 77 (264)
....+.|..+.++++++.|+.+++|+... ....+ .+|.+.|.+++|+| ++++|++++.|+.|++
T Consensus 47 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 126 (408)
T 4a11_B 47 NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKV 126 (408)
T ss_dssp EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEE
T ss_pred EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEE
Confidence 34477773445677899999999997643 22232 25999999999999 7889999999999999
Q ss_pred EEeccCCCCcccEEEecccccEEeEEEecCCC--CeEEEEeCCCcEEEEECCCCCcc--------------------eEE
Q psy9316 78 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNP--DLLSTASGDKTVRIWDARTQKSQ--------------------IML 135 (264)
Q Consensus 78 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~--~~l~s~s~dg~i~vwd~~~~~~~--------------------~~~ 135 (264)
|++.... ....+ .+...+.++.|.+.+. .++++++.||.|++||+++++.. .++
T Consensus 127 wd~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll 202 (408)
T 4a11_B 127 WDTNTLQ---TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYIL 202 (408)
T ss_dssp EETTTTE---EEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEE
T ss_pred eeCCCCc---cceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEE
Confidence 9986422 11223 3677899999988643 48999999999999999865421 157
Q ss_pred EeecCCCcEEEEEeccCCCccc-------------eEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee
Q psy9316 136 ASGSFDKSVAIFALDKKGDLNK-------------EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI 202 (264)
Q Consensus 136 ~~~~~d~~i~i~~~~~~~~~~~-------------~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~ 202 (264)
++++.|+.|.+|+++....... ......|...|.+++|+|+ +.+|++++.||.|++||+++.+...
T Consensus 203 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 203 ATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWNSSNGENTL 281 (408)
T ss_dssp EEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCBCC
T ss_pred EEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC-CCEEEEecCCCeEEEEECCCCccce
Confidence 8899999999999865431110 0112468889999999985 5788999999999999998754210
Q ss_pred -------------------------------------------------EeecCceEEEEEcCCCCEEEEeeCCCeEEEE
Q psy9316 203 -------------------------------------------------IATKGENINITWAPNGNTIAVGNKEDLVTFI 233 (264)
Q Consensus 203 -------------------------------------------------~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~ 233 (264)
..+...+.+++|+|++++|++|+.|+.|++|
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 361 (408)
T 4a11_B 282 VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361 (408)
T ss_dssp CCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEE
Confidence 1133467889999999999999999999999
Q ss_pred EcccCCCC
Q psy9316 234 DVVKSLPP 241 (264)
Q Consensus 234 d~~~~~~~ 241 (264)
|+......
T Consensus 362 ~~~~~~~~ 369 (408)
T 4a11_B 362 VPSLYEPV 369 (408)
T ss_dssp EECC----
T ss_pred eCCCCCcc
Confidence 99875544
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-24 Score=187.72 Aligned_cols=228 Identities=18% Similarity=0.355 Sum_probs=172.8
Q ss_pred eEeecCCCC--CceEeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEe
Q psy9316 5 VIQFHTPKS--PEYKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFAL 80 (264)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~ 80 (264)
.++++++.. .-..+.|.+. ++++++.|+.+++|+. .+.++.+.+|...+.++.++ +..|++|+.|+.+++|+.
T Consensus 140 ~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~ 216 (420)
T 4gga_A 140 LLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDV 216 (420)
T ss_dssp EEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEET
T ss_pred EEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeee
Confidence 345555443 3347777775 5678999999999975 46678899999999998875 789999999999999997
Q ss_pred ccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc------------------------eEE-
Q psy9316 81 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ------------------------IML- 135 (264)
Q Consensus 81 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------------------------~~~- 135 (264)
.... .....+.+|...+..+.|.|.+ .++++++.|+.+++||..+++.. ..+
T Consensus 217 ~~~~--~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la 293 (420)
T 4gga_A 217 RVAE--HHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 293 (420)
T ss_dssp TSSS--CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred cccc--eeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence 6432 2334578999999999999855 78999999999999998764311 122
Q ss_pred -EeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEE-EeCCCcEEEEeCCCCccee--EeecCceEE
Q psy9316 136 -ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST-ASGDKTVRIWDARTQKSQI--IATKGENIN 211 (264)
Q Consensus 136 -~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s-~~~dg~i~iwD~~t~~~~~--~~~~~~~~~ 211 (264)
+.|+.|+.|++|++...... ..+ .+...+..+.|+|.+..++++ |+.||.|+|||+.+.+... ..+.+.+.+
T Consensus 294 ~~~gs~D~~I~iwd~~t~~~~---~~~-~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~ 369 (420)
T 4gga_A 294 TGGGTSDRHIRIWNVCSGACL---SAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLS 369 (420)
T ss_dssp EEECTTTCEEEEEETTTTEEE---EEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEeecCCCEEEEEeCCccccc---eee-ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence 34678999999998653221 122 344578889999876555443 3379999999999987532 345678999
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 212 ITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 212 v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
++|+|+|++|++|+.|++|++||+.+..+.+
T Consensus 370 l~~spdg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 370 LTMSPDGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp EEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence 9999999999999999999999998755443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-24 Score=191.04 Aligned_cols=217 Identities=11% Similarity=0.253 Sum_probs=162.6
Q ss_pred EeecCCCeeEEEeecCceEEeccccc-------------cccccccCC------------CCEEEEEECCCC--CeEEEE
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHN-------------DIKEYQAHG------------SKVHSVAWSCDG--RRLASG 69 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~-------------~~~~~~~h~------------~~V~~l~~s~~g--~~l~s~ 69 (264)
.+.|.+. ++++++.|+.+++|+... ....+.+|. +.|.+++|+|++ .+|+++
T Consensus 35 ~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~ 113 (447)
T 3dw8_B 35 EFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLS 113 (447)
T ss_dssp EECSSSS-EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEE
T ss_pred EECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEe
Confidence 5666664 567889999999997542 356788998 889999999998 799999
Q ss_pred ECCCcEEEEEeccCCCC------------------------------------cccEE-EecccccEEeEEEecCCCCeE
Q psy9316 70 SFDKSVAIFALDKKGDL------------------------------------NKEVV-YRGHTGSVDQLCWHATNPDLL 112 (264)
Q Consensus 70 s~dg~i~v~~~~~~~~~------------------------------------~~~~~-~~~h~~~v~~i~~~~~~~~~l 112 (264)
+.|+.|++|++...... ..... ..+|...|.+++|+|+ +.++
T Consensus 114 s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l 192 (447)
T 3dw8_B 114 TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD-YETY 192 (447)
T ss_dssp ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT-SSEE
T ss_pred CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC-CCEE
Confidence 99999999998642110 00001 3579999999999995 4688
Q ss_pred EEEeCCCcEEEEECCCCC---------------------------cc-eEEEeecCCCcEEEEEeccCCCcc-ceEEEec
Q psy9316 113 STASGDKTVRIWDARTQK---------------------------SQ-IMLASGSFDKSVAIFALDKKGDLN-KEVVYRG 163 (264)
Q Consensus 113 ~s~s~dg~i~vwd~~~~~---------------------------~~-~~~~~~~~d~~i~i~~~~~~~~~~-~~~~~~~ 163 (264)
++| .|+.|++||+++.. .. ..+++++.|+.|.+|+++...... ....+..
T Consensus 193 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 271 (447)
T 3dw8_B 193 LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE 271 (447)
T ss_dssp EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECC
T ss_pred EEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEecc
Confidence 887 79999999998211 01 368899999999999987654311 1245566
Q ss_pred ccc------------ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCC-Ccce--eEeecCc---------------eEEEE
Q psy9316 164 HTG------------SVDQLCWHATNPDLLSTASGDKTVRIWDART-QKSQ--IIATKGE---------------NINIT 213 (264)
Q Consensus 164 h~~------------~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t-~~~~--~~~~~~~---------------~~~v~ 213 (264)
|.. .|.+++|+|+ +.+|++++. |.|++||+++ ++.. ...+... +..++
T Consensus 272 ~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 349 (447)
T 3dw8_B 272 PEDPSNRSFFSEIISSISDVKFSHS-GRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECC 349 (447)
T ss_dssp C-----CCHHHHHTTCEEEEEECTT-SSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEE
T ss_pred CCCccccccccccCceEEEEEECCC-CCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEE
Confidence 665 8999999984 578888888 9999999987 4432 1222110 22489
Q ss_pred EcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 214 WAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 214 ~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
|+|+|++|++|+.|+.|++||+..+
T Consensus 350 ~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 350 WNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp ECTTSSEEEEECSTTEEEEEETTTC
T ss_pred ECCCCCEEEEeccCCEEEEEEcCCC
Confidence 9999999999999999999998764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=188.15 Aligned_cols=227 Identities=20% Similarity=0.286 Sum_probs=174.3
Q ss_pred EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEEC--CCCCeEEEEECCCcEEEEEeccCCCCcc----
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWS--CDGRRLASGSFDKSVAIFALDKKGDLNK---- 88 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s--~~g~~l~s~s~dg~i~v~~~~~~~~~~~---- 88 (264)
.+.|.+ ..++++.|+.+++|+. .+.+..+.+|.+.|.+++|+ +++++|++|+.|+.|++|++........
T Consensus 169 ~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 246 (464)
T 3v7d_B 169 KYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246 (464)
T ss_dssp EECSTT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------
T ss_pred EEcCCC--EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc
Confidence 444444 6678999999999975 45677888999999999998 5789999999999999999875432210
Q ss_pred ----------------cEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ce
Q psy9316 89 ----------------EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QI 133 (264)
Q Consensus 89 ----------------~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~ 133 (264)
...+.+|...|.++.. ++.++++++.||.|++||+++.+. ..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 323 (464)
T 3v7d_B 247 HDYPLVFHTPEENPYFVGVLRGHMASVRTVSG---HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 323 (464)
T ss_dssp CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE---ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT
T ss_pred CCcceEeeccCCCeEEEEEccCccceEEEEcC---CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC
Confidence 2346678888888754 347899999999999999987542 12
Q ss_pred EEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee-cCceEEE
Q psy9316 134 MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT-KGENINI 212 (264)
Q Consensus 134 ~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~-~~~~~~v 212 (264)
.+++|+.|+.|++|+++... ....+.+|...|.++.|++ .++++++.||.|++||+++........ ...+..+
T Consensus 324 ~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 397 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLENGE---LMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 397 (464)
T ss_dssp EEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEE
T ss_pred EEEEEeCCCcEEEEECCCCc---EEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEE
Confidence 57899999999999986532 2345678999999999973 689999999999999999877544443 3445678
Q ss_pred EEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 213 TWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 213 ~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
+|+|+++++++|+ |+.|++||+..+...++ ...+|...+.+|
T Consensus 398 ~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~---~~~~~~~~v~~v 439 (464)
T 3v7d_B 398 TFYVSDNILVSGS-ENQFNIYNLRSGKLVHA---NILKDADQIWSV 439 (464)
T ss_dssp EEEECSSEEEEEE-TTEEEEEETTTCCEEES---CTTTTCSEEEEE
T ss_pred EEEeCCCEEEEec-CCeEEEEECCCCcEEeh---hhccCCCcEEEE
Confidence 9999999999999 99999999987554332 134555555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-24 Score=203.22 Aligned_cols=217 Identities=18% Similarity=0.304 Sum_probs=174.9
Q ss_pred CceEeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEE
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~ 91 (264)
....+.|.+. ..+++..|+.+++|+. ...+..+.+|.+.|.+++|+|++++|++|+.||.|++|++.... ....
T Consensus 17 ~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~---~~~~ 92 (814)
T 3mkq_A 17 KGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE---KVVD 92 (814)
T ss_dssp EEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC---EEEE
T ss_pred EEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---EEEE
Confidence 4447778775 4567888999999874 45678888999999999999999999999999999999986432 2345
Q ss_pred EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc---------------------ceEEEeecCCCcEEEEEec
Q psy9316 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---------------------QIMLASGSFDKSVAIFALD 150 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---------------------~~~~~~~~~d~~i~i~~~~ 150 (264)
+.+|...|.+++|+|++ .++++++.||.|++||++++.. ...+++++.|+.|.+|+++
T Consensus 93 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~ 171 (814)
T 3mkq_A 93 FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171 (814)
T ss_dssp EECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred EecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 67899999999999965 6788999999999999876421 2257888999999999986
Q ss_pred cCCCccceEEEe-ccccceeeEEEcCC-CCCEEEEEeCCCcEEEEeCCCCcceeE--eecCceEEEEEcCCCCEEEEeeC
Q psy9316 151 KKGDLNKEVVYR-GHTGSVDQLCWHAT-NPDLLSTASGDKTVRIWDARTQKSQII--ATKGENINITWAPNGNTIAVGNK 226 (264)
Q Consensus 151 ~~~~~~~~~~~~-~h~~~i~~i~~~~~-~~~~i~s~~~dg~i~iwD~~t~~~~~~--~~~~~~~~v~~sp~g~~la~gs~ 226 (264)
..... ..+. .+...+..++|+|. ++.++++++.||.|++||+++++.... .+...+.+++|+|+|+++++|+.
T Consensus 172 ~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 248 (814)
T 3mkq_A 172 QSTPN---FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248 (814)
T ss_dssp CSSCS---EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred CCcce---eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence 54322 2233 34478999999983 456899999999999999998775322 34556889999999999999999
Q ss_pred CCeEEEEEcccC
Q psy9316 227 EDLVTFIDVVKS 238 (264)
Q Consensus 227 d~~i~~~d~~~~ 238 (264)
|+.|++||+..+
T Consensus 249 dg~v~vwd~~~~ 260 (814)
T 3mkq_A 249 DGTLKIWNSSTY 260 (814)
T ss_dssp TSCEEEEETTTC
T ss_pred CCeEEEEECCCC
Confidence 999999998763
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-25 Score=188.78 Aligned_cols=227 Identities=9% Similarity=0.052 Sum_probs=160.0
Q ss_pred CeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCC------CCcccEEE-e
Q psy9316 23 SQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG------DLNKEVVY-R 93 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~------~~~~~~~~-~ 93 (264)
+...++++.|+.+++|+.. +.+..+. ...|.++.|+|+ +++++.|++|++|+..... .......+ .
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 122 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV 122 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeec
Confidence 3456778999999999764 3344443 467788888888 9999999999999765210 11101112 2
Q ss_pred cccccEEeEEEec--CCCCeEEEEeCCCcEEEEECCCCCc--------------------ceEEEeecCCCcEEEEEecc
Q psy9316 94 GHTGSVDQLCWHA--TNPDLLSTASGDKTVRIWDARTQKS--------------------QIMLASGSFDKSVAIFALDK 151 (264)
Q Consensus 94 ~h~~~v~~i~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~--------------------~~~~~~~~~d~~i~i~~~~~ 151 (264)
.|...|.+++|+| .+ .++++++.||.|++||+++++. ..++++|+.|+.|++||++.
T Consensus 123 ~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp CCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred CCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 5668899999998 54 7899999999999999987542 12578899999999999976
Q ss_pred CCCccceEEEec-cccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--Ee---ecCce--EEEEEcCCCCEEEE
Q psy9316 152 KGDLNKEVVYRG-HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IA---TKGEN--INITWAPNGNTIAV 223 (264)
Q Consensus 152 ~~~~~~~~~~~~-h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~---~~~~~--~~v~~sp~g~~la~ 223 (264)
..... ..+.. |..+|.+++|+|+ +.+|++++ |+.|++||+++.+... .. +...+ .+++|+|+|++|++
T Consensus 202 ~~~~~--~~~~~~h~~~v~~l~fs~~-g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 277 (343)
T 3lrv_A 202 PDQAS--SRFPVDEEAKIKEVKFADN-GYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIA 277 (343)
T ss_dssp TTSCC--EECCCCTTSCEEEEEECTT-SSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEE
T ss_pred CCCCc--cEEeccCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEE
Confidence 54321 24555 9999999999985 57888888 5599999999876421 11 11122 35999999999999
Q ss_pred eeC-CCeEEEEEcccCCCCCCC----cccCcccceeeeeec
Q psy9316 224 GNK-EDLVTFIDVVKSLPPRER----TLTSRGHLMETRSLW 259 (264)
Q Consensus 224 gs~-d~~i~~~d~~~~~~~~~~----~~~~~~h~~~~~~~~ 259 (264)
++. |+.+++|++.+.....+. ...+.+|..+++.+.
T Consensus 278 ~s~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 318 (343)
T 3lrv_A 278 YSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMD 318 (343)
T ss_dssp EETTTTEEEEEEECTTTCSEEEEEEEECCC----CCCCEEE
T ss_pred ecCCCCcEEEEEEcccccceEecCceeEecCccccccceeE
Confidence 998 999999998765443333 345556666665543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=192.04 Aligned_cols=220 Identities=12% Similarity=0.130 Sum_probs=160.8
Q ss_pred CceEeecCCCeeEEEeecCceEEeccccc---c--c-cccc-cCCCCEEEEEECCCCCeEEEEECCCcEEEEEecc--CC
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTHN---D--I-KEYQ-AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDK--KG 84 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~--~-~~~~-~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~--~~ 84 (264)
....+.|..+.++++++.|+.+++|+... . . ..+. .|.+.|.+++|+|++++|++|+.||.|++|++.. .+
T Consensus 67 ~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 146 (437)
T 3gre_A 67 TSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQE 146 (437)
T ss_dssp EEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEET
T ss_pred EEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCC
Confidence 33467773445678899999999997644 1 1 1222 6999999999999999999999999999999852 12
Q ss_pred CCcccEEEec------------ccccEEeEEE--ecCCCCeEEEEeCCCcEEEEECCCCCc-------------------
Q psy9316 85 DLNKEVVYRG------------HTGSVDQLCW--HATNPDLLSTASGDKTVRIWDARTQKS------------------- 131 (264)
Q Consensus 85 ~~~~~~~~~~------------h~~~v~~i~~--~~~~~~~l~s~s~dg~i~vwd~~~~~~------------------- 131 (264)
... ..... +...+.++.+ ++ ++.++++++.||.|++||+++++.
T Consensus 147 ~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 223 (437)
T 3gre_A 147 SEV--KFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID 223 (437)
T ss_dssp TEE--EEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC
T ss_pred cee--eccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC
Confidence 211 11111 3445666653 34 457899999999999999987542
Q ss_pred --ceEEEeecCCCcEEEEEeccCCCccceEEEe-ccccceeeEEEcCC---CCCEEEEEeCCCcEEEEeCCCCcceeEe-
Q psy9316 132 --QIMLASGSFDKSVAIFALDKKGDLNKEVVYR-GHTGSVDQLCWHAT---NPDLLSTASGDKTVRIWDARTQKSQIIA- 204 (264)
Q Consensus 132 --~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~-~h~~~i~~i~~~~~---~~~~i~s~~~dg~i~iwD~~t~~~~~~~- 204 (264)
...+++|+.|+.|.+|+++... ....+. .|..+|.+++|+|. ++.+|++++.||.|++||+++++.....
T Consensus 224 ~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 300 (437)
T 3gre_A 224 EECCVLILGTTRGIIDIWDIRFNV---LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFI 300 (437)
T ss_dssp TTSCEEEEEETTSCEEEEETTTTE---EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEEcCCcc---EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEE
Confidence 1257889999999999987532 122333 67789999988874 4558999999999999999987642211
Q ss_pred ---------------------------ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 205 ---------------------------TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 205 ---------------------------~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
+...+.+++|+ ++++|++|+.|+.|++||+.++..
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 301 NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred cCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence 22236778999 789999999999999999886543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=187.90 Aligned_cols=213 Identities=15% Similarity=0.206 Sum_probs=169.1
Q ss_pred eEeecCCCeeEEEeecCceEEeccc-cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNT-HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG 94 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~ 94 (264)
..+.|.+. +++++..|+.+++|+. ...+..+..|.+.|.+++|+|++++|++++.|+.|++|++.... ....+..
T Consensus 114 ~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~ 189 (425)
T 1r5m_A 114 LAWSHDGN-SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT---VMQHFEL 189 (425)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE---EEEEECC
T ss_pred EEEcCCCC-EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc---EEEEeec
Confidence 35666554 5678899999999974 35567788999999999999999999999999999999986422 2233445
Q ss_pred cccc---------------EEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-------------------eEEEeecC
Q psy9316 95 HTGS---------------VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-------------------IMLASGSF 140 (264)
Q Consensus 95 h~~~---------------v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------------~~~~~~~~ 140 (264)
+... +.+++|++. ..+++++.||.|++||+++++.. ..+++++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 267 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD 267 (425)
T ss_dssp C---------------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred cccCccceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC
Confidence 5554 889999874 46888999999999999875321 25788899
Q ss_pred CCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE--eecCceEEEEEcCCC
Q psy9316 141 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII--ATKGENINITWAPNG 218 (264)
Q Consensus 141 d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~--~~~~~~~~v~~sp~g 218 (264)
|+.|.+|+++.... ...+..|...|.+++|+|++ ++++++.||.|++||+++.+.... .+...+.+++|+|++
T Consensus 268 d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~ 342 (425)
T 1r5m_A 268 DGTLRIWHGGNGNS---QNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG 342 (425)
T ss_dssp TSCEEEECSSSBSC---SEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS
T ss_pred CCEEEEEECCCCcc---ceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC
Confidence 99999999865332 23456788999999999865 889999999999999998875332 234578899999999
Q ss_pred CEEEEeeCCCeEEEEEcccCC
Q psy9316 219 NTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 219 ~~la~gs~d~~i~~~d~~~~~ 239 (264)
++|++++.|+.|++||++.+.
T Consensus 343 ~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 343 QKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp SEEEEEETTSCEEEEECHHHH
T ss_pred CEEEEEECCCeEEEEECCCCc
Confidence 999999999999999998654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-24 Score=181.47 Aligned_cols=191 Identities=14% Similarity=0.204 Sum_probs=152.5
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEE
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~v 123 (264)
...+.+|.+.|.+++|+|++++|++++.||.|++|++... .....+.+|...|.+++|+|+ +.++++++.||.|++
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSIKL 100 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC---CEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---hhhhhhhhcCCcEEEEEEcCC-CCEEEEEeCCCeEEE
Confidence 3457899999999999999999999999999999998642 233457789999999999985 478999999999999
Q ss_pred EECCCCCcc------------------eEEEeecCC-----CcEEEEEeccCCCcc--------ceEEEecccc--ceee
Q psy9316 124 WDARTQKSQ------------------IMLASGSFD-----KSVAIFALDKKGDLN--------KEVVYRGHTG--SVDQ 170 (264)
Q Consensus 124 wd~~~~~~~------------------~~~~~~~~d-----~~i~i~~~~~~~~~~--------~~~~~~~h~~--~i~~ 170 (264)
||+++++.. ..+++++.+ +.+.+|+++...... ....+..|.. .+.+
T Consensus 101 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 101 WDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred EECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 999876432 245666667 999999987654321 1123345555 8999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEeCCC-Cccee--EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 171 LCWHATNPDLLSTASGDKTVRIWDART-QKSQI--IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 171 i~~~~~~~~~i~s~~~dg~i~iwD~~t-~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
++|+|+ +.++++++.||.|++||+++ ..... ..+...+.+++|+|++++|++++.|+.|++||++.+.
T Consensus 181 ~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 181 AGWSTK-GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp EEECGG-GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEcCC-CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence 999985 56888999999999999998 34322 2345678899999999999999999999999987643
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-23 Score=183.58 Aligned_cols=228 Identities=12% Similarity=0.173 Sum_probs=171.3
Q ss_pred eEeecCCCCC--ceEeecC---CC---eeEEEeecCceEEecccc--cc-----ccccccC-----CCCEEEEEEC----
Q psy9316 5 VIQFHTPKSP--EYKLLPS---GS---QFHLVCKIDDYVKHFNTH--ND-----IKEYQAH-----GSKVHSVAWS---- 60 (264)
Q Consensus 5 ~~~~~~~~~~--~~~~~~~---~~---~~~~~~~~d~~~~~~~~~--~~-----~~~~~~h-----~~~V~~l~~s---- 60 (264)
...+..+..+ ...+.|. .+ .++++++.|+.+++|+.. .. +..+..| .+.|.+++|+
T Consensus 55 ~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 134 (397)
T 1sq9_A 55 SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 134 (397)
T ss_dssp EEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred ceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC
Confidence 3444444443 3355665 13 566788999999999753 33 6677888 5899999999
Q ss_pred CCCCe-EEEEECCCcEEEEEecc------CCCCc--ccEEE-------ecccccEEeEEEecCCCCeEEEEeCCCcEEEE
Q psy9316 61 CDGRR-LASGSFDKSVAIFALDK------KGDLN--KEVVY-------RGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124 (264)
Q Consensus 61 ~~g~~-l~s~s~dg~i~v~~~~~------~~~~~--~~~~~-------~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vw 124 (264)
|++++ |++++.||.|++|++.. ..... ....+ ..|...|.+++|+|++ ++++++.||.|++|
T Consensus 135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~ 212 (397)
T 1sq9_A 135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQIS 212 (397)
T ss_dssp ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEE
T ss_pred CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEE
Confidence 99999 99999999999999976 32221 11134 3488899999999965 88999999999999
Q ss_pred ECCCCCc-------------------------ceEEEeecCC---CcEEEEEeccCCCccceEEEec-------------
Q psy9316 125 DARTQKS-------------------------QIMLASGSFD---KSVAIFALDKKGDLNKEVVYRG------------- 163 (264)
Q Consensus 125 d~~~~~~-------------------------~~~~~~~~~d---~~i~i~~~~~~~~~~~~~~~~~------------- 163 (264)
|+++.+. ...+++++.| +.|.+|+++... ....+..
T Consensus 213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~ 289 (397)
T 1sq9_A 213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE---RIGSLSVPTHSSQASLGEFA 289 (397)
T ss_dssp ETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC---EEEEECBC--------CCBS
T ss_pred ECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc---ccceeccCcccccccccccc
Confidence 9875321 1146778888 999999986542 2234556
Q ss_pred cccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee-----------------------cCceEEEEEcCCC--
Q psy9316 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT-----------------------KGENINITWAPNG-- 218 (264)
Q Consensus 164 h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~-----------------------~~~~~~v~~sp~g-- 218 (264)
|...|.+++|+|+ +.+|++++.||.|++||+++.+...... ...+.+++|+|+|
T Consensus 290 ~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~ 368 (397)
T 1sq9_A 290 HSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWR 368 (397)
T ss_dssp BSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTS
T ss_pred cCCcEEEEEECCC-CCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccc
Confidence 8899999999985 5689999999999999999887533322 5568899999999
Q ss_pred --------CEEEEeeCCCeEEEEEcccC
Q psy9316 219 --------NTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 219 --------~~la~gs~d~~i~~~d~~~~ 238 (264)
++|++|+.|+.|++||+.++
T Consensus 369 ~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 369 SGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp BSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccccceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998753
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=206.29 Aligned_cols=193 Identities=20% Similarity=0.359 Sum_probs=154.9
Q ss_pred cccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCC-CCeEEEEeCCCcEEE
Q psy9316 45 KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN-PDLLSTASGDKTVRI 123 (264)
Q Consensus 45 ~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~~l~s~s~dg~i~v 123 (264)
..+.+|.+.|.+++|+|++++|++|+.||.|++|++.. +.......+.+|.+.|.+++|++.. ++++++|+.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~-~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEET-TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCC-CCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45789999999999999999999999999999999863 2223334577899999999998752 579999999999999
Q ss_pred EECCCCC---------------------c--ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCC----
Q psy9316 124 WDARTQK---------------------S--QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT---- 176 (264)
Q Consensus 124 wd~~~~~---------------------~--~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~---- 176 (264)
||+++++ . ...+++|+.|+.|.+|+++...... ...+.+|...|.++.|+|.
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~-~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC-CEEEECCSSCEEEEEECCCC---
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc-eeEeecCCCceEEEEecCccccc
Confidence 9987753 1 2367889999999999987653322 3356789999999999995
Q ss_pred --------CCCEEEEEeCCCcEEEEeCCCCcce------eEeecCceEEEEEcCC---CCEEEEeeCCCeEEEEEcccCC
Q psy9316 177 --------NPDLLSTASGDKTVRIWDARTQKSQ------IIATKGENINITWAPN---GNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 177 --------~~~~i~s~~~dg~i~iwD~~t~~~~------~~~~~~~~~~v~~sp~---g~~la~gs~d~~i~~~d~~~~~ 239 (264)
++.++++++.||.|++||+++.... ...+...+.+++|+|+ ++++++|+.|+.|++||++.+.
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 4678899999999999999877421 1123566899999999 9999999999999999998754
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-24 Score=189.68 Aligned_cols=222 Identities=16% Similarity=0.320 Sum_probs=167.5
Q ss_pred eecCCCCCceEeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCC
Q psy9316 7 QFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG 84 (264)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~ 84 (264)
.+.++..+-..+-. .+...++++.|+.+++|+. .+.+..+.+|.+.|.+++|+ ++.|++|+.||.|++||+....
T Consensus 168 ~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~ 244 (435)
T 1p22_A 168 ILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPT 244 (435)
T ss_dssp EECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSS
T ss_pred EEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCC
Confidence 34444444444444 4456778999999999975 45677888999999999997 5699999999999999987644
Q ss_pred CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-----------------eEEEeecCCCcEEEE
Q psy9316 85 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-----------------IMLASGSFDKSVAIF 147 (264)
Q Consensus 85 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------------~~~~~~~~d~~i~i~ 147 (264)
.......+.+|...|.+++| ++.++++++.||.|++||+++++.. ..+++|+.|+.|.+|
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iw 321 (435)
T 1p22_A 245 DITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW 321 (435)
T ss_dssp CCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred CceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEE
Confidence 33322456789999999999 3478999999999999999876421 257889999999999
Q ss_pred EeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc---------c--eeEeecCceEEEEEcC
Q psy9316 148 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK---------S--QIIATKGENINITWAP 216 (264)
Q Consensus 148 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~---------~--~~~~~~~~~~~v~~sp 216 (264)
+++... ....+.+|...|.++.| ++.++++|+.||.|++||+++.. . ....+.+.+.+++|
T Consensus 322 d~~~~~---~~~~~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-- 393 (435)
T 1p22_A 322 DIECGA---CLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-- 393 (435)
T ss_dssp ETTTCC---EEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--
T ss_pred ECCCCC---EEEEEeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--
Confidence 987543 23456789999999998 35789999999999999997543 2 11234456788888
Q ss_pred CCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 217 NGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 217 ~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
++++|++|+.|+.|++||+.+.....
T Consensus 394 ~~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 394 DEFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp CSSCEEECCSSSEEEEEC--------
T ss_pred CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 78999999999999999998755443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-24 Score=188.71 Aligned_cols=217 Identities=15% Similarity=0.237 Sum_probs=167.2
Q ss_pred CceEeecCCCeeEEEeecCceEEeccccc---------cccccccCCCCEEEEEECCCC-CeEEEEECCCcEEEEEeccC
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTHN---------DIKEYQAHGSKVHSVAWSCDG-RRLASGSFDKSVAIFALDKK 83 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~~~~h~~~V~~l~~s~~g-~~l~s~s~dg~i~v~~~~~~ 83 (264)
....+.|.++.++++++.|+.+++|+... .+..+.+|.+.|.+++|+|++ ++|++++.|+.|++||+...
T Consensus 85 ~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 164 (402)
T 2aq5_A 85 LDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG 164 (402)
T ss_dssp EEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC
Confidence 44577774455778899999999997643 466788999999999999998 69999999999999998642
Q ss_pred CCCcccEEE--ecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc---------------------ceEEEee--
Q psy9316 84 GDLNKEVVY--RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---------------------QIMLASG-- 138 (264)
Q Consensus 84 ~~~~~~~~~--~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---------------------~~~~~~~-- 138 (264)
.....+ ..|...|.+++|+|++ .++++++.||.|++||+++++. ...+++|
T Consensus 165 ---~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 240 (402)
T 2aq5_A 165 ---AAVLTLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240 (402)
T ss_dssp ---EEEEEECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC
T ss_pred ---CccEEEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc
Confidence 222345 6799999999999954 7888999999999999986431 1245666
Q ss_pred -cCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc---eeEee--cCceEEE
Q psy9316 139 -SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---QIIAT--KGENINI 212 (264)
Q Consensus 139 -~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~---~~~~~--~~~~~~v 212 (264)
+.|+.|.+|+++....... .....|...+..++|+|++..++++++.||.|++||+.+++. .+..+ ...+.++
T Consensus 241 ~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~ 319 (402)
T 2aq5_A 241 RMSERQVALWDTKHLEEPLS-LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGM 319 (402)
T ss_dssp TTCCEEEEEEETTBCSSCSE-EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEE
T ss_pred CCCCceEEEEcCccccCCce-EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccce
Confidence 6899999999876443221 122356778999999997655556677899999999998773 22222 3568899
Q ss_pred EEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 213 TWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 213 ~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
+|+|++.++++ .++.+++|++..
T Consensus 320 ~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 320 GYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp EECCGGGSCGG--GTEEEEEEEEET
T ss_pred EEeccccccee--cceeEEEEEcCC
Confidence 99999998864 567999999875
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-24 Score=183.50 Aligned_cols=193 Identities=15% Similarity=0.236 Sum_probs=132.3
Q ss_pred ccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCC
Q psy9316 40 THNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 119 (264)
Q Consensus 40 ~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg 119 (264)
+...+..+..|.+.|.+++|+|||++|++|+.|+ +++|+++.. .. ....+...+..+++.+....++++++.|+
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV---AH--IMSQEMRHLSKVRMLHRTNYVAFVTGVKE 81 (355)
T ss_dssp -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE---EE--EEEEECSCCCEEEECTTSSEEEEECSSTT
T ss_pred ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc---ce--eeeeecCCeEEEEEcCCCCEEEEEECCcc
Confidence 3445556788999999999999999999988765 789997631 11 11122223555666665544445677777
Q ss_pred cEEEEECCCCCcce-----------------------------------------------------EEEe--ecCCCcE
Q psy9316 120 TVRIWDARTQKSQI-----------------------------------------------------MLAS--GSFDKSV 144 (264)
Q Consensus 120 ~i~vwd~~~~~~~~-----------------------------------------------------~~~~--~~~d~~i 144 (264)
+|++||+++++... .++. |+.||.|
T Consensus 82 ~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v 161 (355)
T 3vu4_A 82 VVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQI 161 (355)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCE
T ss_pred EEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEE
Confidence 88888876543110 1122 6778888
Q ss_pred EEEEeccCCCc------------cc-eEEEeccccceeeEEEcCCCCCEEEEEeCCCc-EEEEeCCCCcceeEe----ec
Q psy9316 145 AIFALDKKGDL------------NK-EVVYRGHTGSVDQLCWHATNPDLLSTASGDKT-VRIWDARTQKSQIIA----TK 206 (264)
Q Consensus 145 ~i~~~~~~~~~------------~~-~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~-i~iwD~~t~~~~~~~----~~ 206 (264)
.+|+++..... .+ ...+.+|...|.+++|+|+ +.+|++++.||+ |++||+++++..... +.
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~-g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~ 240 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK-SDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR 240 (355)
T ss_dssp EEEECCC------------------CCEEECCCSSCEEEEEECTT-SSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC
T ss_pred EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 88887643210 01 3467899999999999994 579999999998 999999998753322 45
Q ss_pred CceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 207 GENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 207 ~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
..+.+++|+|+|++|++|+.|+.|++||++...
T Consensus 241 ~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 241 ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp SCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred CcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 678999999999999999999999999997643
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-24 Score=189.59 Aligned_cols=187 Identities=16% Similarity=0.284 Sum_probs=144.9
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCC--------CcccEEEeccc------------ccEEeEEEecCC
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD--------LNKEVVYRGHT------------GSVDQLCWHATN 108 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~--------~~~~~~~~~h~------------~~v~~i~~~~~~ 108 (264)
.|.+.|.+++|+|+|++|++|+.||.|++|++..... ......+.+|. ..|.+++|+|.+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 5678999999999999999999999999999875331 11234567898 889999999965
Q ss_pred C-CeEEEEeCCCcEEEEECCCCC---------------------------------------------------------
Q psy9316 109 P-DLLSTASGDKTVRIWDARTQK--------------------------------------------------------- 130 (264)
Q Consensus 109 ~-~~l~s~s~dg~i~vwd~~~~~--------------------------------------------------------- 130 (264)
. .++++++.||.|++||+....
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 3 588899999999999975411
Q ss_pred --cceEEEeecCCCcEEEEEeccCCCccceE-----EEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc---
Q psy9316 131 --SQIMLASGSFDKSVAIFALDKKGDLNKEV-----VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--- 200 (264)
Q Consensus 131 --~~~~~~~~~~d~~i~i~~~~~~~~~~~~~-----~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--- 200 (264)
....++++ .|+.|.+|+++..+...... .+.+|...|.+++|+|++..+|++++.||.|++||+++.+.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 01246777 79999999986322111110 24578899999999997668999999999999999998764
Q ss_pred --eeE-eecC------------ceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 201 --QII-ATKG------------ENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 201 --~~~-~~~~------------~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
... .+.. .+.+++|+|+|++|++++. +.|++||++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 222 1222 6889999999999999998 9999999975
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-23 Score=190.79 Aligned_cols=234 Identities=16% Similarity=0.223 Sum_probs=175.8
Q ss_pred eEeecCCCeeEEEeecCceEEeccc--cccccccccCCC---CEEEEEECCC-CCeEEEEECCCcEEEEEeccCCCCccc
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGS---KVHSVAWSCD-GRRLASGSFDKSVAIFALDKKGDLNKE 89 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~---~V~~l~~s~~-g~~l~s~s~dg~i~v~~~~~~~~~~~~ 89 (264)
..+.|.+....++++.|+.+++|+. .+.+..+.+|.+ .|.+++|+|+ +++|++++.|+.|++|++.... ..
T Consensus 166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~ 242 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE---FL 242 (615)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC---EE
T ss_pred EEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC---Ee
Confidence 3566666556778999999999975 356677889999 9999999999 9999999999999999986422 22
Q ss_pred EEE-e---cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc----------------------eEEEeecCCCc
Q psy9316 90 VVY-R---GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ----------------------IMLASGSFDKS 143 (264)
Q Consensus 90 ~~~-~---~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~----------------------~~~~~~~~d~~ 143 (264)
..+ . .|...|.+++|+ ++.++++++.||.|++||+++++.. ..+++++.|+.
T Consensus 243 ~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 320 (615)
T 1pgu_A 243 KYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 320 (615)
T ss_dssp EECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSC
T ss_pred EEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCC
Confidence 334 4 799999999998 5578999999999999999864311 12444455555
Q ss_pred EEEEEecc------------------------------------------------------------------------
Q psy9316 144 VAIFALDK------------------------------------------------------------------------ 151 (264)
Q Consensus 144 i~i~~~~~------------------------------------------------------------------------ 151 (264)
|.+|+++.
T Consensus 321 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~ 400 (615)
T 1pgu_A 321 LNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGI 400 (615)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTE
T ss_pred EEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEc
Confidence 55554321
Q ss_pred -----------------------------------------------------------------CCCcc-------ce-
Q psy9316 152 -----------------------------------------------------------------KGDLN-------KE- 158 (264)
Q Consensus 152 -----------------------------------------------------------------~~~~~-------~~- 158 (264)
++.+. ..
T Consensus 401 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~ 480 (615)
T 1pgu_A 401 TKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS 480 (615)
T ss_dssp EEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEE
T ss_pred ccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcccc
Confidence 00000 00
Q ss_pred -EEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE--e-ecCceEEEEEcC----------CCCEEEEe
Q psy9316 159 -VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII--A-TKGENINITWAP----------NGNTIAVG 224 (264)
Q Consensus 159 -~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~--~-~~~~~~~v~~sp----------~g~~la~g 224 (264)
..+..|...|.+++|+|+ +.+|++++.||.|++||+.+.+.... . +...+.+++|+| ++++|++|
T Consensus 481 ~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~ 559 (615)
T 1pgu_A 481 FDLKTPLRAKPSYISISPS-ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 559 (615)
T ss_dssp EECSSCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE
T ss_pred ccccCCccCceEEEEECCC-CCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEE
Confidence 123457788999999985 57899999999999999998875332 2 556789999999 99999999
Q ss_pred eCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 225 NKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 225 s~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
+.|+.|++||+..+. +...++++|...+.+|
T Consensus 560 ~~dg~i~iw~~~~~~---~~~~~~~~h~~~v~~l 590 (615)
T 1pgu_A 560 SLDTNIFIYSVKRPM---KIIKALNAHKDGVNNL 590 (615)
T ss_dssp ETTSCEEEEESSCTT---CCEEETTSSTTCEEEE
T ss_pred cCCCcEEEEECCCCc---eechhhhcCccceEEE
Confidence 999999999987643 3345678888877765
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=180.97 Aligned_cols=212 Identities=18% Similarity=0.241 Sum_probs=153.5
Q ss_pred cccccccccCCCCEEEEEECCC---CCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeC
Q psy9316 41 HNDIKEYQAHGSKVHSVAWSCD---GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG 117 (264)
Q Consensus 41 ~~~~~~~~~h~~~V~~l~~s~~---g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~ 117 (264)
.+.++.+.+|.+.|.+++|+|+ |++|++|+.||.|++|++...+. .....+.+|...|.+++|+|+ +.+|++++.
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~ 106 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-TIPKAQQMHTGPVLDVCWSDD-GSKVFTASC 106 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-EEEEEEEECSSCEEEEEECTT-SSEEEEEET
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-eeEEEeccccCCEEEEEECcC-CCEEEEEcC
Confidence 4566778999999999999998 69999999999999999975332 222457789999999999994 478999999
Q ss_pred CCcEEEEECCCCCc--------------------ceEEEeecCCCcEEEEEeccCCCccceE------------------
Q psy9316 118 DKTVRIWDARTQKS--------------------QIMLASGSFDKSVAIFALDKKGDLNKEV------------------ 159 (264)
Q Consensus 118 dg~i~vwd~~~~~~--------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~------------------ 159 (264)
||.|++||+++++. ...+++++.|+.|.+|+++.........
T Consensus 107 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVA 186 (368)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEE
T ss_pred CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEE
Confidence 99999999987542 1247888999999999987543221100
Q ss_pred -------------------EE-eccccceeeEEEcCC---CCCEEEEEeCCCcEEEEeCCCCcc-----eeEeecC----
Q psy9316 160 -------------------VY-RGHTGSVDQLCWHAT---NPDLLSTASGDKTVRIWDARTQKS-----QIIATKG---- 207 (264)
Q Consensus 160 -------------------~~-~~h~~~i~~i~~~~~---~~~~i~s~~~dg~i~iwD~~t~~~-----~~~~~~~---- 207 (264)
.. ..+...+..+.+.+. ....+++++.||.|++||++.... ....+..
T Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence 00 001112233333322 123388999999999999998642 1122222
Q ss_pred --------ceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 208 --------ENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 208 --------~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
.+.+++|+|++++|++|+.|+.|++||+.++.. ..++.+|...+++|
T Consensus 267 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~ 321 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK----LKTSEQLDQPISAC 321 (368)
T ss_dssp -CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE----EEECCCCSSCEEEE
T ss_pred ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE----EEEecCCCCCceEE
Confidence 478999999999999999999999999875432 34566777766654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-23 Score=183.32 Aligned_cols=224 Identities=20% Similarity=0.276 Sum_probs=170.9
Q ss_pred EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG 94 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~ 94 (264)
.+.+.+ ...++++.|+.+++|+. .+.+..+.+|.+.|.+++|+ +++|++|+.||.|++|++... .....+.+
T Consensus 124 ~~~~~g-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~ 197 (445)
T 2ovr_B 124 CLQFCG-NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG---ECIHTLYG 197 (445)
T ss_dssp EEEEET-TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT---EEEEEECC
T ss_pred EEEEcC-CEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC---cEEEEECC
Confidence 455555 45678999999999975 46677889999999999997 679999999999999998642 23345778
Q ss_pred ccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-----------------eEEEeecCCCcEEEEEeccCCCccc
Q psy9316 95 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-----------------IMLASGSFDKSVAIFALDKKGDLNK 157 (264)
Q Consensus 95 h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------------~~~~~~~~d~~i~i~~~~~~~~~~~ 157 (264)
|...|.++.|++ ..+++++.||.|++||+++++.. ..+++++.|+.|.+|+++... .
T Consensus 198 h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~ 271 (445)
T 2ovr_B 198 HTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET---C 271 (445)
T ss_dssp CSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE---E
T ss_pred CCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCc---E
Confidence 999999999963 57999999999999999876422 146788999999999986532 2
Q ss_pred eEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--ecCceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q psy9316 158 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--TKGENINITWAPNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 158 ~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~ 235 (264)
...+.+|...|.++.| ++..+++++.||.|++||+++++..... +...+.++.+ +++++++|+.|+.|++||+
T Consensus 272 ~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 272 LHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp EEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred eEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEEC
Confidence 3356789999999998 4568999999999999999988753332 2334555554 6789999999999999998
Q ss_pred ccCCCCCCCcccCcccceeeeee
Q psy9316 236 VKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 236 ~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
+.+.... ......+|...+.++
T Consensus 347 ~~~~~~~-~~~~~~~~~~~v~~~ 368 (445)
T 2ovr_B 347 KTGQCLQ-TLQGPNKHQSAVTCL 368 (445)
T ss_dssp TTCCEEE-EECSTTSCSSCEEEE
T ss_pred CCCcEEE-EEccCCCCCCCEEEE
Confidence 7643321 111223366666655
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-23 Score=183.35 Aligned_cols=216 Identities=22% Similarity=0.309 Sum_probs=168.7
Q ss_pred eecCCCCCceEeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCC
Q psy9316 7 QFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG 84 (264)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~ 84 (264)
.+..+..+-..+...+. ..++++.|+.++.|+. .+.+..+.+|...|.+++| ++++|++|+.||.|++||+...
T Consensus 194 ~~~~h~~~v~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~- 269 (445)
T 2ovr_B 194 TLYGHTSTVRCMHLHEK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE- 269 (445)
T ss_dssp EECCCSSCEEEEEEETT-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT-
T ss_pred EECCCCCcEEEEEecCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC-
Confidence 34444444444444443 4678899999999975 4566788899999999999 7899999999999999998652
Q ss_pred CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-----------------eEEEeecCCCcEEEE
Q psy9316 85 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-----------------IMLASGSFDKSVAIF 147 (264)
Q Consensus 85 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------------~~~~~~~~d~~i~i~ 147 (264)
.....+.+|...|.++.| ++.++++++.||.|++||+++++.. ..+++++.|+.|.+|
T Consensus 270 --~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 270 --TCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 344 (445)
T ss_dssp --EEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred --cEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEE
Confidence 223446789999999998 4578999999999999999876421 257889999999999
Q ss_pred EeccCCCccceEEEec---cccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe-------ecCceEEEEEcCC
Q psy9316 148 ALDKKGDLNKEVVYRG---HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA-------TKGENINITWAPN 217 (264)
Q Consensus 148 ~~~~~~~~~~~~~~~~---h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~-------~~~~~~~v~~sp~ 217 (264)
+++.... ...+.. |...|.++.|+ +.++++++.||.|++||+++++..... +.+.+.+++|+|+
T Consensus 345 d~~~~~~---~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 418 (445)
T 2ovr_B 345 DIKTGQC---LQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 418 (445)
T ss_dssp ETTTCCE---EEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred ECCCCcE---EEEEccCCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC
Confidence 9865432 223343 78899999996 368999999999999999998753322 2345889999999
Q ss_pred CCEEEEeeCCCe----EEEEEccc
Q psy9316 218 GNTIAVGNKEDL----VTFIDVVK 237 (264)
Q Consensus 218 g~~la~gs~d~~----i~~~d~~~ 237 (264)
+.++++|+.||. +.+||...
T Consensus 419 ~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 419 KLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEEEcccCCCCccEEEEEECCC
Confidence 999999999997 99999764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.3e-24 Score=200.95 Aligned_cols=206 Identities=14% Similarity=0.219 Sum_probs=165.8
Q ss_pred cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEE
Q psy9316 43 DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122 (264)
Q Consensus 43 ~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~ 122 (264)
..+.+.+|.+.|.+++|+|++++|++++.||.|++|++... .....+..|...|.+++|+|++ .++++++.||.|+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ---VEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIR 80 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceEEEEecCCCcEEEEEEeCCC-CEEEEEeCCCeEE
Confidence 34567899999999999999999999999999999998642 2334567899999999999955 7899999999999
Q ss_pred EEECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEE
Q psy9316 123 IWDARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST 183 (264)
Q Consensus 123 vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s 183 (264)
+||+++++.. ..+++++.|+.|.+|+++.... ....+.+|...|.+++|+|.++..+++
T Consensus 81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA--LEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE--EEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce--EEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence 9999876421 2578899999999999875422 233567899999999999966679999
Q ss_pred EeCCCcEEEEeCCCCcceeEe--ec-CceEEEEEcC--CCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 184 ASGDKTVRIWDARTQKSQIIA--TK-GENINITWAP--NGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 184 ~~~dg~i~iwD~~t~~~~~~~--~~-~~~~~v~~sp--~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
++.||.|++||+++....... .. ..+..++|+| ++++|++|+.|+.|++||+..+.. ..++.+|...++++
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~~~v~~~ 234 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFA 234 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE----EEEEECCSSCEEEE
T ss_pred EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE----EEEEcCCCCCEEEE
Confidence 999999999999877643322 22 5678899999 999999999999999999875432 33456777666654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=178.94 Aligned_cols=200 Identities=11% Similarity=0.048 Sum_probs=152.8
Q ss_pred ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCC-eEEEEeCCCcEEEE
Q psy9316 46 EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD-LLSTASGDKTVRIW 124 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~-~l~s~s~dg~i~vw 124 (264)
...+|.+.|.+++|+|++++|++++.|+.|++|++..............|...|.+++|+|+ +. ++++++.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-SSEEEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC-CCcEEEEEcCCCeEEEE
Confidence 34589999999999999999999999999999999754322222345589999999999996 47 88999999999999
Q ss_pred EC-CCCCc-------------------ceEEEeecCCCcEEEEEecc---------CCCccceEEEeccccceeeEEEcC
Q psy9316 125 DA-RTQKS-------------------QIMLASGSFDKSVAIFALDK---------KGDLNKEVVYRGHTGSVDQLCWHA 175 (264)
Q Consensus 125 d~-~~~~~-------------------~~~~~~~~~d~~i~i~~~~~---------~~~~~~~~~~~~h~~~i~~i~~~~ 175 (264)
|+ ++++. ...+++++.|+.|.+|+++. ...... ..|...|.+++|+|
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~ 160 (342)
T 1yfq_A 85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN----TKVKNKIFTMDTNS 160 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS----SSSCCCEEEEEECS
T ss_pred EeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeE----EeeCCceEEEEecC
Confidence 99 65321 22577889999999999865 222221 23778999999987
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC-Ccce--eE--eecCceEEEEEcC-CCCEEEEeeCCCeEEEEEcccC--CCCCCCccc
Q psy9316 176 TNPDLLSTASGDKTVRIWDART-QKSQ--II--ATKGENINITWAP-NGNTIAVGNKEDLVTFIDVVKS--LPPRERTLT 247 (264)
Q Consensus 176 ~~~~~i~s~~~dg~i~iwD~~t-~~~~--~~--~~~~~~~~v~~sp-~g~~la~gs~d~~i~~~d~~~~--~~~~~~~~~ 247 (264)
+. +++++.|+.|++||+++ .... .. .+...+.+++|+| +++++++|+.|+.+++||.... ....+....
T Consensus 161 ~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 161 SR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp SE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred Cc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 43 88899999999999998 4421 11 2345688999999 9999999999999999998765 111233344
Q ss_pred Ccccce
Q psy9316 248 SRGHLM 253 (264)
Q Consensus 248 ~~~h~~ 253 (264)
+++|..
T Consensus 238 ~~~~~~ 243 (342)
T 1yfq_A 238 FRCHRL 243 (342)
T ss_dssp EECCCC
T ss_pred eecccc
Confidence 555543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-24 Score=203.97 Aligned_cols=184 Identities=13% Similarity=0.153 Sum_probs=147.8
Q ss_pred ccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECC
Q psy9316 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 127 (264)
Q Consensus 48 ~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~ 127 (264)
.+|.+.|.+++|+|++++||+|+.||+|++|+... ... .....|...|.+++|+| + ++|++++.|++|++||++
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~---~~~-~~~~~~~~~V~~l~fsp-g-~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ---VEV-VIKLEDRSAIKEMRFVK-G-IYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTT---CEE-EEECSSCCCEEEEEEET-T-TEEEEEETTCEEEEEETT
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCC---cEE-EEEcCCCCCEEEEEEcC-C-CEEEEEECcCeEEEEECC
Confidence 38999999999999999999999999999998643 111 12235788999999999 5 589999999999999998
Q ss_pred CCCcc------------------eEEEeecCCCcEEEEEeccCCCccce---------EEEeccccceeeEEEcCCCCCE
Q psy9316 128 TQKSQ------------------IMLASGSFDKSVAIFALDKKGDLNKE---------VVYRGHTGSVDQLCWHATNPDL 180 (264)
Q Consensus 128 ~~~~~------------------~~~~~~~~d~~i~i~~~~~~~~~~~~---------~~~~~h~~~i~~i~~~~~~~~~ 180 (264)
+++.. ..+++|+.|+.|++|+++.... ... ..+.+|..+|.+++|+|.+...
T Consensus 88 ~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~-~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~ 166 (902)
T 2oaj_A 88 SQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL-SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT 166 (902)
T ss_dssp TCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE-EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred CCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc-ccceeccccccccccccCCCCeEEEEEccCCCCE
Confidence 75421 2578899999999999864321 100 1235788999999999976678
Q ss_pred EEEEeCCCcEEEEeCCCCcceeEe--e------------------cCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 181 LSTASGDKTVRIWDARTQKSQIIA--T------------------KGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 181 i~s~~~dg~i~iwD~~t~~~~~~~--~------------------~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
+++++.||.| +||+++.+..... + ...+.+++|+|+|++|++|+.|+.|++||++++.
T Consensus 167 l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 167 VLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp EEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred EEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999 9999987643221 1 2458899999999999999999999999997654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-23 Score=182.92 Aligned_cols=194 Identities=15% Similarity=0.148 Sum_probs=153.4
Q ss_pred ceEeecCCCeeEEEeecCceEEecccc----ccccccc--cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCc-
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTH----NDIKEYQ--AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN- 87 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~--~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~- 87 (264)
...+.|.+..+.++++.|+.+++|+.. +.++.+. .|...|.+++|+|++++|++|+.||.+.+|++.......
T Consensus 107 ~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~ 186 (450)
T 2vdu_B 107 NLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF 186 (450)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc
Confidence 346677776655788899999999754 4555665 567899999999999999999999999999986543322
Q ss_pred ccEEEecccccEEeEEEecC--CCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccc
Q psy9316 88 KEVVYRGHTGSVDQLCWHAT--NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165 (264)
Q Consensus 88 ~~~~~~~h~~~v~~i~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~ 165 (264)
....+.+|...|.+++|+|+ ++.+|++++.|+.|++||+++++.... ...+|.
T Consensus 187 ~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-------------------------~~~~h~ 241 (450)
T 2vdu_B 187 TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK-------------------------WLFGHK 241 (450)
T ss_dssp CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE-------------------------ECCCCS
T ss_pred cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee-------------------------eecCCC
Confidence 22245689999999999996 146899999999999999986542211 134688
Q ss_pred cceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee---------------------------cCceEEEEEcCCC
Q psy9316 166 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT---------------------------KGENINITWAPNG 218 (264)
Q Consensus 166 ~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~---------------------------~~~~~~v~~sp~g 218 (264)
..|.+++|+ ++.+|++++.|+.|++||+++++...... ...+.+++|+|++
T Consensus 242 ~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 319 (450)
T 2vdu_B 242 HFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL 319 (450)
T ss_dssp SCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred CceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence 899999998 66899999999999999999887422221 1246789999999
Q ss_pred CEEEEee-CCCeEEEEEc
Q psy9316 219 NTIAVGN-KEDLVTFIDV 235 (264)
Q Consensus 219 ~~la~gs-~d~~i~~~d~ 235 (264)
++|++++ .|+.|++||+
T Consensus 320 ~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 320 PFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SEEEEEETTCSEEEEEEE
T ss_pred CEEEEEECCCCeEEEEEe
Confidence 9999999 8999999999
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-23 Score=203.62 Aligned_cols=217 Identities=18% Similarity=0.297 Sum_probs=173.8
Q ss_pred eEeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR 93 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~ 93 (264)
..+.|.+. +.++++.|+.+++|+. .+.+..+.+|.+.|.+++|+|++++|++++.|+.|++||+... .....+.
T Consensus 621 ~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~ 696 (1249)
T 3sfz_A 621 ACFSQDGQ-RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG---KLVHTYD 696 (1249)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE
T ss_pred EEECCCCC-EEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC---ceEEEEc
Confidence 36666664 5678899999999975 4567788899999999999999999999999999999998652 2334577
Q ss_pred cccccEEeEEEecCC-CCeEEEEeCCCcEEEEECCCCCcc-------------------eEEEeecCCCcEEEEEeccCC
Q psy9316 94 GHTGSVDQLCWHATN-PDLLSTASGDKTVRIWDARTQKSQ-------------------IMLASGSFDKSVAIFALDKKG 153 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~ 153 (264)
+|...|.+++|+|.+ ..++++++.||.|++||+++++.. ..+++++.|+.|.+|++....
T Consensus 697 ~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~ 776 (1249)
T 3sfz_A 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776 (1249)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTE
T ss_pred CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCc
Confidence 899999999999863 457889999999999999875421 257889999999999975431
Q ss_pred Cccc----------------------------------------------------eEEEeccccceeeEEEcCCCCCEE
Q psy9316 154 DLNK----------------------------------------------------EVVYRGHTGSVDQLCWHATNPDLL 181 (264)
Q Consensus 154 ~~~~----------------------------------------------------~~~~~~h~~~i~~i~~~~~~~~~i 181 (264)
.... .....+|...|..++|+|+ +.++
T Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l 855 (1249)
T 3sfz_A 777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY-DHLA 855 (1249)
T ss_dssp EEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSS-TTEE
T ss_pred ccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCC-CCEE
Confidence 1000 0011267788999999985 5688
Q ss_pred EEEeCCCcEEEEeCCCCccee--EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 182 STASGDKTVRIWDARTQKSQI--IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 182 ~s~~~dg~i~iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
++++.||.|++||+.++.... ..+...+.+++|+|+|++|++++.|+.+++||+..
T Consensus 856 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 856 VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 999999999999999876532 23456789999999999999999999999999875
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-23 Score=187.91 Aligned_cols=219 Identities=15% Similarity=0.216 Sum_probs=170.8
Q ss_pred CceEeecCCCeeEEEeecCceEEecccc------ccccccccCCCC-EEEEEECC--CCCeEEEEECCCcEEEEEeccCC
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTH------NDIKEYQAHGSK-VHSVAWSC--DGRRLASGSFDKSVAIFALDKKG 84 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~~~~~h~~~-V~~l~~s~--~g~~l~s~s~dg~i~v~~~~~~~ 84 (264)
....+.|.+.. ++++. ++.+++|+.. +....+.+|.+. |.+++|+| ++++|++|+.||.|++|++....
T Consensus 22 ~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~ 99 (615)
T 1pgu_A 22 THLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 99 (615)
T ss_dssp CCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred eEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCc
Confidence 34477777764 34444 8888888653 567788999999 99999999 99999999999999999986320
Q ss_pred -----CCcccEEEecccccEEeEEEecCCCCeEEEEeCC----CcEEEEECCCCC------------------cceEEEe
Q psy9316 85 -----DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD----KTVRIWDARTQK------------------SQIMLAS 137 (264)
Q Consensus 85 -----~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~d----g~i~vwd~~~~~------------------~~~~~~~ 137 (264)
.......+..|...|.+++|+|++ +++++++.+ +.|++||..... ....+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 178 (615)
T 1pgu_A 100 ESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 178 (615)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred ccccccccccchhhcccccEEEEEEeCCC-CEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEE
Confidence 112233466799999999999965 678888877 789999843210 0126888
Q ss_pred ecCCCcEEEEEeccCCCccceEEEecccc---ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE------eecCc
Q psy9316 138 GSFDKSVAIFALDKKGDLNKEVVYRGHTG---SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII------ATKGE 208 (264)
Q Consensus 138 ~~~d~~i~i~~~~~~~~~~~~~~~~~h~~---~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~------~~~~~ 208 (264)
++.|+.+.+|++... .....+..|.. .|.+++|+|+++.++++++.||.|++||+++++.... .+...
T Consensus 179 ~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 255 (615)
T 1pgu_A 179 VGDDGSVVFYQGPPF---KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG 255 (615)
T ss_dssp EETTTEEEEEETTTB---EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred EeCCCcEEEEeCCCc---ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCc
Confidence 999999999997542 22345677888 9999999996467999999999999999998875332 34567
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 209 NINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 209 ~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
+.+++|+ ++++|++++.|+.+++||++.+.
T Consensus 256 v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~ 285 (615)
T 1pgu_A 256 IFALSWL-DSQKFATVGADATIRVWDVTTSK 285 (615)
T ss_dssp EEEEEES-SSSEEEEEETTSEEEEEETTTTE
T ss_pred eEEEEEc-CCCEEEEEcCCCcEEEEECCCCc
Confidence 8899999 99999999999999999987543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=182.16 Aligned_cols=208 Identities=14% Similarity=0.214 Sum_probs=146.9
Q ss_pred eEeecCCCeeEEEeecCceEEeccccc-----cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccE
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTHN-----DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV 90 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~ 90 (264)
..+.|.+ .++++++.|+.+++|+... ....+.+|.+.|.+++|+|++++|++++.|+.|++|++..........
T Consensus 61 ~~~s~~~-~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 139 (377)
T 3dwl_C 61 VDWAPKS-NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK 139 (377)
T ss_dssp EEECTTT-CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCE
T ss_pred EEEeCCC-CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeee
Confidence 3566665 4667899999999997643 355677899999999999999999999999999999987644322234
Q ss_pred EEec-ccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEecccccee
Q psy9316 91 VYRG-HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169 (264)
Q Consensus 91 ~~~~-h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~ 169 (264)
.+.. |...|.+++|+|++ .++++++.|+.|++||++.............+..+.. ......+ .|...|.
T Consensus 140 ~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~v~ 209 (377)
T 3dwl_C 140 HLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPF--------NTVCAEY-PSGGWVH 209 (377)
T ss_dssp EECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCE--------EEEEECC-CCSSSEE
T ss_pred EeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccch--------hhhhhcc-cCCceEE
Confidence 4566 99999999999954 7899999999999999975431100000000000000 0011123 7888999
Q ss_pred eEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc------eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 170 QLCWHATNPDLLSTASGDKTVRIWDARTQKS------QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 170 ~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~------~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
+++|+|+ +.+|++++.||.|++||+++.+. ....+...+.+++|+|+|++|++|+.++.+ +|+..
T Consensus 210 ~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 210 AVGFSPS-GNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEECTT-SSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EEEECCC-CCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9999985 46888999999999999998764 122344568899999999999999977776 66654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=200.63 Aligned_cols=239 Identities=12% Similarity=0.125 Sum_probs=161.9
Q ss_pred ceEeecCCCeeEEEeecCceEEecccc--ccccccccC------------------CCCEEEEEECCCCCeEEEEECCCc
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAH------------------GSKVHSVAWSCDGRRLASGSFDKS 74 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h------------------~~~V~~l~~s~~g~~l~s~s~dg~ 74 (264)
...+.|.+....++++.|+.+ +|+.. +.++.+..| ...|.+++|+|+|++|++|+.|++
T Consensus 156 sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~ 234 (902)
T 2oaj_A 156 SIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS 234 (902)
T ss_dssp EEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred EEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence 446777655566788999999 99764 344555544 578999999999999999999999
Q ss_pred EEEEEeccCCCCcccEEE---e-------------cccccEEeEEEecC-------------------------------
Q psy9316 75 VAIFALDKKGDLNKEVVY---R-------------GHTGSVDQLCWHAT------------------------------- 107 (264)
Q Consensus 75 i~v~~~~~~~~~~~~~~~---~-------------~h~~~v~~i~~~~~------------------------------- 107 (264)
|++||+... .......+ . .|...|.+++|++.
T Consensus 235 i~lWd~~~g-~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~ 313 (902)
T 2oaj_A 235 LVFWDANSG-HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYT 313 (902)
T ss_dssp EEEEETTTC-CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEEC
T ss_pred EEEEECCCC-cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCC
Confidence 999998642 11100000 0 12234555555321
Q ss_pred -------------------------------------------------CCCeEEEEeCCCcEEEEECCCCC--------
Q psy9316 108 -------------------------------------------------NPDLLSTASGDKTVRIWDARTQK-------- 130 (264)
Q Consensus 108 -------------------------------------------------~~~~l~s~s~dg~i~vwd~~~~~-------- 130 (264)
++..+++++.||.+++||+.++.
T Consensus 314 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~ 393 (902)
T 2oaj_A 314 PRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLF 393 (902)
T ss_dssp CCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGS
T ss_pred CCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccC
Confidence 11134455566778888864331
Q ss_pred ----------------------------------------------------cceEEEeecCCCcEEEEEeccCCCcc--
Q psy9316 131 ----------------------------------------------------SQIMLASGSFDKSVAIFALDKKGDLN-- 156 (264)
Q Consensus 131 ----------------------------------------------------~~~~~~~~~~d~~i~i~~~~~~~~~~-- 156 (264)
....+++|+.|++|++|++... ...
T Consensus 394 ~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g-~~~~~ 472 (902)
T 2oaj_A 394 PQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHG-DIQDN 472 (902)
T ss_dssp CGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCC-TTTTT
T ss_pred CCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCc-cccCC
Confidence 1236788999999999998654 221
Q ss_pred ceEEE-------eccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc-----------------------------
Q psy9316 157 KEVVY-------RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS----------------------------- 200 (264)
Q Consensus 157 ~~~~~-------~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~----------------------------- 200 (264)
..... .+|...|.+++|+|+ +.+||+|+.||+|+|||+.+.+.
T Consensus 473 ~~~~~~l~~~~~~~h~~~V~svafspd-g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (902)
T 2oaj_A 473 ASFEVNLSRTLNKAKELAVDKISFAAE-TLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLV 551 (902)
T ss_dssp BCEEEEHHHHTTCSSSCCEEEEEEETT-TTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEE
T ss_pred ceEEeechhhcCCCCCCceeEEEecCC-CCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccc
Confidence 11111 178889999999995 57899999999999999976521
Q ss_pred ------------------eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCC-CcccCc-ccceeeeee
Q psy9316 201 ------------------QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRE-RTLTSR-GHLMETRSL 258 (264)
Q Consensus 201 ------------------~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~-~~~~~~-~h~~~~~~~ 258 (264)
.+..+.+.+.+++||||| +||+|+.|+.|++||++....... ....+. ||...|++|
T Consensus 552 ~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv 628 (902)
T 2oaj_A 552 DVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCI 628 (902)
T ss_dssp ECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEE
T ss_pred cccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEE
Confidence 111245678999999999 999999999999999865332211 112344 887766664
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=201.77 Aligned_cols=201 Identities=26% Similarity=0.420 Sum_probs=160.1
Q ss_pred ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEE
Q psy9316 46 EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd 125 (264)
.+.+|.+.|.+++|+|+|++|++|+.||+|++|++... .....+.+|...|.+++|+|++ .++++++.||.|++||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~---~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWD 685 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC---CEEEEeccCCCCEEEEEEecCC-CEEEEEeCCCeEEEEE
Confidence 46789999999999999999999999999999998653 2234577899999999999955 7899999999999999
Q ss_pred CCCCCc---------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEE
Q psy9316 126 ARTQKS---------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA 184 (264)
Q Consensus 126 ~~~~~~---------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~ 184 (264)
+++++. ...+++++.|+.|.+|+++... ....+.+|...|.+++|+|+ +.+++++
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~---~~~~~~~h~~~v~~~~~sp~-~~~l~s~ 761 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE---CRNTMFGHTNSVNHCRFSPD-DELLASC 761 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS---EEEEECCCSSCEEEEEECSS-TTEEEEE
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc---hhheecCCCCCEEEEEEecC-CCEEEEE
Confidence 987642 1257889999999999986543 23356789999999999985 5689999
Q ss_pred eCCCcEEEEeCCCCcceeE---------------------------------------------------------eecC
Q psy9316 185 SGDKTVRIWDARTQKSQII---------------------------------------------------------ATKG 207 (264)
Q Consensus 185 ~~dg~i~iwD~~t~~~~~~---------------------------------------------------------~~~~ 207 (264)
+.||.|++||+++...... .+..
T Consensus 762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 841 (1249)
T 3sfz_A 762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS 841 (1249)
T ss_dssp ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS
T ss_pred ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC
Confidence 9999999999976542110 1123
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 208 ENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 208 ~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
.+.+++|+|+++++++|+.|+.+++||+..+. ...++.+|...++++
T Consensus 842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~----~~~~~~~h~~~v~~v 888 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRL----KVADCRGHLSWVHGV 888 (1249)
T ss_dssp CCCEEEECSSTTEEEEECSSSCEEEEETTTTE----EEEEECCCSSCEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc----eeeecCCCccceEEE
Confidence 45678899999999999999999999987532 334566777766655
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-22 Score=182.61 Aligned_cols=176 Identities=11% Similarity=0.058 Sum_probs=138.4
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccc-----cEEeEEEecCCCCeEEEEeCCCcEEE
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG-----SVDQLCWHATNPDLLSTASGDKTVRI 123 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~-----~v~~i~~~~~~~~~l~s~s~dg~i~v 123 (264)
.|...|.+++|+|+|++||+++.||++++|+.+. ....+. |.. .|.+++|+|++ ++|++|+.||+|++
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkI 155 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQF 155 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEE
Confidence 5678899999999999999999999999998432 222344 554 49999999955 78999999999999
Q ss_pred EECCCCCc---------------c-------------eEEEeecCCCcEEEEEeccCCCccceEEE-eccccceeeEEEc
Q psy9316 124 WDARTQKS---------------Q-------------IMLASGSFDKSVAIFALDKKGDLNKEVVY-RGHTGSVDQLCWH 174 (264)
Q Consensus 124 wd~~~~~~---------------~-------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~-~~h~~~i~~i~~~ 174 (264)
||++.+.. . ..+++++.|+.+++|++..+.......++ .+|...|.+++|+
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs 235 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV 235 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence 99987631 0 01568888999999998654421111234 4788899999998
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCcc-eeE-eecCceEEEEE--cCCCCEEEEeeCCCeEEEEEcc
Q psy9316 175 ATNPDLLSTASGDKTVRIWDARTQKS-QII-ATKGENINITW--APNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 175 ~~~~~~i~s~~~dg~i~iwD~~t~~~-~~~-~~~~~~~~v~~--sp~g~~la~gs~d~~i~~~d~~ 236 (264)
+ ..+++++ +++|++||+.+++. ... .+...+..++| +|++..++++..||. ++|...
T Consensus 236 --g-~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 236 --D-YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp --T-TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred --C-CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 3 6888876 79999999998876 333 34556788999 999999999999999 999864
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-22 Score=168.40 Aligned_cols=197 Identities=20% Similarity=0.403 Sum_probs=149.4
Q ss_pred EEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-
Q psy9316 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ- 132 (264)
Q Consensus 54 V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~- 132 (264)
+++|+|++++ +|++| .|++|++||+.+ +..........|...|.+++|+|++ +++++|+.||+|++||+++++..
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~t-g~~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCC-CCEEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCceeEE
Confidence 4679999875 66655 699999999875 3333333345788899999999955 78999999999999999875310
Q ss_pred -----------------------------------------------------------eEEEeecCCCcEEEEEeccCC
Q psy9316 133 -----------------------------------------------------------IMLASGSFDKSVAIFALDKKG 153 (264)
Q Consensus 133 -----------------------------------------------------------~~~~~~~~d~~i~i~~~~~~~ 153 (264)
..+++++.|+.|.+|+++...
T Consensus 104 ~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 104 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp EEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred EecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence 136788889999999986543
Q ss_pred Ccc-ceEEEeccccceeeEEEcCCCCCEE--EEEeCCCcEEEEeCCCCccee-EeecCceEEEEEcCCCCEEEEee--CC
Q psy9316 154 DLN-KEVVYRGHTGSVDQLCWHATNPDLL--STASGDKTVRIWDARTQKSQI-IATKGENINITWAPNGNTIAVGN--KE 227 (264)
Q Consensus 154 ~~~-~~~~~~~h~~~i~~i~~~~~~~~~i--~s~~~dg~i~iwD~~t~~~~~-~~~~~~~~~v~~sp~g~~la~gs--~d 227 (264)
... .......|...|..+.++|.+..++ ++++.++.|++||.+...... ......+..+.|+|+++.+++++ .|
T Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d 263 (318)
T 4ggc_A 184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 263 (318)
T ss_dssp TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTT
T ss_pred ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCC
Confidence 221 2234456778899999999877765 466788999999999887533 33455678899999999887765 79
Q ss_pred CeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 228 DLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 228 ~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
+.|++||++++ +...+++||...|++|
T Consensus 264 ~~i~iwd~~~~----~~~~~l~gH~~~V~~l 290 (318)
T 4ggc_A 264 NQLVIWKYPTM----AKVAELKGHTSRVLSL 290 (318)
T ss_dssp CCEEEEETTTC----CEEEEECCCSSCEEEE
T ss_pred CEEEEEECCCC----cEEEEEcCCCCCEEEE
Confidence 99999998754 3445788999998886
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-22 Score=171.07 Aligned_cols=169 Identities=12% Similarity=0.122 Sum_probs=113.6
Q ss_pred CCCCeEEEEE--CCCcEEEEEeccCCCCcccEEEecccccEEeEEEec--CCCCeEEEEeCCCcEEEEECCCCCcceE--
Q psy9316 61 CDGRRLASGS--FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA--TNPDLLSTASGDKTVRIWDARTQKSQIM-- 134 (264)
Q Consensus 61 ~~g~~l~s~s--~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~-- 134 (264)
++++.+.+++ .|+.|++|++...+... ..+..|...+..++|++ .++.+|++++.|++|++||+++++....
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~--~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~ 220 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGK--ENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH 220 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEE--EEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCcee--eeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc
Confidence 3444444432 49999999986545432 23557888888888877 3457999999999999999998763211
Q ss_pred --------------------------------EEeecCCCcEEEEEeccCCCccceEE---EeccccceeeEEEcCCCCC
Q psy9316 135 --------------------------------LASGSFDKSVAIFALDKKGDLNKEVV---YRGHTGSVDQLCWHATNPD 179 (264)
Q Consensus 135 --------------------------------~~~~~~d~~i~i~~~~~~~~~~~~~~---~~~h~~~i~~i~~~~~~~~ 179 (264)
+++|+.|+++++|+....... .... ..+|...+....++ +.
T Consensus 221 g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l-~v~~~~~p~Gh~~~~lsg~~s---g~ 296 (356)
T 2w18_A 221 IDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV-GVMLYCLPPGQAGRFLEGDVK---DH 296 (356)
T ss_dssp CCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEE-EEEEECCCTTCCCCEEEEEEE---TT
T ss_pred CCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE-EEEEeeccCCCcceeEccccC---CC
Confidence 256778888999987533211 1111 12454443333332 45
Q ss_pred EEEEEeCCCcEEEEeCCCCcceeEe--ecCceE-EEEEcCCCCEEEEeeCCCeEEEEEc
Q psy9316 180 LLSTASGDKTVRIWDARTQKSQIIA--TKGENI-NITWAPNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 180 ~i~s~~~dg~i~iwD~~t~~~~~~~--~~~~~~-~v~~sp~g~~la~gs~d~~i~~~d~ 235 (264)
++++++.||+|+|||+.+++..... +...+. .++|||||++|++|+.|++|++||+
T Consensus 297 ~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 297 CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 7899999999999999999853332 333344 5899999999999999999999995
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-21 Score=170.42 Aligned_cols=165 Identities=14% Similarity=0.099 Sum_probs=129.9
Q ss_pred cCCCCEEEEEECCCCCeE-EEEECCCcEEEEEecc-CCCCcccEEEe--cccccEEeEEEecCCCCeEEEEeCCCcEEEE
Q psy9316 49 AHGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDK-KGDLNKEVVYR--GHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l-~s~s~dg~i~v~~~~~-~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vw 124 (264)
+|.+.|.+++|+|++++| ++++.||.|++|++.. .+... ..+. .|...|.+++|+|++ .+|++++.||.+++|
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL--KLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSI 176 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE--EEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee--eeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEE
Confidence 345579999999999996 8899999999999872 12222 2233 567889999999955 788899999999999
Q ss_pred ECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCC--CCCEEEEEeCCCcEEEEeCCCCccee
Q psy9316 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT--NPDLLSTASGDKTVRIWDARTQKSQI 202 (264)
Q Consensus 125 d~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~--~~~~i~s~~~dg~i~iwD~~t~~~~~ 202 (264)
|+.+.+.... ....+.+|...|.+++|+|+ ++.+|++++.|+.|++||++++....
T Consensus 177 ~~~~~~~~~~----------------------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 177 DINSIPEEKF----------------------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ETTSCCCSSC----------------------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred ecCCcccccc----------------------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 9976542210 01123568889999999986 25689999999999999999877533
Q ss_pred E---eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 203 I---ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 203 ~---~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
. .+...+.+++|+ ++++|++|+.|+.|++||+.++.
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~ 273 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK 273 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc
Confidence 2 345678999999 99999999999999999988654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.8e-23 Score=177.95 Aligned_cols=204 Identities=10% Similarity=0.071 Sum_probs=137.8
Q ss_pred ccccCCCCEEEEEECCCCCeEEEE-----------ECCCcEEEEEeccCCCCccc-EE-----EecccccEEeEEEecCC
Q psy9316 46 EYQAHGSKVHSVAWSCDGRRLASG-----------SFDKSVAIFALDKKGDLNKE-VV-----YRGHTGSVDQLCWHATN 108 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~~g~~l~s~-----------s~dg~i~v~~~~~~~~~~~~-~~-----~~~h~~~v~~i~~~~~~ 108 (264)
.+..|...|.+++++ ++.+++| +.|+.+++|+++........ .. ...+...+..++|+|++
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 356788888888765 5666665 35788999998753321110 00 11234558899999976
Q ss_pred CCeE-EEEeCCCcEEEEECCCCCcc------------------eEEEeecCCCcEEEEEeccCCCccceEEEecccccee
Q psy9316 109 PDLL-STASGDKTVRIWDARTQKSQ------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169 (264)
Q Consensus 109 ~~~l-~s~s~dg~i~vwd~~~~~~~------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~ 169 (264)
..++ ++++.|++|++||+++.+.. ..+++++ ++.+.+|+...... ........|...|.
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~-~~~~~~~~~~~~v~ 223 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSC-IARKTDFDKNWSLS 223 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCE-EEEECCCCTTEEEE
T ss_pred CEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcc-eeeeecCCCCCCEE
Confidence 4432 35557999999999876432 1355555 44556665433221 11223456888899
Q ss_pred eEEEcCCCCCEEEEEeCCC----cEEEEeCCCCccee------EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 170 QLCWHATNPDLLSTASGDK----TVRIWDARTQKSQI------IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 170 ~i~~~~~~~~~i~s~~~dg----~i~iwD~~t~~~~~------~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
+++|+|++ .++++++.|+ .+++||+....... ..+...+.+++|||+|++||+|+.|+.|++||+.++.
T Consensus 224 ~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 224 KINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS 302 (365)
T ss_dssp EEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred EEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence 99999854 6777888777 68889988765322 1223568899999999999999999999999987643
Q ss_pred CCCCCccc-Ccccceeeeee
Q psy9316 240 PPRERTLT-SRGHLMETRSL 258 (264)
Q Consensus 240 ~~~~~~~~-~~~h~~~~~~~ 258 (264)
.. .+ +.||...|++|
T Consensus 303 ~~----~~~~~gH~~~V~~v 318 (365)
T 4h5i_A 303 MS----KIFKQAHSFAITEV 318 (365)
T ss_dssp EE----EEETTSSSSCEEEE
T ss_pred EE----EEecCcccCCEEEE
Confidence 32 23 57899888876
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-21 Score=163.87 Aligned_cols=202 Identities=9% Similarity=0.043 Sum_probs=143.7
Q ss_pred EEEeecCceEEecccccc-----------ccccc-cCCCCEEEEEECC--CCCeEEEEECCCcEEEEEeccCCCCcccEE
Q psy9316 26 HLVCKIDDYVKHFNTHND-----------IKEYQ-AHGSKVHSVAWSC--DGRRLASGSFDKSVAIFALDKKGDLNKEVV 91 (264)
Q Consensus 26 ~~~~~~d~~~~~~~~~~~-----------~~~~~-~h~~~V~~l~~s~--~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~ 91 (264)
.++++.|+.++.|..... ++.+. +|.+.|.+++|+| +++++++++.||+|++||+.... . ...
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~--~~~ 164 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-Q--YIV 164 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-E--EEE
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-E--EEE
Confidence 467888999998854322 22332 6678999999999 99999999999999999987532 2 122
Q ss_pred E-ecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc---------------------eEEEeecCCCcEEEEEe
Q psy9316 92 Y-RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ---------------------IMLASGSFDKSVAIFAL 149 (264)
Q Consensus 92 ~-~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---------------------~~~~~~~~d~~i~i~~~ 149 (264)
. ..|...+.+++|+|++ .++++|+.||.|++||+++++.. ..+++++ ++.|++||+
T Consensus 165 ~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~ 242 (343)
T 3lrv_A 165 HSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDL 242 (343)
T ss_dssp ECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEET
T ss_pred EecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEc
Confidence 3 3456679999999954 78999999999999999875432 1466777 559999999
Q ss_pred ccCCCccceEEEecccccee--eEEEcCCCCCEEEEEeC-CCcEEEEeCCCCcceeEeecCceEEEEEcC---CCCEEEE
Q psy9316 150 DKKGDLNKEVVYRGHTGSVD--QLCWHATNPDLLSTASG-DKTVRIWDARTQKSQIIATKGENINITWAP---NGNTIAV 223 (264)
Q Consensus 150 ~~~~~~~~~~~~~~h~~~i~--~i~~~~~~~~~i~s~~~-dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp---~g~~la~ 223 (264)
+..........+..|...+. +++|+|+ +.+|++++. |+.+++|+++........ ..+..++|+| +++.+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~s~~d~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 243 RKDVGTLAYPTYTIPEFKTGTVTYDIDDS-GKNMIAYSNESNSLTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp TSSTTCBSSCCCBC-----CCEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCSEEE--EEEEECCC----CCCCEEEE
T ss_pred CCCCcceeecccccccccccceEEEECCC-CCEEEEecCCCCcEEEEEEcccccceEe--cCceeEecCccccccceeEE
Confidence 86544332222223444444 5999985 568888888 999999999765532222 4456778888 8999999
Q ss_pred eeCCCeEEEEEc
Q psy9316 224 GNKEDLVTFIDV 235 (264)
Q Consensus 224 gs~d~~i~~~d~ 235 (264)
++.|+.+.++--
T Consensus 320 ~~~d~~~~~~~~ 331 (343)
T 3lrv_A 320 VCGDGGIAAILK 331 (343)
T ss_dssp EEETTEEEEEEE
T ss_pred EecCCceEEEEe
Confidence 999999988853
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=176.59 Aligned_cols=194 Identities=12% Similarity=0.109 Sum_probs=131.7
Q ss_pred CCCCeEEEEECCCcEEEEEeccCCCCcc--cEEEecccccEEeEEEec-------CCCCeEEEEeCCCcEEEEECCCCCc
Q psy9316 61 CDGRRLASGSFDKSVAIFALDKKGDLNK--EVVYRGHTGSVDQLCWHA-------TNPDLLSTASGDKTVRIWDARTQKS 131 (264)
Q Consensus 61 ~~g~~l~s~s~dg~i~v~~~~~~~~~~~--~~~~~~h~~~v~~i~~~~-------~~~~~l~s~s~dg~i~vwd~~~~~~ 131 (264)
+++.+|++|+.|++|++|++........ ...+.+|.+.|.+++|+| .++++|+++|.|++|++||++++..
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~ 178 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP 178 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce
Confidence 4566899999999999999875322111 112568999999999987 2457999999999999999976431
Q ss_pred --------------------ceEEEeecCCCcEEEEEeccCCCccc----------------------eEEEecccccee
Q psy9316 132 --------------------QIMLASGSFDKSVAIFALDKKGDLNK----------------------EVVYRGHTGSVD 169 (264)
Q Consensus 132 --------------------~~~~~~~~~d~~i~i~~~~~~~~~~~----------------------~~~~~~h~~~i~ 169 (264)
...+++++.|+.|++||++....... .....+|...+.
T Consensus 179 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~ 258 (393)
T 4gq1_A 179 ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA 258 (393)
T ss_dssp EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence 12588999999999999865432110 011246778899
Q ss_pred eEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE--eecC------------------ceEEEEEcC--CCCEEEEeeCC
Q psy9316 170 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQII--ATKG------------------ENINITWAP--NGNTIAVGNKE 227 (264)
Q Consensus 170 ~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~--~~~~------------------~~~~v~~sp--~g~~la~gs~d 227 (264)
.+.|.+.++..|++++.|+.+++||+.+...... .+.. ......|+| ++.++++|+.|
T Consensus 259 ~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D 338 (393)
T 4gq1_A 259 NVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH 338 (393)
T ss_dssp EEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred eeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC
Confidence 9999866778999999999999999987542111 1111 112234444 44567888999
Q ss_pred CeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 228 DLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 228 ~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
+.|++||+..+.. ...+.+|...|++|
T Consensus 339 g~V~lwd~~~~~~----~~~~~~~~~~V~sv 365 (393)
T 4gq1_A 339 GLIQLINTYEKDS----NSIPIQLGMPIVDF 365 (393)
T ss_dssp TEEEEEETTCTTC----CEEEEECSSCEEEE
T ss_pred CEEEEEECCCCcE----EEEecCCCCcEEEE
Confidence 9999999876543 34566777777765
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-20 Score=163.65 Aligned_cols=215 Identities=13% Similarity=0.164 Sum_probs=161.3
Q ss_pred eEeecCCCeeEEEeecCceEEecccc--cccc-----ccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcc
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTH--NDIK-----EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK 88 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~-----~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~ 88 (264)
..+.| +..+.+++..++.++.|+.. +..+ .+.+|.+.|.+++|+|+++++++++.|+.|++|++.... .
