Psyllid ID: psy933

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWVY
Secondary Structure (PSIPRED)
cEEEEEcccccccccEEccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccEEEEEccccccHHHHHHHHHHHccccccccccccccccccccccccEEEEEcHHHHHHHHHHccEEEEEEEccccccccHHHHHHHHHcccEEEEEccHHHHHHHHcccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHcccccEEEEcccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccHHHEEEcccccccEEcccHHHHHHHHHHHHccccccccccccccccccccccccEcccccccccHHHEEEEHHHHcccccccccEEEEccccccHHHHHHHHHHHHcccEEEcccEEcccccccccEcccEEEccHHHHHHHHHHccEEEEEEEccEEEEEEHHHHHHHHHcccEEEEEccHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHHccccccEEEHHHEcccHHHHHHHHHHHccEEEEcccHHHHHHHHHHHHHHHccccccEEEEEEc
Coil and Loop (DISEMBL)
mfqiiskddhnwWQARKdnvagsaglipspelqEWRTACSTIdktkheqvncsifgrkkkLYKDKYLAKhnavfdqldlVTYEEVVKLPSFKRKTLVLLGAhgvgrrhikntlinkfpdkyaypvphttrsprsdeengrayyfiSHDEMMSDIAANQyleygthedamygtKLETIRRIHQEGKIAILDVEPQALKilrtgefspfvvfiaapqlqnlsdydGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEElhttpqwipvswLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEElhttpqwipvswvy
Flexible Loop (DISEMBL)
mfqiiskddhnwwQARKDNVAGSaglipspelQEWRTACStidktkheqvncsifgrkkKLYKDKYLAKHnavfdqldlVTYEEVVKLPSFKRKTLVllgahgvgrrhikntlinkfpdkyaypvphttrsprsdeenGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEelhttpqwipvswvy
Low Complexity Region (SEG)
MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRkkklykdkylakHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWVY
Disordered region (IsUnstruct)
*********HNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPV**************RAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWV*
Disordered Region (DISOPRED)
MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQ************************************************YEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPV***************AYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQ*********************AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWVY
Disordered Region (DISEMBL)
MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP**********ENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWVY
Disordered Region (DISPRO)
MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTI********NC********L*KDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWVY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	330	2.2.26 [Sep-21-2011]
Q24210	898	Peripheral plasma membran	yes	N/A	0.845	0.310	0.784	1e-137
O14936	926	Peripheral plasma membran	yes	N/A	0.845	0.301	0.718	1e-116
O70589	926	Peripheral plasma membran	yes	N/A	0.845	0.301	0.715	1e-116
Q62915	909	Peripheral plasma membran	yes	N/A	0.830	0.301	0.693	1e-110
P54936	961	Protein lin-2 OS=Caenorha	no	N/A	0.845	0.290	0.613	1e-105
Q00013	466	55 kDa erythrocyte membra	no	N/A	0.830	0.587	0.546	2e-86
Q5RDW4	466	55 kDa erythrocyte membra	no	N/A	0.830	0.587	0.546	2e-86
Q5ZJ00	468	55 kDa erythrocyte membra	no	N/A	0.830	0.585	0.546	2e-86
A9CB74	466	55 kDa erythrocyte membra	N/A	N/A	0.830	0.587	0.542	7e-86
P70290	466	55 kDa erythrocyte membra	no	N/A	0.830	0.587	0.539	1e-85

>sp|Q24210|CSKP_DROME Peripheral plasma membrane protein CASK OS=Drosophila melanogaster GN=CASK PE=1 SV=4

 Score =  488 bits (1255), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 222/283 (78%), Positives = 254/283 (89%), Gaps = 4/283 (1%)

Query: 1   MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKK 60
           + QIISKDDH+WWQAR D V GSAGLIPSPELQEWR AC T+DKTK EQVNCSIFGRKKK
Sbjct: 615 ILQIISKDDHHWWQARLDTVGGSAGLIPSPELQEWRIACQTVDKTKQEQVNCSIFGRKKK 674

Query: 61  LYKDKYLAKHNAVFDQLDLVTYEEVVKLP----SFKRKTLVLLGAHGVGRRHIKNTLINK 116
             +DKYLAKHNA+FD LD+VTYEEVVK+P    +F+RKTLVLLGAHGVGRRHIKNTLI+K
Sbjct: 675 QCRDKYLAKHNAIFDTLDVVTYEEVVKVPVGDPNFQRKTLVLLGAHGVGRRHIKNTLISK 734

Query: 117 FPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLET 176
           +PDKYAYP+PHTTR  + +EENGR+YYF+SHDEMM+DI AN+YLEYGTHEDAMYGTKL+T
Sbjct: 735 YPDKYAYPIPHTTRPAKPEEENGRSYYFVSHDEMMADIGANEYLEYGTHEDAMYGTKLDT 794

Query: 177 IRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDIL 236
           IRRIH EGK+AILDVEPQALKILRT EF+P+VVFIAAP LQN++DYDGSLE+LAKES++L
Sbjct: 795 IRRIHTEGKMAILDVEPQALKILRTAEFTPYVVFIAAPSLQNIADYDGSLERLAKESEML 854

Query: 237 KSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
           +  Y HFFDLT+VNNDI ETI  LE AI+ +HTTPQW+PVSWL
Sbjct: 855 RQLYGHFFDLTIVNNDISETIATLETAIDRVHTTPQWVPVSWL 897

May regulate transmembrane proteins that bind calcium, calmodulin, or nucleotides. Functionally modulates eag potassium channels; increases eag current and whole-cell conductance. Also regulates autophosphorylation of CaMKII.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1EC: 7

>sp|O14936|CSKP_HUMAN Peripheral plasma membrane protein CASK OS=Homo sapiens GN=CASK PE=1 SV=3

 Score =  417 bits (1072), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/281 (71%), Positives = 242/281 (86%), Gaps = 2/281 (0%)

Query: 1   MFQIISKDDHNWWQARKDNVA-GSAGLIPSPELQEWRTACSTIDKTKHEQ-VNCSIFGRK 58
           + QIISKDDHNWWQ + +N   G+AGLIPSPELQEWR AC  ++KTK EQ  +C+ FG+K
Sbjct: 645 IIQIISKDDHNWWQGKLENSKNGTAGLIPSPELQEWRVACIAMEKTKQEQQASCTWFGKK 704

Query: 59  KKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
           KK YKDKYLAKHNAVFDQLDLVTYEEVVKLP+FKRKTLVLLGAHGVGRRHIKNTLI K P
Sbjct: 705 KKQYKDKYLAKHNAVFDQLDLVTYEEVVKLPAFKRKTLVLLGAHGVGRRHIKNTLITKHP 764

Query: 119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178
           D++AYP+PHTTR P+ DEENG+ YYF+SHD+MM DI+ N+YLEYG+HEDAMYGTKLETIR
Sbjct: 765 DRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIR 824

Query: 179 RIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS 238
           +IH++G IAILDVEPQALK+LRT EF+PFVVFIAAP +    + D SL++L KESDIL+ 
Sbjct: 825 KIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDILQR 884

Query: 239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
            Y H+FDLT++NN+I+ETI  LE+A+E + T PQW+PVSW+
Sbjct: 885 TYAHYFDLTIINNEIDETIRHLEEAVELVCTAPQWVPVSWV 925

Multidomain scaffolding protein with a role in synaptic transmembrane protein anchoring and ion channel trafficking. Contributes to neural development and regulation of gene expression via interaction with the transcription factor TRB1. Binds to cell-surface proteins, including amyloid precursor protein, neurexins and syndecans. May mediate a link between the extracellular matrix and the actin cytoskeleton via its interaction with syndecan and with the actin/spectrin-binding protein 4.1.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O70589|CSKP_MOUSE Peripheral plasma membrane protein CASK OS=Mus musculus GN=Cask PE=1 SV=2

 Score =  417 bits (1071), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/281 (71%), Positives = 242/281 (86%), Gaps = 2/281 (0%)

Query: 1   MFQIISKDDHNWWQARKDNVA-GSAGLIPSPELQEWRTACSTIDKTKHEQ-VNCSIFGRK 58
           + QIISKDDHNWWQ + +N   G+AGLIPSPELQEWR AC  ++KTK EQ  +C+ FG+K
Sbjct: 645 IIQIISKDDHNWWQGKLENSKNGTAGLIPSPELQEWRVACIAMEKTKQEQQASCTWFGKK 704