T Consensus 128 ~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~---~ 203 (433)
T 3bws_A 128 VRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA---Y 203 (433)
T ss_dssp CEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC---E
T ss_pred EEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce---E
Confidence 36667 66666667778888888754 3333 456899999999999999999999999999999986422 2
Q ss_pred cEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc------------------eEEEeec--------CCC
Q psy9316 89 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ------------------IMLASGS--------FDK 142 (264)
Q Consensus 89 ~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------------------~~~~~~~--------~d~ 142 (264)
...+..|...+.+++|+|++..++++++.|+.|++||+++++.. ..+++++ .|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg 283 (433)
T 3bws_A 204 KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGG 283 (433)
T ss_dssp EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCE
T ss_pred EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCC
Confidence 23456788899999999977555566668999999999865321 1234444 477
Q ss_pred cEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-EeecCceEEEEEcCCCCEE
Q psy9316 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATKGENINITWAPNGNTI 221 (264)
Q Consensus 143 ~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~~~~~~v~~sp~g~~l 221 (264)
.|.+|+++... ......|...+..++|+|++..++++++.|+.|++||+++++... ......+.+++|+|+|++|
T Consensus 284 ~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 359 (433)
T 3bws_A 284 RLGIYSMDKEK----LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYL 359 (433)
T ss_dssp EEEEEETTTTE----EEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEE
T ss_pred eEEEEECCCCc----EEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEE
Confidence 88899876432 122234556788999999776678888999999999999876532 2344567899999999999
Q ss_pred EEeeC---------------CCeEEEEEcccC
Q psy9316 222 AVGNK---------------EDLVTFIDVVKS 238 (264)
Q Consensus 222 a~gs~---------------d~~i~~~d~~~~ 238 (264)
++++. ||.|++||+.++
T Consensus 360 ~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 360 YVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp EEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred EEEecCCCccccccccccccceEEEEEECCCC
Confidence 88887 469999998653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-20 Score=160.27 Aligned_cols=197 Identities=16% Similarity=0.247 Sum_probs=141.7
Q ss_pred ceEeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCC-----------------------------
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDG----------------------------- 63 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g----------------------------- 63 (264)
...+.+.++.+.++++.|+.+++|+. .+.+.++. |.+.|.++.|+++.
T Consensus 63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 141 (355)
T 3vu4_A 63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGG 141 (355)
T ss_dssp EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEE
T ss_pred EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCc
Confidence 34556666655567788889999975 34455554 66688888888653
Q ss_pred ------CeEEE--EECCCcEEEEEeccCCCC------------cc-cEEEecccccEEeEEEecCCCCeEEEEeCCCc-E
Q psy9316 64 ------RRLAS--GSFDKSVAIFALDKKGDL------------NK-EVVYRGHTGSVDQLCWHATNPDLLSTASGDKT-V 121 (264)
Q Consensus 64 ------~~l~s--~s~dg~i~v~~~~~~~~~------------~~-~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~-i 121 (264)
.+++. |+.||.|++||+...... .. ...+.+|...|.+++|+|+ +.+|++++.||+ |
T Consensus 142 ~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~-g~~l~s~s~d~~~v 220 (355)
T 3vu4_A 142 VCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK-SDMVATCSQDGTII 220 (355)
T ss_dssp EEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT-SSEEEEEETTCSEE
T ss_pred eEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC-CCEEEEEeCCCCEE
Confidence 23333 467788888887642200 01 3457899999999999995 479999999998 9
Q ss_pred EEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEe-c-cccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q psy9316 122 RIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYR-G-HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 199 (264)
Q Consensus 122 ~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~-~-h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~ 199 (264)
++||+++++... .+. + |...|.+++|+|+ +.+|++++.|++|++||++...
T Consensus 221 ~iwd~~~~~~~~--------------------------~~~~g~h~~~v~~~~~s~~-~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 221 RVFKTEDGVLVR--------------------------EFRRGLDRADVVDMKWSTD-GSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEETTTCCEEE--------------------------EEECTTCCSCEEEEEECTT-SCEEEEEETTCEEEEEESSCCS
T ss_pred EEEECCCCcEEE--------------------------EEEcCCCCCcEEEEEECCC-CCEEEEEECCCEEEEEEccCCC
Confidence 999998754321 233 4 8889999999985 5789999999999999997653
Q ss_pred cee-Ee---------------------ec---CceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 200 SQI-IA---------------------TK---GENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 200 ~~~-~~---------------------~~---~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
... .. .. .....++|+|+|++|++++.||.+++|++..+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 274 DNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp CCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred CcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 110 00 00 1125689999999999999999999999876544
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-19 Score=155.96 Aligned_cols=220 Identities=16% Similarity=0.143 Sum_probs=157.9
Q ss_pred ecCCCCCce-EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEE-CCCcEEEEEeccC
Q psy9316 8 FHTPKSPEY-KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGS-FDKSVAIFALDKK 83 (264)
Q Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~ 83 (264)
+..+..+.. .+.|.+..+.+++..|+.++.|+. .+.+..+..+. .+.+++|+|++++|+.++ .|+.|++||+...
T Consensus 28 ~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~ 106 (391)
T 1l0q_A 28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN 106 (391)
T ss_dssp EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC
Confidence 333444433 677777766567778999999975 34555565554 899999999999886655 6799999998642
Q ss_pred CCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-------------------eEEEeecCCCcE
Q psy9316 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-------------------IMLASGSFDKSV 144 (264)
Q Consensus 84 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------------~~~~~~~~d~~i 144 (264)
. ....+. +...+.+++|+|++..++++++.|+.|++||+++++.. .++++++.++.|
T Consensus 107 ~---~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v 182 (391)
T 1l0q_A 107 T---VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSI 182 (391)
T ss_dssp E---EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred e---EEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEE
Confidence 2 122233 34568999999977555578888999999999875421 234677888999
Q ss_pred EEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEe---CCCcEEEEeCCCCcceeE-eecCceEEEEEcCCCCE
Q psy9316 145 AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS---GDKTVRIWDARTQKSQII-ATKGENINITWAPNGNT 220 (264)
Q Consensus 145 ~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~---~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~ 220 (264)
.+|+++.... .....+...+..++|+|++. ++++++ .++.|++||+++++.... .....+.+++|+|+|++
T Consensus 183 ~~~d~~~~~~----~~~~~~~~~~~~~~~~~~g~-~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~ 257 (391)
T 1l0q_A 183 SVIDTVTNSV----IDTVKVEAAPSGIAVNPEGT-KAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKK 257 (391)
T ss_dssp EEEETTTTEE----EEEEECSSEEEEEEECTTSS-EEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSE
T ss_pred EEEECCCCeE----EEEEecCCCccceEECCCCC-EEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCE
Confidence 9999865321 12223556788999998654 555555 799999999998765322 23345778999999998
Q ss_pred E-EEeeCCCeEEEEEccc
Q psy9316 221 I-AVGNKEDLVTFIDVVK 237 (264)
Q Consensus 221 l-a~gs~d~~i~~~d~~~ 237 (264)
| ++++.|+.+++||+..
T Consensus 258 l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 258 VYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EEEEETTTTEEEEEETTT
T ss_pred EEEEcCCCCEEEEEECCC
Confidence 8 6668899999999875
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=171.30 Aligned_cols=199 Identities=15% Similarity=0.154 Sum_probs=146.9
Q ss_pred CceEeecCCCeeEEEeecCceEEeccccccccccccCCC-----CEEEEEECCCCCeEEEEECCCcEEEEEeccCCCC-c
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGS-----KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDL-N 87 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~h~~-----~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~-~ 87 (264)
...++.|.|. .+++++.|+.+++|+....+..+. |.. .|.+++|+|||++|++|+.||+|++|++... .. .
T Consensus 89 ~~vawSPdG~-~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~-~l~~ 165 (588)
T 2j04_A 89 RVCKPSPIDD-WMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN-SENT 165 (588)
T ss_dssp EEEEECSSSS-CEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC-TTTC
T ss_pred EEEEECCCCC-EEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC-cccc
Confidence 4447777775 456789999999998766777777 665 4999999999999999999999999998753 22 0
Q ss_pred ----ccEEE----ecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc---------------------eEEEee
Q psy9316 88 ----KEVVY----RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ---------------------IMLASG 138 (264)
Q Consensus 88 ----~~~~~----~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---------------------~~~~~~ 138 (264)
....+ .+|.+.|.+++|+|++ +++++.|+.+++||+..++.. ..++++
T Consensus 166 ~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa 242 (588)
T 2j04_A 166 PEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLT 242 (588)
T ss_dssp CCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEE
T ss_pred ccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEE
Confidence 12333 5678899999999955 778899999999999765421 134555
Q ss_pred cCCCcEEEEEeccCCCccceEEE-eccccceeeEEE--cCCCCCEEEEEeCCCcEEEEeCCCCc----------------
Q psy9316 139 SFDKSVAIFALDKKGDLNKEVVY-RGHTGSVDQLCW--HATNPDLLSTASGDKTVRIWDARTQK---------------- 199 (264)
Q Consensus 139 ~~d~~i~i~~~~~~~~~~~~~~~-~~h~~~i~~i~~--~~~~~~~i~s~~~dg~i~iwD~~t~~---------------- 199 (264)
+ ++.|++|++... ....+ .+|.+.|..+.| +|+ +..++++++||. ++|....-.
T Consensus 243 ~-~~tIkLWd~~~~----~~~~~~~gh~~~V~~va~~~s~d-~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~ 315 (588)
T 2j04_A 243 C-PGYVHKIDLKNY----SISSLKTGSLENFHIIPLNHEKE-STILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFK 315 (588)
T ss_dssp C-SSEEEEEETTTT----EEEEEECSCCSCCCEEEETTCSS-CEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHH
T ss_pred e-CCeEEEEECCCC----eEEEEEcCCCceEEEEEeeeCCC-CCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEE
Confidence 5 689999997532 12122 389999999999 774 467889999999 999863100
Q ss_pred --------ceeEeecCceEEEEEcCCCCEEEEee
Q psy9316 200 --------SQIIATKGENINITWAPNGNTIAVGN 225 (264)
Q Consensus 200 --------~~~~~~~~~~~~v~~sp~g~~la~gs 225 (264)
.........+.+++|||||+.+|+++
T Consensus 316 lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 316 KWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp HTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred EEECCCCceeeeccceEEEEEEECCCCCEEEEEE
Confidence 00000112367799999999999988
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-19 Score=156.81 Aligned_cols=205 Identities=12% Similarity=0.106 Sum_probs=151.5
Q ss_pred eEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeE-EEEECCCcEEEEEeccCCCCcccEEEecccccEEe
Q psy9316 25 FHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101 (264)
Q Consensus 25 ~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l-~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~ 101 (264)
+.++++.|+.++.|+.. +.+..+..|. .+.+++|+|++++| ++++.|+.|++||+... . ....+..+ ..+.+
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~-~--~~~~~~~~-~~v~~ 78 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN-N--VIATVPAG-SSPQG 78 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-E--EEEEEECS-SSEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCC-e--EEEEEECC-CCccc
Confidence 34567789999999753 4556666664 58999999999987 56668999999998642 2 22233333 38999
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCCccceEEEe
Q psy9316 102 LCWHATNPDLLSTASGDKTVRIWDARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYR 162 (264)
Q Consensus 102 i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~ 162 (264)
++|+|++..++++++.|+.|++||+++++.. .++++++.++.|.+|++..... ...+.
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~ 155 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV---INTVS 155 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE---EEEEE
T ss_pred eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE---EEEEe
Confidence 9999977555566667899999999875421 1346778899999999764321 12223
Q ss_pred ccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE-eecCceEEEEEcCCCCEEEEee---CCCeEEEEEcccC
Q psy9316 163 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII-ATKGENINITWAPNGNTIAVGN---KEDLVTFIDVVKS 238 (264)
Q Consensus 163 ~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~gs---~d~~i~~~d~~~~ 238 (264)
.+ ..+..++|+|++..++++++.++.|++||+++.+.... .....+.+++|+|+|++|++++ .++.|++||+..+
T Consensus 156 ~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 156 VG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred cC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 33 46789999997665667888999999999998875332 3345678899999999999888 6899999998754
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=161.81 Aligned_cols=158 Identities=13% Similarity=0.036 Sum_probs=114.5
Q ss_pred cCceEEeccc---cccccccccCCCCEEEEEECC---CCCeEEEEECCCcEEEEEeccCCCCcccEEEeccc---ccEEe
Q psy9316 31 IDDYVKHFNT---HNDIKEYQAHGSKVHSVAWSC---DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT---GSVDQ 101 (264)
Q Consensus 31 ~d~~~~~~~~---~~~~~~~~~h~~~V~~l~~s~---~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~---~~v~~ 101 (264)
.|+.|+.|.. +..+..+.+|...+..++|+| ++++|++|+.|++|++||+.+. .. ...+.+|. ..+.+
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~--l~tL~g~~~~v~~v~~ 231 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QL--LKKMHIDDSYQASVCH 231 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CE--EEEEECCC---CCCEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cE--EEEEcCCCcceeeeEE
Confidence 4888888765 344566778988899999998 7799999999999999998753 22 23455443 35677
Q ss_pred EEEecCCCCe-----------EEEEeCCCcEEEEECCCCCcc----------------------eEEEeecCCCcEEEEE
Q psy9316 102 LCWHATNPDL-----------LSTASGDKTVRIWDARTQKSQ----------------------IMLASGSFDKSVAIFA 148 (264)
Q Consensus 102 i~~~~~~~~~-----------l~s~s~dg~i~vwd~~~~~~~----------------------~~~~~~~~d~~i~i~~ 148 (264)
++|+|++..+ +++|+.|+++++||.++++.. ..+++++.|++|+|||
T Consensus 232 vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWD 311 (356)
T 2w18_A 232 KAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWD 311 (356)
T ss_dssp EEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred EEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEE
Confidence 7899865322 367889999999998876421 1367888999999999
Q ss_pred eccCCCccceEEEecccccee-eEEEcCCCCCEEEEEeCCCcEEEEeC
Q psy9316 149 LDKKGDLNKEVVYRGHTGSVD-QLCWHATNPDLLSTASGDKTVRIWDA 195 (264)
Q Consensus 149 ~~~~~~~~~~~~~~~h~~~i~-~i~~~~~~~~~i~s~~~dg~i~iwD~ 195 (264)
+...... .++.+|...+. .++|+|+ +.+|+||+.|++|+|||+
T Consensus 312 l~tGk~l---~tL~gH~~~vvs~vafSPD-G~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 312 LLLGQCT---ALLPPVSDQHWSFVKWSGT-DSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTTCSEE---EEECCC--CCCCEEEECSS-SSEEEEECTTSCEEEEEE
T ss_pred CCCCcEE---EEecCCCCCeEEEEEECCC-CCEEEEEECCCcEEEecC
Confidence 9764322 34667877655 5899995 578999999999999995
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-18 Score=150.61 Aligned_cols=217 Identities=13% Similarity=0.133 Sum_probs=151.8
Q ss_pred ceEEecccc-ccccccccCCCCEEEEEECCCCCeEEEEECCC---cEEEEEeccCCCCcccEEEecccccEEeEEEecCC
Q psy9316 33 DYVKHFNTH-NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDK---SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108 (264)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg---~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 108 (264)
+.+++|+.. ...+.+.+|.+.|.+++|+|||++|++++.|+ .|++||+.. +.. ..+..|...+.+++|+|++
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t-g~~---~~l~~~~~~~~~~~~spdg 234 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAV---RQVASFPRHNGAPAFSPDG 234 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE---EEEECCSSCEEEEEECTTS
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CcE---EEeecCCCcccCEEEcCCC
Confidence 678888653 45677888999999999999999999999885 999999864 222 2355678889999999977
Q ss_pred CCeEEEEeCCCc--EEEEECCCCCcc------------------eEEEeec-CCCcEEEEEeccCCCccceEEEeccccc
Q psy9316 109 PDLLSTASGDKT--VRIWDARTQKSQ------------------IMLASGS-FDKSVAIFALDKKGDLNKEVVYRGHTGS 167 (264)
Q Consensus 109 ~~~l~s~s~dg~--i~vwd~~~~~~~------------------~~~~~~~-~d~~i~i~~~~~~~~~~~~~~~~~h~~~ 167 (264)
..++++++.|+. |++||+++++.. ..++.++ .++...||.++..+.. ...+..+...
T Consensus 235 ~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~ 312 (415)
T 2hqs_A 235 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQ 312 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSE
T ss_pred CEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC--EEEEecCCCc
Confidence 545557777665 999999875421 1233333 3555455544332221 1223345567
Q ss_pred eeeEEEcCCCCCEEEEEeCC---CcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCC---eEEEEEcccCCCC
Q psy9316 168 VDQLCWHATNPDLLSTASGD---KTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKED---LVTFIDVVKSLPP 241 (264)
Q Consensus 168 i~~i~~~~~~~~~i~s~~~d---g~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~---~i~~~d~~~~~~~ 241 (264)
+..++|+|++ .+|++++.+ +.|++||+.+++.........+.+++|+|+|++|++++.++ .|++||+...
T Consensus 313 ~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--- 388 (415)
T 2hqs_A 313 NQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--- 388 (415)
T ss_dssp EEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC---
T ss_pred ccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC---
Confidence 8899999965 555555543 58999999988754333333678899999999999998887 8999997532
Q ss_pred CCCcccCcccceeeeee-ccc
Q psy9316 242 RERTLTSRGHLMETRSL-WGT 261 (264)
Q Consensus 242 ~~~~~~~~~h~~~~~~~-~~~ 261 (264)
+..++.+|..+++++ |+.
T Consensus 389 --~~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 389 --FKARLPATDGQVKFPAWSP 407 (415)
T ss_dssp --CEEECCCSSSEEEEEEECC
T ss_pred --cEEEeeCCCCCCcCCcccc
Confidence 223566787888764 543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-19 Score=158.94 Aligned_cols=162 Identities=17% Similarity=0.279 Sum_probs=122.2
Q ss_pred CCCCEEEEEECCCCCeEE----EEECCCcEEEEEeccC-----C---CCcccEEEecccccEEeEEEecCCCCeEEEEeC
Q psy9316 50 HGSKVHSVAWSCDGRRLA----SGSFDKSVAIFALDKK-----G---DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG 117 (264)
Q Consensus 50 h~~~V~~l~~s~~g~~l~----s~s~dg~i~v~~~~~~-----~---~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~ 117 (264)
|.+.|.+++|+|++++|+ +|+.|+.|++||+... . .......+.+|...|.+++|+|.++.++++++.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 556799999999999999 7889999999998653 1 111123355799999999999986789999999
Q ss_pred CCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q psy9316 118 DKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197 (264)
Q Consensus 118 dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t 197 (264)
||+|++||++++... ....+|...|.+++|+|+ +.+|++|+.||.|++||++.
T Consensus 171 Dg~v~iwD~~~~~~~--------------------------~~~~~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~~ 223 (434)
T 2oit_A 171 DGSIAVLQVTETVKV--------------------------CATLPSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPTL 223 (434)
T ss_dssp TSCEEEEEESSSEEE--------------------------EEEECGGGCEEEEEECTT-SSCEEEEETTSCEEEECTTC
T ss_pred CCeEEEEEcCCCcce--------------------------eeccCCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccCC
Confidence 999999999864211 112457789999999996 57888999999999999983
Q ss_pred CcceeE-eec-------CceEEEEEcCCCCEEEEe-eCCC------eEEEEEcccC
Q psy9316 198 QKSQII-ATK-------GENINITWAPNGNTIAVG-NKED------LVTFIDVVKS 238 (264)
Q Consensus 198 ~~~~~~-~~~-------~~~~~v~~sp~g~~la~g-s~d~------~i~~~d~~~~ 238 (264)
...... .+. ..+.+++|++++.++++. +.|| .+++||+++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 224 QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 222111 111 157789999998888554 3443 3899998864
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-17 Score=146.45 Aligned_cols=205 Identities=9% Similarity=0.079 Sum_probs=151.2
Q ss_pred CCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEeccccc
Q psy9316 22 GSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRGHTGS 98 (264)
Q Consensus 22 ~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~h~~~ 98 (264)
++.+.+++..|+.++.|+.. +.+..+..|...+.+++|+|++++++.++ .|+.|++||+... . ....+. +...
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~-~--~~~~~~-~~~~ 255 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK-L--EIRKTD-KIGL 255 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT-E--EEEECC-CCSE
T ss_pred CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC-c--EEEEec-CCCC
Confidence 34566778889999999753 45667778999999999999999886555 7999999998642 1 112233 3355
Q ss_pred EEeEEEecCCCCeEEEEe--------CCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEecc
Q psy9316 99 VDQLCWHATNPDLLSTAS--------GDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFALDK 151 (264)
Q Consensus 99 v~~i~~~~~~~~~l~s~s--------~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~ 151 (264)
+.+++|+|++ ..+++++ .||.|++||+++++. ..++++++.++.+.+|+++.
T Consensus 256 ~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 256 PRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp EEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred ceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence 8999999966 5666666 588999999987532 12456778899999999864
Q ss_pred CCCccceEEEeccccceeeEEEcCCCCCEEEEEeC---------------CCcEEEEeCCCCcceeE-eecCceEEEEEc
Q psy9316 152 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG---------------DKTVRIWDARTQKSQII-ATKGENINITWA 215 (264)
Q Consensus 152 ~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~---------------dg~i~iwD~~t~~~~~~-~~~~~~~~v~~s 215 (264)
... .....+...+..++|+|++ .++++++. ||.|++||+.+.+.... .....+.+++|+
T Consensus 335 ~~~----~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s 409 (433)
T 3bws_A 335 KKV----QKSIPVFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVS 409 (433)
T ss_dssp TEE----EEEEECSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred CcE----EEEecCCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEc
Confidence 221 1122356788999999865 45555555 57999999998775332 234567899999
Q ss_pred CCCCEEEEeeC-CCeEEEEEcc
Q psy9316 216 PNGNTIAVGNK-EDLVTFIDVV 236 (264)
Q Consensus 216 p~g~~la~gs~-d~~i~~~d~~ 236 (264)
|+|++|++++. |+.|++|++.
T Consensus 410 ~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 410 PDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp TTSCEEEEEETTTTEEEEEEET
T ss_pred CCCCEEEEEECCCCeEEEEEec
Confidence 99999988875 9999999975
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.7e-19 Score=157.02 Aligned_cols=182 Identities=17% Similarity=0.236 Sum_probs=128.2
Q ss_pred ceEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCC-------CcccE-----EEecccccEE
Q psy9316 33 DYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD-------LNKEV-----VYRGHTGSVD 100 (264)
Q Consensus 33 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~-------~~~~~-----~~~~h~~~v~ 100 (264)
+.++++..... .+...++.|++++++.+|++++.|+ +++|+...... ..... ..-.+...|.
T Consensus 23 ~~vri~~~~~~-----~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (434)
T 2oit_A 23 KKVRIFDSPEE-----LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH 96 (434)
T ss_dssp CEEECSCCCSS-----CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE
T ss_pred eeEEecCCccc-----cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCccc
Confidence 34566544322 2344678999999999999999988 88887542100 00000 1113556799
Q ss_pred eEEEecCCCCeEE----EEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCC
Q psy9316 101 QLCWHATNPDLLS----TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 176 (264)
Q Consensus 101 ~i~~~~~~~~~l~----s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~ 176 (264)
+++|+|++ ++|+ +++.|+.|++||+++.... ... ....+.....+.+|...|.+++|+|.
T Consensus 97 ~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~------~~~---------~~~~~~~~~~~~~h~~~V~~v~~~p~ 160 (434)
T 2oit_A 97 HLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNE------AKQ---------QKRPFAYHKLLKDAGGMVIDMKWNPT 160 (434)
T ss_dssp EEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCT------TCS---------SCCCSEEEECCCSGGGSEEEEEECSS
T ss_pred EEEEcCCC-CEEEEEEeccCCCceEEEEEccccccC------CcC---------CcceeeeeeccCCCCCceEEEEECCC
Confidence 99999965 5666 7888999999998653100 000 00001111234578899999999998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcceeE--eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 177 NPDLLSTASGDKTVRIWDARTQKSQII--ATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 177 ~~~~i~s~~~dg~i~iwD~~t~~~~~~--~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
++.+|++++.||+|++||++++..... .+...+.+++|+|+|++|++|+.|+.|++||++
T Consensus 161 ~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 161 VPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp CTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred CCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 778999999999999999998754222 234568999999999999999999999999987
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-15 Score=128.70 Aligned_cols=224 Identities=11% Similarity=0.129 Sum_probs=143.7
Q ss_pred ecCCCCCc-eEeecCCCeeEEEeecC-ceEEecccc----c--cccccccCCCCEEEEEECCCCCeEEEEEC-CCcEEEE
Q psy9316 8 FHTPKSPE-YKLLPSGSQFHLVCKID-DYVKHFNTH----N--DIKEYQAHGSKVHSVAWSCDGRRLASGSF-DKSVAIF 78 (264)
Q Consensus 8 ~~~~~~~~-~~~~~~~~~~~~~~~~d-~~~~~~~~~----~--~~~~~~~h~~~V~~l~~s~~g~~l~s~s~-dg~i~v~ 78 (264)
+..+..|. ..+.|.+..+ .++..+ +.++.|+.. + .+..+..+. .+..++|+|++++|++++. ++.|.+|
T Consensus 34 ~~~~~~~~~~~~spdg~~l-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~ 111 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYL-YVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVT 111 (343)
T ss_dssp EECSSCCCCEEECTTSSEE-EEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EecCCCCceEEECCCCCEE-EEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence 44444444 4677777654 444444 888887643 2 223444444 7899999999998887775 7889999
Q ss_pred EeccCCCC-cccEEEecccccEEeEEEecCCCCeEEEEe-CCCcEEEEECCC-CCcc-----------------------
Q psy9316 79 ALDKKGDL-NKEVVYRGHTGSVDQLCWHATNPDLLSTAS-GDKTVRIWDART-QKSQ----------------------- 132 (264)
Q Consensus 79 ~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s-~dg~i~vwd~~~-~~~~----------------------- 132 (264)
++. .+.. .....+. ....+.+++|+|++. .+++++ .++.|++||+++ ++..
T Consensus 112 d~~-~~~~~~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd 188 (343)
T 1ri6_A 112 RLE-DGLPVGVVDVVE-GLDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN 188 (343)
T ss_dssp EEE-TTEEEEEEEEEC-CCTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred ECC-CCcccccccccc-CCCCceEEEECCCCC-EEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCC
Confidence 985 2221 1111222 334588899999664 455555 899999999976 3210
Q ss_pred --eEEEeecCCCcEEEEEeccC-CCccceEEEe----cc--ccceeeEEEcCCCCCEEEEEeCCCcEEEEeCC--CCcce
Q psy9316 133 --IMLASGSFDKSVAIFALDKK-GDLNKEVVYR----GH--TGSVDQLCWHATNPDLLSTASGDKTVRIWDAR--TQKSQ 201 (264)
Q Consensus 133 --~~~~~~~~d~~i~i~~~~~~-~~~~~~~~~~----~h--~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~--t~~~~ 201 (264)
.+++++..++.+.+|+++.. +......... ++ ...+..++|+|++..++++...++.|.+||+. ++...
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~ 268 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 268 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence 12345557788999998642 2221111111 11 22455799999766566677789999999998 33322
Q ss_pred eE---eecCceEEEEEcCCCCEEEEee-CCCeEEEEEcc
Q psy9316 202 II---ATKGENINITWAPNGNTIAVGN-KEDLVTFIDVV 236 (264)
Q Consensus 202 ~~---~~~~~~~~v~~sp~g~~la~gs-~d~~i~~~d~~ 236 (264)
.. .....+..++|+|+|++|++++ .++.+.+|++.
T Consensus 269 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 269 KEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 11 1223467899999999988887 68999999664
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-15 Score=129.54 Aligned_cols=208 Identities=12% Similarity=0.167 Sum_probs=136.8
Q ss_pred EeecCceEEecccc--cc--ccccccCCCCEEEEEECCCCCeEEEEECC-CcEEEEEeccC-CCCcccEEEecccccEEe
Q psy9316 28 VCKIDDYVKHFNTH--ND--IKEYQAHGSKVHSVAWSCDGRRLASGSFD-KSVAIFALDKK-GDLNKEVVYRGHTGSVDQ 101 (264)
Q Consensus 28 ~~~~d~~~~~~~~~--~~--~~~~~~h~~~V~~l~~s~~g~~l~s~s~d-g~i~v~~~~~~-~~~~~~~~~~~h~~~v~~ 101 (264)
.+..++.++.|+.. .. ......|...+.+++|+|++++|++++.+ +.|.+|+++.. +.......+..+ ..+..
T Consensus 10 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~ 88 (343)
T 1ri6_A 10 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTH 88 (343)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSE
T ss_pred eCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcE
Confidence 34678888888652 11 11223577789999999999999998887 89999998732 222222223333 37788
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCCCC---c-------------------ceEEEeecCCCcEEEEEeccCCCccceE
Q psy9316 102 LCWHATNPDLLSTASGDKTVRIWDARTQK---S-------------------QIMLASGSFDKSVAIFALDKKGDLNKEV 159 (264)
Q Consensus 102 i~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~-------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~ 159 (264)
++|+|++..+++++..++.|.+||++.+. . ..++++...++.+.+|++...+......
T Consensus 89 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 168 (343)
T 1ri6_A 89 ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD 168 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred EEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeec
Confidence 99999764444444458999999993211 0 1133344478899999997644433221
Q ss_pred --EEec-cccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCC--Cccee-Ee-e--c------CceEEEEEcCCCCEEEEe
Q psy9316 160 --VYRG-HTGSVDQLCWHATNPDLLSTASGDKTVRIWDART--QKSQI-IA-T--K------GENINITWAPNGNTIAVG 224 (264)
Q Consensus 160 --~~~~-h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t--~~~~~-~~-~--~------~~~~~v~~sp~g~~la~g 224 (264)
.... ....+..++|+|++..+++++..++.|.+||+.. ++... .. . . ..+..++|+|+|++|+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~ 248 (343)
T 1ri6_A 169 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC 248 (343)
T ss_dssp EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE
T ss_pred ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEE
Confidence 2222 2346778999997655666666899999999954 33211 11 1 1 134479999999988754
Q ss_pred -eCCCeEEEEEcc
Q psy9316 225 -NKEDLVTFIDVV 236 (264)
Q Consensus 225 -s~d~~i~~~d~~ 236 (264)
..++.+.+||+.
T Consensus 249 ~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 249 DRTASLITVFSVS 261 (343)
T ss_dssp ETTTTEEEEEEEC
T ss_pred ecCCCEEEEEEEc
Confidence 479999999987
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-15 Score=128.45 Aligned_cols=218 Identities=12% Similarity=0.140 Sum_probs=141.9
Q ss_pred EeecCCCeeEEEeec--CceEEeccccc----cccccccCCCCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCccc
Q psy9316 17 KLLPSGSQFHLVCKI--DDYVKHFNTHN----DIKEYQAHGSKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKE 89 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~--d~~~~~~~~~~----~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~ 89 (264)
.+.|.+. +..+... ++.++.|+... .+..+..+...+..++|+|+|++|++++ .++.|.+|++...+.....
T Consensus 46 a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~ 124 (347)
T 3hfq_A 46 ALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLT 124 (347)
T ss_dssp EECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred EEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeec
Confidence 5566554 4333332 57787776532 3334445777889999999999999988 6789999999754443322
Q ss_pred EEEec---------ccccEEeEEEecCCCCeEEEEeCCCcEEEEECC-CCCcc-----------------------eEEE
Q psy9316 90 VVYRG---------HTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR-TQKSQ-----------------------IMLA 136 (264)
Q Consensus 90 ~~~~~---------h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~-----------------------~~~~ 136 (264)
..+.. +...+.+++|+|++. ++++...++.|++||++ .++.. .+++
T Consensus 125 ~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v 203 (347)
T 3hfq_A 125 DTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFL 203 (347)
T ss_dssp EEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred ceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEE
Confidence 22211 122477899999775 77777778999999997 32210 1344
Q ss_pred eecCCCcEEEEEeccC-CCccceEEEeccc------cceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCC-ccee-Eee--
Q psy9316 137 SGSFDKSVAIFALDKK-GDLNKEVVYRGHT------GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ-KSQI-IAT-- 205 (264)
Q Consensus 137 ~~~~d~~i~i~~~~~~-~~~~~~~~~~~h~------~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~-~~~~-~~~-- 205 (264)
+...++.+.+|+++.. +............ ..+..++|+|++..++++...++.|.+||+... .... ...
T Consensus 204 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~ 283 (347)
T 3hfq_A 204 AGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST 283 (347)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC
T ss_pred EeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec
Confidence 4556777888887642 2222111222221 347789999976556677788999999999732 2211 111
Q ss_pred -cCceEEEEEcCCCCEEEEeeCC-CeEEEEEcc
Q psy9316 206 -KGENINITWAPNGNTIAVGNKE-DLVTFIDVV 236 (264)
Q Consensus 206 -~~~~~~v~~sp~g~~la~gs~d-~~i~~~d~~ 236 (264)
...+..++|+|+|++|++++.+ +.+.+|++.
T Consensus 284 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 284 EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp SSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 2246789999999999888754 899999654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-15 Score=125.18 Aligned_cols=215 Identities=12% Similarity=0.044 Sum_probs=145.7
Q ss_pred cCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEEC-CCcEEEEEeccCCCCcccEEEeccc
Q psy9316 20 PSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSF-DKSVAIFALDKKGDLNKEVVYRGHT 96 (264)
Q Consensus 20 ~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~-dg~i~v~~~~~~~~~~~~~~~~~h~ 96 (264)
+.+..+.+++..++.++.|+. .+....+..+...+ +++|+|+|++|++++. ++.|.+||..... . ....+..+.
T Consensus 7 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-~-~~~~~~~~~ 83 (331)
T 3u4y_A 7 TTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP-P-KVVAIQEGQ 83 (331)
T ss_dssp CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS-C-EEEEEEECS
T ss_pred CCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc-e-eEEecccCC
Confidence 344455566778899999865 34445555566667 9999999998887776 8899999986532 2 123344455
Q ss_pred ccEEeEEEecCCCCeEEEEeCCC---cEEEEECCCCCcc-------------------eEEEeecCCCc-EEEEEeccCC
Q psy9316 97 GSVDQLCWHATNPDLLSTASGDK---TVRIWDARTQKSQ-------------------IMLASGSFDKS-VAIFALDKKG 153 (264)
Q Consensus 97 ~~v~~i~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~-------------------~~~~~~~~d~~-i~i~~~~~~~ 153 (264)
....+++|+|++ ++++++..++ .|.+||+++++.. .++++...++. +.+|+++..+
T Consensus 84 ~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 84 SSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG 162 (331)
T ss_dssp SCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred CCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence 555558999966 5565555553 8999999875421 13455556677 9999987655
Q ss_pred Cccce-EEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc---eeEe-ecCceEEEEEcCCCCEEEEee-CC
Q psy9316 154 DLNKE-VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---QIIA-TKGENINITWAPNGNTIAVGN-KE 227 (264)
Q Consensus 154 ~~~~~-~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~---~~~~-~~~~~~~v~~sp~g~~la~gs-~d 227 (264)
..... ............++|+|++..+++++..++.|.+||+.+++. .... ....+..++|+|+|++|++++ .+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 242 (331)
T 3u4y_A 163 VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTEST 242 (331)
T ss_dssp CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSE
T ss_pred cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCC
Confidence 43221 111123345788999997655677777899999999998765 2222 234567899999999776654 57
Q ss_pred CeEEEEEcccC
Q psy9316 228 DLVTFIDVVKS 238 (264)
Q Consensus 228 ~~i~~~d~~~~ 238 (264)
+.|.+||+.++
T Consensus 243 ~~i~~~d~~~~ 253 (331)
T 3u4y_A 243 VDVFNFNQLSG 253 (331)
T ss_dssp EEEEEEETTTT
T ss_pred CEEEEEECCCC
Confidence 88999998754
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-15 Score=125.67 Aligned_cols=203 Identities=15% Similarity=0.163 Sum_probs=138.0
Q ss_pred ecCceEEeccccc-cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecc-cccEEeEEEecC
Q psy9316 30 KIDDYVKHFNTHN-DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH-TGSVDQLCWHAT 107 (264)
Q Consensus 30 ~~d~~~~~~~~~~-~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~ 107 (264)
+.|+.+++|+... ....+..|.+.|.+++|+|+|++|++++ ++.|.+|++...+... .....+ ...+.+++|+|+
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE--KVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE--ECCCTTCCCBCSCCEECTT
T ss_pred CcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce--EeccccccccccceEECCC
Confidence 4577888887543 3445667889999999999999999986 7899999986512221 223344 367889999996
Q ss_pred CCCeEEEEe--CCCcEEEE--ECCCCCc------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccc
Q psy9316 108 NPDLLSTAS--GDKTVRIW--DARTQKS------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165 (264)
Q Consensus 108 ~~~~l~s~s--~dg~i~vw--d~~~~~~------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~ 165 (264)
+ .++++++ .++..++| |+.+++. ..++.++..++.+.+|+++..+.. ...+..+.
T Consensus 96 g-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~ 172 (297)
T 2ojh_A 96 G-ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV--ETRLTHGE 172 (297)
T ss_dssp S-SEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC--EEECCCSS
T ss_pred C-CEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc--ceEcccCC
Confidence 5 5677777 33455555 4443321 113346677888899987654322 23345667
Q ss_pred cceeeEEEcCCCCCEEEEEeCCCcEEEEeCCC-CcceeE--eecCceEEEEEcCCCCEEEEeeCC-----------CeEE
Q psy9316 166 GSVDQLCWHATNPDLLSTASGDKTVRIWDART-QKSQII--ATKGENINITWAPNGNTIAVGNKE-----------DLVT 231 (264)
Q Consensus 166 ~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t-~~~~~~--~~~~~~~~v~~sp~g~~la~gs~d-----------~~i~ 231 (264)
..+..+.|+|++..+++++..++.+++|++.. ...... .....+..++|+|+|++|++++.+ ..|+
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~ 252 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ 252 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence 78999999997654554555699999998763 222212 223346679999999999998876 5699
Q ss_pred EEEcccC
Q psy9316 232 FIDVVKS 238 (264)
Q Consensus 232 ~~d~~~~ 238 (264)
+||+..+
T Consensus 253 ~~d~~~~ 259 (297)
T 2ojh_A 253 LMDMDGG 259 (297)
T ss_dssp EEETTSC
T ss_pred EEecCCC
Confidence 9998754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-14 Score=131.50 Aligned_cols=207 Identities=13% Similarity=0.149 Sum_probs=140.4
Q ss_pred eeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEe
Q psy9316 24 QFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101 (264)
Q Consensus 24 ~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~ 101 (264)
.+.++.+.|+.+..|+. .+.+.++..+.. +..++|+|||++|++++.|+.|.+||+.. ........+. +...+..
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~-~t~~~~~~i~-~g~~p~~ 226 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWA-KEPTKVAEIK-IGIEARS 226 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTS-SSCEEEEEEE-CCSEEEE
T ss_pred EEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcC-CCCcEEEEEe-cCCCcce
Confidence 55566778899998865 455667763333 89999999999999999999999999831 1112222333 3456789
Q ss_pred EEEec----CCCCeEEEEe-CCCcEEEEECCCCCcce-------------------------------EEEeecCCCcEE
Q psy9316 102 LCWHA----TNPDLLSTAS-GDKTVRIWDARTQKSQI-------------------------------MLASGSFDKSVA 145 (264)
Q Consensus 102 i~~~~----~~~~~l~s~s-~dg~i~vwd~~~~~~~~-------------------------------~~~~~~~d~~i~ 145 (264)
++|+| ++ +++++++ .++.|.+||..+.+... .+++...++.|.
T Consensus 227 va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~ 305 (543)
T 1nir_A 227 VESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL 305 (543)
T ss_dssp EEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred EEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEE
Confidence 99998 66 5666666 58999999987654211 233444567788
Q ss_pred EEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee------cCceEEEEEcCC-C
Q psy9316 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT------KGENINITWAPN-G 218 (264)
Q Consensus 146 i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~------~~~~~~v~~sp~-g 218 (264)
+|+........ . ....+...+..+.|+|++..+++++..+++|.+||..+++...... .+...++ ++|+ |
T Consensus 306 vvd~~~~~~l~-~-~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g 382 (543)
T 1nir_A 306 LVNYKDIDNLT-V-TSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYG 382 (543)
T ss_dssp EEECTTSSSCE-E-EEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTE
T ss_pred EEEecCCCcce-e-EEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCc
Confidence 88875433322 1 1123445677899999766566666779999999999987533222 1122233 4677 6
Q ss_pred CEEEEee-CCCeEEEEEccc
Q psy9316 219 NTIAVGN-KEDLVTFIDVVK 237 (264)
Q Consensus 219 ~~la~gs-~d~~i~~~d~~~ 237 (264)
..+++++ .|+.|.+||+..
T Consensus 383 ~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 383 PVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EEEEEEBSSSSEEEEEECCT
T ss_pred cEEEeccCCCceEEEEEeCC
Confidence 6777775 689999999876
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-15 Score=133.23 Aligned_cols=209 Identities=11% Similarity=0.091 Sum_probs=143.4
Q ss_pred cCCCeeEEEeec----Cc----eEEeccc--c--ccc--cccccCCCCEEEEEECC--------------CCCeEEEEEC
Q psy9316 20 PSGSQFHLVCKI----DD----YVKHFNT--H--NDI--KEYQAHGSKVHSVAWSC--------------DGRRLASGSF 71 (264)
Q Consensus 20 ~~~~~~~~~~~~----d~----~~~~~~~--~--~~~--~~~~~h~~~V~~l~~s~--------------~g~~l~s~s~ 71 (264)
+.+..+.+++++ +| .+++|+. . +.+ +.+.+|...+..+++++ .+.+|+.++.
T Consensus 72 ~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~ 151 (415)
T 2hqs_A 72 ALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQ 151 (415)
T ss_dssp TTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEE
T ss_pred hcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEe
Confidence 445555555553 46 7888876 4 333 45778888777777664 2667777665
Q ss_pred C------CcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCC---cEEEEECCCCCcce---------
Q psy9316 72 D------KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK---TVRIWDARTQKSQI--------- 133 (264)
Q Consensus 72 d------g~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~--------- 133 (264)
+ +.|++||++. +. ...+..|...+.+++|+|++ +.+++++.|+ .|++||+++++...
T Consensus 152 ~~~~~~~~~i~i~d~~g-~~---~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~ 226 (415)
T 2hqs_A 152 TNGGQFPYELRVSDYDG-YN---QFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG 226 (415)
T ss_dssp CSSSSCCEEEEEEETTS-CS---CEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE
T ss_pred cCCCCccceEEEEcCCC-CC---CEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCcEEEeecCCCccc
Confidence 4 7999999863 22 23466788999999999965 6777888775 99999998764321
Q ss_pred ----------EEEeecCCCc--EEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeC-CC--cEEEEeCCCC
Q psy9316 134 ----------MLASGSFDKS--VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG-DK--TVRIWDARTQ 198 (264)
Q Consensus 134 ----------~~~~~~~d~~--i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~-dg--~i~iwD~~t~ 198 (264)
++.+++.++. |.+|++.... ...+..|...+..+.|+|++ ..|+.++. ++ .|++||+.++
T Consensus 227 ~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~ 301 (415)
T 2hqs_A 227 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGG 301 (415)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTTCC----EEECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSS
T ss_pred CEEEcCCCCEEEEEEecCCCceEEEEECCCCC----EEeCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCC
Confidence 2225555554 6666654321 23456677889999999965 55555554 45 6777799887
Q ss_pred cceeE-eecCceEEEEEcCCCCEEEEeeCC---CeEEEEEcccC
Q psy9316 199 KSQII-ATKGENINITWAPNGNTIAVGNKE---DLVTFIDVVKS 238 (264)
Q Consensus 199 ~~~~~-~~~~~~~~v~~sp~g~~la~gs~d---~~i~~~d~~~~ 238 (264)
+.... .....+.+++|+|+|++|++++.+ ..|++||+..+
T Consensus 302 ~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 302 APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred CEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 64332 233457789999999999998875 58999998754
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-14 Score=120.98 Aligned_cols=212 Identities=11% Similarity=0.067 Sum_probs=140.4
Q ss_pred ceEeecCCCeeEEEeecCceEEecccc--cccccccc-C----CCCEEEEEECCCCCeEEEEE------------CCCcE
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQA-H----GSKVHSVAWSCDGRRLASGS------------FDKSV 75 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~-h----~~~V~~l~~s~~g~~l~s~s------------~dg~i 75 (264)
...+.|.+..+.+++..++.+..|+.. +.+..+.. + ...+.+++|+|+|++|++++ .++.|
T Consensus 38 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i 117 (337)
T 1pby_B 38 VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV 117 (337)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceE
Confidence 346777776666666777888888653 33333432 2 22577899999999999886 57999
Q ss_pred EEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEE-------------------
Q psy9316 76 AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLA------------------- 136 (264)
Q Consensus 76 ~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~------------------- 136 (264)
.+|++... .. ...+. ....+..++|+|++. +++++ ++.+++||+++++....+.
T Consensus 118 ~v~d~~~~-~~--~~~~~-~~~~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 118 ALYDAETL-SR--RKAFE-APRQITMLAWARDGS-KLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN 190 (337)
T ss_dssp EEEETTTT-EE--EEEEE-CCSSCCCEEECTTSS-CEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCC
T ss_pred EEEECCCC-cE--EEEEe-CCCCcceeEECCCCC-EEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEee
Confidence 99998542 11 12222 234577889999764 45444 6899999998764322111
Q ss_pred eecCCC-----------------------cEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEE
Q psy9316 137 SGSFDK-----------------------SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193 (264)
Q Consensus 137 ~~~~d~-----------------------~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iw 193 (264)
++..++ .+.+|+..... .. ...+..+...+..++|+|++ .+++++ ++.|.+|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~-~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~ 265 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE-MA-MREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESF 265 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC-EE-EEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEE
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCC-ce-EeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEE
Confidence 111111 24566654322 11 22344555667889999865 455555 7999999
Q ss_pred eCCCCcceeE-eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 194 DARTQKSQII-ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 194 D~~t~~~~~~-~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
|+.+++.... .....+.+++|+|+|++|++++.++.|.+||+.++
T Consensus 266 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 266 DLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp ETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred ECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 9998765332 23445778999999999999999999999998754
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-14 Score=119.76 Aligned_cols=219 Identities=6% Similarity=0.039 Sum_probs=143.9
Q ss_pred CceEeecCCCeeEEEeecCceEEecccc--cc-ccccccCCCCEEEEEECCCCCeEEEEECCC---cEEEEEeccCCCCc
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTH--ND-IKEYQAHGSKVHSVAWSCDGRRLASGSFDK---SVAIFALDKKGDLN 87 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~-~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg---~i~v~~~~~~~~~~ 87 (264)
|...+.|.+..+...+..++.+..|+.. +. ...+..+..+..+++|+|+|++|+++..++ .|.+|++.... .
T Consensus 43 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~-~- 120 (331)
T 3u4y_A 43 VDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK-F- 120 (331)
T ss_dssp EEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE-E-
T ss_pred ceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC-e-
Confidence 3446667776555555557888888653 33 455556666666699999999999554442 89999986422 1
Q ss_pred ccEEEecccccEEeEEEecCCCCeEEEEeCCCc-EEEEECCCCCc------------------------ceEEEeecCCC
Q psy9316 88 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT-VRIWDARTQKS------------------------QIMLASGSFDK 142 (264)
Q Consensus 88 ~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~-i~vwd~~~~~~------------------------~~~~~~~~~d~ 142 (264)
...+. ......+++|+|++..++++...++. +.+|+++.... ..+++++..++
T Consensus 121 -~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 198 (331)
T 3u4y_A 121 -ISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGN 198 (331)
T ss_dssp -EEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTT
T ss_pred -EEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCC
Confidence 12233 23456899999977666777677788 99999764211 11345556678
Q ss_pred cEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--e------cC---ceEE
Q psy9316 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--T------KG---ENIN 211 (264)
Q Consensus 143 ~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~------~~---~~~~ 211 (264)
.|.+|++...........+. ....+..++|+|++..++++...++.|.+||+.+++..... . .. ....
T Consensus 199 ~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (331)
T 3u4y_A 199 SIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQ 277 (331)
T ss_dssp EEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCC
T ss_pred eEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccc
Confidence 89999986543311122222 23567789999976556666667889999999987642111 1 11 1234
Q ss_pred EEEcCCCCEEEEeeC-CCeEEEEEccc
Q psy9316 212 ITWAPNGNTIAVGNK-EDLVTFIDVVK 237 (264)
Q Consensus 212 v~~sp~g~~la~gs~-d~~i~~~d~~~ 237 (264)
++|+|+|++|++++. ++.+.+||+..
T Consensus 278 ~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 278 MALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred eEECCCCCEEEEecCCCCcEEEEEecC
Confidence 899999999866654 56999999875
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-14 Score=118.60 Aligned_cols=207 Identities=14% Similarity=0.091 Sum_probs=137.2
Q ss_pred CceEeecCCCeeEEEeecCceEEeccccc---cccccccC-CCCEEEEEECCCCCeEEEEE--CCCcEEEEEeccCCCCc
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTHN---DIKEYQAH-GSKVHSVAWSCDGRRLASGS--FDKSVAIFALDKKGDLN 87 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~~h-~~~V~~l~~s~~g~~l~s~s--~dg~i~v~~~~~~~~~~ 87 (264)
....+.|.+..+ +++ .++.++.|+... ....+..| ...|.+++|+|++++|++++ .++...+|.++..+..
T Consensus 45 ~~~~~spdg~~l-~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~- 121 (297)
T 2ojh_A 45 EAPNWSPDGKYL-LLN-SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT- 121 (297)
T ss_dssp EEEEECTTSSEE-EEE-ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-
T ss_pred EeeEECCCCCEE-EEE-cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-
Confidence 344677777643 333 478888886543 33444455 46789999999999999998 4467777777543322
Q ss_pred ccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECC--CCCc-------------------ceEEEeecCCCcEEE
Q psy9316 88 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR--TQKS-------------------QIMLASGSFDKSVAI 146 (264)
Q Consensus 88 ~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~--~~~~-------------------~~~~~~~~~d~~i~i 146 (264)
...+.. ...+..++|+|++..++++++.|+.+++|+++ +++. ..+++++..++.+.+
T Consensus 122 -~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i 199 (297)
T 2ojh_A 122 -PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQI 199 (297)
T ss_dssp -CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred -eEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccE
Confidence 122322 33488899999775555588889999999853 2221 012334445788899
Q ss_pred EEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCC-----------CcEEEEeCCCCcceeE----eecCceEE
Q psy9316 147 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-----------KTVRIWDARTQKSQII----ATKGENIN 211 (264)
Q Consensus 147 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~d-----------g~i~iwD~~t~~~~~~----~~~~~~~~ 211 (264)
|.++..+.. ...+..|...+..+.|+|++ .+|+.++.+ +.|++||+.+++.... .+...+..
T Consensus 200 ~~~~~~~~~--~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 276 (297)
T 2ojh_A 200 WRVRVDGSS--VERITDSAYGDWFPHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNS 276 (297)
T ss_dssp EEEETTSSC--EEECCCCSEEEEEEEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCS
T ss_pred EEECCCCCC--cEEEecCCcccCCeEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCccccc
Confidence 988743322 23345666788899999865 555555554 5699999998764322 22345778
Q ss_pred EEEcCCCCEEEEeeCCC
Q psy9316 212 ITWAPNGNTIAVGNKED 228 (264)
Q Consensus 212 v~~sp~g~~la~gs~d~ 228 (264)
++|+|+|++|++++.+.
T Consensus 277 ~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 277 PNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CCBCTTSSEEEEEEECC
T ss_pred ceECCCCCEEEEEEecc
Confidence 99999999999888664
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-13 Score=116.13 Aligned_cols=198 Identities=11% Similarity=0.047 Sum_probs=135.4
Q ss_pred ceEeecCCCeeEEEeecCceEEecccc--ccccccccCCCC---------EEEEEECCCCCeEEEEE--CCCcEEEEEec
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSK---------VHSVAWSCDGRRLASGS--FDKSVAIFALD 81 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~---------V~~l~~s~~g~~l~s~s--~dg~i~v~~~~ 81 (264)
...+.|.+..+.+....++.+..|+.. +.+..+..+... +.++.|+|++++++.++ .++.|.+||..
T Consensus 93 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 93 GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp SEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT
T ss_pred eEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC
Confidence 336667776655566667888888653 444555544322 78899999999888876 47889999975
Q ss_pred cCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEE
Q psy9316 82 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161 (264)
Q Consensus 82 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~ 161 (264)
.. .....+..+...+..+.|+|++ +.+++++.++.+.+||+.+++....+..+ .
T Consensus 173 ~~---~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~----------------------~ 226 (353)
T 3vgz_A 173 NI---KLKTAIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKILSRKKLL----------------------D 226 (353)
T ss_dssp TT---EEEEEECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEEEEEECC----------------------C
T ss_pred CC---ceEEEecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEEEEEEcC----------------------C
Confidence 42 1222233345557888999866 56777788999999999876532211110 0
Q ss_pred eccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEee-CCCeEEEEEcccC
Q psy9316 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGN-KEDLVTFIDVVKS 238 (264)
Q Consensus 162 ~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs-~d~~i~~~d~~~~ 238 (264)
.++...+..++|+|++..++++...++.|.+||+.+++............++|+|+|++++++. .++.|.+||+.++
T Consensus 227 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 227 DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 1233456778999976656666666799999999988754333333446799999999766555 6999999998653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8e-14 Score=127.58 Aligned_cols=218 Identities=17% Similarity=0.234 Sum_probs=149.3
Q ss_pred EeecCCCeeEEEeecCceEEeccc--c--ccccccccCCCCEEEEEECC----CCCeEEEEEC-CCcEEEEEeccCCCCc
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--H--NDIKEYQAHGSKVHSVAWSC----DGRRLASGSF-DKSVAIFALDKKGDLN 87 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~--~~~~~~~~h~~~V~~l~~s~----~g~~l~s~s~-dg~i~v~~~~~~~~~~ 87 (264)
.+.|.+. ++.+++.|+.++.|+. . +.+.++. +...+..++|+| ||++|++++. +++|.+||..... .
T Consensus 185 ~~spdg~-~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-~- 260 (543)
T 1nir_A 185 RMSASGR-YLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-P- 260 (543)
T ss_dssp EECTTSC-EEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-E-
T ss_pred EECCCCC-EEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-c-
Confidence 4556554 5567788899999877 3 3445554 455689999999 9999999884 8999999976422 1
Q ss_pred ccEEEec----------ccc-cEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc---------------------ceEE
Q psy9316 88 KEVVYRG----------HTG-SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---------------------QIML 135 (264)
Q Consensus 88 ~~~~~~~----------h~~-~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---------------------~~~~ 135 (264)
...+.. |.. .+..+.+++++..++++...++.|.+||+.+.+. ..++
T Consensus 261 -~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 261 -KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp -EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEE
T ss_pred -ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEE
Confidence 122222 223 6888999998878888888999999999875321 1134
Q ss_pred EeecCCCcEEEEEeccCCCccceEEE--eccccceeeEEEcCCCCCEEEEEe-CCCcEEEEeCCC-------Ccc-eeEe
Q psy9316 136 ASGSFDKSVAIFALDKKGDLNKEVVY--RGHTGSVDQLCWHATNPDLLSTAS-GDKTVRIWDART-------QKS-QIIA 204 (264)
Q Consensus 136 ~~~~~d~~i~i~~~~~~~~~~~~~~~--~~h~~~i~~i~~~~~~~~~i~s~~-~dg~i~iwD~~t-------~~~-~~~~ 204 (264)
+++..++.|.+||..... +...... ..|......+ ++|+++.+++++. .|++|.+||+.+ .+. ....
T Consensus 340 va~~~~~~v~v~D~~tg~-l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~ 417 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDRR-LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ 417 (543)
T ss_dssp EEEGGGTEEEEEETTTTE-EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred EEecCCCeEEEEECCCCe-EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence 566678899999976532 2111111 1254433333 4576567788876 689999999987 333 2222
Q ss_pred -ecCceEEEEEcCCCCEEEEee-------CCCeEEEEEcccCCCC
Q psy9316 205 -TKGENINITWAPNGNTIAVGN-------KEDLVTFIDVVKSLPP 241 (264)
Q Consensus 205 -~~~~~~~v~~sp~g~~la~gs-------~d~~i~~~d~~~~~~~ 241 (264)
+.+.+..++++|+|++|.+++ .++.|.+||+.+....
T Consensus 418 ~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 418 GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 223467899999999999998 3779999999875544
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-13 Score=116.20 Aligned_cols=215 Identities=10% Similarity=0.075 Sum_probs=133.6
Q ss_pred eEeecCCCeeEEEeecCceEEecccc--ccccccccCC------CCEEEEEECCCCCeEEEEECC------------CcE
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHG------SKVHSVAWSCDGRRLASGSFD------------KSV 75 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~------~~V~~l~~s~~g~~l~s~s~d------------g~i 75 (264)
..+.|.+..+.++...++.+..|+.. +.+..+..+. ..+.+++|+|+|++|++++.+ +.|
T Consensus 48 ~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i 127 (349)
T 1jmx_B 48 AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRL 127 (349)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred eEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeE
Confidence 36677776555566678888888753 3343443222 237889999999999998865 899
Q ss_pred EEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCC-------------
Q psy9316 76 AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDK------------- 142 (264)
Q Consensus 76 ~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~------------- 142 (264)
.+||+...........+. +...+.+++|+|++. +++ ++ +.|++||+++++....+..+..+.
T Consensus 128 ~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (349)
T 1jmx_B 128 EVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP 202 (349)
T ss_dssp EEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCC
T ss_pred EEEECCCccccceeeecc-CCCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeec
Confidence 999987532222222233 334588899999764 444 44 349999998765433222221000
Q ss_pred -----c-------E-----------------EEEEeccCCCccceEEEeccccceeeEEEcC-CCCCEEEEEeCCCcEEE
Q psy9316 143 -----S-------V-----------------AIFALDKKGDLNKEVVYRGHTGSVDQLCWHA-TNPDLLSTASGDKTVRI 192 (264)
Q Consensus 143 -----~-------i-----------------~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~-~~~~~i~s~~~dg~i~i 192 (264)
. + .++..+..........+..+...+..++|+| ++ .+++++ ++.|.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~ 279 (349)
T 1jmx_B 203 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAK 279 (349)
T ss_dssp CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEE
T ss_pred CCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEE
Confidence 0 0 0000111111111111222334677889998 54 555555 889999
Q ss_pred EeCCCCcceeE-eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 193 WDARTQKSQII-ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 193 wD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
||+++++.... .....+..++|+|+|++|++++.++.|.+||+.++
T Consensus 280 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 280 YDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 99998875332 23445678999999999988888999999998653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-13 Score=126.00 Aligned_cols=218 Identities=15% Similarity=0.140 Sum_probs=140.5
Q ss_pred ceEeecCCCeeEEEeecCceEEeccccc-------cccccccCCCC--------------EEEEEECCCCCeEEEEE---
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTHN-------DIKEYQAHGSK--------------VHSVAWSCDGRRLASGS--- 70 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~-------~~~~~~~h~~~--------------V~~l~~s~~g~~l~s~s--- 70 (264)
...+.|.|..+. + ..++.+++|+... ..+....+... +.++.|+|||++|++++
T Consensus 125 ~~~~SpdG~~la-~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~ 202 (706)
T 2z3z_A 125 SLDFSPVGDRVA-Y-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQ 202 (706)
T ss_dssp TCEECTTSSEEE-E-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEEC
T ss_pred CCcCCCCCCEEE-E-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECC
Confidence 346778776543 3 4678888887543 22222333332 48899999999999988
Q ss_pred ------------------------------CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCC-
Q psy9316 71 ------------------------------FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK- 119 (264)
Q Consensus 71 ------------------------------~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg- 119 (264)
.+..|.+||+... ..........|...+..++|+|++ +.+++++.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~ 280 (706)
T 2z3z_A 203 SMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG-KTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRA 280 (706)
T ss_dssp TTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT-EEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTT
T ss_pred CCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC-ceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCC
Confidence 3467889987642 211111112466779999999966 5666666665
Q ss_pred ----cEEEEECCCC-Ccc-------------------------eEEEeecCCCcEEEEEeccCCCccceEEEecccccee
Q psy9316 120 ----TVRIWDARTQ-KSQ-------------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169 (264)
Q Consensus 120 ----~i~vwd~~~~-~~~-------------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~ 169 (264)
.|++||+.++ ... ..+++++.|+.+.+|.++..+.. ...+..|...+.
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~--~~~l~~~~~~v~ 358 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL--IRQVTKGEWEVT 358 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE--EEECCCSSSCEE
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE--EEecCCCCeEEE
Confidence 8999999876 211 12333444566677776533321 223445666676
Q ss_pred e-EEEcCCCCCEEEEEeCCC----cEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCC----CeEEEEEcccC
Q psy9316 170 Q-LCWHATNPDLLSTASGDK----TVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKE----DLVTFIDVVKS 238 (264)
Q Consensus 170 ~-i~~~~~~~~~i~s~~~dg----~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d----~~i~~~d~~~~ 238 (264)
. +.|+|++..+++++..++ .|..||+.++..........+.+++|||||+++++.+.+ +.+++||+.++
T Consensus 359 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 359 NFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp EEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred eeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 6 799997665666666665 677778877664433444567889999999999877554 45999998654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-13 Score=129.87 Aligned_cols=213 Identities=10% Similarity=0.152 Sum_probs=135.5
Q ss_pred ceEeecCCCeeEEEeec-Cc-----eEEecccc--ccccccccCC------------------------CCEEEEEECCC
Q psy9316 15 EYKLLPSGSQFHLVCKI-DD-----YVKHFNTH--NDIKEYQAHG------------------------SKVHSVAWSCD 62 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~-d~-----~~~~~~~~--~~~~~~~~h~------------------------~~V~~l~~s~~ 62 (264)
..++.|.|..+ .+++. |+ .++.|+.. +....+..+. ..|.+++|+||
T Consensus 41 ~~~~SpdG~~l-a~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpD 119 (741)
T 2ecf_A 41 KPKVAPDGSRV-TFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPD 119 (741)
T ss_dssp EEEECTTSSEE-EEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTT
T ss_pred CceEecCCCEE-EEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCC
Confidence 34677777654 45555 77 78888653 3333333332 23789999999
Q ss_pred CCeEEEEECCCcEEEEEeccCC--CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce-------
Q psy9316 63 GRRLASGSFDKSVAIFALDKKG--DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI------- 133 (264)
Q Consensus 63 g~~l~s~s~dg~i~v~~~~~~~--~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~------- 133 (264)
|++|++++. +.|.+|++.... .. ..+..|...+..++|+|++ ++++.++ ++.|++||+.+++...
T Consensus 120 g~~l~~~~~-~~i~~~d~~~~~~~~~---~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 120 AQRLLFPLG-GELYLYDLKQEGKAAV---RQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp SSEEEEEET-TEEEEEESSSCSTTSC---CBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred CCEEEEEeC-CcEEEEECCCCCcceE---EEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 999999886 999999987531 22 2244677889999999966 5666665 5699999987643110
Q ss_pred ----------------------------EEEeecCCC---------------------------------cEEEEEeccC
Q psy9316 134 ----------------------------MLASGSFDK---------------------------------SVAIFALDKK 152 (264)
Q Consensus 134 ----------------------------~~~~~~~d~---------------------------------~i~i~~~~~~ 152 (264)
.++.++.|+ .|.+|++...
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 122322222 3333443320
Q ss_pred CCccceEEEeccccceeeEEEcCCCCCEEEEEe-----CCCcEEEEeCCCCcceeEee-cC-----ceEEEEEcCCCCEE
Q psy9316 153 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS-----GDKTVRIWDARTQKSQIIAT-KG-----ENINITWAPNGNTI 221 (264)
Q Consensus 153 ~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~-----~dg~i~iwD~~t~~~~~~~~-~~-----~~~~v~~sp~g~~l 221 (264)
+..........|...+..++| |++ ..|+.++ .++.|++||+.+++...... .. .+..++|+|||+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 351 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL 351 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred CceEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence 111111000146678899999 865 4555443 36789999999987533321 11 23478999999999
Q ss_pred EEeeCCCeEEEEEcc
Q psy9316 222 AVGNKEDLVTFIDVV 236 (264)
Q Consensus 222 a~gs~d~~i~~~d~~ 236 (264)
++++.|+.+.+|.+.
T Consensus 352 ~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 352 WSSERTGFQHLYRID 366 (741)
T ss_dssp EEECTTSSCEEEEEC
T ss_pred EEecCCCccEEEEEc
Confidence 999999988888765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-13 Score=115.34 Aligned_cols=186 Identities=11% Similarity=0.075 Sum_probs=122.4
Q ss_pred cCCCCEEEEEECCCCCeEEEEEC---CCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEe-CCCcEEEE
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSF---DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS-GDKTVRIW 124 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~---dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s-~dg~i~vw 124 (264)
.+...+..++|+|||+ |++++. ++.|.+|++.. +.......+..+...+..++|+|++ +++++++ .++.+.+|
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~~p~~~a~spdg-~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDG-QTAHKLNTVVAPGTPPAYVAVDEAR-QLVYSANYHKGTAEVM 113 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEET-TEEEEEEEEEEESCCCSEEEEETTT-TEEEEEETTTTEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecC-CcEEEeeeeecCCCCCEEEEECCCC-CEEEEEeCCCCEEEEE
Confidence 4556778899999999 666554 68999999853 3322222234466778899999966 5555556 78999999
Q ss_pred ECCCC-Cc------------------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccc-cceeeEE
Q psy9316 125 DARTQ-KS------------------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT-GSVDQLC 172 (264)
Q Consensus 125 d~~~~-~~------------------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~-~~i~~i~ 172 (264)
|++.. .. ..++++...++.+.+|++...+.......+..+. .....++
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 98621 10 0123444456678888887444433222222222 2567799
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCC--CcceeE-e---ec------CceEEEEEcCCCCEE-EEeeCCCeEEEEEccc
Q psy9316 173 WHATNPDLLSTASGDKTVRIWDART--QKSQII-A---TK------GENINITWAPNGNTI-AVGNKEDLVTFIDVVK 237 (264)
Q Consensus 173 ~~~~~~~~i~s~~~dg~i~iwD~~t--~~~~~~-~---~~------~~~~~v~~sp~g~~l-a~gs~d~~i~~~d~~~ 237 (264)
|+|++..++++...++.+.+||+.. ++.... . .. ..+..++|+|||++| ++...++.|.+||+..
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9997655666677899999999875 332111 1 11 236679999999988 4556689999999863
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.8e-14 Score=130.53 Aligned_cols=201 Identities=9% Similarity=0.055 Sum_probs=126.5
Q ss_pred eEeecCCCeeEEEeecCceEEecccc--ccccccccCCC---CEEEEEECCCCCeEEEEECC---------CcEEEEEec
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGS---KVHSVAWSCDGRRLASGSFD---------KSVAIFALD 81 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~---~V~~l~~s~~g~~l~s~s~d---------g~i~v~~~~ 81 (264)
..+.|.|. +. ..+.|+.++.|+.. +....+..|.. .|.+++|+|||++|++++.+ +.+.+||+.
T Consensus 22 ~~~spdg~-~~-~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 99 (723)
T 1xfd_A 22 AKWISDTE-FI-YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (723)
T ss_dssp CCBSSSSC-BC-CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred cEEcCCCc-EE-EEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC
Confidence 34555554 32 23568889998764 33445555654 49999999999999999875 778899987
Q ss_pred cCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEE
Q psy9316 82 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161 (264)
Q Consensus 82 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~ 161 (264)
... .........|...+..++|+|++ +.++.++. +.|++||+.+++...+. .....+. .+
T Consensus 100 ~~~-~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~-~~~~~~~----------------~~ 159 (723)
T 1xfd_A 100 HGD-PQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVV-STGKEGV----------------IY 159 (723)
T ss_dssp SCC-CEECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEE-CCCBTTT----------------EE
T ss_pred CCc-eEeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEe-cCCCCCc----------------eE
Confidence 532 21111122344558889999976 55666664 79999999876543221 1100000 01
Q ss_pred eccc---------cceeeEEEcCCCCCEEEEEeCCC----------------------------------cEEEEeCCCC
Q psy9316 162 RGHT---------GSVDQLCWHATNPDLLSTASGDK----------------------------------TVRIWDARTQ 198 (264)
Q Consensus 162 ~~h~---------~~i~~i~~~~~~~~~i~s~~~dg----------------------------------~i~iwD~~t~ 198 (264)
.++. ..+..+.|+|++ ..|++++.|+ .|++||+.++
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred CcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence 1111 234678898864 5555555432 7999999987
Q ss_pred cceeEee--------cCceEEEEEcCCCCEEEEeeCC----CeEEEEEcccCC
Q psy9316 199 KSQIIAT--------KGENINITWAPNGNTIAVGNKE----DLVTFIDVVKSL 239 (264)
Q Consensus 199 ~~~~~~~--------~~~~~~v~~sp~g~~la~gs~d----~~i~~~d~~~~~ 239 (264)
+...... ...+..++|||||++|++.+.. ..|++||+.++.
T Consensus 239 ~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~ 291 (723)
T 1xfd_A 239 THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (723)
T ss_dssp CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence 6422211 2346789999999999777543 579999987543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-11 Score=105.55 Aligned_cols=217 Identities=12% Similarity=0.137 Sum_probs=133.2
Q ss_pred eEeecCCCeeEEEeecC----ceEEeccccc------cccccccCCCCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCC
Q psy9316 16 YKLLPSGSQFHLVCKID----DYVKHFNTHN------DIKEYQAHGSKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKG 84 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d----~~~~~~~~~~------~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~ 84 (264)
..+.|.+.. +.++..+ +.+..|.... .+.....+......+++ ++++|++++ .++.|.+|++...+
T Consensus 55 l~~spdg~~-l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g 131 (361)
T 3scy_A 55 LIPSADGKF-VYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDG 131 (361)
T ss_dssp EEECTTSSE-EEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTS
T ss_pred EEECCCCCE-EEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCC
Confidence 356666654 3444443 6777664321 22233345566778888 888888877 57899999987554
Q ss_pred CCcccEEEecc-----------cccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------c--------
Q psy9316 85 DLNKEVVYRGH-----------TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------Q-------- 132 (264)
Q Consensus 85 ~~~~~~~~~~h-----------~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------~-------- 132 (264)
..........+ ...+.+++|+|++..++++...++.+.+|+++.... .
T Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 211 (361)
T 3scy_A 132 ALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGS 211 (361)
T ss_dssp CBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTC
T ss_pred cCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCC
Confidence 33221111111 223577999997654555555689999998764321 0
Q ss_pred ------------eEEEeecCCCcEEEEEeccCCCccceEEE---eccccceeeEEEcCCCCCEEEEEeC-CCcEEEEeCC
Q psy9316 133 ------------IMLASGSFDKSVAIFALDKKGDLNKEVVY---RGHTGSVDQLCWHATNPDLLSTASG-DKTVRIWDAR 196 (264)
Q Consensus 133 ------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~---~~h~~~i~~i~~~~~~~~~i~s~~~-dg~i~iwD~~ 196 (264)
.++++...++.|.+|++.. +........ ..+......++|+|++..++++... ++.|.+|++.
T Consensus 212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred CCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 1233444678889998862 222211112 1233446789999976544455555 6899999986
Q ss_pred --CCcceeE---eecCceEEEEEcCCCCEEEEee-CCCeEEEEEcc
Q psy9316 197 --TQKSQII---ATKGENINITWAPNGNTIAVGN-KEDLVTFIDVV 236 (264)
Q Consensus 197 --t~~~~~~---~~~~~~~~v~~sp~g~~la~gs-~d~~i~~~d~~ 236 (264)
++..... .....+..++|+|+|++|++++ .++.+.+|++.
T Consensus 291 ~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 291 ETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp TTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 3442221 1123567899999999998887 67899997654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-12 Score=110.53 Aligned_cols=184 Identities=15% Similarity=0.127 Sum_probs=120.6
Q ss_pred CCCCEEEEEECCCCCeEEEEECC----CcEEEEEeccC-CCCcccEEEecccccEEeEEEecCCCCeEEEEe-CCCcEEE
Q psy9316 50 HGSKVHSVAWSCDGRRLASGSFD----KSVAIFALDKK-GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS-GDKTVRI 123 (264)
Q Consensus 50 h~~~V~~l~~s~~g~~l~s~s~d----g~i~v~~~~~~-~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s-~dg~i~v 123 (264)
+...+..++|+|||++|++++.+ +.|.+|+++.. +..........+......+++ ++ +++++++ .++.+.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg-~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NG-KNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CS-SEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CC-CEEEEEECCCCEEEE
Confidence 66778889999999999999886 79999998754 322222222334455666776 34 4555555 6899999
Q ss_pred EECCCCCc----------------------------------ceEEEeecCCCcEEEEEeccCCC------ccce----E
Q psy9316 124 WDARTQKS----------------------------------QIMLASGSFDKSVAIFALDKKGD------LNKE----V 159 (264)
Q Consensus 124 wd~~~~~~----------------------------------~~~~~~~~~d~~i~i~~~~~~~~------~~~~----~ 159 (264)
|++..... ..++++...++.+.+|+++..+. +... .
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 99864210 01234444567888998875442 2111 1
Q ss_pred EEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe-e---c---CceEEEEEcCCCCEEEEeeCC--CeE
Q psy9316 160 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA-T---K---GENINITWAPNGNTIAVGNKE--DLV 230 (264)
Q Consensus 160 ~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~-~---~---~~~~~v~~sp~g~~la~gs~d--~~i 230 (264)
....+......++|+|++..++++...++.|.+||+.++...... . . ..+..++|+|||++|+++..+ +.+
T Consensus 205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i 284 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV 284 (361)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence 122234457789999976445555447999999999876532211 1 1 224689999999999776654 899
Q ss_pred EEEEcc
Q psy9316 231 TFIDVV 236 (264)
Q Consensus 231 ~~~d~~ 236 (264)
.+|++.
T Consensus 285 ~v~~~~ 290 (361)
T 3scy_A 285 AIFKVD 290 (361)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999985
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-13 Score=122.42 Aligned_cols=209 Identities=12% Similarity=0.139 Sum_probs=135.5
Q ss_pred EeecCCCeeEEEeecCceEEecccc-ccccccccCC-CCEEEEEECCCCCeEEEEEC---CCcEEEEEecc--CCCCccc
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTH-NDIKEYQAHG-SKVHSVAWSCDGRRLASGSF---DKSVAIFALDK--KGDLNKE 89 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~h~-~~V~~l~~s~~g~~l~s~s~---dg~i~v~~~~~--~~~~~~~ 89 (264)
.+.|.|..+......|+.+++|... ...+.+..|. ..+..+.|+|| +.+++++. +....+|.++. .+...
T Consensus 28 ~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-- 104 (582)
T 3o4h_A 28 QGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-- 104 (582)
T ss_dssp EEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE--
T ss_pred ecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc--
Confidence 3456666544334448888888753 2334455555 68999999999 77777775 55677877765 33322
Q ss_pred EEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce----------------EEEeecCC----CcEEEEEe
Q psy9316 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI----------------MLASGSFD----KSVAIFAL 149 (264)
Q Consensus 90 ~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----------------~~~~~~~d----~~i~i~~~ 149 (264)
.+... ..+...+|+|+++.++++++.++.+.+||+++++... .++.++.+ ..|.+|++
T Consensus 105 -~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~ 182 (582)
T 3o4h_A 105 -RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNL 182 (582)
T ss_dssp -ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred -cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcC
Confidence 12111 1233557888776655555555566699998765321 23333333 44566665
Q ss_pred ccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCC--cEEEEeCCCCcceeEe-ecCceEEEE--------EcCCC
Q psy9316 150 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK--TVRIWDARTQKSQIIA-TKGENINIT--------WAPNG 218 (264)
Q Consensus 150 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg--~i~iwD~~t~~~~~~~-~~~~~~~v~--------~sp~g 218 (264)
... .. ..+..|...+..++|+|++ ..|+++..++ .|++||+.+++..... +...+..++ |+|||
T Consensus 183 ~~g-~~---~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 257 (582)
T 3o4h_A 183 SSG-GL---RVFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDG 257 (582)
T ss_dssp TTC-CC---EEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTS
T ss_pred CCC-Cc---eEeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCC
Confidence 432 22 2456777889999999965 5667888888 8999999988755211 122233455 99999
Q ss_pred CEEEEeeCCCeEEEEEc
Q psy9316 219 NTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 219 ~~la~gs~d~~i~~~d~ 235 (264)
..+++++.++.+++|++
T Consensus 258 ~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 258 RLAVVARREGRSAVFID 274 (582)
T ss_dssp CEEEEEEETTEEEEEET
T ss_pred cEEEEEEcCCcEEEEEE
Confidence 99999999999999998
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=120.56 Aligned_cols=175 Identities=15% Similarity=0.152 Sum_probs=118.3
Q ss_pred CCCEEEEEECCCCCeEEEEEC-CCcEEEEEeccCCCCcccEEEeccc-ccEEeEEEecCCCCeEEEEeC---CCcEEEEE
Q psy9316 51 GSKVHSVAWSCDGRRLASGSF-DKSVAIFALDKKGDLNKEVVYRGHT-GSVDQLCWHATNPDLLSTASG---DKTVRIWD 125 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~-dg~i~v~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~l~s~s~---dg~i~vwd 125 (264)
..+|.+++|+|||++|+.++. ||++++|+++. +.. ..+..|. ..+..+.|+|+ +++++++. +....+|.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~-g~~---~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG-GET---VKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEET-TEE---EECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcC-CCc---EeeecccccccccccCCCC--eEEEEeccCCCCcceEEEE
Confidence 567999999999999999887 99999999743 221 2233444 57889999985 67776665 45556654
Q ss_pred CCC----CCc------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEE
Q psy9316 126 ART----QKS------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST 183 (264)
Q Consensus 126 ~~~----~~~------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s 183 (264)
++. ... ...++++..+ .+.+|++... .. ..+..+.. ..+.|+|+ +..|++
T Consensus 95 ~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g-~~---~~l~~~~~--~~~~~spD-G~~la~ 166 (582)
T 3o4h_A 95 VNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATED-RVALYALDGG-GL---RELARLPG--FGFVSDIR-GDLIAG 166 (582)
T ss_dssp EETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETT-EE---EEEEEESS--CEEEEEEE-TTEEEE
T ss_pred EeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCC-CceEEEccCC-cE---EEeecCCC--ceEEECCC-CCEEEE
Confidence 432 110 0123333333 3448877532 11 12222322 77889985 467776
Q ss_pred EeCC----CcEEEEeCCCCcceeEe-ecCceEEEEEcCCCCEEEEeeCCC--eEEEEEcccCC
Q psy9316 184 ASGD----KTVRIWDARTQKSQIIA-TKGENINITWAPNGNTIAVGNKED--LVTFIDVVKSL 239 (264)
Q Consensus 184 ~~~d----g~i~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~~la~gs~d~--~i~~~d~~~~~ 239 (264)
++.+ +.|++||+.+++..... ..+.+..++|||||+.|+++..++ .|++||+.++.
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred EEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence 6666 78999999988764332 345578899999999999888888 89999987543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-12 Score=125.54 Aligned_cols=204 Identities=9% Similarity=0.087 Sum_probs=131.3
Q ss_pred EeecCceEE-ecccc-ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEe
Q psy9316 28 VCKIDDYVK-HFNTH-NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 105 (264)
Q Consensus 28 ~~~~d~~~~-~~~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 105 (264)
+++.+..++ .|+.. ...+.+.+|...+..++|+|||++|++++.++.|.+||+.. +.. ......|...+..++|+
T Consensus 353 ~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~--~~~~~~~~~~v~~~~~S 429 (1045)
T 1k32_A 353 HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKP--TVIERSREAMITDFTIS 429 (1045)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCE--EEEEECSSSCCCCEEEC
T ss_pred EEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC-Cce--EEeccCCCCCccceEEC
Confidence 333344555 55432 22334457888999999999999999999999999999864 222 23455788889999999
Q ss_pred cCCCCeEEEEeCC----------CcEEEEECCCCCcce------------------EEEeecCCCcEEEEEe--------
Q psy9316 106 ATNPDLLSTASGD----------KTVRIWDARTQKSQI------------------MLASGSFDKSVAIFAL-------- 149 (264)
Q Consensus 106 ~~~~~~l~s~s~d----------g~i~vwd~~~~~~~~------------------~~~~~~~d~~i~i~~~-------- 149 (264)
|++ +++++++.+ +.|++||+.+++... .++.++.++...+|+.
T Consensus 430 pDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~ 508 (1045)
T 1k32_A 430 DNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE 508 (1045)
T ss_dssp TTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECC
T ss_pred CCC-CeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccc
Confidence 966 566666554 489999998754211 1222222222112211
Q ss_pred ----------ccCCC----------------------ccceEEEeccccceeeEEEcCCCCCEEEE-------------E
Q psy9316 150 ----------DKKGD----------------------LNKEVVYRGHTGSVDQLCWHATNPDLLST-------------A 184 (264)
Q Consensus 150 ----------~~~~~----------------------~~~~~~~~~h~~~i~~i~~~~~~~~~i~s-------------~ 184 (264)
..... ......+..|...+..+.++|++ .++++ .
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg-~~~~~~~~~g~~~~~~~~~ 587 (1045)
T 1k32_A 509 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS-ILIYSVPVHGEFAAYYQGA 587 (1045)
T ss_dssp SCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE-EEEEECCCCCSHHHHHHCC
T ss_pred cCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCC-eEEEEecccCccccccccc
Confidence 10000 00112233455678889998854 55553 2
Q ss_pred eCCCcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 185 SGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 185 ~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
...+.+.+||+.+++..... ..+..++|||||++|++++.+ .+++||+.++.
T Consensus 588 ~~~~~l~~~d~~~~~~~~l~--~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 588 PEKGVLLKYDVKTRKVTEVK--NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCCEEEEEEETTTCCEEEEE--EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred CCCceEEEEECCCCcEEEee--cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 23567888999988754333 456788999999999999866 78999997644
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-12 Score=108.53 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=125.1
Q ss_pred eEeecCCCeeEEEe-ecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEE
Q psy9316 16 YKLLPSGSQFHLVC-KIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY 92 (264)
Q Consensus 16 ~~~~~~~~~~~~~~-~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~ 92 (264)
..+.|.+..+.+.. ..++.+..|+. .+.+..+..+...+.++.|+|++++|++++.++.|.+||..... .. ..+
T Consensus 146 ~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~-~~--~~~ 222 (353)
T 3vgz_A 146 LVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK-IL--SRK 222 (353)
T ss_dssp EEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE-EE--EEE
T ss_pred EEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe-EE--EEE
Confidence 36667776654443 23677888765 34455555466668899999999999999999999999976422 11 122
Q ss_pred e----cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccce
Q psy9316 93 R----GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV 168 (264)
Q Consensus 93 ~----~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i 168 (264)
. ++...+..++|+|++..++++...++.|.+||+++++....+. .. .+
T Consensus 223 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------------------------~~-~~- 274 (353)
T 3vgz_A 223 KLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA--------------------------AP-ES- 274 (353)
T ss_dssp ECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE--------------------------CS-SC-
T ss_pred EcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE--------------------------cC-CC-
Confidence 2 2455678899999775555555557999999997755321110 00 11
Q ss_pred eeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE-eecCceEEEEEcCCCCEEEEeeCCC
Q psy9316 169 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII-ATKGENINITWAPNGNTIAVGNKED 228 (264)
Q Consensus 169 ~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~gs~d~ 228 (264)
..+.|+|++..++++...++.|.+||..+.+.... .....+..++|+|+|++|+++..++
T Consensus 275 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 275 LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence 35788887665677776899999999998875332 3344678899999999888877664
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-13 Score=126.47 Aligned_cols=198 Identities=12% Similarity=0.132 Sum_probs=125.9
Q ss_pred CCCCceEeecCCCeeEEEeecCceEEecccc--ccccccccCCC---CEEEEEECCCCCeEEEEEC---------CCcEE
Q psy9316 11 PKSPEYKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGS---KVHSVAWSCDGRRLASGSF---------DKSVA 76 (264)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~---~V~~l~~s~~g~~l~s~s~---------dg~i~ 76 (264)
+.+|+.+++|.+ .+. ....|+.++.|+.. +....+.+|.. .+.+++|+|||++|+.++. ++.|.
T Consensus 16 ~~~~~~~~s~dg-~~~-~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 16 YKTFFPNWISGQ-EYL-HQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCCCCCEESSSS-EEE-EECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred CCCCccEECCCC-eEE-EEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence 457888899988 543 34468999998753 33333434433 3889999999999999876 78999
Q ss_pred EEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCcc
Q psy9316 77 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLN 156 (264)
Q Consensus 77 v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~ 156 (264)
+|++........ ......+..++|+|++ +.|+.+. |+.|++||+.+++...+...+. .
T Consensus 94 ~~d~~~g~~~~~----~~l~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~~~~-~--------------- 151 (719)
T 1z68_A 94 IYDLSNGEFVRG----NELPRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITFNGR-E--------------- 151 (719)
T ss_dssp EEETTTTEECCS----SCCCSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCCCCB-T---------------
T ss_pred EEECCCCccccc----eecCcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEecCCC-c---------------
Confidence 999864221000 0112458889999976 4565554 7899999998765321110000 0
Q ss_pred ceEEEeccccc---------eeeEEEcCCCCCEEEEEeCCC----------------------------------cEEEE
Q psy9316 157 KEVVYRGHTGS---------VDQLCWHATNPDLLSTASGDK----------------------------------TVRIW 193 (264)
Q Consensus 157 ~~~~~~~h~~~---------i~~i~~~~~~~~~i~s~~~dg----------------------------------~i~iw 193 (264)
...+.++... ...+.|+|++ ..|++++.|. .|++|
T Consensus 152 -~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 152 -NKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp -TTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred -CCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 0012233222 2578999864 5666666442 78899
Q ss_pred eCCCCcce--eEe--------ecCceEEEEEcCCCCEEEEeeCC----CeEEEEE
Q psy9316 194 DARTQKSQ--IIA--------TKGENINITWAPNGNTIAVGNKE----DLVTFID 234 (264)
Q Consensus 194 D~~t~~~~--~~~--------~~~~~~~v~~sp~g~~la~gs~d----~~i~~~d 234 (264)
|+.+++.. ... +...+.+++||||++.+++.... ..|.+||
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 99987641 111 22346789999998877775433 2488889
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.7e-12 Score=117.01 Aligned_cols=213 Identities=12% Similarity=0.112 Sum_probs=134.9
Q ss_pred eEeecCCCeeEEEeecCceEEeccccc--cccccccCCCC----------------EEEEEECCCCCeEEEEECCC----
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTHN--DIKEYQAHGSK----------------VHSVAWSCDGRRLASGSFDK---- 73 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~h~~~----------------V~~l~~s~~g~~l~s~s~dg---- 73 (264)
..+.|.|..+ ++++ ++.++.|+... ..+....+... +..+.|+|||++|+.++.|+
T Consensus 157 ~~~SPDG~~l-a~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~ 234 (741)
T 2ecf_A 157 AKLSPKGGFV-SFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVP 234 (741)
T ss_dssp EEECTTSSEE-EEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSC
T ss_pred ccCCCCCCEE-EEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCc
Confidence 3677777653 3333 56777776532 22222233322 47899999999999998765
Q ss_pred -----------------------------cEEEEEeccCCCCcccEEEe-cccccEEeEEEecCCCCeEEEEe-----CC
Q psy9316 74 -----------------------------SVAIFALDKKGDLNKEVVYR-GHTGSVDQLCWHATNPDLLSTAS-----GD 118 (264)
Q Consensus 74 -----------------------------~i~v~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~l~s~s-----~d 118 (264)
.|.+||+...+.... .... .|...+..++| |++. .|+.++ .+
T Consensus 235 ~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~-pDg~-~l~~~~~~~~~~~ 311 (741)
T 2ecf_A 235 VQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQW-IDLGKEQDIYLARVNW-RDPQ-HLSFQRQSRDQKK 311 (741)
T ss_dssp EEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEE-ECCCSCSSEEEEEEEE-EETT-EEEEEEEETTSSE
T ss_pred eEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEE-ecCCCCcceEEEEEEe-CCCC-EEEEEEecccCCe
Confidence 677777653022211 1111 47778999999 9764 454443 35
Q ss_pred CcEEEEECCCCCcc-----------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeE-EEc
Q psy9316 119 KTVRIWDARTQKSQ-----------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL-CWH 174 (264)
Q Consensus 119 g~i~vwd~~~~~~~-----------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i-~~~ 174 (264)
..|++||+.+++.. .++++++.|+...||.++..+. ...+..|...+..+ .|+
T Consensus 312 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~---~~~l~~~~~~v~~~~~~s 388 (741)
T 2ecf_A 312 LDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK---AAALTHGNWSVDELLAVD 388 (741)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC---EEESCCSSSCEEEEEEEE
T ss_pred EEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC---eeeeeecceEEEeEeEEe
Confidence 77999998765321 1345566677778888765443 23445666677776 599
Q ss_pred CCCCCEEEEEeCCC--cEEEEeCCC-Cc-ceeEeecCceEEEEEcCCCCEEEEeeCC----CeEEEEEcc
Q psy9316 175 ATNPDLLSTASGDK--TVRIWDART-QK-SQIIATKGENINITWAPNGNTIAVGNKE----DLVTFIDVV 236 (264)
Q Consensus 175 ~~~~~~i~s~~~dg--~i~iwD~~t-~~-~~~~~~~~~~~~v~~sp~g~~la~gs~d----~~i~~~d~~ 236 (264)
|++..++++++.++ .++||++.. +. .........+..++|||||++|++...+ ..++++|..
T Consensus 389 ~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 389 EKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp TTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred CCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 87655666666666 899998764 22 2222224456789999999999877544 458888864
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.9e-12 Score=123.37 Aligned_cols=188 Identities=9% Similarity=0.069 Sum_probs=134.9
Q ss_pred CceEee-cCCCeeEEEeecCceEEeccccc-cccccccCCC-CEEEEEECCCCCeEEEEECCCcEE-EEEeccCCCCccc
Q psy9316 14 PEYKLL-PSGSQFHLVCKIDDYVKHFNTHN-DIKEYQAHGS-KVHSVAWSCDGRRLASGSFDKSVA-IFALDKKGDLNKE 89 (264)
Q Consensus 14 ~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~h~~-~V~~l~~s~~g~~l~s~s~dg~i~-v~~~~~~~~~~~~ 89 (264)
....+. |.|..+. ++. ++.+..++... ....+..|.+ .+..++|+ ||+.|+.++.+..+. +|++.. +..
T Consensus 299 ~~~~~S~pdG~~la-~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~~--- 371 (1045)
T 1k32_A 299 FAEDFSPLDGDLIA-FVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GKA--- 371 (1045)
T ss_dssp GEEEEEECGGGCEE-EEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CCE---
T ss_pred ceeeecCCCCCEEE-EEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CCc---
Confidence 344666 7665543 333 77777776532 3344567777 89999999 999999999887787 888653 221
Q ss_pred EEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEecccccee
Q psy9316 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169 (264)
Q Consensus 90 ~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~ 169 (264)
..+..|...+..++|+|++ +++++++.++.+++||+++++... ...+|...+.
T Consensus 372 ~~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~--------------------------~~~~~~~~v~ 424 (1045)
T 1k32_A 372 EKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTV--------------------------IERSREAMIT 424 (1045)
T ss_dssp EECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEE--------------------------EEECSSSCCC
T ss_pred eEecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEE--------------------------eccCCCCCcc
Confidence 2233677889999999965 688889999999999998754221 1234667788
Q ss_pred eEEEcCCCCCEEEEEeCC----------CcEEEEeCCCCcceeE-eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 170 QLCWHATNPDLLSTASGD----------KTVRIWDARTQKSQII-ATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 170 ~i~~~~~~~~~i~s~~~d----------g~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.++|+|++ .+|++++.+ +.|++||+.+++.... .+...+..++|+|||++|++++.++....|+..
T Consensus 425 ~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 425 DFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred ceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 99999965 566666554 4999999998763222 223456789999999999999998888888754
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-12 Score=119.13 Aligned_cols=212 Identities=15% Similarity=0.103 Sum_probs=123.6
Q ss_pred eEeecCCCeeEEEeecCceEEeccccc-cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccC----CCCcccE
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTHN-DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK----GDLNKEV 90 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~----~~~~~~~ 90 (264)
..+.|. ..+. ...++.+++|+... ....+..+.+.+.+++|+|||++|+.+ .|+.|.+|++... +....
T Consensus 87 ~~~spd-~~~~--~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~-- 160 (706)
T 2z3z_A 87 TLDAGR-GLVV--LFTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIA-- 160 (706)
T ss_dssp EEETTT-TEEE--EEETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEE--
T ss_pred EEECCC-CeEE--EEECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEE--
Confidence 355565 4433 23578888887643 334455677788999999999999995 6899999998751 22111
Q ss_pred EEeccccc--------------EEeEEEecCCCCeEEEEeCC-CcEE---EEECCCCCcceE----EEeec--CCCcEEE
Q psy9316 91 VYRGHTGS--------------VDQLCWHATNPDLLSTASGD-KTVR---IWDARTQKSQIM----LASGS--FDKSVAI 146 (264)
Q Consensus 91 ~~~~h~~~--------------v~~i~~~~~~~~~l~s~s~d-g~i~---vwd~~~~~~~~~----~~~~~--~d~~i~i 146 (264)
....+... +.++.|+|++ ++|++++.| ..+. +.+......... -..+. .+..|.+
T Consensus 161 ~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~ 239 (706)
T 2z3z_A 161 VTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI 239 (706)
T ss_dssp SCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred eccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence 11122222 4789999966 566666522 1111 111111000000 00011 1223445
Q ss_pred EEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCC-----cEEEEeCCCC-cceeEe-e-cC----ceEEEEE
Q psy9316 147 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK-----TVRIWDARTQ-KSQIIA-T-KG----ENINITW 214 (264)
Q Consensus 147 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg-----~i~iwD~~t~-~~~~~~-~-~~----~~~~v~~ 214 (264)
|++.... .........|...+..+.|+|++ ..|++++.++ .|++||+.++ ...... . .. .+..++|
T Consensus 240 ~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T 2z3z_A 240 YHLATGK-TVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF 317 (706)
T ss_dssp EETTTTE-EEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred EECCCCc-eEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence 5543211 10000112455678999999965 5666666665 9999999998 332222 1 11 1246899
Q ss_pred cC--CCCEEEEeeCCCeEEEEEcc
Q psy9316 215 AP--NGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 215 sp--~g~~la~gs~d~~i~~~d~~ 236 (264)
+| +|+++++++.|+.+.+|++.
T Consensus 318 sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 318 LPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CTTCSSEEEEEECTTSSCEEEEEE
T ss_pred ecCCCCEEEEEEccCCccEEEEEE
Confidence 99 99999999999999999876
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.8e-11 Score=100.26 Aligned_cols=201 Identities=10% Similarity=-0.033 Sum_probs=123.6
Q ss_pred eEEEeecCceEEecccc--ccccccccCC-C-CEEEEEECCCCCeEEE-EECCCcEEEEEeccCCCCcccEEEe-c----
Q psy9316 25 FHLVCKIDDYVKHFNTH--NDIKEYQAHG-S-KVHSVAWSCDGRRLAS-GSFDKSVAIFALDKKGDLNKEVVYR-G---- 94 (264)
Q Consensus 25 ~~~~~~~d~~~~~~~~~--~~~~~~~~h~-~-~V~~l~~s~~g~~l~s-~s~dg~i~v~~~~~~~~~~~~~~~~-~---- 94 (264)
+.+++..++.++.|+.. +.+..+.... . .+..++|+|++++++. ++.++.|.+||+... ... ..+. .
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-~~~--~~~~~~~~~~ 79 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETL--GRIDLSTPEE 79 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEE--EEEECCBTTE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC-CeE--eeEEcCCccc
Confidence 45667788999888753 3444444222 2 4788999999987755 455789999997642 221 1122 1
Q ss_pred ccccEEeEEEecCCCCeEEEEe------------CCCcEEEEECCCCCcceE------------------EEeecCCCcE
Q psy9316 95 HTGSVDQLCWHATNPDLLSTAS------------GDKTVRIWDARTQKSQIM------------------LASGSFDKSV 144 (264)
Q Consensus 95 h~~~v~~i~~~~~~~~~l~s~s------------~dg~i~vwd~~~~~~~~~------------------~~~~~~d~~i 144 (264)
|...+..++|+|++ +++++++ .++.|.+||+.+++.... ++++ ++.+
T Consensus 80 ~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i 156 (337)
T 1pby_B 80 RVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDL 156 (337)
T ss_dssp EEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSE
T ss_pred ccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeE
Confidence 12356788999866 4565554 579999999987543211 1112 4566
Q ss_pred EEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCC-----------------------cEEEEeCCCCcce
Q psy9316 145 AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK-----------------------TVRIWDARTQKSQ 201 (264)
Q Consensus 145 ~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg-----------------------~i~iwD~~t~~~~ 201 (264)
.+|++..... ...+..+ .....+.|+|++..+++++..++ .|.+||+.+++..
T Consensus 157 ~~~d~~~~~~---~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 232 (337)
T 1pby_B 157 HVMDPEAGTL---VEDKPIQ-SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp EEEETTTTEE---EEEECST-TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred EEEECCCCcE---eeeeecc-ccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence 7777643211 1111111 12345567776544444333333 4689999887653
Q ss_pred eEe---ecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 202 IIA---TKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 202 ~~~---~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
... ....+..++|+|+|++++++ ++.|++||+..
T Consensus 233 ~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~ 269 (337)
T 1pby_B 233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK 269 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence 211 22346789999999999888 79999999865
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-10 Score=100.70 Aligned_cols=190 Identities=8% Similarity=0.086 Sum_probs=115.0
Q ss_pred cCceEEecccc---ccccccc----cCCCCEEEEEECCCCCeEEEEEC-CCcEEEEEeccCCCCcccEEEe--cccccEE
Q psy9316 31 IDDYVKHFNTH---NDIKEYQ----AHGSKVHSVAWSCDGRRLASGSF-DKSVAIFALDKKGDLNKEVVYR--GHTGSVD 100 (264)
Q Consensus 31 ~d~~~~~~~~~---~~~~~~~----~h~~~V~~l~~s~~g~~l~s~s~-dg~i~v~~~~~~~~~~~~~~~~--~h~~~v~ 100 (264)
.++.+..|... +....+. .+...+.+++|+|||++|+++.. ++.|.+|+++..+.......+. .|...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 57777777542 2222222 24567999999999999988764 6799999986323322111222 2355688
Q ss_pred eEEEecCCCCeEEEEe-CCCcEEEEECCC--CCcceEEEeecCCCcEEEEEeccCCCccceEEEecccc------ceeeE
Q psy9316 101 QLCWHATNPDLLSTAS-GDKTVRIWDART--QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG------SVDQL 171 (264)
Q Consensus 101 ~i~~~~~~~~~l~s~s-~dg~i~vwd~~~--~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~------~i~~i 171 (264)
.++|+|++ +++++++ .++.+.+|+++. ++..... ..+.. +.. .+.+|.. .+..+
T Consensus 197 ~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~-----------~~~~~---~~~--~~~g~~~~~~~~~~~~~i 259 (365)
T 1jof_A 197 WVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTH-----------HSFPL---IPP--GIPDRDPETGKGLYRADV 259 (365)
T ss_dssp EEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEE-----------EEEES---SCT--TCCCBCTTTSSBSEEEEE
T ss_pred EeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEcc-----------ceEEc---CCC--CcCCcccccccccccccE
Confidence 99999966 4555555 478999998753 2211000 00000 000 0012222 46788
Q ss_pred E-EcCCCCCEEEEEeCCC-----cEEEEeCC-CCcceeE---e--ecCceEEEEEcC---CCCEEEEeeCC-CeEEEEEc
Q psy9316 172 C-WHATNPDLLSTASGDK-----TVRIWDAR-TQKSQII---A--TKGENINITWAP---NGNTIAVGNKE-DLVTFIDV 235 (264)
Q Consensus 172 ~-~~~~~~~~i~s~~~dg-----~i~iwD~~-t~~~~~~---~--~~~~~~~v~~sp---~g~~la~gs~d-~~i~~~d~ 235 (264)
+ |+|++..++++...++ .|.+||+. +++.... . ....+..++|+| +|++|++++.+ +.|.+|++
T Consensus 260 ~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 260 CALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred EEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 9 9997654444433333 89999996 4543221 1 122356789999 89999998764 89999998
Q ss_pred cc
Q psy9316 236 VK 237 (264)
Q Consensus 236 ~~ 237 (264)
..
T Consensus 340 ~~ 341 (365)
T 1jof_A 340 KD 341 (365)
T ss_dssp ET
T ss_pred ch
Confidence 64
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-10 Score=105.28 Aligned_cols=215 Identities=10% Similarity=0.073 Sum_probs=124.4
Q ss_pred ceEeecCCCeeEEEeecC---------ceEEecccccc----ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEec
Q psy9316 15 EYKLLPSGSQFHLVCKID---------DYVKHFNTHND----IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALD 81 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d---------~~~~~~~~~~~----~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~ 81 (264)
...+.|.|..+ +++..+ +.+++|+.... +.....|...+..++|+|||++|+.++. +.|.+|++.
T Consensus 65 ~~~~SpDg~~l-~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~ 142 (723)
T 1xfd_A 65 RYEISPDREYA-LFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHV 142 (723)
T ss_dssp EEEECTTSSEE-EEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSS
T ss_pred eEEECCCCCEE-EEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECC
Confidence 34566766543 344332 56667765322 2223345556889999999999999876 789999876
Q ss_pred cCCCCcccEEEeccccc------------------EEeEEEecCCCCeEEEEeCCC------------------------
Q psy9316 82 KKGDLNKEVVYRGHTGS------------------VDQLCWHATNPDLLSTASGDK------------------------ 119 (264)
Q Consensus 82 ~~~~~~~~~~~~~h~~~------------------v~~i~~~~~~~~~l~s~s~dg------------------------ 119 (264)
... .. .+...+... +..+.|+|++ +.|++++.|+
T Consensus 143 ~g~-~~--~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (723)
T 1xfd_A 143 GKQ-AI--RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY 218 (723)
T ss_dssp SSC-CE--EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred CCc-eE--EEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccC
Confidence 422 21 122222222 3689999966 5666666442
Q ss_pred ----------cEEEEECCCCCcc-------------eE--EEeecCCC--------------cEEEEEeccCCCccceEE
Q psy9316 120 ----------TVRIWDARTQKSQ-------------IM--LASGSFDK--------------SVAIFALDKKGDLNKEVV 160 (264)
Q Consensus 120 ----------~i~vwd~~~~~~~-------------~~--~~~~~~d~--------------~i~i~~~~~~~~~~~~~~ 160 (264)
.+++||+.+++.. .. -+.-+.|| .|.+|++... .... ..
T Consensus 219 ~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~-~~ 296 (723)
T 1xfd_A 219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG-VCTK-KH 296 (723)
T ss_dssp CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC-CEEE-EE
T ss_pred CCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC-cceE-EE
Confidence 7999999765421 00 01112222 3445554322 1111 11
Q ss_pred Eecccccee----eEEEcCCCCCEEEE-EeCCC------cEEEEe-CCCCc---ceeEee-cCceEE-EEEcCCCCEEEE
Q psy9316 161 YRGHTGSVD----QLCWHATNPDLLST-ASGDK------TVRIWD-ARTQK---SQIIAT-KGENIN-ITWAPNGNTIAV 223 (264)
Q Consensus 161 ~~~h~~~i~----~i~~~~~~~~~i~s-~~~dg------~i~iwD-~~t~~---~~~~~~-~~~~~~-v~~sp~g~~la~ 223 (264)
...+...+. .+.|+|++..+++. ...++ .|.+|| ..++. ...... ...+.. ++|+|||+.|++
T Consensus 297 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~ 376 (723)
T 1xfd_A 297 EDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYF 376 (723)
T ss_dssp EEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEE
T ss_pred EeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEE
Confidence 112223333 78999977666554 56677 577788 44444 222221 223444 689999999987
Q ss_pred eeCC---CeEEEEEccc
Q psy9316 224 GNKE---DLVTFIDVVK 237 (264)
Q Consensus 224 gs~d---~~i~~~d~~~ 237 (264)
.+.+ +.+++|++..
T Consensus 377 ~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 377 LSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EESSSCTTCCEEEEECS
T ss_pred EEcCCCCcceEEEEEeC
Confidence 7665 7889999864
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=9.2e-11 Score=99.60 Aligned_cols=149 Identities=9% Similarity=0.017 Sum_probs=92.7
Q ss_pred cCCCeeEEEeecCceEEecccc--ccccccccCC-CCEEEEEECCCCCeEEEE-ECCCcEEEEEeccCCCCcccEEEe-c
Q psy9316 20 PSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHG-SKVHSVAWSCDGRRLASG-SFDKSVAIFALDKKGDLNKEVVYR-G 94 (264)
Q Consensus 20 ~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~-~~V~~l~~s~~g~~l~s~-s~dg~i~v~~~~~~~~~~~~~~~~-~ 94 (264)
+.++.+.+++..++.++.|+.. +.++.+..+. ..+..++|+|++++++.+ ..++.|.+|++.... . ...+. .
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~-~--~~~~~~~ 84 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK-N--TFHANLS 84 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-E--EEEEESC
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc-E--EEEEEcc
Confidence 3445566677889999998753 4445554443 257889999999977654 468899999976421 1 11222 1
Q ss_pred c-----cccEEeEEEecCCCCeEEEEeCC------------CcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccc
Q psy9316 95 H-----TGSVDQLCWHATNPDLLSTASGD------------KTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNK 157 (264)
Q Consensus 95 h-----~~~v~~i~~~~~~~~~l~s~s~d------------g~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~ 157 (264)
+ ...+..++|+|++ +++++++.+ +.|.+||+.+++....
T Consensus 85 ~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~----------------------- 140 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP----------------------- 140 (349)
T ss_dssp CSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC-----------------------
T ss_pred cccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccce-----------------------
Confidence 2 2336788999866 566666644 7888888765332110
Q ss_pred eEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc
Q psy9316 158 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200 (264)
Q Consensus 158 ~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~ 200 (264)
...+ .+...+..++|+|++. +++ + ++.|++||+.+++.
T Consensus 141 ~~~~-~~~~~~~~~~~s~dg~-l~~-~--~~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 141 VRTF-PMPRQVYLMRAADDGS-LYV-A--GPDIYKMDVKTGKY 178 (349)
T ss_dssp SEEE-ECCSSCCCEEECTTSC-EEE-E--SSSEEEECTTTCCE
T ss_pred eeec-cCCCcccceeECCCCc-EEE-c--cCcEEEEeCCCCce
Confidence 0011 1223577788988665 554 3 34499999887653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-10 Score=100.57 Aligned_cols=199 Identities=11% Similarity=0.105 Sum_probs=124.7
Q ss_pred CceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEEC----------CCcEEEEEeccCCCCcccEEEec-----
Q psy9316 32 DDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSF----------DKSVAIFALDKKGDLNKEVVYRG----- 94 (264)
Q Consensus 32 d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~----------dg~i~v~~~~~~~~~~~~~~~~~----- 94 (264)
|+.+..|+. .+.+.++..+..+ .++|+|||++|+++.. ++.|.+||..... .. ..+..
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-~~--~~i~~~~~~~ 104 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT-FE--KEISLPPKRV 104 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC-EE--EEEEECTTBC
T ss_pred cCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc-EE--EEEEcCcccc
Confidence 667777764 3445555555444 8999999999999863 5679999975422 11 11221
Q ss_pred -ccccEEeEEEecCCCCeEEEEeC--CCcEEEEECCCCCcce-------------------EEEeecCCCcEEEEEeccC
Q psy9316 95 -HTGSVDQLCWHATNPDLLSTASG--DKTVRIWDARTQKSQI-------------------MLASGSFDKSVAIFALDKK 152 (264)
Q Consensus 95 -h~~~v~~i~~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~-------------------~~~~~~~d~~i~i~~~~~~ 152 (264)
+......+.++|++ +++++++. ++.|.+||+++.+... .+++.+.|+.+.++++...
T Consensus 105 ~~g~~p~~i~~spdg-~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDG-KFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp CBCCCGGGEEECTTS-SEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred ccCCCcceEEECCCC-CEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 12345678899866 55655553 6899999998764321 2344556777777776442
Q ss_pred CCccc------------------------eEEEeccc---------------------------------cceeeEEEcC
Q psy9316 153 GDLNK------------------------EVVYRGHT---------------------------------GSVDQLCWHA 175 (264)
Q Consensus 153 ~~~~~------------------------~~~~~~h~---------------------------------~~i~~i~~~~ 175 (264)
+.... ...+..+. .+...+.++|
T Consensus 184 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp SSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred CcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence 22110 00000000 0011267777
Q ss_pred CCCCEEEEEe----------CCCcEEEEeCCCCcceeE-eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 176 TNPDLLSTAS----------GDKTVRIWDARTQKSQII-ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 176 ~~~~~i~s~~----------~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
++..++++.. ..+.|.+||+.+.+.... .... +..++|+|+|++|++++. +.|.+||+.++
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 6555555543 135899999999875332 3334 889999999999988886 99999998765
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-11 Score=113.75 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=122.2
Q ss_pred CCCceEeecCCCeeEEEeecCceEEecccc--ccccccccCCCC-----EEEEEECCCCCeEEEEECC---------CcE
Q psy9316 12 KSPEYKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSK-----VHSVAWSCDGRRLASGSFD---------KSV 75 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~-----V~~l~~s~~g~~l~s~s~d---------g~i 75 (264)
+....+++|.+ ++..+. |+.++.|+.. +....+.+|... ...+.|||||++|+.++.+ +.+
T Consensus 18 ~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 18 KLYSLRWISDH-EYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCEEECSSS-EEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred cccccEECCCC-cEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 34556777777 444443 8999998753 334445555432 2447899999999998876 566
Q ss_pred EEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCc
Q psy9316 76 AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDL 155 (264)
Q Consensus 76 ~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~ 155 (264)
.+||+... ... .+..|...+...+|+|++. .|+.+ .|+.|++||+.+++...+...+..+
T Consensus 95 ~~~d~~~~-~~~---~l~~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~-------------- 154 (740)
T 4a5s_A 95 DIYDLNKR-QLI---TEERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTGKED-------------- 154 (740)
T ss_dssp EEEETTTT-EEC---CSSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCSCCBTT--------------
T ss_pred EEEECCCC-cEE---EcccCCCcceeeEECCCCC-EEEEE-ECCeEEEEECCCCceEEEcCCCCcc--------------
Confidence 79998653 221 2345677899999999775 55554 4789999999875532110000000
Q ss_pred cceEEEeccc---------cceeeEEEcCCCCCEEEEEeCC------------------------------------CcE
Q psy9316 156 NKEVVYRGHT---------GSVDQLCWHATNPDLLSTASGD------------------------------------KTV 190 (264)
Q Consensus 156 ~~~~~~~~h~---------~~i~~i~~~~~~~~~i~s~~~d------------------------------------g~i 190 (264)
..+.++. .....+.|+|++ ..|+..+.| ..|
T Consensus 155 ---~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l 230 (740)
T 4a5s_A 155 ---IIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKF 230 (740)
T ss_dssp ---TEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEE
T ss_pred ---ceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEE
Confidence 0111221 122346677643 444443321 158
Q ss_pred EEEeCCC---C---cceeEe-------ecCceEEEEEcCCCCEEEEeeCC----CeEEEEEcccCC
Q psy9316 191 RIWDART---Q---KSQIIA-------TKGENINITWAPNGNTIAVGNKE----DLVTFIDVVKSL 239 (264)
Q Consensus 191 ~iwD~~t---~---~~~~~~-------~~~~~~~v~~sp~g~~la~gs~d----~~i~~~d~~~~~ 239 (264)
++||+.+ + ...... ....+.+++|||||+.++..... ..|.+||+..+.
T Consensus 231 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 231 FVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred EEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 8899998 6 222221 22346789999999977666433 379999988754
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=8e-11 Score=101.90 Aligned_cols=189 Identities=11% Similarity=0.122 Sum_probs=115.6
Q ss_pred ccccccccCCCCEEE-----EEECCCCCeEEEEEC-CCc--EEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEE
Q psy9316 42 NDIKEYQAHGSKVHS-----VAWSCDGRRLASGSF-DKS--VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 113 (264)
Q Consensus 42 ~~~~~~~~h~~~V~~-----l~~s~~g~~l~s~s~-dg~--i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~ 113 (264)
..+..+..|...... .+|+|||++|+.++. ++. |.+|++.. +. ...+...+...+..+.|+|++ +.|+
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-g~--~~~lt~~~~~~~~~~~~spdg-~~l~ 96 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNT-QV--ATQLTEGRGDNTFGGFLSPDD-DALF 96 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTT-CE--EEECCCSSCBCSSSCEECTTS-SEEE
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCC-Cc--eEEeeeCCCCCccceEEcCCC-CEEE
Confidence 344455556555555 789999999999887 775 66666543 21 112233454455567899966 6777
Q ss_pred EEeCCCcEEEEECCCCCcceEE-----------EeecCC--------------------------------CcEEEEEec
Q psy9316 114 TASGDKTVRIWDARTQKSQIML-----------ASGSFD--------------------------------KSVAIFALD 150 (264)
Q Consensus 114 s~s~dg~i~vwd~~~~~~~~~~-----------~~~~~d--------------------------------~~i~i~~~~ 150 (264)
.++.++.+++||+.+++..... ...+.| ..|.+|++.
T Consensus 97 ~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 176 (388)
T 3pe7_A 97 YVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK 176 (388)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred EEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence 7888899999999886543211 001122 234444443
Q ss_pred cCCCccceEEEeccccceeeEEEcC-CCCCEEEEEeCC------CcEEEEeCCCCcceeEee-c--CceEEEEEcCCCCE
Q psy9316 151 KKGDLNKEVVYRGHTGSVDQLCWHA-TNPDLLSTASGD------KTVRIWDARTQKSQIIAT-K--GENINITWAPNGNT 220 (264)
Q Consensus 151 ~~~~~~~~~~~~~h~~~i~~i~~~~-~~~~~i~s~~~d------g~i~iwD~~t~~~~~~~~-~--~~~~~v~~sp~g~~ 220 (264)
.. . ...+..+...+..+.|+| ++ ..|+....+ ..|.++|..++....... . ..+..++|||||+.
T Consensus 177 ~g-~---~~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (388)
T 3pe7_A 177 TG-E---STVILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSA 251 (388)
T ss_dssp TC-C---EEEEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSC
T ss_pred CC-c---eEEeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCE
Confidence 21 1 122334556788899999 54 455554543 378888887765432222 2 13567899999998
Q ss_pred EEEeeCC-----CeEEEEEcccCC
Q psy9316 221 IAVGNKE-----DLVTFIDVVKSL 239 (264)
Q Consensus 221 la~gs~d-----~~i~~~d~~~~~ 239 (264)
|+..+.+ ..|++||+..+.
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 252 LVYVSYLKGSPDRFIYSADPETLE 275 (388)
T ss_dssp EEEEEEETTCCCEEEEEECTTTCC
T ss_pred EEEEecCCCCCcceEEEEecCCCc
Confidence 8665542 239999987643
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-10 Score=100.28 Aligned_cols=183 Identities=8% Similarity=0.037 Sum_probs=113.0
Q ss_pred CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCC-eEEEEe-------------
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD-LLSTAS------------- 116 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~-~l~s~s------------- 116 (264)
...+..++|+|+|++|++++.+ .|.+|+++..+..........+ +.+.+++|+|++.. ++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 3467889999999999999888 9999998633332211111111 23556788886643 344543
Q ss_pred CCCcEEEEECCC-CCcc-----------------------eEEE-eecCCCcEEEEEeccCCCccceEEEe--cccccee
Q psy9316 117 GDKTVRIWDART-QKSQ-----------------------IMLA-SGSFDKSVAIFALDKKGDLNKEVVYR--GHTGSVD 169 (264)
Q Consensus 117 ~dg~i~vwd~~~-~~~~-----------------------~~~~-~~~~d~~i~i~~~~~~~~~~~~~~~~--~h~~~i~ 169 (264)
.+|.+.+|+++. ++.. ..++ +...++.|.+|++...+......... .|.....
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999863 2210 0122 22235678888886323322211222 2345688
Q ss_pred eEEEcCCCCCEEEEEe-CCCcEEEEeCC--CCccee----E-eec------C-------ceEEEE-EcCCCCEEEEeeCC
Q psy9316 170 QLCWHATNPDLLSTAS-GDKTVRIWDAR--TQKSQI----I-ATK------G-------ENINIT-WAPNGNTIAVGNKE 227 (264)
Q Consensus 170 ~i~~~~~~~~~i~s~~-~dg~i~iwD~~--t~~~~~----~-~~~------~-------~~~~v~-~sp~g~~la~gs~d 227 (264)
.++|+|++. +++.++ .++.|.+|++. +++... . ..+ . .+..++ |+|||++|+++..+
T Consensus 197 ~~~~spdg~-~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 197 WVAMHPTGN-YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred EeEECCCCC-EEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 899999654 444444 57899999765 444211 1 111 1 366899 99999998777643
Q ss_pred -C-----eEEEEEcc
Q psy9316 228 -D-----LVTFIDVV 236 (264)
Q Consensus 228 -~-----~i~~~d~~ 236 (264)
+ .|.+|++.
T Consensus 276 ~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 276 NKFELQGYIAGFKLR 290 (365)
T ss_dssp SSTTSCCEEEEEEEC
T ss_pred CCCCCCCeEEEEEEC
Confidence 3 89999986
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-10 Score=107.73 Aligned_cols=211 Identities=11% Similarity=0.044 Sum_probs=127.5
Q ss_pred cCCCe-eEEEeecCceEEecccc----cccccccc-----CCCCEEEEEECCCCCeEEEEECC----------CcEEEEE
Q psy9316 20 PSGSQ-FHLVCKIDDYVKHFNTH----NDIKEYQA-----HGSKVHSVAWSCDGRRLASGSFD----------KSVAIFA 79 (264)
Q Consensus 20 ~~~~~-~~~~~~~d~~~~~~~~~----~~~~~~~~-----h~~~V~~l~~s~~g~~l~s~s~d----------g~i~v~~ 79 (264)
|.+.. +..+...+..++.++.. ...+.+.. |...+..++|+|||++|+.++.| ..|.+|+
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~ 167 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP 167 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence 45554 33232224556666654 44555555 66788999999999999998877 5788898
Q ss_pred eccCC--CCcccEEEe-cccccEEeEEEecCCCCeEEEEeCCC--------cEEEEECC-CCCcceEEEeecCCCcEEEE
Q psy9316 80 LDKKG--DLNKEVVYR-GHTGSVDQLCWHATNPDLLSTASGDK--------TVRIWDAR-TQKSQIMLASGSFDKSVAIF 147 (264)
Q Consensus 80 ~~~~~--~~~~~~~~~-~h~~~v~~i~~~~~~~~~l~s~s~dg--------~i~vwd~~-~~~~~~~~~~~~~d~~i~i~ 147 (264)
+.... .......+. .+...+..+.|+|++ +.|+.++.++ .|++||++ ++....
T Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~-------------- 232 (662)
T 3azo_A 168 LDGSAAADRSAVRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD-------------- 232 (662)
T ss_dssp TTSTTTTCGGGSEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE--------------
T ss_pred CCCCccccCCceeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccc--------------
Confidence 76410 001112233 455678888999966 5665555442 57777776 231000
Q ss_pred EeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCC--cEEEEeCCCCcceeEe-ecCc---------eEEEEEc
Q psy9316 148 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK--TVRIWDARTQKSQIIA-TKGE---------NINITWA 215 (264)
Q Consensus 148 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg--~i~iwD~~t~~~~~~~-~~~~---------~~~v~~s 215 (264)
.......|...+..+.|+|++. +++++..++ .|.+||+.+++..... .... +..++|+
T Consensus 233 ---------~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~ 302 (662)
T 3azo_A 233 ---------TRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPL 302 (662)
T ss_dssp ---------EEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEEC
T ss_pred ---------cEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEe
Confidence 0011223456788899999765 878888888 5666677665532211 1111 3468899
Q ss_pred CCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeeec
Q psy9316 216 PNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSLW 259 (264)
Q Consensus 216 p~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~~ 259 (264)
|+++++++++. +.+++|.+..... +..+..+|...+.++|
T Consensus 303 ~~~~~~~~~~~-~~~~l~~~d~~~~---~~~~l~~~~~~~~~~~ 342 (662)
T 3azo_A 303 ANGLIAVVHGK-GAAVLGILDPESG---ELVDAAGPWTEWAATL 342 (662)
T ss_dssp TTSCEEEEEBS-SSCEEEEEETTTT---EEEECCSSCCEEEEEE
T ss_pred CCCEEEEEEEc-CccEEEEEECCCC---cEEEecCCCCeEEEEE
Confidence 99999999998 9999995432111 1223445555666665
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-11 Score=114.49 Aligned_cols=138 Identities=15% Similarity=0.263 Sum_probs=93.3
Q ss_pred EEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccc---cEEeEEEecCCCCeEEEEeC---------CCcEEE
Q psy9316 56 SVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG---SVDQLCWHATNPDLLSTASG---------DKTVRI 123 (264)
Q Consensus 56 ~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~---~v~~i~~~~~~~~~l~s~s~---------dg~i~v 123 (264)
.++|+|+|+++++ +.|++|++|++... .. ...+..|.. .+..++|+|++ ++|+.++. |+.+++
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g-~~--~~~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETG-QS--YTILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSC-CE--EEEECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCC-cE--EEEEccccccccceeeEEECCCC-CeEEEEecCceeEEeecceEEEE
Confidence 6789999965554 57999999998642 22 223444433 38899999966 56666655 688999
Q ss_pred EECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE
Q psy9316 124 WDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII 203 (264)
Q Consensus 124 wd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~ 203 (264)
||+++++... . . .....+..++|+|++ ..|+.+. ++.|++||+.+++....
T Consensus 95 ~d~~~g~~~~------------------~---~------~l~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l 145 (719)
T 1z68_A 95 YDLSNGEFVR------------------G---N------ELPRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQI 145 (719)
T ss_dssp EETTTTEECC------------------S---S------CCCSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred EECCCCcccc------------------c---e------ecCcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEE
Confidence 9987654200 0 0 001357789999965 4556554 88999999988765322
Q ss_pred eecC---ce-----------------EEEEEcCCCCEEEEeeCC
Q psy9316 204 ATKG---EN-----------------INITWAPNGNTIAVGNKE 227 (264)
Q Consensus 204 ~~~~---~~-----------------~~v~~sp~g~~la~gs~d 227 (264)
...+ .+ .+++|||||++|++++.|
T Consensus 146 ~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d 189 (719)
T 1z68_A 146 TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN 189 (719)
T ss_dssp CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred ecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence 2111 11 379999999999999866
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.5e-09 Score=88.62 Aligned_cols=199 Identities=7% Similarity=0.021 Sum_probs=126.9
Q ss_pred eEEeccc--cccccccc-cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEE---------ecccccEEe
Q psy9316 34 YVKHFNT--HNDIKEYQ-AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY---------RGHTGSVDQ 101 (264)
Q Consensus 34 ~~~~~~~--~~~~~~~~-~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~---------~~h~~~v~~ 101 (264)
.+..++. .+.++.+. ++-.....++++|+|+.+++...++.|.+|+.+. .......+ ..+-.....
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g--~~~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHS--KEGPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp CEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTC--SSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred cEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCC--CeEEEEEecccCCCCCCccccCCCcE
Confidence 4666654 33333332 3345789999999999888888889999998642 21111222 234446889
Q ss_pred EEEecCCCCeEEEEe-CCCcEEEEECCCCCc-----------------------------ceEEEeecCCCcEEEEEecc
Q psy9316 102 LCWHATNPDLLSTAS-GDKTVRIWDARTQKS-----------------------------QIMLASGSFDKSVAIFALDK 151 (264)
Q Consensus 102 i~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~-----------------------------~~~~~~~~~d~~i~i~~~~~ 151 (264)
++++|.+++++++.+ .++.|++||.+.... ..++++...++.|.+|+...
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~ 227 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT 227 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence 999986667777776 699999999543210 11233444455666776542
Q ss_pred CCCccceEEEeccccceeeEEEcCCCCCEEEEE-------eCCCcEEEEeCCCCcceeEe-----ecCceEEEEEcCCCC
Q psy9316 152 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA-------SGDKTVRIWDARTQKSQIIA-----TKGENINITWAPNGN 219 (264)
Q Consensus 152 ~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~-------~~dg~i~iwD~~t~~~~~~~-----~~~~~~~v~~sp~g~ 219 (264)
+..........+...+..++++| +.++++. ..+..|++||..+++..... ....+..++++|+|+
T Consensus 228 -G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 228 -KEFVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT 304 (329)
T ss_dssp -CCEEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE
T ss_pred -CcEEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC
Confidence 22222111123445677888887 2233332 23458999999888753332 223478899999998
Q ss_pred EEEEeeCCCeEEEEEccc
Q psy9316 220 TIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 220 ~la~gs~d~~i~~~d~~~ 237 (264)
.+++...++.|++|++..
T Consensus 305 lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 305 VYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEESSSCCEEEEEEEE
T ss_pred EEEEECCCCEEEEEeCCc
Confidence 889999999999999864
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.7e-10 Score=96.49 Aligned_cols=215 Identities=13% Similarity=0.110 Sum_probs=119.6
Q ss_pred EeecCCCeeEEEeecCce--EEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEE
Q psy9316 17 KLLPSGSQFHLVCKIDDY--VKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY 92 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~--~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~ 92 (264)
.+.|.|..+......++. +..++. .+......++...+..+.|+|||++|+.++.++.|.+|++... .. ..++
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g-~~--~~~~ 118 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL-EE--NVVY 118 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC-CE--EEEE
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC-cc--eeee
Confidence 466667655444433663 555543 3333344455555556789999999999999999999998652 21 2234
Q ss_pred ecccccEEeEEE--ecCCCCeEEE----------------------EeCCCcEEEEECCCCCcceEE--------EeecC
Q psy9316 93 RGHTGSVDQLCW--HATNPDLLST----------------------ASGDKTVRIWDARTQKSQIML--------ASGSF 140 (264)
Q Consensus 93 ~~h~~~v~~i~~--~~~~~~~l~s----------------------~s~dg~i~vwd~~~~~~~~~~--------~~~~~ 140 (264)
..+...+....| ++++ .+++. ...+..|.+||+.+++...+. ..-+.
T Consensus 119 ~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp 197 (388)
T 3pe7_A 119 QVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRP 197 (388)
T ss_dssp ECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEET
T ss_pred echhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECC
Confidence 445444444444 5544 45542 224577999999876532211 01111
Q ss_pred -CCc--------------EEEEEeccCCCccceEEEeccc--cceeeEEEcCCCCCEEEEEeCCC----cEEEEeCCCCc
Q psy9316 141 -DKS--------------VAIFALDKKGDLNKEVVYRGHT--GSVDQLCWHATNPDLLSTASGDK----TVRIWDARTQK 199 (264)
Q Consensus 141 -d~~--------------i~i~~~~~~~~~~~~~~~~~h~--~~i~~i~~~~~~~~~i~s~~~dg----~i~iwD~~t~~ 199 (264)
|+. ..||.++..+.. ...+..+. ..+....|+|++..++.....++ .|++||+.+++
T Consensus 198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 198 YDDSTVAFCHEGPHDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE 275 (388)
T ss_dssp TEEEEEEEEECSCTTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred CCCCEEEEEEecCCCCCcceEEEEeCCCCc--eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence 222 122222221111 11122233 24777899997765544333322 39999999987
Q ss_pred ceeEe-ecCc------eEEEEEcCCCCEEEEe---------eCCCeEEEEEccc
Q psy9316 200 SQIIA-TKGE------NINITWAPNGNTIAVG---------NKEDLVTFIDVVK 237 (264)
Q Consensus 200 ~~~~~-~~~~------~~~v~~sp~g~~la~g---------s~d~~i~~~d~~~ 237 (264)
..... .... ...++|+|||+.|++. ..+..|++||+..
T Consensus 276 ~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 276 NRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp EEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred eEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 53322 2221 1124799999988865 4566899999875
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-08 Score=84.79 Aligned_cols=203 Identities=11% Similarity=0.140 Sum_probs=126.7
Q ss_pred eeEEEeecCceEEecccc-ccccccc------cCCCCEEEEEE-CCCCCeEEEEEC-CCcEEEEEeccCCCCcccEEEe-
Q psy9316 24 QFHLVCKIDDYVKHFNTH-NDIKEYQ------AHGSKVHSVAW-SCDGRRLASGSF-DKSVAIFALDKKGDLNKEVVYR- 93 (264)
Q Consensus 24 ~~~~~~~~d~~~~~~~~~-~~~~~~~------~h~~~V~~l~~-s~~g~~l~s~s~-dg~i~v~~~~~~~~~~~~~~~~- 93 (264)
.+.++...++.+..|+.. +.+..+. +|...+..+++ .++++.+++... ++.|.+|+.+ +... ..+.
T Consensus 42 ~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~--g~~~--~~~~~ 117 (286)
T 1q7f_A 42 DIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQFV--RKFGA 117 (286)
T ss_dssp CEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SCEE--EEECT
T ss_pred CEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC--CcEE--EEecC
Confidence 444455667778887653 3333332 24457899999 467766666533 7899999732 3221 1222
Q ss_pred cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc--------------------ceEEEeecCCCcEEEEEeccCC
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--------------------QIMLASGSFDKSVAIFALDKKG 153 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------------~~~~~~~~~d~~i~i~~~~~~~ 153 (264)
.+...+.++++++++ +++++...++.|.+||.+.... ..++++...++.|.+|+.. +
T Consensus 118 ~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~--g 194 (286)
T 1q7f_A 118 TILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--G 194 (286)
T ss_dssp TTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--C
T ss_pred ccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC--C
Confidence 234568899998855 6777767789999999653211 0123344445666677642 2
Q ss_pred CccceEEEe--ccccceeeEEEcCCCCCEEEEEeCCC-cEEEEeCCCCcceeEeec---CceEEEEEcCCCCEEEEeeCC
Q psy9316 154 DLNKEVVYR--GHTGSVDQLCWHATNPDLLSTASGDK-TVRIWDARTQKSQIIATK---GENINITWAPNGNTIAVGNKE 227 (264)
Q Consensus 154 ~~~~~~~~~--~h~~~i~~i~~~~~~~~~i~s~~~dg-~i~iwD~~t~~~~~~~~~---~~~~~v~~sp~g~~la~gs~d 227 (264)
... ..+. ++......+++++++ .++++...++ .|.+||............ ..+..++++|+|+.+++ +.|
T Consensus 195 ~~~--~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~ 270 (286)
T 1q7f_A 195 QYL--RQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKD 270 (286)
T ss_dssp CEE--EEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETT
T ss_pred CEE--EEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCC
Confidence 211 1222 223567889998854 6777777775 999999765433222222 23668999999987776 679
Q ss_pred CeEEEEEccc
Q psy9316 228 DLVTFIDVVK 237 (264)
Q Consensus 228 ~~i~~~d~~~ 237 (264)
+.|++|+...
T Consensus 271 ~~v~v~~~~~ 280 (286)
T 1q7f_A 271 YRLYIYRYVQ 280 (286)
T ss_dssp TEEEEEECSC
T ss_pred CeEEEEEccc
Confidence 9999999754
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.6e-09 Score=86.86 Aligned_cols=213 Identities=13% Similarity=0.153 Sum_probs=132.1
Q ss_pred EeecCCCeeEEEeecCceEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEE-Eec-
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV-YRG- 94 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~-~~~- 94 (264)
.+.|.+..+..+...++.+..|+.....+.+..+...+.+++++|+|+++++...++.|.+|+... +....... ...
T Consensus 34 ~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~ 112 (296)
T 3e5z_A 34 VYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG-GEWESIADSFEGK 112 (296)
T ss_dssp EEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT-CCEEEEECEETTE
T ss_pred eEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC-CcEEEEeeccCCC
Confidence 455666545556667778888876544667777888899999999999887776678899998643 32211100 011
Q ss_pred ccccEEeEEEecCCCCeEEE----Ee-------------CCCcEEEEECCCCCc------------------ceEEEeec
Q psy9316 95 HTGSVDQLCWHATNPDLLST----AS-------------GDKTVRIWDARTQKS------------------QIMLASGS 139 (264)
Q Consensus 95 h~~~v~~i~~~~~~~~~l~s----~s-------------~dg~i~vwd~~~~~~------------------~~~~~~~~ 139 (264)
....+.+++++|++ +++++ |+ ..+.|..+|.. ++. ...+++..
T Consensus 113 ~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~ 190 (296)
T 3e5z_A 113 KLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDT 190 (296)
T ss_dssp ECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEET
T ss_pred CCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeC
Confidence 12345678898855 56665 22 13456666654 221 01235556
Q ss_pred CCCcEEEEEeccCCCc-cceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecCceEEEEE-cCC
Q psy9316 140 FDKSVAIFALDKKGDL-NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITW-APN 217 (264)
Q Consensus 140 ~d~~i~i~~~~~~~~~-~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~-sp~ 217 (264)
.++.|.+|++...+.+ .....+..+......+++.+++ .++++. ++.|.+||...+..........+.+++| +|+
T Consensus 191 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~g~~~~~~~~~~~~~~~~f~~~d 267 (296)
T 3e5z_A 191 GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPDGDELGRVLTPQTTSNLCFGGPE 267 (296)
T ss_dssp TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTTSCEEEEEECSSCCCEEEEESTT
T ss_pred CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCCCCEEEEEECCCCceeEEEECCC
Confidence 6677888887644443 2222233344456788998865 566554 8899999997543333333333778999 689
Q ss_pred CCEEEEeeCCCeEEEEEcc
Q psy9316 218 GNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 218 g~~la~gs~d~~i~~~d~~ 236 (264)
++.|.+++.+++ .-++..
T Consensus 268 ~~~L~v~t~~~l-~~~~~~ 285 (296)
T 3e5z_A 268 GRTLYMTVSTEF-WSIETN 285 (296)
T ss_dssp SCEEEEEETTEE-EEEECS
T ss_pred CCEEEEEcCCeE-EEEEcc
Confidence 999999887644 444543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.5e-09 Score=93.40 Aligned_cols=147 Identities=13% Similarity=0.022 Sum_probs=105.5
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccCC--------CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEE
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKG--------DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~--------~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vw 124 (264)
.++.|++++...++++|+.++ +.+|+++... ........ .+.+ |+.++| ++.+|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 689999999999999999885 5569865311 11111222 3566 999999 44677776 88999999
Q ss_pred ECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe
Q psy9316 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA 204 (264)
Q Consensus 125 d~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~ 204 (264)
|+++..... ....|..++..+.+.+.+ ++.+..||.+.+||+.+.....
T Consensus 112 dv~sl~~~~--------------------------~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~-- 160 (388)
T 1xip_A 112 DLEELSEFR--------------------------TVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ-- 160 (388)
T ss_dssp ESSSTTCEE--------------------------EEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEE--
T ss_pred EchhhhccC--------------------------ccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcccc--
Confidence 998644211 112344556666666432 7778999999999999776432
Q ss_pred ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 205 TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 205 ~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
....+.+++|||+| +++|..||.+++|+.....
T Consensus 161 ~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 161 LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGE 193 (388)
T ss_dssp EEESEEEEEECSSE--EEEEETTSCEEEEEEETTE
T ss_pred ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcc
Confidence 33468899999999 7889999999999876433
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=4e-10 Score=106.56 Aligned_cols=201 Identities=13% Similarity=0.204 Sum_probs=116.3
Q ss_pred ceEEecccc-ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCccc-------EEEeccc--------
Q psy9316 33 DYVKHFNTH-NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE-------VVYRGHT-------- 96 (264)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~-------~~~~~h~-------- 96 (264)
+.+.+|+.. ..++.+..|.+.+...+|||||++|+.+ .|+.|.+|++.... .... .++.++.
T Consensus 92 ~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~-~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 92 ASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP-SYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC-CEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred eEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc-eEEEcCCCCccceecCcccccccchh
Confidence 344566553 2344566778889999999999999988 46899999875422 1110 0122222
Q ss_pred -ccEEeEEEecCCCCeEEEEeC-CCcEEEEECCCCCc-----c--eEE---EeecCCC--cEEEEEecc---CCCccceE
Q psy9316 97 -GSVDQLCWHATNPDLLSTASG-DKTVRIWDARTQKS-----Q--IML---ASGSFDK--SVAIFALDK---KGDLNKEV 159 (264)
Q Consensus 97 -~~v~~i~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~-----~--~~~---~~~~~d~--~i~i~~~~~---~~~~~~~~ 159 (264)
+....+.|+|++ +.|+.++. +..+++|++..... . ..+ ..|..+. .+.+|++.. .... ...
T Consensus 170 ~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~-~~~ 247 (740)
T 4a5s_A 170 FSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA-TSI 247 (740)
T ss_dssp SSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC-CEE
T ss_pred cCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc-eEE
Confidence 112348899976 45555554 55588887632110 0 011 1233333 355676654 3211 111
Q ss_pred EEe------ccccceeeEEEcCCCCCEEEEEe----CCCcEEEEeCCCCc-------ce-e--EeecCce-----EEEEE
Q psy9316 160 VYR------GHTGSVDQLCWHATNPDLLSTAS----GDKTVRIWDARTQK-------SQ-I--IATKGEN-----INITW 214 (264)
Q Consensus 160 ~~~------~h~~~i~~i~~~~~~~~~i~s~~----~dg~i~iwD~~t~~-------~~-~--~~~~~~~-----~~v~~ 214 (264)
.+. +|...+..+.|+|++ .+++... .+..|++||+.+++ .. + ..+...+ ..++|
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f 326 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF 326 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred EecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceE
Confidence 222 366778999999975 4444332 23479999999876 11 1 1122222 36889
Q ss_pred cCCCCEEE-EeeC-CC--eEEEEEcccC
Q psy9316 215 APNGNTIA-VGNK-ED--LVTFIDVVKS 238 (264)
Q Consensus 215 sp~g~~la-~gs~-d~--~i~~~d~~~~ 238 (264)
+|||+.++ ..+. +| .|++||+..+
T Consensus 327 spDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 327 TLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred cCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 99999887 6653 33 4888887643
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-09 Score=93.12 Aligned_cols=214 Identities=9% Similarity=0.059 Sum_probs=114.6
Q ss_pred eEeecCCCeeEEEeecCc--eEEeccccc-cccccccCCCC-EEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEE
Q psy9316 16 YKLLPSGSQFHLVCKIDD--YVKHFNTHN-DIKEYQAHGSK-VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~--~~~~~~~~~-~~~~~~~h~~~-V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~ 91 (264)
..+.|.|..+......++ .+..++... ....+..+... ...+.|+|||++|+.++.++.|.+|++.. +... .+
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-~~~~--~~ 117 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET-LEEQ--VI 117 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT-CCEE--EE
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCC-CCcE--EE
Confidence 356666765444433333 455544322 22233333333 33478999999999999999999998764 2211 22
Q ss_pred EecccccEEe-------------------EEEecCCCCeEEEE-----eCCCcEEEEECCCCCcceE-------------
Q psy9316 92 YRGHTGSVDQ-------------------LCWHATNPDLLSTA-----SGDKTVRIWDARTQKSQIM------------- 134 (264)
Q Consensus 92 ~~~h~~~v~~-------------------i~~~~~~~~~l~s~-----s~dg~i~vwd~~~~~~~~~------------- 134 (264)
...+...... +.|+|++. .++.. ..+..|++||+.+++....
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s 196 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR 196 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence 2223222211 23455432 22222 4567889999877543211
Q ss_pred ------EEeecCC------CcEEEEEeccCCCccceEEEecc--ccceeeEEEcCCCCCEEEEEeCC----CcEEEEeCC
Q psy9316 135 ------LASGSFD------KSVAIFALDKKGDLNKEVVYRGH--TGSVDQLCWHATNPDLLSTASGD----KTVRIWDAR 196 (264)
Q Consensus 135 ------~~~~~~d------~~i~i~~~~~~~~~~~~~~~~~h--~~~i~~i~~~~~~~~~i~s~~~d----g~i~iwD~~ 196 (264)
++..+.+ ..|.++++... .. ..+..+ ...+..+.|+|++..+++....+ +.|++||+.
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~~---~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 272 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGS-NV---RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE 272 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSC-CC---EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCC-ce---eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC
Confidence 1111111 12333333211 11 111122 12477789999765554443322 449999999
Q ss_pred CCcceeEeecCceEEEEEcC-CCCEEEEee----------------CCCeEEEEEcccC
Q psy9316 197 TQKSQIIATKGENINITWAP-NGNTIAVGN----------------KEDLVTFIDVVKS 238 (264)
Q Consensus 197 t~~~~~~~~~~~~~~v~~sp-~g~~la~gs----------------~d~~i~~~d~~~~ 238 (264)
+++........... +.|+| +|+++++++ .+..|++||+..+
T Consensus 273 ~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 273 TLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp TCCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred CCCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 87653332222222 89999 999888765 3478999998654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=8.8e-09 Score=85.48 Aligned_cols=181 Identities=12% Similarity=0.185 Sum_probs=115.9
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe------cccccEEeEEEecCCCCeEEEEeC-CCcE
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR------GHTGSVDQLCWHATNPDLLSTASG-DKTV 121 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~------~h~~~v~~i~~~~~~~~~l~s~s~-dg~i 121 (264)
++-..+.+++++++++++++...++.|.+|+.+ +... ..+. .+...+..+++.+.+++++++... ++.|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~--g~~~--~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT--SCEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC--CcEE--EEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence 455678999999999988888889999999854 2211 1121 244567888885445455555433 8899
Q ss_pred EEEECCCCCc-------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEE
Q psy9316 122 RIWDARTQKS-------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 182 (264)
Q Consensus 122 ~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~ 182 (264)
++||.+.... ..++++...++.|.+|+. .+..........+......++++|+ +.+++
T Consensus 103 ~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~p~~i~~~~~-g~l~v 179 (286)
T 1q7f_A 103 QIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ--NGNVLHKFGCSKHLEFPNGVVVNDK-QEIFI 179 (286)
T ss_dssp EEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT--TSCEEEEEECTTTCSSEEEEEECSS-SEEEE
T ss_pred EEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC--CCCEEEEeCCCCccCCcEEEEECCC-CCEEE
Confidence 9998543210 012333334455666653 2222111111134456788999885 45777
Q ss_pred EEeCCCcEEEEeCCCCcceeEeec---CceEEEEEcCCCCEEEEeeCCC-eEEEEEcc
Q psy9316 183 TASGDKTVRIWDARTQKSQIIATK---GENINITWAPNGNTIAVGNKED-LVTFIDVV 236 (264)
Q Consensus 183 s~~~dg~i~iwD~~t~~~~~~~~~---~~~~~v~~sp~g~~la~gs~d~-~i~~~d~~ 236 (264)
+...++.|++||............ ..+..++++|+|+++++...++ .|.+||..
T Consensus 180 ~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp EEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred EECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 777899999999865433222222 3577899999999988888786 99999954
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.12 E-value=5e-09 Score=91.49 Aligned_cols=135 Identities=14% Similarity=0.103 Sum_probs=100.3
Q ss_pred cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCC
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~ 128 (264)
.+.+ |..|+| |+++|+++ .++.|++||+..... ......|...+.++.+.+. + +++++.||.+.+||++.
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~---~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~ 155 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSE---FRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRT 155 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTC---EEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTT
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhc---cCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccC
Confidence 4566 999999 99999998 889999999875332 2234566777887776542 2 77789999999999975
Q ss_pred CCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc--eeEe--
Q psy9316 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--QIIA-- 204 (264)
Q Consensus 129 ~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~--~~~~-- 204 (264)
+... .+...|.+++|+|.+ ++.|..||.+++|+...++. +...
T Consensus 156 ~~~~------------------------------~~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~ 202 (388)
T 1xip_A 156 KSTK------------------------------QLAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSL 202 (388)
T ss_dssp CCEE------------------------------EEEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred Cccc------------------------------cccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecC
Confidence 4321 123479999999965 56789999999999988763 2211
Q ss_pred ---------ecCceEEEEEcCCCCEEEEeeC
Q psy9316 205 ---------TKGENINITWAPNGNTIAVGNK 226 (264)
Q Consensus 205 ---------~~~~~~~v~~sp~g~~la~gs~ 226 (264)
+...+.+|.|.+++.++++-..
T Consensus 203 Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 203 PSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp CHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred CcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 2345889999999999987543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-09 Score=92.02 Aligned_cols=176 Identities=10% Similarity=0.099 Sum_probs=105.9
Q ss_pred EEEEEECCCCCeEEEEECC-C--cEEEEEeccCCCCcccEEEecccccE-EeEEEecCCCCeEEEEeCCCcEEEEECCCC
Q psy9316 54 VHSVAWSCDGRRLASGSFD-K--SVAIFALDKKGDLNKEVVYRGHTGSV-DQLCWHATNPDLLSTASGDKTVRIWDARTQ 129 (264)
Q Consensus 54 V~~l~~s~~g~~l~s~s~d-g--~i~v~~~~~~~~~~~~~~~~~h~~~v-~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~ 129 (264)
+..++|+|||++|+.+..+ + .|.+|++.. +.. ..+..+.... ..+.|+|++ +.|+.++.++.+++||+.++
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~-~~~---~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~~ 112 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET-QQA---VQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLETL 112 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTT-TEE---EECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTTC
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCC-CcE---EEeecCCCCccccceECCCC-CEEEEEEcCCcEEEEECCCC
Confidence 6778899999998877543 3 566666543 211 1122222232 236799865 67777888889999999876
Q ss_pred CcceEEE-------------ee------------------------------cCCCcEEEEEeccCCCccceEEEecccc
Q psy9316 130 KSQIMLA-------------SG------------------------------SFDKSVAIFALDKKGDLNKEVVYRGHTG 166 (264)
Q Consensus 130 ~~~~~~~-------------~~------------------------------~~d~~i~i~~~~~~~~~~~~~~~~~h~~ 166 (264)
+...+.. .. ..+..|.+|++... .. .....+..
T Consensus 113 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g-~~---~~~~~~~~ 188 (396)
T 3c5m_A 113 EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG-EL---EVIHQDTA 188 (396)
T ss_dssp CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC-CE---EEEEEESS
T ss_pred CcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC-cE---EeeccCCc
Confidence 5322111 00 12223455554321 11 12224556
Q ss_pred ceeeEEEcCCCCCEEEEEeCC------CcEEEEeCCCCcceeEeec--C-ceEEEEEcCCCCEEEEeeCC-----CeEEE
Q psy9316 167 SVDQLCWHATNPDLLSTASGD------KTVRIWDARTQKSQIIATK--G-ENINITWAPNGNTIAVGNKE-----DLVTF 232 (264)
Q Consensus 167 ~i~~i~~~~~~~~~i~s~~~d------g~i~iwD~~t~~~~~~~~~--~-~~~~v~~sp~g~~la~gs~d-----~~i~~ 232 (264)
.+..+.|+|.++..|+..+.+ ..|.+||+.++........ . .+..++|+|+|++|+.++.+ +.|++
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 788899998434444444433 4688999877653222221 2 35678999999988877654 45999
Q ss_pred EEcccC
Q psy9316 233 IDVVKS 238 (264)
Q Consensus 233 ~d~~~~ 238 (264)
||+..+
T Consensus 269 ~d~~~g 274 (396)
T 3c5m_A 269 ANPETL 274 (396)
T ss_dssp ECTTTC
T ss_pred EECCCC
Confidence 998654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.3e-08 Score=81.27 Aligned_cols=182 Identities=11% Similarity=0.068 Sum_probs=118.7
Q ss_pred cccccccCCCCEEEEEECCCCC-eEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcE
Q psy9316 43 DIKEYQAHGSKVHSVAWSCDGR-RLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 121 (264)
Q Consensus 43 ~~~~~~~h~~~V~~l~~s~~g~-~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i 121 (264)
.++.+..+.....++.|+|+++ .++++..++.|..|+.... ...+..+...+.++++++++ +++++...++.|
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i 92 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRL 92 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-----EEEEESSCSSEEEEEECTTC-CEEEEETTTTEE
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-----eEEEECCCCCcceeeECCCC-cEEEEecCCCeE
Confidence 3444555566788999999998 6777778899999987532 23355567778999999855 566666667899
Q ss_pred EEEECCCCCcceEE-------------EeecCCCcEE-------------------------EEEeccCCCccceEEEec
Q psy9316 122 RIWDARTQKSQIML-------------ASGSFDKSVA-------------------------IFALDKKGDLNKEVVYRG 163 (264)
Q Consensus 122 ~vwd~~~~~~~~~~-------------~~~~~d~~i~-------------------------i~~~~~~~~~~~~~~~~~ 163 (264)
.+||.++++...+. +..+.+|.+. ||.++..+. ......
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~---~~~~~~ 169 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT---LSAPIR 169 (296)
T ss_dssp EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC---EEEEEC
T ss_pred EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC---EEEeec
Confidence 99998665432110 1112334332 333333222 122334
Q ss_pred cccceeeEEEcCCCCCEEEEEeCCCcEEEEeCC-CCcc---eeEe--ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR-TQKS---QIIA--TKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 164 h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~-t~~~---~~~~--~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
+....+.++|+|++. .+++.+.++.|.+||+. ++.. .... ..+.+..++++++|+++++. ++.|.+||..
T Consensus 170 ~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 170 DRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred CCCCCccEEECCCCC-EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 445668899998654 44788888999999987 3332 1111 12345679999999977666 8889999975
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-08 Score=83.55 Aligned_cols=176 Identities=10% Similarity=0.113 Sum_probs=113.9
Q ss_pred CceEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCe
Q psy9316 32 DDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDL 111 (264)
Q Consensus 32 d~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 111 (264)
++.++.| ..+....+..+...+.+++|+++|++++++..++.|.+|+... +... .....+...+.++++++++ ++
T Consensus 26 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~--~~~~~~~~~~~~i~~~~dg-~l 100 (333)
T 2dg1_A 26 ESELQTI-TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIK--RPFVSHKANPAAIKIHKDG-RL 100 (333)
T ss_dssp GGGSCEE-ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEE--EEEECSSSSEEEEEECTTS-CE
T ss_pred cccCccc-ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEE--EEeeCCCCCcceEEECCCC-cE
Confidence 4455555 3344455666777789999999999877888889999998653 2221 1122456779999999865 56
Q ss_pred EEEEeCC----CcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeC-
Q psy9316 112 LSTASGD----KTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG- 186 (264)
Q Consensus 112 l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~- 186 (264)
+++...+ +.|.+||.+++.....+ .. ..+...+..+.++|++ .++++...
T Consensus 101 ~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~-----------------------~~~~~~~~~i~~d~~g-~l~v~~~~~ 155 (333)
T 2dg1_A 101 FVCYLGDFKSTGGIFAATENGDNLQDII-ED-----------------------LSTAYCIDDMVFDSKG-GFYFTDFRG 155 (333)
T ss_dssp EEEECTTSSSCCEEEEECTTSCSCEEEE-CS-----------------------SSSCCCEEEEEECTTS-CEEEEECCC
T ss_pred EEEeCCCCCCCceEEEEeCCCCEEEEEE-cc-----------------------CccCCcccceEECCCC-CEEEEeccc
Confidence 6655555 68889998765432111 00 0122357788898854 56665443
Q ss_pred -----CCcEEEEeCCCCcceeE-eecCceEEEEEcCCCCEEE-EeeCCCeEEEEEccc
Q psy9316 187 -----DKTVRIWDARTQKSQII-ATKGENINITWAPNGNTIA-VGNKEDLVTFIDVVK 237 (264)
Q Consensus 187 -----dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la-~gs~d~~i~~~d~~~ 237 (264)
.+.|..+|..+++.... .....+..++|+|+|+.|. +.+.++.|++||+.+
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 35677777766543222 2234567899999998664 445678999999863
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.05 E-value=9e-08 Score=78.37 Aligned_cols=200 Identities=10% Similarity=0.042 Sum_probs=122.2
Q ss_pred ecCceEEeccccccccc-c-ccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe-cccccEEeEEEec
Q psy9316 30 KIDDYVKHFNTHNDIKE-Y-QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR-GHTGSVDQLCWHA 106 (264)
Q Consensus 30 ~~d~~~~~~~~~~~~~~-~-~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~ 106 (264)
..++.+..++....... + ..+...+.+++++++|+.+++.. ++.|.+|+.+.. .. ..+. .....+.++++++
T Consensus 43 ~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~--~~--~~~~~~~~~~p~~i~~~~ 117 (270)
T 1rwi_B 43 GMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN--NQ--TVLPFDGLNYPEGLAVDT 117 (270)
T ss_dssp SSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS--CC--EECCCCSCSSEEEEEECT
T ss_pred CCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc--eE--eeeecCCcCCCcceEECC
Confidence 55667777765433222 2 12334678999999999655554 888999976432 11 1121 2235678899988
Q ss_pred CCCCeEEEEeCCCcEEEEECCCCCcc-------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccc
Q psy9316 107 TNPDLLSTASGDKTVRIWDARTQKSQ-------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167 (264)
Q Consensus 107 ~~~~~l~s~s~dg~i~vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~ 167 (264)
++ +++++...++.|.+||..+.... .++++...++.|.+|+.... ... .....+...
T Consensus 118 ~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~--~~~-~~~~~~~~~ 193 (270)
T 1rwi_B 118 QG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN--NQV-VLPFTDITA 193 (270)
T ss_dssp TC-CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC--CEE-ECCCSSCCS
T ss_pred CC-CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC--ceE-eecccCCCC
Confidence 55 56666667889999976543211 12222223344444543221 110 011122245
Q ss_pred eeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee--cCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT--KGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 168 i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~--~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
...+++.+++ .++++...++.|.+||..+........ ...+.+++++|+|+.+++...++.|.+++...+.
T Consensus 194 p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 194 PWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ceEEEECCCC-CEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 7789998864 777777778999999998765432222 2357889999999988999999999999976543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.04 E-value=5.2e-07 Score=76.24 Aligned_cols=213 Identities=14% Similarity=0.205 Sum_probs=125.4
Q ss_pred EeecCCCeeEEEeecCceEEeccccc-cccccc-cCCCCEEEEEECCCCCeEEEEECC----CcEEEEEeccCCCCcccE
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHN-DIKEYQ-AHGSKVHSVAWSCDGRRLASGSFD----KSVAIFALDKKGDLNKEV 90 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~-~h~~~V~~l~~s~~g~~l~s~s~d----g~i~v~~~~~~~~~~~~~ 90 (264)
.+-|.+ .+.++...++.+..|+... .++.+. .+...+.+++++|+|+++++...+ +.|.+|+.+.. ... .
T Consensus 51 ~~~~~g-~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~-~~~--~ 126 (333)
T 2dg1_A 51 NFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD-NLQ--D 126 (333)
T ss_dssp EECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC-SCE--E
T ss_pred EECCCC-CEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC-EEE--E
Confidence 344444 3444556677777776532 233332 566789999999999988776665 57888876532 221 1
Q ss_pred EEe--cccccEEeEEEecCCCCeEEEEeC------CCcEEEEECCCCCcc-------------------eEEEeecCCCc
Q psy9316 91 VYR--GHTGSVDQLCWHATNPDLLSTASG------DKTVRIWDARTQKSQ-------------------IMLASGSFDKS 143 (264)
Q Consensus 91 ~~~--~h~~~v~~i~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~-------------------~~~~~~~~d~~ 143 (264)
.+. .+...+.++.++|++ +++++... .+.|..+|.++++.. .++++...++.
T Consensus 127 ~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~ 205 (333)
T 2dg1_A 127 IIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR 205 (333)
T ss_dssp EECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred EEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCe
Confidence 121 234568899999865 55555443 355666666543211 12233344566
Q ss_pred EEEEEeccCCCccce---E---EEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecC-------ceE
Q psy9316 144 VAIFALDKKGDLNKE---V---VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKG-------ENI 210 (264)
Q Consensus 144 i~i~~~~~~~~~~~~---~---~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~-------~~~ 210 (264)
|.+|+.+..+..... . .+.++ .....++++++ +.++++...++.|.+||...+......... .+.
T Consensus 206 i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~-G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~ 283 (333)
T 2dg1_A 206 LHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSD-DNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRST 283 (333)
T ss_dssp EEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTT-CCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCC
T ss_pred EEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCC-CCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcc
Confidence 777777543322110 0 11112 35677889875 467777777899999998644332222222 467
Q ss_pred EEEEcCCCCEEEEeeCCC------eEEEEEcc
Q psy9316 211 NITWAPNGNTIAVGNKED------LVTFIDVV 236 (264)
Q Consensus 211 ~v~~sp~g~~la~gs~d~------~i~~~d~~ 236 (264)
+++|+|+++.|.+++.++ .+.-+++.
T Consensus 284 ~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 284 HPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred eEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 899999988887666553 45555654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6.9e-09 Score=96.33 Aligned_cols=172 Identities=8% Similarity=-0.001 Sum_probs=105.1
Q ss_pred CceEEecc--ccccccccccCCCCEE---------EEEEC--CCCCe-EEEEECCCcEEEEEeccC----CCCcccEEEe
Q psy9316 32 DDYVKHFN--THNDIKEYQAHGSKVH---------SVAWS--CDGRR-LASGSFDKSVAIFALDKK----GDLNKEVVYR 93 (264)
Q Consensus 32 d~~~~~~~--~~~~~~~~~~h~~~V~---------~l~~s--~~g~~-l~s~s~dg~i~v~~~~~~----~~~~~~~~~~ 93 (264)
++...+|. .....+.+..|...+. ...|+ |||++ |+.++. ....+|.++.. +.. ..+.
T Consensus 46 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~-~~~~l~~~~~~~~g~~~~---~~l~ 121 (662)
T 3azo_A 46 AGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF-GDQRLYAFEPDAPGGAVP---RPLT 121 (662)
T ss_dssp TTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT-TTCCEEEECTTSTTCCCC---EECS
T ss_pred CCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC-CCCeEEEEcCCCCCCCCC---Eecc
Confidence 55555554 2334455666665555 55565 99998 776554 24445544433 221 2233
Q ss_pred c-----ccccEEeEEEecCCCCeEEEEeCC----------CcEEEEECCC------CCcceEEEeecCCCcEEEEEeccC
Q psy9316 94 G-----HTGSVDQLCWHATNPDLLSTASGD----------KTVRIWDART------QKSQIMLASGSFDKSVAIFALDKK 152 (264)
Q Consensus 94 ~-----h~~~v~~i~~~~~~~~~l~s~s~d----------g~i~vwd~~~------~~~~~~~~~~~~d~~i~i~~~~~~ 152 (264)
. |...+..++|+|++ +.|+.++.| ..|++||+.+ ++.
T Consensus 122 ~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--------------------- 179 (662)
T 3azo_A 122 PVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV--------------------- 179 (662)
T ss_dssp CCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS---------------------
T ss_pred CCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce---------------------
Confidence 3 56778899999966 566666655 4677777765 221
Q ss_pred CCccceEEEe-ccccceeeEEEcCCCCCEEEEEeCC--------CcEEEEeCC-CC---cceeEe-e-cCceEEEEEcCC
Q psy9316 153 GDLNKEVVYR-GHTGSVDQLCWHATNPDLLSTASGD--------KTVRIWDAR-TQ---KSQIIA-T-KGENINITWAPN 217 (264)
Q Consensus 153 ~~~~~~~~~~-~h~~~i~~i~~~~~~~~~i~s~~~d--------g~i~iwD~~-t~---~~~~~~-~-~~~~~~v~~sp~ 217 (264)
..+. .+...+..+.|+|++ ..|+.++.+ ..|++||+. ++ +..... . ...+..++|+||
T Consensus 180 ------~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd 252 (662)
T 3azo_A 180 ------RELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD 252 (662)
T ss_dssp ------EESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT
T ss_pred ------eEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC
Confidence 1112 233466778999865 566655544 479999998 55 322222 2 356778999999
Q ss_pred CCEEEEeeCCC--eEEEEEcc
Q psy9316 218 GNTIAVGNKED--LVTFIDVV 236 (264)
Q Consensus 218 g~~la~gs~d~--~i~~~d~~ 236 (264)
|++++++..++ .|++||+.
T Consensus 253 g~l~~~~~~~~~~~l~~~~~~ 273 (662)
T 3azo_A 253 GSLIVATDRTGWWNLHRVDPA 273 (662)
T ss_dssp SCEEEEECTTSSCEEEEECTT
T ss_pred CeEEEEECCCCCeEEEEEECC
Confidence 99778888788 56666653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.8e-08 Score=93.26 Aligned_cols=217 Identities=10% Similarity=-0.037 Sum_probs=121.2
Q ss_pred EeecCCCeeEEEee----cCceEEeccccccccccccCCCCE--EEEEECCCCCeEEEEECCCc-------------EEE
Q psy9316 17 KLLPSGSQFHLVCK----IDDYVKHFNTHNDIKEYQAHGSKV--HSVAWSCDGRRLASGSFDKS-------------VAI 77 (264)
Q Consensus 17 ~~~~~~~~~~~~~~----~d~~~~~~~~~~~~~~~~~h~~~V--~~l~~s~~g~~l~s~s~dg~-------------i~v 77 (264)
.+.|.|..+..+.. .+..|++++..........+-..+ ..++|+|||+.|+.++.|.. |.+
T Consensus 127 ~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~ 206 (695)
T 2bkl_A 127 AVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRY 206 (695)
T ss_dssp EECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEE
T ss_pred EECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEE
Confidence 45555554443322 234677776533211101122222 67899999999999998876 999
Q ss_pred EEeccCCCCcccEEEe--cccccEEeEEEecCCCCeEEEEeCCC----cEEEEECCCCCcce-----------------E
Q psy9316 78 FALDKKGDLNKEVVYR--GHTGSVDQLCWHATNPDLLSTASGDK----TVRIWDARTQKSQI-----------------M 134 (264)
Q Consensus 78 ~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~l~s~s~dg----~i~vwd~~~~~~~~-----------------~ 134 (264)
|++.... .....++. .|...+..+.|+|++. +++.++.++ .+.+||..+++... +
T Consensus 207 ~~l~t~~-~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~g~l 284 (695)
T 2bkl_A 207 HTLGTEP-SKDTVVHERTGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHAWKDRF 284 (695)
T ss_dssp EETTSCG-GGCEEEECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEEETTEE
T ss_pred EECCCCc-hhceEEEecCCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEecCCcE
Confidence 9986532 11223333 3445788999999775 444445444 56667654432111 1
Q ss_pred EEeec---CCCcEEEEEeccCCCccceEEEecc--ccceeeEEEcCCCCCEEEEEeCCCcEEEEeCC--CCcceeEee--
Q psy9316 135 LASGS---FDKSVAIFALDKKGDLNKEVVYRGH--TGSVDQLCWHATNPDLLSTASGDKTVRIWDAR--TQKSQIIAT-- 205 (264)
Q Consensus 135 ~~~~~---~d~~i~i~~~~~~~~~~~~~~~~~h--~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~--t~~~~~~~~-- 205 (264)
++... .++.|.+|++.... ......+..+ ...+..+.|+ ++.++++...|+..+||.+. .+.......
T Consensus 285 ~~~s~~~~~~~~l~~~d~~~~~-~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~ 361 (695)
T 2bkl_A 285 YVLTDEGAPRQRVFEVDPAKPA-RASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPG 361 (695)
T ss_dssp EEEECTTCTTCEEEEEBTTBCS-GGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSS
T ss_pred EEEECCCCCCCEEEEEeCCCCC-ccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCC
Confidence 11121 12445555543221 1001122222 3457778886 45688888999998888554 322221222
Q ss_pred cCceEEEEEcCCCCEEEEee----CCCeEEEEEcccC
Q psy9316 206 KGENINITWAPNGNTIAVGN----KEDLVTFIDVVKS 238 (264)
Q Consensus 206 ~~~~~~v~~sp~g~~la~gs----~d~~i~~~d~~~~ 238 (264)
.+.+..++++|+++.++... ..+.+++||+.++
T Consensus 362 ~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 362 VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 23455678899998777443 3467999998653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-07 Score=80.78 Aligned_cols=167 Identities=7% Similarity=0.063 Sum_probs=110.1
Q ss_pred CCCEEEEEECCCCCeEEEEECC------------------------CcEEEEEeccCCCCcccEEEe-cccccEEeEEEe
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFD------------------------KSVAIFALDKKGDLNKEVVYR-GHTGSVDQLCWH 105 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~d------------------------g~i~v~~~~~~~~~~~~~~~~-~h~~~v~~i~~~ 105 (264)
-+.+.+++++|+|+++++...+ +.|.+||... +... ..+. .+-.....++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-g~~~--~~~~~~~~~~p~gia~d 99 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-AEIL--QSSGKNLFYLPHGLSID 99 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-CCEE--EEECTTTCSSEEEEEEC
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-CeEE--eccCCCccCCceEEEEC
Confidence 3679999999999999888777 4688887643 3221 1121 344568899999
Q ss_pred cCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEe
Q psy9316 106 ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS 185 (264)
Q Consensus 106 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~ 185 (264)
+++ +++++.+.++.|++||.+....... ..+... ..+. -..+......++++|.++.++++.+
T Consensus 100 ~~g-~l~v~d~~~~~v~~~~~~g~~~~~~-~~~~~~---------~~g~------~~~~~~~P~~ia~~~~~g~lyv~d~ 162 (329)
T 3fvz_A 100 TDG-NYWVTDVALHQVFKLDPHSKEGPLL-ILGRSM---------QPGS------DQNHFCQPTDVAVEPSTGAVFVSDG 162 (329)
T ss_dssp TTS-CEEEEETTTTEEEEECTTCSSCCSE-EESBTT---------BCCC------STTCCSSEEEEEECTTTCCEEEEEC
T ss_pred CCC-CEEEEECCCCEEEEEeCCCCeEEEE-EecccC---------CCCC------CccccCCCcEEEEeCCCCeEEEEeC
Confidence 855 5777778899999999864321111 111000 0000 0123345678999986667888876
Q ss_pred -CCCcEEEEeCCCCcceeEeec-----------CceEEEEEcCC-CCEEEEeeCCCeEEEEEccc
Q psy9316 186 -GDKTVRIWDARTQKSQIIATK-----------GENINITWAPN-GNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 186 -~dg~i~iwD~~t~~~~~~~~~-----------~~~~~v~~sp~-g~~la~gs~d~~i~~~d~~~ 237 (264)
.++.|++||............ ..+..++++|+ |+.+++...++.|++||..+
T Consensus 163 ~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~ 227 (329)
T 3fvz_A 163 YCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT 227 (329)
T ss_dssp SSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred CCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence 699999999554332222111 23678999998 78888888999999999873
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.8e-07 Score=86.58 Aligned_cols=218 Identities=9% Similarity=0.047 Sum_probs=125.6
Q ss_pred EeecCCCeeEEEeecCc----eEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCc----------------
Q psy9316 17 KLLPSGSQFHLVCKIDD----YVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKS---------------- 74 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~----~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~---------------- 74 (264)
.+.|.|..+.......| .+++++.. +..... .....+..++|+|||+.|+.++.++.
T Consensus 131 ~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (710)
T 2xdw_A 131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK 209 (710)
T ss_dssp EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-ccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCE
Confidence 45566654433322222 56766543 222211 12223567999999999999988776
Q ss_pred EEEEEeccCCCCcccEEEec--ccccEEeEEEecCCCCeEEEEeC-----CCcEEEEECCC------CC--cce------
Q psy9316 75 VAIFALDKKGDLNKEVVYRG--HTGSVDQLCWHATNPDLLSTASG-----DKTVRIWDART------QK--SQI------ 133 (264)
Q Consensus 75 i~v~~~~~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~l~s~s~-----dg~i~vwd~~~------~~--~~~------ 133 (264)
|.+|++.... .....++.. |...+..+.|+|++. +++.++. +..+++||+.+ +. ...
T Consensus 210 v~~~~l~t~~-~~~~~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~ 287 (710)
T 2xdw_A 210 LYYHVLGTDQ-SEDILCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE 287 (710)
T ss_dssp EEEEETTSCG-GGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS
T ss_pred EEEEECCCCc-ccceEEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC
Confidence 9999886432 121233333 445578899999765 4444443 56899999975 32 110
Q ss_pred ------------EEEeecCC---CcEEEEEeccCCCccceEEEecccc--ceeeEEEcCCCCCEEEEEeCCCc--EEEEe
Q psy9316 134 ------------MLASGSFD---KSVAIFALDKKGDLNKEVVYRGHTG--SVDQLCWHATNPDLLSTASGDKT--VRIWD 194 (264)
Q Consensus 134 ------------~~~~~~~d---~~i~i~~~~~~~~~~~~~~~~~h~~--~i~~i~~~~~~~~~i~s~~~dg~--i~iwD 194 (264)
+++....+ ..|.++++.... ......+..|.. .+..+.|++ ++.++++...|+. |.+||
T Consensus 288 ~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~ 365 (710)
T 2xdw_A 288 GEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPE-ESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHD 365 (710)
T ss_dssp SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCC-GGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEE
T ss_pred cEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC-cccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEE
Confidence 11222212 235555543321 101123334433 577888874 4567888888885 55668
Q ss_pred CCCCcc-e-eEeecCceEEEEEcCCCCEEEEee----CCCeEEEEEcccCC
Q psy9316 195 ARTQKS-Q-IIATKGENINITWAPNGNTIAVGN----KEDLVTFIDVVKSL 239 (264)
Q Consensus 195 ~~t~~~-~-~~~~~~~~~~v~~sp~g~~la~gs----~d~~i~~~d~~~~~ 239 (264)
+.++.. . +....+.+..++++|+++.++... ..+.++.||+.++.