Query: 59  KKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
           KK YKDKYLAKHNAVFDQLDLVTYEEVVKLP+FKRKTLVLLGAHGVGRRHIKNTLI K P
Sbjct: 705 KKQYKDKYLAKHNAVFDQLDLVTYEEVVKLPAFKRKTLVLLGAHGVGRRHIKNTLITKHP 764

Query: 119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178
           D++AYP+PHTTR P+ DEENG+ YYF+SHD+MM DI+ N+YLEYG+HEDAMYGTKLETIR
Sbjct: 765 DRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIR 824

Query: 179 RIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS 238
           +IH++G IAILDVEPQALK+LRT EF+PFVVFIAAP +    + D SL++L KESD+L+ 
Sbjct: 825 KIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDVLQR 884

Query: 239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
            Y H+FDLT++NN+I+ETI  LE+A+E + T PQW+PVSW+
Sbjct: 885 TYAHYFDLTIINNEIDETIRHLEEAVELVCTAPQWVPVSWV 925

Multidomain scaffolding protein with a role in synaptic transmembrane protein anchoring and ion channel trafficking. Contributes to neural development and regulation of gene expression via interaction with the transcription factor TRB1. Binds to cell-surface proteins, including amyloid precursor protein, neurexins, and syndecans. May mediate a link between the extracellular matrix and the actin cytoskeleton via its interaction with syndecan and with the actin/spectrin-binding protein 4.1.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q62915|CSKP_RAT Peripheral plasma membrane protein CASK OS=Rattus norvegicus GN=Cask PE=1 SV=1

 Score =  397 bits (1021), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/281 (69%), Positives = 236/281 (83%), Gaps = 7/281 (2%)

Query: 1   MFQIISKDDHNWWQARKDNVA-GSAGLIPSPELQEWRTACSTIDKTKHEQ-VNCSIFGRK 58
           + QIISKDDHNWWQ + +N   G+AGLIPSPELQEWR AC  ++KTK EQ  +C+ FG+K
Sbjct: 633 IIQIISKDDHNWWQGKLENSKNGTAGLIPSPELQEWRVACIAMEKTKQEQQASCTWFGKK 692

Query: 59  KKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
           KK YKDKYLAKHNA     DLVTYEEVVKLP+FKRKTLVLLGAHGVGRRHIKNTLI K P
Sbjct: 693 KKQYKDKYLAKHNA-----DLVTYEEVVKLPAFKRKTLVLLGAHGVGRRHIKNTLITKHP 747

Query: 119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178
           +++AYP+PHTTR P+ DEENG+ YYF+SHD+MM DI+ N+YLEYG+HEDAMYGTKLETIR
Sbjct: 748 ERFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIR 807

Query: 179 RIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS 238
           +IH++G IAILDVEPQALK+LRT EF PFVVFIAAP +    + D SL++L KESD+L+ 
Sbjct: 808 KIHEQGLIAILDVEPQALKVLRTAEFPPFVVFIAAPTITPGLNEDESLQRLQKESDVLQR 867

Query: 239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
            Y H+FDLT++NN+I+ETI  LE+A+E + T PQW+PVSW+
Sbjct: 868 TYAHYFDLTIINNEIDETIRHLEEAVELVCTAPQWVPVSWV 908

Multidomain scaffolding protein with a role in synaptic transmembrane protein anchoring and ion channel trafficking. Contributes to neural development and regulation of gene expression via interaction with the transcription factor TRB1. Binds to cell-surface proteins, including amyloid precursor protein, neurexins, and syndecans. May mediate a link between the extracellular matrix and the actin cytoskeleton via its interaction with syndecan and with the actin/spectrin-binding protein 4.1.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P54936|LIN2_CAEEL Protein lin-2 OS=Caenorhabditis elegans GN=lin-2 PE=1 SV=1

 Score =  380 bits (976), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/295 (61%), Positives = 231/295 (78%), Gaps = 16/295 (5%)

Query: 1   MFQIISKDDHNWWQAR---------------KDNVAGSAGLIPSPELQEWRTACSTIDKT 45
           + Q+ISKDDHNWWQAR               + N    AGLIPSPELQEWRTAC  ++++
Sbjct: 666 ILQVISKDDHNWWQARFVSSFPSIGNSSNAQRSNQQQVAGLIPSPELQEWRTACLAMERS 725

Query: 46  KHE-QVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGV 104
           K+    +C  F +KKK Y  KYL KH+A+FDQLDLVTYEEV++L  ++RKTLVLLGAHGV
Sbjct: 726 KNTCNTHCMWFNKKKKYYTTKYLQKHSALFDQLDLVTYEEVMRLSQYRRKTLVLLGAHGV 785

Query: 105 GRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGT 164
           GRRHIKNTLI++ P+++AYP+PHTTR PR DE +G+ YYF+++++MM+DI  N+YLEYGT
Sbjct: 786 GRRHIKNTLIHRHPNRFAYPIPHTTRPPRKDEVDGKHYYFVTNEQMMADIQNNEYLEYGT 845

Query: 165 HEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDG 224
           HE++MYGTKLETIR IH+ GKIAILDVEPQALK+LRT E+SPFVVFIAAP LQ + D DG
Sbjct: 846 HEESMYGTKLETIRNIHKSGKIAILDVEPQALKVLRTAEYSPFVVFIAAPNLQGMQDPDG 905

Query: 225 SLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
           SLEKL  ESD+L+ A+ H FD  + N+DI++TI  LE+ +E+L   PQW+PV+W+
Sbjct: 906 SLEKLLNESDVLRQAFGHLFDFIITNSDIDDTIAQLERLVEKLPAYPQWLPVTWV 960

May play a structural role in the induction of the vulva. May be required for the localization of signal transduction molecules (such as let-23 receptor) to either the basal membrane domain or the cell junctions.

Caenorhabditis elegans (taxid: 6239)

>sp|Q00013|EM55_HUMAN 55 kDa erythrocyte membrane protein OS=Homo sapiens GN=MPP1 PE=1 SV=2

 Score =  319 bits (818), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 153/280 (54%), Positives = 216/280 (77%), Gaps = 6/280 (2%)

Query: 1   MFQIISKDDHNWWQARKDNVAG-SAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKK 59
           + QII+KDD NWWQ R +  +  SAGLIPSPELQEWR A S       E  +CS FG+KK
Sbjct: 191 IIQIINKDDSNWWQGRVEGSSKESAGLIPSPELQEWRVA-SMAQSAPSEAPSCSPFGKKK 249

Query: 60  KLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPD 119
           K    KYLAKH+++FDQLD+V+YEEVV+LP+FKRKTLVL+GA GVGR HIKN L+++ P+
Sbjct: 250 KYKD-KYLAKHSSIFDQLDVVSYEEVVRLPAFKRKTLVLIGASGVGRSHIKNALLSQNPE 308

Query: 120 KYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRR 179
           K+ YPVP+TTR PR  EE+G+ Y+FIS +EM  +I+AN++LE+G+++  M+GTK ET+ +
Sbjct: 309 KFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQ 368

Query: 180 IHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSA 239
           IH++ KIAILD+EPQ LKI+RT E SPF+VFIA       ++   +L++L K+S+ ++S 
Sbjct: 369 IHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTE---ALQQLQKDSEAIRSQ 425

Query: 240 YEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
           Y H+FDL++VNN ++ET+  L++A ++  ++PQW+PVSW+
Sbjct: 426 YAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQWVPVSWV 465

Essential regulator of neutrophil polarity. Regulates neutrophil polarization by regulating AKT1 phosphorylation through a mechanism that is independent of PIK3CG activity.