T Consensus 366 ~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 366 LATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 755543 2 222344567788999998776443 34689999987644
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-06 Score=75.21 Aligned_cols=224 Identities=14% Similarity=0.122 Sum_probs=127.2
Q ss_pred ecCCCCCceEeecCCCeeEEEee---------cCceEEeccccc--cccccccC-------CCCEEEEEECCCCCeEEEE
Q psy9316 8 FHTPKSPEYKLLPSGSQFHLVCK---------IDDYVKHFNTHN--DIKEYQAH-------GSKVHSVAWSCDGRRLASG 69 (264)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~---------~d~~~~~~~~~~--~~~~~~~h-------~~~V~~l~~s~~g~~l~s~ 69 (264)
+...+.|...+.|.+..+..... .++.+..++..+ .+.++..- ......+.|+|||++|+.+
T Consensus 63 i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~ 142 (373)
T 2mad_H 63 VNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFF 142 (373)
T ss_pred ecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEE
Confidence 33444566677777765443321 255666665532 22222111 1234578999999999998
Q ss_pred EC--CCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEE------------
Q psy9316 70 SF--DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIML------------ 135 (264)
Q Consensus 70 s~--dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~------------ 135 (264)
.. ++.|.++| ... ..... .+. .. .++.+.|.+.+.+++.+.||.+.++|. +++.....
T Consensus 143 n~~~~~~v~viD-~t~-~~~~~-~i~-~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~ 214 (373)
T 2mad_H 143 QFAAGPAVGLVV-QGG-SSDDQ-LLS-SP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNL 214 (373)
T ss_pred ecCCCCeEEEEE-CCC-CEEeE-EcC-CC---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcce
Confidence 75 47899998 643 22111 011 11 123445666667777888999999998 54432100
Q ss_pred -------------EeecCCCcEEEEEeccCCCccceEEEe--c--------cccceeeEEEcCCCCCEEEEEe-------
Q psy9316 136 -------------ASGSFDKSVAIFALDKKGDLNKEVVYR--G--------HTGSVDQLCWHATNPDLLSTAS------- 185 (264)
Q Consensus 136 -------------~~~~~d~~i~i~~~~~~~~~~~~~~~~--~--------h~~~i~~i~~~~~~~~~i~s~~------- 185 (264)
+..+..+.+.+.|+....... ...+. . ...+...+.++|++..++++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v-~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~ 293 (373)
T 2mad_H 215 LTQPAQANKSGRIVWPVYSGKILQADISAAGATN-KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL 293 (373)
T ss_pred eecceeEecCCEEEEEcCCceEEEEeccCCcceE-eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccc
Confidence 011123444555543211000 00010 0 0122344678886665555443
Q ss_pred --CCCcEEEEeCCCCccee-EeecCceEEEEEcCCCC-EEEEee-CCCeEEEEEcccCCC
Q psy9316 186 --GDKTVRIWDARTQKSQI-IATKGENINITWAPNGN-TIAVGN-KEDLVTFIDVVKSLP 240 (264)
Q Consensus 186 --~dg~i~iwD~~t~~~~~-~~~~~~~~~v~~sp~g~-~la~gs-~d~~i~~~d~~~~~~ 240 (264)
.++.|.++|+.+.+... .........++|+|||+ .++++. .++.|.+||+.+...
T Consensus 294 ~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 294 HAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred cCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 24689999999987533 33344578999999999 666666 589999999876443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.6e-07 Score=82.08 Aligned_cols=193 Identities=11% Similarity=0.046 Sum_probs=124.3
Q ss_pred eEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEec-cCCCCcccEEEecccccEEe
Q psy9316 25 FHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALD-KKGDLNKEVVYRGHTGSVDQ 101 (264)
Q Consensus 25 ~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~-~~~~~~~~~~~~~h~~~v~~ 101 (264)
+.++...++.+..++.. +.+.++. ....+..+.|+|||+++++++.|+.|.+||+. ..... ...+.. ......
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~--v~~i~~-G~~P~~ 244 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT--VAEIKI-GSEARS 244 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--EEEEEC-CSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE--eEEEec-CCCCce
Confidence 33455667888887653 3444553 33457799999999999999999999999984 11221 122222 223568
Q ss_pred EEEe----cCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEecccc-ceeeEEEcCC
Q psy9316 102 LCWH----ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG-SVDQLCWHAT 176 (264)
Q Consensus 102 i~~~----~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~-~i~~i~~~~~ 176 (264)
+.|+ |++..++++...++.+.++|..+.+....+.++.... ++. ..|.. ++..+..++.
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~---------~~~-------~~~p~~rva~i~~s~~ 308 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY---------DEQ-------EYHPEPRVAAILASHY 308 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT---------TTC-------CEESCCCEEEEEECSS
T ss_pred eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc---------ccc-------cccCCCceEEEEEcCC
Confidence 8998 5554444444457999999988765433332211000 000 00112 4666777777
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcceeE---eecCceEEEEEcCCCCEEEEee-CCCeEEEEEccc
Q psy9316 177 NPDLLSTASGDKTVRIWDARTQKSQII---ATKGENINITWAPNGNTIAVGN-KEDLVTFIDVVK 237 (264)
Q Consensus 177 ~~~~i~s~~~dg~i~iwD~~t~~~~~~---~~~~~~~~v~~sp~g~~la~gs-~d~~i~~~d~~~ 237 (264)
++.++++...+|.|.++|..+...... ........+.|+|+|+++++++ .++.|.++|+.+
T Consensus 309 ~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 309 RPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp SSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred CCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence 677888888899999999987542111 1123456789999999987665 689999999875
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-07 Score=89.20 Aligned_cols=162 Identities=11% Similarity=0.037 Sum_probs=98.1
Q ss_pred CCCCEEEEEECCCCCeEEEEECCC-----cEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCc----
Q psy9316 50 HGSKVHSVAWSCDGRRLASGSFDK-----SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT---- 120 (264)
Q Consensus 50 h~~~V~~l~~s~~g~~l~s~s~dg-----~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~---- 120 (264)
|...+..++|||||++|+.++.++ .|++||+.... ... ... ....+..++|+|++ +.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~-~~~-~~~--~~~~~~~~~wspDg-~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK-ELP-DVL--ERVKFSCMAWTHDG-KGMFYNAYPQQDGKS 197 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE-EEE-EEE--EEECSCCEEECTTS-SEEEEEECCCCSSCC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-CCc-ccc--cCcccceEEEEeCC-CEEEEEEECCccccc
Confidence 444688999999999999876543 89999986422 211 112 12236678999966 55666666654
Q ss_pred ------------EEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeC--
Q psy9316 121 ------------VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG-- 186 (264)
Q Consensus 121 ------------i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~-- 186 (264)
|++|++.+++....+ ++ ....|...+..+.|+|++..++++...
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~----------v~------------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 255 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDIL----------CA------------EFPDEPKWMGGAELSDDGRYVLLSIREGC 255 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEE----------EE------------CCTTCTTCEEEEEECTTSCEEEEEEECSS
T ss_pred cccccccCCCCEEEEEECCCCcccceE----------Ee------------ccCCCCeEEEEEEEcCCCCEEEEEEEccC
Confidence 777777654322111 00 001233446678899876544443331
Q ss_pred --CCcEEEEeCCC------Cc--ceeEeecCceEEEEEcCCCCEEEEeeCCC----eEEEEEcccC
Q psy9316 187 --DKTVRIWDART------QK--SQIIATKGENINITWAPNGNTIAVGNKED----LVTFIDVVKS 238 (264)
Q Consensus 187 --dg~i~iwD~~t------~~--~~~~~~~~~~~~v~~sp~g~~la~gs~d~----~i~~~d~~~~ 238 (264)
+..|++||+.+ +. ..............|+|+|+.|+..+..+ .|.+||+.++
T Consensus 256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 321 (710)
T 2xdw_A 256 DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDP 321 (710)
T ss_dssp SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred CCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 57899999986 42 22222222222235899999988777644 5999998654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-07 Score=77.53 Aligned_cols=188 Identities=11% Similarity=0.061 Sum_probs=120.4
Q ss_pred CeeEEEeecCceEEeccc--cccccccccCC-CCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecc-ccc
Q psy9316 23 SQFHLVCKIDDYVKHFNT--HNDIKEYQAHG-SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH-TGS 98 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~-~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h-~~~ 98 (264)
.+++++++.++.+..|+. ++.+-++..+. ..+.++.++|+|+.++ +.++.|..||. . +. ....+..+ ...
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~-G~--~~W~~~~~~~~~ 78 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D-GR--ELWNIAAPAGCE 78 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T-SC--EEEEEECCTTCE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C-CC--EEEEEcCCCCcc
Confidence 355556677888888764 45566666665 4688999999999888 45777888875 2 32 22223333 235
Q ss_pred EEeEEEecCCCCeEEEEeC-CCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCC
Q psy9316 99 VDQLCWHATNPDLLSTASG-DKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 177 (264)
Q Consensus 99 v~~i~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~ 177 (264)
+..+.+.+++ +++++.+. ++.+..+|.+ ++.. |.+...... ..+......+...+ +
T Consensus 79 ~~~~~~~~dG-~~lv~~~~~~~~v~~vd~~-Gk~l--------------~~~~~~~~~------~~~~~~~~~v~~~~-~ 135 (276)
T 3no2_A 79 MQTARILPDG-NALVAWCGHPSTILEVNMK-GEVL--------------SKTEFETGI------ERPHAQFRQINKNK-K 135 (276)
T ss_dssp EEEEEECTTS-CEEEEEESTTEEEEEECTT-SCEE--------------EEEEECCSC------SSGGGSCSCCEECT-T
T ss_pred ccccEECCCC-CEEEEecCCCCEEEEEeCC-CCEE--------------EEEeccCCC------CcccccccCceECC-C
Confidence 6777777754 67776666 6666666653 2211 211111110 11222333445555 4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcceeE-eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 178 PDLLSTASGDKTVRIWDARTQKSQII-ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 178 ~~~i~s~~~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
+.++++...++.|..||.+ ++.... .....+.++...++|+.+++++.++.|..+|..++..
T Consensus 136 G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 136 GNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred CCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 5788888899999999998 554333 2334566788899999999999899999999774443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-07 Score=88.85 Aligned_cols=161 Identities=14% Similarity=0.056 Sum_probs=96.9
Q ss_pred cCCCCEEEEEECCCCCeEEE-----EECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCc---
Q psy9316 49 AHGSKVHSVAWSCDGRRLAS-----GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT--- 120 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s-----~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~--- 120 (264)
+|...+..++|||||++|+. |+.+..|++||+........ ..+.. .....++|+|++ +.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~--~~~~~~~wspDg-~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEG--GKYATPKWTPDS-KGFYYEWLPTDPSI 193 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSC--CTTCCCEECTTS-SEEEEEECCCCTTS
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCc--ccccceEEecCC-CEEEEEEecCCCCC
Confidence 45557899999999999984 34456899999875332101 01111 112578999966 56667777665
Q ss_pred ----------EEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCC--
Q psy9316 121 ----------VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK-- 188 (264)
Q Consensus 121 ----------i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg-- 188 (264)
|++|++.++.....++ + ....|...+..+.|+|++..++++ +.++
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv----------~------------~~~~~~~~~~~~~~SpDG~~l~~~-~~~~~~ 250 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVV----------H------------ERTGDPTTFLQSDLSRDGKYLFVY-ILRGWS 250 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEE----------E------------CCCCCTTCEEEEEECTTSCCEEEE-EEETTT
T ss_pred ccccCCCCCEEEEEECCCCchhceEE----------E------------ecCCCCEEEEEEEECCCCCEEEEE-EeCCCC
Confidence 8888887654321111 1 012234467788999976555444 4444
Q ss_pred --cEEEEeCCCCcceeEe-ecCceEEEEEcCCCCEEEEeeC----CCeEEEEEcccC
Q psy9316 189 --TVRIWDARTQKSQIIA-TKGENINITWAPNGNTIAVGNK----EDLVTFIDVVKS 238 (264)
Q Consensus 189 --~i~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~~la~gs~----d~~i~~~d~~~~ 238 (264)
.|++||..++...... .........| |+|+ ++..+. ++.|.+||+.++
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~ 305 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP 305 (695)
T ss_dssp EEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred ceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence 6777776655443332 2334455556 6677 555554 578999998654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.8e-07 Score=74.82 Aligned_cols=203 Identities=11% Similarity=0.145 Sum_probs=111.4
Q ss_pred EeecCCCeeEEEeecC--ce--EEecccc-ccccccccCCCCEEEEEECCCCCeEEEEECC-------------------
Q psy9316 17 KLLPSGSQFHLVCKID--DY--VKHFNTH-NDIKEYQAHGSKVHSVAWSCDGRRLASGSFD------------------- 72 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d--~~--~~~~~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d------------------- 72 (264)
.+.|.|..+....... +. ++.++.. ...+.+..+.. +..+.|+|||+.|+.++.+
T Consensus 65 ~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g 143 (347)
T 2gop_A 65 RISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDD 143 (347)
T ss_dssp EECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---
T ss_pred EECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecC
Confidence 5667676544332222 33 4444432 22222333334 8999999999999987743
Q ss_pred --------CcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCC-------cEEEEECCCCCcceEE--
Q psy9316 73 --------KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK-------TVRIWDARTQKSQIML-- 135 (264)
Q Consensus 73 --------g~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg-------~i~vwd~~~~~~~~~~-- 135 (264)
..|.+|++.. +... ..+.. . .+..+.|+|++ ++++++.++ ...+|.+++++...+.
T Consensus 144 ~~~~~~~~~~l~~~d~~~-~~~~--~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~ 216 (347)
T 2gop_A 144 LGFFDGEKTTFWIFDTES-EEVI--EEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK 216 (347)
T ss_dssp ------CEEEEEEEETTT-TEEE--EEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE
T ss_pred cccccCccceEEEEECCC-CeEE--eeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceEEeccC
Confidence 4677787653 2210 12222 3 67888999866 777776542 3444443333211110
Q ss_pred ---EeecCCCc----------------EEEEEeccCCCccceEEEeccccceee-EEEcCCCCCEEEEEeCCCcEEEEeC
Q psy9316 136 ---ASGSFDKS----------------VAIFALDKKGDLNKEVVYRGHTGSVDQ-LCWHATNPDLLSTASGDKTVRIWDA 195 (264)
Q Consensus 136 ---~~~~~d~~----------------i~i~~~~~~~~~~~~~~~~~h~~~i~~-i~~~~~~~~~i~s~~~dg~i~iwD~ 195 (264)
...+.||. ..||.++ .+... .....|...+.. +.|+ + + ++++++.++.++|| +
T Consensus 217 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~--~l~~~~~~~~~~~~~~s-d-g-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 217 VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVM--GILDEVDRGVGQAKIKD-G-K-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEE--ESSTTCCSEEEEEEEET-T-E-EEEEEEETTEEEEE-E
T ss_pred cceeeECCCCCEEEEEEccccCCccccceEEEEC-CCceE--eccccCCcccCCccEEc-C-c-EEEEEecCCcEEEE-E
Confidence 00022222 1222222 11111 112234556775 8897 4 4 88888999999999 8
Q ss_pred CCCcceeE-eecCceEEEEEcCCCCEEEEeeCCCeE-EEEEcc
Q psy9316 196 RTQKSQII-ATKGENINITWAPNGNTIAVGNKEDLV-TFIDVV 236 (264)
Q Consensus 196 ~t~~~~~~-~~~~~~~~v~~sp~g~~la~gs~d~~i-~~~d~~ 236 (264)
.+++.... ...+.+.+++|+| ..+++++.++.. .+|.+.
T Consensus 290 ~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 290 WDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp ESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred cCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 75443222 2244577899999 677777766654 777764
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1e-05 Score=66.69 Aligned_cols=203 Identities=9% Similarity=0.042 Sum_probs=122.1
Q ss_pred eeEEEeecCceEEeccccccccccc--cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEe
Q psy9316 24 QFHLVCKIDDYVKHFNTHNDIKEYQ--AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101 (264)
Q Consensus 24 ~~~~~~~~d~~~~~~~~~~~~~~~~--~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~ 101 (264)
.+.+....++.+..++....+..+. .+...+.+++++++|+..++...++.|..|+.+ +.... .........+..
T Consensus 27 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~-~~~~~~~~~~~~ 103 (299)
T 2z2n_A 27 KVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK--GIIKE-YTLPNPDSAPYG 103 (299)
T ss_dssp CEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEE-EECSSTTCCEEE
T ss_pred CEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC--CcEEE-EeCCCcCCCcee
Confidence 3333333356666665544444433 245679999999999988776667889888754 22211 111123456888
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCCCCcce--------------------EEEeecCCCcEEEEEeccCCCccceEEE
Q psy9316 102 LCWHATNPDLLSTASGDKTVRIWDARTQKSQI--------------------MLASGSFDKSVAIFALDKKGDLNKEVVY 161 (264)
Q Consensus 102 i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~ 161 (264)
+++.+++ .+.++...++.|..||. +++... +.++...++.+..++. .+.... ...
T Consensus 104 i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~--~g~~~~-~~~ 178 (299)
T 2z2n_A 104 ITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE--SGDITE-FKI 178 (299)
T ss_dssp EEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT--TCCEEE-EEC
T ss_pred eEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC--CCcEEE-eeC
Confidence 8888744 66666666888999987 322111 1111222233333432 222211 111
Q ss_pred eccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeec---CceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK---GENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 162 ~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~---~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
......+..+++.++ +.++++...++.|.+||. ++........ ..+..++++++|+.+++...++.|..||..
T Consensus 179 ~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 179 PTPASGPVGITKGND-DALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp SSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred CCCCCcceeEEECCC-CCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 223345778888875 457776667889999999 5553322222 457789999999977776678899999973
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-06 Score=74.32 Aligned_cols=166 Identities=12% Similarity=0.069 Sum_probs=94.5
Q ss_pred CCEEEEEECCCCCeEEEEECC---Cc--EEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeC---------
Q psy9316 52 SKVHSVAWSCDGRRLASGSFD---KS--VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG--------- 117 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s~d---g~--i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~--------- 117 (264)
..+..+.|+|||++|+.++.+ +. |.+|++.. +. ...... +.. +..+.|+|++. .|+.++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~-g~--~~~l~~-~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~ 132 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET-LS--SKKILE-AKN-IRSLEWNEDSR-KLLIVGFKRREDEDFI 132 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT-TE--EEEEEE-ESE-EEEEEECTTSS-EEEEEEECCCC-----
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC-Cc--eEEEEc-CCC-ccceeECCCCC-EEEEEEccCCCcCCcE
Confidence 567889999999999987754 34 55555542 21 111222 233 88999999764 4444442
Q ss_pred ------------------CCcEEEEECCCCCc-ce---------------EEEeecCC------C-cEEEEEeccCCCcc
Q psy9316 118 ------------------DKTVRIWDARTQKS-QI---------------MLASGSFD------K-SVAIFALDKKGDLN 156 (264)
Q Consensus 118 ------------------dg~i~vwd~~~~~~-~~---------------~~~~~~~d------~-~i~i~~~~~~~~~~ 156 (264)
...|++||+.+++. .. +++++..+ . ...+|.++ .+..
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~~~- 210 (347)
T 2gop_A 133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DGKE- 210 (347)
T ss_dssp ----CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TTEE-
T ss_pred EEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCeEEEEEecccccccccccccEEEeC-CCce-
Confidence 25688999987654 11 11122221 1 23444443 2221
Q ss_pred ceEEEeccccceeeEEEcCCCCCEEEEEeCC--------CcEEEEeCCCCcceeEe--ecCceEE-EEEcCCCCEEEEee
Q psy9316 157 KEVVYRGHTGSVDQLCWHATNPDLLSTASGD--------KTVRIWDARTQKSQIIA--TKGENIN-ITWAPNGNTIAVGN 225 (264)
Q Consensus 157 ~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~d--------g~i~iwD~~t~~~~~~~--~~~~~~~-v~~sp~g~~la~gs 225 (264)
..+..+ ..+.. ++|++. .|+.++.+ ..|.+|| +++..... ....+.. +.|+ +| .+++++
T Consensus 211 --~~l~~~-~~~~~--~spdg~-~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~ 280 (347)
T 2gop_A 211 --EKMFEK-VSFYA--VDSDGE-RILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLF 280 (347)
T ss_dssp --EEEEEE-ESEEE--EEECSS-CEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEE
T ss_pred --EEeccC-cceee--ECCCCC-EEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEe
Confidence 112222 33333 366554 44444433 4688888 44322211 1234555 8899 88 889999
Q ss_pred CCCeEEEEEcc
Q psy9316 226 KEDLVTFIDVV 236 (264)
Q Consensus 226 ~d~~i~~~d~~ 236 (264)
.++.+++| +.
T Consensus 281 ~~~~~~l~-~~ 290 (347)
T 2gop_A 281 EEGSVNLY-IW 290 (347)
T ss_dssp ETTEEEEE-EE
T ss_pred cCCcEEEE-Ec
Confidence 99999999 87
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.78 E-value=7.1e-06 Score=68.35 Aligned_cols=202 Identities=11% Similarity=0.164 Sum_probs=116.8
Q ss_pred ecCceEEecccc-cccccccc-----CCCCEEEEEECCC-CCeEEEEECCCcEEEEEeccCCCCccc-EE-Ee-cccccE
Q psy9316 30 KIDDYVKHFNTH-NDIKEYQA-----HGSKVHSVAWSCD-GRRLASGSFDKSVAIFALDKKGDLNKE-VV-YR-GHTGSV 99 (264)
Q Consensus 30 ~~d~~~~~~~~~-~~~~~~~~-----h~~~V~~l~~s~~-g~~l~s~s~dg~i~v~~~~~~~~~~~~-~~-~~-~h~~~v 99 (264)
..++.+..|+.. ..+..+.. +...+.++.++++ |+++++ +.++.|.+|+.+ +..... .. .. .....+
T Consensus 43 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~ 119 (314)
T 1pjx_A 43 KPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLLVVQTD--GTFEEIAKKDSEGRRMQGC 119 (314)
T ss_dssp EECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEEEEETT--SCEEECCSBCTTSCBCBCC
T ss_pred CCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCEEEEeCC--CCEEEEEeccCCCccccCC
Confidence 556777777632 23333332 5567899999999 664444 444578888765 322110 00 00 112347
Q ss_pred EeEEEecCCCCeEEEEeCC---------------CcEEEEECCCCCcc-----------------------eEEEeecCC
Q psy9316 100 DQLCWHATNPDLLSTASGD---------------KTVRIWDARTQKSQ-----------------------IMLASGSFD 141 (264)
Q Consensus 100 ~~i~~~~~~~~~l~s~s~d---------------g~i~vwd~~~~~~~-----------------------~~~~~~~~d 141 (264)
.++.+++++ ++.++...+ +.+..||.+ ++.. .++++...+
T Consensus 120 ~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~ 197 (314)
T 1pjx_A 120 NDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT 197 (314)
T ss_dssp CEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTT
T ss_pred cCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCC
Confidence 888998855 555555444 567777754 2211 112222334
Q ss_pred CcEEEEEeccCCCccceE---EEeccc-cceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc-eeEee-cCceEEEEEc
Q psy9316 142 KSVAIFALDKKGDLNKEV---VYRGHT-GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIAT-KGENINITWA 215 (264)
Q Consensus 142 ~~i~i~~~~~~~~~~~~~---~~~~h~-~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~-~~~~~-~~~~~~v~~s 215 (264)
+.|.+|+....+...... .+..+. .....++++++ +.++++...++.|.+||.++++. ..... ...+.+++++
T Consensus 198 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~-G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~ 276 (314)
T 1pjx_A 198 KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED-NNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFK 276 (314)
T ss_dssp TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT-CCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEEC
T ss_pred CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCC-CCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEEC
Confidence 556666654222211111 112222 45677888875 46777777889999999986553 22222 2567889999
Q ss_pred CCCCEEEE-eeCCCeEEEEEccc
Q psy9316 216 PNGNTIAV-GNKEDLVTFIDVVK 237 (264)
Q Consensus 216 p~g~~la~-gs~d~~i~~~d~~~ 237 (264)
|+|+.|.+ ...++.|..|++..
T Consensus 277 ~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 277 PQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEeCCCCeEEEEeCCC
Confidence 99995544 45567899999764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.8e-07 Score=77.02 Aligned_cols=203 Identities=10% Similarity=0.065 Sum_probs=119.6
Q ss_pred CCCeeEEEeecCceEEecccc--ccccccccCCCCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEeccc-
Q psy9316 21 SGSQFHLVCKIDDYVKHFNTH--NDIKEYQAHGSKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRGHT- 96 (264)
Q Consensus 21 ~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~h~- 96 (264)
.++.+-+....++.+..++.. +.+.++. .......+++++++ .|+.+. .++.|.+||.... ... ..+....
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~-~~~--~~i~~g~~ 126 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTY-EIT--GYIECPDM 126 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTT-EEE--EEEECTTC
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCC-eEE--EEEEcCCc
Confidence 455555555567778777653 4455553 34568899999888 455555 8899999997642 111 1122111
Q ss_pred ----ccEEeEEEecCCCCeEEEEe-CCCcEEEEECCCCCcce------------------EEEeecCC----------Cc
Q psy9316 97 ----GSVDQLCWHATNPDLLSTAS-GDKTVRIWDARTQKSQI------------------MLASGSFD----------KS 143 (264)
Q Consensus 97 ----~~v~~i~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~------------------~~~~~~~d----------~~ 143 (264)
.....+++ .++.++++.. .++.|.++|+++++... ++++...+ +.
T Consensus 127 ~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~ 204 (328)
T 3dsm_A 127 DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS 204 (328)
T ss_dssp CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE
T ss_pred cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCce
Confidence 14456666 2444444443 48999999998754221 22222222 45
Q ss_pred EEEEEeccCCCccceEEEecc-ccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-E-ee--cCceEEEEEcC-C
Q psy9316 144 VAIFALDKKGDLNKEVVYRGH-TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-I-AT--KGENINITWAP-N 217 (264)
Q Consensus 144 i~i~~~~~~~~~~~~~~~~~h-~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~-~~--~~~~~~v~~sp-~ 217 (264)
+.++|..... ... .+.-. ......++++|++..++++ .. .|.+||..+++... . .. ...+..++++| +
T Consensus 205 v~~id~~t~~-v~~--~~~~~~g~~p~~la~~~d~~~lyv~-~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~ 278 (328)
T 3dsm_A 205 LYRIDAETFT-VEK--QFKFKLGDWPSEVQLNGTRDTLYWI-NN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNN 278 (328)
T ss_dssp EEEEETTTTE-EEE--EEECCTTCCCEEEEECTTSCEEEEE-SS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTT
T ss_pred EEEEECCCCe-EEE--EEecCCCCCceeEEEecCCCEEEEE-cc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCC
Confidence 5566543211 111 11111 1246789999866544443 32 99999998876421 1 11 24577899999 5
Q ss_pred CCEEEEe----eCCCeEEEEEcc
Q psy9316 218 GNTIAVG----NKEDLVTFIDVV 236 (264)
Q Consensus 218 g~~la~g----s~d~~i~~~d~~ 236 (264)
++.+++. ..++.|.+||..
T Consensus 279 g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 279 GEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CCEEEEECTTSSSEEEEEEECTT
T ss_pred CeEEEEcccccccCCEEEEECCC
Confidence 5666666 678999999975
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-06 Score=74.92 Aligned_cols=190 Identities=12% Similarity=0.101 Sum_probs=115.4
Q ss_pred eeEEEeecCceEEecccc-ccccccccCCCCEEEEEECCCCCeEEEEECCC--cEEEEEeccCCCCcccEEEec-ccccE
Q psy9316 24 QFHLVCKIDDYVKHFNTH-NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDK--SVAIFALDKKGDLNKEVVYRG-HTGSV 99 (264)
Q Consensus 24 ~~~~~~~~d~~~~~~~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg--~i~v~~~~~~~~~~~~~~~~~-h~~~v 99 (264)
.+.++...++.|+.++.. ..+..+........ ++|+++++.|+.+..++ .|.+++............... ....+
T Consensus 143 ~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p 221 (409)
T 3hrp_A 143 TVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKI 221 (409)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCC
T ss_pred CEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCc
Confidence 333344445667777553 23333332222334 89999999999988766 677776543211111000112 34557
Q ss_pred EeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccc--cceeeEEEcCCC
Q psy9316 100 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT--GSVDQLCWHATN 177 (264)
Q Consensus 100 ~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~--~~i~~i~~~~~~ 177 (264)
.+++++|.++.+++ +..++.|+.||.+++... .+.... . .++. .+...++|+|.+
T Consensus 222 ~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~-~~~~~~-----------~----------~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 222 GAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT-LIKQLE-----------L----------SGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp CBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE-EEEECC-----------C----------CSCCCCSSCCEEEEETTT
T ss_pred EEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE-EEeccc-----------c----------cCCCCCCccccEEEeCCC
Confidence 78899886555444 666889999998765421 111000 0 0011 112378999876
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcceeEeec---------------CceEEEEEcCCCCEEEEee-CCCeEEEEEccc
Q psy9316 178 PDLLSTASGDKTVRIWDARTQKSQIIATK---------------GENINITWAPNGNTIAVGN-KEDLVTFIDVVK 237 (264)
Q Consensus 178 ~~~i~s~~~dg~i~iwD~~t~~~~~~~~~---------------~~~~~v~~sp~g~~la~gs-~d~~i~~~d~~~ 237 (264)
+.++++...++.|+.||............ ..+..++++|+|+++++-+ .++.|+.||+.+
T Consensus 279 g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 279 SNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp TEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred CEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 77888888899999999876422221111 2367899999999888888 899999999543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.5e-06 Score=70.00 Aligned_cols=209 Identities=16% Similarity=0.127 Sum_probs=116.5
Q ss_pred EeecCCCeeEEEeecCceEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccE-EEecc
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGH 95 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~-~~~~h 95 (264)
.+.|.+..+..+...++.+..|+.......+..+...+..+.++++|+++++...++.|.+|+.+ +...... ...+.
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g~~~~~~~~~~~~ 128 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD--GQAHLLVGRYAGK 128 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEECEETTE
T ss_pred eEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC--CCEEEEEeccCCC
Confidence 45566654545555566777776544456666677789999999999976665555788888753 3321110 01111
Q ss_pred -cccEEeEEEecCCCCeEEE----EeC-------------CCcEEEEECCCCCcceE-----------------EEeecC
Q psy9316 96 -TGSVDQLCWHATNPDLLST----ASG-------------DKTVRIWDARTQKSQIM-----------------LASGSF 140 (264)
Q Consensus 96 -~~~v~~i~~~~~~~~~l~s----~s~-------------dg~i~vwd~~~~~~~~~-----------------~~~~~~ 140 (264)
...+.++.+++++ ++.++ |.. .+.|..+|.++++.... +..+..
T Consensus 129 ~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~ 207 (305)
T 3dr2_A 129 RLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQT 207 (305)
T ss_dssp ECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEEC
T ss_pred ccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEec
Confidence 1346678888855 56654 332 25577777755432211 111111
Q ss_pred C------CcEEEEEeccCCCccceEEE-eccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecCceEEEE
Q psy9316 141 D------KSVAIFALDKKGDLNKEVVY-RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINIT 213 (264)
Q Consensus 141 d------~~i~i~~~~~~~~~~~~~~~-~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~ 213 (264)
. +.|..|++...+ +.....+ .........+++.+++ .+.++ +.+ .|.+||...+..........+.+++
T Consensus 208 ~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G-~lwv~-~~~-gv~~~~~~g~~~~~~~~~~~~~~~~ 283 (305)
T 3dr2_A 208 PEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGG-WLWSS-SGT-GVCVFDSDGQLLGHIPTPGTASNCT 283 (305)
T ss_dssp CC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTS-CEEEC-CSS-EEEEECTTSCEEEEEECSSCCCEEE
T ss_pred CCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCC-CEEEe-cCC-cEEEECCCCCEEEEEECCCceeEEE
Confidence 1 344445443222 1111111 1112233457777654 45543 344 4999998655443333444577899
Q ss_pred EcCCCCEEEEeeCCCeEEE
Q psy9316 214 WAPNGNTIAVGNKEDLVTF 232 (264)
Q Consensus 214 ~sp~g~~la~gs~d~~i~~ 232 (264)
|+|+++.|.+++.++..++
T Consensus 284 f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 284 FDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp ECTTSCEEEEEETTEEEEE
T ss_pred EeCCCCEEEEEcCCeEEEE
Confidence 9999999988887655443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-06 Score=69.78 Aligned_cols=176 Identities=13% Similarity=0.083 Sum_probs=107.0
Q ss_pred CEEEEEECCCCCeEE-EEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc
Q psy9316 53 KVHSVAWSCDGRRLA-SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 131 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~-s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~ 131 (264)
...+++++++|+..+ +.+.++.|.+|+..... . ......+...+.++++++++ +++++.. ++.|.+||.+....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~--~-~~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG--T-TVLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc--c-ceEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceE
Confidence 678999999998766 44677899999754211 1 11111233457788998854 4555544 88999999765331
Q ss_pred c-------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEE
Q psy9316 132 Q-------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 192 (264)
Q Consensus 132 ~-------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~i 192 (264)
. .++++...++.|.+++. .... ..............+++++++ .++++...++.|.+
T Consensus 100 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~--~~~~-~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAA--GSKT-QTVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVK 175 (270)
T ss_dssp EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECT--TCCS-CEECCCCSCCSCCCEEECTTC-CEEEEEGGGTEEEE
T ss_pred eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEEC--CCce-eEeeccccCCCceeEEEeCCC-CEEEEECCCCEEEE
Confidence 1 01222222333444421 1111 111111222356778888854 57777777889999
Q ss_pred EeCCCCcceeEee--cCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 193 WDARTQKSQIIAT--KGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 193 wD~~t~~~~~~~~--~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
||..+........ ...+..++++|+|..+++...++.|..||...
T Consensus 176 ~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 176 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred EecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 9998765422211 24577899999998888877888999999754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.1e-07 Score=83.89 Aligned_cols=157 Identities=15% Similarity=0.089 Sum_probs=92.5
Q ss_pred CCCCEEEEEECCCCCeEEEEECC-----CcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCc----
Q psy9316 50 HGSKVHSVAWSCDGRRLASGSFD-----KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT---- 120 (264)
Q Consensus 50 h~~~V~~l~~s~~g~~l~s~s~d-----g~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~---- 120 (264)
|...+..++|||||++|+.++.+ ..|++||+.... ... ...+...+..++|+|+ +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~-~~~---~~~~~~~~~~~~wspD--~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK-PLA---DELKWVKFSGLAWLGN--DALLYSRFAEPKEGQ 234 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC-EEE---EEEEEEESCCCEESTT--SEEEEEECCCC----
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-CCC---ccCCCceeccEEEECC--CEEEEEEecCccccc
Confidence 33468899999999999987654 359999986532 211 1112222357889996 55555665543
Q ss_pred ----------EEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEe--ccccceeeEEEcCCCCCEEEEEeCC-
Q psy9316 121 ----------VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYR--GHTGSVDQLCWHATNPDLLSTASGD- 187 (264)
Q Consensus 121 ----------i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~--~h~~~i~~i~~~~~~~~~i~s~~~d- 187 (264)
|++|++.++..... ..+. .+...+..+.|+|++. +|+..+.+
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~~~------------------------lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~ 289 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSADQ------------------------PVFATPELPKRGHGASVSSDGR-WVVITSSEG 289 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGGCE------------------------EEECCTTCTTCEEEEEECTTSC-EEEEEEECT
T ss_pred ccccCCCCCEEEEEECCCCchhCE------------------------EEeccCCCCeEEEEEEECCCCC-EEEEEEEcc
Confidence 55555544321111 1111 2223467788998654 44444433
Q ss_pred ----CcEEEEeCCCC--c-ceeEee-cCceEEEEEcCCCCEEEEeeCCC----eEEEEEcccC
Q psy9316 188 ----KTVRIWDARTQ--K-SQIIAT-KGENINITWAPNGNTIAVGNKED----LVTFIDVVKS 238 (264)
Q Consensus 188 ----g~i~iwD~~t~--~-~~~~~~-~~~~~~v~~sp~g~~la~gs~d~----~i~~~d~~~~ 238 (264)
..|++||+.++ + ...... ....... ++|+|+.|+..+.++ .|.+||+.++
T Consensus 290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp TCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred CCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 48999999876 3 322222 2223333 459999998888644 4999998653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.63 E-value=9.2e-06 Score=70.05 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=37.4
Q ss_pred eeeEEEcCCCCCEEEEEeCCCcEEEEeCCCC--cceeEe--ecCceEEEEEcCCCC
Q psy9316 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQ--KSQIIA--TKGENINITWAPNGN 219 (264)
Q Consensus 168 i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~--~~~~~~--~~~~~~~v~~sp~g~ 219 (264)
...+.|+|++. ++++++. +.|.+||..+. +..... ....+..++++|+|.
T Consensus 307 p~~ia~spdg~-~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 ALSMTIDQQRN-LMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CCEEEEETTTT-EEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred eeEEEECCCCC-EEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 78899999765 6666665 99999999998 543222 234578899999986
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.62 E-value=3.6e-05 Score=64.19 Aligned_cols=205 Identities=12% Similarity=0.082 Sum_probs=116.0
Q ss_pred EeecCCCeeEEEeecCceEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe--c
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR--G 94 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~--~ 94 (264)
.+.|.+..+..+....+.+..|+..............+.+++++++|+++++ . +..|.+|+.+. +......... .
T Consensus 19 ~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~-g~~~~~~~~~~~~ 95 (297)
T 3g4e_A 19 VWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE-QSAVVLATVDNDK 95 (297)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT-TEEEEEEECCTTC
T ss_pred eEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC-CcEEEEEecCCCC
Confidence 3456555554444456677777654322222234567999999999996554 3 56788888653 2221111011 0
Q ss_pred ccccEEeEEEecCCCCeEEEEeC-----------CCcEEEEECCCCCc------------------ceEEEeecCCCcEE
Q psy9316 95 HTGSVDQLCWHATNPDLLSTASG-----------DKTVRIWDARTQKS------------------QIMLASGSFDKSVA 145 (264)
Q Consensus 95 h~~~v~~i~~~~~~~~~l~s~s~-----------dg~i~vwd~~~~~~------------------~~~~~~~~~d~~i~ 145 (264)
....+.++.++|++ ++.++... .+.+..+|...... ..++++.+.++.|.
T Consensus 96 ~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~ 174 (297)
T 3g4e_A 96 KNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVD 174 (297)
T ss_dssp SSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred CCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEE
Confidence 12347888998865 45543322 12344444332110 01234444556677
Q ss_pred EEEec-cCCCccceEE---EeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-Eeec-CceEEEEEc-CCC
Q psy9316 146 IFALD-KKGDLNKEVV---YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATK-GENINITWA-PNG 218 (264)
Q Consensus 146 i~~~~-~~~~~~~~~~---~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~-~~~~~v~~s-p~g 218 (264)
.|+++ ..+.+..... +..+......+++.+++ .+.++...++.|..||..+++... ...+ ..+.+++|+ |++
T Consensus 175 ~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 175 AFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNY 253 (297)
T ss_dssp EEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGG
T ss_pred EEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCC
Confidence 77764 3333221111 12233456778888754 677777778899999999776432 2333 468899998 898
Q ss_pred CEEEEeeC
Q psy9316 219 NTIAVGNK 226 (264)
Q Consensus 219 ~~la~gs~ 226 (264)
+.|.+.+.
T Consensus 254 ~~L~vt~~ 261 (297)
T 3g4e_A 254 SEMYVTCA 261 (297)
T ss_dssp CEEEEEEB
T ss_pred CEEEEEcC
Confidence 87766554
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.1e-06 Score=79.08 Aligned_cols=177 Identities=12% Similarity=0.103 Sum_probs=102.3
Q ss_pred EEEEECCCCCeEEEEECCCc--------------EEEEEeccCCCCcccEEEecc--cccEEeEEEecCCCCeEEEEeCC
Q psy9316 55 HSVAWSCDGRRLASGSFDKS--------------VAIFALDKKGDLNKEVVYRGH--TGSVDQLCWHATNPDLLSTASGD 118 (264)
Q Consensus 55 ~~l~~s~~g~~l~s~s~dg~--------------i~v~~~~~~~~~~~~~~~~~h--~~~v~~i~~~~~~~~~l~s~s~d 118 (264)
..++|+|| +.|+.++.|+. |.+|++.... .....++... ...+..+.|+|++ ++++..+.+
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~-~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~ 288 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ-SADQPVFATPELPKRGHGASVSSDG-RWVVITSSE 288 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCG-GGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEEC
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCc-hhCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEc
Confidence 57889999 99998887664 7888875422 1122334432 2357889999966 455544433
Q ss_pred -----CcEEEEECCCC--C-cceE-----------------EEeecC----CCcEEEEEeccCCCccceEEEecccccee
Q psy9316 119 -----KTVRIWDARTQ--K-SQIM-----------------LASGSF----DKSVAIFALDKKGDLNKEVVYRGHTGSVD 169 (264)
Q Consensus 119 -----g~i~vwd~~~~--~-~~~~-----------------~~~~~~----d~~i~i~~~~~~~~~~~~~~~~~h~~~i~ 169 (264)
..+++||+.++ + ...+ ++..+. ++.|.++++..... .....+..+...+.
T Consensus 289 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~~l~~~~~~~l~ 367 (741)
T 1yr2_A 289 GTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTP-RFDTVVPESKDNLE 367 (741)
T ss_dssp TTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSC-EEEEEECCCSSEEE
T ss_pred cCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCcc-ccEEEecCCCCeEE
Confidence 37999998765 2 1110 111111 22345555432110 11112233334566
Q ss_pred eEEEcCCCCCEEEEEeCCCcEEEEeCC--CCcceeEee--cCceEEEEEcCCCCEEEEee----CCCeEEEEEccc
Q psy9316 170 QLCWHATNPDLLSTASGDKTVRIWDAR--TQKSQIIAT--KGENINITWAPNGNTIAVGN----KEDLVTFIDVVK 237 (264)
Q Consensus 170 ~i~~~~~~~~~i~s~~~dg~i~iwD~~--t~~~~~~~~--~~~~~~v~~sp~g~~la~gs----~d~~i~~~d~~~ 237 (264)
.+.|. +..++++...|+..+||.+. .+....... .+.+..++++|+++.|+... ..+.+++||+.+
T Consensus 368 ~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 368 SVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred EEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 67775 45688888889988877443 332222222 34567788999998776432 347799999765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.60 E-value=6e-06 Score=72.94 Aligned_cols=224 Identities=14% Similarity=0.110 Sum_probs=124.3
Q ss_pred cCCCCCceEeecCCCeeEEEee---------cCceEEeccccc--cccccccC-------CCCEEEEEECCCCCeEEEEE
Q psy9316 9 HTPKSPEYKLLPSGSQFHLVCK---------IDDYVKHFNTHN--DIKEYQAH-------GSKVHSVAWSCDGRRLASGS 70 (264)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~---------~d~~~~~~~~~~--~~~~~~~h-------~~~V~~l~~s~~g~~l~s~s 70 (264)
.....|...+.|.+..+.+... .++.+..++..+ .+.++..- ......+.|+|||++|+.+.
T Consensus 116 ~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n 195 (426)
T 3c75_H 116 DGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQ 195 (426)
T ss_dssp EECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEE
T ss_pred ECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEe
Confidence 3344564566666655433321 355677776543 33333211 12345688999999999987
Q ss_pred C--CCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc----------------
Q psy9316 71 F--DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ---------------- 132 (264)
Q Consensus 71 ~--dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---------------- 132 (264)
. ++.|.+.|+....... .+.- ... ....|.+...+++.+.||.+.+.|..+++..
T Consensus 196 ~~~~~~VsVID~~t~kvv~---~I~v--~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~ 268 (426)
T 3c75_H 196 FSPAPAVGVVDLEGKTFDR---MLDV--PDC--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLIN 268 (426)
T ss_dssp CSSSCEEEEEETTTTEEEE---EEEC--CSE--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCS
T ss_pred cCCCCeEEEEECCCCeEEE---EEEc--CCc--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceee
Confidence 4 5789999976532111 1211 001 1223334455556666777666666332211
Q ss_pred --------eEEEeecCCCcEEEEEeccCCCcc-ceEEEe--------ccccceeeEEEcCCCCCEEEEEe---------C
Q psy9316 133 --------IMLASGSFDKSVAIFALDKKGDLN-KEVVYR--------GHTGSVDQLCWHATNPDLLSTAS---------G 186 (264)
Q Consensus 133 --------~~~~~~~~d~~i~i~~~~~~~~~~-~~~~~~--------~h~~~i~~i~~~~~~~~~i~s~~---------~ 186 (264)
..+...+..+.+.+.|........ ...... ........+.++|++..++++.. .
T Consensus 269 ~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~ 348 (426)
T 3c75_H 269 HPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAA 348 (426)
T ss_dssp CCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSC
T ss_pred EeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCC
Confidence 011122345566666653221100 000000 00112233678887666666543 2
Q ss_pred CCcEEEEeCCCCcceeE-eecCceEEEEEcCCCC-EEEEee-CCCeEEEEEcccCC
Q psy9316 187 DKTVRIWDARTQKSQII-ATKGENINITWAPNGN-TIAVGN-KEDLVTFIDVVKSL 239 (264)
Q Consensus 187 dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~-~la~gs-~d~~i~~~d~~~~~ 239 (264)
++.|.+.|..+.+.... .....+..++|+|||+ .+++.. .++.|.++|+.+..
T Consensus 349 s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 349 SRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 35799999999885333 3344578899999999 887777 59999999987643
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=0.00011 Score=60.29 Aligned_cols=196 Identities=11% Similarity=0.075 Sum_probs=114.4
Q ss_pred ecCceEEeccccccccccc--cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecC
Q psy9316 30 KIDDYVKHFNTHNDIKEYQ--AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107 (264)
Q Consensus 30 ~~d~~~~~~~~~~~~~~~~--~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 107 (264)
..++.+..++....++.+. .....+.++.++++|+..++...++.|.+|+. .+.... .........+..+++.++
T Consensus 75 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~--~g~~~~-~~~~~~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 75 NAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD--DGKIRE-YELPNKGSYPSFITLGSD 151 (299)
T ss_dssp TTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT--TCCEEE-EECSSTTCCEEEEEECTT
T ss_pred CCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC--CCCEEE-ecCCCCCCCCceEEEcCC
Confidence 3356566665443343333 24457899999999988877767788988875 232211 112223456788888875
Q ss_pred CCCeEEEEeCCCcEEEEECCCCCcce--------------------EEEeecCCCcEEEEEeccCCCccceEEEeccccc
Q psy9316 108 NPDLLSTASGDKTVRIWDARTQKSQI--------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167 (264)
Q Consensus 108 ~~~~l~s~s~dg~i~vwd~~~~~~~~--------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~ 167 (264)
+ ++.++...++.|..||. +++... +.++...++.+..++. .+... ......+...
T Consensus 152 g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~--~g~~~-~~~~~~~~~~ 226 (299)
T 2z2n_A 152 N-ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT--SGEIT-EFKIPTPNAR 226 (299)
T ss_dssp S-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT--TCCEE-EEECSSTTCC
T ss_pred C-CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC--CCcEE-EEECCCCCCC
Confidence 5 56665556788999987 432211 1111112233444433 22211 1112223456
Q ss_pred eeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee---cCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT---KGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 168 i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~---~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
+..+++.+++ .++++...++.|..||.. ++...... ...+.++++ ++|+.+++.+ .+.+..+|..+
T Consensus 227 ~~~i~~~~~g-~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 227 PHAITAGAGI-DLWFTEWGANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp EEEEEECSTT-CEEEEETTTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred ceeEEECCCC-CEEEeccCCceEEEECCC-CceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 7889998754 576665578999999984 43222211 235678888 8888777655 56667777543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.54 E-value=6.8e-06 Score=69.81 Aligned_cols=176 Identities=10% Similarity=-0.016 Sum_probs=107.7
Q ss_pred CCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc
Q psy9316 52 SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 131 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~ 131 (264)
.....+.+. +++..++...++.|.++|..+. .. ...+. .......+++++++ .+.++...++.|.+||.++.+.
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~-~~--~~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~ 117 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF-KE--VGRIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEI 117 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC-CE--EEEEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECccc-EE--EEEcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeE
Confidence 446777774 3344444455789999997642 22 12232 33567888887755 5555444799999999987542
Q ss_pred ce-----------------------EEEeec-CCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCC
Q psy9316 132 QI-----------------------MLASGS-FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD 187 (264)
Q Consensus 132 ~~-----------------------~~~~~~-~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~d 187 (264)
.. ++++.. .++.|.++|........ .... ......+.++|++ .+++++..+
T Consensus 118 ~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~---~i~~-g~~p~~i~~~~dG-~l~v~~~~~ 192 (328)
T 3dsm_A 118 TGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVD---ELTI-GIQPTSLVMDKYN-KMWTITDGG 192 (328)
T ss_dssp EEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEE---EEEC-SSCBCCCEECTTS-EEEEEBCCB
T ss_pred EEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEE---EEEc-CCCccceEEcCCC-CEEEEECCC
Confidence 21 122222 35667777654322111 1111 1223567787754 466665544
Q ss_pred ----------CcEEEEeCCCCcceeEe-ec--CceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 188 ----------KTVRIWDARTQKSQIIA-TK--GENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 188 ----------g~i~iwD~~t~~~~~~~-~~--~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
+.|.++|..+.+..... .. ..+..++++|+++.|.++.. .+.+||+.++..
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred ccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 78999999987643222 21 25788999999999887765 889999876443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.51 E-value=0.00018 Score=58.96 Aligned_cols=202 Identities=10% Similarity=0.026 Sum_probs=118.0
Q ss_pred eEEEeecCceEEeccccccccccc--cCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeE
Q psy9316 25 FHLVCKIDDYVKHFNTHNDIKEYQ--AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 102 (264)
Q Consensus 25 ~~~~~~~d~~~~~~~~~~~~~~~~--~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i 102 (264)
+-+....++.+..++....+..+. .+...+.++.++++++..++...++.|..|+.. +... ..........+..+
T Consensus 33 l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~--g~~~-~~~~~~~~~~~~~i 109 (300)
T 2qc5_A 33 VWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK--GGFT-EYPLPQPDSGPYGI 109 (300)
T ss_dssp EEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEE-EEECSSTTCCEEEE
T ss_pred EEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC--CCeE-EecCCCCCCCCccc
Confidence 333333456666665443333332 233678999999999877776667888888754 3221 11122233568888
Q ss_pred EEecCCCCeEEEEeCCCcEEEEECCCCCcce--------------------EEEeecCCCcEEEEEeccCCCccceEEEe
Q psy9316 103 CWHATNPDLLSTASGDKTVRIWDARTQKSQI--------------------MLASGSFDKSVAIFALDKKGDLNKEVVYR 162 (264)
Q Consensus 103 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~ 162 (264)
++.+++ ++.++...++.|..+|.+ ++... +.++...++.|..++. .+.... ....
T Consensus 110 ~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~--~g~~~~-~~~~ 184 (300)
T 2qc5_A 110 TEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN--TGKLEE-YPLP 184 (300)
T ss_dssp EECSTT-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT--TCCEEE-EECS
T ss_pred eECCCC-CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC--CCcEEE-eeCC
Confidence 888744 566665557888888876 32111 1111111223333332 222211 1111
Q ss_pred ccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee---cCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 163 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT---KGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 163 ~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~---~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.+...+..+++.++ +.++++....+.|.+||. ++....... ...+.+++++++|+.+++...++.|..||..
T Consensus 185 ~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 185 TNAAAPVGITSGND-GALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp STTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCCCCcceEEECCC-CCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 23345778888874 467776666778999998 443322211 2346789999999977777677899999973
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.49 E-value=5.9e-05 Score=65.63 Aligned_cols=224 Identities=15% Similarity=0.120 Sum_probs=125.4
Q ss_pred ecCCCCCceEeecCCCeeEEEee---------cCceEEeccccc--cccccccC-------CCCEEEEEECCCCCeEEEE
Q psy9316 8 FHTPKSPEYKLLPSGSQFHLVCK---------IDDYVKHFNTHN--DIKEYQAH-------GSKVHSVAWSCDGRRLASG 69 (264)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~---------~d~~~~~~~~~~--~~~~~~~h-------~~~V~~l~~s~~g~~l~s~ 69 (264)
+..-+.|...+.|.+..+..... .++.+..++..+ .+.++.-. ......+.|+|||++|+.+
T Consensus 75 I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVa 154 (386)
T 3sjl_D 75 IDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFY 154 (386)
T ss_dssp EEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEE
T ss_pred EECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEE
Confidence 33344465677777765433321 256677776543 33333211 1234568999999999988
Q ss_pred EC--CCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCC-CCcc--------------
Q psy9316 70 SF--DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART-QKSQ-------------- 132 (264)
Q Consensus 70 s~--dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~-------------- 132 (264)
.. ++.|.++|+...... ..+.-. .+ ....|.+.+.+++.+.||.+-+.++.. ++..
T Consensus 155 n~~~~~~VsVID~~t~~vv---~tI~v~--g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~ 227 (386)
T 3sjl_D 155 QFSPAPAVGVVDLEGKAFK---RMLDVP--DC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 227 (386)
T ss_dssp ECSSSCEEEEEETTTTEEE---EEEECC--SE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCB
T ss_pred EcCCCCeEEEEECCCCcEE---EEEECC--Cc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccc
Confidence 74 689999998653211 112110 01 112344555666677777777777654 2210
Q ss_pred ---e-------EEEeecCCCcEEEEEeccCCC-ccceEE-Ee-------ccccceeeEEEcCCCCCEEEEEeC-------
Q psy9316 133 ---I-------MLASGSFDKSVAIFALDKKGD-LNKEVV-YR-------GHTGSVDQLCWHATNPDLLSTASG------- 186 (264)
Q Consensus 133 ---~-------~~~~~~~d~~i~i~~~~~~~~-~~~~~~-~~-------~h~~~i~~i~~~~~~~~~i~s~~~------- 186 (264)
. .++-.+.++.+.+.+...... ...... +. -....+..+.+++....++++-..
T Consensus 228 ~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk 307 (386)
T 3sjl_D 228 INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 307 (386)
T ss_dssp CSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred cccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccC
Confidence 0 011233455666666543221 111110 00 011233456777766666655431
Q ss_pred --CCcEEEEeCCCCcceeEe-ecCceEEEEEcCCCC-EEEEe-eCCCeEEEEEcccC
Q psy9316 187 --DKTVRIWDARTQKSQIIA-TKGENINITWAPNGN-TIAVG-NKEDLVTFIDVVKS 238 (264)
Q Consensus 187 --dg~i~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~-~la~g-s~d~~i~~~d~~~~ 238 (264)
.+.|-+.|+.+++..... ....+.+++++||++ .|.+. ..++.|.++|+.++
T Consensus 308 ~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 308 TASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 357999999998864333 344677999999997 55554 45899999998754
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.2e-07 Score=80.67 Aligned_cols=166 Identities=14% Similarity=0.089 Sum_probs=86.8
Q ss_pred CCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce--------
Q psy9316 62 DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-------- 133 (264)
Q Consensus 62 ~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-------- 133 (264)
++..|++++.|+.|..||... ++. .-.++. +.+.+..+.. ++.++++++.||.++.||.++++...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~t-G~~--~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRT-GSI--KWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTT-CCE--EEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCE--EEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 578999999999999999764 322 112222 3343333333 33567777899999999987654311
Q ss_pred ------------EEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce
Q psy9316 134 ------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 201 (264)
Q Consensus 134 ------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~ 201 (264)
.+++++.++.+..||......... +..+. ...++| ....+++++.|+.|+.||.++++..
T Consensus 82 ~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~---~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 82 LVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQT---LSSAF----ADSLSP-STSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp HHTTCSCC-----CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred ccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEE---ecCCC----cccccc-cCCEEEEEecCCEEEEEECCCCCEE
Confidence 233445566677776654332221 11111 123445 3456777888999999999988753
Q ss_pred eEeecCceEEEEEcCCC---CEEEEeeCCCeEEEEEcccCCCC
Q psy9316 202 IIATKGENINITWAPNG---NTIAVGNKEDLVTFIDVVKSLPP 241 (264)
Q Consensus 202 ~~~~~~~~~~v~~sp~g---~~la~gs~d~~i~~~d~~~~~~~ 241 (264)
-..........+++++. ..+++++.|+.++.||..++...
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 154 WNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp CEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred EeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence 22211111223334432 56777889999999998765543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-05 Score=75.39 Aligned_cols=178 Identities=12% Similarity=0.134 Sum_probs=105.0
Q ss_pred EEEEECCCCCeEEEEECCCc-------------EEEEEeccCCCCcccEEEec---ccccEEeEEEecCCCCeEEEEeC-
Q psy9316 55 HSVAWSCDGRRLASGSFDKS-------------VAIFALDKKGDLNKEVVYRG---HTGSVDQLCWHATNPDLLSTASG- 117 (264)
Q Consensus 55 ~~l~~s~~g~~l~s~s~dg~-------------i~v~~~~~~~~~~~~~~~~~---h~~~v~~i~~~~~~~~~l~s~s~- 117 (264)
..++|+ |++.|+.++.+.. |.+|++..... ....++.. |...+..+.|+|++..++++.+.
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 255 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE-DDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS 255 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGG-GCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcc-cceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC
Confidence 467899 9999999988754 88888764321 22234433 33456788999977555555543
Q ss_pred --CCcEEEEECCCCCcce--------------------EEEeecCC---CcEEEEEeccCCCccceEEEeccccceeeEE
Q psy9316 118 --DKTVRIWDARTQKSQI--------------------MLASGSFD---KSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 172 (264)
Q Consensus 118 --dg~i~vwd~~~~~~~~--------------------~~~~~~~d---~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~ 172 (264)
+..++++|+.++.... +++....+ +.|..+++.... ......+..|...+. .
T Consensus 256 ~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~-~~~~~~l~~~~~~~~--~ 332 (693)
T 3iuj_A 256 TSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPG-PAHWRDLIPERQQVL--T 332 (693)
T ss_dssp SSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCC-GGGCEEEECCCSSCE--E
T ss_pred CCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC-ccccEEEecCCCCEE--E
Confidence 2578999987652111 11222222 234444443221 111123344444443 6
Q ss_pred EcCCCCCEEEEEeCCC--cEEEEeCCCCcceeEeec--CceEEEEEcCCCCEEEEeeCC----CeEEEEEccc
Q psy9316 173 WHATNPDLLSTASGDK--TVRIWDARTQKSQIIATK--GENINITWAPNGNTIAVGNKE----DLVTFIDVVK 237 (264)
Q Consensus 173 ~~~~~~~~i~s~~~dg--~i~iwD~~t~~~~~~~~~--~~~~~v~~sp~g~~la~gs~d----~~i~~~d~~~ 237 (264)
|++.+..++++...++ .|++||+.++.......+ +.+..++++|+++.++....+ +.++.||+.+
T Consensus 333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 333 VHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred EEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 7776555555555565 688999986654333222 345567788999888777656 7899999764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.7e-05 Score=64.34 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=104.2
Q ss_pred cccccccCCCCEEEEEECCCCC-eEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcE
Q psy9316 43 DIKEYQAHGSKVHSVAWSCDGR-RLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 121 (264)
Q Consensus 43 ~~~~~~~h~~~V~~l~~s~~g~-~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i 121 (264)
.++.+...........|+|+++ .+++...++.|..|+.. +.. ..+..+...+..+.+++++ +++++...++.|
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~--g~~---~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v 109 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED--GTV---DVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAI 109 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT--SCE---EEEEESCSCEEEEEECTTS-CEEEEETTTTEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC--CCE---EEEeCCCCccceeeECCCC-CEEEEECCCCEE
Confidence 3444555556678899999998 55666678899999752 322 2344556678899998855 555544456788
Q ss_pred EEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEE----EeC-----------
Q psy9316 122 RIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST----ASG----------- 186 (264)
Q Consensus 122 ~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s----~~~----------- 186 (264)
.+||.+ ++.. .++.. . . ......++.+.+.|++ .+++| |..
T Consensus 110 ~~~~~~-g~~~-~~~~~-~-----------~---------~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~ 165 (305)
T 3dr2_A 110 TRSDAD-GQAH-LLVGR-Y-----------A---------GKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPE 165 (305)
T ss_dssp EEECTT-SCEE-EEECE-E-----------T---------TEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCS
T ss_pred EEECCC-CCEE-EEEec-c-----------C---------CCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccc
Confidence 888875 3311 11100 0 0 0011245678888754 56665 221
Q ss_pred --CCcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCC------CeEEEEEccc
Q psy9316 187 --DKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKE------DLVTFIDVVK 237 (264)
Q Consensus 187 --dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d------~~i~~~d~~~ 237 (264)
.+.|..||..+++............++|+|+|+.|.++... +.|..||+..
T Consensus 166 ~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 166 LAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp SSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred cCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence 35688888876664332233456789999999988777665 7899999864
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.42 E-value=6.5e-05 Score=62.42 Aligned_cols=177 Identities=10% Similarity=0.076 Sum_probs=105.9
Q ss_pred CCEEEEEECCCCCeEEE-------EECCCcEEEEEeccCCCCcccEEEe-----cccccEEeEEEecCCCCeEEEEeCCC
Q psy9316 52 SKVHSVAWSCDGRRLAS-------GSFDKSVAIFALDKKGDLNKEVVYR-----GHTGSVDQLCWHATNPDLLSTASGDK 119 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s-------~s~dg~i~v~~~~~~~~~~~~~~~~-----~h~~~v~~i~~~~~~~~~l~s~s~dg 119 (264)
....+++|+++++.+++ +..++.|.+|+... +... .+. ++...+..+.++++++++++ ++...
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~-g~~~---~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~ 92 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT-GKKT---VICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRL 92 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT-CCEE---EEECCEETTEECCEEEEEECSSSSEEEE-EETTT
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC-CcEE---EEEecccCCCCCCCceEEEecCCCcEEE-EECCC
Confidence 35678999999988777 56788999997543 2221 122 24466889999876244444 44444
Q ss_pred cEEEEECCCCCcceE--------------EEeecCCCc-----------------------EEEEEeccCCCccceEEEe
Q psy9316 120 TVRIWDARTQKSQIM--------------LASGSFDKS-----------------------VAIFALDKKGDLNKEVVYR 162 (264)
Q Consensus 120 ~i~vwd~~~~~~~~~--------------~~~~~~d~~-----------------------i~i~~~~~~~~~~~~~~~~ 162 (264)
.|.+||.+ ++.... -+.-..++. ..+|.++..+... ...
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~---~~~ 168 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMI---QVD 168 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEE---EEE
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEE---Eec
Confidence 78888875 321100 001112222 2333333222211 112
Q ss_pred ccccceeeEEEc----CCCCCEEEEEeCCCcEEEEeCC-CCcc----eeEeec----CceEEEEEcCCCCEEEEeeCCCe
Q psy9316 163 GHTGSVDQLCWH----ATNPDLLSTASGDKTVRIWDAR-TQKS----QIIATK----GENINITWAPNGNTIAVGNKEDL 229 (264)
Q Consensus 163 ~h~~~i~~i~~~----~~~~~~i~s~~~dg~i~iwD~~-t~~~----~~~~~~----~~~~~v~~sp~g~~la~gs~d~~ 229 (264)
.+......++++ |++..++++...++.|.+||.. ++.. ...... ..+..++++++|+.+++...++.
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 223345678888 7654456666678999999986 3331 111111 34677999999999988888999
Q ss_pred EEEEEccc
Q psy9316 230 VTFIDVVK 237 (264)
Q Consensus 230 i~~~d~~~ 237 (264)
|..||..+
T Consensus 249 i~~~d~~~ 256 (314)
T 1pjx_A 249 IEVFGPDG 256 (314)
T ss_dssp EEEECTTC
T ss_pred EEEEcCCC
Confidence 99999763
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00014 Score=63.84 Aligned_cols=169 Identities=11% Similarity=0.084 Sum_probs=105.4
Q ss_pred CCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEE----EecccccE-E-eEEEecCCCCeEEEEeCCCcEEE
Q psy9316 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV----YRGHTGSV-D-QLCWHATNPDLLSTASGDKTVRI 123 (264)
Q Consensus 50 h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~----~~~h~~~v-~-~i~~~~~~~~~l~s~s~dg~i~v 123 (264)
....+.+++++|+...|+.+..++.|..|+.+... . ... ..++...- . .++|+|.++.++++-..++.|+.
T Consensus 217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-~--~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~ 293 (409)
T 3hrp_A 217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-V--TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYK 293 (409)
T ss_dssp SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-E--EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-E--EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEE
Confidence 44567889999965566667778889999875321 1 111 11122222 2 89999976677777777889999
Q ss_pred EECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEe-CCCcEEEEeCCCCccee
Q psy9316 124 WDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS-GDKTVRIWDARTQKSQI 202 (264)
Q Consensus 124 wd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~-~dg~i~iwD~~t~~~~~ 202 (264)
||.+.. .....+... ..+. ..-.........-..++++|++ .++++-. .++.|+.||+.++....
T Consensus 294 ~~~~g~---~~~~~g~~~---------~~g~-~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v~~ 359 (409)
T 3hrp_A 294 ITPDGE---CEWFCGSAT---------QKTV-QDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYVST 359 (409)
T ss_dssp ECTTCC---EEEEEECTT---------CCSC-BCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEEEE
T ss_pred EecCCC---EEEEEeCCC---------CCCc-CCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEEEE
Confidence 987643 112222110 0000 0000000112235678898864 5777777 88999999977766433
Q ss_pred Eeec----------------CceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q psy9316 203 IATK----------------GENINITWAPNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 203 ~~~~----------------~~~~~v~~sp~g~~la~gs~d~~i~~~d~ 235 (264)
.... ..+..++++|+|.++++...++.|+.+++
T Consensus 360 ~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 360 VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 3221 34678999999999999999999998875
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-05 Score=69.08 Aligned_cols=192 Identities=11% Similarity=-0.008 Sum_probs=108.8
Q ss_pred cccccccccCCCCEEEEEECCCCCeEEEEE----------CCCcEEEEEeccCCCCcccEEEecc-------cccEEeEE
Q psy9316 41 HNDIKEYQAHGSKVHSVAWSCDGRRLASGS----------FDKSVAIFALDKKGDLNKEVVYRGH-------TGSVDQLC 103 (264)
Q Consensus 41 ~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s----------~dg~i~v~~~~~~~~~~~~~~~~~h-------~~~v~~i~ 103 (264)
.+.+.++..-..+ .+.++||+++++.+. .++.|.+||..+.... ..+... -.....+.
T Consensus 56 ~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv---~~I~v~~~~~~~~g~~P~~ia 130 (368)
T 1mda_H 56 GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI---ADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE---EEEEETTSCSCCBSCCTTSEE
T ss_pred CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE---EEEECCCccccccCCCcceEE
Confidence 4455555433345 699999999999886 3678999998653321 112211 02345778
Q ss_pred EecCCCCeEEEEeC--CCcEEE--EECCCCC-------------cceEEEeecCCCcEEEEEecc----CCCcc------
Q psy9316 104 WHATNPDLLSTASG--DKTVRI--WDARTQK-------------SQIMLASGSFDKSVAIFALDK----KGDLN------ 156 (264)
Q Consensus 104 ~~~~~~~~l~s~s~--dg~i~v--wd~~~~~-------------~~~~~~~~~~d~~i~i~~~~~----~~~~~------ 156 (264)
++|++. +++.+.. +..+.+ +|+.+-+ ....+++.+.|+.+...++.. .+...
T Consensus 131 ~SpDGk-~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~ 209 (368)
T 1mda_H 131 NCASSA-CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA 209 (368)
T ss_dssp ECTTSS-CEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTT
T ss_pred EcCCCC-EEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeee
Confidence 898765 4544543 456888 8885400 001223344566655555543 10000
Q ss_pred ----------------------ceEEE--ecc---------------------ccceeeEEEcCCCCCEEEEEe---C--
Q psy9316 157 ----------------------KEVVY--RGH---------------------TGSVDQLCWHATNPDLLSTAS---G-- 186 (264)
Q Consensus 157 ----------------------~~~~~--~~h---------------------~~~i~~i~~~~~~~~~i~s~~---~-- 186 (264)
....+ ... ..+...+.++|++..++++.. .
T Consensus 210 i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~ 289 (368)
T 1mda_H 210 QNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289 (368)
T ss_dssp SCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT
T ss_pred eeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcc
Confidence 00000 000 001112667887666666544 2
Q ss_pred ---CCcEEEEeCCCCccee-EeecCceEEEEEcCCCCEE-EEee-CCCeEEEEEcccC
Q psy9316 187 ---DKTVRIWDARTQKSQI-IATKGENINITWAPNGNTI-AVGN-KEDLVTFIDVVKS 238 (264)
Q Consensus 187 ---dg~i~iwD~~t~~~~~-~~~~~~~~~v~~sp~g~~l-a~gs-~d~~i~~~d~~~~ 238 (264)
++.+.++|+.+.+... ......+..++|+|||+.+ ++.. .++.|.++|+.+.
T Consensus 290 ~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 290 LAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp TSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred cccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence 2356699999987532 2233457889999999855 4444 4899999998753
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=6.2e-05 Score=68.98 Aligned_cols=215 Identities=16% Similarity=0.225 Sum_probs=130.3
Q ss_pred EeecCCCeeEEEeecCceEEecccc----ccccccccCCCCEEEEEEC----CCCCeEEEEEC-CCcEEEEEeccCCCCc
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTH----NDIKEYQAHGSKVHSVAWS----CDGRRLASGSF-DKSVAIFALDKKGDLN 87 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~h~~~V~~l~~s----~~g~~l~s~s~-dg~i~v~~~~~~~~~~ 87 (264)
.+.|.+. +..+++.|+.+..++.. +.+.++.. ......++|+ |||++++++.. ++++.++|..+....
T Consensus 203 ~~SpDGr-~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~- 279 (567)
T 1qks_A 203 RLSASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK- 279 (567)
T ss_dssp EECTTSC-EEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE-
T ss_pred EECCCCC-EEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE-
Confidence 4555554 44566778888887653 33344433 3346789999 69999998765 589999986542211
Q ss_pred ccEEEe--c--------ccc-cEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc---------------------ceEE
Q psy9316 88 KEVVYR--G--------HTG-SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---------------------QIML 135 (264)
Q Consensus 88 ~~~~~~--~--------h~~-~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---------------------~~~~ 135 (264)
..+. + |.. .+..+..++.++.++++...+|.|.++|....+. ..++
T Consensus 280 --~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~ 357 (567)
T 1qks_A 280 --KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFI 357 (567)
T ss_dssp --EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEE
T ss_pred --EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEE
Confidence 1111 1 212 4667777776666777777789999998764321 1234
Q ss_pred EeecCCCcEEEEEeccCCCccceEEE---eccccceeeEEEcCCCCCEEEEEe-CCCcEEEEeCCCCc-------c-eeE
Q psy9316 136 ASGSFDKSVAIFALDKKGDLNKEVVY---RGHTGSVDQLCWHATNPDLLSTAS-GDKTVRIWDARTQK-------S-QII 203 (264)
Q Consensus 136 ~~~~~d~~i~i~~~~~~~~~~~~~~~---~~h~~~i~~i~~~~~~~~~i~s~~-~dg~i~iwD~~t~~-------~-~~~ 203 (264)
++...++.|.++|..... +...... .-|..+.-.+ ++|..+.++++.. .++.|.++|..+.. . ...
T Consensus 358 va~~~sn~V~ViD~~t~k-l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i 435 (567)
T 1qks_A 358 TAANARNKLVVIDTKEGK-LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF 435 (567)
T ss_dssp EEEGGGTEEEEEETTTTE-EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred EEeCCCCeEEEEECCCCc-EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEE
Confidence 555567788888876432 2111111 1233221112 4665555666654 56899999998722 1 112
Q ss_pred eec-CceEEEEEcCCCCEEEEeeC-------CCeEEEEEcccC
Q psy9316 204 ATK-GENINITWAPNGNTIAVGNK-------EDLVTFIDVVKS 238 (264)
Q Consensus 204 ~~~-~~~~~v~~sp~g~~la~gs~-------d~~i~~~d~~~~ 238 (264)
... .....+..+|++++|.+... ++.|.++|+.+.
T Consensus 436 ~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 436 PALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp ECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred ecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 222 22355889999999988763 458999998865
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00041 Score=56.82 Aligned_cols=194 Identities=10% Similarity=0.078 Sum_probs=111.5
Q ss_pred cCceEEecccccccccccc--CCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCC
Q psy9316 31 IDDYVKHFNTHNDIKEYQA--HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108 (264)
Q Consensus 31 ~d~~~~~~~~~~~~~~~~~--h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 108 (264)
.++.+..++.......+.. ....+.+++++++|+..++...++.|..++.+ +... ..........+..+++.+++
T Consensus 81 ~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~-~~~~~~~~~~~~~i~~d~~g 157 (300)
T 2qc5_A 81 GANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GTIY-EYDLPNKGSYPAFITLGSDN 157 (300)
T ss_dssp TTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEE-EEECSSTTCCEEEEEECTTS
T ss_pred CCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC--CCEE-EccCCCCCCCceeEEECCCC
Confidence 3555666654433333322 34678999999999887776667888888653 3222 11122234567888888755
Q ss_pred CCeEEEEeCCCcEEEEECCCCCcce----------EEEeecCCCc----------EEEEEeccCCCccceEEEeccccce
Q psy9316 109 PDLLSTASGDKTVRIWDARTQKSQI----------MLASGSFDKS----------VAIFALDKKGDLNKEVVYRGHTGSV 168 (264)
Q Consensus 109 ~~~l~s~s~dg~i~vwd~~~~~~~~----------~~~~~~~d~~----------i~i~~~~~~~~~~~~~~~~~h~~~i 168 (264)
++.++...++.|..+|.. ++... .-+.-..++. |..++. .+.... .....+...+
T Consensus 158 -~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~--~g~~~~-~~~~~~~~~~ 232 (300)
T 2qc5_A 158 -ALWFTENQNNSIGRITNT-GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT--TGEISE-YDIPTPNARP 232 (300)
T ss_dssp -SEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT--TCCEEE-EECSSTTCCE
T ss_pred -CEEEEecCCCeEEEECCC-CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC--CCcEEE-EECCCCCCCc
Confidence 466555557888888873 22111 0011112333 333332 222111 1112234457
Q ss_pred eeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee---cCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 169 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT---KGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 169 ~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~---~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
..+++.+.+ .++++...++.|..||.. +....... ...+.+++++++|+.+++.. + .|..+|..
T Consensus 233 ~~i~~d~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 233 HAITAGKNS-EIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred eEEEECCCC-CEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 788888754 576666667999999984 43322212 23467899999999776665 5 77777753
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00043 Score=58.46 Aligned_cols=203 Identities=13% Similarity=0.121 Sum_probs=109.6
Q ss_pred EeecCCCeeEEEeecCceEEeccccc-cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe-c
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHN-DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR-G 94 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~-~ 94 (264)
.+.|.+..+..+...++.+..|+... ..+.+ .....+.++.|+++|+++++. .+ .|.+|+... +......... .
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~-g~~~~~~~~~~~ 130 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT-GVLTLHAELESD 130 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT-CCEEEEECSSTT
T ss_pred eEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC-CcEEEEeeCCCC
Confidence 34554444444444456666665432 22333 234679999999999877754 44 488887643 2221110000 0
Q ss_pred -ccccEEeEEEecCCCCeEEEEeC------CCcEEEEECCCCCcc-------------------eEEEeecCCCcEEEEE
Q psy9316 95 -HTGSVDQLCWHATNPDLLSTASG------DKTVRIWDARTQKSQ-------------------IMLASGSFDKSVAIFA 148 (264)
Q Consensus 95 -h~~~v~~i~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~-------------------~~~~~~~~d~~i~i~~ 148 (264)
....+.++.++|++ ++.++... .+.|..+| .++.. .++++...++.|.+|+
T Consensus 131 ~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d 207 (326)
T 2ghs_A 131 LPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP 207 (326)
T ss_dssp CTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred CCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEE
Confidence 12357889999865 45544332 24455555 22211 1223333455677777
Q ss_pred ec-cCC-CccceEEE---eccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeec-CceEEEEEc-CCCCEE
Q psy9316 149 LD-KKG-DLNKEVVY---RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK-GENINITWA-PNGNTI 221 (264)
Q Consensus 149 ~~-~~~-~~~~~~~~---~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~-~~~~~v~~s-p~g~~l 221 (264)
.+ ..+ .......+ .........+++.+++ .++++...++.|..||...+........ ..+.+++|+ |+++.|
T Consensus 208 ~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L 286 (326)
T 2ghs_A 208 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRL 286 (326)
T ss_dssp BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred cccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEE
Confidence 64 222 22111111 1223345678887654 5766666678999999854332222222 357889998 898877
Q ss_pred EEeeCC
Q psy9316 222 AVGNKE 227 (264)
Q Consensus 222 a~gs~d 227 (264)
.+++..
T Consensus 287 ~vt~~~ 292 (326)
T 2ghs_A 287 LVTSAR 292 (326)
T ss_dssp EEEEBC
T ss_pred EEEecC
Confidence 555443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.2e-05 Score=72.50 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=91.7
Q ss_pred cCCCCEEEEEECCCCCeEEEEE-----CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCc---
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGS-----FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT--- 120 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s-----~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~--- 120 (264)
+|...+..++|||||++|+-+. .+.+|+++|+.... ... ..+. ......++|+ ++ +.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-~~~-~~~~--~~k~~~~~Ws-Dg-~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-PLE-TPLK--DVKFSGISWL-GN-EGFFYSSYDKPDGS 199 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-EEE-EEEE--EEESCCCEEE-TT-TEEEEEESSCCC--
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC-CCc-cccC--CceeccEEEe-CC-CEEEEEEecCcccc
Confidence 3555788999999999988543 23469999987532 111 1111 1112467898 55 45555665532
Q ss_pred ----------EEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEec-cccceeeEEEcCCCCCEEEEEeC---
Q psy9316 121 ----------VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG-HTGSVDQLCWHATNPDLLSTASG--- 186 (264)
Q Consensus 121 ----------i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~-h~~~i~~i~~~~~~~~~i~s~~~--- 186 (264)
|++|++.+......+ ++ .... |...+..+.|+|++..++++.+.
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~----------v~------------~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 257 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRL----------VF------------GAIPAQHHRYVGATVTEDDRFLLISAANSTS 257 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEE----------EE------------SCSGGGCCSEEEEEECTTSCEEEEEEESSSS
T ss_pred cccccCCCcEEEEEECCCCcccceE----------EE------------ecCCCCCeEEEEEEEcCCCCEEEEEEccCCC
Confidence 556665443221110 01 0112 33345678899876656555543
Q ss_pred CCcEEEEeCCCCc--ceeEeec-CceEEEEEcCCCCEEEEeeCC----CeEEEEEcccC
Q psy9316 187 DKTVRIWDARTQK--SQIIATK-GENINITWAPNGNTIAVGNKE----DLVTFIDVVKS 238 (264)
Q Consensus 187 dg~i~iwD~~t~~--~~~~~~~-~~~~~v~~sp~g~~la~gs~d----~~i~~~d~~~~ 238 (264)
.+.|+++|+.+.. ....... ...... |+++|..|+..+.. ..|..+|+.++
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~ 315 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP 315 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred CcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 3589999998764 2222222 223333 77888877665543 56889998764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00061 Score=56.63 Aligned_cols=175 Identities=11% Similarity=0.060 Sum_probs=106.8
Q ss_pred CEEEEEECCCCC-eEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc
Q psy9316 53 KVHSVAWSCDGR-RLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 131 (264)
Q Consensus 53 ~V~~l~~s~~g~-~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~ 131 (264)
-..+..|+++.. .+++...++.|..|+... +.. ..+ .....+.++++++++ ++++ +. +..|.+||.++++.
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~-~~~---~~~-~~~~~~~~i~~~~dG-~l~v-~~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFT-KQV---QRV-TMDAPVSSVALRQSG-GYVA-TI-GTKFCALNWKEQSA 85 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTT-CCE---EEE-ECSSCEEEEEEBTTS-SEEE-EE-TTEEEEEETTTTEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCC-CcE---EEE-eCCCceEEEEECCCC-CEEE-EE-CCeEEEEECCCCcE
Confidence 456788999655 555555678999998753 221 122 234678899999866 4544 34 56788999876542
Q ss_pred ceEE-------------EeecCCCcEE-------------------EEEeccCCCccceEEEeccccceeeEEEcCCCCC
Q psy9316 132 QIML-------------ASGSFDKSVA-------------------IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD 179 (264)
Q Consensus 132 ~~~~-------------~~~~~d~~i~-------------------i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~ 179 (264)
..+. +..+.+|.+. +|.++..+... ....+....+.++|+|++..
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~---~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK---KYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE---EEEEEESBEEEEEECTTSCE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE---EEeeccccccceEEcCCCCE
Confidence 2111 1112334333 33332222111 11122234567999997666
Q ss_pred EEEEEeCCCcEEEEeC--CCCcce---eEe----ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 180 LLSTASGDKTVRIWDA--RTQKSQ---IIA----TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 180 ~i~s~~~dg~i~iwD~--~t~~~~---~~~----~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
++++.+.++.|.+||+ .++... ... ..+.+..++++++|+++++...++.|..||..++
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence 6677777899999987 444321 111 1234678999999998888888899999997643
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.3e-05 Score=64.16 Aligned_cols=162 Identities=10% Similarity=0.023 Sum_probs=97.0
Q ss_pred CCEEEEEECCCCCeEEEEE--CCCcEEEEEeccCCCCccc----EEEecccccEEeEEEecCCCCeEEEEeC-----CCc
Q psy9316 52 SKVHSVAWSCDGRRLASGS--FDKSVAIFALDKKGDLNKE----VVYRGHTGSVDQLCWHATNPDLLSTASG-----DKT 120 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s--~dg~i~v~~~~~~~~~~~~----~~~~~h~~~v~~i~~~~~~~~~l~s~s~-----dg~ 120 (264)
..+..++++++|+.+++.. .++.+++|.++ .+..... .....+-..+..+++++++ ++.++-+. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCeecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCCe
Confidence 6789999999999888864 23435666665 2321100 0011345678999998764 44444332 578
Q ss_pred EEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEe---CCCcEEEEeCCC
Q psy9316 121 VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS---GDKTVRIWDART 197 (264)
Q Consensus 121 i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~---~dg~i~iwD~~t 197 (264)
|.+||+++++... .+.+... . ..+....+.+++++.++.++++.. .++.|.+||+.+
T Consensus 95 i~~~d~~tg~~~~------------~~~~~~~--~------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~ 154 (343)
T 2qe8_A 95 LVAWDTLNNQLSR------------VIYLPPP--I------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT 154 (343)
T ss_dssp EEEEETTTTEEEE------------EEECCTT--T------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred EEEEECCCCeEEE------------EEECChh--h------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence 8999987654221 1221100 0 012234577888875555666665 688999999986
Q ss_pred CcceeEee-------------------------------cCceEEEEEcCCCCEEEEeeCCC-eEEEEEc
Q psy9316 198 QKSQIIAT-------------------------------KGENINITWAPNGNTIAVGNKED-LVTFIDV 235 (264)
Q Consensus 198 ~~~~~~~~-------------------------------~~~~~~v~~sp~g~~la~gs~d~-~i~~~d~ 235 (264)
++...... ...+..++|+|+|+.|.++..++ .++.++.
T Consensus 155 g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 155 GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 64321110 01246799999999888876655 6666654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0017 Score=56.17 Aligned_cols=197 Identities=10% Similarity=-0.070 Sum_probs=105.5
Q ss_pred eEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEE----------CCCcEEEEEeccCCCCcccEEEe--cc---c
Q psy9316 34 YVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGS----------FDKSVAIFALDKKGDLNKEVVYR--GH---T 96 (264)
Q Consensus 34 ~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s----------~dg~i~v~~~~~~~~~~~~~~~~--~h---~ 96 (264)
.+..++. .+.+.++..-..+ .+.++|||++|+.+. .++.|.+||......... .... .+ .
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~-i~~~~~~~~~~g 124 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD-IELPDAPRFDVG 124 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEE-EECCCccccccC
Confidence 4444443 3444444332233 899999999999886 367899998754221111 1010 00 1
Q ss_pred ccEEeEEEecCCCCeEEEEeC--CCcEEEEECCCCCcceE-E----------------EeecCCCcEEEEEeccCCCccc
Q psy9316 97 GSVDQLCWHATNPDLLSTASG--DKTVRIWDARTQKSQIM-L----------------ASGSFDKSVAIFALDKKGDLNK 157 (264)
Q Consensus 97 ~~v~~i~~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~-~----------------~~~~~d~~i~i~~~~~~~~~~~ 157 (264)
.....+.|+|++ ++++.++. ++.|.++| .+++.... + ++.+.|+.+..++. .......
T Consensus 125 ~~p~~~~~spDG-~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 125 PYSWMNANTPNN-ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred CCccceEECCCC-CEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 224477899966 45555553 57899999 87654322 2 22335666666665 2221100
Q ss_pred eEE--Eeccccce-eeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--------------ecCceEEEEEcCCCCE
Q psy9316 158 EVV--YRGHTGSV-DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--------------TKGENINITWAPNGNT 220 (264)
Q Consensus 158 ~~~--~~~h~~~i-~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--------------~~~~~~~v~~sp~g~~ 220 (264)
... ......++ ....+.+.+..+++. +..+.+.+.|+.+....... .+....-++++|+++.
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 000 00001111 112334444444443 36789999999765422111 0112233788999998
Q ss_pred EEEeeC----------CCeEEEEEccc
Q psy9316 221 IAVGNK----------EDLVTFIDVVK 237 (264)
Q Consensus 221 la~gs~----------d~~i~~~d~~~ 237 (264)
+.++.. ++.|.++|+.+
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t 307 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLV 307 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCC
Confidence 877653 35799999764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0014 Score=54.09 Aligned_cols=177 Identities=11% Similarity=0.056 Sum_probs=108.6
Q ss_pred CceEeecCCCeeEEEeecCceEEeccc-cccccccccC-CCCEEEEEECCCCCeEEEEEC-CCcEEEEEeccCCCCcccE
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNT-HNDIKEYQAH-GSKVHSVAWSCDGRRLASGSF-DKSVAIFALDKKGDLNKEV 90 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~h-~~~V~~l~~s~~g~~l~s~s~-dg~i~v~~~~~~~~~~~~~ 90 (264)
....++|.|. +.+ +.++.+..++. ++.+.++..+ ...+.++.+.++|+.+++.+. ++.+..++ ..+......