Homo sapiens (taxid: 9606)

>sp|Q5RDW4|EM55_PONAB 55 kDa erythrocyte membrane protein OS=Pongo abelii GN=MPP1 PE=2 SV=1

 Score =  319 bits (817), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 153/280 (54%), Positives = 216/280 (77%), Gaps = 6/280 (2%)

Query: 1   MFQIISKDDHNWWQARKDNVAG-SAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKK 59
           + QII+KDD NWWQ R +  +  SAGLIPSPELQEWR A S       E  +CS FG+KK
Sbjct: 191 IIQIINKDDSNWWQGRVEGSSKESAGLIPSPELQEWRVA-SVAQSAPSEAPSCSPFGKKK 249

Query: 60  KLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPD 119
           K    KYLAKH+++FDQLD+V+YEEVV+LP+FKRKTLVL+GA GVGR HIKN L+++ P+
Sbjct: 250 KYKD-KYLAKHSSIFDQLDVVSYEEVVRLPAFKRKTLVLIGASGVGRSHIKNALLSQNPE 308

Query: 120 KYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRR 179
           K+ YPVP+TTR PR  EE+G+ Y+FIS +EM  +I+AN++LE+G+++  M+GTK ET+ +
Sbjct: 309 KFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQ 368

Query: 180 IHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSA 239
           IH++ KIAILD+EPQ LKI+RT E SPF+VFIA       ++   +L++L K+S+ ++S 
Sbjct: 369 IHKQDKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTE---ALQQLQKDSEAIRSQ 425

Query: 240 YEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
           Y H+FDL++VNN ++ET+  L++A ++  ++PQW+PVSW+
Sbjct: 426 YAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQWVPVSWV 465

Essential regulator of neutrophil polarity. Regulates neutrophil polarization by regulating AKT1 phosphorylation through a mechanism that is independent of PIK3CG activity.

Pongo abelii (taxid: 9601)

>sp|Q5ZJ00|EM55_CHICK 55 kDa erythrocyte membrane protein OS=Gallus gallus GN=MPP1 PE=2 SV=1

 Score =  318 bits (816), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 153/280 (54%), Positives = 215/280 (76%), Gaps = 6/280 (2%)

Query: 1   MFQIISKDDHNWWQARKDNVAG-SAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKK 59
           + QII+KDD NWWQ R +     SAGLIPSPELQEWR A S    ++ E  +CS FG+KK
Sbjct: 193 VIQIINKDDSNWWQGRVEGSGTESAGLIPSPELQEWRVA-SVTQSSQSEAQSCSPFGKKK 251

Query: 60  KLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPD 119
           K    KYLAKH+++FDQLD+V+YEEVV+LP+FKRKTLVL+GA GVGR HIKN L++  P+
Sbjct: 252 KYKD-KYLAKHSSIFDQLDVVSYEEVVRLPAFKRKTLVLIGASGVGRSHIKNALLSNNPE 310

Query: 120 KYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRR 179
           K+ YP P+TTR  + +E +G+ YYF+S +EM  DI+AN++LE+G+++  M+GTK ET+ +
Sbjct: 311 KFMYPPPYTTRPQKKNEVDGKDYYFVSTEEMTRDISANEFLEFGSYQGNMFGTKFETVHK 370

Query: 180 IHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSA 239
           IHQ+ K+AILD+EPQ LKI+RT E SPF+VFIA       S+   +L++L K+S+ ++S 
Sbjct: 371 IHQQDKVAILDIEPQTLKIVRTAELSPFIVFIAPTDKAEESE---ALQQLRKDSESIRSR 427

Query: 240 YEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
           Y H+FDL++VNN +EE++ +LE+A E+  ++PQW+PVSW+
Sbjct: 428 YAHYFDLSIVNNGVEESLKLLEEAFEQACSSPQWVPVSWV 467

May play a role in the regulation of neutrophil polarization.

Gallus gallus (taxid: 9031)

>sp|A9CB74|EM55_PAPAN 55 kDa erythrocyte membrane protein OS=Papio anubis GN=MPP1 PE=3 SV=1

 Score =  317 bits (812), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 152/280 (54%), Positives = 215/280 (76%), Gaps = 6/280 (2%)

Query: 1   MFQIISKDDHNWWQARKDNVAG-SAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKK 59
           + QII+KDD NWWQ R +  +  SAGLIPSPELQEWR A S       E  +CS FG+KK
Sbjct: 191 IIQIINKDDSNWWQGRVEGSSKESAGLIPSPELQEWRVA-SIAQSAPSEAPSCSPFGKKK 249

Query: 60  KLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPD 119
           K    KYLAKH+++FDQLD+V+YEEVV+LP+FKRKTLVL+GA GVGR HIKN L+++ P+
Sbjct: 250 KYKD-KYLAKHSSIFDQLDVVSYEEVVRLPAFKRKTLVLIGASGVGRSHIKNALLSQNPE 308

Query: 120 KYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRR 179
           K+ YP P+TTR PR  EE+G+ Y+FIS +EM  +I+AN++LE+G+++  M+GTK ET+ +
Sbjct: 309 KFVYPAPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQ 368

Query: 180 IHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSA 239
           IH++ KIAILD+EPQ LKI+RT E SPF+VFIA       ++   +L++L K+S+ ++S 
Sbjct: 369 IHKQDKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTE---ALQQLQKDSEAIRSQ 425

Query: 240 YEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
           Y H+FDL++VNN ++ET+  L++A ++  ++PQW+PVSW+
Sbjct: 426 YAHYFDLSLVNNSVDETLKKLQEAFDQACSSPQWVPVSWV 465

Essential regulator of neutrophil polarity. Regulates neutrophil polarization by regulating AKT1 phosphorylation through a mechanism that is independent of PIK3CG activity.

Papio anubis (taxid: 9555)

>sp|P70290|EM55_MOUSE 55 kDa erythrocyte membrane protein OS=Mus musculus GN=Mpp1 PE=1 SV=1

 Score =  317 bits (811), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 151/280 (53%), Positives = 214/280 (76%), Gaps = 6/280 (2%)

Query: 1   MFQIISKDDHNWWQARKDNVAG-SAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKK 59
           + QII+KDD NWWQ R +  +  SAGLIPSPELQEWR A S       E  +CS FG+KK
Sbjct: 191 IIQIINKDDSNWWQGRVEGSSKESAGLIPSPELQEWRVA-SVAHSAPSEAPSCSPFGKKK 249

Query: 60  KLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPD 119
           K    KYLAKH+++FDQLD+V+YEEVV+LP+FKRKTLVL+GA GVGR HIKN L++  P+
Sbjct: 250 KCKD-KYLAKHSSIFDQLDVVSYEEVVRLPAFKRKTLVLIGASGVGRSHIKNGLLSHNPE 308

Query: 120 KYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRR 179
           K+AYP P+TTR P+  EE+G+ Y+FIS +EM  +I+AN++LE+G+++  M+GTK ET+ +
Sbjct: 309 KFAYPAPYTTRPPKKSEEDGKEYHFISTEEMTKNISANEFLEFGSYQGNMFGTKFETVHQ 368

Query: 180 IHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSA 239
           IH++ KIAILD+EPQ LK +RT E SPF+VFIA       ++   +L++L K+S+ ++S 
Sbjct: 369 IHKQDKIAILDIEPQTLKTVRTAELSPFIVFIAPTDQGTQTE---ALQQLQKDSEAIRSQ 425

Query: 240 YEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
           Y H+FDL++VNN ++ET+  L++A ++  ++PQW+PVSW+
Sbjct: 426 YAHYFDLSLVNNSVDETLKKLQEAFDQACSSPQWVPVSWV 465

Essential regulator of neutrophil polarity. Regulates neutrophil polarization by regulating AKT1 phosphorylation through a mechanism that is independent of PIK3CG activity.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
189235646	893	PREDICTED: similar to AGAP001683-PA [Tri	0.845	0.312	0.816	1e-140
270003442	966	hypothetical protein TcasGA2_TC002673 [T	0.845	0.288	0.816	1e-140
307171984	407	Calcium/calmodulin-dependent protein kin	0.845	0.685	0.811	1e-138
322798021	312	hypothetical protein SINV_08073 [Solenop	0.845	0.894	0.811	1e-138
195400208	1039	GJ14160 [Drosophila virilis] gi|19414227	0.845	0.268	0.791	1e-136
195453154	608	GK13019 [Drosophila willistoni] gi|19416	0.845	0.458	0.791	1e-136
194742992	1169	GF16967 [Drosophila ananassae] gi|190627	0.845	0.238	0.791	1e-136
345490096	919	PREDICTED: peripheral plasma membrane pr	0.845	0.303	0.793	1e-136
345490094	905	PREDICTED: peripheral plasma membrane pr	0.845	0.308	0.793	1e-136
195110523	594	GI22862 [Drosophila mojavensis] gi|19391	0.845	0.469	0.787	1e-135

>gi|189235646|ref|XP_968349.2| PREDICTED: similar to AGAP001683-PA [Tribolium castaneum]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 231/283 (81%), Positives = 260/283 (91%), Gaps = 4/283 (1%)

Query: 1   MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKK 60
           + QIISKDDH+WWQARKDN AGSAGLIPSPELQEWR AC+ ++KTK EQVNCSIFGRKKK
Sbjct: 610 ILQIISKDDHHWWQARKDNSAGSAGLIPSPELQEWRAACAAMEKTKQEQVNCSIFGRKKK 669

Query: 61  LYKDKYLAKHNAVFDQLDLVTYEEVVKLP----SFKRKTLVLLGAHGVGRRHIKNTLINK 116
            YKDKYLAKHNAVFDQLDLVTYEEVVKLP    +F+RKTLVLLGAHGVGRRHIKNTLI K
Sbjct: 670 QYKDKYLAKHNAVFDQLDLVTYEEVVKLPMTDPAFQRKTLVLLGAHGVGRRHIKNTLIAK 729

Query: 117 FPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLET 176
            PD+YAYP+PHTTR PR+DEENGR Y+F+SHDEMM+DIAAN+YLEYGTHEDAMYGTKL+T
Sbjct: 730 HPDQYAYPIPHTTRQPRADEENGRNYFFVSHDEMMADIAANEYLEYGTHEDAMYGTKLDT 789

Query: 177 IRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDIL 236
           IR+IHQEGK+AILDVEPQALK+LRT EFSP+VVFIAAP LQN++DYDGSLE+LAKESD+L
Sbjct: 790 IRKIHQEGKMAILDVEPQALKVLRTAEFSPYVVFIAAPALQNIADYDGSLERLAKESDML 849

Query: 237 KSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
           + AY H+FDLT+VNNDI+ETI  LE AIE + TTPQWIPVSW+
Sbjct: 850 RQAYGHYFDLTIVNNDIDETIAALEAAIERVQTTPQWIPVSWV 892

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003442|gb|EEZ99889.1| hypothetical protein TcasGA2_TC002673 [Tribolium castaneum]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 231/283 (81%), Positives = 260/283 (91%), Gaps = 4/283 (1%)

Query: 1   MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKK 60
           + QIISKDDH+WWQARKDN AGSAGLIPSPELQEWR AC+ ++KTK EQVNCSIFGRKKK
Sbjct: 683 ILQIISKDDHHWWQARKDNSAGSAGLIPSPELQEWRAACAAMEKTKQEQVNCSIFGRKKK 742

Query: 61  LYKDKYLAKHNAVFDQLDLVTYEEVVKLP----SFKRKTLVLLGAHGVGRRHIKNTLINK 116
            YKDKYLAKHNAVFDQLDLVTYEEVVKLP    +F+RKTLVLLGAHGVGRRHIKNTLI K
Sbjct: 743 QYKDKYLAKHNAVFDQLDLVTYEEVVKLPMTDPAFQRKTLVLLGAHGVGRRHIKNTLIAK 802

Query: 117 FPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLET 176
            PD+YAYP+PHTTR PR+DEENGR Y+F+SHDEMM+DIAAN+YLEYGTHEDAMYGTKL+T
Sbjct: 803 HPDQYAYPIPHTTRQPRADEENGRNYFFVSHDEMMADIAANEYLEYGTHEDAMYGTKLDT 862

Query: 177 IRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDIL 236
           IR+IHQEGK+AILDVEPQALK+LRT EFSP+VVFIAAP LQN++DYDGSLE+LAKESD+L
Sbjct: 863 IRKIHQEGKMAILDVEPQALKVLRTAEFSPYVVFIAAPALQNIADYDGSLERLAKESDML 922

Query: 237 KSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
           + AY H+FDLT+VNNDI+ETI  LE AIE + TTPQWIPVSW+
Sbjct: 923 RQAYGHYFDLTIVNNDIDETIAALEAAIERVQTTPQWIPVSWV 965

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171984|gb|EFN63593.1| Calcium/calmodulin-dependent protein kinase [Camponotus floridanus]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 228/281 (81%), Positives = 259/281 (92%), Gaps = 2/281 (0%)

Query: 1   MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKK 60
           + QIISKDDH+WWQARKDN AGSAGLIPSPELQEWR AC +++K K EQVNCSIFGRKKK
Sbjct: 126 ILQIISKDDHHWWQARKDNAAGSAGLIPSPELQEWRIACMSMEKNKQEQVNCSIFGRKKK 185

Query: 61  LYKDKYLAKHNAVFDQLDLVTYEEVVKLP--SFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
            YKDKYLAKHNAVFDQLDLVTYEEVVKLP  +F+RKTLVLLGAHGVGRRHIKNT+I+K P
Sbjct: 186 QYKDKYLAKHNAVFDQLDLVTYEEVVKLPYPAFQRKTLVLLGAHGVGRRHIKNTIISKHP 245

Query: 119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178
           DKYAYP+PHTTR PRSDEENGR YYF+SHDEMM+DIAAN+YLEYGTHEDAMYGTKLETIR
Sbjct: 246 DKYAYPIPHTTRPPRSDEENGRNYYFVSHDEMMADIAANEYLEYGTHEDAMYGTKLETIR 305

Query: 179 RIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS 238
           +IH+EG++AILDVEPQALK+LRT EF+P+VVFIAAP   N++D+DGSLE+LAKESD+LK 
Sbjct: 306 KIHEEGRMAILDVEPQALKVLRTAEFAPYVVFIAAPAFANVTDFDGSLERLAKESDMLKQ 365

Query: 239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
           AY HFFDLT+VNND++ETI  LE AIE +HTTPQW+PVSW+
Sbjct: 366 AYGHFFDLTIVNNDLDETIAQLEAAIERVHTTPQWVPVSWV 406

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322798021|gb|EFZ19865.1| hypothetical protein SINV_08073 [Solenopsis invicta]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 228/281 (81%), Positives = 259/281 (92%), Gaps = 2/281 (0%)

Query: 1   MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKK 60
           + QIISKDDH+WWQARKDN AGSAGLIPSPELQEWR AC +++K K EQVNCSIFGRKKK
Sbjct: 31  ILQIISKDDHHWWQARKDNAAGSAGLIPSPELQEWRIACMSMEKNKQEQVNCSIFGRKKK 90

Query: 61  LYKDKYLAKHNAVFDQLDLVTYEEVVKLP--SFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
            YKDKYLAKHNAVFDQLDLVTYEEVVKLP  +F+RKTLVLLGAHGVGRRHIKNT+I+K P
Sbjct: 91  QYKDKYLAKHNAVFDQLDLVTYEEVVKLPYPAFQRKTLVLLGAHGVGRRHIKNTIISKHP 150

Query: 119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178
           DKYAYP+PHTTR PRSDEENGR YYF+SHDEMM+DIAAN+YLEYGTHEDAMYGTKLETIR
Sbjct: 151 DKYAYPIPHTTRPPRSDEENGRNYYFVSHDEMMADIAANEYLEYGTHEDAMYGTKLETIR 210

Query: 179 RIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS 238
           +IH+EG++AILDVEPQALK+LRT EF+P+VVFIAAP   N++D+DGSLE+LAKESD+LK 
Sbjct: 211 KIHEEGRMAILDVEPQALKVLRTAEFAPYVVFIAAPAFANVTDFDGSLERLAKESDMLKQ 270

Query: 239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
           AY HFFDLT+VNND++ETI  LE AIE +HTTPQW+PVSW+
Sbjct: 271 AYGHFFDLTIVNNDLDETIAQLEAAIERVHTTPQWVPVSWV 311

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195400208|ref|XP_002058710.1| GJ14160 [Drosophila virilis] gi|194142270|gb|EDW58678.1| GJ14160 [Drosophila virilis]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 224/283 (79%), Positives = 254/283 (89%), Gaps = 4/283 (1%)