T Consensus 40 ~~~~~~pdG~-ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd--~~Gk~l~~~ 114 (276)
T 3no2_A 40 NSVAATKAGE-ILF--SYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVN--MKGEVLSKT 114 (276)
T ss_dssp CEEEECTTSC-EEE--ECBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEEC--TTSCEEEEE
T ss_pred cCeEECCCCC-EEE--eCCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEe--CCCCEEEEE
Confidence 3446667663 333 44666666654 4555566654 347889999999999999876 55555554 334322111
Q ss_pred EEe----cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEecccc
Q psy9316 91 VYR----GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166 (264)
Q Consensus 91 ~~~----~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~ 166 (264)
.+. .+......+...+ +++++++...++.|..||.+ ++. +|..... .
T Consensus 115 ~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~--------------~w~~~~~-------------~ 165 (276)
T 3no2_A 115 EFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQL--------------LNSVKLS-------------G 165 (276)
T ss_dssp EECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SCE--------------EEEEECS-------------S
T ss_pred eccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-CCE--------------EEEEECC-------------C
Confidence 111 1222334445565 44788888889999999987 553 2332211 1
Q ss_pred ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeec--------CceEEEEEcCCCCEEEEee
Q psy9316 167 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK--------GENINITWAPNGNTIAVGN 225 (264)
Q Consensus 167 ~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~--------~~~~~v~~sp~g~~la~gs 225 (264)
....+...+ ++.++++++.++.|..+|..+++..-.... ..+..+...++|+.+++..
T Consensus 166 ~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 166 TPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 122344445 456777778888999999998875333321 1256778889999998875
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00014 Score=61.97 Aligned_cols=178 Identities=10% Similarity=0.018 Sum_probs=99.1
Q ss_pred cCCCCEEEEEECCCCCeEEEEEC-----CCcEEEEEeccCCCCcccEEEe----cccccEEeEEEecCCCCeEEEEe---
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGSF-----DKSVAIFALDKKGDLNKEVVYR----GHTGSVDQLCWHATNPDLLSTAS--- 116 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s~-----dg~i~v~~~~~~~~~~~~~~~~----~h~~~v~~i~~~~~~~~~l~s~s--- 116 (264)
.|-..+..++++++++..++-.. +..|.+||+.. +.......+. .+...+..+.+++.++...++..
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD 142 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC-CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence 34567999999999876555432 57899998754 2211111111 12234678888876555555555
Q ss_pred CCCcEEEEECCCCCcceEEEee--c--CC-CcE-----EEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeC
Q psy9316 117 GDKTVRIWDARTQKSQIMLASG--S--FD-KSV-----AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG 186 (264)
Q Consensus 117 ~dg~i~vwd~~~~~~~~~~~~~--~--~d-~~i-----~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~ 186 (264)
.++.|.+||+.+++....+ .+ + .+ ..+ .++.....+.. ..-...++.|+|+|++ ..+..+..
T Consensus 143 ~~~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~------~~~~~~~~gia~s~dg-~~ly~~~~ 214 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTV------IRPHLGVNGIVLDAEN-EWLYLSPM 214 (343)
T ss_dssp GGCEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCE------ECCCCCEEEEEECTTS-CEEEEEES
T ss_pred CCCeEEEEECCCCCEEEEe-cCCCcccccccceeECCEEEEeccCCCce------eceecccceeEeccCC-CEEEEEeC
Confidence 6789999999866532211 11 0 00 000 00000000000 0011246789999865 44444454
Q ss_pred CC-cEEEEeCC---CCc---------ceeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q psy9316 187 DK-TVRIWDAR---TQK---------SQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 187 dg-~i~iwD~~---t~~---------~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~ 235 (264)
++ .+..+|.. ... .......+.+..++++++|+.+++...++.|..||.
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 44 55555432 110 011112334557999999999999999999999997
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00054 Score=59.56 Aligned_cols=199 Identities=11% Similarity=-0.015 Sum_probs=115.9
Q ss_pred CceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEE----------CCCcEEEEEeccCCCCcccEEEec--c--
Q psy9316 32 DDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGS----------FDKSVAIFALDKKGDLNKEVVYRG--H-- 95 (264)
Q Consensus 32 d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s----------~dg~i~v~~~~~~~~~~~~~~~~~--h-- 95 (264)
++.+..++. .+.+.++..-..+ . +.++|||++++.+. .++.|.+||..+.... ....... +
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~-~~I~v~~g~r~~ 134 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT-ADIELPDAPRFL 134 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE-EEEEETTCCCCC
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE-EEEECCCccccc
Confidence 456666654 3444455433334 4 99999999998875 3578999997653221 1111110 0
Q ss_pred -cccEEeEEEecCCCCeEEEEeC--CCcEEEEECCCCCcce----------------EEEeecCCCcEEEEEeccCCCcc
Q psy9316 96 -TGSVDQLCWHATNPDLLSTASG--DKTVRIWDARTQKSQI----------------MLASGSFDKSVAIFALDKKGDLN 156 (264)
Q Consensus 96 -~~~v~~i~~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~----------------~~~~~~~d~~i~i~~~~~~~~~~ 156 (264)
......+.++|++ +++..+.. ++.|.++|+.+.+... .+++.+.||.+.+.++...+...
T Consensus 135 ~g~~P~~~a~spDG-k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 135 VGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp BSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred cCCCCceEEEcCCC-CEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEE
Confidence 1134567889876 45555553 6899999998875322 23456678888888876533331
Q ss_pred ceEEEeccc----ccee-eEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE--e------------ecCceEEEEEcCC
Q psy9316 157 KEVVYRGHT----GSVD-QLCWHATNPDLLSTASGDKTVRIWDARTQKSQII--A------------TKGENINITWAPN 217 (264)
Q Consensus 157 ~~~~~~~h~----~~i~-~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~--~------------~~~~~~~v~~sp~ 217 (264)
. ....+. .++. ...|.+.++.++. .+.+|.+++.|+.+...... . .++....++++|+
T Consensus 214 ~--~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~ 290 (386)
T 3sjl_D 214 I--THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 290 (386)
T ss_dssp E--EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred E--eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC
Confidence 1 111111 1221 1344333444433 45689999999987643211 0 0122234778999
Q ss_pred CCEEEEeeC----------CCeEEEEEccc
Q psy9316 218 GNTIAVGNK----------EDLVTFIDVVK 237 (264)
Q Consensus 218 g~~la~gs~----------d~~i~~~d~~~ 237 (264)
++.+.+... .+.|.++|+.+
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t 320 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKT 320 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCC
Confidence 998877653 35789999765
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0024 Score=53.86 Aligned_cols=171 Identities=12% Similarity=0.068 Sum_probs=100.8
Q ss_pred EEEEEECCCCCe-EEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc
Q psy9316 54 VHSVAWSCDGRR-LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 132 (264)
Q Consensus 54 V~~l~~s~~g~~-l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 132 (264)
.....|+|+++. +++...++.|..|+... +.. ..+. ....+.++.|.+++ ++++ ++.++ |.+||.++++..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~-~~~---~~~~-~~~~v~~i~~~~dg-~l~v-~~~~g-l~~~d~~~g~~~ 122 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS-GRK---TVHA-LPFMGSALAKISDS-KQLI-ASDDG-LFLRDTATGVLT 122 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT-TEE---EEEE-CSSCEEEEEEEETT-EEEE-EETTE-EEEEETTTCCEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC-CcE---EEEE-CCCcceEEEEeCCC-eEEE-EECCC-EEEEECCCCcEE
Confidence 467889997554 45555678899998653 211 1222 34568899998865 4554 44444 888998765421
Q ss_pred eEE-------------EeecCCCcE--------------EEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEe
Q psy9316 133 IML-------------ASGSFDKSV--------------AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS 185 (264)
Q Consensus 133 ~~~-------------~~~~~d~~i--------------~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~ 185 (264)
.+. +..+.+|.+ .||.++ .+... .+..+....+.++|+|++..++++.+
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~---~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVT---KLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEE---EEEEEESSEEEEEECTTSCEEEEEET
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEE---EeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 110 111223332 233332 11111 11122234567899987655666666
Q ss_pred CCCcEEEEeCC--CC-cc---eeEe-e---cCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 186 GDKTVRIWDAR--TQ-KS---QIIA-T---KGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 186 ~dg~i~iwD~~--t~-~~---~~~~-~---~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.++.|.+||+. ++ .. .... . ...+..++++++|+++++...++.|..||..
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 78899999986 54 31 1111 1 2345678999999988877777889999873
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0032 Score=55.65 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=95.2
Q ss_pred EEEEEECCCCCeEEEEECC------CcEEEEEeccCCCCcccEEEe--ccc-ccEEeEEEecCCCCeEEEEe--------
Q psy9316 54 VHSVAWSCDGRRLASGSFD------KSVAIFALDKKGDLNKEVVYR--GHT-GSVDQLCWHATNPDLLSTAS-------- 116 (264)
Q Consensus 54 V~~l~~s~~g~~l~s~s~d------g~i~v~~~~~~~~~~~~~~~~--~h~-~~v~~i~~~~~~~~~l~s~s-------- 116 (264)
-..+...|+| .++++..+ +.|.++|..+.. .. ..+. ... ..-.++-|+|.. +.++++.
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~-v~--~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~ 214 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE-PL--GKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIE 214 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC-EE--EECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHT
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe-EE--EEEccCCCCccccceEEECCCC-CEEEEccCcCccccc
Confidence 4456778999 66665444 678888765321 11 1222 111 223456778855 5676664
Q ss_pred -----------CCCcEEEEECCCCCcceEE------------------------Eeec-----CCCcEEEEEeccCCCcc
Q psy9316 117 -----------GDKTVRIWDARTQKSQIML------------------------ASGS-----FDKSVAIFALDKKGDLN 156 (264)
Q Consensus 117 -----------~dg~i~vwd~~~~~~~~~~------------------------~~~~-----~d~~i~i~~~~~~~~~~ 156 (264)
.+.+|.+||+.+++....+ ++.. .+++|.+|..+. +.+.
T Consensus 215 ~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~ 293 (462)
T 2ece_A 215 DGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWN 293 (462)
T ss_dssp TCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEE
T ss_pred cccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-Ccee
Confidence 3789999999875422222 1222 334444443322 2111
Q ss_pred ceEEE--ecc----------------ccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCC-ccee--EeecC--------
Q psy9316 157 KEVVY--RGH----------------TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ-KSQI--IATKG-------- 207 (264)
Q Consensus 157 ~~~~~--~~h----------------~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~-~~~~--~~~~~-------- 207 (264)
..... ... ......|.++|++..+.+|.-..+.|.+||+... ...+ ....+
T Consensus 294 ~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~ 373 (462)
T 2ece_A 294 AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADH 373 (462)
T ss_dssp EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCC
T ss_pred EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccc
Confidence 11110 000 1245678899988777888888999999998632 2211 11122
Q ss_pred --------ceEEEEEcCCCCEEEEee
Q psy9316 208 --------ENINITWAPNGNTIAVGN 225 (264)
Q Consensus 208 --------~~~~v~~sp~g~~la~gs 225 (264)
....++++|||++|.++.
T Consensus 374 ~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 374 PAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cccccCCCCCCEEEEcCCCCEEEEEc
Confidence 256799999999999888
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0079 Score=49.45 Aligned_cols=179 Identities=11% Similarity=0.008 Sum_probs=104.0
Q ss_pred CEEEEEECCCCCeEEEEEC--CCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 53 KVHSVAWSCDGRRLASGSF--DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~--dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
....|.|++++...++.+. ++.|.++|+.+. .......+..+ .....+.+. ++++.++.-.++.+.++|..+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg-~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTG-KVENIHKMDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTC-CEEEEEECCTT-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCC-CEEEEEecCCC-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence 4689999998654444443 578999998753 22221112121 223345554 44455555568999999998754
Q ss_pred cceEEEee-----------------cCCCcEEEEEeccCCCccceEEEecc---ccceeeEEEcCCCCCEEEEEeCCCcE
Q psy9316 131 SQIMLASG-----------------SFDKSVAIFALDKKGDLNKEVVYRGH---TGSVDQLCWHATNPDLLSTASGDKTV 190 (264)
Q Consensus 131 ~~~~~~~~-----------------~~d~~i~i~~~~~~~~~~~~~~~~~h---~~~i~~i~~~~~~~~~i~s~~~dg~i 190 (264)
....+..+ ..++.+.++|......... ...... ....+.+.|. ++.++++.-.++.|
T Consensus 98 v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~-I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 98 NIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKK-HNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEE-EECEETTEECCCEEEEEEE--TTEEEEEETTSSEE
T ss_pred EEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEE-EEECCCCcccccceeEEEE--CCEEEEecCCCCeE
Confidence 33222211 1233444444322111111 111111 1135667776 34666766678999
Q ss_pred EEEeCCCCcceeEe-ec--------------CceEEEEEcCCCC-EEEEeeCCCeEEEEEcccC
Q psy9316 191 RIWDARTQKSQIIA-TK--------------GENINITWAPNGN-TIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 191 ~iwD~~t~~~~~~~-~~--------------~~~~~v~~sp~g~-~la~gs~d~~i~~~d~~~~ 238 (264)
.+-|..+++..... .. .....++|+|+++ .++++...+.++..++.+.
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 99999998753222 11 1347899999986 4567778999999998864
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0092 Score=48.41 Aligned_cols=157 Identities=11% Similarity=0.113 Sum_probs=95.9
Q ss_pred CCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 52 SKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
..+..++|+++++.|+.+. .++.|.+++.+.. .. . ............+++++.++.+.++-...+.|.++|++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~-~-~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 112 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG-EP-T-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ 112 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSC-CC-E-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCC-Cc-E-EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC
Confidence 3568999999877776655 4678999987532 11 1 22222224567888888665566555567788888876422
Q ss_pred cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeC--CCcEEEEeCCCCcceeEee--c
Q psy9316 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG--DKTVRIWDARTQKSQIIAT--K 206 (264)
Q Consensus 131 ~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~--dg~i~iwD~~t~~~~~~~~--~ 206 (264)
.. .+.. .....-..++++|.++.++++... .+.|..+++.......... .
T Consensus 113 ~~-~~~~-------------------------~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~ 166 (267)
T 1npe_A 113 RR-VLFD-------------------------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNL 166 (267)
T ss_dssp CE-EEEC-------------------------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTC
T ss_pred EE-EEEE-------------------------CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCC
Confidence 11 1100 001223567888765556555443 4688888887544332221 2
Q ss_pred CceEEEEEcCCCCEE-EEeeCCCeEEEEEccc
Q psy9316 207 GENINITWAPNGNTI-AVGNKEDLVTFIDVVK 237 (264)
Q Consensus 207 ~~~~~v~~sp~g~~l-a~gs~d~~i~~~d~~~ 237 (264)
..+..++++|++..| ++-...+.|..+|...
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence 346789999987655 5555678899999753
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0052 Score=50.32 Aligned_cols=173 Identities=11% Similarity=0.160 Sum_probs=96.0
Q ss_pred ccccccCC--CCEEEEEECCCCCeEEEEECCC--cEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCC
Q psy9316 44 IKEYQAHG--SKVHSVAWSCDGRRLASGSFDK--SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 119 (264)
Q Consensus 44 ~~~~~~h~--~~V~~l~~s~~g~~l~s~s~dg--~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg 119 (264)
+++| .|. .....|.|+ ++....+.+.+| .|+++|+.+. +......+.. ......+... ++++....-.++
T Consensus 34 v~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tg-kv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~ 107 (262)
T 3nol_A 34 VHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESG-KTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNG 107 (262)
T ss_dssp EEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTC-CEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSS
T ss_pred EEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCC-cEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCC
Confidence 4445 444 345788998 676666777776 8999988653 3222111211 1112334443 444555555689
Q ss_pred cEEEEECCCCCcceE-----------------EEeecCCCcEEEEEeccCCCccceEE-Eeccc-cceeeEEEcCCCCCE
Q psy9316 120 TVRIWDARTQKSQIM-----------------LASGSFDKSVAIFALDKKGDLNKEVV-YRGHT-GSVDQLCWHATNPDL 180 (264)
Q Consensus 120 ~i~vwd~~~~~~~~~-----------------~~~~~~d~~i~i~~~~~~~~~~~~~~-~~~h~-~~i~~i~~~~~~~~~ 180 (264)
.+.+||.++.+.... +++ ..+..|.++|............ ..+.. ..++.+.|. ++.+
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~l 184 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEI 184 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCCEEECSSCEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEE
T ss_pred EEEEEECccCcEEEEEECCCCceEEecCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEE
Confidence 999999987653322 222 2234455554332221111111 11111 335567775 4567
Q ss_pred EEEEeCCCcEEEEeCCCCcceeEeec--------------CceEEEEEcCCCCEEEEee
Q psy9316 181 LSTASGDKTVRIWDARTQKSQIIATK--------------GENINITWAPNGNTIAVGN 225 (264)
Q Consensus 181 i~s~~~dg~i~iwD~~t~~~~~~~~~--------------~~~~~v~~sp~g~~la~gs 225 (264)
++..-.++.|.+.|.++++....... ...+.|+|+|+++.|.+.+
T Consensus 185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 77666788999999999885322111 1246799999887765555
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0049 Score=54.46 Aligned_cols=176 Identities=10% Similarity=0.028 Sum_probs=99.4
Q ss_pred EC--CCCCeEEEE-ECCCcEEEEEeccCCC-CcccEEEe------cc-cccEEeEEEecCCCCeEEEEeCC------CcE
Q psy9316 59 WS--CDGRRLASG-SFDKSVAIFALDKKGD-LNKEVVYR------GH-TGSVDQLCWHATNPDLLSTASGD------KTV 121 (264)
Q Consensus 59 ~s--~~g~~l~s~-s~dg~i~v~~~~~~~~-~~~~~~~~------~h-~~~v~~i~~~~~~~~~l~s~s~d------g~i 121 (264)
++ +++++|+.. ..++.|.++|+..... .....+++ .. ...-..+...|++ ++++...+ |.+
T Consensus 89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 89 GKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEE
T ss_pred cCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeE
Confidence 36 788887765 4678899999864322 22222221 00 1123445566755 66655555 789
Q ss_pred EEEECCCCCcc----------------------eEEEee-------------------cCCCcEEEEEeccCCCccceEE
Q psy9316 122 RIWDARTQKSQ----------------------IMLASG-------------------SFDKSVAIFALDKKGDLNKEVV 160 (264)
Q Consensus 122 ~vwd~~~~~~~----------------------~~~~~~-------------------~~d~~i~i~~~~~~~~~~~~~~ 160 (264)
.++|.++.+.. ..+++. .++..|.+|++... .......
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~tI~ 245 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHSLT 245 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEEEE
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeEEe
Confidence 99998764311 123333 24678999998653 2111111
Q ss_pred EeccccceeeEEE--cCCCCCEEEEEe-----CCCcEEEEeCCCCcceeEe-----e-----------------cCceEE
Q psy9316 161 YRGHTGSVDQLCW--HATNPDLLSTAS-----GDKTVRIWDARTQKSQIIA-----T-----------------KGENIN 211 (264)
Q Consensus 161 ~~~h~~~i~~i~~--~~~~~~~i~s~~-----~dg~i~iwD~~t~~~~~~~-----~-----------------~~~~~~ 211 (264)
.......-..+.| +|++...++++- .+++|.+|....+...... . ...+..
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 1101112223444 887665566655 7788887655443211100 0 123457
Q ss_pred EEEcCCCCEEEEee-CCCeEEEEEccc
Q psy9316 212 ITWAPNGNTIAVGN-KEDLVTFIDVVK 237 (264)
Q Consensus 212 v~~sp~g~~la~gs-~d~~i~~~d~~~ 237 (264)
|.+||||++|.++. ..+.|.+||+.+
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 89999999986664 478999999864
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.59 E-value=2.7e-05 Score=67.38 Aligned_cols=126 Identities=15% Similarity=0.095 Sum_probs=64.6
Q ss_pred CCeEEEEeCCCcEEEEECCCCCcce-----------------EEEeecCCCcEEEEEeccCCCccceEEEecccc-ceee
Q psy9316 109 PDLLSTASGDKTVRIWDARTQKSQI-----------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG-SVDQ 170 (264)
Q Consensus 109 ~~~l~s~s~dg~i~vwd~~~~~~~~-----------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~-~i~~ 170 (264)
+..+++++.||.++.||.++++... .++.++.|+.+..|+......... +..+.. .+..
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~---~~~~~~~~~~~ 85 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK---LPFTIPELVQA 85 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCSEE---CSCCHHHHHTT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCceeee---eeccCcccccc
Confidence 3577888999999999988765321 345557788888888654332211 111111 1100
Q ss_pred EEEcCC--CCCEEEEEeCCCcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 171 LCWHAT--NPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 171 i~~~~~--~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
+|. ....+++++.|+.++.||.++++..-...... ...++|++..+++++.|+.++.||+.++...+
T Consensus 86 ---sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 86 ---SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp ---CSCC-----CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred ---CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 110 23456678889999999999987533222211 24567889999999999999999988765543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.023 Score=46.31 Aligned_cols=183 Identities=9% Similarity=0.127 Sum_probs=104.2
Q ss_pred ccccCCCCEEEEEECCCCCeEEEE-ECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEE
Q psy9316 46 EYQAHGSKVHSVAWSCDGRRLASG-SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124 (264)
Q Consensus 46 ~~~~h~~~V~~l~~s~~g~~l~s~-s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vw 124 (264)
.+.+-.+.+..|+|+|+++.|++. ..++.|...|.. +.......+.+ ....-.+++.+.+ .++++.-.++.+.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~l~g-~~D~EGIa~~~~g-~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIPLDF-VKDLETIEYIGDN-QFVISDERDYAIYVI 96 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEECSS-CSSEEEEEECSTT-EEEEEETTTTEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEecCC-CCChHHeEEeCCC-EEEEEECCCCcEEEE
Confidence 344555679999999988877764 455566665543 43322211222 2456777777533 455554457777777
Q ss_pred ECCCCCcce----------------------------EEEeecCCCcEEEEEecc--CCCccceEEEe-------ccccc
Q psy9316 125 DARTQKSQI----------------------------MLASGSFDKSVAIFALDK--KGDLNKEVVYR-------GHTGS 167 (264)
Q Consensus 125 d~~~~~~~~----------------------------~~~~~~~d~~i~i~~~~~--~~~~~~~~~~~-------~h~~~ 167 (264)
++....... .+.++.......+|.++- .+. ...... .+...
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~--~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN--ELHISKDKALQRQFTLDD 174 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS--CCEEEECHHHHHTCCSSC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC--ceeeecchhhccccccCC
Confidence 664322100 011111112233444320 000 000110 11234
Q ss_pred eeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeec----------CceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q psy9316 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK----------GENINITWAPNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 168 i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~----------~~~~~v~~sp~g~~la~gs~d~~i~~~d~ 235 (264)
...++++|..+.+++.......+-++|...+........ .....|+|.|+|+.+++ +..+.++.|..
T Consensus 175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred ceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 678999998888888888899999999887644333322 14578999999985555 66778888763
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.038 Score=46.27 Aligned_cols=161 Identities=16% Similarity=0.060 Sum_probs=92.1
Q ss_pred CCCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCC-CcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCC
Q psy9316 51 GSKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGD-LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~ 128 (264)
-..+..++|+++++.|+-+. .++.|..++++.... ..........-.....+++++.++++.++-...+.|.+.|++.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34678999999776666554 457888888753100 0111122222234466777655555555555667777777653
Q ss_pred CCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCC-CcEEEEeCCCCcceeEee--
Q psy9316 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-KTVRIWDARTQKSQIIAT-- 205 (264)
Q Consensus 129 ~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~d-g~i~iwD~~t~~~~~~~~-- 205 (264)
.... .++ ......-..++..|.++.++.+.... +.|...++..........
T Consensus 109 ~~~~-~~~-------------------------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~ 162 (316)
T 1ijq_A 109 VKRK-TLF-------------------------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 162 (316)
T ss_dssp SSEE-EEE-------------------------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred CceE-EEE-------------------------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECC
Confidence 2211 110 00112335677777666666665443 788888887554332221
Q ss_pred cCceEEEEEcCCCCEE-EEeeCCCeEEEEEccc
Q psy9316 206 KGENINITWAPNGNTI-AVGNKEDLVTFIDVVK 237 (264)
Q Consensus 206 ~~~~~~v~~sp~g~~l-a~gs~d~~i~~~d~~~ 237 (264)
...+..++++|++..| .+-+..+.|..+|...
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 2357789999876655 4445677999999753
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.016 Score=47.49 Aligned_cols=172 Identities=13% Similarity=0.099 Sum_probs=98.0
Q ss_pred cccccccCC--CCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCc
Q psy9316 43 DIKEYQAHG--SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 120 (264)
Q Consensus 43 ~~~~~~~h~--~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~ 120 (264)
.+++| .|. .....|.|+ ++.+..+.+.+|.|+++|+.+... .... +.. ......+.. .++++....-.++.
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv-~~~~-l~~-~~FgeGit~--~g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQP-VWME-RLG-NIFAEGLAS--DGERLYQLTWTEGL 117 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSC-SEEE-ECT-TCCEEEEEE--CSSCEEEEESSSCE
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcE-EeEE-CCC-CcceeEEEE--eCCEEEEEEccCCE
Confidence 34555 443 346788887 455666677888999999876433 3222 332 112233444 34556665567999
Q ss_pred EEEEECCCCCcce-----------------EEEeecCCCcEEEEEeccCCCccceEEEeccc---cceeeEEEcCCCCCE
Q psy9316 121 VRIWDARTQKSQI-----------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHT---GSVDQLCWHATNPDL 180 (264)
Q Consensus 121 i~vwd~~~~~~~~-----------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~---~~i~~i~~~~~~~~~ 180 (264)
+.+||.++.+... ++++ ..++.|.++|.......... ....+. ..++.+.|. ++.+
T Consensus 118 v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vS-dGs~~l~~iDp~T~~v~~~I-~V~~~g~~v~~lNeLe~~--dG~l 193 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRS-DGGTMLTFHEPDGFALVGAV-QVKLRGQPVELINELECA--NGVI 193 (268)
T ss_dssp EEEEETTTTEEEEEEECSSCCCCEEEETTEEEEE-CSSSEEEEECTTTCCEEEEE-ECEETTEECCCEEEEEEE--TTEE
T ss_pred EEEEECCcCcEEEEEeCCCceeEEecCCCEEEEE-CCCCEEEEEcCCCCeEEEEE-EeCCCCcccccccccEEe--CCEE
Confidence 9999998765322 2222 23455555554332211111 111121 234667775 4567
Q ss_pred EEEEeCCCcEEEEeCCCCcceeEee--------------c-CceEEEEEcCCCCEE-EEee
Q psy9316 181 LSTASGDKTVRIWDARTQKSQIIAT--------------K-GENINITWAPNGNTI-AVGN 225 (264)
Q Consensus 181 i~s~~~dg~i~iwD~~t~~~~~~~~--------------~-~~~~~v~~sp~g~~l-a~gs 225 (264)
++..-.++.|.+-|.++++...... . ...+.|+|+|+++.| ++|.
T Consensus 194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 7766678899999999987522111 0 134679999976655 5554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.036 Score=44.78 Aligned_cols=157 Identities=13% Similarity=0.105 Sum_probs=91.4
Q ss_pred CCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeC--CCcEEEEECCC
Q psy9316 52 SKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG--DKTVRIWDART 128 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~--dg~i~vwd~~~ 128 (264)
.....+++++++..|+.+. ..+.|.+++++. .... ............++++|.++.+.++... .+.|..++++.
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g--~~~~-~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--TQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCC--CCEE-EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 4678999999877666654 457888888653 2221 1122222456788888865544444332 35666666653
Q ss_pred CCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe-ecC
Q psy9316 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA-TKG 207 (264)
Q Consensus 129 ~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~-~~~ 207 (264)
.... .+. ......-..++++|+++.++++....+.|..+|+......... ...
T Consensus 156 ~~~~-~~~-------------------------~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~ 209 (267)
T 1npe_A 156 TNRR-ILA-------------------------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ 209 (267)
T ss_dssp CCCE-EEE-------------------------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC
T ss_pred CCcE-EEE-------------------------ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCC
Confidence 2111 110 0011234567888866667777777899999999865432222 223
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 208 ENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 208 ~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
.+..++.. .+..+++...++.|..+|..++
T Consensus 210 ~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 210 YPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp SEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred CceEEEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence 45566654 3444444456789999997643
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0087 Score=50.06 Aligned_cols=158 Identities=9% Similarity=0.061 Sum_probs=91.1
Q ss_pred EEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe------------------cccccEEeEEEecCCCCeEEEE
Q psy9316 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR------------------GHTGSVDQLCWHATNPDLLSTA 115 (264)
Q Consensus 54 V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~------------------~h~~~v~~i~~~~~~~~~l~s~ 115 (264)
..+++++++++++.++..++.|..|+... +... ..... .....+..+++.+.+++++ .+
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~-~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~ 97 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPN-SGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IV 97 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTT-TCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCC-CceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EE
Confidence 45688999998888888889998886542 1111 11100 0113467888876343444 44
Q ss_pred eCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcC-CCCCEEEEEeC--------
Q psy9316 116 SGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA-TNPDLLSTASG-------- 186 (264)
Q Consensus 116 s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~-~~~~~i~s~~~-------- 186 (264)
...+.+..+|.+++... .++.. .++ ......+.+++.+ ++ .+.++...
T Consensus 98 d~~~~i~~~d~~~g~~~-~~~~~-~~~--------------------~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHAT-QLATS-VDG--------------------VPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGV 154 (322)
T ss_dssp ETTTEEEEECTTCEECE-EEESE-ETT--------------------EECSCEEEEEECTTTC-CEEEEESCSSCCTTCH
T ss_pred ECCCCEEEEeCCCCEEE-Eeccc-CCC--------------------CcccccceEEEecCCC-EEEEECCccccccccc
Confidence 44445777776543211 11100 000 0012345677776 44 55554322
Q ss_pred ---------CCcEEEEeCCCCcceeEe-ecCceEEEEEcCCCCEEEEe-eCCCeEEEEEccc
Q psy9316 187 ---------DKTVRIWDARTQKSQIIA-TKGENINITWAPNGNTIAVG-NKEDLVTFIDVVK 237 (264)
Q Consensus 187 ---------dg~i~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~~la~g-s~d~~i~~~d~~~ 237 (264)
+|.|..||..+++..... .......++|+|+|+.|.++ +.++.|..||+..
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred ceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 367888998776543222 22445679999999966555 6678999999764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.065 Score=50.91 Aligned_cols=165 Identities=15% Similarity=0.051 Sum_probs=93.3
Q ss_pred cccCCCCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCC-CcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEE
Q psy9316 47 YQAHGSKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGD-LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124 (264)
Q Consensus 47 ~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vw 124 (264)
+......+..|+|++....|+-+. ..+.|..++++.... .....++.........|++.+.+.++.++-...+.|.+.
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 333445678999998666666544 456788887653211 111222332334456777776665666666667788888
Q ss_pred ECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCC-CcEEEEeCCCCcceeE
Q psy9316 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-KTVRIWDARTQKSQII 203 (264)
Q Consensus 125 d~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~d-g~i~iwD~~t~~~~~~ 203 (264)
+++..... .++. .....-..|++.|..+.++.+-... +.|...++........
T Consensus 499 ~ldG~~~~-~l~~-------------------------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 499 DTKGVKRK-TLFR-------------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp ETTSSSEE-EEEE-------------------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred eCCCCeEE-EEEe-------------------------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE
Confidence 87643211 1111 1112345677777655565554333 6788888876554333
Q ss_pred ee--cCceEEEEEcCCCCEEE-EeeCCCeEEEEEccc
Q psy9316 204 AT--KGENINITWAPNGNTIA-VGNKEDLVTFIDVVK 237 (264)
Q Consensus 204 ~~--~~~~~~v~~sp~g~~la-~gs~d~~i~~~d~~~ 237 (264)
.. ...+..|++++.+..|. +-...+.|..+|+..
T Consensus 553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 22 23577888887655554 445667788888653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.077 Score=43.93 Aligned_cols=193 Identities=10% Similarity=0.119 Sum_probs=99.8
Q ss_pred cCceEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCc--EEEEEeccCCCCcccEEEecccccEEeEEEecCC
Q psy9316 31 IDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKS--VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108 (264)
Q Consensus 31 ~d~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~--i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 108 (264)
..+.|..++.......+..-.+.+..++++++|+++++...... |..++... +........ ........++..+ +
T Consensus 51 ~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-g~~~~~~~~-~~~~~~~g~~~~~-~ 127 (306)
T 2p4o_A 51 EVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTVETLLTL-PDAIFLNGITPLS-D 127 (306)
T ss_dssp TTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCEEEEEEC-TTCSCEEEEEESS-S
T ss_pred CCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC-CeEEEEEeC-CCccccCcccccC-C
Confidence 45566666543333332233456889999999996665443333 54454332 322211111 1112223333332 3
Q ss_pred CCeEEEEeCCCcEEEEECCCCCc----------------------------ceEEEeecCCCcEEEEEeccCCCccceEE
Q psy9316 109 PDLLSTASGDKTVRIWDARTQKS----------------------------QIMLASGSFDKSVAIFALDKKGDLNKEVV 160 (264)
Q Consensus 109 ~~~l~s~s~dg~i~vwd~~~~~~----------------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~ 160 (264)
...+++-..++.|..+|..+++. ..++++....+.|..+++...+.......
T Consensus 128 ~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~ 207 (306)
T 2p4o_A 128 TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEI 207 (306)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEE
T ss_pred CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEE
Confidence 33444444578888888753210 01233334455666676653232211111
Q ss_pred EeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--ec-CceEEEEEc---CCCCEEEEeeCCC
Q psy9316 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--TK-GENINITWA---PNGNTIAVGNKED 228 (264)
Q Consensus 161 ~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~~-~~~~~v~~s---p~g~~la~gs~d~ 228 (264)
+.. ...-..+++.+++ .++++....+.|.++|.......... .. ..+.+++|. |+++.|.+.+..+
T Consensus 208 ~~~-~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 208 FVE-QTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEE-SCCCSSEEEBTTC-CEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred Eec-cCCCCCeEECCCC-CEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 111 1234557777754 67777777889999998633211111 12 357889998 8988887766544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.071 Score=43.08 Aligned_cols=178 Identities=12% Similarity=0.107 Sum_probs=96.9
Q ss_pred ccccccCC--CCEEEEEECCCCCeEEEEECCC--cEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCC
Q psy9316 44 IKEYQAHG--SKVHSVAWSCDGRRLASGSFDK--SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 119 (264)
Q Consensus 44 ~~~~~~h~--~~V~~l~~s~~g~~l~s~s~dg--~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg 119 (264)
+++| .|. .....|.|+. +....+.+.+| .|+++|+.+. .......+..+ ..-..+... ++++....-.++
T Consensus 12 ~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tg-kv~~~~~l~~~-~fgeGi~~~--~~~ly~ltw~~~ 85 (243)
T 3mbr_X 12 VKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETG-RILQRAEVPPP-YFGAGIVAW--RDRLIQLTWRNH 85 (243)
T ss_dssp EEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTC-CEEEEEECCTT-CCEEEEEEE--TTEEEEEESSSS
T ss_pred EEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCC-CEEEEEeCCCC-cceeEEEEe--CCEEEEEEeeCC
Confidence 4455 554 4577899985 55555666654 8999998753 32221212111 112334433 445555555689
Q ss_pred cEEEEECCCCCcce-----------------EEEeecCCCcEEEEEeccCCCccceEEEeccc---cceeeEEEcCCCCC
Q psy9316 120 TVRIWDARTQKSQI-----------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHT---GSVDQLCWHATNPD 179 (264)
Q Consensus 120 ~i~vwd~~~~~~~~-----------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~---~~i~~i~~~~~~~~ 179 (264)
.+.+||.++.+... ++++ ..++.|.++|.......... ....+. ..++.+.|. ++.
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I-~V~~~g~~~~~lNeLe~~--~G~ 161 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMS-DGTAVIRKLDPDTLQQVGSI-KVTAGGRPLDNLNELEWV--NGE 161 (243)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEE-CSSSEEEEECTTTCCEEEEE-ECEETTEECCCEEEEEEE--TTE
T ss_pred EEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEE-CCCCeEEEEeCCCCeEEEEE-EEccCCcccccceeeEEe--CCE
Confidence 99999998754322 2222 23445555554332211111 111111 234566665 456
Q ss_pred EEEEEeCCCcEEEEeCCCCcceeEee--------------c-CceEEEEEcCCCCEE-EEeeCCCeEE
Q psy9316 180 LLSTASGDKTVRIWDARTQKSQIIAT--------------K-GENINITWAPNGNTI-AVGNKEDLVT 231 (264)
Q Consensus 180 ~i~s~~~dg~i~iwD~~t~~~~~~~~--------------~-~~~~~v~~sp~g~~l-a~gs~d~~i~ 231 (264)
+++..-.+..|.+.|.++++...... . ...+.|+|+|+++.| ++|..=..++
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~ 229 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLY 229 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEE
Confidence 77666578899999999988522211 1 124679999977655 5554333333
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.008 Score=56.14 Aligned_cols=54 Identities=15% Similarity=0.122 Sum_probs=40.8
Q ss_pred CcEEEEeCCCCcceeEe-ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCC
Q psy9316 188 KTVRIWDARTQKSQIIA-TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPP 241 (264)
Q Consensus 188 g~i~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~ 241 (264)
|.|..||+.+++..-.. .........++.+|..+++++.|+.++.||+.++...
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 78999999998753332 2333445567778889999999999999998875543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.1 Score=44.34 Aligned_cols=158 Identities=12% Similarity=0.033 Sum_probs=95.2
Q ss_pred CCCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC
Q psy9316 51 GSKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 129 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~ 129 (264)
-..+..++|++....|+-+. ..+.|..++++.. ... .+..........+++.+.++++..+-...+.|.+.+++..
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~--~~~-~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 148 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGS--NVE-EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 148 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCE-EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCC--Cce-EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence 34578999998776666554 5677888876532 111 1222222334567777656555555555677777776532
Q ss_pred CcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCC-CcEEEEeCCCCcceeEee--c
Q psy9316 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-KTVRIWDARTQKSQIIAT--K 206 (264)
Q Consensus 130 ~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~d-g~i~iwD~~t~~~~~~~~--~ 206 (264)
... .++ ......-..+++.|.++.++.+-... +.|..+|+.......... .
T Consensus 149 ~~~-~l~-------------------------~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~ 202 (349)
T 3v64_C 149 HRK-VLL-------------------------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHL 202 (349)
T ss_dssp SCE-EEE-------------------------CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSC
T ss_pred ceE-EEE-------------------------eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCC
Confidence 211 110 11112335677888766677776666 889999887654332222 2
Q ss_pred CceEEEEEcCCCCEE-EEeeCCCeEEEEEccc
Q psy9316 207 GENINITWAPNGNTI-AVGNKEDLVTFIDVVK 237 (264)
Q Consensus 207 ~~~~~v~~sp~g~~l-a~gs~d~~i~~~d~~~ 237 (264)
..+..++++|++..| .+-+..+.|..+|...
T Consensus 203 ~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 203 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 346789999866655 5556678899999753
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.11 Score=43.99 Aligned_cols=170 Identities=10% Similarity=0.090 Sum_probs=92.4
Q ss_pred CCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce--------
Q psy9316 62 DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-------- 133 (264)
Q Consensus 62 ~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-------- 133 (264)
++..|+.++.++.+..+|... +... -.+............. + ..++.++.++.+..+|.++++...
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~t-G~~~--W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~ 175 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSD-GTVA--WQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPS 175 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTT-CCEE--EEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCEEEEEECCC--
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEE--EEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc
Confidence 467788888999999998754 2211 1111111111111121 2 466678889999999987765221
Q ss_pred --------------EEEeecCCCcEEEEEeccCCCccceEEEeccc-----cceeeEEEcCC-CCCEEEEEeCCCcEEEE
Q psy9316 134 --------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHT-----GSVDQLCWHAT-NPDLLSTASGDKTVRIW 193 (264)
Q Consensus 134 --------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~-----~~i~~i~~~~~-~~~~i~s~~~dg~i~iw 193 (264)
.+..+..++.+..++.......... ...... ..+..+.-.|. ....+..++.++.+..+
T Consensus 176 ~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 176 LSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQ-RISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL 254 (376)
T ss_dssp ---CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEE-ECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred eeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEE-ecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence 2344555666666665432211111 000000 00000101110 12456667789999999
Q ss_pred eCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 194 DARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 194 D~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
|.++++..-.........+.. ++..+.+++.++.+..+|..++..
T Consensus 255 d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~ 299 (376)
T 3q7m_A 255 DLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT 299 (376)
T ss_dssp ETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCE
T ss_pred ECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcE
Confidence 999887543333333333333 477788888899999999876543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0047 Score=54.40 Aligned_cols=69 Identities=9% Similarity=0.000 Sum_probs=50.9
Q ss_pred eEEEcCCCCCEEEEEe---------CCCcEEEEeCCCCcceeEe-ec--------CceEEEEEcCCCCEEEEeeC--CCe
Q psy9316 170 QLCWHATNPDLLSTAS---------GDKTVRIWDARTQKSQIIA-TK--------GENINITWAPNGNTIAVGNK--EDL 229 (264)
Q Consensus 170 ~i~~~~~~~~~i~s~~---------~dg~i~iwD~~t~~~~~~~-~~--------~~~~~v~~sp~g~~la~gs~--d~~ 229 (264)
.+.++|++..++++.. .++.|.++|..+.+..... .. .....+.++|||++|.++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 5788998776666542 4679999999998753222 22 23456899999999998864 688
Q ss_pred EEEEEcccC
Q psy9316 230 VTFIDVVKS 238 (264)
Q Consensus 230 i~~~d~~~~ 238 (264)
|.++|+.+.
T Consensus 202 VsVID~~t~ 210 (426)
T 3c75_H 202 VGVVDLEGK 210 (426)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
Confidence 999998763
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.061 Score=47.23 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=89.5
Q ss_pred CEEEEEECC-CCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCC----cEEEEECC
Q psy9316 53 KVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK----TVRIWDAR 127 (264)
Q Consensus 53 ~V~~l~~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg----~i~vwd~~ 127 (264)
....|+++| ++..|+.+...+.|..++++. +.. ..+.........++|++++..++++...++ .+.+.+.+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~-~~v---~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK-EYV---STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTT-TEE---EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCC-CEE---EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 356889998 466777776657788887643 111 112223445778888876543444332222 12222211
Q ss_pred CCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE-eec
Q psy9316 128 TQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII-ATK 206 (264)
Q Consensus 128 ~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~-~~~ 206 (264)
. .......+.. ......++++|.++.++++-..++.|..+|..+...... ...
T Consensus 214 g-------------------------~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~ 267 (430)
T 3tc9_A 214 S-------------------------GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ 267 (430)
T ss_dssp G-------------------------TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred C-------------------------ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC
Confidence 1 0100001111 123455778886667877777789999999987654222 221
Q ss_pred --CceEEEEEcCCCCEE-EEeeCCCeEEEEEcc
Q psy9316 207 --GENINITWAPNGNTI-AVGNKEDLVTFIDVV 236 (264)
Q Consensus 207 --~~~~~v~~sp~g~~l-a~gs~d~~i~~~d~~ 236 (264)
.....++|+|+|++| ++-..++.|..++..
T Consensus 268 ~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 246789999999954 555678899998865
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.01 E-value=0.15 Score=44.30 Aligned_cols=187 Identities=13% Similarity=0.063 Sum_probs=104.8
Q ss_pred eeEEEeecCceEEeccc-cccccccccCCCCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCC-CcccEEEecccccEE
Q psy9316 24 QFHLVCKIDDYVKHFNT-HNDIKEYQAHGSKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGD-LNKEVVYRGHTGSVD 100 (264)
Q Consensus 24 ~~~~~~~~d~~~~~~~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~-~~~~~~~~~h~~~v~ 100 (264)
.++++..-. .|+.... ......+...-..+..|+|++....|+-+. ..+.|..++++.... .....+.........
T Consensus 84 ~~ll~~~~~-~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRH-EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETT-EEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccc-eeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 344444433 3443333 222333334456788999999777666654 467788887653110 111122222334566
Q ss_pred eEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCE
Q psy9316 101 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDL 180 (264)
Q Consensus 101 ~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~ 180 (264)
.+++.+.+.++..+-...+.|.+.|++.......+ ......-..|+..|.++.+
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~--------------------------~~~~~~P~~iavdp~~g~l 216 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF--------------------------RENGSKPRAIVVDPVHGFM 216 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE--------------------------ECSSCCEEEEEEETTTTEE
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE--------------------------eCCCCCcceEEEecccCeE
Confidence 77777655555555556677777777643211111 0011224567777766666
Q ss_pred EEEEeC-CCcEEEEeCCCCcceeEee--cCceEEEEEcCCCCEEEEe-eCCCeEEEEEccc
Q psy9316 181 LSTASG-DKTVRIWDARTQKSQIIAT--KGENINITWAPNGNTIAVG-NKEDLVTFIDVVK 237 (264)
Q Consensus 181 i~s~~~-dg~i~iwD~~t~~~~~~~~--~~~~~~v~~sp~g~~la~g-s~d~~i~~~d~~~ 237 (264)
+.+-.. .+.|...++.......... ...+..++++|++..|..+ +..+.|..+|+..
T Consensus 217 y~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 217 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp EEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 665433 4789988888655433322 2457889999877665444 6678899999753
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.064 Score=50.60 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=80.5
Q ss_pred CEEEEEEC-CCCCeEEEEEC-CC----cEEEEEeccC-CCCcccEEEecccccEEeEEEecCCCCeEEEEeCC-----Cc
Q psy9316 53 KVHSVAWS-CDGRRLASGSF-DK----SVAIFALDKK-GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-----KT 120 (264)
Q Consensus 53 ~V~~l~~s-~~g~~l~s~s~-dg----~i~v~~~~~~-~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~d-----g~ 120 (264)
.+...+|| |||++|+-+.. +| .|.++++... ..... .+. .....+.|+|++..++.+ ..| ..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~~l~y~-~~d~~~~~~~ 248 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHTSLFYV-TKDETLRENK 248 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTTEEEEE-EECTTCCEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCCEEEEE-EECCCCCCCE
Confidence 57789999 99998886543 33 4889888653 21111 111 113467899977555544 433 13
Q ss_pred EEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeC--CCcEEEEeCCCC
Q psy9316 121 VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG--DKTVRIWDARTQ 198 (264)
Q Consensus 121 i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~--dg~i~iwD~~t~ 198 (264)
|+++++.+..... ..++.. ........+.|+|++..++++... ...|.++|+.+.
T Consensus 249 v~~~~lgt~~~~~----------~lv~~~-------------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 249 VWRHVMGKLQSED----------VCLYEE-------------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEETTSCGGGC----------EEEEEC-------------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEECCCCchhc----------EEEEec-------------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 5555554432110 111110 111223457888876555544433 446777888875
Q ss_pred cc-e--eEee---cCceEEEEEcCCCCEEEEeeCCC-----eEEEEEccc
Q psy9316 199 KS-Q--IIAT---KGENINITWAPNGNTIAVGNKED-----LVTFIDVVK 237 (264)
Q Consensus 199 ~~-~--~~~~---~~~~~~v~~sp~g~~la~gs~d~-----~i~~~d~~~ 237 (264)
.. . .... .+...++.|+. |+.|+..+..+ .|..+|+..
T Consensus 306 ~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 306 NAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp TTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 31 1 1111 12234444443 66665554432 567777653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.13 Score=42.52 Aligned_cols=175 Identities=13% Similarity=0.120 Sum_probs=97.5
Q ss_pred CCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeC-CC-cEEEEECCCC
Q psy9316 52 SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG-DK-TVRIWDARTQ 129 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~-dg-~i~vwd~~~~ 129 (264)
.....++|+++++.+++-..++.|..|+.+ +... ..+. .......+++.+++ +++++... ++ .+..+|..++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~--g~~~--~~~~-~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g 105 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPD--GNQQ--IHAT-VEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDG 105 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEE--EEEE-CSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTS
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCC--CceE--EEEe-CCCCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCC
Confidence 457789999999866666577888888643 2221 1122 23457788888865 45544433 22 4666665554
Q ss_pred Ccce--------------------EEEeecCCCcEEEEEeccCCCccceEEEe---------ccccceeeEEEcCCCCCE
Q psy9316 130 KSQI--------------------MLASGSFDKSVAIFALDKKGDLNKEVVYR---------GHTGSVDQLCWHATNPDL 180 (264)
Q Consensus 130 ~~~~--------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~---------~h~~~i~~i~~~~~~~~~ 180 (264)
+... .+++...++.|..++.... ........ .....-+.| +|++..+
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~--~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~l 181 (306)
T 2p4o_A 106 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP--SGSIWLEHPMLARSNSESVFPAANGL--KRFGNFL 181 (306)
T ss_dssp CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT--EEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEE
T ss_pred eEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCC--cEeEEEECCccccccccCCCCcCCCc--CcCCCEE
Confidence 3211 1122223444444443210 00000000 001122334 4555557
Q ss_pred EEEEeCCCcEEEEeCCC-Ccc---eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 181 LSTASGDKTVRIWDART-QKS---QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 181 i~s~~~dg~i~iwD~~t-~~~---~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
+++-...+.|..||+.. +.. ........+..++++++|+++++....+.|..+|..
T Consensus 182 yv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 182 YVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred EEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 77777789999999875 221 111112345568999999988888778899999864
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.17 Score=43.62 Aligned_cols=159 Identities=12% Similarity=0.036 Sum_probs=93.4
Q ss_pred CCCCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCC
Q psy9316 50 HGSKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128 (264)
Q Consensus 50 h~~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~ 128 (264)
.-..+..++|++....|+-+. ..+.|..++++. .... .+..........+++.+.++.+.++-...+.|.+.+++.
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g--~~~~-~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNG--SNVE-EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 190 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CCEE-EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCC--CCcE-EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence 344678999998766666554 567788887653 2111 122222223456677665555555555566666666653
Q ss_pred CCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCC-CcEEEEeCCCCcceeEee--
Q psy9316 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-KTVRIWDARTQKSQIIAT-- 205 (264)
Q Consensus 129 ~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~d-g~i~iwD~~t~~~~~~~~-- 205 (264)
.... .++ ......-..|++.|.++.++.+-... +.|..+|+..........
T Consensus 191 ~~~~-~l~-------------------------~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~ 244 (386)
T 3v65_B 191 AHRK-VLL-------------------------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH 244 (386)
T ss_dssp CSCE-EEE-------------------------CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred CceE-Eee-------------------------cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC
Confidence 2211 110 11112335677777766676665555 789999987655433322
Q ss_pred cCceEEEEEcCCCCEE-EEeeCCCeEEEEEccc
Q psy9316 206 KGENINITWAPNGNTI-AVGNKEDLVTFIDVVK 237 (264)
Q Consensus 206 ~~~~~~v~~sp~g~~l-a~gs~d~~i~~~d~~~ 237 (264)
...+..++++|++..| .+-+..+.|..+|...
T Consensus 245 ~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 245 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 2346789999866655 5556678899998753
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.14 Score=47.30 Aligned_cols=179 Identities=9% Similarity=0.100 Sum_probs=94.8
Q ss_pred EEEEEECCCCCeEEEEEC-CCcEEEEEeccCCCCcccEEEecccccE-EeEEEecCCCCeEEEEe-CC-----CcEEEEE
Q psy9316 54 VHSVAWSCDGRRLASGSF-DKSVAIFALDKKGDLNKEVVYRGHTGSV-DQLCWHATNPDLLSTAS-GD-----KTVRIWD 125 (264)
Q Consensus 54 V~~l~~s~~g~~l~s~s~-dg~i~v~~~~~~~~~~~~~~~~~h~~~v-~~i~~~~~~~~~l~s~s-~d-----g~i~vwd 125 (264)
..+.++.++++.++.||. +..+.+||..... ..... ..+.... ..+...+ ++++++.|+ .+ ..+.+||
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~-W~~~~--~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS-WIPGP--DMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTE-EEECC--CCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEE
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCc-eeECC--CCCccccccceEEec-CCeEEEEeCcccCCcccccceEeC
Confidence 345677889999999884 4589999876432 11100 0111111 1223333 446777787 34 4688999
Q ss_pred CCCCCcc-----------------------eEEEeecCCC---------cEEEEEeccCCCccceEEEecc-------cc
Q psy9316 126 ARTQKSQ-----------------------IMLASGSFDK---------SVAIFALDKKGDLNKEVVYRGH-------TG 166 (264)
Q Consensus 126 ~~~~~~~-----------------------~~~~~~~~d~---------~i~i~~~~~~~~~~~~~~~~~h-------~~ 166 (264)
..+.+-. .+++.|+.++ .+..|+...+.-.. ....... ..
T Consensus 321 ~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~-~~~~~~~~~~~~~~~~ 399 (656)
T 1k3i_A 321 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK-SAGKRQSNRGVAPDAM 399 (656)
T ss_dssp TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE-EEEECEETTEECCCCB
T ss_pred CCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee-cCCccccccccCCCCC
Confidence 8764211 0123333332 24455544322111 0000000 01
Q ss_pred ceeeEEEcCCCCCEEEEEeCCC-----------cEEEEeCCCCcceeEe----ecCc-eEEEEEcCCCCEEEEeeCC---
Q psy9316 167 SVDQLCWHATNPDLLSTASGDK-----------TVRIWDARTQKSQIIA----TKGE-NINITWAPNGNTIAVGNKE--- 227 (264)
Q Consensus 167 ~i~~i~~~~~~~~~i~s~~~dg-----------~i~iwD~~t~~~~~~~----~~~~-~~~v~~sp~g~~la~gs~d--- 227 (264)
.-.++.+...++.+++.|+.++ .+.+||..+..-.... ...+ ..+....|+|+.+++|+.+
T Consensus 400 ~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~ 479 (656)
T 1k3i_A 400 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI 479 (656)
T ss_dssp TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred CCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence 1233444344567777777543 6888998876532221 1111 2345677899999999864
Q ss_pred --------CeEEEEEccc
Q psy9316 228 --------DLVTFIDVVK 237 (264)
Q Consensus 228 --------~~i~~~d~~~ 237 (264)
..+.+||+.+
T Consensus 480 ~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 480 PFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp TTCCCSBCCCCEEEEGGG
T ss_pred CcCCCCcccceEEEcCCC
Confidence 4689999865
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.061 Score=50.26 Aligned_cols=56 Identities=14% Similarity=0.044 Sum_probs=41.5
Q ss_pred CCcEEEEeCCCCcceeEe-ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 187 DKTVRIWDARTQKSQIIA-TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 187 dg~i~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
+|.|..||+.+++..-.. .......-.++..|..+++|+.|+.++.||.+++....
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW 510 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence 478999999998854332 22333344667789999999999999999988765543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.088 Score=48.06 Aligned_cols=173 Identities=9% Similarity=0.012 Sum_probs=103.6
Q ss_pred CCEEEEEE-C-CCCCeEEEEEC------------------CCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCe
Q psy9316 52 SKVHSVAW-S-CDGRRLASGSF------------------DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDL 111 (264)
Q Consensus 52 ~~V~~l~~-s-~~g~~l~s~s~------------------dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 111 (264)
.....+++ + |++++++.++. ++.+.+.|.++. .......- .+....+..+|++ .+
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~---~v~~qI~V-gg~pd~~~~spdG-k~ 208 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKW---EVAWQVLV-SGNLDNCDADYEG-KW 208 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTT---EEEEEEEE-SSCCCCEEECSSS-SE
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCC---eEEEEEEe-CCCccceEECCCC-CE
Confidence 45788888 5 99999999852 346777776532 11111110 1123456677755 56
Q ss_pred EEEEeCCC---------------cEEEEECCCCCc-----ceEEEeecCCCcEEEEEecc--CCCccceEEEecccccee
Q psy9316 112 LSTASGDK---------------TVRIWDARTQKS-----QIMLASGSFDKSVAIFALDK--KGDLNKEVVYRGHTGSVD 169 (264)
Q Consensus 112 l~s~s~dg---------------~i~vwd~~~~~~-----~~~~~~~~~d~~i~i~~~~~--~~~~~~~~~~~~h~~~i~ 169 (264)
+++.+.+. .+.+.|...... ....+ +.+.+.|... .......... + ..-.
T Consensus 209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i-----~~V~VID~~~~~~~~~~~~Ipv-g--~~Ph 280 (595)
T 1fwx_A 209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL-----NGVKVVDGRKEASSLFTRYIPI-A--NNPH 280 (595)
T ss_dssp EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE-----TTEEEEECSGGGCCSSEEEEEE-E--SSCC
T ss_pred EEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE-----CcEEEEeCcccCCceeEEEEec-C--CCce
Confidence 66666542 355555432110 00111 4488888765 2221111111 1 2345
Q ss_pred eEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc----------ee--Ee-ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 170 QLCWHATNPDLLSTASGDKTVRIWDARTQKS----------QI--IA-TKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 170 ~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~----------~~--~~-~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.+.++|++..+++++-.+.+|.++|+.+.+. .. .. ....+.-++|+|+|..+.+.--|+.|..||+.
T Consensus 281 Gv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 281 GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred EEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhh
Confidence 6888998877888888999999999996521 11 11 12346779999999656777889999999987
Q ss_pred c
Q psy9316 237 K 237 (264)
Q Consensus 237 ~ 237 (264)
+
T Consensus 361 ~ 361 (595)
T 1fwx_A 361 D 361 (595)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.12 Score=42.48 Aligned_cols=192 Identities=13% Similarity=0.070 Sum_probs=97.2
Q ss_pred EEeecCceEEecccc-ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEe
Q psy9316 27 LVCKIDDYVKHFNTH-NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 105 (264)
Q Consensus 27 ~~~~~d~~~~~~~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 105 (264)
.++..++.+..++.. +....+..+...+.++...+++. |..++.++.+..++.. +... ..+......+..+...
T Consensus 111 ~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~--g~~~--~~~~~~~~~~~~~~~d 185 (330)
T 3hxj_A 111 YVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD--GTEK--WRFKTNDAITSAASIG 185 (330)
T ss_dssp EEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT--SCEE--EEEECSSCCCSCCEEC
T ss_pred EEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC--CCEe--EEEecCCCceeeeEEc
Confidence 345556666555543 33333334444556666776776 5556777888888754 2211 1222233445555554
Q ss_pred cCCCCeEEEEeCCCcEEEEECCCCCcce------------------EEEeecCCCcEEEEEeccCCCccceEEEeccccc
Q psy9316 106 ATNPDLLSTASGDKTVRIWDARTQKSQI------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167 (264)
Q Consensus 106 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~ 167 (264)
+++ . +..++ +.+..+| .+++... .+..++.++.+..++ ..+... ..+......
T Consensus 186 ~~g-~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~--~~g~~~--~~~~~~~~~ 256 (330)
T 3hxj_A 186 KDG-T-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAIN--PDGTEK--WRFKTGKRI 256 (330)
T ss_dssp TTC-C-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEEC--TTSCEE--EEEECSSCC
T ss_pred CCC-E-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEEC--CCCCEe--EEeeCCCCc
Confidence 433 3 43444 7788888 4332111 122333444444443 222211 112222222
Q ss_pred eeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-Eeec-CceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATK-GENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 168 i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~-~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
+..+...+ ++ .|..++.+|.+..+|. +++... .... ..+.++...++|+ |.+|+.+|.+++....
T Consensus 257 ~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 257 ESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp CSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred cccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence 33344432 33 4445677889999996 444322 2222 2344566667776 4568889999998754
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0076 Score=52.02 Aligned_cols=68 Identities=7% Similarity=-0.097 Sum_probs=49.9
Q ss_pred eEEEcCCCCCEEEEEe---------CCCcEEEEeCCCCcceeEe-ec--------CceEEEEEcCCCCEEEEeeC--CCe
Q psy9316 170 QLCWHATNPDLLSTAS---------GDKTVRIWDARTQKSQIIA-TK--------GENINITWAPNGNTIAVGNK--EDL 229 (264)
Q Consensus 170 ~i~~~~~~~~~i~s~~---------~dg~i~iwD~~t~~~~~~~-~~--------~~~~~v~~sp~g~~la~gs~--d~~ 229 (264)
.+.++|++..++++.. .++.|.+||+.+.+..... .. .....++++|||+++.++.. ++.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 5888998776666542 3789999999998853332 22 23557999999999998864 467
Q ss_pred EEE--EEccc
Q psy9316 230 VTF--IDVVK 237 (264)
Q Consensus 230 i~~--~d~~~ 237 (264)
+.+ +|+.+
T Consensus 149 v~V~~iD~~t 158 (368)
T 1mda_H 149 AGLSVPGASD 158 (368)
T ss_dssp EEEEETTTEE
T ss_pred EEEEEEchhh
Confidence 888 98754
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.08 Score=44.93 Aligned_cols=167 Identities=5% Similarity=-0.105 Sum_probs=91.4
Q ss_pred CCCeEEEEECCCcEEEEEeccCCCCcccEEEecc---------cccEEe-EEEecCCCCeEEEEeCCCcEEEEECCCCCc
Q psy9316 62 DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH---------TGSVDQ-LCWHATNPDLLSTASGDKTVRIWDARTQKS 131 (264)
Q Consensus 62 ~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h---------~~~v~~-i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~ 131 (264)
++..|+.++.++.|..+|... +... -.+... ...+.. +.. .+..++.++.++.+..+|.++++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~t-G~~~--W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~~g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADD-GKEI--WSVSLAEKDGWFSKEPALLSGGVTV---SGGHVYIGSEKAQVYALNTSDGTV 125 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTT-CCEE--EEEECCC---CCSCCCCCEEEEEEE---ETTEEEEEETTSEEEEEETTTCCE
T ss_pred ECCEEEEEcCCCeEEEEEccC-Ccee--eeecCccccccccccCcccccCceE---eCCEEEEEcCCCEEEEEECCCCCE
Confidence 367788888888899888754 2211 111111 112221 222 234677788999999999987653
Q ss_pred ce-----------------EEEeecCCCcEEEEEeccCCCccceEEEeccccce------eeEEEcCCCCCEEEEEeCCC
Q psy9316 132 QI-----------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV------DQLCWHATNPDLLSTASGDK 188 (264)
Q Consensus 132 ~~-----------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i------~~i~~~~~~~~~i~s~~~dg 188 (264)
.. .+..++.++.+..++.......... .. ..++ ...... ...++.+..+|
T Consensus 126 ~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~---~~-~~~~~~~~~~~~~~~~---~~~v~~g~~~g 198 (376)
T 3q7m_A 126 AWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTV---NL-DMPSLSLRGESAPTTA---FGAAVVGGDNG 198 (376)
T ss_dssp EEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEE---EC-CC-----CCCCCCEEE---TTEEEECCTTT
T ss_pred EEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEE---eC-CCCceeecCCCCcEEE---CCEEEEEcCCC
Confidence 21 2445566777777765433221111 10 0111 111111 23566678899
Q ss_pred cEEEEeCCCCcceeEeecCce------E---EEEEcC--CCCEEEEeeCCCeEEEEEcccCCCC
Q psy9316 189 TVRIWDARTQKSQIIATKGEN------I---NITWAP--NGNTIAVGNKEDLVTFIDVVKSLPP 241 (264)
Q Consensus 189 ~i~iwD~~t~~~~~~~~~~~~------~---~v~~sp--~g~~la~gs~d~~i~~~d~~~~~~~ 241 (264)
.+..+|.++++..-....... . .+.-+| .+..+.+++.++.+..+|..++...
T Consensus 199 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~ 262 (376)
T 3q7m_A 199 RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM 262 (376)
T ss_dssp EEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE
T ss_pred EEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE
Confidence 999999998875333221100 0 011111 3567777788899999998765433
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.22 Score=41.26 Aligned_cols=68 Identities=10% Similarity=0.005 Sum_probs=45.0
Q ss_pred eeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc---ceeE-eecCceEEEEEcCCCCEEEEeeC----------CCeEEEE
Q psy9316 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQK---SQII-ATKGENINITWAPNGNTIAVGNK----------EDLVTFI 233 (264)
Q Consensus 168 i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~---~~~~-~~~~~~~~v~~sp~g~~la~gs~----------d~~i~~~ 233 (264)
-+.|+++|++..++++-...+.|..||+.... .... ...+ +..++++++|+++++... .+.|..+
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~ 265 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKF 265 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEE
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEE
Confidence 34588888654466666677899999987532 1111 1234 677999999987766544 4567777
Q ss_pred Ecc
Q psy9316 234 DVV 236 (264)
Q Consensus 234 d~~ 236 (264)
|..
T Consensus 266 d~~ 268 (322)
T 2fp8_A 266 DEF 268 (322)
T ss_dssp CTT
T ss_pred CCC
Confidence 753
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.31 Score=45.87 Aligned_cols=74 Identities=16% Similarity=0.128 Sum_probs=44.2
Q ss_pred EEEEECCCCCeEEEEECCC-----cEEEEEeccCCCCcccEEEe-cccccEEeEEEecCCCCeEEEEeC--CCcEEEEEC
Q psy9316 55 HSVAWSCDGRRLASGSFDK-----SVAIFALDKKGDLNKEVVYR-GHTGSVDQLCWHATNPDLLSTASG--DKTVRIWDA 126 (264)
Q Consensus 55 ~~l~~s~~g~~l~s~s~dg-----~i~v~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~l~s~s~--dg~i~vwd~ 126 (264)
..+.|+|||+.|+....|. .|.++++.... .....++. ........+.|+|++..++++... ...+.++|+
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~-~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQ-SEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCG-GGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEES
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCc-hhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 4678999999888877652 46666654321 11223343 223445678899976544444433 345777888
Q ss_pred CCC
Q psy9316 127 RTQ 129 (264)
Q Consensus 127 ~~~ 129 (264)
.++
T Consensus 303 ~~~ 305 (751)
T 2xe4_A 303 RKG 305 (751)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.46 E-value=0.32 Score=40.71 Aligned_cols=183 Identities=9% Similarity=-0.023 Sum_probs=102.5
Q ss_pred CCEEEEEECCCCCeEEEE-ECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 52 SKVHSVAWSCDGRRLASG-SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~-s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
..+.+++|++....|+-+ ...+.|..++.+... . ...+....-.....+++.+.++.+..+-...+.|.+++++...
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~-~-~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-S-VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSS-C-CCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCC-c-eEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence 356789999866655554 456788888765321 1 1122222223456777776666666666667889998886532
Q ss_pred cceE----------EEeecCCCcEE---------EEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEE
Q psy9316 131 SQIM----------LASGSFDKSVA---------IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 191 (264)
Q Consensus 131 ~~~~----------~~~~~~d~~i~---------i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~ 191 (264)
.... ++....++.+. |+....++..... ........-+.|+++|.++.+..+-...+.|.
T Consensus 113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~-~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~ 191 (318)
T 3sov_A 113 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI-IINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 191 (318)
T ss_dssp CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE-EECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE-EEECCCCCccEEEEeccCCEEEEEECCCCEEE
Confidence 1111 11111122222 2222223322211 11111123367899987777777777889999
Q ss_pred EEeCCCCcceeEe--ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 192 IWDARTQKSQIIA--TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 192 iwD~~t~~~~~~~--~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
.+|+......... ....+..+++.. +..+.+-...+.|..+|..++
T Consensus 192 ~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 192 KSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp EEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred EEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 9999765433222 234567777764 344455667788888887543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.03 Score=46.00 Aligned_cols=113 Identities=16% Similarity=0.059 Sum_probs=69.8
Q ss_pred cEEeEEEecCCCCeEEEEeC--CCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcC
Q psy9316 98 SVDQLCWHATNPDLLSTASG--DKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 175 (264)
Q Consensus 98 ~v~~i~~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~ 175 (264)
....+.|+++ +.+.++.+. ++.|.++|+.+++....+..+ .+. -...+++.
T Consensus 22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~------------------------~~~-fgeGi~~~- 74 (266)
T 2iwa_A 22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMD------------------------DSY-FGEGLTLL- 74 (266)
T ss_dssp CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECC------------------------TTC-CEEEEEEE-
T ss_pred CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecC------------------------CCc-ceEEEEEe-
Confidence 3578889875 344444443 689999999887643222111 010 11123443
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 176 TNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 176 ~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
+..+.++.-.++.+.++|..+.+.......+......+++||+.|.++..++.+.++|+.+.
T Consensus 75 -g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~ 136 (266)
T 2iwa_A 75 -NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTF 136 (266)
T ss_dssp -TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTC
T ss_pred -CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCC
Confidence 34566666678999999999887533322121223456678888877778999999998653
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.037 Score=45.35 Aligned_cols=111 Identities=11% Similarity=0.129 Sum_probs=71.9
Q ss_pred ccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCC
Q psy9316 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 176 (264)
Q Consensus 97 ~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~ 176 (264)
.....+.|+ ++.+..+.+.+|.|+.+|+++++....+ ... .. --..++. .
T Consensus 55 ~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~------------------------~~-FgeGit~--~ 104 (268)
T 3nok_A 55 AFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLG------------------------NI-FAEGLAS--D 104 (268)
T ss_dssp CCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT------------------------TC-CEEEEEE--C
T ss_pred cccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC------------------------Cc-ceeEEEE--e
Confidence 345778876 4567778888999999999987754322 110 00 0011333 2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcceeEe-ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 177 NPDLLSTASGDKTVRIWDARTQKSQIIA-TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 177 ~~~~i~s~~~dg~i~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
+..+.++.-.++.+.+||..+.+..... .......+ +++|+.|.+...++.|.++|..+..
T Consensus 105 g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~ 166 (268)
T 3nok_A 105 GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFA 166 (268)
T ss_dssp SSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCE--EEETTEEEEECSSSEEEEECTTTCC
T ss_pred CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEE--ecCCCEEEEECCCCEEEEEcCCCCe
Confidence 4456666667999999999998753332 23333334 4678888887789999999977543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.21 Score=40.26 Aligned_cols=131 Identities=16% Similarity=0.150 Sum_probs=76.7
Q ss_pred ccEEeEEEecCCCCeEEEEeCCC--cEEEEECCCCCcce-------------------EEEeecCCCcEEEEEeccCCCc
Q psy9316 97 GSVDQLCWHATNPDLLSTASGDK--TVRIWDARTQKSQI-------------------MLASGSFDKSVAIFALDKKGDL 155 (264)
Q Consensus 97 ~~v~~i~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~~-------------------~~~~~~~d~~i~i~~~~~~~~~ 155 (264)
+....+.|+. +.+..+.+.+| .|+.+|+++++... ++++...++.+.++|.....
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~-- 96 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT-- 96 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTE--
T ss_pred cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc--
Confidence 4577888874 45666666654 89999999876422 22333445556666653211
Q ss_pred cceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE-ee--c----CceEEEEEcCCCCEEEEeeCCC
Q psy9316 156 NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII-AT--K----GENINITWAPNGNTIAVGNKED 228 (264)
Q Consensus 156 ~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~-~~--~----~~~~~v~~sp~g~~la~gs~d~ 228 (264)
...++.- ...-..+++ ++..+++|- .++.|.++|.++.+.... .. . ...+.+.|. +|+.++..-.++
T Consensus 97 -~~~ti~~-~~~Gwglt~--dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 97 -PRARFRY-PGEGWALTS--DDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp -EEEEEEC-SSCCCEEEE--CSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTT
T ss_pred -EEEEEeC-CCCceEEee--CCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCC
Confidence 1112211 111134443 455666664 588999999999764221 11 1 123456666 677766666788
Q ss_pred eEEEEEccc
Q psy9316 229 LVTFIDVVK 237 (264)
Q Consensus 229 ~i~~~d~~~ 237 (264)
.|.++|+.+
T Consensus 171 ~I~vIDp~t 179 (243)
T 3mbr_X 171 RIARIDPAS 179 (243)
T ss_dssp EEEEECTTT
T ss_pred eEEEEECCC
Confidence 889998765
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.43 Score=40.73 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=32.8
Q ss_pred CcEEEEeCCCCcceeE-eecCceEEEEEcCCCCEEEEe-eCCCeEEEEEccc
Q psy9316 188 KTVRIWDARTQKSQII-ATKGENINITWAPNGNTIAVG-NKEDLVTFIDVVK 237 (264)
Q Consensus 188 g~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~g-s~d~~i~~~d~~~ 237 (264)
|.+.-+|.. +.... ......+.++||||++.|.++ +..+.|..||+..
T Consensus 203 g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 203 SFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 556666663 33222 223457889999999887665 5678999999864
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.038 Score=45.15 Aligned_cols=112 Identities=11% Similarity=0.134 Sum_probs=69.1
Q ss_pred ccEEeEEEecCCCCeEEEEeCCC--cEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEc
Q psy9316 97 GSVDQLCWHATNPDLLSTASGDK--TVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 174 (264)
Q Consensus 97 ~~v~~i~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~ 174 (264)
.....+.|+ ++.+..+.+.+| .|+.+|+++++....+... ... --..+..
T Consensus 43 ~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~------------------------~~~-FgeGit~- 94 (262)
T 3nol_A 43 AFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG------------------------KRY-FGEGISD- 94 (262)
T ss_dssp CEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC------------------------TTC-CEEEEEE-
T ss_pred cccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecC------------------------Ccc-ceeEEEE-
Confidence 335788887 346677777776 8999999987643222110 000 0011222
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCcceeEe-ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 175 ATNPDLLSTASGDKTVRIWDARTQKSQIIA-TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 175 ~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
.+..+.++.-.++.+.+||..+.+..... ..... ..++++++.|.+...++.|.++|+.+..
T Consensus 95 -~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~ 157 (262)
T 3nol_A 95 -WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLT 157 (262)
T ss_dssp -ETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCS
T ss_pred -eCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCe
Confidence 23455555567899999999998754332 22332 3444678888777778999999987543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.03 Score=52.43 Aligned_cols=160 Identities=16% Similarity=0.060 Sum_probs=87.2
Q ss_pred CCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCC-CcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC
Q psy9316 52 SKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGD-LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 129 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~ 129 (264)
..+..|+|++++..|+.+. ..+.|..++++.... ......+.........+++.+.+++++++-...+.|.++|++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3567889998777776654 457888888753100 00111111111223456665445455555445667777776532
Q ss_pred CcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCC-CcEEEEeCCCCcceeEee--c
Q psy9316 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-KTVRIWDARTQKSQIIAT--K 206 (264)
Q Consensus 130 ~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~d-g~i~iwD~~t~~~~~~~~--~ 206 (264)
... .++ ......-..|++.|.++.++.+.... +.|..+++.......... .
T Consensus 486 ~~~-~l~-------------------------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l 539 (699)
T 1n7d_A 486 KRK-TLF-------------------------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI 539 (699)
T ss_dssp CEE-EEC-------------------------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSC
T ss_pred ceE-EEE-------------------------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCC
Confidence 211 110 00011224567777655565554333 788888886544322221 2
Q ss_pred CceEEEEEcCCCC-EEEEeeCCCeEEEEEccc
Q psy9316 207 GENINITWAPNGN-TIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 207 ~~~~~v~~sp~g~-~la~gs~d~~i~~~d~~~ 237 (264)
..+..|+|+|++. ++.+-+..+.|..+|+..
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 3466799998755 445556778899999753
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.26 Score=45.02 Aligned_cols=170 Identities=14% Similarity=0.056 Sum_probs=87.2
Q ss_pred CCCCeEEEEEC-CCcEEEEEeccCCCCcccEEEecccccEEeEEEe--cCCCCeEEEEe------------------CCC
Q psy9316 61 CDGRRLASGSF-DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH--ATNPDLLSTAS------------------GDK 119 (264)
Q Consensus 61 ~~g~~l~s~s~-dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~--~~~~~~l~s~s------------------~dg 119 (264)
+||++|+.... +..|.+.|+.... ......+ .-......+.+. |++ .+++.++ .++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~-~~~ii~i-p~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMK-CDAILEI-PNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTE-EEEEEEC-SSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCce-EeeEEeC-CCCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccCc
Confidence 48888888665 4569999886522 1111111 112346677763 545 4555553 345
Q ss_pred cEEEEECCCCCcceEEEe--------ecCCCcEEEEEeccCCCccceEEE-eccccceeeE------EEcCCCCCEEEEE
Q psy9316 120 TVRIWDARTQKSQIMLAS--------GSFDKSVAIFALDKKGDLNKEVVY-RGHTGSVDQL------CWHATNPDLLSTA 184 (264)
Q Consensus 120 ~i~vwd~~~~~~~~~~~~--------~~~d~~i~i~~~~~~~~~~~~~~~-~~h~~~i~~i------~~~~~~~~~i~s~ 184 (264)
.+.++|..+.+....+.. .+.||...+............... ..-.+.|..+ .+.+.+....+
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i-- 253 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL-- 253 (595)
T ss_dssp EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE--
T ss_pred eEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE--
Confidence 788889887654433333 223333333222111000000000 0000001100 01122222222
Q ss_pred eCCCcEEEEeCCC--Ccc-e-eEeecCceEEEEEcCCCCEE-EEeeCCCeEEEEEcccC
Q psy9316 185 SGDKTVRIWDART--QKS-Q-IIATKGENINITWAPNGNTI-AVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 185 ~~dg~i~iwD~~t--~~~-~-~~~~~~~~~~v~~sp~g~~l-a~gs~d~~i~~~d~~~~ 238 (264)
+.|.|.|.++ +.. . .......+..+.++|||+++ +++..++.+.++|+.+.
T Consensus 254 ---~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 254 ---NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp ---TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred ---CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 5699999998 332 1 22234456789999999977 45567899999999853
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.29 Score=43.78 Aligned_cols=68 Identities=16% Similarity=0.049 Sum_probs=48.5
Q ss_pred eeEEEcCCCCCEEEEEeCCCcEEEEeCC-------CCcc-------------eeEeec--CceEEEEEcCCCCE-EEEee
Q psy9316 169 DQLCWHATNPDLLSTASGDKTVRIWDAR-------TQKS-------------QIIATK--GENINITWAPNGNT-IAVGN 225 (264)
Q Consensus 169 ~~i~~~~~~~~~i~s~~~dg~i~iwD~~-------t~~~-------------~~~~~~--~~~~~v~~sp~g~~-la~gs 225 (264)
..++.+|.++.++++-..++.|..+|+. ++.. .+.... .....++|+|+|++ +++-+
T Consensus 250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~ 329 (496)
T 3kya_A 250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI 329 (496)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeC
Confidence 4567788777888888889999999997 5543 111111 23578999999995 45557
Q ss_pred CCCeEEEEEcc
Q psy9316 226 KEDLVTFIDVV 236 (264)
Q Consensus 226 ~d~~i~~~d~~ 236 (264)
..+.|+.+|..
T Consensus 330 ~~h~I~kid~d 340 (496)
T 3kya_A 330 NNHYFMRSDYD 340 (496)
T ss_dssp TTTEEEEEEEE
T ss_pred CCCEEEEEecC
Confidence 78889997753
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.19 Score=46.76 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=40.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcceeEee-cCce--EEEEEcCCCC-EEEEeeC----------------CCeEEEEEccc
Q psy9316 178 PDLLSTASGDKTVRIWDARTQKSQIIAT-KGEN--INITWAPNGN-TIAVGNK----------------EDLVTFIDVVK 237 (264)
Q Consensus 178 ~~~i~s~~~dg~i~iwD~~t~~~~~~~~-~~~~--~~v~~sp~g~-~la~gs~----------------d~~i~~~d~~~ 237 (264)
+.+++.++.||.+++||.++++...... ...+ .-+.|.++|+ ++++.+. .+.+..|.+..
T Consensus 488 g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 488 GNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 3466778999999999999998644333 2222 3367778887 4455443 47788888774
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.2 Score=46.50 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=40.4
Q ss_pred CCCcEEEEeCCCCcceeEe-ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCC
Q psy9316 186 GDKTVRIWDARTQKSQIIA-TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPP 241 (264)
Q Consensus 186 ~dg~i~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~ 241 (264)
.+|.|..||+.+++..-.. .........+...|.++++|+.|+.++.||...+...
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 3588999999998853332 2233333455667899999999999999998765443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.74 Score=38.87 Aligned_cols=167 Identities=13% Similarity=0.140 Sum_probs=91.0
Q ss_pred CCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEec----c--cccEEeEEE---ecCCCCeEEEEe-----
Q psy9316 52 SKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRG----H--TGSVDQLCW---HATNPDLLSTAS----- 116 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~----h--~~~v~~i~~---~~~~~~~l~s~s----- 116 (264)
-.-.+++|++....+..++ ..++|..|+... +.... ..+.. . ...+..+.| .|. ++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~-~~~~~-~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af 89 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKT-QSHFN-VVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSF 89 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTT-CCEEE-ECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCC-CeEEE-EecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccc
Confidence 3345788988655555555 789999997642 22111 11221 0 113578888 564 45555332
Q ss_pred --------CCCcEEEEECC---CCCcceEEEeecCCCcEEEEEeccCCCccce-EEEec-cccceeeEEEcCCCCCEEEE
Q psy9316 117 --------GDKTVRIWDAR---TQKSQIMLASGSFDKSVAIFALDKKGDLNKE-VVYRG-HTGSVDQLCWHATNPDLLST 183 (264)
Q Consensus 117 --------~dg~i~vwd~~---~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~-~~~~~-h~~~i~~i~~~~~~~~~i~s 183 (264)
.+..+..+|+. +++....+ ++.. .... ....+ -....+.+...+.+ ...++
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~------------dL~~---~~~~~~~~~g~~~~~~nDvavD~~G-naYVt 153 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSV------------NFEK---VQDEFEKKAGKRPFGVVQSAQDRDG-NSYVA 153 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEE------------ESHH---HHHHHHHHHSSCCEEEEEEEECTTS-CEEEE
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEe------------cCcc---ccccccccccccccCCceeEECCCC-CEEEe
Confidence 14556667766 43322111 1100 0000 00000 01236677777654 45556
Q ss_pred EeCC-CcEEEEeCCCCcceeEee-c------CceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 184 ASGD-KTVRIWDARTQKSQIIAT-K------GENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 184 ~~~d-g~i~iwD~~t~~~~~~~~-~------~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
++.. +.|...|........... . .....+++.|+|+.|++....+.+.-+|+..
T Consensus 154 ~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 154 FALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 6666 777777776553221111 1 1145799999999888887799999999873
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.66 E-value=1 Score=39.43 Aligned_cols=201 Identities=11% Similarity=0.105 Sum_probs=100.7
Q ss_pred ceEEeccc-cccccccccCCCCEEEEEECCCCCeEEEEECCC---cEEEEEeccCCCCcccEEEecccccEEeEEEecCC
Q psy9316 33 DYVKHFNT-HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDK---SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108 (264)
Q Consensus 33 ~~~~~~~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg---~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 108 (264)
+.|+.++. ...+..+.........++++++|+ |+.+...+ .-.++.+...+.......+. .-.....++++|.+
T Consensus 162 ~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~ 239 (433)
T 4hw6_A 162 DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQN 239 (433)
T ss_dssp SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTT
T ss_pred CCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCC
Confidence 44544443 333444444445688999999999 55554322 11222222222221111111 22334567788755
Q ss_pred CCeEEEEeCCCcEEEEECCCCCc-ceEE----------EeecCCC-----------cEEEEEeccC-CCccceEEEecc-
Q psy9316 109 PDLLSTASGDKTVRIWDARTQKS-QIML----------ASGSFDK-----------SVAIFALDKK-GDLNKEVVYRGH- 164 (264)
Q Consensus 109 ~~~l~s~s~dg~i~vwd~~~~~~-~~~~----------~~~~~d~-----------~i~i~~~~~~-~~~~~~~~~~~h- 164 (264)
+.+.++-..++.|+.+|..++.. ...+ ++-+.++ .|..++.+.. +.+.....+.+.
T Consensus 240 G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~ 319 (433)
T 4hw6_A 240 GKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQH 319 (433)
T ss_dssp CCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECT
T ss_pred CeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecC
Confidence 56665555678888888875433 1110 1112233 2333333211 111111111111
Q ss_pred --------------ccceeeEEEc--------CCCCCEEEEEeCCCcEEEEeCCCCcceeEee-----------------
Q psy9316 165 --------------TGSVDQLCWH--------ATNPDLLSTASGDKTVRIWDARTQKSQIIAT----------------- 205 (264)
Q Consensus 165 --------------~~~i~~i~~~--------~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~----------------- 205 (264)
...-..+++. ..++.++++-...+.|+.+|.. +.......
T Consensus 320 g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~ 398 (433)
T 4hw6_A 320 SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-GRVTTYAGRGNSREWGYVDGELRSQ 398 (433)
T ss_dssp TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-SEEEEEECCCTTCSSCCBCEETTTT
T ss_pred CCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-CCEEEEEeCCCCCccccCCCccccc
Confidence 0112346661 2344566666677888888853 33222211
Q ss_pred --cCceEEEEEc-CCCCEEEEeeCCCeEEEEEcc
Q psy9316 206 --KGENINITWA-PNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 206 --~~~~~~v~~s-p~g~~la~gs~d~~i~~~d~~ 236 (264)
...+..|+++ ++|..+++-..++.|+.+++.
T Consensus 399 ~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 399 ALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred cEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 1235689999 677777777888899988864
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.61 Score=43.04 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=42.2
Q ss_pred EEEECC-CCCeEEEEECCC-----------cEEEEEeccCCCCcccEEEe-cccccEEeEEEecCCCCeEEEEeC-CCcE
Q psy9316 56 SVAWSC-DGRRLASGSFDK-----------SVAIFALDKKGDLNKEVVYR-GHTGSVDQLCWHATNPDLLSTASG-DKTV 121 (264)
Q Consensus 56 ~l~~s~-~g~~l~s~s~dg-----------~i~v~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~l~s~s~-dg~i 121 (264)
..++.+ +++.++.|+.+. .+.+||...+. ......+. .+......+++.. ++.+++.|+. +..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~-w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI-VSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC-BCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc-EEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCce
Confidence 455667 888888887643 47778776533 22222221 2222333345544 4577888884 5689
Q ss_pred EEEECCCC
Q psy9316 122 RIWDARTQ 129 (264)
Q Consensus 122 ~vwd~~~~ 129 (264)
.+||..+.
T Consensus 268 ~~yd~~t~ 275 (656)
T 1k3i_A 268 SLYDSSSD 275 (656)
T ss_dssp EEEEGGGT
T ss_pred EEecCcCC
Confidence 99997653
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.16 E-value=1 Score=41.86 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=45.7
Q ss_pred eEEEcCCCCCEEEEEeCCC-------------------cEEEEeCCCCcceeEeec-----------CceEEEEEcCCCC
Q psy9316 170 QLCWHATNPDLLSTASGDK-------------------TVRIWDARTQKSQIIATK-----------GENINITWAPNGN 219 (264)
Q Consensus 170 ~i~~~~~~~~~i~s~~~dg-------------------~i~iwD~~t~~~~~~~~~-----------~~~~~v~~sp~g~ 219 (264)
.+.+.|.. .+++.+..++ .|..+|.++++..-.... ....-.....+|+
T Consensus 239 ~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 45666643 4666677665 399999999985332211 1112223333665
Q ss_pred ---EEEEeeCCCeEEEEEcccCCC
Q psy9316 220 ---TIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 220 ---~la~gs~d~~i~~~d~~~~~~ 240 (264)
.++.++.+|.++++|..++..
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCE
T ss_pred EEEEEEEECCCCeEEEEECCCCCE
Confidence 889999999999999877554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.07 E-value=1.6 Score=38.09 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=53.9
Q ss_pred ceEEecccc-ccccccccCCCCEEEEEECCCCCeEEEEECC-C--cEEEEEeccCCCCcccEEEecccccEEeEEEecCC
Q psy9316 33 DYVKHFNTH-NDIKEYQAHGSKVHSVAWSCDGRRLASGSFD-K--SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108 (264)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d-g--~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 108 (264)
+.|..++.. ..+..+.........++|+++|++|+.+... + ...++-+...+.......+. .......++++|.+
T Consensus 159 ~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~-~~~~p~giavdp~~ 237 (430)
T 3tc9_A 159 HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT-KGQNCNGAETHPIN 237 (430)
T ss_dssp EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE-ECSSCCCEEECTTT
T ss_pred CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec-cCCCceEEEEeCCC
Confidence 344444432 2334444444568899999999977776542 1 11222222233332111222 12335677888866
Q ss_pred CCeEEEEeCCCcEEEEECCCCC
Q psy9316 109 PDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 109 ~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
+.++++-..++.|..+|.+...
T Consensus 238 g~lyv~d~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 238 GELYFNSWNAGQVFRYDFTTQE 259 (430)
T ss_dssp CCEEEEETTTTEEEEEETTTTE
T ss_pred CEEEEEECCCCEEEEEECCCCc
Confidence 6666666678899999987543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=94.94 E-value=1.1 Score=36.64 Aligned_cols=157 Identities=12% Similarity=0.046 Sum_probs=82.5
Q ss_pred CCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceE--------
Q psy9316 63 GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIM-------- 134 (264)
Q Consensus 63 g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------- 134 (264)
+..|..++.++.+..++.. +.. ...+......+..+...+ + ..+..++.++.+..+|.+ ++....
T Consensus 107 ~~~l~v~t~~~~l~~~d~~--g~~--~~~~~~~~~~~~~~~~~~-~-g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~ 179 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD--GTE--KWRFKTKKAIYATPIVSE-D-GTIYVGSNDNYLYAINPD-GTEKWRFKTNDAIT 179 (330)
T ss_dssp TTEEEEECTTSEEEEECTT--SCE--EEEEECSSCCCSCCEECT-T-SCEEEECTTSEEEEECTT-SCEEEEEECSSCCC
T ss_pred CCEEEEEecCCEEEEEcCC--CCE--EEEEcCCCceeeeeEEcC-C-CEEEEEcCCCEEEEECCC-CCEeEEEecCCCce
Confidence 5667778888888888754 221 122233333344455543 3 235567788999999987 432111
Q ss_pred ----------EEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe
Q psy9316 135 ----------LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA 204 (264)
Q Consensus 135 ----------~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~ 204 (264)
+..++ +.+..++ ..+.. ..........+..+...++ +.+ ..++.++.+..+|..........
T Consensus 180 ~~~~~d~~g~l~v~t--~~l~~~d--~~g~~--~~~~~~~~~~~~~~~~~~~-g~l-~v~t~~~gl~~~~~~g~~~~~~~ 251 (330)
T 3hxj_A 180 SAASIGKDGTIYFGS--DKVYAIN--PDGTE--KWNFYAGYWTVTRPAISED-GTI-YVTSLDGHLYAINPDGTEKWRFK 251 (330)
T ss_dssp SCCEECTTCCEEEES--SSEEEEC--TTSCE--EEEECCSSCCCSCCEECTT-SCE-EEEETTTEEEEECTTSCEEEEEE
T ss_pred eeeEEcCCCEEEEEe--CEEEEEC--CCCcE--EEEEccCCcceeceEECCC-CeE-EEEcCCCeEEEECCCCCEeEEee
Confidence 11222 3444444 22211 1112222234666666553 234 44667888888886443332222
Q ss_pred ecC-ceEEEEEcCCCCEEEEeeCCCeEEEEEc
Q psy9316 205 TKG-ENINITWAPNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 205 ~~~-~~~~v~~sp~g~~la~gs~d~~i~~~d~ 235 (264)
... ....+...++| .|.+++.++.+..+|.
T Consensus 252 ~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 252 TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp CSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred CCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 222 22334555555 5557777888899985
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=94.74 E-value=2.4 Score=38.59 Aligned_cols=57 Identities=14% Similarity=0.014 Sum_probs=38.2
Q ss_pred CCCcEEEEeCCCCcceeEe-ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 186 GDKTVRIWDARTQKSQIIA-TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 186 ~dg~i~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
.+|.|..||+.+++..-.. .......-.....+..+++|+.|+.++.||.+++....
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW 521 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEE
Confidence 3688999999998753332 22222222223357788889999999999988755443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=94.70 E-value=1.7 Score=40.29 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=44.6
Q ss_pred EEEcCCCCCEEEEEeCCC-------------------cEEEEeCCCCcceeEeec-----------CceEEEEEcCCCC-
Q psy9316 171 LCWHATNPDLLSTASGDK-------------------TVRIWDARTQKSQIIATK-----------GENINITWAPNGN- 219 (264)
Q Consensus 171 i~~~~~~~~~i~s~~~dg-------------------~i~iwD~~t~~~~~~~~~-----------~~~~~v~~sp~g~- 219 (264)
+++.|.. .++..+..++ .|..+|.++++..-.... .......+..+|+
T Consensus 235 ~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 235 MAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp EEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred eEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 5666543 4555666665 499999999885333221 1222233444675
Q ss_pred --EEEEeeCCCeEEEEEcccCCC
Q psy9316 220 --TIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 220 --~la~gs~d~~i~~~d~~~~~~ 240 (264)
.+++++.+|.++++|..++..
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCE
T ss_pred EEEEEEECCCCEEEEEECCCCCE
Confidence 789999999999999876543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=94.40 E-value=1.8 Score=35.77 Aligned_cols=155 Identities=8% Similarity=0.001 Sum_probs=90.6
Q ss_pred CEEEEEECCCCCeEEEE-ECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCC-CcEEEEECCCCC
Q psy9316 53 KVHSVAWSCDGRRLASG-SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-KTVRIWDARTQK 130 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~-s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~d-g~i~vwd~~~~~ 130 (264)
....+++++.+..|+.+ ..++.|.+++.+ +.... ......-.....++++|.++.++.+.... +.|...+++...
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~--g~~~~-~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~ 154 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 154 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCC--CCceE-EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC
Confidence 45788888766655544 456788888765 22221 12222234567888887665444443222 556666654211
Q ss_pred cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee----c
Q psy9316 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT----K 206 (264)
Q Consensus 131 ~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~----~ 206 (264)
...++ ......-+.|+++|.++.++.+-...+.|..+|+.......... .
T Consensus 155 -~~~~~-------------------------~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~ 208 (316)
T 1ijq_A 155 -IYSLV-------------------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 208 (316)
T ss_dssp -EEEEE-------------------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTT
T ss_pred -eEEEE-------------------------ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCcc
Confidence 10110 01112345688888776777777778899999998654333322 2
Q ss_pred CceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 207 GENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 207 ~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
..+..+++. .+..+.+-...+.|..+|..+
T Consensus 209 ~~P~giav~-~~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 209 AHPFSLAVF-EDKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp SSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred CCcEEEEEE-CCEEEEEECCCCeEEEEeCCC
Confidence 346677775 355556667788888888644
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=94.29 E-value=1.9 Score=37.57 Aligned_cols=138 Identities=14% Similarity=0.165 Sum_probs=75.9
Q ss_pred cEEeEEEecC--CCCeEEEEeCCCcEEEEECCCCCcce--------EEEeecCCCcEEEEEeccCCCccceEEEe-----
Q psy9316 98 SVDQLCWHAT--NPDLLSTASGDKTVRIWDARTQKSQI--------MLASGSFDKSVAIFALDKKGDLNKEVVYR----- 162 (264)
Q Consensus 98 ~v~~i~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~--------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~----- 162 (264)
....++|+|+ ++++.+ +...+.|+.+|..++.... .-++-+.++.+.+-+............+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv-~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYW-VGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEE-ECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEE-EeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 3567888874 334444 4333889999986543221 11222345554443321100000000000
Q ss_pred ------ccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc-eeEeec---CceEEEEEcCCCCEE-EEeeCCCeEE
Q psy9316 163 ------GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIATK---GENINITWAPNGNTI-AVGNKEDLVT 231 (264)
Q Consensus 163 ------~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~-~~~~~~---~~~~~v~~sp~g~~l-a~gs~d~~i~ 231 (264)
.....-..++++|.++.++++-..++.|+.+|..++.. ...... .....++|+|+|++| ++-...+.|+
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~ 298 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY 298 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence 01122345777875667777766788999999986654 222111 123469999999954 5556678999
Q ss_pred EEEcc
Q psy9316 232 FIDVV 236 (264)
Q Consensus 232 ~~d~~ 236 (264)
.+|..
T Consensus 299 ~~~~d 303 (433)
T 4hw6_A 299 RVDYN 303 (433)
T ss_dssp EEEBC
T ss_pred EEeCC
Confidence 98864
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=94.21 E-value=0.51 Score=44.10 Aligned_cols=153 Identities=8% Similarity=0.001 Sum_probs=82.0
Q ss_pred EEEEEECCCCCeEEE-EECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCC-CcEEEEECCCCCc
Q psy9316 54 VHSVAWSCDGRRLAS-GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-KTVRIWDARTQKS 131 (264)
Q Consensus 54 V~~l~~s~~g~~l~s-~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~ 131 (264)
...|++++.+..|+. -...+.|.+++++ +.... .+..........++++|.++.++++-... +.|.+.+++....
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~d--g~~~~-~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~ 531 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRK-TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 531 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSS--SCCEE-EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecC--CCceE-EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe
Confidence 456778765544444 3456778887754 22211 11221223345667777555444432222 4555544432111
Q ss_pred ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee----cC
Q psy9316 132 QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT----KG 207 (264)
Q Consensus 132 ~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~----~~ 207 (264)
. .+ .......-+.|+++|.++.++++-...+.|..+|+.......... ..
T Consensus 532 ~-~l-------------------------~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~ 585 (699)
T 1n7d_A 532 Y-SL-------------------------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 585 (699)
T ss_dssp C-EE-------------------------SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCS
T ss_pred e-EE-------------------------EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCC
Confidence 0 00 000112234688888777788887788899999997644332221 12
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 208 ENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 208 ~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.+..+++..+ ..+.+....+.|..+|..
T Consensus 586 ~P~glavd~~-~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 586 HPFSLAVFED-KVFWTDIINEAIFSANRL 613 (699)
T ss_dssp SCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred CceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence 3456666554 444555677888888864
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.10 E-value=1.9 Score=34.84 Aligned_cols=141 Identities=11% Similarity=0.215 Sum_probs=80.1
Q ss_pred cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce--------------------EEEeecCCCcEEEEEeccCC
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--------------------MLASGSFDKSVAIFALDKKG 153 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--------------------~~~~~~~d~~i~i~~~~~~~ 153 (264)
+-...+..++|+|+++.++++...++.|...|.. ++... ++++...++.+.++.+...+
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 3445789999998776677667788888888886 33211 22333344556666665544
Q ss_pred Ccc--ceEEE----eccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCC----CCcceeEee--------cCceEEEEEc
Q psy9316 154 DLN--KEVVY----RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR----TQKSQIIAT--------KGENINITWA 215 (264)
Q Consensus 154 ~~~--~~~~~----~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~----t~~~~~~~~--------~~~~~~v~~s 215 (264)
... ....+ .........++|+|.+..+++ +.+.....+|.+. +........ .....++++.
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence 311 11111 112345688999997655555 4454444555443 111111111 1134578898
Q ss_pred CCC-CEEEEeeCCCeEEEEEcc
Q psy9316 216 PNG-NTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 216 p~g-~~la~gs~d~~i~~~d~~ 236 (264)
|.. .+++....+..+..+|..
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~ 203 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLV 203 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTT
T ss_pred CCCCeEEEEECCCCeEEEEcCC
Confidence 854 455667777888888854
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=2.9 Score=37.89 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=38.0
Q ss_pred CCCcEEEEeCCCCcceeEe-ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCC
Q psy9316 186 GDKTVRIWDARTQKSQIIA-TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPP 241 (264)
Q Consensus 186 ~dg~i~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~ 241 (264)
.+|.|..||+.+++..-.. .........+...+..+.+++.|+.++.||..++...
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 4588999999998753332 2222333333445777888999999999998765544
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=94.01 E-value=2.3 Score=35.40 Aligned_cols=161 Identities=9% Similarity=0.042 Sum_probs=89.0
Q ss_pred CCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-eE----------EEeecC
Q psy9316 72 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-IM----------LASGSF 140 (264)
Q Consensus 72 dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~----------~~~~~~ 140 (264)
...|+..+++... ........ .......+.|++.++.+..+-...+.|..++++..... .. ++....
T Consensus 12 ~~~I~~i~l~~~~-~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~ 89 (318)
T 3sov_A 12 RRDLRLVDATNGK-ENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 89 (318)
T ss_dssp EEEEEEEETTCTT-SCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred cCeEEEEECCCCc-eEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence 4568888776432 11112222 22346688898866666666666888888888754321 11 111112
Q ss_pred CC----------cEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEe-CCCcEEEEeCCCCcceeEee--cC
Q psy9316 141 DK----------SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS-GDKTVRIWDARTQKSQIIAT--KG 207 (264)
Q Consensus 141 d~----------~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~-~dg~i~iwD~~t~~~~~~~~--~~ 207 (264)
++ .|.++++ ++..... ........-..++..|.++.++.+-. ..+.|...++.......... ..
T Consensus 90 ~g~ly~~d~~~~~I~~~~~--dG~~~~~-l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~ 166 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNL--DGSLRKV-LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY 166 (318)
T ss_dssp TTEEEEEETTTTEEEEEET--TSCSCEE-EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred CCeEEEEECCCCEEEEEEC--CCCcEEE-EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCC
Confidence 22 2333332 2222111 11122233466788776655665542 35788888887654333322 23
Q ss_pred ceEEEEEcCCCCEE-EEeeCCCeEEEEEccc
Q psy9316 208 ENINITWAPNGNTI-AVGNKEDLVTFIDVVK 237 (264)
Q Consensus 208 ~~~~v~~sp~g~~l-a~gs~d~~i~~~d~~~ 237 (264)
.+..++++|++..| .+-+..+.|..+|...
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 56789999966655 5556788999999753
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=4.1 Score=37.46 Aligned_cols=157 Identities=10% Similarity=0.059 Sum_probs=92.7
Q ss_pred CCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 52 SKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
..+..|+|+++...|+-+. .++.|..++++. .... .+...-......+++++.++++..+-...+.|.+.+++...
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g--~~~~-~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~ 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNG--SALE-HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCE-EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCC--CCcE-EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc
Confidence 4678999999777776654 567888887653 2111 22222223456777776565566655556777777775432
Q ss_pred cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEE-eCCCcEEEEeCCCCcceeEe-ecCc
Q psy9316 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA-SGDKTVRIWDARTQKSQIIA-TKGE 208 (264)
Q Consensus 131 ~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~-~~dg~i~iwD~~t~~~~~~~-~~~~ 208 (264)
.. .++. .....-..|++.|..+.++.+- +..+.|...++......... ....
T Consensus 114 ~~-~l~~-------------------------~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~ 167 (628)
T 4a0p_A 114 RQ-VLVW-------------------------KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGR 167 (628)
T ss_dssp CE-EEEC-------------------------SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSS
T ss_pred EE-EEEe-------------------------CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCC
Confidence 11 1110 0111235677777666666554 22567877888765543332 2345
Q ss_pred eEEEEEcCCCCEE-EEeeCCCeEEEEEccc
Q psy9316 209 NINITWAPNGNTI-AVGNKEDLVTFIDVVK 237 (264)
Q Consensus 209 ~~~v~~sp~g~~l-a~gs~d~~i~~~d~~~ 237 (264)
+..++++++++.| .+-+..+.|..+|+..
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 7789999876555 4446678888888754
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=93.50 E-value=3.3 Score=35.59 Aligned_cols=157 Identities=8% Similarity=-0.001 Sum_probs=88.9
Q ss_pred CCEEEEEECCCCCeEEEE-ECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeC-CCcEEEEECCCC
Q psy9316 52 SKVHSVAWSCDGRRLASG-SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG-DKTVRIWDARTQ 129 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~-s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~-dg~i~vwd~~~~ 129 (264)
.....|++++.+..|+.+ ...+.|.+.+++ +.... .+....-.....++++|.++.++.+-.. .+.|...+++..
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~--g~~~~-~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTT--TCSEE-EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCC--CCceE-EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence 356788888855555544 456778877654 33222 2222233446788888766544443322 355666665432
Q ss_pred CcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee----
Q psy9316 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT---- 205 (264)
Q Consensus 130 ~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~---- 205 (264)
... .++ ......-+.|++++.++.+..+-...+.|..+|+..........
T Consensus 236 ~~~-~~~-------------------------~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~ 289 (400)
T 3p5b_L 236 DIY-SLV-------------------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 289 (400)
T ss_dssp SCE-EEE-------------------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSST
T ss_pred ccE-EEE-------------------------ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCC
Confidence 111 110 11112345688887776777776778899999997655433322
Q ss_pred cCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 206 KGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 206 ~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
...+..++.. .+..+.+....+.|..+|..++
T Consensus 290 l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 290 LAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp TSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred CCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 2346677763 3445555567778888885443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.90 E-value=4 Score=34.83 Aligned_cols=155 Identities=10% Similarity=0.031 Sum_probs=88.8
Q ss_pred CEEEEEECCCCCeEEEE-ECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCC-CcEEEEECCCCC
Q psy9316 53 KVHSVAWSCDGRRLASG-SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-KTVRIWDARTQK 130 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~-s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~d-g~i~vwd~~~~~ 130 (264)
....+++++.+..|+.. ...+.|.+++++ +.... ......-.....++++|.++.++.+-... +.|..++++...
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~d--g~~~~-~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLD--GAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTT--SCSCE-EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCC--CCceE-EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 34567888766555544 345667776654 32222 22222334567888887665555443334 566666665321
Q ss_pred cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--ecCc
Q psy9316 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--TKGE 208 (264)
Q Consensus 131 ~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~~~~ 208 (264)
.. .++ ......-+.|+++|.++.++++-...+.|..+|+......... ....
T Consensus 237 ~~-~~~-------------------------~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~ 290 (386)
T 3v65_B 237 RR-IIA-------------------------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPH 290 (386)
T ss_dssp CE-EEE-------------------------CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSS
T ss_pred cE-EEE-------------------------ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCC
Confidence 11 110 0111223568888766677777777889999998765432222 2345
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 209 NINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 209 ~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
+..+++. .+..+.+....+.|..+|..+
T Consensus 291 P~giav~-~~~ly~td~~~~~V~~~~~~~ 318 (386)
T 3v65_B 291 PFAITVF-EDSLYWTDWHTKSINSANKFT 318 (386)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred ceEEEEE-CCEEEEeeCCCCeEEEEECCC
Confidence 6778873 455556667788888888443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.87 E-value=3.8 Score=34.45 Aligned_cols=155 Identities=10% Similarity=0.031 Sum_probs=90.8
Q ss_pred CEEEEEECCCCCeEEEE-ECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCC-CcEEEEECCCCC
Q psy9316 53 KVHSVAWSCDGRRLASG-SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-KTVRIWDARTQK 130 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~-s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~d-g~i~vwd~~~~~ 130 (264)
....+++++.+..|+.+ ...+.|.+.+++ +.... ......-.....++++|.++.++.+-... +.|...+++...
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~d--G~~~~-~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLD--GAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT--SCSCE-EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCC--CCceE-EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence 35678888766655544 456788888765 32222 22223334567888888665555544444 666666665321
Q ss_pred cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--ecCc
Q psy9316 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--TKGE 208 (264)
Q Consensus 131 ~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~~~~ 208 (264)
.. .++ ......-+.|+++|.++.+..+-...+.|..+|+......... ....
T Consensus 194 ~~-~~~-------------------------~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~ 247 (349)
T 3v64_C 194 RR-IIA-------------------------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPH 247 (349)
T ss_dssp CE-ESC-------------------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSS
T ss_pred cE-EEE-------------------------ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCC
Confidence 11 000 0011234568888877777777777889999998765432222 2345
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 209 NINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 209 ~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
+..+++. .+..+.+-...+.|..+|..+
T Consensus 248 P~giav~-~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 248 PFAITVF-EDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred ceEEEEE-CCEEEEecCCCCeEEEEEccC
Confidence 6777773 455556666778888887433
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=92.09 E-value=5.8 Score=34.74 Aligned_cols=152 Identities=11% Similarity=0.132 Sum_probs=87.3
Q ss_pred EEEeecCceEEecccc--ccccccccC----CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCc---------ccE
Q psy9316 26 HLVCKIDDYVKHFNTH--NDIKEYQAH----GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN---------KEV 90 (264)
Q Consensus 26 ~~~~~~d~~~~~~~~~--~~~~~~~~h----~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~---------~~~ 90 (264)
.++-..++.+|..+.. ..++.+... -+.|..+..+|+|++|+..+. ..|.|..+..+.... ...
T Consensus 34 ~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ 112 (452)
T 3pbp_A 34 RIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIF 112 (452)
T ss_dssp EEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEE
T ss_pred EEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccccccee
Confidence 3455666777764432 234444332 125788999999999999864 578888775221111 011
Q ss_pred EEec------ccccEEeEEEecCCC--CeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEe
Q psy9316 91 VYRG------HTGSVDQLCWHATNP--DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYR 162 (264)
Q Consensus 91 ~~~~------h~~~v~~i~~~~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~ 162 (264)
.+.- ....|..+-|||.+. ..|++-..|+.|++||+....... . +++.... .+-..
T Consensus 113 ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P----------~---~L~k~~~---~fg~d 176 (452)
T 3pbp_A 113 HYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKP----------I---VLNKPNN---SFGLD 176 (452)
T ss_dssp EEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCC----------E---EESCCCS---EEESC
T ss_pred EEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCC----------c---chhcccc---ccCCC
Confidence 2221 246799999999654 377788999999999998632211 1 2221100 01111
Q ss_pred ccccceeeEEEcCCCCCE-EEEEeCCCcEEEEe
Q psy9316 163 GHTGSVDQLCWHATNPDL-LSTASGDKTVRIWD 194 (264)
Q Consensus 163 ~h~~~i~~i~~~~~~~~~-i~s~~~dg~i~iwD 194 (264)
.....|.+++|.+..-.+ +++...+|-|+-..
T Consensus 177 ~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 177 ARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp SSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred cccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 223567788888743222 33344778777543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=7.2 Score=35.72 Aligned_cols=184 Identities=8% Similarity=-0.024 Sum_probs=102.9
Q ss_pred CCCEEEEEECCCCCeEEEEEC-CCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC
Q psy9316 51 GSKVHSVAWSCDGRRLASGSF-DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 129 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~-dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~ 129 (264)
-..+..++|++.+..|+-+.. .+.|..++++.. .....+...--.....+++++.+.++..+-...+.|.+.+++..
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~--~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~ 116 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT--ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 116 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCC--CceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence 345789999997777776654 567888876532 11112233222457788888766666666667889999998754
Q ss_pred CcceE----------EEeecCCCcEEEEE---------eccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcE
Q psy9316 130 KSQIM----------LASGSFDKSVAIFA---------LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 190 (264)
Q Consensus 130 ~~~~~----------~~~~~~d~~i~i~~---------~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i 190 (264)
....+ ++.-..++.+.+-| ...++..... ........-+.|++.+..+.++.+-...+.|
T Consensus 117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~-l~~~~~~~P~Glald~~~~~LY~aD~~~~~I 195 (619)
T 3s94_A 117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI-IINSEIYWPNGLTLDYEEQKLYWADAKLNFI 195 (619)
T ss_dssp SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-EECSSCSSEEEEEEETTTTEEEEEETTTCCE
T ss_pred CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEE-EEeCCCCCCcEEEEEccCCEEEEEeCCCCeE
Confidence 32111 12212223333222 2222322211 1111222346788887666777777778899
Q ss_pred EEEeCCCCcceeEe--ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 191 RIWDARTQKSQIIA--TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 191 ~iwD~~t~~~~~~~--~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
..+|+......... ....+..+++..+ ..+.+-..++.|...|..++
T Consensus 196 ~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 196 HKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp EEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred EEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 99998765432221 2234566777665 45555567788888887554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.94 E-value=8.6 Score=36.42 Aligned_cols=157 Identities=8% Similarity=-0.006 Sum_probs=89.1
Q ss_pred CCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCC-CcEEEEECCCC
Q psy9316 52 SKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-KTVRIWDARTQ 129 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~d-g~i~vwd~~~~ 129 (264)
.....|++++.++.|+.+. ..+.|.+.+++ +.... .+....-.....|+++|..+.++.+-... +.|...+++..
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld--G~~~~-~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCC--CCeEE-EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence 3456888988776666554 56788888765 33222 22233334577888888655444433222 55666665432
Q ss_pred CcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee----
Q psy9316 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT---- 205 (264)
Q Consensus 130 ~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~---- 205 (264)
... .++ ......-+.|++.+..+.++.+-...+.|...|+..........
T Consensus 548 ~~~-~lv-------------------------~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~ 601 (791)
T 3m0c_C 548 DIY-SLV-------------------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 601 (791)
T ss_dssp CEE-EEE-------------------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT
T ss_pred ceE-EEE-------------------------eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCc
Confidence 111 110 11112345677777666676766677889999987665433322
Q ss_pred cCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 206 KGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 206 ~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
......|++.. +..+.+-...+.|...|...+
T Consensus 602 l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 602 LAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp TSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred cCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence 12456677643 344455566778888875443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.89 E-value=12 Score=33.26 Aligned_cols=168 Identities=11% Similarity=0.014 Sum_probs=89.4
Q ss_pred CEEEEEE-------CCCCCeEEEEECCC-c------EEEEEeccCCCCcc-c--EEEecccccEEeEEEecCCCCeEEEE
Q psy9316 53 KVHSVAW-------SCDGRRLASGSFDK-S------VAIFALDKKGDLNK-E--VVYRGHTGSVDQLCWHATNPDLLSTA 115 (264)
Q Consensus 53 ~V~~l~~-------s~~g~~l~s~s~dg-~------i~v~~~~~~~~~~~-~--~~~~~h~~~v~~i~~~~~~~~~l~s~ 115 (264)
....|+| +++|+.|+.+...+ . |.+++-...+.... . ..+... .....++.+|.++.++++-
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd 265 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNS 265 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEE
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEE
Confidence 4789999 99999777776654 2 44554333223321 0 112211 2345677788776777766
Q ss_pred eCCCcEEEEECC-------CCCcceEEEeecCCCcE-EEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCC
Q psy9316 116 SGDKTVRIWDAR-------TQKSQIMLASGSFDKSV-AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD 187 (264)
Q Consensus 116 s~dg~i~vwd~~-------~~~~~~~~~~~~~d~~i-~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~d 187 (264)
..++.|..+|++ ++..-..... ...+.. .++. ......-..|+|+|.+..++++-...
T Consensus 266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~-~~~g~~~~l~~-------------~~~~~~p~~ia~~p~G~~lYvaD~~~ 331 (496)
T 3kya_A 266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVK-NNPNTFKQLFT-------------IADPSWEFQIFIHPTGKYAYFGVINN 331 (496)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCCCCBGG-GCTTTEEEEEE-------------CSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred CCCCEEEEEecccccccccCceeeccccc-ccccccceeEe-------------cCCCCCceEEEEcCCCCEEEEEeCCC
Confidence 678889888886 3332000000 000000 0010 01112235688888765456666777
Q ss_pred CcEEEEeCC--CCcc---eeEeec----------------CceE-EEEEc-------CCCCEEEEeeCCCeEEEEEc
Q psy9316 188 KTVRIWDAR--TQKS---QIIATK----------------GENI-NITWA-------PNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 188 g~i~iwD~~--t~~~---~~~~~~----------------~~~~-~v~~s-------p~g~~la~gs~d~~i~~~d~ 235 (264)
..|+.+|.. ++.. ...... ..+. .+... ++|.++++-+.++.|+.++.
T Consensus 332 h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 332 HYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp TEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred CEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 888886543 3221 111110 1233 34444 56777777788888998883
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=86.60 E-value=5.2 Score=36.22 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=28.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCcceeEee-cCce--EEEEEcCCCCEEE
Q psy9316 179 DLLSTASGDKTVRIWDARTQKSQIIAT-KGEN--INITWAPNGNTIA 222 (264)
Q Consensus 179 ~~i~s~~~dg~i~iwD~~t~~~~~~~~-~~~~--~~v~~sp~g~~la 222 (264)
.+++.++.||.++.||.++++..-... ...+ .-+.+.++|+.++
T Consensus 476 g~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 476 GLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 456668899999999999998644332 2222 2245666776443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=86.52 E-value=13 Score=31.06 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=40.5
Q ss_pred CCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccE---EEecccccEEeEEEecC---CCCeEEEEeCC-----Cc
Q psy9316 52 SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV---VYRGHTGSVDQLCWHAT---NPDLLSTASGD-----KT 120 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~---~~~~h~~~v~~i~~~~~---~~~~l~s~s~d-----g~ 120 (264)
.....++|.|+|+.++ +..+|.|.+++ + +...... ++..-......++++|+ +..+.++-... ..
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~-~--g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR-E--GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE-T--TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE-C--CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 3567999999998554 45679999887 2 2211100 01111345788899885 33344333322 44
Q ss_pred EEEEECC
Q psy9316 121 VRIWDAR 127 (264)
Q Consensus 121 i~vwd~~ 127 (264)
|..++..
T Consensus 107 v~r~~~~ 113 (352)
T 2ism_A 107 VVRLRHL 113 (352)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 5555554
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=85.27 E-value=19 Score=31.57 Aligned_cols=158 Identities=12% Similarity=0.167 Sum_probs=86.0
Q ss_pred CCCCeEEEEECCCcEEEEEeccCCCCcccEEEecc----cccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEE
Q psy9316 61 CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH----TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLA 136 (264)
Q Consensus 61 ~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h----~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 136 (264)
.+|..|+.+ .++.||.-++...... ..++.. -..+..+..+|.+ .+++. ..+..|.|-.+-.+.....
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Y---k~L~~~~~i~f~~i~qlvlSpsG-~lLAl-~g~~~V~Vv~LP~~~~~~~-- 101 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLY---HSLNFSRHLVLDDTFHVISSTSG-DLLCL-FNDNEIFVMEVPWGYSNVE-- 101 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSC---EEEECTTTCCCCTTCEEEECTTS-SEEEE-ECSSEEEEEECCTTCSCCC--
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcc---eEEecCcccccCceeEEEECCCC-CEEEE-ecCCeEEEEEecCccccCc--
Confidence 466666665 4577776666532222 122221 2246778888855 55554 4566788877752211000
Q ss_pred eecCCCc--EEEEEeccCCCccceEEEeccccceeeEEEcCCC--CCEEEEEeCCCcEEEEeCCCCcc--eeE------e
Q psy9316 137 SGSFDKS--VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN--PDLLSTASGDKTVRIWDARTQKS--QII------A 204 (264)
Q Consensus 137 ~~~~d~~--i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~--~~~i~s~~~dg~i~iwD~~t~~~--~~~------~ 204 (264)
..+.++. ++-|.+.... .....+|..+.|||.. +..|+.-..|+.|++||+..... ... .
T Consensus 102 ~~~~~~~~q~~ty~l~~~~--------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~f 173 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEE--------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSF 173 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC----------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEE
T ss_pred ccccccccceeEEEcCCcc--------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhcccccc
Confidence 0000011 2233332110 1134689999999963 34677778999999999986221 100 1
Q ss_pred ec----CceEEEEEcCCCCEEEEee--CCCeEEEEE
Q psy9316 205 TK----GENINITWAPNGNTIAVGN--KEDLVTFID 234 (264)
Q Consensus 205 ~~----~~~~~v~~sp~g~~la~gs--~d~~i~~~d 234 (264)
.. ..+.+++|++++-.|.+.+ .+|-|+=+-
T Consensus 174 g~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 174 GLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred CCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 11 3467889998887665544 666665543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=85.11 E-value=22 Score=32.35 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=38.2
Q ss_pred CCCcEEEEeCCCCcceeEee-cCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCC
Q psy9316 186 GDKTVRIWDARTQKSQIIAT-KGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242 (264)
Q Consensus 186 ~dg~i~iwD~~t~~~~~~~~-~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~ 242 (264)
.+|.+..||+.+++..-... ......-.....+..+.+++.|+.++.||.+++....
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence 45889999999987533322 2222221233467788889999999999988765544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=84.34 E-value=17 Score=30.41 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=31.8
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCccc-----EEEecccccEEeEEEecC
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE-----VVYRGHTGSVDQLCWHAT 107 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~-----~~~~~h~~~v~~i~~~~~ 107 (264)
....|+|.|+|++|+.+...|.|.+++.+ +..... .+...-......++++|+
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~--g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG--KGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT--TEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC--CceeeEecCCcccccCCCCCceeEEECCC
Confidence 45789999999945555678999988732 211100 011111234578888885
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=84.33 E-value=24 Score=32.17 Aligned_cols=157 Identities=9% Similarity=0.023 Sum_probs=87.3
Q ss_pred CCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 52 SKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
..+.+++|++.+..|+-+. ..+.|..++.+. ... ..+....-.....+++...+.++..+-+..+.|.+.+++...
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g--~~~-~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG--SGS-QFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM 425 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSC-EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCC--Ccc-EEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence 3578899998666666554 467788877653 211 122322234556777776555566665567777777776432
Q ss_pred cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeC-CCcEEEEeCCCCcceeEee--cC
Q psy9316 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG-DKTVRIWDARTQKSQIIAT--KG 207 (264)
Q Consensus 131 ~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~-dg~i~iwD~~t~~~~~~~~--~~ 207 (264)
. ..++. .....-..|++.|..+.++.+-.. .+.|.-.++.......... ..
T Consensus 426 ~-~~l~~-------------------------~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~ 479 (619)
T 3s94_A 426 R-KILIS-------------------------EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLG 479 (619)
T ss_dssp C-EEEEC-------------------------TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred E-EEEEE-------------------------CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCC
Confidence 1 11110 011223456677755555555322 3566666665543322222 23
Q ss_pred ceEEEEEcCCCCEEEE-eeCCCeEEEEEccc
Q psy9316 208 ENINITWAPNGNTIAV-GNKEDLVTFIDVVK 237 (264)
Q Consensus 208 ~~~~v~~sp~g~~la~-gs~d~~i~~~d~~~ 237 (264)
.+..+++++++..|.. -+..+.|..+++..
T Consensus 480 ~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG 510 (619)
T 3s94_A 480 WPNGLALDYDEGKIYWGDAKTDKIEVMNTDG 510 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEESSS
T ss_pred CCeeeEEcccCCEEEEEECCCCEEEEEecCC
Confidence 5677888876555544 45567788887643
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=83.55 E-value=19 Score=30.23 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=31.5
Q ss_pred CCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEE---ecccccEEeEEEecC
Q psy9316 52 SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY---RGHTGSVDQLCWHAT 107 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~---~~h~~~v~~i~~~~~ 107 (264)
.....++|.|+|+.++ +..+|.|.+++ ..+. .....+ ..-......++++|+
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d--~~G~-~~~~~~~v~~~g~~g~~gia~~pd 83 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS--PSGK-KLVASFDVANVGEAGLLGLALHPE 83 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC--SSCE-EEEEECCCCCSTTCSEEEEEECTT
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe--CCCc-eEeeccceeecCCCceeeEEeCCC
Confidence 3567899999998554 45679998885 2232 111111 111245788899885
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=82.81 E-value=26 Score=31.86 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=34.4
Q ss_pred CcEEEEeCCCCcceeEeec--C---------ceEEEEEc-CCC---CEEEEeeCCCeEEEEEcccCCC
Q psy9316 188 KTVRIWDARTQKSQIIATK--G---------ENINITWA-PNG---NTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 188 g~i~iwD~~t~~~~~~~~~--~---------~~~~v~~s-p~g---~~la~gs~d~~i~~~d~~~~~~ 240 (264)
++|..+|.++++..-.... . ...-+... .+| +.++.++.+|.++.+|..++..
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence 3789999999875332211 1 11122332 577 5678889999999999876543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=81.98 E-value=31 Score=31.58 Aligned_cols=183 Identities=9% Similarity=0.006 Sum_probs=102.7
Q ss_pred CCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEec------ccccEEeEEEecCCCCeEEEEeCCCcEEEE
Q psy9316 52 SKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRG------HTGSVDQLCWHATNPDLLSTASGDKTVRIW 124 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~------h~~~v~~i~~~~~~~~~l~s~s~dg~i~vw 124 (264)
..+.+|+|++..+.|+-+. ..+.|..++.+ +.... .++.. ....+..+++...+.++..+-+..+.|.+.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~--g~~~~-~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~ 416 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQED--GSQGF-TVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVT 416 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCE-EEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcC--CCCce-EEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEE
Confidence 4688999999777776654 45678777654 22211 12221 223577888877665566666667778777
Q ss_pred ECCCCCc----------ceEEEeecCCCcE----------EEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEE
Q psy9316 125 DARTQKS----------QIMLASGSFDKSV----------AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA 184 (264)
Q Consensus 125 d~~~~~~----------~~~~~~~~~d~~i----------~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~ 184 (264)
+++.... ..-++.-...|.+ +|+...+++...... ....-..-+.|++.+....+..+-
T Consensus 417 ~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l-~~~~l~~P~gla~D~~~~~LYw~D 495 (628)
T 4a0p_A 417 RLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVL-FFSGLSKPIALALDSRLGKLFWAD 495 (628)
T ss_dssp ETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEE-ECSSCSCEEEEEEETTTTEEEEEE
T ss_pred ECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEE-EeccCCCccEEEEeCCCCEEEEEe
Confidence 7753211 1111221112222 344333444332211 121122346688877655666666
Q ss_pred eCCCcEEEEeCCCCcceeEe--ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 185 SGDKTVRIWDARTQKSQIIA--TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 185 ~~dg~i~iwD~~t~~~~~~~--~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
+..+.|...|+......... ....+..++... +..+.+-...+.|...|...+.
T Consensus 496 ~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~ 551 (628)
T 4a0p_A 496 SDLRRIESSDLSGANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGRE 551 (628)
T ss_dssp TTTTEEEEEETTSCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSS
T ss_pred CCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCC
Confidence 66789999999765543332 234567777654 5555666677788888866443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=81.75 E-value=30 Score=31.29 Aligned_cols=49 Identities=24% Similarity=0.385 Sum_probs=32.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcceeEee-cCceE--EEEEcCCCC-EEEEeeC
Q psy9316 178 PDLLSTASGDKTVRIWDARTQKSQIIAT-KGENI--NITWAPNGN-TIAVGNK 226 (264)
Q Consensus 178 ~~~i~s~~~dg~i~iwD~~t~~~~~~~~-~~~~~--~v~~sp~g~-~la~gs~ 226 (264)
+.+++.++.||.++.||.++++..-... ...+. -+.|..+|+ |+++.+.
T Consensus 497 gglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 497 GNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence 3466678999999999999998644332 33232 266777786 5555443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=81.41 E-value=27 Score=30.51 Aligned_cols=54 Identities=11% Similarity=0.201 Sum_probs=30.9
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec------ccccEEeEEEecC
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG------HTGSVDQLCWHAT 107 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~------h~~~v~~i~~~~~ 107 (264)
....|+|.|+|+.+++-...+.|.+++.. .+.......+.. -......++|+|+
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~-~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECC-CCcEeEEecCCccccccCCCCceeEEEECCC
Confidence 56799999999877765333467777532 122211111111 1234668999885
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=80.79 E-value=37 Score=31.69 Aligned_cols=154 Identities=8% Similarity=0.058 Sum_probs=88.9
Q ss_pred CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe---------cccccEEeEEEecCCCCeEEEEeCCCcE
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR---------GHTGSVDQLCWHATNPDLLSTASGDKTV 121 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~---------~h~~~v~~i~~~~~~~~~l~s~s~dg~i 121 (264)
...|.++..+++|..- .|+.++-|..|+... +... .+. -....|.++...+++ +++-.|+.++-+
T Consensus 356 ~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~-~~~~---~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl 429 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLW-IGTNDGGLNLYNPIT-QRFT---SYTLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGL 429 (795)
T ss_dssp CSSEEEEEECTTSCEE-EEESSSCEEEECTTT-CCEE---EECCC------CCSCSCEEEEEEETTT-TEEEEEETTTEE
T ss_pred CCeeEEEEECCCCCEE-EEECCCCeEEEcCCC-CcEE---EEecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCce
Confidence 3469999999888754 466776788886542 1111 111 013468888776533 425567777778
Q ss_pred EEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce
Q psy9316 122 RIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 201 (264)
Q Consensus 122 ~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~ 201 (264)
..+|.++++... +... ... .....|.++...+. +.+.+. +. +-+..||..+++..
T Consensus 430 ~~~d~~~~~~~~-------------~~~~-~~~--------l~~~~v~~i~~d~~-g~lwig-t~-~Gl~~~~~~~~~~~ 484 (795)
T 4a2l_A 430 SILHRNSGQVEN-------------FNQR-NSQ--------LVNENVYAILPDGE-GNLWLG-TL-SALVRFNPEQRSFT 484 (795)
T ss_dssp EEEETTTCCEEE-------------ECTT-TSC--------CSCSCEEEEEECSS-SCEEEE-ES-SCEEEEETTTTEEE
T ss_pred eEEeCCCCcEEE-------------eecC-CCC--------cCCCeeEEEEECCC-CCEEEE-ec-CceeEEeCCCCeEE
Confidence 889987654211 1000 000 11245777776653 345443 34 45888998876542
Q ss_pred eEee--------cCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 202 IIAT--------KGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 202 ~~~~--------~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.... ...+.++...++|+..+... + -+..||..+
T Consensus 485 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~ 526 (795)
T 4a2l_A 485 TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEG 526 (795)
T ss_dssp ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEET
T ss_pred EccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCC
Confidence 2211 13467788888888765444 4 467788654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 264 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-11 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-11 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 7e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.003 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-09 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 8e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.004 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.004 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 6e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.002 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.9 bits (190), Expect = 3e-17
Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 31/173 (17%)
Query: 24 QFHLVCKIDDYVKHFNTHND--IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALD 81
+ + D K ++ + + H S ++++ + +G A+GS D + +F L
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 82 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFD 141
+L G + + + + LL D +WDA
Sbjct: 257 ADQELMTYSHDNIICG-ITSVSFSKSG-RLLLAGYDDFNCNVWDALKAD----------- 303
Query: 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
+ V GH V L + ++T S D ++IW+
Sbjct: 304 ---------------RAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.9 bits (159), Expect = 4e-13
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 7/113 (6%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
P +GS D + + SV++S GR L +G D
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYS---HDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 73 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125
+ ++ K ++ V GH V L + ++T S D ++IW+
Sbjct: 292 FNCNVWDALKA---DRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.2 bits (126), Expect = 8e-09
Identities = 30/190 (15%), Positives = 60/190 (31%), Gaps = 31/190 (16%)
Query: 37 HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96
T + H V S++ + D R SG+ D S ++ + + + GH
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ---TFTGHE 226
Query: 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLN 156
++ +C+ N + +T S D T R++D R + +
Sbjct: 227 SDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMT---------------------- 263
Query: 157 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--SQIIATKGENINITW 214
+ + + + + LL D +WDA + +
Sbjct: 264 --YSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
Query: 215 APNGNTIAVG 224
+G +A G
Sbjct: 321 TDDGMAVATG 330
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.0 bits (115), Expect = 2e-07
Identities = 32/208 (15%), Positives = 71/208 (34%), Gaps = 24/208 (11%)
Query: 45 KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 104
+ + H +K++++ W D R L S S D + I+ ++ + V +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAY 105
Query: 105 HATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
+ + ++ D I++ +T++ + ++ + + D
Sbjct: 106 A-PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 165 TGSVDQ------------------LCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIAT 205
T ++ A + L + + D + ++WD R Q
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 206 KGENIN-ITWAPNGNTIAVGNKEDLVTF 232
+IN I + PNGN A G+ +
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRL 252
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.5 bits (171), Expect = 1e-14
Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 13/203 (6%)
Query: 34 YVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR 93
+ T +K + H V V + DG +AS S D++V ++ + K + R
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE---LR 182
Query: 94 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKG 153
H V+ + W + + + + K L SGS DK++ ++ +
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSG----KPGPFLLSGSRDKTIKMWDVSTGM 238
Query: 154 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--SQIIATKGENIN 211
L GH V + +H+ +LS + DKT+R+WD + ++ + A + +
Sbjct: 239 CLMT---LVGHDNWVRGVLFHSGGKFILS-CADDKTLRVWDYKNKRCMKTLNAHEHFVTS 294
Query: 212 ITWAPNGNTIAVGNKEDLVTFID 234
+ + + G+ + V +
Sbjct: 295 LDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.3 bits (147), Expect = 1e-11
Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 56/202 (27%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD---------- 62
+ + L+ S S V V T E + H V ++W+ +
Sbjct: 152 NQDGTLIASCSNDQTV-----RVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
Query: 63 ----------GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLL 112
G L SGS DK++ ++ + L GH V + +H+ +L
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT---LVGHDNWVRGVLFHSGGKFIL 263
Query: 113 STASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 172
S + DKT+R+WD + ++ H V L
Sbjct: 264 S-CADDKTLRVWDYKNKR--------------------------CMKTLNAHEHFVTSLD 296
Query: 173 WHATNPDLLSTASGDKTVRIWD 194
+H T P + T S D+TV++W+
Sbjct: 297 FHKTAP-YVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.5 bits (132), Expect = 1e-09
Identities = 35/198 (17%), Positives = 76/198 (38%), Gaps = 27/198 (13%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H S V V + + S S D ++ ++ + + E +GHT SV + + +
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHS 70
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIM------------------LASGSFDKSVAIFAL 149
L S ++ + + M + S S DK++ ++ +
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 150 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--IIATKG 207
+ + GH V + + + L+++ S D+TVR+W T++ + + +
Sbjct: 131 QTGYCVK---TFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRH 186
Query: 208 ENINITWAPNGNTIAVGN 225
I+WAP + ++
Sbjct: 187 VVECISWAPESSYSSISE 204
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.8 bits (112), Expect = 4e-07
Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 18/162 (11%)
Query: 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGS----------- 139
GH V ++ +H ++ +AS D T+++WD T + L +
Sbjct: 12 ALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 140 ----FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 195
S + + + N D + +AS DKT+++W+
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 196 RTQKSQ--IIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
+T + + +G IA + + V V
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.4 bits (168), Expect = 3e-14
Identities = 38/183 (20%), Positives = 68/183 (37%), Gaps = 41/183 (22%)
Query: 28 VCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN 87
V + ++ + H V+SV ++ DG+ + SGS D+SV ++ L + +
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290
Query: 88 ---------KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASG 138
EV Y GH V + N + + + S D+ V WD ++
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATT-QNDEYILSGSKDRGVLFWDKKSGN-------- 341
Query: 139 SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH---ATNPD--LLSTASGDKTVRIW 193
++ +GH SV + + P+ + +T SGD RIW
Sbjct: 342 ------------------PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
Query: 194 DAR 196
+
Sbjct: 384 KYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.9 bits (138), Expect = 2e-10
Identities = 32/214 (14%), Positives = 70/214 (32%), Gaps = 28/214 (13%)
Query: 34 YVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK----E 89
+ T DG+ +A+GS D++V ++ + + +
Sbjct: 188 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN 247
Query: 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFAL 149
GH SV + + + + + S D++V++W+ + ++ + +
Sbjct: 248 ESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT------- 299
Query: 150 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--------SQ 201
EV Y GH V + N + + + S D+ V WD ++
Sbjct: 300 -------CEVTYIGHKDFVLSVATT-QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 351
Query: 202 IIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
+ + + P N A G+ +
Sbjct: 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.0 bits (115), Expect = 2e-07
Identities = 50/264 (18%), Positives = 101/264 (38%), Gaps = 46/264 (17%)
Query: 32 DDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91
D + + + + SV +S DG+ LA+G+ D+ + I+ ++ + +
Sbjct: 102 DSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG 161
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI------------------ 133
+ + + D L + SGD+TVRIWD RT + +
Sbjct: 162 HEQD----IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 217
Query: 134 -MLASGSFDKSVAIFALDKKGDLNK----EVVYRGHTGSVDQLCWHATNPDLLSTASGDK 188
+A+GS D++V ++ + + + GH SV + + + + + S D+
Sbjct: 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDR 276
Query: 189 TVRIWDARTQKSQ--------------IIATKGENINITWAPNGNTIAVGNKEDLVTFID 234
+V++W+ + ++ I K +++ N I G+K+ V F D
Sbjct: 277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 336
Query: 235 VVKSLPPRERTLTSRGHLMETRSL 258
L +GH S+
Sbjct: 337 KKS----GNPLLMLQGHRNSVISV 356
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.4 bits (103), Expect = 7e-06
Identities = 30/224 (13%), Positives = 64/224 (28%), Gaps = 39/224 (17%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALD---------------KKGDLNKEVVYRG 94
H S V V +S DG LA+G +K+ ++ + K +
Sbjct: 61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119
Query: 95 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIF------- 147
+ +C+ L + A + I+ S+ F
Sbjct: 120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 179
Query: 148 -------ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200
+ + V + + ++ S D+ VR+WD+ T
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239
Query: 201 Q---------IIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
K ++ + +G ++ G+ + V ++
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 283
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.1 bits (84), Expect = 0.001
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVA------WSCDGRRL 66
+ + + SGS+ V + N + Q H + V SVA +
Sbjct: 317 TQNDEYILSGSKDRGV-----LFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371
Query: 67 ASGSFDKSVAIFALDK 82
A+GS D I+ K
Sbjct: 372 ATGSGDCKARIWKYKK 387
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.5 bits (150), Expect = 6e-12
Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 5/106 (4%)
Query: 20 PSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFA 79
P+G + + + D + H S V S+ ++ G+ S D + +
Sbjct: 234 PTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293
Query: 80 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125
+ + SV + + T SGDK +++
Sbjct: 294 TPY----GASIFQSKESSSVLSCDISV-DDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 5e-07
Identities = 20/161 (12%), Positives = 40/161 (24%), Gaps = 33/161 (20%)
Query: 34 YVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR 93
+ S++ S+ + G LA G +V + ++K +
Sbjct: 207 VRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK----PDKYQLH 262
Query: 94 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKG 153
H V L + + D + W
Sbjct: 263 LHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPY------------------------- 296
Query: 154 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
+ + SV + + T SGDK +++
Sbjct: 297 --GASIFQSKESSSVLSCDISV-DDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 1e-05
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
Query: 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN-ITWAPNGN 219
H V L + + D + W S + + ++ + +
Sbjct: 261 LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDK 319
Query: 220 TIAVGNKEDLVTFIDVV 236
I G+ + T +V+
Sbjct: 320 YIVTGSGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 1e-05
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 10/111 (9%)
Query: 4 PVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDG 63
P FH + + +P + I + + NT N HG V +V S
Sbjct: 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-------HGEVVCAVTISNPT 63
Query: 64 RRLASGSFDKSVAIFALDKKGDLNK--EVVYRGHTGSVDQLCWHATNPDLL 112
R + +G V ++ + G+ + ++ + L+
Sbjct: 64 RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLI 113
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 4e-05
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 3 CPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQ-AHGSKVHSVAWSC 61
+ H K G F + D+ + + T +Q S V S S
Sbjct: 258 KYQLHLHESCVLSLKFAYCGKWF-VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV 316
Query: 62 DGRRLASGSFDKSVAIF 78
D + + +GS DK ++
Sbjct: 317 DDKYIVTGSGDKKATVY 333
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.8 bits (148), Expect = 1e-11
Identities = 27/189 (14%), Positives = 58/189 (30%), Gaps = 23/189 (12%)
Query: 47 YQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 106
+ + AW+ D ++A + V I+ + + H G V + W
Sbjct: 3 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAP 61
Query: 107 TNPDLLSTASGDKTVRIWDARTQKSQ---------------------IMLASGSFDKSVA 145
+ + + T D+ +W + + + A GS + ++
Sbjct: 62 DS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 120
Query: 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT 205
I +++ D + S N LL+ S D RI+ A ++ +
Sbjct: 121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180
Query: 206 KGENINITW 214
+
Sbjct: 181 PTPWGSKMP 189
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.3 bits (126), Expect = 8e-09
Identities = 32/196 (16%), Positives = 55/196 (28%), Gaps = 23/196 (11%)
Query: 29 CKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK 88
+ + E + VH V +S +G R+A S D +V + DK
Sbjct: 179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK----KM 234
Query: 89 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIML----------ASG 138
V T L++ ++ + ++ +
Sbjct: 235 AVATLASETLPLLAVTFITESSLVAAGHDCFP-VLFTYDSAAGKLSFGGRLDVPKQSSQR 293
Query: 139 SFDKSVAIFALDKKGDLNKEV-----VYRGHTGSVDQLCWHA---TNPDLLSTASGDKTV 190
LDKK + H SV Q+ + T D +
Sbjct: 294 GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 353
Query: 191 RIWDARTQKSQIIATK 206
IWD R+ +S + K
Sbjct: 354 SIWDVRSLESALKDLK 369
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.2 bits (97), Expect = 3e-05
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 164 HTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT----KGENINITWAPN 217
H+ V+ + HA N D ++ + V I++ K + G+ + WAP+
Sbjct: 3 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62
Query: 218 GNTIAVG 224
N I
Sbjct: 63 SNRIVTC 69
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 3e-11
Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 26/163 (15%)
Query: 32 DDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91
D +K +NT +G K R + SGS D ++ ++ D+
Sbjct: 157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW------DIECGAC 210
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDK 151
R G + + + + + + D +++WD A ++
Sbjct: 211 LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT-------- 262
Query: 152 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
H+G V +L + + ++S D T+ IWD
Sbjct: 263 ---------LVEHSGRVFRLQFD---EFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 2e-07
Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 10/128 (7%)
Query: 4 PVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDG 63
V + K L D+ ++ ++ G + D
Sbjct: 170 FVRTLNGHKRGIACLQYRDRLVV-SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 228
Query: 64 RRLASGSFDKSVAIFALDKKGDLNKEV------VYRGHTGSVDQLCWHATNPDLLSTASG 117
+R+ SG++D + ++ L D H+G V +L + + ++S
Sbjct: 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQIVSSSH 285
Query: 118 DKTVRIWD 125
D T+ IWD
Sbjct: 286 DDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 2e-07
Identities = 34/207 (16%), Positives = 75/207 (36%), Gaps = 21/207 (10%)
Query: 44 IKEYQAHGSKVHSV-AWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 102
++ V D +++ SG D ++ I+ + L + + GHTGSV L
Sbjct: 5 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKN---TLECKRILTGHTGSVLCL 61
Query: 103 CWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSF--------------DKSVAIFA 148
+ S+ S + + + I D+S+A++
Sbjct: 62 QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ D+ V GH +V+ + + + +ASGD+T+++W+ T + +
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178
Query: 209 NINITWAPNGNTIAVGNKEDLVTFIDV 235
+ G+ ++ + D+
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDI 205
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 1e-04
Identities = 20/158 (12%), Positives = 50/158 (31%), Gaps = 32/158 (20%)
Query: 103 CWHATNPDLLSTASGDKTVRIWDARTQK-----------------SQIMLASGSFDKSVA 145
+ + +ASGD+T+++W+ T + ++ SGS D ++
Sbjct: 142 NVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 201
Query: 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT 205
++ D+ R G + + + + + + D +++WD
Sbjct: 202 LW------DIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255
Query: 206 KGENINI---------TWAPNGNTIAVGNKEDLVTFID 234
+ + I + +D + D
Sbjct: 256 GTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 3e-11
Identities = 9/93 (9%), Positives = 25/93 (26%)
Query: 42 NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101
++ QA + + L S+D S+ ++ D + + + +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 102 LCWHATNPDLLSTASGDKTVRIWDARTQKSQIM 134
+ + + + D S
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA 94
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.2 bits (118), Expect = 7e-08
Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 17/173 (9%)
Query: 59 WSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD 118
+ RL G + V F L D N + G + + + + +S D
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID 215
Query: 119 KTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 178
V + FD + K+ + T + +P
Sbjct: 216 GRVAVEF--------------FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261
Query: 179 D--LLSTASGDKTVRIWDARTQKSQIIATKGENINIT-WAPNGNTIAVGNKED 228
L TA D + W+ +T+K K ++ A + N + + +D
Sbjct: 262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD 314
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (103), Expect = 5e-06
Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 39/185 (21%)
Query: 29 CKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD--- 85
+ + + I+E + A S D VA+ D +GD
Sbjct: 172 VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231
Query: 86 ------LNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLAS 137
+ T + +P L TA D + W+ +T+K A
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291
Query: 138 GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
+ D V I A + ++L A+ D T + A
Sbjct: 292 FNEDSVVKI----------------------------ACSDNILCLATSDDTFKTNAAID 323
Query: 198 QKSQI 202
Q ++
Sbjct: 324 QTIEL 328
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 9e-05
Identities = 6/65 (9%), Positives = 19/65 (29%)
Query: 134 MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
+L S+D S+ ++ D + + + + + + + +
Sbjct: 25 LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84
Query: 194 DARTQ 198
D
Sbjct: 85 DLIGS 89
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 1e-04
Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 160 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-----QIIATKGENINITW 214
+ + + + + LL S D ++ ++ Q Q + K + +
Sbjct: 6 IEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 215 APNGNTIAV 223
N +
Sbjct: 65 IDNTDLQIY 73
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 4e-11
Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 33/227 (14%)
Query: 24 QFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83
+ + D ++ ++ + G DGRR+ SG++D V ++
Sbjct: 108 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW----- 162
Query: 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK------------- 130
D E G +++ + + + S D ++R+WD T
Sbjct: 163 -DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 221
Query: 131 ----SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG 186
+L SG+ D +V I+ + L H + N + + T+S
Sbjct: 222 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH---QSAVTCLQFNKNFVITSSD 278
Query: 187 DKTVRIWDARTQK-------SQIIATKGENINITWAPNGNTIAVGNK 226
D TV++WD +T + + + G I + AVG++
Sbjct: 279 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR 325
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (130), Expect = 2e-09
Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 30/196 (15%)
Query: 3 CPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD 62
+ + Y L G + +D ++ ++ + G + +
Sbjct: 168 TCLHTLQGHTNRVYSLQFDGIHV-VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 226
Query: 63 GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122
L SG+ D +V I+ + L H + N + + T+S D TV+
Sbjct: 227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH---QSAVTCLQFNKNFVITSSDDGTVK 283
Query: 123 IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 182
+WD +T + L + G G V ++ T + +
Sbjct: 284 LWDLKTGEFIRNLVTLESG---------------------GSGGVVWRIRASNTK-LVCA 321
Query: 183 TASGDKT----VRIWD 194
S + T + + D
Sbjct: 322 VGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 1e-07
Identities = 40/240 (16%), Positives = 71/240 (29%), Gaps = 52/240 (21%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
K + H V + G R+ SGS D ++ +++ GHTG V
Sbjct: 9 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAV---TGKCLRTLVGHTGGVWSSQ 64
Query: 104 WH-------------------------------------ATNPDLLSTASGDKTVRIWDA 126
+ + + S D T+R+WD
Sbjct: 65 MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 124
Query: 127 RTQKSQIMLASGS--------FDKSVAIFALDKK---GDLNKEVVYRGHTGSVDQLCWHA 175
T + +L + V A D D E G +++
Sbjct: 125 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 184
Query: 176 TNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
+ + + S D ++R+WD T T +++ N + GN + V D+
Sbjct: 185 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 244
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 1e-04
Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 13/165 (7%)
Query: 82 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLA----- 136
++G+L V +GH V + + + + S D T+++W A T K L
Sbjct: 2 RRGELKSPKVLKGHDDHV--ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 137 ------SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 190
+ S + K + G + + + + S D T+
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 191 RIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
R+WD T + + +G + G + +V D
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 164
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 54.9 bits (130), Expect = 2e-09
Identities = 18/206 (8%), Positives = 41/206 (19%), Gaps = 40/206 (19%)
Query: 3 CPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYV--KHFNTHNDIKEYQAHGSKVHSVAWS 60
+ + K L S L D V F + +
Sbjct: 177 ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV 236
Query: 61 CDGRRLASGSFDKS-VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASG 117
+G +D + + + D + S+ A
Sbjct: 237 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPE 296
Query: 118 DKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 177
+ +D +T+K ++ L +
Sbjct: 297 KGVLLKYDVKTRKVT------------------------------EVKNNLTDLRL---S 323
Query: 178 PD--LLSTASGDKTVRIWDARTQKSQ 201
D + D + + + +
Sbjct: 324 ADRKTVMVRKDDGKIYTFPLEKPEDE 349
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 37.9 bits (86), Expect = 7e-04
Identities = 13/170 (7%), Positives = 34/170 (20%), Gaps = 21/170 (12%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG----------------DLNKEVVY 92
++ V D + + + D + +++ +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKK 152
++ + + I D + +A G K +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 153 GDLNKEVVYRGHTGSV-----DQLCWHATNPDLLSTASGDKTVRIWDART 197
++ R + D + L S D
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 36.0 bits (81), Expect = 0.003
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 54 VHSVAWS-CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLL 112
+ +S DG +A S + F D G V+ + +
Sbjct: 5 KFAEDFSPLDGDLIAFVSRGQ---AFIQDVSG---TYVLKVPEPLRIRYVRRGGDTKVAF 58
Query: 113 STASGD-KTVRIWDARTQKSQIM 134
+ + + I+D RT K++
Sbjct: 59 IHGTREGDFLGIYDYRTGKAEKF 81
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 3e-09
Identities = 13/131 (9%), Positives = 34/131 (25%), Gaps = 17/131 (12%)
Query: 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALD 150
+ H + + + SGD +++WD + ++ D
Sbjct: 9 AGKAHDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNE--------------NPKD 51
Query: 151 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENI 210
K H + + A L++T S + + + +
Sbjct: 52 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD 111
Query: 211 NITWAPNGNTI 221
+ ++
Sbjct: 112 LLDSDMKKHSF 122
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (124), Expect = 1e-08
Identities = 32/223 (14%), Positives = 67/223 (30%), Gaps = 24/223 (10%)
Query: 33 DYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY 92
++ ++ SV S G +A+G + +V I L L
Sbjct: 166 NWSPTLELQGTVESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQ 224
Query: 93 RGHTGSVDQL--CWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALD 150
+ + + + LL+ A + + + S S
Sbjct: 225 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT-------- 276
Query: 151 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT----- 205
+ H+ V L ++ + L +A D +R WD +T+ + I T
Sbjct: 277 --HSSQASLGEFAHSSWVMSLSFNDSGETLC-SAGWDGKLRFWDVKTK--ERITTLNMHC 331
Query: 206 ---KGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERT 245
+ E + +G+++A D+ +S +
Sbjct: 332 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 374
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 1e-07
Identities = 26/201 (12%), Positives = 48/201 (23%), Gaps = 32/201 (15%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAI---------FALDKKGDLNKEVVYRGHTGS 98
+AH + + SV+ S S D + + DK H
Sbjct: 11 KAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 99 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKE 158
+ + A L++T S + + + + +
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKV----------------IFEKLDL 112
Query: 159 VVYRGHTGSVDQLCWHA----TNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITW 214
+ S L W A L T IW + + + T
Sbjct: 113 LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW-SPTL 171
Query: 215 APNGNTIAVGNKEDLVTFIDV 235
G + T +D+
Sbjct: 172 ELQGTVESPMTPSQFATSVDI 192
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 3e-04
Identities = 22/176 (12%), Positives = 51/176 (28%), Gaps = 28/176 (15%)
Query: 36 KHFNTHNDIKEYQAHGSKVHSVAW-------SCDGRRLASGSFDKSVAIFALDKKGDLNK 88
+ N + + H S +H V + + +A+ SF + + + ++ + K
Sbjct: 45 DNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 104
Query: 89 EVVYRG-------HTGSVDQLCWHA----TNPDLLSTASGDKTVRIWDARTQKSQIMLAS 137
+ + S L W A L T IW + +
Sbjct: 105 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164
Query: 138 GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
++ ++ + + + L++T + TV+I
Sbjct: 165 LNWSPTLELQ--------GTVESPMTPSQFATSVDISERG--LIATGFNNGTVQIS 210
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 4e-04
Identities = 27/203 (13%), Positives = 55/203 (27%), Gaps = 28/203 (13%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
S + + + ++ + + + SV +S G LA
Sbjct: 193 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252
Query: 73 KSVAIFAL-------------DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 119
S L + H+ V L ++ + L +A D
Sbjct: 253 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC-SAGWDG 311
Query: 120 TVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW------ 173
+R WD +T++ L D + L + V + +
Sbjct: 312 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA-----EPGVFDVKFLKKGWR 366
Query: 174 ---HATNPDLLSTASGDKTVRIW 193
A + L D+++R +
Sbjct: 367 SGMGADLNESLCCVCLDRSIRWF 389
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 2e-08
Identities = 23/172 (13%), Positives = 42/172 (24%), Gaps = 24/172 (13%)
Query: 23 SQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDK 82
+ + F + + GS V V +S D K
Sbjct: 177 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 236
Query: 83 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDK 142
G+ K + + +T D T+R+WD T
Sbjct: 237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT-------------- 282
Query: 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
++ Q+ AT + + S D T+ ++
Sbjct: 283 ----------SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 3e-04
Identities = 14/146 (9%), Positives = 36/146 (24%), Gaps = 21/146 (14%)
Query: 52 SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH-TGSVDQLCWH-ATNP 109
+ +++ +A + D + V + GH + V + +
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
L + V +W K + ++N + ++ G +
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSV------------------EVNVKSEFQVLAGPIS 119
Query: 170 QLCWHATNP-DLLSTASGDKTVRIWD 194
+ W + D
Sbjct: 120 DISWDFEGRRLCVVGEGRDNFGVFIS 145
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.8 bits (83), Expect = 0.002
Identities = 33/248 (13%), Positives = 65/248 (26%), Gaps = 29/248 (11%)
Query: 17 KLLPSGSQFHLVCKI---DDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDK 73
+ L SG + V D + N E+Q + ++W +GRRL +
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 74 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI 133
+ + V + ++ V + S
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197
Query: 134 ML---ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA--------------- 175
GSF + V + + + +
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257
Query: 176 ---TNPDLLSTASGDKTVRIWDARTQKS----QIIATKGENINITWAPNGN-TIAVGNKE 227
+ +T D T+R+WD T K + + N + GN I + +
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317
Query: 228 DLVTFIDV 235
+ F ++
Sbjct: 318 GTLNFYEL 325
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.3 bits (118), Expect = 6e-08
Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 3/123 (2%)
Query: 3 CPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD 62
V G ++ D K +D + AH V + WS D
Sbjct: 190 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD 249
Query: 63 GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122
G ++AS S DK++ I+ + T DQ L + S + +
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEK---TIPVGTRIEDQQLGIIWTKQALVSISANGFIN 306
Query: 123 IWD 125
+
Sbjct: 307 FVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.9 bits (104), Expect = 3e-06
Identities = 20/173 (11%), Positives = 39/173 (22%), Gaps = 28/173 (16%)
Query: 24 QFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83
+ + ++G V +D
Sbjct: 163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 222
Query: 84 GDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFD 141
E + + +PD +++AS DKT++IW+ T K +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE--------- 273
Query: 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
T DQ L + S + + +
Sbjct: 274 -----------------KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.4 bits (100), Expect = 1e-05
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 5/82 (6%)
Query: 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLL 112
+ + G ++ + SV + L +Y H+ +
Sbjct: 19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVG---SLTDTEIYTEHSHQTTVAKTSP-SGYYC 73
Query: 113 STASGDKTVRIWDARTQKSQIM 134
++ VRIWD +
Sbjct: 74 ASGDVHGNVRIWDTTQTTHILK 95
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.9 bits (91), Expect = 2e-04
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Query: 20 PSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFA 79
P+G + Y + D + Y H + S G ASG +V
Sbjct: 27 PAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNV-RIW 85
Query: 80 LDKKGDLNKEVVYRGHTGSVDQLCWH 105
+ + +G V + W
Sbjct: 86 DTTQTTHILKTTIPVFSGPVKDISWD 111
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.0 bits (86), Expect = 8e-04
Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 172 CWHATNPDLLSTASGDKTVRIWDARTQKSQ---IIATKGENINITWAPNGNTIAVGNKED 228
+ + +++AS DKT++IW+ T K + + T+ E+ + + +
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303
Query: 229 LVTFID 234
+ F++
Sbjct: 304 FINFVN 309
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.2 bits (115), Expect = 1e-07
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ H + +++ S DG+ L S + + + D ++ V H + +
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSW--DISTGISNRVFPDVHATMITGIK 62
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIM 134
+ L T S D +++ A
Sbjct: 63 TTSKGD--LFTVSWDDHLKVVPAGGSGVDSS 91
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.6 bits (103), Expect = 6e-06
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 160 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINIT 213
V GH ++ L A + L +A + + WD T S + IT
Sbjct: 7 VRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.8 bits (101), Expect = 9e-06
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASG 138
V GH ++ L A + L +A + + WD T S +
Sbjct: 7 VRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDV 53
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.4 bits (87), Expect = 5e-04
Identities = 16/171 (9%), Positives = 40/171 (23%), Gaps = 25/171 (14%)
Query: 24 QFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83
+V + + + + + + I
Sbjct: 151 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN 210
Query: 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKS 143
+ + + L+T S D +V +W+ ++ G+
Sbjct: 211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGA---- 266
Query: 144 VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
SV+ + W N + +A D ++ W+
Sbjct: 267 -------------------HAMSSVNSVIWL--NETTIVSAGQDSNIKFWN 296
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 49.4 bits (116), Expect = 1e-07
Identities = 21/205 (10%), Positives = 51/205 (24%), Gaps = 12/205 (5%)
Query: 34 YVKHFNTHNDIKEYQAHGSK--VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91
V + K + V+ + + DG +G + + L
Sbjct: 125 EVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW 184
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDK 151
R + D L + + ++ AR + + A+ L
Sbjct: 185 NRKGYSAPDVLYFWPHQSP-----RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239
Query: 152 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN 211
K + + D + +D + +K A
Sbjct: 240 ----GKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYY 295
Query: 212 -ITWAPNGNTIAVGNKEDLVTFIDV 235
+ + G+ + +G + + +
Sbjct: 296 CVAFDKKGDKLYLGGTFNDLAVFNP 320
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 35.9 bits (81), Expect = 0.004
Identities = 13/145 (8%), Positives = 39/145 (26%), Gaps = 10/145 (6%)
Query: 1 NVCPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWS 60
+ ++ + + + + +D +T +E+ + S
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT----QEFADLTELYFTGLRS 260
Query: 61 CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 120
G + +A + L + K + + + + D L
Sbjct: 261 PKDPNQIYGVLN-RLAKYDLKQ----RKLIKAANLDHTYYCVAFDKKG-DKLYLGGTFND 314
Query: 121 VRIWDARTQKSQIMLASGSFDKSVA 145
+ +++ T + + D S
Sbjct: 315 LAVFNPDTLEKVKNIKLPGGDMSTT 339
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.6 bits (114), Expect = 3e-07
Identities = 25/213 (11%), Positives = 52/213 (24%), Gaps = 14/213 (6%)
Query: 25 FHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSV-AIFALDKK 83
H + + ++ ++ +AW+ DG +L D V A
Sbjct: 108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV 167
Query: 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKS 143
D + D L + + D ++
Sbjct: 168 EDKPIQSWEAETYAQPDVLAVWNQHESS-GVMATPFYTARKDIDP------ADPTAYRTG 220
Query: 144 VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII 203
+ L+ E+ R A NP + +D S
Sbjct: 221 LLTMDLE-----TGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKR 275
Query: 204 ATKGENIN-ITWAPNGNTIAVGNKEDLVTFIDV 235
+ + + +G+T+ +G + D
Sbjct: 276 VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 35.9 bits (81), Expect = 0.004
Identities = 8/76 (10%), Positives = 20/76 (26%)
Query: 3 CPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD 62
+ + + + ++ + N + +SV S D
Sbjct: 231 MAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTD 290
Query: 63 GRRLASGSFDKSVAIF 78
G + G +A +
Sbjct: 291 GSTVWLGGALGDLAAY 306
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.6 bits (101), Expect = 1e-05
Identities = 31/218 (14%), Positives = 62/218 (28%), Gaps = 15/218 (6%)
Query: 4 PVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDG 63
F T + GS + + + +T E + ++ A+S
Sbjct: 150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL---INHPAYSQKA 206
Query: 64 RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123
RL ++ + L GD T + W ++
Sbjct: 207 GRLVWPTYTGKIHQIDLSS-GDAKFLPAVEALTEAERADGWRPGGWQQVA-YHRALDRIY 264
Query: 124 WDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT-NPDLLS 182
+ + + V + + + +D + P L +
Sbjct: 265 LLVDQRD---EWRHKTASRFVVVLDAKT----GERLAKFEMGHEIDSINVSQDEKPLLYA 317
Query: 183 TASGDKTVRIWDARTQKS-QIIATKGENIN-ITWAPNG 218
++GDKT+ I DA + + + + G IT A G
Sbjct: 318 LSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 6e-04
Identities = 19/146 (13%), Positives = 43/146 (29%), Gaps = 20/146 (13%)
Query: 2 VCPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSC 61
+ H S + L + + +ID + +A + W
Sbjct: 192 EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDL---SSGDAKFLPAVEALTEAERADGWRP 248
Query: 62 DGRRLASGSFDKSVAIFALDKKGDL----------------NKEVVYRGHTGSVDQLCWH 105
G + + +D++ + + + +D +
Sbjct: 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVS 308
Query: 106 AT-NPDLLSTASGDKTVRIWDARTQK 130
P L + ++GDKT+ I DA + +
Sbjct: 309 QDEKPLLYALSTGDKTLYIHDAESGE 334
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.0 bits (100), Expect = 2e-05
Identities = 16/225 (7%), Positives = 52/225 (23%), Gaps = 24/225 (10%)
Query: 3 CPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD 62
+ Y S + A + +
Sbjct: 166 SCFHIHPGAAATHYLGSCPASLAASDL---AAAPAAAGIVGAQCTGAQNCSSQAAQANYP 222
Query: 63 GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122
G + + + G+ + + +++ +
Sbjct: 223 GMLVWAVASSILQGDIPAAGATMKAA---IDGNESGRKADNFRSAGFQMVAKLKNTDGIM 279
Query: 123 IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT-NPDLL 181
I +S + ++ + + D + D
Sbjct: 280 ILTVEHSRS-------CLAAAENTSSVTASV--GQTSGPISNGHDSDAIIAAQDGASDNY 330
Query: 182 STASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNK 226
+ ++G + + I+DA + + ++ + + P ++V N+
Sbjct: 331 ANSAGTEVLDIYDAASDQ--DQSS----VELDKGPES--LSVQNE 367
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (98), Expect = 2e-05
Identities = 26/170 (15%), Positives = 55/170 (32%), Gaps = 31/170 (18%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
+ H + V + + + +G+ DK + ++ K + GH G V L +
Sbjct: 9 RGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYA-- 62
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+ +L + S D+TVR+WD + + ++
Sbjct: 63 HGGILVSGSTDRTVRVWDIKKGCCTHV-------------------------FEGHNSTV 97
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPN 217
N + T S D T+ +W + S + + + +
Sbjct: 98 RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 147
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 4e-04
Identities = 8/103 (7%), Positives = 26/103 (25%), Gaps = 28/103 (27%)
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDK 151
+ H ++ + + ++L + S + I++ R+ K
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV------------------- 316
Query: 152 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
+ + + L++ D +
Sbjct: 317 ------HANILKDADQIWSVNFKGKT--LVAAVEKDGQSFLEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (84), Expect = 0.001
Identities = 35/189 (18%), Positives = 72/189 (38%), Gaps = 18/189 (9%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHND--IKEYQAHGSKVHSVAWSCDGRRLASGS 70
E + +G+ D ++ +++ N + + H V ++ ++ G L SGS
Sbjct: 20 QFEDNYVITGAD-------DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGS 71
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130
D++V ++ D K V ++ N + T S D T+ +W +
Sbjct: 72 TDRTVRVW--DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129
Query: 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 190
S + + + + + V RGH SV + + +++ + S D T+
Sbjct: 130 S---VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV---RTVSGHGNIVVSGSYDNTL 183
Query: 191 RIWDARTQK 199
+WD K
Sbjct: 184 IVWDVAQMK 192
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.3 bits (97), Expect = 3e-05
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 27/94 (28%)
Query: 101 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVV 160
DL++T S D + I+ + I
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK-------------------------A 253
Query: 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
H V+ L W P L ++ D ++ W+
Sbjct: 254 LNAHKDGVNNLLWE--TPSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (84), Expect = 0.001
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 5/41 (12%)
Query: 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 131
GH + L + L + S D + W + +
Sbjct: 8 TISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ 43
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (84), Expect = 0.001
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 5/41 (12%)
Query: 160 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200
GH + L + L + S D + W + +
Sbjct: 8 TISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ 43
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 41.7 bits (97), Expect = 6e-05
Identities = 21/183 (11%), Positives = 46/183 (25%), Gaps = 20/183 (10%)
Query: 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALD-KKGDLNKEV-VYRGHTGSVDQLCWHATN 108
G VH S GR L D V + L K+ E+ + +
Sbjct: 61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED 120
Query: 109 PDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV 168
++ A I D T + + + ++ + + + + H
Sbjct: 121 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA----AILASHYR-- 174
Query: 169 DQLCWHATNPDLLSTASGDKTVRIWDARTQ---KSQIIATKGENINITWAPNGNTIAVGN 225
P+ + + + D K+ I+ + + +
Sbjct: 175 ---------PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA 225
Query: 226 KED 228
Sbjct: 226 NAR 228
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 36.8 bits (83), Expect = 0.002
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 183 TASGDKTVRIWDARTQK-SQIIATKGENINITWAPNGNTIAVGNKED-LVTFIDV 235
S + + D + K + I + +P+G + V N V+ ID
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 36.3 bits (82), Expect = 0.003
Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 3/95 (3%)
Query: 34 YVKHFNTHNDIKEYQ--AHGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEV 90
+V + N + Q +V + S D R L + V + +
Sbjct: 17 HVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA 76
Query: 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125
GS+ + + + V +
Sbjct: 77 AESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR 111
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 264 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.96 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.96 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.96 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.95 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.95 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.95 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.94 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.93 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.93 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.92 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.92 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.92 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.91 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.9 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.89 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.88 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.88 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.85 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.8 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.79 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.66 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.64 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.59 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.59 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.56 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.51 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.4 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.31 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.31 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.3 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.21 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.18 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.07 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.01 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.87 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.83 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.79 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.74 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.67 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.63 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.31 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.18 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.11 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.98 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.9 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.89 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.87 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.85 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.8 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.63 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.61 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.6 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.28 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.07 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.06 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.04 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 96.74 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.37 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 95.2 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.56 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 93.74 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 93.65 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 92.93 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 91.52 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 91.52 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 84.98 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=6.1e-28 Score=204.05 Aligned_cols=217 Identities=20% Similarity=0.331 Sum_probs=167.6
Q ss_pred eEeecCCCeeEEEeecCceEEecc--ccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFN--THNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR 93 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~ 93 (264)
..+.|.+..+ +++. ++.+.+|+ ..+..+.|.+|.+.|.+++|+|+|++|++|+.||+|++|++...... ....+.
T Consensus 23 ~a~~~~g~~l-~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~-~~~~~~ 99 (311)
T d1nr0a1 23 LGNTPAGDKI-QYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-LKTTIP 99 (311)
T ss_dssp CEECTTSSEE-EEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-EEEEEE
T ss_pred EEEcCCCCEE-EEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc-cccccc
Confidence 3555666654 3343 44455554 44567788999999999999999999999999999999998764332 224467
Q ss_pred cccccEEeEEEecCCCCeEEEEeC--CCcEEEEECCCCCc--------------------ceEEEeecCCCcEEEEEecc
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTASG--DKTVRIWDARTQKS--------------------QIMLASGSFDKSVAIFALDK 151 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s~--dg~i~vwd~~~~~~--------------------~~~~~~~~~d~~i~i~~~~~ 151 (264)
.|...|.+++|+|++ .++++++. +..+++||+++++. ...+++|+.|+.|.+|+++.
T Consensus 100 ~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~ 178 (311)
T d1nr0a1 100 VFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 178 (311)
T ss_dssp CSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred cccCccccccccccc-cccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc
Confidence 899999999999965 56666765 56699999876432 12477899999999999864
Q ss_pred CCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE---------eecCceEEEEEcCCCCEEE
Q psy9316 152 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII---------ATKGENINITWAPNGNTIA 222 (264)
Q Consensus 152 ~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~---------~~~~~~~~v~~sp~g~~la 222 (264)
. ........|..+|.++.|+|+ +.++++++.||.+++||.++...... .+.+.+.+++|+|+|++|+
T Consensus 179 ~---~~~~~~~~~~~~i~~v~~~p~-~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~ 254 (311)
T d1nr0a1 179 F---KFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 254 (311)
T ss_dssp B---EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred c---ccccccccccccccccccCcc-ccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEE
Confidence 2 223456789999999999985 57889999999999999988764222 1235688999999999999
Q ss_pred EeeCCCeEEEEEcccCCC
Q psy9316 223 VGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 223 ~gs~d~~i~~~d~~~~~~ 240 (264)
+|+.|+.|++||++++..