Query: 1    MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKK 60
            + QIISKDDH+WWQAR D V GSAGLIPSPELQEWR AC T+DKTK EQVNCSIFGRKKK
Sbjct: 756  ILQIISKDDHHWWQARIDTVGGSAGLIPSPELQEWRIACQTVDKTKQEQVNCSIFGRKKK 815

Query: 61   LYKDKYLAKHNAVFDQLDLVTYEEVVKLP----SFKRKTLVLLGAHGVGRRHIKNTLINK 116
              +DKYLAKHNA+FD LD+VTYEEVVK+P    +F+RKTLVLLGAHGVGRRHIKNTLI+K
Sbjct: 816  QCRDKYLAKHNAIFDTLDVVTYEEVVKVPVGDPNFQRKTLVLLGAHGVGRRHIKNTLISK 875

Query: 117  FPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLET 176
            +PDKYAYP+PHTTR  + +EENGR+YYF+SHDEMM+DI AN+YLEYGTHEDAMYGTKL+T
Sbjct: 876  YPDKYAYPIPHTTRPAKPEEENGRSYYFVSHDEMMADIGANEYLEYGTHEDAMYGTKLDT 935

Query: 177  IRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDIL 236
            IRRIH EGK+AILDVEPQALKILRT EF+P+VVFIAAP LQN++DYDGSLE+LAKESD+L
Sbjct: 936  IRRIHTEGKMAILDVEPQALKILRTAEFTPYVVFIAAPSLQNIADYDGSLERLAKESDML 995

Query: 237  KSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
            +  Y HFFDLT+VNNDI ETI  LE AIE +HTTPQW+PVSWL
Sbjct: 996  RQLYGHFFDLTIVNNDISETIATLESAIERVHTTPQWVPVSWL 1038

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195453154|ref|XP_002073662.1| GK13019 [Drosophila willistoni] gi|194169747|gb|EDW84648.1| GK13019 [Drosophila willistoni]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 224/283 (79%), Positives = 254/283 (89%), Gaps = 4/283 (1%)

Query: 1   MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKK 60
           + QIISKDDH+WWQAR D V GSAGLIPSPELQEWR AC T+DKTK EQVNCSIFGRKKK
Sbjct: 325 ILQIISKDDHHWWQARLDTVGGSAGLIPSPELQEWRIACQTVDKTKQEQVNCSIFGRKKK 384

Query: 61  LYKDKYLAKHNAVFDQLDLVTYEEVVKLP----SFKRKTLVLLGAHGVGRRHIKNTLINK 116
             +DKYLAKHNA+FD LD+VTYEEVVK+P    +F+RKTLVLLGAHGVGRRHIKNTLI+K
Sbjct: 385 QCRDKYLAKHNAIFDTLDVVTYEEVVKVPVGDPNFQRKTLVLLGAHGVGRRHIKNTLISK 444

Query: 117 FPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLET 176
           +PDKYAYP+PHTTR  + +EENGR+YYF+SHDEMM+DI AN+YLEYGTHEDAMYGTKL+T
Sbjct: 445 YPDKYAYPIPHTTRPAKPEEENGRSYYFVSHDEMMADIGANEYLEYGTHEDAMYGTKLDT 504

Query: 177 IRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDIL 236
           IRRIH EGK+AILDVEPQALKILRT EF+P+VVFIAAP LQN++DYDGSLE+LAKESD+L
Sbjct: 505 IRRIHTEGKMAILDVEPQALKILRTAEFTPYVVFIAAPSLQNIADYDGSLERLAKESDML 564

Query: 237 KSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
           +  Y HFFDLT+VNNDI ETI  LE AIE +HTTPQW+PVSWL
Sbjct: 565 RQLYGHFFDLTIVNNDISETIATLETAIERVHTTPQWVPVSWL 607

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194742992|ref|XP_001953984.1| GF16967 [Drosophila ananassae] gi|190627021|gb|EDV42545.1| GF16967 [Drosophila ananassae]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 224/283 (79%), Positives = 254/283 (89%), Gaps = 4/283 (1%)

Query: 1    MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKK 60
            + QIISKDDH+WWQAR D V GSAGLIPSPELQEWR AC T+DKTK EQVNCSIFGRKKK
Sbjct: 886  ILQIISKDDHHWWQARLDTVGGSAGLIPSPELQEWRIACQTVDKTKQEQVNCSIFGRKKK 945

Query: 61   LYKDKYLAKHNAVFDQLDLVTYEEVVKLP----SFKRKTLVLLGAHGVGRRHIKNTLINK 116
              +DKYLAKHNA+FD LD+VTYEEVVK+P    +F+RKTLVLLGAHGVGRRHIKNTLI+K
Sbjct: 946  QCRDKYLAKHNAIFDTLDVVTYEEVVKVPVGDPNFQRKTLVLLGAHGVGRRHIKNTLISK 1005

Query: 117  FPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLET 176
            +PDKYAYP+PHTTR  + +EENGR+YYF+SHDEMM+DI AN+YLEYGTHEDAMYGTKL+T
Sbjct: 1006 YPDKYAYPIPHTTRPAKPEEENGRSYYFVSHDEMMADIGANEYLEYGTHEDAMYGTKLDT 1065

Query: 177  IRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDIL 236
            IRRIH EGK+AILDVEPQALKILRT EF+P+VVFIAAP LQN++DYDGSLE+LAKESD+L
Sbjct: 1066 IRRIHTEGKMAILDVEPQALKILRTAEFTPYVVFIAAPSLQNIADYDGSLERLAKESDML 1125

Query: 237  KSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
            +  Y HFFDLT+VNNDI ETI  LE AIE +HTTPQW+PVSWL
Sbjct: 1126 RQLYGHFFDLTIVNNDISETIATLETAIERVHTTPQWVPVSWL 1168

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490096|ref|XP_003426296.1| PREDICTED: peripheral plasma membrane protein CASK-like [Nasonia vitripennis]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 223/281 (79%), Positives = 254/281 (90%), Gaps = 2/281 (0%)

Query: 1   MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKK 60
           + QIISKDDH+WWQARKD   GSAGLIPSPELQEWR AC  ++K K EQVNCSIFGRKKK
Sbjct: 638 ILQIISKDDHHWWQARKDQAGGSAGLIPSPELQEWRIACMAMEKNKQEQVNCSIFGRKKK 697

Query: 61  LYKDKYLAKHNAVFDQLDLVTYEEVVKLP--SFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
            YKDKYLAKHNAVFDQLDLVTYEEVVKLP  +F+RKTLVLLGAHGVGRRHIKNT+I K P
Sbjct: 698 QYKDKYLAKHNAVFDQLDLVTYEEVVKLPYSAFQRKTLVLLGAHGVGRRHIKNTIIAKHP 757

Query: 119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178
           DKYAYP+PHTTR PR+DEENGR YYF+SH+EMM+DIAAN+YLEYGTHEDAMYGTK+ETIR
Sbjct: 758 DKYAYPIPHTTRPPRNDEENGRNYYFVSHEEMMADIAANEYLEYGTHEDAMYGTKIETIR 817

Query: 179 RIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS 238
           +I +EG++AILD+EP +LK+LRT EF+P+VVFIAAP LQNL+DYDGSLE+LAKESD+L+ 
Sbjct: 818 KILEEGRLAILDIEPHSLKVLRTAEFAPYVVFIAAPALQNLADYDGSLERLAKESDMLRQ 877

Query: 239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
           AY HFFDLT+VNNDI+ETI  LE AIE  HTTPQW+PVSW+
Sbjct: 878 AYGHFFDLTIVNNDIDETIAQLEDAIERFHTTPQWVPVSWV 918

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490094|ref|XP_001602666.2| PREDICTED: peripheral plasma membrane protein CASK-like isoform 1 [Nasonia vitripennis]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 223/281 (79%), Positives = 254/281 (90%), Gaps = 2/281 (0%)

Query: 1   MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKK 60
           + QIISKDDH+WWQARKD   GSAGLIPSPELQEWR AC  ++K K EQVNCSIFGRKKK
Sbjct: 624 ILQIISKDDHHWWQARKDQAGGSAGLIPSPELQEWRIACMAMEKNKQEQVNCSIFGRKKK 683

Query: 61  LYKDKYLAKHNAVFDQLDLVTYEEVVKLP--SFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
            YKDKYLAKHNAVFDQLDLVTYEEVVKLP  +F+RKTLVLLGAHGVGRRHIKNT+I K P
Sbjct: 684 QYKDKYLAKHNAVFDQLDLVTYEEVVKLPYSAFQRKTLVLLGAHGVGRRHIKNTIIAKHP 743

Query: 119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178
           DKYAYP+PHTTR PR+DEENGR YYF+SH+EMM+DIAAN+YLEYGTHEDAMYGTK+ETIR
Sbjct: 744 DKYAYPIPHTTRPPRNDEENGRNYYFVSHEEMMADIAANEYLEYGTHEDAMYGTKIETIR 803

Query: 179 RIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS 238
           +I +EG++AILD+EP +LK+LRT EF+P+VVFIAAP LQNL+DYDGSLE+LAKESD+L+ 
Sbjct: 804 KILEEGRLAILDIEPHSLKVLRTAEFAPYVVFIAAPALQNLADYDGSLERLAKESDMLRQ 863

Query: 239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
           AY HFFDLT+VNNDI+ETI  LE AIE  HTTPQW+PVSW+
Sbjct: 864 AYGHFFDLTIVNNDIDETIAQLEDAIERFHTTPQWVPVSWV 904

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195110523|ref|XP_001999829.1| GI22862 [Drosophila mojavensis] gi|193916423|gb|EDW15290.1| GI22862 [Drosophila mojavensis]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 223/283 (78%), Positives = 254/283 (89%), Gaps = 4/283 (1%)

Query: 1   MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKK 60
           + QIISKDDH+WWQAR D V GSAGLIPSPELQEWR AC T+DKTK EQVNCSIFGRKKK
Sbjct: 311 ILQIISKDDHHWWQARIDTVGGSAGLIPSPELQEWRIACQTVDKTKQEQVNCSIFGRKKK 370

Query: 61  LYKDKYLAKHNAVFDQLDLVTYEEVVKLP----SFKRKTLVLLGAHGVGRRHIKNTLINK 116
             +DKYLAKHNA+FD LD+VTYEEVVK+P    +F+RKTLVLLGAHGVGRRHIKNTLI+K
Sbjct: 371 QCRDKYLAKHNAIFDTLDVVTYEEVVKVPVGDPNFQRKTLVLLGAHGVGRRHIKNTLISK 430

Query: 117 FPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLET 176
           +PDKYAYP+PHTTR  + +EENGR+YYF+SHDEMM+DI AN+YLEYGTHEDAMYGTKL+T
Sbjct: 431 YPDKYAYPIPHTTRPAKPEEENGRSYYFVSHDEMMADIGANEYLEYGTHEDAMYGTKLDT 490

Query: 177 IRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDIL 236
           IRRIH EGK+AILDVEPQALKILRT EF+P+VVFIAAP LQN++DYDGSLE+LAKESD+L
Sbjct: 491 IRRIHTEGKMAILDVEPQALKILRTAEFTPYVVFIAAPSLQNIADYDGSLERLAKESDML 550

Query: 237 KSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
           +  Y HFFDLT+VNNDI ETI  LE AI+ +HTTPQW+PVSWL
Sbjct: 551 RQLYGHFFDLTIVNNDISETIATLESAIDRVHTTPQWVPVSWL 593

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
FB|FBgn0013759	898	CASK "CASK ortholog" [Drosophi	0.845	0.310	0.752	2.6e-118
UNIPROTKB|A5D7B9	908	CASK "CASK protein" [Bos tauru	0.845	0.307	0.679	2.8e-105
UNIPROTKB|J9NZ27	897	CASK "Uncharacterized protein"	0.845	0.311	0.679	5.8e-105
UNIPROTKB|O14936	926	CASK "Peripheral plasma membra	0.845	0.301	0.679	5.8e-105
UNIPROTKB|F1RX15	799	CASK "Uncharacterized protein"	0.845	0.349	0.679	5.8e-105
UNIPROTKB|K7GSB2	908	CASK "Uncharacterized protein"	0.845	0.307	0.679	5.8e-105
MGI|MGI:1309489	926	Cask "calcium/calmodulin-depen	0.845	0.301	0.676	7.5e-105
UNIPROTKB|D4A8M2	920	Cask "Peripheral plasma membra	0.845	0.303	0.672	2e-104
UNIPROTKB|E1BWL4	920	CASK "Uncharacterized protein"	0.845	0.303	0.676	8.6e-104
UNIPROTKB|E2RLG1	921	CASK "Uncharacterized protein"	0.830	0.297	0.661	1.7e-100

FB|FBgn0013759 CASK "CASK ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
 Identities = 213/283 (75%), Positives = 244/283 (86%)

Query:     1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRXXX 60
             + QIISKDDH+WWQAR D V GSAGLIPSPELQEWR AC T+DKTK EQVNCSIFGR   
Sbjct:   615 ILQIISKDDHHWWQARLDTVGGSAGLIPSPELQEWRIACQTVDKTKQEQVNCSIFGRKKK 674

Query:    61 XXXXXXXXXHNAVFDQLDLVTYEEVVKLP----SFKRKTLVLLGAHGVGRRHIKNTLINK 116
                      HNA+FD LD+VTYEEVVK+P    +F+RKTLVLLGAHGVGRRHIKNTLI+K
Sbjct:   675 QCRDKYLAKHNAIFDTLDVVTYEEVVKVPVGDPNFQRKTLVLLGAHGVGRRHIKNTLISK 734

Query:   117 FPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLET 176
             +PDKYAYP+PHTTR  + +EENGR+YYF+SHDEMM+DI AN+YLEYGTHEDAMYGTKL+T
Sbjct:   735 YPDKYAYPIPHTTRPAKPEEENGRSYYFVSHDEMMADIGANEYLEYGTHEDAMYGTKLDT 794

Query:   177 IRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDIL 236
             IRRIH EGK+AILDVEPQALKILRT EF+P+VVFIAAP LQN++DYDGSLE+LAKES++L
Sbjct:   795 IRRIHTEGKMAILDVEPQALKILRTAEFTPYVVFIAAPSLQNIADYDGSLERLAKESEML 854

Query:   237 KSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
             +  Y HFFDLT+VNNDI ETI  LE AI+ +HTTPQW+PVSWL
Sbjct:   855 RQLYGHFFDLTIVNNDISETIATLETAIDRVHTTPQWVPVSWL 897

GO:0007628 "adult walking behavior" evidence=IMP

GO:0005954 "calcium- and calmodulin-dependent protein kinase complex" evidence=ISS

GO:0004683 "calmodulin-dependent protein kinase activity" evidence=ISS;IDA

GO:0016080 "synaptic vesicle targeting" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=NAS

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0007155 "cell adhesion" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0046928 "regulation of neurotransmitter secretion" evidence=IDA

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0008049 "male courtship behavior" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|A5D7B9 CASK "CASK protein" [Bos taurus (taxid:9913)]

 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 191/281 (67%), Positives = 231/281 (82%)

Query:     1 MFQIISKDDHNWWQARKDNVA-GSAGLIPSPELQEWRTACSTIDKTKHEQ-VNCSIFGRX 58
             + QIISKDDHNWWQ + +N   G+AGLIPSPELQEWR AC  ++KTK EQ  +C+ FG+ 
Sbjct:   627 IIQIISKDDHNWWQGKLENSKNGTAGLIPSPELQEWRVACIAMEKTKQEQQASCTWFGKK 686

Query:    59 XXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
                        HNAVFDQLDLVTYEEVVKLP+FKRKTLVLLGAHGVGRRHIKNTLI K P
Sbjct:   687 KKQYKDKYLAKHNAVFDQLDLVTYEEVVKLPAFKRKTLVLLGAHGVGRRHIKNTLITKHP 746

Query:   119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178
             D++AYP+PHTTR P+ DEENG+ YYF+SHD+MM DI+ N+YLEYG+HEDAMYGTKLETIR
Sbjct:   747 DRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIR 806