T Consensus 255 tgs~Dg~v~iwd~~t~~~ 272 (311)
T d1nr0a1 255 SASADKTIKIWNVATLKV 272 (311)
T ss_dssp EEETTSEEEEEETTTTEE
T ss_pred EEeCCCeEEEEECCCCcE
Confidence 999999999999876543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=5.1e-28 Score=203.16 Aligned_cols=203 Identities=19% Similarity=0.325 Sum_probs=165.1
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEE
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~v 123 (264)
.+++++|.+.|.+++|+|++++|++|+.||+|++||+... .....+..|...|.+++|+|++ .++++++.|+.+++
T Consensus 48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSI 123 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEEECSCSCEEEEEECTTS-SEEEEEETTCCEEE
T ss_pred eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccc---eeEEEEecccccEEeeEeeccc-eeeeeecccceeec
Confidence 4578999999999999999999999999999999998642 2334577899999999999855 78999999999999
Q ss_pred EECCCCCc----------------------------------------------------------------ceEEEeec
Q psy9316 124 WDARTQKS----------------------------------------------------------------QIMLASGS 139 (264)
Q Consensus 124 wd~~~~~~----------------------------------------------------------------~~~~~~~~ 139 (264)
|+...... ...+++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEee
Confidence 98654210 01357888
Q ss_pred CCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe----ecCceEEEEEc
Q psy9316 140 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA----TKGENINITWA 215 (264)
Q Consensus 140 ~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~----~~~~~~~v~~s 215 (264)
.|+.+.+|+++... ....+.+|...|.+++|+|+ +.+|++++.||.|++||++........ ....+.+++|+
T Consensus 204 ~d~~v~i~d~~~~~---~~~~~~~h~~~i~~v~~~p~-~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 279 (340)
T d1tbga_ 204 CDASAKLWDVREGM---CRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp TTTEEEEEETTTTE---EEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred cCceEEEEECCCCc---EEEEEeCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEEC
Confidence 99999999976432 23456789999999999985 578999999999999999987653322 22357889999
Q ss_pred CCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 216 PNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 216 p~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
|++++|++|+.|+.|++||+.++ +...++.||...|++|
T Consensus 280 ~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~H~~~V~~l 318 (340)
T d1tbga_ 280 KSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCL 318 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEE
T ss_pred CCCCEEEEEECCCEEEEEECCCC----cEEEEEcCCCCCEEEE
Confidence 99999999999999999998753 3445788999888876
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=1.7e-26 Score=190.80 Aligned_cols=218 Identities=20% Similarity=0.348 Sum_probs=165.3
Q ss_pred ecCCCCC--ceEeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCe------------------
Q psy9316 8 FHTPKSP--EYKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRR------------------ 65 (264)
Q Consensus 8 ~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~------------------ 65 (264)
|.++..+ ...+.|.+. ++++|+.|+.|++|+. .+.++++.+|.+.|.+++|+|++.+
T Consensus 13 L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (317)
T d1vyhc1 13 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 91 (317)
T ss_dssp EECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred EcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccc
Confidence 4444443 346677764 6778999999999964 4566677777777777777766554
Q ss_pred ------------------------EEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcE
Q psy9316 66 ------------------------LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 121 (264)
Q Consensus 66 ------------------------l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i 121 (264)
+++++.|+.+++|++... .....+.+|...+.+++|++++ .++++++.|+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v 167 (317)
T d1vyhc1 92 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG---YCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTV 167 (317)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred ccccccccccccceeeeccCCCceEEeeccCcceeEeecccc---eeeeEEccCCCcceeeecccCC-CEEEEEeCCCeE
Confidence 555556666666665432 1223466788999999999854 789999999999
Q ss_pred EEEECCCCCcc---------------------------------------eEEEeecCCCcEEEEEeccCCCccceEEEe
Q psy9316 122 RIWDARTQKSQ---------------------------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYR 162 (264)
Q Consensus 122 ~vwd~~~~~~~---------------------------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~ 162 (264)
++||+++.+.. ..+.+++.|+.|.+|+++... ....+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~ 244 (317)
T d1vyhc1 168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM---CLMTLV 244 (317)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE---EEEEEE
T ss_pred EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc---EEEEEe
Confidence 99998764311 146778899999999986532 234567
Q ss_pred ccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce--eEeecCceEEEEEcCCCCEEEEeeCCCeEEEEE
Q psy9316 163 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--IIATKGENINITWAPNGNTIAVGNKEDLVTFID 234 (264)
Q Consensus 163 ~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~--~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d 234 (264)
+|...|.+++|+|+ +.+|++++.||.|++||+++++.. ...+.+.+.+++|+|++++|++|+.|+.|++||
T Consensus 245 ~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 245 GHDNWVRGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CCSSCEEEEEECSS-SSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEECCC-CCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 89999999999985 468889999999999999988753 234567899999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9.1e-27 Score=197.99 Aligned_cols=229 Identities=13% Similarity=0.147 Sum_probs=174.9
Q ss_pred eEeecCCCeeEEEeecCceEEeccccc-----cc--cccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcc
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTHN-----DI--KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK 88 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~--~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~ 88 (264)
..+.|.+. ++++|+ |+.|++|+..+ .+ ....+|.+.|.+++|+|++++|++|+.||.|++|++.... ...
T Consensus 57 v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~-~~~ 133 (337)
T d1gxra_ 57 VTISNPTR-HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-PRI 133 (337)
T ss_dssp EEECSSSS-EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---EE
T ss_pred EEECCCCC-EEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc-ccc
Confidence 36666664 455665 89999997532 11 1345789999999999999999999999999999986432 222
Q ss_pred cEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEe
Q psy9316 89 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFAL 149 (264)
Q Consensus 89 ~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~ 149 (264)
...+..|...+..++|+|++ .++++++.|+.+++||+++++. ...+++++.|+.+.+|++
T Consensus 134 ~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~ 212 (337)
T d1gxra_ 134 KAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212 (337)
T ss_dssp EEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 23466888999999999854 7888999999999999987532 125678889999999998
Q ss_pred ccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce-eEeecCceEEEEEcCCCCEEEEeeCCC
Q psy9316 150 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-IIATKGENINITWAPNGNTIAVGNKED 228 (264)
Q Consensus 150 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~-~~~~~~~~~~v~~sp~g~~la~gs~d~ 228 (264)
+.... .....|...|.+++|+|. +.++++++.||.+++||+++.+.. ...+...+.+++|+|+|++|++|+.|+
T Consensus 213 ~~~~~----~~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg 287 (337)
T d1gxra_ 213 REGRQ----LQQHDFTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp TTTEE----EEEEECSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cccee----ecccccccceEEEEEccc-ccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCC
Confidence 65322 223467889999999985 578889999999999999987753 334566789999999999999999999
Q ss_pred eEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 229 LVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 229 ~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
.|++||+..+.... ..+|...++++
T Consensus 288 ~i~iwd~~~~~~~~-----~~~~~~~v~~~ 312 (337)
T d1gxra_ 288 LLNAWRTPYGASIF-----QSKESSSVLSC 312 (337)
T ss_dssp EEEEEETTTCCEEE-----EEECSSCEEEE
T ss_pred eEEEEECCCCCEEE-----EccCCCCEEEE
Confidence 99999987643321 23455666554
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=7.7e-27 Score=197.20 Aligned_cols=215 Identities=19% Similarity=0.308 Sum_probs=164.0
Q ss_pred eEeecCCCeeEEEeecCceEEecccccc----ccccccCCCCEEEEEECCCCCeEEEEECC--CcEEEEEeccCCCCccc
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTHND----IKEYQAHGSKVHSVAWSCDGRRLASGSFD--KSVAIFALDKKGDLNKE 89 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~h~~~V~~l~~s~~g~~l~s~s~d--g~i~v~~~~~~~~~~~~ 89 (264)
.++.|.+ +++++++.|+.+++|+..+. ...+..|.+.|.+++|+|++++|++++.+ ..+++|+++.... .
T Consensus 64 ~~~sp~g-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~---~ 139 (311)
T d1nr0a1 64 AKTSPSG-YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS---N 139 (311)
T ss_dssp EEECTTS-SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB---C
T ss_pred EEEeCCC-CeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccc---c
Confidence 3677776 46678999999999976432 24577899999999999999999999864 5699999875322 2
Q ss_pred EEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEec
Q psy9316 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFALD 150 (264)
Q Consensus 90 ~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~ 150 (264)
..+.+|...|.+++|+|+++..+++|+.||.|++||+++.+. ...+++++.|+.+.+|+++
T Consensus 140 ~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~ 219 (311)
T d1nr0a1 140 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 219 (311)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccc
Confidence 236789999999999998777788999999999999987431 1257889999999999986
Q ss_pred cCCCccc----eEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee--cC-ceEEEEEcCCCCEEEE
Q psy9316 151 KKGDLNK----EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT--KG-ENINITWAPNGNTIAV 223 (264)
Q Consensus 151 ~~~~~~~----~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~--~~-~~~~v~~sp~g~~la~ 223 (264)
....... .....+|.+.|.+++|+|+ +.+|++|+.||.|+|||+++++...... .. ....+.+.+++++|++
T Consensus 220 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s 298 (311)
T d1nr0a1 220 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 298 (311)
T ss_dssp TCCEEEECBCTTSSSCSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEE
T ss_pred cccccccccccccccccccccccccccCCC-CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEE
Confidence 5432211 0112468899999999985 4789999999999999999987533221 11 1223445556778999
Q ss_pred eeCCCeEEEEEc
Q psy9316 224 GNKEDLVTFIDV 235 (264)
Q Consensus 224 gs~d~~i~~~d~ 235 (264)
++.||.|++||.
T Consensus 299 ~s~dG~i~~wd~ 310 (311)
T d1nr0a1 299 ISANGFINFVNP 310 (311)
T ss_dssp EETTCCEEEEET
T ss_pred EECCCEEEEEeC
Confidence 999999999995
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3e-26 Score=194.73 Aligned_cols=211 Identities=19% Similarity=0.235 Sum_probs=173.1
Q ss_pred ceEeecCCCeeEEEeecCceEEecccc----ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccE
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTH----NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV 90 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~ 90 (264)
...+.|.+. .+++++.|+.+++|+.. .....+..|...|.++.|+|++.++++++.|+.|++|++... ....
T Consensus 102 ~v~~s~dg~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~---~~~~ 177 (337)
T d1gxra_ 102 SCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---TLVR 177 (337)
T ss_dssp EEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEE
T ss_pred EEEEcCCCC-EEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccc
Confidence 346777775 56788999999999753 334567789999999999999999999999999999998642 2234
Q ss_pred EEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc------------------ceEEEeecCCCcEEEEEeccC
Q psy9316 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS------------------QIMLASGSFDKSVAIFALDKK 152 (264)
Q Consensus 91 ~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~------------------~~~~~~~~~d~~i~i~~~~~~ 152 (264)
....|...|.+++|++.+ ..+++++.|+.+++||+++++. ...+++++.|+.+.+|+++..
T Consensus 178 ~~~~~~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~ 256 (337)
T d1gxra_ 178 QFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred cccccccccccccccccc-cccccccccccccccccccceeecccccccceEEEEEcccccccceecccccccccccccc
Confidence 466899999999999855 6888999999999999987542 125788899999999998653
Q ss_pred CCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-EeecCceEEEEEcCCCCEEEEeeCCCeEE
Q psy9316 153 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATKGENINITWAPNGNTIAVGNKEDLVT 231 (264)
Q Consensus 153 ~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~~~~~~v~~sp~g~~la~gs~d~~i~ 231 (264)
. ......|...|..++|+|+ +.+|++++.||.|++||+.+++... ..+...+.+++|+|+|++|++|+.|+.|+
T Consensus 257 ~----~~~~~~~~~~i~~v~~s~~-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~ 331 (337)
T d1gxra_ 257 D----KYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKAT 331 (337)
T ss_dssp C----EEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred c----cccccccccccceEEECCC-CCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 3 2345678899999999985 4688999999999999999887533 34566789999999999999999999999
Q ss_pred EEEc
Q psy9316 232 FIDV 235 (264)
Q Consensus 232 ~~d~ 235 (264)
+||+
T Consensus 332 vWdl 335 (337)
T d1gxra_ 332 VYEV 335 (337)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.1e-26 Score=195.90 Aligned_cols=232 Identities=23% Similarity=0.380 Sum_probs=171.5
Q ss_pred eEeecCCCeeEEEeecCceEEeccccc--cccc------------------cccCCCCEEEEEECCCCCeEEEEECCCcE
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTHN--DIKE------------------YQAHGSKVHSVAWSCDGRRLASGSFDKSV 75 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~------------------~~~h~~~V~~l~~s~~g~~l~s~s~dg~i 75 (264)
..+.|.|. ++++++ |+.|++|+..+ .+.+ ...|...|.+++|+|++++|++|+.||.|
T Consensus 68 l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v 145 (388)
T d1erja_ 68 VKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLI 145 (388)
T ss_dssp EEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCE
T ss_pred EEECCCCC-EEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccc
Confidence 35666664 555554 99999997532 2222 23567789999999999999999999999
Q ss_pred EEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEE
Q psy9316 76 AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLA 136 (264)
Q Consensus 76 ~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~ 136 (264)
++|+.... .....+.+|...|.++.|++.+ ..+++++.++.+++||.++... ...++
T Consensus 146 ~i~~~~~~---~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 221 (388)
T d1erja_ 146 RIWDIENR---KIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 221 (388)
T ss_dssp EEEETTTT---EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEE
T ss_pred cccccccc---cccccccccccccccccccccc-ccccccccceeeeeeeccccccccccccccccccccccCCCCCeEE
Confidence 99997542 2334567899999999999854 6788999999999999986431 23678
Q ss_pred eecCCCcEEEEEeccCCCccc----eEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee----------
Q psy9316 137 SGSFDKSVAIFALDKKGDLNK----EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI---------- 202 (264)
Q Consensus 137 ~~~~d~~i~i~~~~~~~~~~~----~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~---------- 202 (264)
+++.|+.|.+|+.+....... .....+|...|.++.|+|+ +.+|++++.||.|++||+++.....
T Consensus 222 ~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 300 (388)
T d1erja_ 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300 (388)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEEC---------------CE
T ss_pred EEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCC-CCEEEEEECCCcEEEEeccCCccccccccccccce
Confidence 899999999999865432221 1123568899999999985 5788999999999999998654211
Q ss_pred ----EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 203 ----IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 203 ----~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
..+...+.+++|+|+|++|++|+.|+.|++||++++. ...+++||...+.+|
T Consensus 301 ~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~----~~~~l~~H~~~V~~~ 356 (388)
T d1erja_ 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN----PLLMLQGHRNSVISV 356 (388)
T ss_dssp EEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEE
T ss_pred eeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc----EEEEEeCCCCCEEEE
Confidence 1123457889999999999999999999999987543 345678888877765
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=2.1e-26 Score=198.43 Aligned_cols=213 Identities=16% Similarity=0.279 Sum_probs=162.1
Q ss_pred eEeecCCCeeEEEeecCceEEecccc----ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEE
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTH----NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~ 91 (264)
..+.|.+. +.++++.|+.|++|+.. ..+..+.+|.++|.+++|+|++++|++|+.|++|++|++... .......
T Consensus 13 ~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~-~~~~~~~ 90 (371)
T d1k8kc_ 13 HAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-TWKPTLV 90 (371)
T ss_dssp EEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT-EEEEEEE
T ss_pred EEECCCCC-EEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc-ccccccc
Confidence 35667665 44577889999999763 356778899999999999999999999999999999998742 2333344
Q ss_pred EecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeE
Q psy9316 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 171 (264)
Q Consensus 92 ~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i 171 (264)
+..|...|.+++|+|++ +.+++++.|+++++|+++........ ......|...|.++
T Consensus 91 ~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~----------------------~~~~~~~~~~v~~v 147 (371)
T d1k8kc_ 91 ILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVC----------------------KHIKKPIRSTVLSL 147 (371)
T ss_dssp CCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEE----------------------EEECTTCCSCEEEE
T ss_pred ccccccccccccccccc-ccceeecccCcceeeeeecccccccc----------------------cccccccccccccc
Confidence 56789999999999955 78899999999999998754322111 11235678899999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCcce-----------------e---EeecCceEEEEEcCCCCEEEEeeCCCeEE
Q psy9316 172 CWHATNPDLLSTASGDKTVRIWDARTQKSQ-----------------I---IATKGENINITWAPNGNTIAVGNKEDLVT 231 (264)
Q Consensus 172 ~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~-----------------~---~~~~~~~~~v~~sp~g~~la~gs~d~~i~ 231 (264)
.|+|+ +.+|++++.||++++||+...... . ..+...+.+++|+|+|++|++++.|+.|+
T Consensus 148 ~~~p~-~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~ 226 (371)
T d1k8kc_ 148 DWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVC 226 (371)
T ss_dssp EECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEE
T ss_pred ccccc-ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcce
Confidence 99985 578899999999999998754310 0 11234578899999999999999999999
Q ss_pred EEEcccCCCCCCCcccCcccceeeeee
Q psy9316 232 FIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 232 ~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
+||+..+.. ..++.+|...+.+|
T Consensus 227 iwd~~~~~~----~~~~~~~~~~v~s~ 249 (371)
T d1k8kc_ 227 LADADKKMA----VATLASETLPLLAV 249 (371)
T ss_dssp EEEGGGTTE----EEEEECSSCCEEEE
T ss_pred EEeeecccc----eeeeecccccceee
Confidence 999876433 34556666666554
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=5.3e-26 Score=187.86 Aligned_cols=204 Identities=23% Similarity=0.322 Sum_probs=155.0
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEE-----------------------
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD----------------------- 100 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~----------------------- 100 (264)
..++++|.+.|++|+|+|++++|++|+.||+|++||+.... . ...+++|...|.
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~-~--~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 86 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-F--ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 86 (317)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-C--CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-E--EEEEeCCCCcEEEEeeecccccccccccccccccc
Confidence 35688999999999999999999999999999999986422 1 122344444444
Q ss_pred -------------------eEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------ceEEEeecCCC
Q psy9316 101 -------------------QLCWHATNPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDK 142 (264)
Q Consensus 101 -------------------~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------~~~~~~~~~d~ 142 (264)
++.|++. ...+++++.|+.+++||+++++. ...+++++.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 165 (317)
T d1vyhc1 87 DFQGFECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 165 (317)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cccccccccccccccccceeeeccCC-CceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCC
Confidence 4444443 35677888899999999876532 12577888999
Q ss_pred cEEEEEeccCCCccceEEEeccccceeeEEEcCCC-------------------CCEEEEEeCCCcEEEEeCCCCccee-
Q psy9316 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN-------------------PDLLSTASGDKTVRIWDARTQKSQI- 202 (264)
Q Consensus 143 ~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~-------------------~~~i~s~~~dg~i~iwD~~t~~~~~- 202 (264)
.+.+|+.+... ....+..|...+..+.|+|.. +.++++++.||.|++||+++++...
T Consensus 166 ~v~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 242 (317)
T d1vyhc1 166 TVRVWVVATKE---CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242 (317)
T ss_dssp CEEEEETTTCC---EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred eEEEEeeccce---eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE
Confidence 99999876533 223456778888888887653 2368899999999999999987532
Q ss_pred -EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 203 -IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 203 -~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
..+...+.+++|+|++++|++|+.|+.|++||+.++. ...++.+|...+.+|
T Consensus 243 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~h~~~V~~~ 295 (317)
T d1vyhc1 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR----CMKTLNAHEHFVTSL 295 (317)
T ss_dssp EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC----CCEEEECCSSCEEEE
T ss_pred EeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc----EEEEEcCCCCCEEEE
Confidence 3345678899999999999999999999999987643 345678999888877
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=1.4e-25 Score=188.02 Aligned_cols=216 Identities=18% Similarity=0.301 Sum_probs=164.0
Q ss_pred ceEeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcc-cE-
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK-EV- 90 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~-~~- 90 (264)
...+.|.+. ++++|+.|+.|++|+. .+.+..+..|.+.|.+++|+|+++++++|+.|+.+.+|+......... ..
T Consensus 60 ~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~ 138 (340)
T d1tbga_ 60 AMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138 (340)
T ss_dssp EEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEE
T ss_pred EEEECCCCC-EEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccccccccccccee
Confidence 336667664 6788999999999975 456778889999999999999999999999999999998654221100 00
Q ss_pred ----------------------------------------EEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 91 ----------------------------------------VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 91 ----------------------------------------~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
....+...+....+.+ ...++++++.|+.+++||+++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~ 217 (340)
T d1tbga_ 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGM 217 (340)
T ss_dssp ECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccceeEeeecccc-ccceeEEeecCceEEEEECCCCc
Confidence 0112334455555555 44688899999999999998653
Q ss_pred c-------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEE
Q psy9316 131 S-------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 191 (264)
Q Consensus 131 ~-------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~ 191 (264)
. ...+++++.|+.+.+|+++...... ......+..+|..++|+|+ +.+|++|+.||.|+
T Consensus 218 ~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~-~~~l~~g~~dg~i~ 295 (340)
T d1tbga_ 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-TYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCN 295 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCTTCCSCEEEEEECSS-SCEEEEEETTSCEE
T ss_pred EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccc-ccccccccCceEEEEECCC-CCEEEEEECCCEEE
Confidence 2 1257889999999999986432211 1122356678999999985 57889999999999
Q ss_pred EEeCCCCccee--EeecCceEEEEEcCCCCEEEEeeCCCeEEEEE
Q psy9316 192 IWDARTQKSQI--IATKGENINITWAPNGNTIAVGNKEDLVTFID 234 (264)
Q Consensus 192 iwD~~t~~~~~--~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d 234 (264)
+||+.+++... ..+.+.+.+++|+|++++|++|+.|+.|++||
T Consensus 296 iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 99999887532 23567789999999999999999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=5.4e-26 Score=189.04 Aligned_cols=192 Identities=16% Similarity=0.219 Sum_probs=148.8
Q ss_pred ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcE
Q psy9316 42 NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 121 (264)
Q Consensus 42 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i 121 (264)
+..+.++||.+.|++|+|+|++++|++|+.||+|++||+... .... .....|...|.+++|+|++ + +++++.|+.+
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~-~~~~-~~~~~h~~~v~~v~~~~~g-~-~~~~~~d~~v 78 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG-ISNR-VFPDVHATMITGIKTTSKG-D-LFTVSWDDHL 78 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEE-CSSCSCSSCEEEEEECTTS-C-EEEEETTTEE
T ss_pred ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEE-EEcCCCCCcEEEEEeeccc-e-eecccceeeE
Confidence 446778999999999999999999999999999999998652 2211 1134789999999999865 4 5577889999
Q ss_pred EEEECCCCCc-----------------------------------------------------------ceEEEeecCCC
Q psy9316 122 RIWDARTQKS-----------------------------------------------------------QIMLASGSFDK 142 (264)
Q Consensus 122 ~vwd~~~~~~-----------------------------------------------------------~~~~~~~~~d~ 142 (264)
++|+...... ...+++|+.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 158 (299)
T d1nr0a2 79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDS 158 (299)
T ss_dssp EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred EEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999754210 01356788889
Q ss_pred cEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-----EeecCceEEEEEcCC
Q psy9316 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-----IATKGENINITWAPN 217 (264)
Q Consensus 143 ~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-----~~~~~~~~~v~~sp~ 217 (264)
.+.+|+++... ........|...|.+++|+|+ +.++++++.||.|++||+.+..... ..+...+.+++|+|+
T Consensus 159 ~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 235 (299)
T d1nr0a2 159 KVHVYKLSGAS--VSEVKTIVHPAEITSVAFSNN-GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD 235 (299)
T ss_dssp EEEEEEEETTE--EEEEEEEECSSCEEEEEECTT-SSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred ccccccccccc--ccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999886432 112234578899999999985 5788999999999999998765321 223456889999999
Q ss_pred CCEEEEeeCCCeEEEEEcccCCC
Q psy9316 218 GNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 218 g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
+++|++|+.|+.|++||++.+..
T Consensus 236 ~~~l~sgs~dg~i~iwd~~~~~~ 258 (299)
T d1nr0a2 236 NVRLATGSLDNSVIVWNMNKPSD 258 (299)
T ss_dssp SSEEEEEETTSCEEEEETTCTTS
T ss_pred ccceEEEcCCCEEEEEECCCCCc
Confidence 99999999999999999886443
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=9.5e-26 Score=187.97 Aligned_cols=195 Identities=12% Similarity=0.035 Sum_probs=140.5
Q ss_pred ccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEE
Q psy9316 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123 (264)
Q Consensus 44 ~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~v 123 (264)
++..++|++.|++|+|+|++++|++|+.||+|++||++............+|.+.|.+++|+|.++.++++|+.||.|++
T Consensus 4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~ 83 (342)
T d1yfqa_ 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence 45678999999999999999999999999999999997644322222334699999999999977778999999999999
Q ss_pred EECCCCCcc--------------------eE------------------------------------------------E
Q psy9316 124 WDARTQKSQ--------------------IM------------------------------------------------L 135 (264)
Q Consensus 124 wd~~~~~~~--------------------~~------------------------------------------------~ 135 (264)
|++...... .. +
T Consensus 84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (342)
T d1yfqa_ 84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163 (342)
T ss_dssp ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred eecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence 998754311 12 2
Q ss_pred EeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce--------eE----
Q psy9316 136 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--------II---- 203 (264)
Q Consensus 136 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~--------~~---- 203 (264)
++++.|+.+.+|+++.............+...+....+.+.+...+++++.||.+.+|+....... ..
T Consensus 164 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T d1yfqa_ 164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp EEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred eeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeee
Confidence 344445555555544333222222222333445566677767778999999999999988654310 00
Q ss_pred -----eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 204 -----ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 204 -----~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
.+...+.+++|+|++++||+|+.||.|++||+...
T Consensus 244 ~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~ 283 (342)
T d1yfqa_ 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence 01123578999999999999999999999998753
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=3.9e-25 Score=183.73 Aligned_cols=218 Identities=13% Similarity=0.221 Sum_probs=157.4
Q ss_pred ceEeecCCCeeEEEeecCceEEecccc--cccccc-ccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCccc--
Q psy9316 15 EYKLLPSGSQFHLVCKIDDYVKHFNTH--NDIKEY-QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE-- 89 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~-~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~-- 89 (264)
-..+.|.+. ++++|+.|+.++.|+.. +.++.+ .+|.+.|.+++|+|++++ ++++.|+.+++|+..........
T Consensus 17 ~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~ 94 (299)
T d1nr0a2 17 ALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSSKAV 94 (299)
T ss_dssp EEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSCTTSCC
T ss_pred EEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCccccccccc
Confidence 346677664 56789999999999753 455566 478999999999999875 56678999999986532110000
Q ss_pred ----------------------------EEE-------ecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc---
Q psy9316 90 ----------------------------VVY-------RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--- 131 (264)
Q Consensus 90 ----------------------------~~~-------~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--- 131 (264)
.++ ......+.+++|+|+ +.++++++.||.+++||+++++.
T Consensus 95 ~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~~~d~~~~~~~~~ 173 (299)
T d1nr0a2 95 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND-KQFVAVGGQDSKVHVYKLSGASVSEV 173 (299)
T ss_dssp EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT-SCEEEEEETTSEEEEEEEETTEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence 000 012234667788874 47888999999999999876431
Q ss_pred -----------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEe
Q psy9316 132 -----------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194 (264)
Q Consensus 132 -----------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD 194 (264)
...+++++.|+.+.+|++...........+..|..+|.+++|+|+ +.+|++|+.||.|++||
T Consensus 174 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~sgs~dg~i~iwd 252 (299)
T d1nr0a2 174 KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD-NVRLATGSLDNSVIVWN 252 (299)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT-SSEEEEEETTSCEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccceEEEcCCCEEEEEE
Confidence 124778899999999998765444333345678899999999985 57899999999999999
Q ss_pred CCCCccee-Ee---ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 195 ARTQKSQI-IA---TKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 195 ~~t~~~~~-~~---~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
+++..... .. +........+++++++|++|+.|+.|++||+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 253 MNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred CCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence 99865422 21 12233444455678899999999999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=4.8e-25 Score=185.09 Aligned_cols=239 Identities=18% Similarity=0.224 Sum_probs=159.7
Q ss_pred EeecCCCCCce-EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEecc
Q psy9316 6 IQFHTPKSPEY-KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDK 82 (264)
Q Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~ 82 (264)
..++++...-. -+-+.+ .++++|+.|+.|++|+. .+.++++.+|.+.|.+++|+|+ .+|++|+.|++|++|++..
T Consensus 6 ~tL~GH~~~vitc~~~~~-~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~ 83 (355)
T d1nexb2 6 TTLRGHMTSVITCLQFED-NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKK 83 (355)
T ss_dssp EEEECCSSSCEEEEEEET-TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTT
T ss_pred EEECCcCCCcEEEEEECC-CEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccc
Confidence 34555544432 355555 57788999999999975 5678889999999999999985 5899999999999999764
Q ss_pred CCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-------------------------------
Q psy9316 83 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS------------------------------- 131 (264)
Q Consensus 83 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~------------------------------- 131 (264)
... ........+........+.+ +...+++++.|+.|++||+++...
T Consensus 84 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
T d1nexb2 84 GCC-THVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161 (355)
T ss_dssp TEE-EEEECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred ccc-cccccccccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence 221 11111112222233344444 335667777777777777654210
Q ss_pred ---------ce------------------------------------------EEEeecCCCcEEEEEeccCCCccceEE
Q psy9316 132 ---------QI------------------------------------------MLASGSFDKSVAIFALDKKGDLNKEVV 160 (264)
Q Consensus 132 ---------~~------------------------------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~ 160 (264)
.. .+++++.|+.|++|+.+... ....
T Consensus 162 ~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~ 238 (355)
T d1nexb2 162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE---LMYT 238 (355)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC---EEEE
T ss_pred ccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccc---cccc
Confidence 00 23444455555555543321 1234
Q ss_pred EeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecCceEEE-EEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINI-TWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 161 ~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v-~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
+.+|...|.++.+++ .+|++++.||.|++||+++.......+...+..+ .++|+++++++|+ |+.|++||++++.
T Consensus 239 ~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~ 314 (355)
T d1nexb2 239 LQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 314 (355)
T ss_dssp ECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred ccccccccccccccc---ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCC
Confidence 568889999999864 5899999999999999998876656665555554 5678888877776 8999999998765
Q ss_pred CCCCCcccCcccceeeeee
Q psy9316 240 PPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 240 ~~~~~~~~~~~h~~~~~~~ 258 (264)
..+ ....+|...+.+|
T Consensus 315 ~~~---~~~~~~~~~V~~v 330 (355)
T d1nexb2 315 LVH---ANILKDADQIWSV 330 (355)
T ss_dssp BCC---SCTTTTCSEEEEE
T ss_pred EEE---EEecCCCCCEEEE
Confidence 433 2356777776654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3.1e-24 Score=184.01 Aligned_cols=215 Identities=22% Similarity=0.348 Sum_probs=165.4
Q ss_pred EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG 94 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~ 94 (264)
.+.|.+ .++++|+.|+.+++|+. .+.+..+.+|.+.|.++.+++++..+++++.++.+++|+..... . .....
T Consensus 128 ~~s~~~-~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~-~~~~~ 202 (388)
T d1erja_ 128 CFSPDG-KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---C-SLTLS 202 (388)
T ss_dssp EECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---E-EEEEE
T ss_pred EECCCC-Ccceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccc---c-ccccc
Confidence 455555 45678999999999865 45567788999999999999999999999999999999976421 1 12233
Q ss_pred ccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc--------------------------ceEEEeecCCCcEEEEE
Q psy9316 95 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS--------------------------QIMLASGSFDKSVAIFA 148 (264)
Q Consensus 95 h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------------------~~~~~~~~~d~~i~i~~ 148 (264)
+......+.+.+.++.++++++.||.|++||++++.. ...+++++.|+.+.+|+
T Consensus 203 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd 282 (388)
T d1erja_ 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282 (388)
T ss_dssp CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEe
Confidence 4555667778887788999999999999999876431 12578899999999999
Q ss_pred eccCCCc---------cceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcce--eEeecCceEEEE----
Q psy9316 149 LDKKGDL---------NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--IIATKGENINIT---- 213 (264)
Q Consensus 149 ~~~~~~~---------~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~--~~~~~~~~~~v~---- 213 (264)
++..... ........|...|.+++|+|+ +.+|++|+.||.|++||+++++.. ...+.+.+.+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~ 361 (388)
T d1erja_ 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 361 (388)
T ss_dssp C---------------CEEEEEECCSSCEEEEEECGG-GCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred ccCCccccccccccccceeeecccccceEEEEEECCC-CCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecC
Confidence 8643221 112345678889999999985 578999999999999999998753 234566677775
Q ss_pred --EcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 214 --WAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 214 --~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
|+|++++|++|+.|+.|++||+++
T Consensus 362 ~~~spd~~~l~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 362 SSLGPEYNVFATGSGDCKARIWKYKK 387 (388)
T ss_dssp CTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred cccCCCCCEEEEEeCCCEEEEEeeee
Confidence 568999999999999999999864
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.8e-24 Score=183.14 Aligned_cols=223 Identities=14% Similarity=0.182 Sum_probs=156.9
Q ss_pred eEeecCCCeeEEEeecCceEEecccc----ccccccccCC-CCEEEEEECC--CCCeEEEEECCCcEEEEEeccCCCCcc
Q psy9316 16 YKLLPSGSQFHLVCKIDDYVKHFNTH----NDIKEYQAHG-SKVHSVAWSC--DGRRLASGSFDKSVAIFALDKKGDLNK 88 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~h~-~~V~~l~~s~--~g~~l~s~s~dg~i~v~~~~~~~~~~~ 88 (264)
..+.|.+..+...++-..+++.++.. ..+..+.+|. ..|++++|+| ++++|++|+.||+|++|++........
T Consensus 23 l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~ 102 (325)
T d1pgua1 23 LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS 102 (325)
T ss_dssp CEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE
T ss_pred EEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceee
Confidence 45677776654333333456666542 2345677774 6799999998 678999999999999999865332211
Q ss_pred c-----EEEecccccEEeEEEecCCCCeEEEEe--CCCcEEEEECCCCCc--------------------ceEEEeecCC
Q psy9316 89 E-----VVYRGHTGSVDQLCWHATNPDLLSTAS--GDKTVRIWDARTQKS--------------------QIMLASGSFD 141 (264)
Q Consensus 89 ~-----~~~~~h~~~v~~i~~~~~~~~~l~s~s--~dg~i~vwd~~~~~~--------------------~~~~~~~~~d 141 (264)
. ..+..|.+.|.+++|++++ .++++++ .++.+++|+.++++. ...+++++.|
T Consensus 103 ~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d 181 (325)
T d1pgua1 103 VEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181 (325)
T ss_dssp EEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETT
T ss_pred eecccccccccccCcEEEEEECCCC-CccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecc
Confidence 1 1245688899999999866 4554444 478899999876432 1246778899
Q ss_pred CcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--ecCceEEEEEc---C
Q psy9316 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--TKGENINITWA---P 216 (264)
Q Consensus 142 ~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~~~~~~~v~~s---p 216 (264)
+.+.+|+...............|...|.+++|+|+.+.++++++.||.|++||+++++..... +...+..+.|+ |
T Consensus 182 ~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~ 261 (325)
T d1pgua1 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 261 (325)
T ss_dssp TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES
T ss_pred cccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeecc
Confidence 999999875322111112234677889999999987889999999999999999988753322 23333333343 6
Q ss_pred CCCEEEEeeCCCeEEEEEcccCC
Q psy9316 217 NGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 217 ~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
+|++|++|+.|+.|++||++.+.
T Consensus 262 dg~~l~s~s~D~~i~iwd~~~~~ 284 (325)
T d1pgua1 262 DSQKFATVGADATIRVWDVTTSK 284 (325)
T ss_dssp SSSEEEEEETTSEEEEEETTTTE
T ss_pred CCCEEEEEeCCCeEEEEECCCCC
Confidence 89999999999999999987643
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.7e-23 Score=174.67 Aligned_cols=212 Identities=22% Similarity=0.273 Sum_probs=152.1
Q ss_pred EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCC--------
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDL-------- 86 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~-------- 86 (264)
-+.+.|. ++++|+.|+.|++|+. .+.++++.+|.+.|.+++|+|+ +|++|+.|+.+++|+.......
T Consensus 22 ~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~ 98 (342)
T d2ovrb2 22 CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTS 98 (342)
T ss_dssp EEEEETT-EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred EEEECCC-EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccce
Confidence 3556664 6778999999999975 5677889999999999999864 9999999999999985421000
Q ss_pred -----------------------------c----------------------------------------ccEEEecccc
Q psy9316 87 -----------------------------N----------------------------------------KEVVYRGHTG 97 (264)
Q Consensus 87 -----------------------------~----------------------------------------~~~~~~~h~~ 97 (264)
. ....+.+|..
T Consensus 99 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 178 (342)
T d2ovrb2 99 TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 178 (342)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS
T ss_pred eEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccc
Confidence 0 0000122333
Q ss_pred cEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc-----------------eEEEeecCCCcEEEEEeccCCCccceEE
Q psy9316 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ-----------------IMLASGSFDKSVAIFALDKKGDLNKEVV 160 (264)
Q Consensus 98 ~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~ 160 (264)
.+..+.+ ++..+++++.||.|++||++..+.. ..+++++.|+.|++|+............
T Consensus 179 ~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 255 (342)
T d2ovrb2 179 RVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 255 (342)
T ss_dssp CEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred ccccccC---CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccc
Confidence 3333333 3468889999999999999875421 2578899999999999765332211111
Q ss_pred EeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe-------ecCceEEEEEcCCCCEEEEeeCCCe----
Q psy9316 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA-------TKGENINITWAPNGNTIAVGNKEDL---- 229 (264)
Q Consensus 161 ~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~-------~~~~~~~v~~sp~g~~la~gs~d~~---- 229 (264)
...|...+.++.+++ .++++++.||.|++||+++++..... +...+.+++|+|++.+||+|+.||+
T Consensus 256 ~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~ 332 (342)
T d2ovrb2 256 PNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 332 (342)
T ss_dssp TTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCE
T ss_pred cceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeE
Confidence 234566777777754 58999999999999999998753221 1235789999999999999999985
Q ss_pred EEEEEccc
Q psy9316 230 VTFIDVVK 237 (264)
Q Consensus 230 i~~~d~~~ 237 (264)
+++||...
T Consensus 333 l~~~Df~~ 340 (342)
T d2ovrb2 333 LLVLDFDV 340 (342)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999753
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=4.1e-23 Score=168.57 Aligned_cols=198 Identities=23% Similarity=0.330 Sum_probs=126.2
Q ss_pred cccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEEC
Q psy9316 47 YQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 126 (264)
Q Consensus 47 ~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~ 126 (264)
+..|...|+|++| |+++|++|+.||+|++||+.. + .....+++|.+.|.+++|+ +++|++|+.||.+++|++
T Consensus 11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~-~--~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~ 82 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT-L--ECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDV 82 (293)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS-C--CEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEES
T ss_pred cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCC-C--cEEEEEecCCCCEeeeecc---cceeeccccccccccccc
Confidence 4455566666543 566677777777777776643 1 1223455666666666652 346666666777777666
Q ss_pred CCCCcc------------------------------------------------------------eEEEeecCCCcEEE
Q psy9316 127 RTQKSQ------------------------------------------------------------IMLASGSFDKSVAI 146 (264)
Q Consensus 127 ~~~~~~------------------------------------------------------------~~~~~~~~d~~i~i 146 (264)
+.+... ..+.+++.|+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~ 162 (293)
T d1p22a2 83 NTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV 162 (293)
T ss_dssp SSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred ccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceee
Confidence 543210 02345566777777
Q ss_pred EEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeC
Q psy9316 147 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNK 226 (264)
Q Consensus 147 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~ 226 (264)
|+.+... ....+.+|...+..+.++ +..+++++.||.|++||+++................+++++.+|++|+.
T Consensus 163 ~d~~~~~---~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~ 236 (293)
T d1p22a2 163 WNTSTCE---FVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAY 236 (293)
T ss_dssp EETTTCC---EEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEET
T ss_pred ecCCCCc---EEEEEcccccccccccCC---CCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcC
Confidence 7765322 123455677777777765 3588999999999999999887543332222222357788999999999
Q ss_pred CCeEEEEEcccCCCCC-----CCcccCcccceeeeee
Q psy9316 227 EDLVTFIDVVKSLPPR-----ERTLTSRGHLMETRSL 258 (264)
Q Consensus 227 d~~i~~~d~~~~~~~~-----~~~~~~~~h~~~~~~~ 258 (264)
|+.|++||+....... +...++.||...+.+|
T Consensus 237 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v 273 (293)
T d1p22a2 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 273 (293)
T ss_dssp TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEE
Confidence 9999999987644332 2233567898888776
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=4.6e-23 Score=178.63 Aligned_cols=229 Identities=18% Similarity=0.254 Sum_probs=157.0
Q ss_pred CeeEEEeecCceEEecccccc--------ccccccCCCCEEEEE------ECC-CCCeEEEEECCCcEEEEEeccCCCCc
Q psy9316 23 SQFHLVCKIDDYVKHFNTHND--------IKEYQAHGSKVHSVA------WSC-DGRRLASGSFDKSVAIFALDKKGDLN 87 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~~~~--------~~~~~~h~~~V~~l~------~s~-~g~~l~s~s~dg~i~v~~~~~~~~~~ 87 (264)
+.+.++++.|+.+++|+.... ......|...+..+. .+. ++..+++++.||.|++|++.......
T Consensus 24 ~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~ 103 (393)
T d1sq9a_ 24 NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK 103 (393)
T ss_dssp SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC
T ss_pred CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCcee
Confidence 356789999999999974321 112224444433322 222 34578899999999999986543222
Q ss_pred ccEE-------EecccccEEeEEEecCC----CCeEEEEeCCCcEEEEECCCCCc-------------------------
Q psy9316 88 KEVV-------YRGHTGSVDQLCWHATN----PDLLSTASGDKTVRIWDARTQKS------------------------- 131 (264)
Q Consensus 88 ~~~~-------~~~h~~~v~~i~~~~~~----~~~l~s~s~dg~i~vwd~~~~~~------------------------- 131 (264)
.... ...+...+..++|.+.. .+++++++.||.+++||+.....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (393)
T d1sq9a_ 104 KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 183 (393)
T ss_dssp CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSS
T ss_pred eeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCC
Confidence 1111 11245567777887643 25788999999999999743210
Q ss_pred -----------ceEEEeecCCCcEEEEEeccCCCccc---eEEEeccccceeeEEEcCCCCCEEEEEeCCCc---EEEEe
Q psy9316 132 -----------QIMLASGSFDKSVAIFALDKKGDLNK---EVVYRGHTGSVDQLCWHATNPDLLSTASGDKT---VRIWD 194 (264)
Q Consensus 132 -----------~~~~~~~~~d~~i~i~~~~~~~~~~~---~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~---i~iwD 194 (264)
...+++|+.|+.|++|++........ ...+.+|..+|.+++|+|+ +.+|++|+.|++ |++||
T Consensus 184 ~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~l~sgs~D~t~~~i~lwd 262 (393)
T d1sq9a_ 184 SQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYE 262 (393)
T ss_dssp CCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS-TTEEEEEEEETTEEEEEEEE
T ss_pred CCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccc-cceeeeecCCCCcceeeecc
Confidence 01578999999999999865432211 1234679999999999985 578999998875 89999
Q ss_pred CCCCcceeE---------------eecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeee
Q psy9316 195 ARTQKSQII---------------ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETR 256 (264)
Q Consensus 195 ~~t~~~~~~---------------~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~ 256 (264)
+++++.... .+.+.+.+++|+|+|++|++|+.|+.|++||+.++ +...+++||..++.
T Consensus 263 ~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g----~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 263 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK----ERITTLNMHCDDIE 335 (393)
T ss_dssp TTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCGGGCS
T ss_pred cccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC----CEEEEECCcCCccc
Confidence 998764221 23456889999999999999999999999998765 34456677776553
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=1.5e-23 Score=180.37 Aligned_cols=160 Identities=14% Similarity=0.277 Sum_probs=129.8
Q ss_pred CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
.++|+|++|+|+|++|++|+.|+.|++|++.. +.......+++|.+.|.+++|+|++ ++|++++.|++|++||++++.
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~-~~~~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~~~ 84 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRT 84 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCC-CCEEEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEEEEeecccc
Confidence 46899999999999999999999999999864 3333345578999999999999955 789999999999999987543
Q ss_pred cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--Ee----
Q psy9316 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IA---- 204 (264)
Q Consensus 131 ~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~---- 204 (264)
... ...+.+|...|.+++|+|+ +..|++++.|+.+++|+++...... ..
T Consensus 85 ~~~------------------------~~~~~~~~~~v~~i~~~p~-~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~ 139 (371)
T d1k8kc_ 85 WKP------------------------TLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQENDWWVCKHIKKP 139 (371)
T ss_dssp EEE------------------------EEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred ccc------------------------ccccccccccccccccccc-cccceeecccCcceeeeeecccccccccccccc
Confidence 211 1123467789999999985 5788999999999999987665321 11
Q ss_pred ecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 205 TKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 205 ~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
+...+.+++|+|++++|++|+.|+.+++||...
T Consensus 140 ~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~ 172 (371)
T d1k8kc_ 140 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 172 (371)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred cccccccccccccccceeccccCcEEEEEeecc
Confidence 234678999999999999999999999999864
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1e-22 Score=172.30 Aligned_cols=224 Identities=19% Similarity=0.226 Sum_probs=160.9
Q ss_pred eEeecCCCC-C--ceEeecC-CCeeEEEeecCceEEeccccc--c--------ccccccCCCCEEEEEECCCCCeEEEEE
Q psy9316 5 VIQFHTPKS-P--EYKLLPS-GSQFHLVCKIDDYVKHFNTHN--D--------IKEYQAHGSKVHSVAWSCDGRRLASGS 70 (264)
Q Consensus 5 ~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~d~~~~~~~~~~--~--------~~~~~~h~~~V~~l~~s~~g~~l~s~s 70 (264)
+.+|.++.. + -.++.|. ++.+.++++.|+.+++|+... . ...+..|.++|.+++|++++++|++++
T Consensus 55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 134 (325)
T d1pgua1 55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 134 (325)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence 445555543 2 2367664 345666899999999996532 1 123567889999999999999998876
Q ss_pred C--CCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc-----------------
Q psy9316 71 F--DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS----------------- 131 (264)
Q Consensus 71 ~--dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------------- 131 (264)
. ++.+.+|+.+.. .....+.+|...|.+++|+|.++.++++++.|+.+++||+...+.
T Consensus 135 ~~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v 211 (325)
T d1pgua1 135 EGRDNFGVFISWDSG---NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV 211 (325)
T ss_dssp CCSSCSEEEEETTTC---CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE
T ss_pred ccccceEEEEeeccc---ccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEe
Confidence 4 678999987642 223346789999999999998877888999999999999865321
Q ss_pred ------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcC--CCCCEEEEEeCCCcEEEEeCCCCcceeE
Q psy9316 132 ------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA--TNPDLLSTASGDKTVRIWDARTQKSQII 203 (264)
Q Consensus 132 ------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~--~~~~~i~s~~~dg~i~iwD~~t~~~~~~ 203 (264)
...+++++.|+.|.+|+.+... ....+.+|..++..+.|++ .++.+|++++.|+.|+|||+++++....
T Consensus 212 ~~~pd~~~~l~s~~~d~~i~iwd~~~~~---~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~ 288 (325)
T d1pgua1 212 EFSPDSGEFVITVGSDRKISCFDGKSGE---FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK 288 (325)
T ss_dssp EECSTTCCEEEEEETTCCEEEEETTTCC---EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred eeccccceeccccccccceeeeeecccc---ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 1357889999999999976533 2234567777665555542 2457899999999999999998875322
Q ss_pred e--ecC--ceE--EEEEcCCCCEEEEeeCCCeEEEEEc
Q psy9316 204 A--TKG--ENI--NITWAPNGNTIAVGNKEDLVTFIDV 235 (264)
Q Consensus 204 ~--~~~--~~~--~v~~sp~g~~la~gs~d~~i~~~d~ 235 (264)
. +.. ... ++.|.+ +.+|++|+.|+.|++||+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~-~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 289 WTLDKQQLGNQQVGVVATG-NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EECCTTCGGGCEEEEEEEE-TTEEEEEETTSCEEEEET
T ss_pred EEecCCcccCeEEEEEECC-CCEEEEEECCCEEEEEEC
Confidence 2 221 122 344444 347889999999999995
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=9.1e-23 Score=170.14 Aligned_cols=204 Identities=22% Similarity=0.321 Sum_probs=144.4
Q ss_pred ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcE
Q psy9316 42 NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 121 (264)
Q Consensus 42 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i 121 (264)
...+.+++|.+.|.+ +++++|++|++||.||+|++||+.. +. ....+.+|.+.|.+++|++ .++++++.|+.+
T Consensus 7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~-~~--~~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~~ 79 (342)
T d2ovrb2 7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT-GK--CLRTLVGHTGGVWSSQMRD---NIIISGSTDRTL 79 (342)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT-CC--EEEECCCCSSCEEEEEEET---TEEEEEETTSCE
T ss_pred CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCC-CC--EEEEEeCCCCCEEEEEeCC---Cccccceecccc
Confidence 345678999998754 3556799999999999999999864 22 3345789999999999975 489999999999
Q ss_pred EEEECCCCCcc---------------------------------------------------------------------
Q psy9316 122 RIWDARTQKSQ--------------------------------------------------------------------- 132 (264)
Q Consensus 122 ~vwd~~~~~~~--------------------------------------------------------------------- 132 (264)
++|+.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 159 (342)
T d2ovrb2 80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV 159 (342)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred cccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence 99987542100
Q ss_pred ----------------------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEE
Q psy9316 133 ----------------------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA 184 (264)
Q Consensus 133 ----------------------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~ 184 (264)
..+++++.|+.|++|+++... ....+.+|...+.++.+++ .+|+++
T Consensus 160 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~---~~l~s~ 233 (342)
T d2ovrb2 160 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN---CIHTLTGHQSLTSGMELKD---NILVSG 233 (342)
T ss_dssp EEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC---EEEEECCCCSCEEEEEEET---TEEEEE
T ss_pred EEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccce---eeeEecccccceeEEecCC---CEEEEE
Confidence 024566777777777765432 2234567888898888864 589999
Q ss_pred eCCCcEEEEeCCCCcceeEee--cCc-eEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCc-ccCcccceeeeee
Q psy9316 185 SGDKTVRIWDARTQKSQIIAT--KGE-NINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERT-LTSRGHLMETRSL 258 (264)
Q Consensus 185 ~~dg~i~iwD~~t~~~~~~~~--~~~-~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~-~~~~~h~~~~~~~ 258 (264)
+.||.|++||+...+...... ..+ ....+++++++++++|+.|+.|++||++++...++-. ....+|...+.+|
T Consensus 234 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v 311 (342)
T d2ovrb2 234 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 311 (342)
T ss_dssp ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred cCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEE
Confidence 999999999999876533221 111 1223445567899999999999999998765433211 1234666666543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=6e-22 Score=161.57 Aligned_cols=203 Identities=19% Similarity=0.345 Sum_probs=148.5
Q ss_pred eecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCC---------
Q psy9316 18 LLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDL--------- 86 (264)
Q Consensus 18 ~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~--------- 86 (264)
+-+. ++++++++.|+.|++|+. .+.++++.+|.+.|.+++| ++++|++|+.|+.|++|++......
T Consensus 21 ~~~d-~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~ 97 (293)
T d1p22a2 21 LQYD-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA 97 (293)
T ss_dssp EECC-SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC
T ss_pred EEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccc
Confidence 4444 456788999999999975 5678889999999999887 5789999999999999987542100
Q ss_pred -------------------------------cccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc---
Q psy9316 87 -------------------------------NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--- 132 (264)
Q Consensus 87 -------------------------------~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--- 132 (264)
.....+..|...+..+.+.+ ..+++++.|+.+++||+++.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~ 174 (293)
T d1p22a2 98 VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTL 174 (293)
T ss_dssp EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred cccccccccceeecccccceeEeeccccccccccccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEE
Confidence 00011234556666666543 56788999999999999876531
Q ss_pred --------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q psy9316 133 --------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 198 (264)
Q Consensus 133 --------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~ 198 (264)
..+++++.|+.|++|+++.... .....+|...+..+.. +..+|++++.||.|++||+.+.
T Consensus 175 ~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~---~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 175 NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC---LRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHH
T ss_pred cccccccccccCCCCeEEEecCCCEEEEEeccccee---eeeecccceeeeeccc---cceEEEEEcCCCEEEEEECCCC
Confidence 2578899999999999865432 2345667777766543 4568999999999999998542
Q ss_pred c--------ce---eEeecCceEEEEEcCCCCEEEEeeCCCeEEEEE
Q psy9316 199 K--------SQ---IIATKGENINITWAPNGNTIAVGNKEDLVTFID 234 (264)
Q Consensus 199 ~--------~~---~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d 234 (264)
. .. ...+.+.+.+++| ++++|++|+.|+.|++||
T Consensus 249 ~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 249 LDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred ccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 1 11 1224456778888 467899999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=2.7e-23 Score=171.61 Aligned_cols=229 Identities=11% Similarity=0.132 Sum_probs=153.5
Q ss_pred ceEeecCCCCCceEeecCCCeeEEEeecCceEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccC
Q psy9316 4 PVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83 (264)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~ 83 (264)
|+..+.++..|-..+--+. +++++.|+.++.|+..+. .++|...|.++.++++ ..+++++.|+++++|++..
T Consensus 5 ~i~~l~gH~~~I~~l~~s~---l~sgs~Dg~v~~Wd~~~~---~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~- 76 (287)
T d1pgua2 5 VLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSM---HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITK- 76 (287)
T ss_dssp EEEEECCCSSCEEEEETTT---TEEEETTSCEEETTTTEE---ECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEE-
T ss_pred eeEEECCCCCceEEEEECc---EEEEeCCCeEEEEECCCC---CCCCCCCEEEEEecCC-CeEEEEeeccccccccccc-
Confidence 5666777666665543322 777888888888876554 4577788888887754 4567778888888886532
Q ss_pred CCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc----------------eEEEeecCC-CcEEE
Q psy9316 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ----------------IMLASGSFD-KSVAI 146 (264)
Q Consensus 84 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~----------------~~~~~~~~d-~~i~i 146 (264)
......+..+++.+.+ .++..+.++.+.+|+..+++.. ..+++++.+ +.+.+
T Consensus 77 ---------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 145 (287)
T d1pgua2 77 ---------HEFGSQPKVASANNDG--FTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQV 145 (287)
T ss_dssp ---------EECSSCEEEEEECSSS--EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEE
T ss_pred ---------cccccceeeeeeccCC--ceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeee
Confidence 1123345566665532 3334455666777776654321 123444444 57889
Q ss_pred EEeccCCCccceEE-EeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee---EeecCceEEEEEcCC-----
Q psy9316 147 FALDKKGDLNKEVV-YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI---IATKGENINITWAPN----- 217 (264)
Q Consensus 147 ~~~~~~~~~~~~~~-~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~---~~~~~~~~~v~~sp~----- 217 (264)
|++.... .... ...|...+.+++|+|+ +.+|++++.||.|++||+.+.+... ..+...+.+++|+|+
T Consensus 146 ~~~~~~~---~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 221 (287)
T d1pgua2 146 FKLSDLE---VSFDLKTPLRAKPSYISISPS-ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN 221 (287)
T ss_dssp EETTEEE---EEEECSSCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred eeccccc---eeeeeeeccCCceeEEEeccC-ccccccccccccccceeecccccccccccccccccceeeecccccccc
Confidence 9864211 1111 2346678999999985 5788999999999999999876432 234567888999874
Q ss_pred -----CCEEEEeeCCCeEEEEEcccCCCCCCCcccCcccceeeeee
Q psy9316 218 -----GNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258 (264)
Q Consensus 218 -----g~~la~gs~d~~i~~~d~~~~~~~~~~~~~~~~h~~~~~~~ 258 (264)
+.++++|+.|+.|++||++++. +....+.||...+++|
T Consensus 222 ~~~~~~~~l~sgs~D~~i~iw~~~~~~---~~~~~~~~h~~~V~~v 264 (287)
T d1pgua2 222 EEEIEEDLVATGSLDTNIFIYSVKRPM---KIIKALNAHKDGVNNL 264 (287)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTT---CCEEETTSSTTCEEEE
T ss_pred cccCCCCeeEeecCCCeEEEEECCCCC---eEEEEeCCCCCCeEEE
Confidence 5689999999999999987532 3345677999999887
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1.4e-21 Score=163.62 Aligned_cols=201 Identities=21% Similarity=0.324 Sum_probs=147.5
Q ss_pred cccccCCCCE-EEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEE
Q psy9316 45 KEYQAHGSKV-HSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123 (264)
Q Consensus 45 ~~~~~h~~~V-~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~v 123 (264)
.++++|.+.| .|++| ++++|++|+.||+|++||+... .....+++|.+.|.+++|++. .++++++.||.|++
T Consensus 6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~---~~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D~~i~i 78 (355)
T d1nexb2 6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTVRV 78 (355)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTT---EEEEEEECCSSCEEEEEEETT--TEEEEEETTCCEEE
T ss_pred EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCC---cEEEEEECCCCCEEEEEEcCC--CEEEEEeccccccc
Confidence 3578998875 67666 5889999999999999998642 334567899999999999873 58899999999999
Q ss_pred EECCCCCc---------------------ceEEEeecCCCcEEEEEeccCCCccc--------------------eEEEe
Q psy9316 124 WDARTQKS---------------------QIMLASGSFDKSVAIFALDKKGDLNK--------------------EVVYR 162 (264)
Q Consensus 124 wd~~~~~~---------------------~~~~~~~~~d~~i~i~~~~~~~~~~~--------------------~~~~~ 162 (264)
|+....+. ...+++++.|+.|.+|++........ .....
T Consensus 79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T d1nexb2 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 158 (355)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence 99876532 12478889999999999864322110 11122
Q ss_pred ccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 163 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 163 ~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
.|...+..... ++.++++++.|+.+++||+++.+..... ......++.|+|+++++++++.|+.+++||++.+..
T Consensus 159 ~~~~~v~~~~~---~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 235 (355)
T d1nexb2 159 GHMASVRTVSG---HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 235 (355)
T ss_dssp CCSSCEEEEEE---ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE
T ss_pred ecccccccccc---ccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccc
Confidence 34444444433 3468899999999999999987653322 334567889999999999999999999999875433
Q ss_pred CCCCcccCcccceeeeeec
Q psy9316 241 PRERTLTSRGHLMETRSLW 259 (264)
Q Consensus 241 ~~~~~~~~~~h~~~~~~~~ 259 (264)
...+++|...+.++.
T Consensus 236 ----~~~~~~h~~~v~~~~ 250 (355)
T d1nexb2 236 ----MYTLQGHTALVGLLR 250 (355)
T ss_dssp ----EEEECCCSSCCCEEE
T ss_pred ----ccccccccccccccc
Confidence 345667777776653
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=4.8e-21 Score=157.92 Aligned_cols=197 Identities=17% Similarity=0.237 Sum_probs=137.2
Q ss_pred CeeEEEeecCceEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeE
Q psy9316 23 SQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 102 (264)
Q Consensus 23 ~~~~~~~~~d~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i 102 (264)
+...+++++|+.++.|+.... .....+.++.+++++..++++ .++.+.+|+... +... ..+. +...+.
T Consensus 57 ~~~~~s~s~D~~v~~w~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~-~~~~~~-- 124 (287)
T d1pgua2 57 AQEYSSISWDDTLKVNGITKH-----EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFT-GDII--KSVR-LNSPGS-- 124 (287)
T ss_dssp TTCCEEEETTTEEEETTEEEE-----ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTT-CCEE--EEEE-CSSCEE--
T ss_pred CCeEEEEeecccccccccccc-----ccccceeeeeeccCCceEEEe-ecccceeeeccc-eeee--eecc-ccceee--
Confidence 344578999999999876433 234568889999988887775 556678887543 2211 1222 233343
Q ss_pred EEecCCCCeEEEEeCC-CcEEEEECCCCC--------------------cceEEEeecCCCcEEEEEeccCCCccceEEE
Q psy9316 103 CWHATNPDLLSTASGD-KTVRIWDARTQK--------------------SQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161 (264)
Q Consensus 103 ~~~~~~~~~l~s~s~d-g~i~vwd~~~~~--------------------~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~ 161 (264)
++++.+ ..+++++.| +.+++|++...+ ....+++|+.|+.|.+|+....... ...+
T Consensus 125 ~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~--~~~~ 201 (287)
T d1pgua2 125 AVSLSQ-NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK--TSRW 201 (287)
T ss_dssp EEEECS-SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--ECCS
T ss_pred eeeccC-cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccc--cccc
Confidence 345544 455566665 579999975421 1125788999999999997543211 1124
Q ss_pred eccccceeeEEEcCCC---------CCEEEEEeCCCcEEEEeCCCCcceeE---eecCceEEEEEcCCCCEEEEeeCCCe
Q psy9316 162 RGHTGSVDQLCWHATN---------PDLLSTASGDKTVRIWDARTQKSQII---ATKGENINITWAPNGNTIAVGNKEDL 229 (264)
Q Consensus 162 ~~h~~~i~~i~~~~~~---------~~~i~s~~~dg~i~iwD~~t~~~~~~---~~~~~~~~v~~sp~g~~la~gs~d~~ 229 (264)
..|..+|.+++|+|.. ..++++|+.|+.|++||+++...... .+.+.+.+++|+|++ .|++++.|+.
T Consensus 202 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~ 280 (287)
T d1pgua2 202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADAC 280 (287)
T ss_dssp CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSC
T ss_pred cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCe
Confidence 5788999999999843 46899999999999999987443222 345678999999986 5788889999
Q ss_pred EEEEEc
Q psy9316 230 VTFIDV 235 (264)
Q Consensus 230 i~~~d~ 235 (264)
|++||+
T Consensus 281 v~iW~i 286 (287)
T d1pgua2 281 IKRWNV 286 (287)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=1.1e-21 Score=162.88 Aligned_cols=236 Identities=14% Similarity=0.152 Sum_probs=158.1
Q ss_pred CceEeecCCCeeEEEeecCceEEeccccc-----cccccccCCCCEEEEEECCC-CCeEEEEECCCcEEEEEeccCCCCc
Q psy9316 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTHN-----DIKEYQAHGSKVHSVAWSCD-GRRLASGSFDKSVAIFALDKKGDLN 87 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~~~~~~h~~~V~~l~~s~~-g~~l~s~s~dg~i~v~~~~~~~~~~ 87 (264)
...+|.|.+. ++++++.|+.+++|+... .+....+|.++|.+++|+|+ +.+|++|+.|+.|++|++.......
T Consensus 15 ~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~ 93 (342)
T d1yfqa_ 15 SDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ 93 (342)
T ss_dssp EEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE
T ss_pred EEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccc
Confidence 4558888775 567899999999997532 22333479999999999986 5689999999999999876432110
Q ss_pred cc---------EE--------------------Ee---------------cc--cccEEeEEEecCCCCeEEEEeCCCcE
Q psy9316 88 KE---------VV--------------------YR---------------GH--TGSVDQLCWHATNPDLLSTASGDKTV 121 (264)
Q Consensus 88 ~~---------~~--------------------~~---------------~h--~~~v~~i~~~~~~~~~l~s~s~dg~i 121 (264)
.. .. +. .+ ........+.+ ....+++++.|+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i 172 (342)
T d1yfqa_ 94 ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIVGMNNSQV 172 (342)
T ss_dssp ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEEEESTTEE
T ss_pred cccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec-cCCceeeecCCCcE
Confidence 00 00 00 00 00111122333 33567788899999
Q ss_pred EEEECCCCCc-----------------------ceEEEeecCCCcEEEEEeccCCCccc---eEE---------Eecccc
Q psy9316 122 RIWDARTQKS-----------------------QIMLASGSFDKSVAIFALDKKGDLNK---EVV---------YRGHTG 166 (264)
Q Consensus 122 ~vwd~~~~~~-----------------------~~~~~~~~~d~~i~i~~~~~~~~~~~---~~~---------~~~h~~ 166 (264)
++||++.... ...+++++.|+.+.+|.++....... ... ...|..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (342)
T d1yfqa_ 173 QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252 (342)
T ss_dssp EEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC
T ss_pred EEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccc
Confidence 9999865431 12467888999999998764332110 011 134666
Q ss_pred ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee-cCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCCCCCCc
Q psy9316 167 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT-KGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERT 245 (264)
Q Consensus 167 ~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~-~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~~~~~~ 245 (264)
.|++++|+|.+ .+|+||+.||.|++||+++++...... ......++|+|+|+.|++|+.|+.+++|....
T Consensus 253 ~v~~l~~sp~~-~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~-------- 323 (342)
T d1yfqa_ 253 PVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAID-------- 323 (342)
T ss_dssp CEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSSC--------
T ss_pred cceeEEecCCc-cEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeC--------
Confidence 78999999964 678999999999999999987543332 23456688999999999999999887775321
Q ss_pred ccCcccceeeeeecc
Q psy9316 246 LTSRGHLMETRSLWG 260 (264)
Q Consensus 246 ~~~~~h~~~~~~~~~ 260 (264)
.+...|..++-.+|.
T Consensus 324 ~~~~~~~~~i~~~~~ 338 (342)
T d1yfqa_ 324 QTIELNASSIYIIFD 338 (342)
T ss_dssp TTSCCCCCEEEEEET
T ss_pred CCccCCCCeEEEEcC
Confidence 134455566666654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=6.9e-20 Score=158.38 Aligned_cols=186 Identities=15% Similarity=0.178 Sum_probs=127.1
Q ss_pred eeEEEeecCceEEeccccc--------------------cccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccC
Q psy9316 24 QFHLVCKIDDYVKHFNTHN--------------------DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83 (264)
Q Consensus 24 ~~~~~~~~d~~~~~~~~~~--------------------~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~ 83 (264)
+..++++.|+.++.|+... .......+...+.+++|+|++ +|++|+.|++|++||+...
T Consensus 137 ~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~ 215 (393)
T d1sq9a_ 137 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL 215 (393)
T ss_dssp EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred cEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc
Confidence 4556788899998876421 111223455678999999997 8899999999999998653
Q ss_pred CCCc---ccEEEecccccEEeEEEecCCCCeEEEEeCCCc---EEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccc
Q psy9316 84 GDLN---KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT---VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNK 157 (264)
Q Consensus 84 ~~~~---~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~---i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~ 157 (264)
.... ....+.+|...|.+++|+|++ ++|++|+.|++ |++||+++++....+... ......
T Consensus 216 ~~~~~~~~~~~l~~h~~~V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~-------------~~~~~~ 281 (393)
T d1sq9a_ 216 RPLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVP-------------THSSQA 281 (393)
T ss_dssp EEEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------------------
T ss_pred ccccccccccccccccceEEEccccccc-ceeeeecCCCCcceeeecccccceeeeeeccc-------------cccccc
Confidence 2111 112345799999999999955 78999998874 899999886543222110 000111
Q ss_pred eEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee--EeecCce----EEEEEcCCCCEEEEee
Q psy9316 158 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--IATKGEN----INITWAPNGNTIAVGN 225 (264)
Q Consensus 158 ~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~--~~~~~~~----~~v~~sp~g~~la~gs 225 (264)
...+.+|...|++++|+|+ +.+|+|++.|++|+|||++++++.. ..+.+.+ ..++|+|++..+++++
T Consensus 282 ~~~~~gH~~~V~~l~fspd-~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 282 SLGEFAHSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp --CCBSBSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred eeeeecccCceeeeccCCC-CCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence 1234689999999999985 5799999999999999999987532 2233322 2467888888776544
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.80 E-value=4.8e-18 Score=142.95 Aligned_cols=218 Identities=9% Similarity=0.074 Sum_probs=144.4
Q ss_pred eEeecCCCeeEEEeecCc--eEEecccc-ccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEE
Q psy9316 16 YKLLPSGSQFHLVCKIDD--YVKHFNTH-NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY 92 (264)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~--~~~~~~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~ 92 (264)
..|.|.|.. +++++.++ .+++|+.. ...+.+..|.+.|.+++|+|++++|++++.++.+.+|++.... ....+
T Consensus 48 ~~~spDg~~-l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~---~~~~~ 123 (360)
T d1k32a3 48 VRRGGDTKV-AFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK---PTVIE 123 (360)
T ss_dssp EEECSSSEE-EEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEE
T ss_pred EEECCCCCE-EEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccc---eeeee
Confidence 367776754 34444443 67888654 4566778999999999999999999999999999999986422 23456
Q ss_pred ecccccEEeEEEecCCCCeEEEE----------eCCCcEEEEECCCCCcc------------------eEEEeecCCCcE
Q psy9316 93 RGHTGSVDQLCWHATNPDLLSTA----------SGDKTVRIWDARTQKSQ------------------IMLASGSFDKSV 144 (264)
Q Consensus 93 ~~h~~~v~~i~~~~~~~~~l~s~----------s~dg~i~vwd~~~~~~~------------------~~~~~~~~d~~i 144 (264)
..|...+.+++|+|++ ++|+.+ ..++.+++||+.+++.. ..++.++.++.+
T Consensus 124 ~~~~~~~~~~~~spdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~ 202 (360)
T d1k32a3 124 RSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLD 202 (360)
T ss_dssp ECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCC
T ss_pred ecccccccchhhccce-eeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCce
Confidence 6788889999999966 555533 34556899999875321 135566666666
Q ss_pred EEEEeccCCC----ccc------------------------------------e----------EEEeccccceeeEEEc
Q psy9316 145 AIFALDKKGD----LNK------------------------------------E----------VVYRGHTGSVDQLCWH 174 (264)
Q Consensus 145 ~i~~~~~~~~----~~~------------------------------------~----------~~~~~h~~~i~~i~~~ 174 (264)
.+|+...... ... . ..+..+...+..+.+.
T Consensus 203 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (360)
T d1k32a3 203 PSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282 (360)
T ss_dssp CEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECC
T ss_pred EcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEE
Confidence 6665321100 000 0 0011111222222222
Q ss_pred CCCC--CEEEEEeCCCcEEEEeCCCCcceeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccCCC
Q psy9316 175 ATNP--DLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 175 ~~~~--~~i~s~~~dg~i~iwD~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~~ 240 (264)
+.+. .++++++.++.+++||+++++.. .+.+.+.+++|||||++|++++.||.|++||+.++..
T Consensus 283 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~ 348 (360)
T d1k32a3 283 VHGEFAAYYQGAPEKGVLLKYDVKTRKVT--EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348 (360)
T ss_dssp CCCSHHHHHHCCCCCEEEEEEETTTCCEE--EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred ecCCCeeEEEecCCCCEEEEEECCCCeEE--EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence 2211 13556778999999999987642 3345678899999999999999999999999876543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.80 E-value=3e-18 Score=149.75 Aligned_cols=104 Identities=14% Similarity=0.030 Sum_probs=77.9
Q ss_pred eEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccE--EEecccccEE
Q psy9316 25 FHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV--VYRGHTGSVD 100 (264)
Q Consensus 25 ~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~--~~~~h~~~v~ 100 (264)
+.++.+.|+.+++|+. .+.++++..|. .+..++|+|||++|++++.|+++++||+.......... ....|...+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 3455778999999976 45677887764 58999999999999999999999999987643211111 1225666777
Q ss_pred eEEEecCCCCeEEEEeCCCcEEEEECCCC
Q psy9316 101 QLCWHATNPDLLSTASGDKTVRIWDARTQ 129 (264)
Q Consensus 101 ~i~~~~~~~~~l~s~s~dg~i~vwd~~~~ 129 (264)
++.|+|++..+++++..++.+++||..+.
T Consensus 113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~ 141 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETL 141 (426)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred eeeecCCCCEEEEeecCCCeEEEEcCCcc
Confidence 78888877555666668999999998764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.79 E-value=3e-18 Score=144.25 Aligned_cols=187 Identities=9% Similarity=0.076 Sum_probs=136.4
Q ss_pred eecCCCeeEEEeecCceEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCC--cEEEEEeccCCCCcccEEEecc
Q psy9316 18 LLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDK--SVAIFALDKKGDLNKEVVYRGH 95 (264)
Q Consensus 18 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg--~i~v~~~~~~~~~~~~~~~~~h 95 (264)
|.|.++.+.+++ .++.+.+|+.........+|.+.|.+++|+|||++|++++.+. .|++|+... +. ...+..|
T Consensus 10 fSP~dG~~~a~~-~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~-~~---~~~~~~~ 84 (360)
T d1k32a3 10 FSPLDGDLIAFV-SRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT-GK---AEKFEEN 84 (360)
T ss_dssp EEECGGGCEEEE-ETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT-CC---EEECCCC
T ss_pred ccCCCCCEEEEE-ECCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC-Cc---EEEeeCC
Confidence 556433333333 3567777766443222337999999999999999998877554 799999764 22 2345689
Q ss_pred cccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcC
Q psy9316 96 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 175 (264)
Q Consensus 96 ~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~ 175 (264)
...|.+++|+|++ +++++++.++.+++|++.+.+... .+..|...+..++|+|
T Consensus 85 ~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~sp 137 (360)
T d1k32a3 85 LGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTV--------------------------IERSREAMITDFTISD 137 (360)
T ss_dssp CCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEE--------------------------EEECSSSCCCCEEECT
T ss_pred CceEEeeeecccc-cccceeccccccccccccccceee--------------------------eeecccccccchhhcc
Confidence 9999999999965 788899999999999998654221 2345667788899998
Q ss_pred CCCCEEEE----------EeCCCcEEEEeCCCCcceeE-eecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 176 TNPDLLST----------ASGDKTVRIWDARTQKSQII-ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 176 ~~~~~i~s----------~~~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
++ .+|+. +..++.+++||+.+++.... ........++|+|+|++|++++.++.+.+||...
T Consensus 138 dg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~ 209 (360)
T d1k32a3 138 NS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209 (360)
T ss_dssp TS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred ce-eeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccc
Confidence 65 55553 33456799999998765333 2344567789999999999999999999999654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.66 E-value=4.2e-15 Score=130.14 Aligned_cols=196 Identities=10% Similarity=-0.028 Sum_probs=137.4
Q ss_pred EEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccE--EEecccccEEe
Q psy9316 26 HLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV--VYRGHTGSVDQ 101 (264)
Q Consensus 26 ~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~--~~~~h~~~v~~ 101 (264)
.++.+-++.+.+|+. .+.++++..|. .+..++|+|||++|++++.|+.+.+||+.......... ....|.+.+..
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s 113 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113 (432)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence 356778899999865 46777887664 68999999999999999999999999987543211111 12346666777
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEE
Q psy9316 102 LCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLL 181 (264)
Q Consensus 102 i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i 181 (264)
..|+|++..++++++.++.+++||..+++....+..... ..... ...+......+.++|++..++
T Consensus 114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~------------~~~~~---~~~~~~~~~~v~~s~dg~~~~ 178 (432)
T d1qksa2 114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM------------TYDEQ---EYHPEPRVAAILASHYRPEFI 178 (432)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE------------CTTTC---CEESCCCEEEEEECSSSSEEE
T ss_pred cccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCc------------cccce---eccCCCceeEEEECCCCCEEE
Confidence 777887755668888899999999988764432211100 00000 012344566788888877778
Q ss_pred EEEeCCCcEEEEeCCCCccee--E-eecCceEEEEEcCCCCEEEEeeC-CCeEEEEEccc
Q psy9316 182 STASGDKTVRIWDARTQKSQI--I-ATKGENINITWAPNGNTIAVGNK-EDLVTFIDVVK 237 (264)
Q Consensus 182 ~s~~~dg~i~iwD~~t~~~~~--~-~~~~~~~~v~~sp~g~~la~gs~-d~~i~~~d~~~ 237 (264)
++...++.|.+||..+.+... . .....+..++|+|+|+++++++. ++.+.++|...
T Consensus 179 vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~ 238 (432)
T d1qksa2 179 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238 (432)
T ss_dssp EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred EEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence 888899999999998865322 2 22345678999999998876654 56788888764
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.64 E-value=2.7e-13 Score=110.64 Aligned_cols=221 Identities=16% Similarity=0.144 Sum_probs=143.3
Q ss_pred cCCCCCce-EeecCCCeeEEEeecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCC
Q psy9316 9 HTPKSPEY-KLLPSGSQFHLVCKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKG 84 (264)
Q Consensus 9 ~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~ 84 (264)
.....|.. .+.|.|..+.+++..++.++.|+. .+.++++..|. .+..+.|+++++.++.++ .++.+.+|+....
T Consensus 29 ~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 106 (301)
T d1l0qa2 29 PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN- 106 (301)
T ss_dssp ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-
T ss_pred ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccc-
Confidence 33344444 677777766566777889999875 45566676665 468899999998776654 5678999986532
Q ss_pred CCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce-------------------EEEeecCCCcEE
Q psy9316 85 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-------------------MLASGSFDKSVA 145 (264)
Q Consensus 85 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-------------------~~~~~~~d~~i~ 145 (264)
.....+. +......+.++|++..+++++..++.+.+|+..+.+... .+++...++.+.
T Consensus 107 --~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (301)
T d1l0qa2 107 --TVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183 (301)
T ss_dssp --EEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred --eeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccc
Confidence 1112233 445677889999776667777789999999987754221 112222223333
Q ss_pred EEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEe--CCCcEEEEeCCCCcceeE-eecCceEEEEEcCCCCEE-
Q psy9316 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS--GDKTVRIWDARTQKSQII-ATKGENINITWAPNGNTI- 221 (264)
Q Consensus 146 i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~--~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~l- 221 (264)
++..... ..............+.+++++..+++++. .++.|++||+.+.+.... .....+..++|+|||++|
T Consensus 184 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~ 259 (301)
T d1l0qa2 184 VIDTVTN----SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVY 259 (301)
T ss_dssp EEETTTT----EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEE
T ss_pred cccccce----eeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEE
Confidence 3332211 11111222345667888887655554433 357899999999875333 334567899999999987
Q ss_pred EEeeCCCeEEEEEcccC
Q psy9316 222 AVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 222 a~gs~d~~i~~~d~~~~ 238 (264)
++++.|+.|.+||+.++
T Consensus 260 va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 260 VALSFCNTVSVIDTATN 276 (301)
T ss_dssp EEETTTTEEEEEETTTT
T ss_pred EEECCCCeEEEEECCCC
Confidence 56778999999998764
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=2.2e-13 Score=112.92 Aligned_cols=209 Identities=11% Similarity=0.131 Sum_probs=125.8
Q ss_pred EEeecCceEEecccc--cccccc--ccCCCCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEecccccEEe
Q psy9316 27 LVCKIDDYVKHFNTH--NDIKEY--QAHGSKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101 (264)
Q Consensus 27 ~~~~~d~~~~~~~~~--~~~~~~--~~h~~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~ 101 (264)
+++..++.|++|+.. ..++.+ ..|.+.+..|+|+|||++|++++ .|+.|.+|+++.............+...+..
T Consensus 8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~ 87 (333)
T d1ri6a_ 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH 87 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSE
T ss_pred EECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceE
Confidence 345678889998742 223333 36888999999999999997665 4899999998754332221112234455778
Q ss_pred EEEecCCCCeEEEEe-CCCcEEEEECCCCCcc----------------------eEEEeecCCCcEEEEEeccCCCcc--
Q psy9316 102 LCWHATNPDLLSTAS-GDKTVRIWDARTQKSQ----------------------IMLASGSFDKSVAIFALDKKGDLN-- 156 (264)
Q Consensus 102 i~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~----------------------~~~~~~~~d~~i~i~~~~~~~~~~-- 156 (264)
++|+|++ +++++++ .++.+.+|+....... ..+.....+..+.+|+........
T Consensus 88 l~~spDg-~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (333)
T d1ri6a_ 88 ISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ 166 (333)
T ss_dssp EEECTTS-SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred EEEcCCC-CEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceee
Confidence 9999976 4555555 5778888876543210 111222222334444332111000
Q ss_pred -----------------------------------------------c-eEEEe------ccccceeeEEEcCCCCCEEE
Q psy9316 157 -----------------------------------------------K-EVVYR------GHTGSVDQLCWHATNPDLLS 182 (264)
Q Consensus 157 -----------------------------------------------~-~~~~~------~h~~~i~~i~~~~~~~~~i~ 182 (264)
. ..... ........+.+++++..+++
T Consensus 167 ~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~ 246 (333)
T d1ri6a_ 167 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA 246 (333)
T ss_dssp EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE
T ss_pred eceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceee
Confidence 0 00000 01122345677877666777
Q ss_pred EEeCCCcEEEEeCCCCccee--Ee---ecCceEEEEEcCCCCEEEEee-CCCeEEEEEcc
Q psy9316 183 TASGDKTVRIWDARTQKSQI--IA---TKGENINITWAPNGNTIAVGN-KEDLVTFIDVV 236 (264)
Q Consensus 183 s~~~dg~i~iwD~~t~~~~~--~~---~~~~~~~v~~sp~g~~la~gs-~d~~i~~~d~~ 236 (264)
++..++.+.+|++....... .. ....+..++|+|||++|+++. .++.|.+|++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 247 CDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp EETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 78888999999887654321 11 123466899999999987664 56899999764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.59 E-value=3.1e-14 Score=118.40 Aligned_cols=213 Identities=8% Similarity=0.041 Sum_probs=127.2
Q ss_pred CCeeEEEeecCceEEecccc--ccccccc-cCCCCEEEEEECCCCCeEEE-EECCCcEEEEEeccCCCCcccEEE----e
Q psy9316 22 GSQFHLVCKIDDYVKHFNTH--NDIKEYQ-AHGSKVHSVAWSCDGRRLAS-GSFDKSVAIFALDKKGDLNKEVVY----R 93 (264)
Q Consensus 22 ~~~~~~~~~~d~~~~~~~~~--~~~~~~~-~h~~~V~~l~~s~~g~~l~s-~s~dg~i~v~~~~~~~~~~~~~~~----~ 93 (264)
++.+.++++.++.+..|+.. +.++++. .|...+.+++|+|||++++. ++.++.|.+||+....... .... .
T Consensus 7 ~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~-~~~~~~~~~ 85 (346)
T d1jmxb_ 7 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF-HANLSSVPG 85 (346)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEESCCSTT
T ss_pred CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee-eeccccccc
Confidence 34566778889999998764 5566665 45667889999999998865 4578999999986532111 0000 0
Q ss_pred cccccEEeEEEecCCCCeEEEEe------------CCCcEEEEECCCCCcce-----------EEEeecCCCc-------
Q psy9316 94 GHTGSVDQLCWHATNPDLLSTAS------------GDKTVRIWDARTQKSQI-----------MLASGSFDKS------- 143 (264)
Q Consensus 94 ~h~~~v~~i~~~~~~~~~l~s~s------------~dg~i~vwd~~~~~~~~-----------~~~~~~~d~~------- 143 (264)
.+...+..+.|+|++. ++++++ .++.+.+||..+++... .++..+.|+.
T Consensus 86 ~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (346)
T d1jmxb_ 86 EVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD 164 (346)
T ss_dssp EEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSS
T ss_pred ccCCceEEEEEecCCC-EEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCc
Confidence 1122345667777553 333332 35667777765432110 0011111111
Q ss_pred EEEEEecc-----------------------------------------------------------------CCCccce
Q psy9316 144 VAIFALDK-----------------------------------------------------------------KGDLNKE 158 (264)
Q Consensus 144 i~i~~~~~-----------------------------------------------------------------~~~~~~~ 158 (264)
+.+|+... .......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (346)
T d1jmxb_ 165 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT 244 (346)
T ss_dssp EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE
T ss_pred ceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEE
Confidence 11111100 0000001
Q ss_pred EEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE-eecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 159 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII-ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 159 ~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.....|...+..+.+++.+..++ .. .++.+++||..+++.... .....+.+++|||||++|++++.|+.|++||+.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t 322 (346)
T d1jmxb_ 245 QEFADLTELYFTGLRSPKDPNQI-YG-VLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322 (346)
T ss_dssp EEEEECSSCEEEEEECSSCTTEE-EE-EESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred EEeecccceeEEEEEeCCCCEEE-Ee-cCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence 12234555667777877665544 33 356899999999875333 3345678999999999999999999999999875
Q ss_pred C
Q psy9316 238 S 238 (264)
Q Consensus 238 ~ 238 (264)
.
T Consensus 323 ~ 323 (346)
T d1jmxb_ 323 L 323 (346)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.56 E-value=3.3e-13 Score=111.55 Aligned_cols=72 Identities=8% Similarity=-0.000 Sum_probs=54.3
Q ss_pred cccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 164 h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
+......+.++|.. .+++. .++.+++||+++++... ......+.+++|+|||++|++++.|+.|.+||+.++
T Consensus 239 ~~~~~~~~~~~~~~-~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 239 MDVFYFSTAVNPAK-TRAFG--AYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp CSSCEEEEEECTTS-SEEEE--EESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred CCcceEEEEecccc-eEEEE--ccccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 34455566776644 44443 36899999999987533 334556789999999999999999999999998764
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.51 E-value=5.1e-12 Score=102.82 Aligned_cols=201 Identities=13% Similarity=0.136 Sum_probs=134.9
Q ss_pred eecCceEEeccc--cccccccccCCCCEEEEEECCCCCeEE-EEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEe
Q psy9316 29 CKIDDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLA-SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 105 (264)
Q Consensus 29 ~~~d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~-s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 105 (264)
.+.++.|..|+. .+.++++.. .+.+..++|+|||++|+ +++.++.|.+||+.... ....+..+. .+..+.|+
T Consensus 8 ~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~---~~~~~~~~~-~~~~~~~~ 82 (301)
T d1l0qa2 8 NSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN---VIATVPAGS-SPQGVAVS 82 (301)
T ss_dssp ETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE---EEEEEECSS-SEEEEEEC
T ss_pred ECCCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc---eeeeeeccc-cccccccc
Confidence 456788888865 445566643 35678999999999885 55678999999986422 223344443 46788999
Q ss_pred cCCCCeEEEEeCCCcEEEEECCCCCcce-------------------EEEeecCCCcEEEEEeccCCCccceEEEecccc
Q psy9316 106 ATNPDLLSTASGDKTVRIWDARTQKSQI-------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166 (264)
Q Consensus 106 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~-------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~ 166 (264)
+++...++++..++.+.+||..+++... .++++..+..+.+|+...... .....+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 158 (301)
T d1l0qa2 83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV----INTVSVGR 158 (301)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEECCS
T ss_pred cccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccce----eeecccCC
Confidence 8776677777789999999998754221 234455566666776543211 11122344
Q ss_pred ceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-EeecCceEEEEEcCCCCEEEEeeC---CCeEEEEEcccC
Q psy9316 167 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATKGENINITWAPNGNTIAVGNK---EDLVTFIDVVKS 238 (264)
Q Consensus 167 ~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~~~~~~v~~sp~g~~la~gs~---d~~i~~~d~~~~ 238 (264)
....+.++|++..++++...++.+.+|+........ ......+..++++++++.++++.. ++.|.+||+.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~ 234 (301)
T d1l0qa2 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (301)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCC
Confidence 577889998766566555566777788877765432 233455678999999998876643 468999998764
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.40 E-value=1.9e-10 Score=96.74 Aligned_cols=226 Identities=13% Similarity=0.086 Sum_probs=137.9
Q ss_pred eecCCCCCceEeecCCCeeEEEe---------ecCceEEecccc--ccccccccCCCCE-------EEEEECCCCCeEEE
Q psy9316 7 QFHTPKSPEYKLLPSGSQFHLVC---------KIDDYVKHFNTH--NDIKEYQAHGSKV-------HSVAWSCDGRRLAS 68 (264)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~---------~~d~~~~~~~~~--~~~~~~~~h~~~V-------~~l~~s~~g~~l~s 68 (264)
++.....|...+.|.|..+.... ..++.++.|+.. +.+..+..+.... ..+.|+++++.++.