Query:   179 RIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS 238
             +IH++G IAILDVEPQALK+LRT EF+PFVVFIAAP +    + D SL++L KESDIL+ 
Sbjct:   807 KIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDILQR 866

Query:   239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
              Y H+FDLT++NN+I+ETI  LE+A+E + T PQW+PVSW+
Sbjct:   867 TYAHYFDLTIINNEIDETIRHLEEAVEHVCTAPQWVPVSWV 907

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=IEA

GO:0090280 "positive regulation of calcium ion import" evidence=IEA

GO:0070509 "calcium ion import" evidence=IEA

GO:0061045 "negative regulation of wound healing" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0042043 "neurexin family protein binding" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0010839 "negative regulation of keratinocyte proliferation" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005652 "nuclear lamina" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0001953 "negative regulation of cell-matrix adhesion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|J9NZ27 CASK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 191/281 (67%), Positives = 231/281 (82%)

Query:     1 MFQIISKDDHNWWQARKDNVA-GSAGLIPSPELQEWRTACSTIDKTKHEQ-VNCSIFGRX 58
             + QIISKDDHNWWQ + +N   G+AGLIPSPELQEWR AC  ++KTK EQ  +C+ FG+ 
Sbjct:   616 IIQIISKDDHNWWQGKLENSKNGTAGLIPSPELQEWRVACIAMEKTKQEQQASCTWFGKK 675

Query:    59 XXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
                        HNAVFDQLDLVTYEEVVKLP+FKRKTLVLLGAHGVGRRHIKNTLI K P
Sbjct:   676 KKQYKDKYLAKHNAVFDQLDLVTYEEVVKLPAFKRKTLVLLGAHGVGRRHIKNTLITKHP 735

Query:   119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178
             D++AYP+PHTTR P+ DEENG+ YYF+SHD+MM DI+ N+YLEYG+HEDAMYGTKLETIR
Sbjct:   736 DRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIR 795

Query:   179 RIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS 238
             +IH++G IAILDVEPQALK+LRT EF+PFVVFIAAP +    + D SL++L KESDIL+ 
Sbjct:   796 KIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDILQR 855

Query:   239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
              Y H+FDLT++NN+I+ETI  LE+A+E + T PQW+PVSW+
Sbjct:   856 TYAHYFDLTIINNEIDETIRHLEEAVELVCTAPQWVPVSWV 896

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|O14936 CASK "Peripheral plasma membrane protein CASK" [Homo sapiens (taxid:9606)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 191/281 (67%), Positives = 231/281 (82%)

Query:     1 MFQIISKDDHNWWQARKDNVA-GSAGLIPSPELQEWRTACSTIDKTKHEQ-VNCSIFGRX 58
             + QIISKDDHNWWQ + +N   G+AGLIPSPELQEWR AC  ++KTK EQ  +C+ FG+ 
Sbjct:   645 IIQIISKDDHNWWQGKLENSKNGTAGLIPSPELQEWRVACIAMEKTKQEQQASCTWFGKK 704

Query:    59 XXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
                        HNAVFDQLDLVTYEEVVKLP+FKRKTLVLLGAHGVGRRHIKNTLI K P
Sbjct:   705 KKQYKDKYLAKHNAVFDQLDLVTYEEVVKLPAFKRKTLVLLGAHGVGRRHIKNTLITKHP 764

Query:   119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178
             D++AYP+PHTTR P+ DEENG+ YYF+SHD+MM DI+ N+YLEYG+HEDAMYGTKLETIR
Sbjct:   765 DRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIR 824

Query:   179 RIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS 238
             +IH++G IAILDVEPQALK+LRT EF+PFVVFIAAP +    + D SL++L KESDIL+ 
Sbjct:   825 KIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDILQR 884

Query:   239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
              Y H+FDLT++NN+I+ETI  LE+A+E + T PQW+PVSW+
Sbjct:   885 TYAHYFDLTIINNEIDETIRHLEEAVELVCTAPQWVPVSWV 925

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0042043 "neurexin family protein binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0070509 "calcium ion import" evidence=IEA

GO:0090280 "positive regulation of calcium ion import" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0004385 "guanylate kinase activity" evidence=TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042734 "presynaptic membrane" evidence=ISS

GO:0060170 "cilium membrane" evidence=ISS

GO:0005604 "basement membrane" evidence=IDA

GO:0016363 "nuclear matrix" evidence=IDA

GO:0005652 "nuclear lamina" evidence=IDA

GO:0010839 "negative regulation of keratinocyte proliferation" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0005911 "cell-cell junction" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=IMP

GO:0061045 "negative regulation of wound healing" evidence=IMP

GO:0001953 "negative regulation of cell-matrix adhesion" evidence=IMP

UNIPROTKB|F1RX15 CASK "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 191/281 (67%), Positives = 231/281 (82%)

Query:     1 MFQIISKDDHNWWQARKDNVA-GSAGLIPSPELQEWRTACSTIDKTKHEQ-VNCSIFGRX 58
             + QIISKDDHNWWQ + +N   G+AGLIPSPELQEWR AC  ++KTK EQ  +C+ FG+ 
Sbjct:   518 IIQIISKDDHNWWQGKLENSKNGTAGLIPSPELQEWRVACIAMEKTKQEQQASCTWFGKK 577

Query:    59 XXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
                        HNAVFDQLDLVTYEEVVKLP+FKRKTLVLLGAHGVGRRHIKNTLI K P
Sbjct:   578 KKQYKDKYLAKHNAVFDQLDLVTYEEVVKLPAFKRKTLVLLGAHGVGRRHIKNTLITKHP 637

Query:   119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178
             D++AYP+PHTTR P+ DEENG+ YYF+SHD+MM DI+ N+YLEYG+HEDAMYGTKLETIR
Sbjct:   638 DRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIR 697

Query:   179 RIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS 238
             +IH++G IAILDVEPQALK+LRT EF+PFVVFIAAP +    + D SL++L KESDIL+ 
Sbjct:   698 KIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDILQR 757

Query:   239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
              Y H+FDLT++NN+I+ETI  LE+A+E + T PQW+PVSW+
Sbjct:   758 TYAHYFDLTIINNEIDETIRHLEEAVELVCTAPQWVPVSWV 798

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|K7GSB2 CASK "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 191/281 (67%), Positives = 231/281 (82%)

Query:     1 MFQIISKDDHNWWQARKDNVA-GSAGLIPSPELQEWRTACSTIDKTKHEQ-VNCSIFGRX 58
             + QIISKDDHNWWQ + +N   G+AGLIPSPELQEWR AC  ++KTK EQ  +C+ FG+ 
Sbjct:   627 IIQIISKDDHNWWQGKLENSKNGTAGLIPSPELQEWRVACIAMEKTKQEQQASCTWFGKK 686

Query:    59 XXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
                        HNAVFDQLDLVTYEEVVKLP+FKRKTLVLLGAHGVGRRHIKNTLI K P
Sbjct:   687 KKQYKDKYLAKHNAVFDQLDLVTYEEVVKLPAFKRKTLVLLGAHGVGRRHIKNTLITKHP 746

Query:   119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178
             D++AYP+PHTTR P+ DEENG+ YYF+SHD+MM DI+ N+YLEYG+HEDAMYGTKLETIR
Sbjct:   747 DRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIR 806

Query:   179 RIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS 238
             +IH++G IAILDVEPQALK+LRT EF+PFVVFIAAP +    + D SL++L KESDIL+ 
Sbjct:   807 KIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDILQR 866

Query:   239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
              Y H+FDLT++NN+I+ETI  LE+A+E + T PQW+PVSW+
Sbjct:   867 TYAHYFDLTIINNEIDETIRHLEEAVELVCTAPQWVPVSWV 907

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

MGI|MGI:1309489 Cask "calcium/calmodulin-dependent serine protein kinase (MAGUK family)" [Mus musculus (taxid:10090)]

 Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
 Identities = 190/281 (67%), Positives = 231/281 (82%)

Query:     1 MFQIISKDDHNWWQARKDNVA-GSAGLIPSPELQEWRTACSTIDKTKHEQ-VNCSIFGRX 58
             + QIISKDDHNWWQ + +N   G+AGLIPSPELQEWR AC  ++KTK EQ  +C+ FG+ 
Sbjct:   645 IIQIISKDDHNWWQGKLENSKNGTAGLIPSPELQEWRVACIAMEKTKQEQQASCTWFGKK 704