T Consensus 62 ~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v 141 (373)
T d2madh_ 62 HVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLF 141 (373)
T ss_pred EEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEE
Confidence 45556666677777776654332 335677887654 3344444444332 45778888887766
Q ss_pred EE--CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcce-------------
Q psy9316 69 GS--FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI------------- 133 (264)
Q Consensus 69 ~s--~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~------------- 133 (264)
.. .++.+.+|+..... ...+.....++.++|.+...+++.+.|+.+.+||....+...
T Consensus 142 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (373)
T d2madh_ 142 FQFAAGPAVGLVVQGGSS-------DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNL 214 (373)
T ss_pred EEEcCCCceEEeeccCCe-------EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccc
Confidence 54 34567777754311 123444566788899887788899999999999987643211
Q ss_pred -----------EEEeecCCCcEEEEEeccCCCccceEEEecc----------ccceeeEEEcCC---------CCCEEEE
Q psy9316 134 -----------MLASGSFDKSVAIFALDKKGDLNKEVVYRGH----------TGSVDQLCWHAT---------NPDLLST 183 (264)
Q Consensus 134 -----------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h----------~~~i~~i~~~~~---------~~~~i~s 183 (264)
.++..+.++.+.+++........ ......+ ......+.++++ ....+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 293 (373)
T d2madh_ 215 LTQPAQANKSGRIVWPVYSGKILQADISAAGATN-KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL 293 (373)
T ss_pred eeeeEEECCCceEEEecCCceEEEEEcCCCeEEE-EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEe
Confidence 12334456666666654321110 0000000 111222333332 2334556
Q ss_pred EeCCCcEEEEeCCCCcceeE-eecCceEEEEEcCCCCE--EEEeeCCCeEEEEEcccCCC
Q psy9316 184 ASGDKTVRIWDARTQKSQII-ATKGENINITWAPNGNT--IAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 184 ~~~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~--la~gs~d~~i~~~d~~~~~~ 240 (264)
...++.+.+||..+++.... .....+..++|+|||+. +++++.|+.|++||+..+..
T Consensus 294 ~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~ 353 (373)
T d2madh_ 294 HAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred ecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 77788999999999875433 33456788999999984 47889999999999876544
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.31 E-value=1e-10 Score=97.44 Aligned_cols=204 Identities=12% Similarity=0.012 Sum_probs=114.8
Q ss_pred CceEEeccc--cccccccccCCCCEEEEEECCCCCeEEEEE----------CCCcEEEEEeccCCCCcccEEE-ecc---
Q psy9316 32 DDYVKHFNT--HNDIKEYQAHGSKVHSVAWSCDGRRLASGS----------FDKSVAIFALDKKGDLNKEVVY-RGH--- 95 (264)
Q Consensus 32 d~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s----------~dg~i~v~~~~~~~~~~~~~~~-~~h--- 95 (264)
++.+..|+. .+.+.++..+. +..++|+|||++|+.++ .|+.|.+||..... ....... ..+
T Consensus 27 ~~~v~v~D~~tg~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~-~~~~~~~~~~~~~~ 103 (355)
T d2bbkh_ 27 VTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL-PTADIELPDAPRFL 103 (355)
T ss_dssp SEEEEEEETTTTEEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC-EEEEEEETTCCCCC
T ss_pred cCeEEEEECCCCcEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC-EEEEEecCCcceee
Confidence 445666654 34455555444 34789999999988653 47899999986532 2111110 011
Q ss_pred -cccEEeEEEecCCCCeEEEE--eCCCcEEEEECCCCCcce---------------------------------------
Q psy9316 96 -TGSVDQLCWHATNPDLLSTA--SGDKTVRIWDARTQKSQI--------------------------------------- 133 (264)
Q Consensus 96 -~~~v~~i~~~~~~~~~l~s~--s~dg~i~vwd~~~~~~~~--------------------------------------- 133 (264)
......+.|++++. .++.. +.+..+.+||..+++...
T Consensus 104 ~~~~~~~~~~s~dg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~ 182 (355)
T d2bbkh_ 104 VGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE 182 (355)
T ss_dssp BSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred cCCCCceEEEecCCC-eeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEE
Confidence 12234567887654 33333 346678888876643110
Q ss_pred -------------------------EEEeecCCCcEEEEEeccCCCccceEEEecc----------ccceeeEEEcCCCC
Q psy9316 134 -------------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGH----------TGSVDQLCWHATNP 178 (264)
Q Consensus 134 -------------------------~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h----------~~~i~~i~~~~~~~ 178 (264)
.++..+.++.+.+|++..+..... .....+ ......+.++++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~ 261 (355)
T d2bbkh_ 183 ITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFL-PAVEALTEAERADGWRPGGWQQVAYHRALD 261 (355)
T ss_dssp EEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEEC-CCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred EEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEE-eccCCcccceEeeeeeccceEEEEEeCCCC
Confidence 123334455555555543221100 000111 11233466776554
Q ss_pred CEEEEEeC---------CCcEEEEeCCCCccee-EeecCceEEEEEcCCCC--EEEEeeCCCeEEEEEcccCCC
Q psy9316 179 DLLSTASG---------DKTVRIWDARTQKSQI-IATKGENINITWAPNGN--TIAVGNKEDLVTFIDVVKSLP 240 (264)
Q Consensus 179 ~~i~s~~~---------dg~i~iwD~~t~~~~~-~~~~~~~~~v~~sp~g~--~la~gs~d~~i~~~d~~~~~~ 240 (264)
.++++... ...|.+||..+++... ......+.+++|+|||+ +++++..|+.|++||+.++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~ 335 (355)
T d2bbkh_ 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 335 (355)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred eEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence 44433222 2479999999887533 23344567899999998 346677899999999876543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.31 E-value=2.9e-11 Score=105.27 Aligned_cols=148 Identities=10% Similarity=-0.034 Sum_probs=103.7
Q ss_pred CeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCc
Q psy9316 64 RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKS 143 (264)
Q Consensus 64 ~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~ 143 (264)
-++++.+.||+|.+||..... . ...+..+ ..+..++|+|++ +++++++.|+.+++||+++++.......
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~-v--~~~~~~g-~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~~~~i------ 101 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYE-I--KTVLDTG-YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEI------ 101 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCC-E--EEEEECS-SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEE------
T ss_pred EEEEEEcCCCEEEEEECCCCc-E--EEEEeCC-CCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceEEEEE------
Confidence 345788999999999986532 2 2335555 358999999955 7888899999999999987653321100
Q ss_pred EEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe-------------ecCceE
Q psy9316 144 VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA-------------TKGENI 210 (264)
Q Consensus 144 i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~-------------~~~~~~ 210 (264)
.....|...+....|+|++..+++++..++.+++||..+.+..... ......
T Consensus 102 ---------------~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (432)
T d1qksa2 102 ---------------KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 166 (432)
T ss_dssp ---------------ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred ---------------ecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCcee
Confidence 0112344455666777776666789999999999999988753221 112345
Q ss_pred EEEEcCCCCEEE-EeeCCCeEEEEEccc
Q psy9316 211 NITWAPNGNTIA-VGNKEDLVTFIDVVK 237 (264)
Q Consensus 211 ~v~~sp~g~~la-~gs~d~~i~~~d~~~ 237 (264)
.+.++|+|..++ +...++.+.+||..+
T Consensus 167 ~v~~s~dg~~~~vs~~~~~~i~~~d~~~ 194 (432)
T d1qksa2 167 AILASHYRPEFIVNVKETGKILLVDYTD 194 (432)
T ss_dssp EEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred EEEECCCCCEEEEEEccCCeEEEEEccC
Confidence 688999998774 556678999999765
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.30 E-value=2e-11 Score=100.59 Aligned_cols=150 Identities=11% Similarity=0.076 Sum_probs=98.9
Q ss_pred CeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCc
Q psy9316 64 RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKS 143 (264)
Q Consensus 64 ~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~ 143 (264)
+++++++.|++|.+||+... ..........+...+..++|+|++..++++++.++.|.+||+++++....+-...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~-~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~---- 76 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKM-AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST---- 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB----
T ss_pred eEEEEEcCCCEEEEEECCCC-eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC----
Confidence 58999999999999998652 2222111223445678999999765455677889999999999876432221100
Q ss_pred EEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEe-----------CCCcEEEEeCCCCcceeE-eecCceEE
Q psy9316 144 VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS-----------GDKTVRIWDARTQKSQII-ATKGENIN 211 (264)
Q Consensus 144 i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~-----------~dg~i~iwD~~t~~~~~~-~~~~~~~~ 211 (264)
. ..+...+..+.|+|++..++++.. .++.+.+||..+.+.... .....+..
T Consensus 77 ----------~-------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 139 (337)
T d1pbyb_ 77 ----------P-------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITM 139 (337)
T ss_dssp ----------T-------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCC
T ss_pred ----------C-------cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceE
Confidence 0 011223456788876543333322 578899999999875333 33455678
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 212 ITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 212 v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
++|+|+|+++++++.+ +.+||+..
T Consensus 140 ~~~s~dg~~l~~~~~~--~~~~d~~~ 163 (337)
T d1pbyb_ 140 LAWARDGSKLYGLGRD--LHVMDPEA 163 (337)
T ss_dssp EEECTTSSCEEEESSS--EEEEETTT
T ss_pred EEEcCCCCEEEEEcCC--cceeeeec
Confidence 9999999999998755 56788764
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.21 E-value=1e-09 Score=94.64 Aligned_cols=165 Identities=12% Similarity=0.080 Sum_probs=104.6
Q ss_pred eEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc------------
Q psy9316 65 RLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ------------ 132 (264)
Q Consensus 65 ~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------------ 132 (264)
.+++++.||+|++||+.+.. ....++.|. .+..++|+|++ +++++++.|+++++||+.+++..
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~---~~~~l~~g~-~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~ 108 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKK---IVKVIDTGY-AVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR 108 (426)
T ss_dssp EEEEETTTTEEEEEETTTCS---EEEEEECCS-SEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE
T ss_pred EEEEEcCCCEEEEEECCCCc---EEEEEeCCC-CeeEEEECCCC-CEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCc
Confidence 45678889999999987532 223455554 58999999965 67888999999999999876521
Q ss_pred -------------eEEEeecCCCcEEEEEeccCCCccceEEEeccccc-----------eeeEEEcCCCCCEEEEEeCCC
Q psy9316 133 -------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS-----------VDQLCWHATNPDLLSTASGDK 188 (264)
Q Consensus 133 -------------~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~-----------i~~i~~~~~~~~~i~s~~~dg 188 (264)
.+++++..++.+.+|+....... .....|... ...+..++++..++.+....+
T Consensus 109 ~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~ 185 (426)
T d1hzua2 109 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK---QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG 185 (426)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE---EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred ceEEeeeecCCCCEEEEeecCCCeEEEEcCCcccee---EEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCC
Confidence 12455557788888886543211 122222222 333444444444444444455
Q ss_pred cEEEEeCCCCccee---EeecCceEEEEEcCCCCEEEEee-CCCeEEEEEccc
Q psy9316 189 TVRIWDARTQKSQI---IATKGENINITWAPNGNTIAVGN-KEDLVTFIDVVK 237 (264)
Q Consensus 189 ~i~iwD~~t~~~~~---~~~~~~~~~v~~sp~g~~la~gs-~d~~i~~~d~~~ 237 (264)
.+.+++........ ......+..++|+|+|+++.++. .++.+.++|..+
T Consensus 186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~ 238 (426)
T d1hzua2 186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD 238 (426)
T ss_dssp EEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT
T ss_pred eEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccc
Confidence 55555555443211 22334567899999999887765 566688888765
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=2.7e-10 Score=93.74 Aligned_cols=148 Identities=11% Similarity=0.132 Sum_probs=98.3
Q ss_pred EEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEE
Q psy9316 66 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVA 145 (264)
Q Consensus 66 l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~ 145 (264)
+++++.|++|++|+++..+...... .-.|.+.+..++|+|++..+++++..|+.|++|++........+.
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~-~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~--------- 76 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA--------- 76 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEE-EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE---------
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEE-EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe---------
Confidence 3566789999999998655433222 235778899999999765444555569999999987543221110
Q ss_pred EEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeE----eecCceEEEEEcCCCCEE
Q psy9316 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII----ATKGENINITWAPNGNTI 221 (264)
Q Consensus 146 i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~----~~~~~~~~v~~sp~g~~l 221 (264)
....+......++|+|++..++++...++.+.+|+......... .....+.++.++|+++++
T Consensus 77 --------------~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~ 142 (333)
T d1ri6a_ 77 --------------AESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL 142 (333)
T ss_dssp --------------EEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred --------------eecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceee
Confidence 00112234567899997654554444688999998877653222 123346778999999988
Q ss_pred EEee-CCCeEEEEEccc
Q psy9316 222 AVGN-KEDLVTFIDVVK 237 (264)
Q Consensus 222 a~gs-~d~~i~~~d~~~ 237 (264)
++++ .+..+.+|+...
T Consensus 143 ~~~~~~~~~i~~~~~~~ 159 (333)
T d1ri6a_ 143 WVPALKQDRICLFTVSD 159 (333)
T ss_dssp EEEEGGGTEEEEEEECT
T ss_pred eccccccceeeEEEecc
Confidence 7776 556789999765
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.07 E-value=1.2e-09 Score=90.01 Aligned_cols=155 Identities=8% Similarity=0.004 Sum_probs=100.2
Q ss_pred EEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEe-cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceEE
Q psy9316 57 VAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR-GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIML 135 (264)
Q Consensus 57 l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 135 (264)
++|++++++|++++.|++|.+||+.+. +. ...++ .+...+.+++|+|++..++++++.++.|++||+.+++....+
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~-~~--~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~ 78 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASD-TV--YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 78 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTT-EE--EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCC-CE--EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence 468899999999999999999998753 22 22233 345567899999977656677778999999999876543222
Q ss_pred EeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEE-----------eCCCcEEEEeCCCCccee--
Q psy9316 136 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA-----------SGDKTVRIWDARTQKSQI-- 202 (264)
Q Consensus 136 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~-----------~~dg~i~iwD~~t~~~~~-- 202 (264)
..+. .. ..+...+..+.++|++..++++. ..++.+.+||..+++...
T Consensus 79 ~~~~--------------~~------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 138 (346)
T d1jmxb_ 79 NLSS--------------VP------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 138 (346)
T ss_dssp ESCC--------------ST------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred cccc--------------cc------cccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEE
Confidence 1111 00 01112345677887654443332 357889999998765321
Q ss_pred --EeecCceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 203 --IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 203 --~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.........+.++++++.++.+ +.+.+||+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 172 (346)
T d1jmxb_ 139 RTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKT 172 (346)
T ss_dssp EEEECCSSCCCEEECTTSCEEEES---SSEEEECTTT
T ss_pred EeeeccCceEEEEecCCCEEEEeC---CcceEEEccC
Confidence 1122344556778888777653 3477888654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.01 E-value=2.2e-08 Score=84.14 Aligned_cols=224 Identities=13% Similarity=0.068 Sum_probs=124.8
Q ss_pred ecCCCCCceEeecCCCeeEEE---------eecCceEEeccccc--cccccccCC-------CCEEEEEECCCCCeEEEE
Q psy9316 8 FHTPKSPEYKLLPSGSQFHLV---------CKIDDYVKHFNTHN--DIKEYQAHG-------SKVHSVAWSCDGRRLASG 69 (264)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---------~~~d~~~~~~~~~~--~~~~~~~h~-------~~V~~l~~s~~g~~l~s~ 69 (264)
....+.|...+.|.+..+... +..|+.++.|+..+ .+..+..+. .....++|+|||++|+.+
T Consensus 62 ~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va 141 (368)
T d1mdah_ 62 SLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFF 141 (368)
T ss_dssp EEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred EeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEE
Confidence 344455555666666544322 23467788887543 333332221 123468999999999887
Q ss_pred E-CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcceE--------------
Q psy9316 70 S-FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIM-------------- 134 (264)
Q Consensus 70 s-~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------------- 134 (264)
. .++.+.+||+..... ......+.... +.+.+...++..+.||.+.++++........
T Consensus 142 ~~~~~~v~~~d~~~~~~---~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (368)
T d1mdah_ 142 LFGSSAAAGLSVPGASD---DQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS 214 (368)
T ss_dssp ECSSSCEEEEEETTTEE---EEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS
T ss_pred eCCCCeEEEEECCCCcE---eEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccce
Confidence 6 578999999875321 12222222221 1233456677788899988888754322110
Q ss_pred ---------EEeecCCCcEEEEEeccCCCccceEEEec----------cccceeeEEEcCCCCCEEEEEeCC--------
Q psy9316 135 ---------LASGSFDKSVAIFALDKKGDLNKEVVYRG----------HTGSVDQLCWHATNPDLLSTASGD-------- 187 (264)
Q Consensus 135 ---------~~~~~~d~~i~i~~~~~~~~~~~~~~~~~----------h~~~i~~i~~~~~~~~~i~s~~~d-------- 187 (264)
.+....++.+.++++..+...... .... .......+.++|....+++....+
T Consensus 215 ~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~ 293 (368)
T d1mdah_ 215 QAAQANYPGMLVWAVASSILQGDIPAAGATMKA-AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA 293 (368)
T ss_dssp CCEEETTTTEEEECBSSCCEEEECCSSCCEEEC-CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCE
T ss_pred eecccccCcEEEEecCCCEEEEeecCCceEEEe-ecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCC
Confidence 111223344555554332211000 0000 011223466777655554443322
Q ss_pred CcEEEEeCCCCcceeE-eecCceEEEEEcCCCCE--EEEeeCCCeEEEEEcccCC
Q psy9316 188 KTVRIWDARTQKSQII-ATKGENINITWAPNGNT--IAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 188 g~i~iwD~~t~~~~~~-~~~~~~~~v~~sp~g~~--la~gs~d~~i~~~d~~~~~ 239 (264)
..|.+||..+++.... .....+..++|+|||+. ++++..++.|++||+.++.
T Consensus 294 ~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 294 ENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred ceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 3588999999875322 23345678999999973 4667788999999987643
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.87 E-value=2.9e-07 Score=76.63 Aligned_cols=184 Identities=10% Similarity=-0.045 Sum_probs=108.8
Q ss_pred cccCCCCEEEEEECCCCCeEEEEE-----CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEE------
Q psy9316 47 YQAHGSKVHSVAWSCDGRRLASGS-----FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA------ 115 (264)
Q Consensus 47 ~~~h~~~V~~l~~s~~g~~l~s~s-----~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~------ 115 (264)
...+.+++..++++|||++++... .++.+.+||....+ . ...+..+.. ..+.|+|++. +++++
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~-~--~~~~~~~~~--~~~a~SpDG~-~l~va~~~~~~ 89 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS-I--LGHVNGGFL--PNPVAAHSGS-EFALASTSFSR 89 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCC-E--EEEEeCCCC--ccEEEcCCCC-EEEEEeecCCc
Confidence 346788999999999999987642 34567788765422 2 122333333 3688999664 45444
Q ss_pred ----eCCCcEEEEECCCCCcceE-----------------EEeecCCCcEEEEEeccCCCccc----eEEEeccccceee
Q psy9316 116 ----SGDKTVRIWDARTQKSQIM-----------------LASGSFDKSVAIFALDKKGDLNK----EVVYRGHTGSVDQ 170 (264)
Q Consensus 116 ----s~dg~i~vwd~~~~~~~~~-----------------~~~~~~d~~i~i~~~~~~~~~~~----~~~~~~h~~~i~~ 170 (264)
+.++.|.+||+.+++.... ++....+..+.++.....+.... ......+......
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTC 169 (373)
T ss_pred ccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEecccee
Confidence 3468899999988764221 11112222333333322211100 0011233344566
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeec------C--ceEEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 171 LCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK------G--ENINITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 171 i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~------~--~~~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
+.++|++...+++.+.||.+.+||..+......... . ....+.+++++.++ ..+.++.+.+|+...
T Consensus 170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 243 (373)
T d2madh_ 170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISA 243 (373)
T ss_pred EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE-EecCCceEEEEEcCC
Confidence 788888777888999999999999988764322111 1 12345566666555 445688888888664
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=1.3e-06 Score=69.42 Aligned_cols=194 Identities=12% Similarity=0.103 Sum_probs=108.6
Q ss_pred cccccccccCCCCEEEEEECCCCCeEEEEECC-CcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCC
Q psy9316 41 HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD-KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 119 (264)
Q Consensus 41 ~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d-g~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg 119 (264)
+...+.+..+...+...+|||||++||-...+ +.-.+|.....+.. ......+........|+|++..++.....++
T Consensus 28 G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~ 105 (269)
T d2hqsa1 28 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSKLAFALSKTG 105 (269)
T ss_dssp SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCCeeeEeeecCC
Confidence 33444555566778899999999999876543 33333433332222 1234456677788899997765555554455
Q ss_pred cEEEEECCCCCc---------------------ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCC
Q psy9316 120 TVRIWDARTQKS---------------------QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 178 (264)
Q Consensus 120 ~i~vwd~~~~~~---------------------~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~ 178 (264)
...++....... ...+.....++...++......... ..............|+|++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~spdg~ 183 (269)
T d2hqsa1 106 SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP--QRITWEGSQNQDADVSSDGK 183 (269)
T ss_dssp SCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC--EECCCSSSEEEEEEECTTSS
T ss_pred ccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc--eeeecccccccccccccccc
Confidence 443332221110 0122223334444444433322211 11223344556678998776
Q ss_pred CEEEEEeCCCcEEEE--eCCCCcceeEeecCceEEEEEcCCCCEEEEeeCC---CeEEEEEcccC
Q psy9316 179 DLLSTASGDKTVRIW--DARTQKSQIIATKGENINITWAPNGNTIAVGNKE---DLVTFIDVVKS 238 (264)
Q Consensus 179 ~~i~s~~~dg~i~iw--D~~t~~~~~~~~~~~~~~v~~sp~g~~la~gs~d---~~i~~~d~~~~ 238 (264)
.++......+...+| |..++...............|||||++|+..+.. ..++++++..+
T Consensus 184 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 184 FMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 248 (269)
T ss_dssp EEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred eeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 666666666666666 4444443333334455678999999999876643 35788887643
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.79 E-value=5.9e-06 Score=67.31 Aligned_cols=207 Identities=11% Similarity=0.131 Sum_probs=131.5
Q ss_pred EeecCCCeeEEEeecCceEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEeccc
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~ 96 (264)
.+-|.| .+.++...++.|..++.....+.+....+.+.+++|++||+.+++...++.+..++.................
T Consensus 34 Av~pdG-~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (302)
T d2p4oa1 34 ASAPDG-TIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDA 112 (302)
T ss_dssp EECTTS-CEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTC
T ss_pred EECCCC-CEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCc
Confidence 445555 3555556677787777766666777777889999999999998888888888888765432211111112334
Q ss_pred ccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc----------------------------eEEEeecCCCcEEEEE
Q psy9316 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ----------------------------IMLASGSFDKSVAIFA 148 (264)
Q Consensus 97 ~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~----------------------------~~~~~~~~d~~i~i~~ 148 (264)
.....+.+.+++ +++++-+.++.+..+|...+... .++.+....+.|..++
T Consensus 113 ~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~ 191 (302)
T d2p4oa1 113 IFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIP 191 (302)
T ss_dssp SCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred cccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEecc
Confidence 557788888754 66666677888888887654211 1334445556666666
Q ss_pred eccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeec---CceEEEEE---cCCCCEEE
Q psy9316 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK---GENINITW---APNGNTIA 222 (264)
Q Consensus 149 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~---~~~~~v~~---sp~g~~la 222 (264)
....+.......+. .......+++.+++ .++++...++.|..++...+........ ..+.+++| +||++.|.
T Consensus 192 ~~~~~~~~~~~~~~-~~~~pdgia~d~dG-~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Ly 269 (302)
T d2p4oa1 192 VDSTDKPGEPEIFV-EQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIY 269 (302)
T ss_dssp BCTTSCBCCCEEEE-ESCCCSSEEEBTTC-CEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred cccccccccccccc-CCCCCcceEECCCC-CEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEE
Confidence 55433322222221 22345678888754 6777777899999998876543222211 34678999 67888887
Q ss_pred EeeCC
Q psy9316 223 VGNKE 227 (264)
Q Consensus 223 ~gs~d 227 (264)
+++..
T Consensus 270 vtt~~ 274 (302)
T d2p4oa1 270 VVTNG 274 (302)
T ss_dssp EEECT
T ss_pred EECCC
Confidence 76654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.74 E-value=1.1e-06 Score=75.88 Aligned_cols=109 Identities=14% Similarity=0.187 Sum_probs=70.5
Q ss_pred CCCCceEeecCCCeeEEEeecCceEEecccccc--c-----cccccCCCCEEEEEECCCCCeEEEEEC---------CCc
Q psy9316 11 PKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHND--I-----KEYQAHGSKVHSVAWSCDGRRLASGSF---------DKS 74 (264)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~-----~~~~~h~~~V~~l~~s~~g~~l~s~s~---------dg~ 74 (264)
|++.+.++++.+ ++. . ..++.+..|+..+. . +.|..|...|.+..|+|||++|+.++. ++.
T Consensus 17 ~~~~~~~W~~d~-~~~-~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~ 93 (470)
T d2bgra1 17 LKLYSLRWISDH-EYL-Y-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (470)
T ss_dssp CCCCCCEECSSS-EEE-E-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccCCEeCCCC-EEE-E-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCce
Confidence 556667888766 432 2 45677777765332 1 356677788999999999999998753 567
Q ss_pred EEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCC
Q psy9316 75 VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128 (264)
Q Consensus 75 i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~ 128 (264)
+.+||+.... .. .+..+...+..+.|+|++. .++. ..++.+++|+..+
T Consensus 94 ~~l~d~~~~~-~~---~l~~~~~~~~~~~~SPDG~-~ia~-~~~~~l~~~~~~~ 141 (470)
T d2bgra1 94 YDIYDLNKRQ-LI---TEERIPNNTQWVTWSPVGH-KLAY-VWNNDIYVKIEPN 141 (470)
T ss_dssp EEEEETTTTE-EC---CSSCCCTTEEEEEECSSTT-CEEE-EETTEEEEESSTT
T ss_pred EEEEECCCCc-cc---ccccCCccccccccccCcc-eeeE-eecccceEEECCC
Confidence 8899986422 11 2345666677777777654 3433 3455666666544
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.67 E-value=2.3e-06 Score=71.91 Aligned_cols=178 Identities=11% Similarity=0.089 Sum_probs=103.7
Q ss_pred CEEEEEECCCCCeEEEEECC-CcEEEEEeccCCCCcccEEEe--cccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC
Q psy9316 53 KVHSVAWSCDGRRLASGSFD-KSVAIFALDKKGDLNKEVVYR--GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 129 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~d-g~i~v~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~ 129 (264)
-++++.|+|||++++++... ..|.+|+....+......... ........+.|+|++..+.++...+++|.+||++..
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence 47899999999999988653 468888776544332211111 223457889999977555566667999999998765
Q ss_pred CcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCc-----EEEEeCCCCcc-ee-
Q psy9316 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT-----VRIWDARTQKS-QI- 202 (264)
Q Consensus 130 ~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~-----i~iwD~~t~~~-~~- 202 (264)
+.......+. ..+..............+......+.++|++..++++...+.. |..|++..... ..
T Consensus 226 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~ 298 (365)
T d1jofa_ 226 THMPVYTHHS-------FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ 298 (365)
T ss_dssp TCCEEEEEEE-------EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE
T ss_pred CceEEEEeee-------eccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeE
Confidence 4332221110 1110000000000001122345568889876655555444433 77777654321 11
Q ss_pred -Ee-----ecCceEEEEEcC-CCCEEEEe-eCCCeEEEEEccc
Q psy9316 203 -IA-----TKGENINITWAP-NGNTIAVG-NKEDLVTFIDVVK 237 (264)
Q Consensus 203 -~~-----~~~~~~~v~~sp-~g~~la~g-s~d~~i~~~d~~~ 237 (264)
.. .......++++| +|++|+++ ..++.|.+|++..
T Consensus 299 ~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 299 LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred eEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 11 112456799998 89988665 6789999998764
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.63 E-value=4.1e-08 Score=85.27 Aligned_cols=148 Identities=14% Similarity=0.215 Sum_probs=95.1
Q ss_pred EEEECCCCCeEEEEECCCcEEEEEeccCCCCcc--cEEEecccccEEeEEEecCCCCeEEEEeC---------CCcEEEE
Q psy9316 56 SVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK--EVVYRGHTGSVDQLCWHATNPDLLSTASG---------DKTVRIW 124 (264)
Q Consensus 56 ~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~--~~~~~~h~~~v~~i~~~~~~~~~l~s~s~---------dg~i~vw 124 (264)
.+.|.++++++.. .|+.+.+|++........ ...+..|...|.++.|+|++ ++|+.++. ++.+.+|
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg-~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCC-CEEEEEECCcceeeeccCceEEEE
Confidence 4779999988764 578899999875332100 01133456779999999966 56655542 3455666
Q ss_pred ECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe
Q psy9316 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA 204 (264)
Q Consensus 125 d~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~ 204 (264)
|+.+++.. .+..|...+..+.|+|++ ..||.. .++.+++|+..++......
T Consensus 98 d~~~~~~~---------------------------~l~~~~~~~~~~~~SPDG-~~ia~~-~~~~l~~~~~~~g~~~~~t 148 (470)
T d2bgra1 98 DLNKRQLI---------------------------TEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYRIT 148 (470)
T ss_dssp ETTTTEEC---------------------------CSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEECC
T ss_pred ECCCCccc---------------------------ccccCCccccccccccCc-ceeeEe-ecccceEEECCCCceeeee
Confidence 66554311 124466778889999965 455554 5789999999887643221
Q ss_pred ec--------------------CceEEEEEcCCCCEEEEeeCCCe-EEEEEc
Q psy9316 205 TK--------------------GENINITWAPNGNTIAVGNKEDL-VTFIDV 235 (264)
Q Consensus 205 ~~--------------------~~~~~v~~sp~g~~la~gs~d~~-i~~~d~ 235 (264)
.. +....+.|||||++||+...|.. +..+++
T Consensus 149 ~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred eccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence 11 11234789999999999876544 444443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.31 E-value=4.6e-06 Score=68.38 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=81.4
Q ss_pred CCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCC
Q psy9316 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 129 (264)
Q Consensus 50 h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~ 129 (264)
+...+....+.+++..++.++.++.+.+|++..... ........+........+.|.+. ..++.+.|+...++.....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~d~~~~~~~~~~~ 270 (355)
T d2bbkh_ 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEAERADGWRPGGW-QQVAYHRALDRIYLLVDQR 270 (355)
T ss_dssp TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHHHHHTTEEECSS-SCEEEETTTTEEEEEEEEC
T ss_pred ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE-EEEeccCCcccceEeeeeeccce-EEEEEeCCCCeEEEEeccC
Confidence 344456667888888999999999999999875321 11111222222222222333222 2223344444333322111
Q ss_pred CcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCC-EEEEEeCCCcEEEEeCCCCcceeEe-ecC
Q psy9316 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD-LLSTASGDKTVRIWDARTQKSQIIA-TKG 207 (264)
Q Consensus 130 ~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~-~i~s~~~dg~i~iwD~~t~~~~~~~-~~~ 207 (264)
... +.......+.+|+........ .+ .+...+..+.|+|++.. ++++++.|+.|++||+++++..... ..+
T Consensus 271 ~~~---~~~~~~~~v~v~d~~t~~~~~---~~-~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G 343 (355)
T d2bbkh_ 271 DEW---RHKTASRFVVVLDAKTGERLA---KF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 343 (355)
T ss_dssp CTT---CTTSCEEEEEEEETTTCCEEE---EE-EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred Cce---eecCCCCeEEEEeCCCCcEEE---Ee-cCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcC
Confidence 000 001112234455543321111 11 12235778999997654 5677888999999999998853332 223
Q ss_pred -ceEEEEEcCC
Q psy9316 208 -ENINITWAPN 217 (264)
Q Consensus 208 -~~~~v~~sp~ 217 (264)
.+..+.+.++
T Consensus 344 ~~p~~i~~~d~ 354 (355)
T d2bbkh_ 344 HGPQVITTADM 354 (355)
T ss_dssp SSCCEEECCCC
T ss_pred CCccEEEeCCC
Confidence 2344544443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.18 E-value=2.1e-05 Score=65.30 Aligned_cols=191 Identities=12% Similarity=-0.076 Sum_probs=108.9
Q ss_pred cccccccccCCCCEEEEEECCCCCeEEEEE----------CCCcEEEEEeccCCCCcccEEEeccc-------ccEEeEE
Q psy9316 41 HNDIKEYQAHGSKVHSVAWSCDGRRLASGS----------FDKSVAIFALDKKGDLNKEVVYRGHT-------GSVDQLC 103 (264)
Q Consensus 41 ~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s----------~dg~i~v~~~~~~~~~~~~~~~~~h~-------~~v~~i~ 103 (264)
.+.+.+...+... .+.|+|||+.|+.++ .|+.|.+||..... .. ..+..+. .....+.
T Consensus 56 ~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~-~~--~~i~~p~~~~~~~g~~p~~~a 130 (368)
T d1mdah_ 56 GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-PI--ADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-EE--EEEEETTSCSCCBSCCTTSEE
T ss_pred CcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCc-Ee--eeecCCccceecccCCccceE
Confidence 3444555555443 588999999998865 36789999876422 11 1122111 1234678
Q ss_pred EecCCCCeEEEEeCCCcEEEEECCCCCcce----------------EEEeecCCCcEEEEEeccCCCccce---EEEecc
Q psy9316 104 WHATNPDLLSTASGDKTVRIWDARTQKSQI----------------MLASGSFDKSVAIFALDKKGDLNKE---VVYRGH 164 (264)
Q Consensus 104 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----------------~~~~~~~d~~i~i~~~~~~~~~~~~---~~~~~h 164 (264)
|+|++..++++...++.+.+||+.+.+... .++..+.|+.+..+++...+..... ..+..+
T Consensus 131 ~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (368)
T d1mdah_ 131 NCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ 210 (368)
T ss_dssp ECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred ECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccc
Confidence 999776555554568999999998765322 3456677888888887654432111 011122
Q ss_pred ccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--------------ecCceEEEEEcCCCCEEEEeeCC---
Q psy9316 165 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--------------TKGENINITWAPNGNTIAVGNKE--- 227 (264)
Q Consensus 165 ~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--------------~~~~~~~v~~sp~g~~la~gs~d--- 227 (264)
...+....+.+. ...+. ..++.++++|.......... .......++++|++..+.+...+
T Consensus 211 ~~~~~~~~~~~~-g~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~ 287 (368)
T d1mdah_ 211 NCSSQAAQANYP-GMLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR 287 (368)
T ss_dssp CBCSCCEEETTT-TEEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSS
T ss_pred ccceeecccccC-cEEEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCc
Confidence 223334455443 23333 33556666666654432211 11112347889999887665433
Q ss_pred ------CeEEEEEcccCC
Q psy9316 228 ------DLVTFIDVVKSL 239 (264)
Q Consensus 228 ------~~i~~~d~~~~~ 239 (264)
..+.+||...+.
T Consensus 288 ~~~~~~~~v~v~D~~t~~ 305 (368)
T d1mdah_ 288 SCLAAAENTSSVTASVGQ 305 (368)
T ss_dssp CTTSCEEEEEEEESSSCC
T ss_pred eeecCCceEEEEECCCCc
Confidence 248899976543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.11 E-value=3.1e-05 Score=66.35 Aligned_cols=180 Identities=13% Similarity=0.075 Sum_probs=95.6
Q ss_pred CCCCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEe-cccccEEeEEEecCCCC-eEEEEeCCCc------
Q psy9316 50 HGSKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYR-GHTGSVDQLCWHATNPD-LLSTASGDKT------ 120 (264)
Q Consensus 50 h~~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~-~l~s~s~dg~------ 120 (264)
|.-.+.+...+|||++|+... .+.+|.++|+.... . ..+.+ .+......+.|+|++.. +++..+.+..
T Consensus 70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k-~--~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg 146 (441)
T d1qnia2 70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMK-T--DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDG 146 (441)
T ss_dssp CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTE-E--EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCc-E--eeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcc
Confidence 444455566679999997765 67799999986422 1 12222 34567888999987654 4444443321
Q ss_pred -----------EEEEECCCCCcceEEEe--------ecCCCcEEEEEeccCCCc----------cceEEEeccccceeeE
Q psy9316 121 -----------VRIWDARTQKSQIMLAS--------GSFDKSVAIFALDKKGDL----------NKEVVYRGHTGSVDQL 171 (264)
Q Consensus 121 -----------i~vwd~~~~~~~~~~~~--------~~~d~~i~i~~~~~~~~~----------~~~~~~~~h~~~i~~i 171 (264)
+..+|..+.+....+.. .+.||.-........... ........ .-..+
T Consensus 147 ~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n---~p~~~ 223 (441)
T d1qnia2 147 TDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN---VERIA 223 (441)
T ss_dssp SCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE---HHHHH
T ss_pred cccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCC---ccceE
Confidence 23466655443222211 122333222221111000 00000000 00111
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCcce-eEeecCceEEEEEcCCCCEE-EEeeCCCeEEEEEccc
Q psy9316 172 CWHATNPDLLSTASGDKTVRIWDARTQKSQ-IIATKGENINITWAPNGNTI-AVGNKEDLVTFIDVVK 237 (264)
Q Consensus 172 ~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~-~~~~~~~~~~v~~sp~g~~l-a~gs~d~~i~~~d~~~ 237 (264)
.+.|++ .++. .+.++.+.+++....... .......+..++++|||+++ +++..++++.+||+.+
T Consensus 224 ~~~~dG-k~~~-v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k 289 (441)
T d1qnia2 224 AAVKAG-NFKT-IGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289 (441)
T ss_dssp HHHHTT-CCBC-CTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred EEecCC-CEEE-eCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence 223332 2322 345677777776654432 23334456789999999987 5678899999999876
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.98 E-value=0.00047 Score=55.55 Aligned_cols=176 Identities=12% Similarity=0.091 Sum_probs=105.1
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 132 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 132 (264)
.+..++++|||+++++...+++|..++. .+.. ..+......+.+++|.+++ +++++...++.+..++.......
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p--~g~~---~~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~~~~ 102 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITP--DGNQ---QIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGT 102 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT--TCCE---EEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSC
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeC--CCCE---EEEEcCCCCcceEEEcCCC-CeEEEecCCceEEEEEecccccc
Confidence 5788999999999999888898877753 3332 2234456678999999865 67777778888887776443211
Q ss_pred eE-E-----------EeecCCCcEE--------EEEeccCCCccceEEEe---------ccccceeeEEEcCCCCCEEEE
Q psy9316 133 IM-L-----------ASGSFDKSVA--------IFALDKKGDLNKEVVYR---------GHTGSVDQLCWHATNPDLLST 183 (264)
Q Consensus 133 ~~-~-----------~~~~~d~~i~--------i~~~~~~~~~~~~~~~~---------~h~~~i~~i~~~~~~~~~i~s 183 (264)
.. + ..-..++.+. +|.++..+......... ......+.+.+. +..++++
T Consensus 103 ~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~ 180 (302)
T d2p4oa1 103 VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVS 180 (302)
T ss_dssp EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEE
T ss_pred eeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeee
Confidence 10 0 1111222221 22222211111111100 111233455554 3456777
Q ss_pred EeCCCcEEEEeCCCCcc----eeEeecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 184 ASGDKTVRIWDARTQKS----QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 184 ~~~dg~i~iwD~~t~~~----~~~~~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
.+..+.|..+|+..... ...........++++++|+++++...++.|..++..
T Consensus 181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~ 237 (302)
T d2p4oa1 181 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 237 (302)
T ss_dssp ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred cCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence 78889999888875432 111223345579999999988888888988888754
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.90 E-value=0.00066 Score=53.09 Aligned_cols=221 Identities=10% Similarity=0.031 Sum_probs=102.1
Q ss_pred CceEeecC--CCeeEEEeecCceEEecccc-ccccccccCCCCEEEEEECCCCCeEEEEEC-CC---cEEEEEeccCCCC
Q psy9316 14 PEYKLLPS--GSQFHLVCKIDDYVKHFNTH-NDIKEYQAHGSKVHSVAWSCDGRRLASGSF-DK---SVAIFALDKKGDL 86 (264)
Q Consensus 14 ~~~~~~~~--~~~~~~~~~~d~~~~~~~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~-dg---~i~v~~~~~~~~~ 86 (264)
|+..+.|. |..+..+. ++.++..+.. ...+.+..+.+.+....|||||++|+-... ++ ...+|-+...+..
T Consensus 2 ~~~~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~ 79 (281)
T d1k32a2 2 PNLLLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE 79 (281)
T ss_dssp CCCCEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred CCcccCCCCCCCEEEEEe--CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence 55556677 77654432 4456655443 344556667778899999999999986542 22 2234433332211
Q ss_pred cccEE-----EecccccEEeEEEecCCCCeEEEEeCC-----CcEEEEECCCCCcce-----EEEeecCCCcEEEEEecc
Q psy9316 87 NKEVV-----YRGHTGSVDQLCWHATNPDLLSTASGD-----KTVRIWDARTQKSQI-----MLASGSFDKSVAIFALDK 151 (264)
Q Consensus 87 ~~~~~-----~~~h~~~v~~i~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~-----~~~~~~~d~~i~i~~~~~ 151 (264)
..... ............|+|++..++++...+ ..+...+.+...... .......++...++....
T Consensus 80 ~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (281)
T d1k32a2 80 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF 159 (281)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred eEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeecc
Confidence 11000 111223345677888664433332221 123344443321100 000011122222222111
Q ss_pred CCC---------ccc---------eEEEeccccceeeEEEcCCCCCEEEEEeC--CCcEEEEeCCCCcceeEeecCceEE
Q psy9316 152 KGD---------LNK---------EVVYRGHTGSVDQLCWHATNPDLLSTASG--DKTVRIWDARTQKSQIIATKGENIN 211 (264)
Q Consensus 152 ~~~---------~~~---------~~~~~~h~~~i~~i~~~~~~~~~i~s~~~--dg~i~iwD~~t~~~~~~~~~~~~~~ 211 (264)
... ... ...............+.+. .++..... ...|.++|+.++.............
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~ 237 (281)
T d1k32a2 160 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYP 237 (281)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCE
T ss_pred ccceeeeeccCCcceeeeeccccceeeccCCccccceeeeecc--ccceecccccccceEEEeCCCCceEEeecCCCccc
Confidence 100 000 0001111122222333331 23333333 3356677888776543332222233
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 212 ITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 212 v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
..|||||+.|+... ++-++++|+..+.
T Consensus 238 ~~~SpDG~~I~f~~-~~~l~~~d~~~g~ 264 (281)
T d1k32a2 238 RHLNTDGRRILFSK-GGSIYIFNPDTEK 264 (281)
T ss_dssp EEEEESSSCEEEEE-TTEEEEECTTTCC
T ss_pred ccCcCCCCEEEEEe-CCEEEEEECCCCC
Confidence 46999999988755 7889999986543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.89 E-value=0.0026 Score=51.53 Aligned_cols=181 Identities=13% Similarity=0.229 Sum_probs=102.5
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEE--eccc-ccEEeEEEecCCCCeEEEEeC------------
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY--RGHT-GSVDQLCWHATNPDLLSTASG------------ 117 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~--~~h~-~~v~~i~~~~~~~~~l~s~s~------------ 117 (264)
.-..+.|+++++.|+.+.....|..++.+. ........ .+.. ....++.+.+++ ++.++-..
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g--~~~~~~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~~~ 148 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDG--TFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTS--CEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTT
T ss_pred cceeEEEeCCCCEEEEEECCCeEEEEeCCC--cEEEEEeccccccccCCCcEEEECCCC-CEEEecCccCccccccccee
Confidence 356899999999888887767777777542 21110000 0111 124567777754 44443211
Q ss_pred ---CCcEEEEECCCCC----------------------cceEEEeecCCCcEEEEEeccCCCccceEEEe---c-cccce
Q psy9316 118 ---DKTVRIWDARTQK----------------------SQIMLASGSFDKSVAIFALDKKGDLNKEVVYR---G-HTGSV 168 (264)
Q Consensus 118 ---dg~i~vwd~~~~~----------------------~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~---~-h~~~i 168 (264)
+|.+..++.+... ...++++.+..+.|..|++...+.......+. . ....-
T Consensus 149 ~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~p 228 (314)
T d1pjxa_ 149 QEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA 228 (314)
T ss_dssp SSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred ccCCceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccc
Confidence 2234434332110 00133344455566666665444332211111 1 11223
Q ss_pred eeEEEcCCCCCEEEEEeCCCcEEEEeCCCCccee-Eeec-CceEEEEEcCCCCEE-EEeeCCCeEEEEEccc
Q psy9316 169 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATK-GENINITWAPNGNTI-AVGNKEDLVTFIDVVK 237 (264)
Q Consensus 169 ~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~-~~~~-~~~~~v~~sp~g~~l-a~gs~d~~i~~~d~~~ 237 (264)
..+++.++ +.++++....+.|.+||.+++.... ...+ ..+.+++|.|+++.| ++.+.++.|..+++..
T Consensus 229 dGiavD~~-GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 229 DGMDFDED-NNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEBTT-CCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eeeEEecC-CcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 45777764 4677777788999999998776433 3333 457889999999754 6667789999988754
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.87 E-value=0.0029 Score=49.51 Aligned_cols=155 Identities=10% Similarity=0.081 Sum_probs=97.0
Q ss_pred CCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc
Q psy9316 52 SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 131 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~ 131 (264)
....+++++++++++++-..+..+..++.. +.... .....-......+++.+.+ +++++...++.|..+|.+....
T Consensus 98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~--~~~~~-~~~~~~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~~~~~~ 173 (260)
T d1rwia_ 98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAG--SKTQT-VLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQ 173 (260)
T ss_dssp CSEEEEEECTTCCEEEEEGGGTEEEEECTT--CSSCE-ECCCCSCCSCCEEEECTTC-CEEEEEGGGTEEEEECTTTCCE
T ss_pred eecccccccccceeEeeccccccccccccc--cceee-eeeecccCCcceeeecCCC-CEeeecccccccccccccccee
Confidence 457899999999887766555666666433 22111 1111112334677887754 5666667778888888764321
Q ss_pred ceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeec--Cce
Q psy9316 132 QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK--GEN 209 (264)
Q Consensus 132 ~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~--~~~ 209 (264)
. .+ . ......-..|++.+. +.++++....+.|..++............ ..+
T Consensus 174 ~-~~------------~-------------~~~~~~p~gi~~d~~-g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P 226 (260)
T d1rwia_ 174 V-VL------------P-------------FTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTP 226 (260)
T ss_dssp E-EC------------C-------------CSSCCSEEEEEECTT-CCEEEEETTTTEEEEECTTCSCCEECCCCSCCCE
T ss_pred e-ee------------e-------------ccccCCCccceeeee-eeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCe
Confidence 1 00 0 011123356778764 46887777788899888776544332222 357
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 210 INITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 210 ~~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
..++++++|+.+++-..++.|..++..+
T Consensus 227 ~~i~~d~~g~l~vad~~~~rI~~i~~~~ 254 (260)
T d1rwia_ 227 LAVAVDSDRTVYVADRGNDRVVKLTSLE 254 (260)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred EEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence 7899999999888888889888887654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=0.0029 Score=49.08 Aligned_cols=195 Identities=14% Similarity=0.118 Sum_probs=98.8
Q ss_pred EeecCCCeeEEEeecCceEEec--cc-cccccccccCCCCEEEEEECCCCCeEEEEEC-CCcEEEEEeccCCCCcccEEE
Q psy9316 17 KLLPSGSQFHLVCKIDDYVKHF--NT-HNDIKEYQAHGSKVHSVAWSCDGRRLASGSF-DKSVAIFALDKKGDLNKEVVY 92 (264)
Q Consensus 17 ~~~~~~~~~~~~~~~d~~~~~~--~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~-dg~i~v~~~~~~~~~~~~~~~ 92 (264)
++.|.|..+..+....+....+ .. ....+.+..+.+......|+|+|+.|+.... ++...++...... ... ...
T Consensus 45 ~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~-~~~-~~~ 122 (269)
T d2hqsa1 45 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQI-RQV 122 (269)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE-EEC
T ss_pred EECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeeccccc-ccc-eee
Confidence 4777777665443333322222 22 2233445567788899999999999987664 3333333222211 111 111
Q ss_pred ecccccEEeEEEecCCCCeEEEEeCCCcEEE--EECCCCCcce-------------------EEEeecCCCcEEEEEecc
Q psy9316 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRI--WDARTQKSQI-------------------MLASGSFDKSVAIFALDK 151 (264)
Q Consensus 93 ~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~v--wd~~~~~~~~-------------------~~~~~~~d~~i~i~~~~~ 151 (264)
...........+.+.+...+++...+|...+ .++....... ++.....++...++....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~ 202 (269)
T d2hqsa1 123 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 202 (269)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred eeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeec
Confidence 1223333344556555555556566665444 4544332110 122222233334444333
Q ss_pred CCCccceEEEeccccceeeEEEcCCCCCEEEEEe--CCCcEEEEeCCCCcceeE-eecCceEEEEEcC
Q psy9316 152 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS--GDKTVRIWDARTQKSQII-ATKGENINITWAP 216 (264)
Q Consensus 152 ~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~--~dg~i~iwD~~t~~~~~~-~~~~~~~~v~~sp 216 (264)
.... .....+........|+|++..++.+.. ....++++|+..+..... ...+.+...+|||
T Consensus 203 ~~~~---~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 203 ATGG---VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 267 (269)
T ss_dssp TTCC---EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred cccc---ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence 2221 112233445567789997655544433 345688899988765333 2344566789998
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.80 E-value=0.0003 Score=58.50 Aligned_cols=175 Identities=11% Similarity=0.115 Sum_probs=95.8
Q ss_pred CCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCe-EEEEe-CCCcEEEEECC
Q psy9316 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDL-LSTAS-GDKTVRIWDAR 127 (264)
Q Consensus 50 h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~-l~s~s-~dg~i~vwd~~ 127 (264)
....+..|+|+|+++.|+++.. +.+..|.++..+........ ........+.+++++... +++.. ..+.+..+.+.
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~-~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~ 115 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASH-PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEE-ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeee-cCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence 3445667999999999998765 56888887754332211111 111223344555544322 32222 24555554443
Q ss_pred CCCcceEEEeecCCCcEEEEEeccCCCccceE--EEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCc-ceeE-
Q psy9316 128 TQKSQIMLASGSFDKSVAIFALDKKGDLNKEV--VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-SQII- 203 (264)
Q Consensus 128 ~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~--~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~-~~~~- 203 (264)
.. ++...++.+...+...... ..++....+..+.|+|++..++++......|.+|+..... ....
T Consensus 116 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~ 184 (365)
T d1jofa_ 116 KF-----------AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG 184 (365)
T ss_dssp SS-----------CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred CC-----------CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc
Confidence 21 1222233332222211110 1122233577899999776666665556788888765432 2111
Q ss_pred --e-e--cCceEEEEEcCCCCEE-EEeeCCCeEEEEEccc
Q psy9316 204 --A-T--KGENINITWAPNGNTI-AVGNKEDLVTFIDVVK 237 (264)
Q Consensus 204 --~-~--~~~~~~v~~sp~g~~l-a~gs~d~~i~~~d~~~ 237 (264)
. . ...+..++|+|+|+++ ++...++.|.+|+...
T Consensus 185 ~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 185 SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred ceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence 1 1 1246679999999988 5556789999999754
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.0023 Score=54.90 Aligned_cols=116 Identities=9% Similarity=0.076 Sum_probs=68.2
Q ss_pred CCCCceEeecCCCeeEEEeecCceEEeccccccccc--cc---cCCCCEEEEEECCCCCeEEEEE---------CCCcEE
Q psy9316 11 PKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKE--YQ---AHGSKVHSVAWSCDGRRLASGS---------FDKSVA 76 (264)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~---~h~~~V~~l~~s~~g~~l~s~s---------~dg~i~ 76 (264)
+++++.++++.+ ++. .-.-++.+..++....... +. ...-.+....|+||+++|+.+. ..+.+.
T Consensus 17 ~~~~~~~W~~~~-~~~-~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~ 94 (465)
T d1xfda1 17 IHDPEAKWISDT-EFI-YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (465)
T ss_dssp CCCCCCCBSSSS-CBC-CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred cCCCCCEEeCCC-cEE-EEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEE
Confidence 455677888765 332 2334666777766433211 11 1223567788999999988764 356788
Q ss_pred EEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCc
Q psy9316 77 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 131 (264)
Q Consensus 77 v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~ 131 (264)
++|+... ..............+....|+|++..++.+ .++.+.+.+...+..
T Consensus 95 i~d~~~~-~~~~l~~~~~~~~~l~~~~wSPDG~~iafv--~~~nl~~~~~~~~~~ 146 (465)
T d1xfda1 95 LSKIPHG-DPQSLDPPEVSNAKLQYAGWGPKGQQLIFI--FENNIYYCAHVGKQA 146 (465)
T ss_dssp EEESSSC-CCEECCCTTCCSCCCSBCCBCSSTTCEEEE--ETTEEEEESSSSSCC
T ss_pred EEEccCC-ceeeccCccCCccccceeeeccCCceEEEE--ecceEEEEecCCCce
Confidence 8888643 222111111223445567899988665543 367788888765543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.61 E-value=0.00012 Score=62.72 Aligned_cols=200 Identities=9% Similarity=-0.019 Sum_probs=107.1
Q ss_pred EeecCceEEecccc--ccccccc-cCCCCEEEEEECCCCC--eEEEEECCCc-----------------EEEEEeccCCC
Q psy9316 28 VCKIDDYVKHFNTH--NDIKEYQ-AHGSKVHSVAWSCDGR--RLASGSFDKS-----------------VAIFALDKKGD 85 (264)
Q Consensus 28 ~~~~d~~~~~~~~~--~~~~~~~-~h~~~V~~l~~s~~g~--~l~s~s~dg~-----------------i~v~~~~~~~~ 85 (264)
.-..++.+..++.. +..+... .+...+..++|+|+|+ +++..+.+.. +..+|..+
T Consensus 89 ~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t--- 165 (441)
T d1qnia2 89 NDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET--- 165 (441)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT---
T ss_pred EcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc---
Confidence 33445556655543 2233332 4567899999999998 4544444321 12233322
Q ss_pred CcccEEEecccccEEeEEEecCCCCeEEEEeCC-CcEEEEECCCCCcceEE-----------------EeecCCCcEEEE
Q psy9316 86 LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-KTVRIWDARTQKSQIML-----------------ASGSFDKSVAIF 147 (264)
Q Consensus 86 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~-----------------~~~~~d~~i~i~ 147 (264)
........ -......+.++|++ .++++++.+ ..+..+|..+......+ ...+.++.+.++
T Consensus 166 ~~v~~qI~-v~~~p~~v~~spdG-k~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd 243 (441)
T d1qnia2 166 MDVAWQVI-VDGNLDNTDADYTG-KYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVD 243 (441)
T ss_dssp CSEEEEEE-ESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred ceeeEEEe-cCCCccceEECCCC-CEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEE
Confidence 11111111 12346778888866 455555543 33333333222211111 111223444444
Q ss_pred EeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc----------eeEeecC---ceEEEEE
Q psy9316 148 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS----------QIIATKG---ENINITW 214 (264)
Q Consensus 148 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~----------~~~~~~~---~~~~v~~ 214 (264)
........ ........ -..+..+|++..+++++..++++.+||+++... ....... .+.-.+|
T Consensus 244 ~~~~~~v~---~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f 319 (441)
T d1qnia2 244 GRGESEFT---RYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF 319 (441)
T ss_dssp CSSSCSSE---EEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred cccCCceE---EEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccccee
Confidence 32211111 11222222 345788898877788999999999999875321 1111111 1344689
Q ss_pred cCCCCEEEEeeCCCeEEEEEcc
Q psy9316 215 APNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 215 sp~g~~la~gs~d~~i~~~d~~ 236 (264)
+++|+.+.+..-|..|.-|++.
T Consensus 320 d~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 320 DGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp CSSSEEEEEETTTTEEEEEEHH
T ss_pred cCCceEEEcccccceEEEeccc
Confidence 9999999999999999999975
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.60 E-value=0.0055 Score=48.39 Aligned_cols=156 Identities=12% Similarity=0.164 Sum_probs=94.0
Q ss_pred CCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCC
Q psy9316 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130 (264)
Q Consensus 51 ~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 130 (264)
-.....++++++|+.+++....+.+.+++. .+..........+......+++.+.+ +++++....+.|++||....
T Consensus 113 ~~~p~~~avd~~G~i~v~~~~~~~~~~~~~--~g~~~~~~g~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~G~- 188 (279)
T d1q7fa_ 113 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQ--NGNVLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQ- 188 (279)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECT--TSCEEEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCC-
T ss_pred ccccceeccccCCcEEEEeeccceeeEecc--CCceeecccccccccccceeeeccce-eEEeeeccccceeeeecCCc-
Confidence 345678889999988877766677777653 23322111122345566777777644 56666777888888886532
Q ss_pred cceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeC-CCcEEEEeCCCCcceeEeec---
Q psy9316 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG-DKTVRIWDARTQKSQIIATK--- 206 (264)
Q Consensus 131 ~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~-dg~i~iwD~~t~~~~~~~~~--- 206 (264)
.. +.+... +....-..|++.+.+ .++++-.. ++.|.+||....-.......
T Consensus 189 ~~--------------~~~g~~----------g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~ 243 (279)
T d1q7fa_ 189 YL--------------RQIGGE----------GITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQLISALESKVKH 243 (279)
T ss_dssp EE--------------EEESCT----------TTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSCEEEEEEESSCC
T ss_pred ee--------------eeeccc----------ccccCCcccccccCC-eEEEEECCCCcEEEEECCCCCEEEEEeCCCCC
Confidence 11 111111 112234567888765 56666443 45699998654322222222
Q ss_pred CceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 207 GENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 207 ~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
..+..|++.|+|.+++ ++.++.|++|.-.
T Consensus 244 ~~p~~vav~~dG~l~V-~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 244 AQCFDVALMDDGSVVL-ASKDYRLYIYRYV 272 (279)
T ss_dssp SCEEEEEEETTTEEEE-EETTTEEEEEECS
T ss_pred CCEeEEEEeCCCcEEE-EeCCCeEEEEEee
Confidence 3477899999997554 5679999999854
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.28 E-value=0.023 Score=44.00 Aligned_cols=153 Identities=12% Similarity=0.134 Sum_probs=89.3
Q ss_pred CEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCCCCcc
Q psy9316 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 132 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 132 (264)
....++++++++..++...++.+++++- +.... ...........++++.+.+ +++++-..+..+..++..... .
T Consensus 58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~---~~~~~-~~~~~~~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~-~ 131 (260)
T d1rwia_ 58 QPQGLAVDGAGTVYVTDFNNRVVTLAAG---SNNQT-VLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKT-Q 131 (260)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTT---CSCCE-ECCCCSCCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSS-C
T ss_pred CceEEEEcCCCCEEEeeeeeceeeeeee---cccee-eeeeeeeeecccccccccc-eeEeeccccccccccccccce-e
Confidence 3567899999987777655555555421 21111 1111122345677777644 455444344444444443211 0
Q ss_pred eEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe--ecCceE
Q psy9316 133 IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA--TKGENI 210 (264)
Q Consensus 133 ~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~--~~~~~~ 210 (264)
..+. ..+ ......+++.|. +.++++...++.|..+|.......... ....+.
T Consensus 132 ~~~~------------------------~~~-~~~p~~i~~~~~-g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~ 185 (260)
T d1rwia_ 132 TVLP------------------------FTG-LNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPW 185 (260)
T ss_dssp EECC------------------------CCS-CCSCCEEEECTT-CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEE
T ss_pred eeee------------------------ecc-cCCcceeeecCC-CCEeeeccccccccccccccceeeeeeccccCCCc
Confidence 0000 000 112345777774 467777788889999998876533222 234577
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEEccc
Q psy9316 211 NITWAPNGNTIAVGNKEDLVTFIDVVK 237 (264)
Q Consensus 211 ~v~~sp~g~~la~gs~d~~i~~~d~~~ 237 (264)
.++++++|+++++...++.|..++...
T Consensus 186 gi~~d~~g~l~vsd~~~~~i~~~~~~~ 212 (260)
T d1rwia_ 186 GIAVDEAGTVYVTEHNTNQVVKLLAGS 212 (260)
T ss_dssp EEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred cceeeeeeeeeeeecCCCEEEEEeCCC
Confidence 899999999999988899988887543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.07 E-value=0.043 Score=42.92 Aligned_cols=179 Identities=12% Similarity=0.150 Sum_probs=95.9
Q ss_pred EEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEE----ecccccEEeEEEecCCCCeEEE-EeCCCcEEEEECCC
Q psy9316 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY----RGHTGSVDQLCWHATNPDLLST-ASGDKTVRIWDART 128 (264)
Q Consensus 54 V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~~~~~l~s-~s~dg~i~vwd~~~ 128 (264)
...++++++|+.+++-..+..|++|+.+ +........ .+.......+.+.......+++ .+.++.|.+++...
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~--G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 102 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 102 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeCC--CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence 5789999999977776677889998743 322111000 0111123344444433333332 23355666665432
Q ss_pred CCc---------ceEEEeecCCCcEEEEEe--------ccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEE
Q psy9316 129 QKS---------QIMLASGSFDKSVAIFAL--------DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 191 (264)
Q Consensus 129 ~~~---------~~~~~~~~~d~~i~i~~~--------~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~ 191 (264)
... ...-++...++.+.+.+. +.++......-...+......+++.+. +.++++....+.|+
T Consensus 103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~-g~i~v~d~~~~~V~ 181 (279)
T d1q7fa_ 103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK-QEIFISDNRAHCVK 181 (279)
T ss_dssp CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSS-SEEEEEEGGGTEEE
T ss_pred cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccc-eeEEeeecccccee
Confidence 211 011122233444444432 222222111111234445667777764 46777788889999
Q ss_pred EEeCCCCcceeEeec---CceEEEEEcCCCCEEEEee-CCCeEEEEEc
Q psy9316 192 IWDARTQKSQIIATK---GENINITWAPNGNTIAVGN-KEDLVTFIDV 235 (264)
Q Consensus 192 iwD~~t~~~~~~~~~---~~~~~v~~sp~g~~la~gs-~d~~i~~~d~ 235 (264)
+||............ ..+..|++.|+|+.+++-+ .+..|.+|+.
T Consensus 182 ~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~ 229 (279)
T d1q7fa_ 182 VFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 229 (279)
T ss_dssp EEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred eeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC
Confidence 999876533222222 2467899999999877754 3557899884
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.06 E-value=0.05 Score=43.54 Aligned_cols=179 Identities=7% Similarity=-0.022 Sum_probs=102.0
Q ss_pred CCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeC----CCcEEEEECC
Q psy9316 52 SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG----DKTVRIWDAR 127 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~----dg~i~vwd~~ 127 (264)
-.+..+.|+++|+..++-..++.|..|+.+. ... .............+++++++ +++++... .+.+...|..
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g--~~~-~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~ 115 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPET--KEI-KRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATEN 115 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTT--CCE-EEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTT
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCC--CeE-EEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCC
Confidence 3467899999999777766788888776432 211 12223344567788998855 55554332 2234444443
Q ss_pred CCCcceE-----------EEeecCCCcEEEEEe--------------ccCCCccceEEEeccccceeeEEEcCCCCCEEE
Q psy9316 128 TQKSQIM-----------LASGSFDKSVAIFAL--------------DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 182 (264)
Q Consensus 128 ~~~~~~~-----------~~~~~~d~~i~i~~~--------------~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~ 182 (264)
....... -+....+|.+.+=+. +.++.... ........-+.|+|+|++..+++
T Consensus 116 ~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~--~~~~~~~~pnGia~s~dg~~lyv 193 (319)
T d2dg1a1 116 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT--PIIQNISVANGIALSTDEKVLWV 193 (319)
T ss_dssp SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE--EEEEEESSEEEEEECTTSSEEEE
T ss_pred CceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeE--EEeeccceeeeeeeccccceEEE
Confidence 3221111 112234454443332 22111111 11111123356899997766777
Q ss_pred EEeCCCcEEEEeCCCCcc--eeE-----ee---cCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 183 TASGDKTVRIWDARTQKS--QII-----AT---KGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 183 s~~~dg~i~iwD~~t~~~--~~~-----~~---~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
+-+..+.|..||+...-. ... .. ...+-.+++.++|+++++...++.|..||..
T Consensus 194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~ 257 (319)
T d2dg1a1 194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 257 (319)
T ss_dssp EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence 778889999998864321 111 01 1224569999999999888899999999954
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.00084 Score=57.74 Aligned_cols=146 Identities=10% Similarity=0.135 Sum_probs=79.6
Q ss_pred EECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEecc---cccEEeEEEecCCCCeEEEEe---------CCCcEEEEE
Q psy9316 58 AWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH---TGSVDQLCWHATNPDLLSTAS---------GDKTVRIWD 125 (264)
Q Consensus 58 ~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~h---~~~v~~i~~~~~~~~~l~s~s---------~dg~i~vwd 125 (264)
.|.+++.++.. ..+|.|.+|++..... . ..+... ...+....|+|++. .++... ..+.+.++|
T Consensus 23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~--~-~l~~~~~~~~~~~~~~~~SpD~~-~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 23 KWISDTEFIYR-EQKGTVRLWNVETNTS--T-VLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCC--E-EEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCCSSSCCCSEEEEEE
T ss_pred EEeCCCcEEEE-eCCCcEEEEECCCCCE--E-EEEcCccccccccceeEECCCCC-eEEEEEcccceeEeeccccEEEEE
Confidence 58888877654 4678899998865332 1 122221 23456677888664 444332 223444555
Q ss_pred CCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEee
Q psy9316 126 ARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT 205 (264)
Q Consensus 126 ~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~ 205 (264)
+.++.... ..........+....|+|++..+.. . .++.|.+.+..++.......
T Consensus 98 ~~~~~~~~------------------------l~~~~~~~~~l~~~~wSPDG~~iaf-v-~~~nl~~~~~~~~~~~~lt~ 151 (465)
T d1xfda1 98 IPHGDPQS------------------------LDPPEVSNAKLQYAGWGPKGQQLIF-I-FENNIYYCAHVGKQAIRVVS 151 (465)
T ss_dssp SSSCCCEE------------------------CCCTTCCSCCCSBCCBCSSTTCEEE-E-ETTEEEEESSSSSCCEEEEC
T ss_pred ccCCceee------------------------ccCccCCccccceeeeccCCceEEE-E-ecceEEEEecCCCceEEEec
Confidence 54432110 0000111234556789997665533 3 37788888887665422222
Q ss_pred cC---c-----------------eEEEEEcCCCCEEEEeeCC-CeEEEEE
Q psy9316 206 KG---E-----------------NINITWAPNGNTIAVGNKE-DLVTFID 234 (264)
Q Consensus 206 ~~---~-----------------~~~v~~sp~g~~la~gs~d-~~i~~~d 234 (264)
.+ . ..++-|||||++||....| ..+..+.
T Consensus 152 ~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~ 201 (465)
T d1xfda1 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIME 201 (465)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred ccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceee
Confidence 11 1 1357799999999998633 3344443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=96.74 E-value=0.029 Score=44.99 Aligned_cols=117 Identities=13% Similarity=0.236 Sum_probs=71.9
Q ss_pred EEEEEECCCCC----eEEE-EECCCcEEEEEeccCCCCcccEEEe----cccccEEeEEEecCCCCeEEEEeCCCcEEEE
Q psy9316 54 VHSVAWSCDGR----RLAS-GSFDKSVAIFALDKKGDLNKEVVYR----GHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124 (264)
Q Consensus 54 V~~l~~s~~g~----~l~s-~s~dg~i~v~~~~~~~~~~~~~~~~----~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vw 124 (264)
-+.++|+|+++ .|+. -+..+.|..|+++..+.......+. .+....-.+++.+++ ++.++....+.|.+|
T Consensus 174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G-nlyVa~~~~g~I~~~ 252 (314)
T d1pjxa_ 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVF 252 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEE
T ss_pred eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC-cEEEEEcCCCEEEEE
Confidence 35788888765 4444 4567888888877554332211111 112234567777654 566666667888888
Q ss_pred ECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q psy9316 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197 (264)
Q Consensus 125 d~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t 197 (264)
|.+.++.... ..........++|.|+...++++.+..|+|.-+|+..
T Consensus 253 dp~~g~~~~~--------------------------i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 253 GPDGGQPKMR--------------------------IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CTTCBSCSEE--------------------------EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eCCCCEEEEE--------------------------EECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 8765432211 1112235677899886656888888889998888753
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.37 E-value=0.41 Score=36.89 Aligned_cols=185 Identities=12% Similarity=0.122 Sum_probs=103.9
Q ss_pred cCCCCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECC
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 127 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~ 127 (264)
.+...+.+|+|++..++|+-+. .++.|...+++. ... ..+...-...+.+++++..++++..+-...+.|.+.+++
T Consensus 33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g--~~~-~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d 109 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG--GEP-TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD 109 (263)
T ss_dssp EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS--CCC-EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEccc--CCc-EEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecC
Confidence 3444578899999888887764 456777777653 222 222333334577888876565555555567889888887
Q ss_pred CCCcceE----------EEeecCCC----------cEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCC
Q psy9316 128 TQKSQIM----------LASGSFDK----------SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD 187 (264)
Q Consensus 128 ~~~~~~~----------~~~~~~d~----------~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~d 187 (264)
......+ ++.-...+ ...|+..+.++..... .....-..-..|++.+.+..+..+-...
T Consensus 110 g~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~-i~~~~~~~P~glaiD~~~~~lYw~d~~~ 188 (263)
T d1npea_ 110 GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI-LAQDNLGLPNGLTFDAFSSQLCWVDAGT 188 (263)
T ss_dssp SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE-EECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred CceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee-eeeecccccceEEEeecCcEEEEEeCCC
Confidence 5432111 11111111 1223333333322211 1111223345788877665566666677
Q ss_pred CcEEEEeCCCCcceeEe-ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcccC
Q psy9316 188 KTVRIWDARTQKSQIIA-TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238 (264)
Q Consensus 188 g~i~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~ 238 (264)
+.|...|+......... ....+.++++. ++..+.+-..++.|...|...+
T Consensus 189 ~~I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g 239 (263)
T d1npea_ 189 HRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS 239 (263)
T ss_dssp TEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred CEEEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEEEECCCCEEEEEECCCC
Confidence 88988888776543222 23456677765 3444455556788888887653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.20 E-value=0.1 Score=39.70 Aligned_cols=62 Identities=10% Similarity=0.140 Sum_probs=37.2
Q ss_pred cccceeeEEEcCCCCCEEEEEeCCC-----cEEEEeCCCCcceeEeec--------CceEEEEEcCCCCEEEEee
Q psy9316 164 HTGSVDQLCWHATNPDLLSTASGDK-----TVRIWDARTQKSQIIATK--------GENINITWAPNGNTIAVGN 225 (264)
Q Consensus 164 h~~~i~~i~~~~~~~~~i~s~~~dg-----~i~iwD~~t~~~~~~~~~--------~~~~~v~~sp~g~~la~gs 225 (264)
+...+....|+|++..+..+...++ .|.+++..+++....... .....+.|+|+|+.|+...
T Consensus 39 ~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 39 NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence 3445677889997654443433222 377778877764322111 1234678999999998753
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.56 E-value=0.87 Score=36.47 Aligned_cols=47 Identities=9% Similarity=0.061 Sum_probs=30.5
Q ss_pred EEEeCCCCcceeEe-ecCceEEEEEcCCCCEEEEe-eCCCeEEEEEccc
Q psy9316 191 RIWDARTQKSQIIA-TKGENINITWAPNGNTIAVG-NKEDLVTFIDVVK 237 (264)
Q Consensus 191 ~iwD~~t~~~~~~~-~~~~~~~v~~sp~g~~la~g-s~d~~i~~~d~~~ 237 (264)
.+|....+...... .....+.|+++||+++|.++ +..+.|+.|++..
T Consensus 189 ~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~ 237 (340)
T d1v04a_ 189 FVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 237 (340)
T ss_dssp EEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred eEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence 34433344333322 23457889999999887555 6678899999764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=93.74 E-value=1.2 Score=34.97 Aligned_cols=208 Identities=14% Similarity=0.198 Sum_probs=106.9
Q ss_pred eEEEeecCceEEeccccc--cccccccCCCCEEEEEECCCCCeEEEEECC--CcEEEEEeccCCCCcccEEEe--ccccc
Q psy9316 25 FHLVCKIDDYVKHFNTHN--DIKEYQAHGSKVHSVAWSCDGRRLASGSFD--KSVAIFALDKKGDLNKEVVYR--GHTGS 98 (264)
Q Consensus 25 ~~~~~~~d~~~~~~~~~~--~~~~~~~h~~~V~~l~~s~~g~~l~s~s~d--g~i~v~~~~~~~~~~~~~~~~--~h~~~ 98 (264)
+..+-...+.|..++... ....+.........|++++||+.+++...+ ....++.++..+.... .... .-...
T Consensus 53 Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~ 131 (319)
T d2dg1a1 53 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ-DIIEDLSTAYC 131 (319)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE-EEECSSSSCCC
T ss_pred EEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee-eeccCCCcccC
Confidence 433433455555554422 233344455678899999999887765432 3344554443322111 1111 11233
Q ss_pred EEeEEEecCCCCeEEEEeC------CCcEEEEECCCCCc-------------------ceEEEeecCCCcEEEEEeccCC
Q psy9316 99 VDQLCWHATNPDLLSTASG------DKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFALDKKG 153 (264)
Q Consensus 99 v~~i~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~-------------------~~~~~~~~~d~~i~i~~~~~~~ 153 (264)
..++.+.+++ ++.++... .+.+..++.+.... ..++++.+..+.|..|+++..+
T Consensus 132 ~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g 210 (319)
T d2dg1a1 132 IDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDG 210 (319)
T ss_dssp EEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CcceeEEecc-ceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCC
Confidence 6677787755 44443221 12244444433221 1133444445566666665443
Q ss_pred CccceEE-----EeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeecC-------ceEEEEEcCCCCEE
Q psy9316 154 DLNKEVV-----YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKG-------ENINITWAPNGNTI 221 (264)
Q Consensus 154 ~~~~~~~-----~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~~-------~~~~v~~sp~g~~l 221 (264)
....... .......-..+++.++ +.+.++....+.|.+||...+.......+. .+.+++|.|+++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~PdGl~vD~~-G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~ 289 (319)
T d2dg1a1 211 VTIQPFGATIPYYFTGHEGPDSCCIDSD-DNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQL 289 (319)
T ss_dssp SSEEEEEEEEEEECCSSSEEEEEEEBTT-CCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEE
T ss_pred ceeccccceeeeccCCccceeeeeEcCC-CCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEE
Confidence 3221110 0011112345777764 467778888999999997644333333222 35689999988877
Q ss_pred EEeeCC------CeEEEEEc
Q psy9316 222 AVGNKE------DLVTFIDV 235 (264)
Q Consensus 222 a~gs~d------~~i~~~d~ 235 (264)
.+.+.+ +.++..++
T Consensus 290 ~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 290 IICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp EEEEECGGGTCCEEEEEEEC
T ss_pred EEEcCCCCcCCceeEEEEeC
Confidence 665533 45666654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.65 E-value=1.2 Score=34.63 Aligned_cols=149 Identities=10% Similarity=0.137 Sum_probs=85.2
Q ss_pred CEEEEEECCCCCeEEEEECC----CcEEEEEeccCCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEECCC
Q psy9316 53 KVHSVAWSCDGRRLASGSFD----KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128 (264)
Q Consensus 53 ~V~~l~~s~~g~~l~s~s~d----g~i~v~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~~~ 128 (264)
.++++.+.|+|++.++...+ +.-.+|.+.. +... .... .-.....++|++++..++++-+..+.|..++++.
T Consensus 104 ~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~-g~~~--~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~ 179 (295)
T d2ghsa1 104 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-GKVT--KLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA 179 (295)
T ss_dssp EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-TEEE--EEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred cceeeEECCCCCEEEEeccccccccceeEeeecC-CcEE--EEee-ccCCcceeeecCCCceEEEeecccceeeEeeecc
Confidence 57889999999877664322 2334554432 2211 1122 2234567888887766667777788888888754
Q ss_pred CCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEeec-C
Q psy9316 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK-G 207 (264)
Q Consensus 129 ~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~~~-~ 207 (264)
..... .+...++. ...+-......++.... +.+.++.-..+.|..||...+.......+ .
T Consensus 180 ~~~~~-------~~~~~~~~-----------~~~~~~g~pdG~~vD~~-GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~ 240 (295)
T d2ghsa1 180 RTGLP-------TGKAEVFI-----------DSTGIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDTDGNHIARYEVPGK 240 (295)
T ss_dssp TTCCB-------SSCCEEEE-----------ECTTSSSEEEEEEECTT-SCEEEEEETTTEEEEECTTCCEEEEEECSCS
T ss_pred ccccc-------ccceEEEe-----------ccCcccccccceEEcCC-CCEEeeeeCCCceEEecCCCcEeeEecCCCC
Confidence 32110 00011110 01111233456677654 46777666788999999876554444444 4
Q ss_pred ceEEEEEc-CCCCEEEEe
Q psy9316 208 ENINITWA-PNGNTIAVG 224 (264)
Q Consensus 208 ~~~~v~~s-p~g~~la~g 224 (264)
.+++++|. |+.+.|.+-
T Consensus 241 ~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 241 QTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp BEEEEEEESTTSCEEEEE
T ss_pred ceEEEEEeCCCCCEEEEE
Confidence 57899995 777766443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.93 E-value=1.5 Score=33.91 Aligned_cols=177 Identities=13% Similarity=0.130 Sum_probs=93.2
Q ss_pred ceEEeccccccccccccCCCCEEEEEECCCCCeEEEEECCCcEEEEEeccCCCCcccEEEec--ccccEEeEEEecCCCC
Q psy9316 33 DYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG--HTGSVDQLCWHATNPD 110 (264)
Q Consensus 33 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~ 110 (264)
+.|..++..+...+.......+.++.+.++|.++++ +.+ -+.++|... +.......... ....+.++.+.|++ +
T Consensus 40 ~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~t-g~~~~l~~~~~~~~~~~~nd~~vd~~G-~ 115 (295)
T d2ghsa1 40 RELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTAT-GVLTLHAELESDLPGNRSNDGRMHPSG-A 115 (295)
T ss_dssp TEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTT-CCEEEEECSSTTCTTEEEEEEEECTTS-C
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeeccc-ceeeEEeeeecCCCcccceeeEECCCC-C
Confidence 345445443332222233457889999888877765 455 477777653 22211100111 12235666666654 3
Q ss_pred eEEEEeCCCcEEEEECCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcE
Q psy9316 111 LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 190 (264)
Q Consensus 111 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i 190 (264)
+.++...+ .... +.-.+|.+.. +.... ... ....-+.++|++++..++++.+..+.|
T Consensus 116 iw~~~~~~--------~~~~-----------~~g~l~~~~~-g~~~~--~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I 172 (295)
T d2ghsa1 116 LWIGTMGR--------KAET-----------GAGSIYHVAK-GKVTK--LFA-DISIPNSICFSPDGTTGYFVDTKVNRL 172 (295)
T ss_dssp EEEEEEET--------TCCT-----------TCEEEEEEET-TEEEE--EEE-EESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred EEEEeccc--------cccc-----------cceeEeeecC-CcEEE--Eee-ccCCcceeeecCCCceEEEeeccccee
Confidence 33322111 0000 0111222211 11110 011 112346788998777778888889999
Q ss_pred EEEeCCCCc------ceeEe----ecCceEEEEEcCCCCEEEEeeCCCeEEEEEcc
Q psy9316 191 RIWDARTQK------SQIIA----TKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236 (264)
Q Consensus 191 ~iwD~~t~~------~~~~~----~~~~~~~v~~sp~g~~la~gs~d~~i~~~d~~ 236 (264)
..|++.... ..... ..+.+-.+++..+|++.++.-..+.|..||..
T Consensus 173 ~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~ 228 (295)
T d2ghsa1 173 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 228 (295)
T ss_dssp EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred eEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC
Confidence 999875321 11111 12345678899999988887778899999954
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=91.52 E-value=2.1 Score=35.46 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=33.8
Q ss_pred CcEEEEeCCCCc---c-eeEeecCceEEEEEcCCCCEE-EEeeCCCeEEEEEccc
Q psy9316 188 KTVRIWDARTQK---S-QIIATKGENINITWAPNGNTI-AVGNKEDLVTFIDVVK 237 (264)
Q Consensus 188 g~i~iwD~~t~~---~-~~~~~~~~~~~v~~sp~g~~l-a~gs~d~~i~~~d~~~ 237 (264)
+-+.+-|.+... . ........+..+..+|||+|+ ++|.-+..+.++|+++
T Consensus 252 ngV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K 306 (459)
T d1fwxa2 252 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR 306 (459)
T ss_dssp TTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred CCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence 345666766422 1 112334456779999999998 5557789999999975
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.52 E-value=2.2 Score=32.51 Aligned_cols=189 Identities=10% Similarity=0.032 Sum_probs=100.8
Q ss_pred cCCCCEEEEEECCCCCeEEEEE-CCCcEEEEEeccCCCC-cccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEEC
Q psy9316 49 AHGSKVHSVAWSCDGRRLASGS-FDKSVAIFALDKKGDL-NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 126 (264)
Q Consensus 49 ~h~~~V~~l~~s~~g~~l~s~s-~dg~i~v~~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd~ 126 (264)
.....+.+++|++..+.|+-.. .++.|...+++..... ............+..+++.+.+.++..+-...+.|.+.++
T Consensus 27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~ 106 (266)
T d1ijqa1 27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 106 (266)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence 3445678999999888877664 4556666655421111 1112222223446677777666666666666788888888
Q ss_pred CCCCcceE----------EEeecCCCcE---------EEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCC
Q psy9316 127 RTQKSQIM----------LASGSFDKSV---------AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD 187 (264)
Q Consensus 127 ~~~~~~~~----------~~~~~~d~~i---------~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~d 187 (264)
+....... ++.-...|.+ .|+..+.++..... .....-.....+++.+.+..+..+-...
T Consensus 107 ~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~-l~~~~~~~p~gl~iD~~~~~lYw~d~~~ 185 (266)
T d1ijqa1 107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-LVTENIQWPNGITLDLLSGRLYWVDSKL 185 (266)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE-EECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec-ccccccceeeEEEeeccccEEEEecCCc
Confidence 75432111 1111111211 22222233322211 1222223456788887666676676778
Q ss_pred CcEEEEeCCCCcceeEeec----CceEEEEEcCCCCEEEEeeCCCeEEEEEcccCC
Q psy9316 188 KTVRIWDARTQKSQIIATK----GENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239 (264)
Q Consensus 188 g~i~iwD~~t~~~~~~~~~----~~~~~v~~sp~g~~la~gs~d~~i~~~d~~~~~ 239 (264)
+.|...|+........... ..+.++++. .+..+.+-..++.|+-.+...+.
T Consensus 186 ~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 186 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCc
Confidence 8999999877654333221 235667766 23333444567788888765543
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.98 E-value=8.2 Score=31.04 Aligned_cols=142 Identities=13% Similarity=0.078 Sum_probs=80.8
Q ss_pred CCEEEEEECCCCCeEEEEECCCcEEEEEecc------CCCCcccEEEecccccEEeEEEecCCCCeEEEEeCCCcEEEEE
Q psy9316 52 SKVHSVAWSCDGRRLASGSFDKSVAIFALDK------KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125 (264)
Q Consensus 52 ~~V~~l~~s~~g~~l~s~s~dg~i~v~~~~~------~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~s~s~dg~i~vwd 125 (264)
....-|+.++...+++.|+.++ +.|..+.. ..........+..-..|..++|+. +.++. ..++.+..++
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~---d~l~v-~~~~~l~~~~ 111 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHG---DQVLV-STRNALYSLD 111 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEET---TEEEE-EESSEEEEEE
T ss_pred cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeC---CEEEE-EeCCCEEEEE
Confidence 3456788888888888888775 56666331 011111111222223577788863 23433 3445566666
Q ss_pred CCCCCcceEEEeecCCCcEEEEEeccCCCccceEEEeccccceeeEEEcCCCCCEEEEEeCCCcEEEEeCCCCcceeEe-
Q psy9316 126 ARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA- 204 (264)
Q Consensus 126 ~~~~~~~~~~~~~~~d~~i~i~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~i~s~~~dg~i~iwD~~t~~~~~~~- 204 (264)
....... .....-..++..+.++|. .++....+|.+.++++.........
T Consensus 112 ~~~l~~~--------------------------~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~ 162 (381)
T d1xipa_ 112 LEELSEF--------------------------RTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQ 162 (381)
T ss_dssp SSSTTCE--------------------------EEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eeccccc--------------------------cccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccC
Confidence 6542211 011112245677777763 4455677999999999877532221
Q ss_pred ------ecCceEEEEEcCCCCEEEEeeCC
Q psy9316 205 ------TKGENINITWAPNGNTIAVGNKE 227 (264)
Q Consensus 205 ------~~~~~~~v~~sp~g~~la~gs~d 227 (264)
..+...+++|++.|+.++++..+
T Consensus 163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g~ 191 (381)
T d1xipa_ 163 NVTSFDVTNSQLAVLLKDRSFQSFAWRNG 191 (381)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEEETT
T ss_pred CcceEEecCCceEEEEeCCcEEEEEeCCC
Confidence 22456778899999988887533
|