Query:    59 XXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
                        HNAVFDQLDLVTYEEVVKLP+FKRKTLVLLGAHGVGRRHIKNTLI K P
Sbjct:   705 KKQYKDKYLAKHNAVFDQLDLVTYEEVVKLPAFKRKTLVLLGAHGVGRRHIKNTLITKHP 764

Query:   119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178
             D++AYP+PHTTR P+ DEENG+ YYF+SHD+MM DI+ N+YLEYG+HEDAMYGTKLETIR
Sbjct:   765 DRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIR 824

Query:   179 RIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS 238
             +IH++G IAILDVEPQALK+LRT EF+PFVVFIAAP +    + D SL++L KESD+L+ 
Sbjct:   825 KIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDVLQR 884

Query:   239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
              Y H+FDLT++NN+I+ETI  LE+A+E + T PQW+PVSW+
Sbjct:   885 TYAHYFDLTIINNEIDETIRHLEEAVELVCTAPQWVPVSWV 925

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001953 "negative regulation of cell-matrix adhesion" evidence=ISO

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005652 "nuclear lamina" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005911 "cell-cell junction" evidence=ISO;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0010839 "negative regulation of keratinocyte proliferation" evidence=ISO

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0016363 "nuclear matrix" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0042043 "neurexin family protein binding" evidence=ISO;IDA

GO:0042734 "presynaptic membrane" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045202 "synapse" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0060170 "cilium membrane" evidence=ISO

GO:0061045 "negative regulation of wound healing" evidence=ISO

GO:0070509 "calcium ion import" evidence=IMP

GO:0090280 "positive regulation of calcium ion import" evidence=IDA

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=ISO

GO:0097060 "synaptic membrane" evidence=ISO

UNIPROTKB|D4A8M2 Cask "Peripheral plasma membrane protein CASK" [Rattus norvegicus (taxid:10116)]

 Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
 Identities = 189/281 (67%), Positives = 231/281 (82%)

Query:     1 MFQIISKDDHNWWQARKDNVA-GSAGLIPSPELQEWRTACSTIDKTKHEQ-VNCSIFGRX 58
             + QIISKDDHNWWQ + +N   G+AGLIPSPELQEWR AC  ++KTK EQ  +C+ FG+ 
Sbjct:   639 IIQIISKDDHNWWQGKLENSKNGTAGLIPSPELQEWRVACIAMEKTKQEQQASCTWFGKK 698

Query:    59 XXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
                        HNAVFDQLDLVTYEEVVKLP+FKRKTLVLLGAHGVGRRHIKNTLI K P
Sbjct:   699 KKQYKDKYLAKHNAVFDQLDLVTYEEVVKLPAFKRKTLVLLGAHGVGRRHIKNTLITKHP 758

Query:   119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178
             +++AYP+PHTTR P+ DEENG+ YYF+SHD+MM DI+ N+YLEYG+HEDAMYGTKLETIR
Sbjct:   759 ERFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIR 818

Query:   179 RIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS 238
             +IH++G IAILDVEPQALK+LRT EF+PFVVFIAAP +    + D SL++L KESD+L+ 
Sbjct:   819 KIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDVLQR 878

Query:   239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
              Y H+FDLT++NN+I+ETI  LE+A+E + T PQW+PVSW+
Sbjct:   879 TYAHYFDLTIINNEIDETIRHLEEAVELVCTAPQWVPVSWV 919

GO:0001953 "negative regulation of cell-matrix adhesion" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005652 "nuclear lamina" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0010839 "negative regulation of keratinocyte proliferation" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0042043 "neurexin family protein binding" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0061045 "negative regulation of wound healing" evidence=IEA

GO:0070509 "calcium ion import" evidence=IEA

GO:0090280 "positive regulation of calcium ion import" evidence=IEA

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=IEA

UNIPROTKB|E1BWL4 CASK "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 190/281 (67%), Positives = 230/281 (81%)

Query:     1 MFQIISKDDHNWWQARKDNVA-GSAGLIPSPELQEWRTACSTIDKTKHEQ-VNCSIFGRX 58
             + QIISKDDHNWWQ + +N   G+AGLIPSPELQEWR AC  ++KTK EQ  +C+ FG+ 
Sbjct:   639 IIQIISKDDHNWWQGKLENSKNGTAGLIPSPELQEWRVACIAMEKTKQEQQASCTWFGKK 698

Query:    59 XXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
                        HNAVFDQLDLVTYEEVVKLP+FKRKTLVLLGAHGVGRRHIKNTLI K P
Sbjct:   699 KKQYKDKYLAKHNAVFDQLDLVTYEEVVKLPAFKRKTLVLLGAHGVGRRHIKNTLITKHP 758

Query:   119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178
             D++AYP+PHTTR P+ DEENG+ YYF+SHD+MM DI+ N+YLEYG+HEDAMYGTKLETIR
Sbjct:   759 DRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIR 818

Query:   179 RIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS 238
             +IH++G IAILDVEPQALK+LRT EF+PFVVFIAAP +    + D SL++L KES+IL+ 
Sbjct:   819 KIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGINEDESLQRLQKESEILQR 878

Query:   239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
              Y H+FDLT++NN+I+ETI  LE+AIE + T  QW+PVSW+
Sbjct:   879 TYAHYFDLTIINNEIDETIRHLEEAIELVCTASQWVPVSWV 919

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001953 "negative regulation of cell-matrix adhesion" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005652 "nuclear lamina" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0010839 "negative regulation of keratinocyte proliferation" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0042043 "neurexin family protein binding" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0061045 "negative regulation of wound healing" evidence=IEA

GO:0070509 "calcium ion import" evidence=IEA

GO:0090280 "positive regulation of calcium ion import" evidence=IEA

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=IEA

UNIPROTKB|E2RLG1 CASK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 997 (356.0 bits), Expect = 1.7e-100, P = 1.7e-100
 Identities = 186/281 (66%), Positives = 226/281 (80%)

Query:     1 MFQIISKDDHNWWQARKDNVA-GSAGLIPSPELQEWRTACSTIDKTKHEQ-VNCSIFGRX 58
             + QIISKDDHNWWQ + +N   G+AGLIPSPELQEWR AC  ++KTK EQ  +C+ FG+ 
Sbjct:   645 IIQIISKDDHNWWQGKLENSKNGTAGLIPSPELQEWRVACIAMEKTKQEQQASCTWFGKK 704

Query:    59 XXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
                        HNA     DLVTYEEVVKLP+FKRKTLVLLGAHGVGRRHIKNTLI K P
Sbjct:   705 KKQYKDKYLAKHNA-----DLVTYEEVVKLPAFKRKTLVLLGAHGVGRRHIKNTLITKHP 759

Query:   119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178
             D++AYP+PHTTR P+ DEENG+ YYF+SHD+MM DI+ N+YLEYG+HEDAMYGTKLETIR
Sbjct:   760 DRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIR 819

Query:   179 RIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS 238
             +IH++G IAILDVEPQALK+LRT EF+PFVVFIAAP +    + D SL++L KESDIL+ 
Sbjct:   820 KIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDILQR 879

Query:   239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWL 279
              Y H+FDLT++NN+I+ETI  LE+A+E + T PQW+PVSW+
Sbjct:   880 TYAHYFDLTIINNEIDETIRHLEEAVELVCTAPQWVPVSWV 920

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O14936	CSKP_HUMAN	2, ., 7, ., 1, 1, ., 1	0.7188	0.8454	0.3012	yes	N/A
Q62915	CSKP_RAT	2, ., 7, ., 1, 1, ., 1	0.6939	0.8303	0.3014	yes	N/A
Q24210	CSKP_DROME	2, ., 7, ., 1, 1, ., 1, 7	0.7844	0.8454	0.3106	yes	N/A
O70589	CSKP_MOUSE	2, ., 7, ., 1, 1, ., 1	0.7153	0.8454	0.3012	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	330
pfam00625	183	pfam00625, Guanylate_kin, Guanylate kinase	2e-66
smart00072	174	smart00072, GuKc, Guanylate kinase homologues	1e-53
cd00071	137	cd00071, GMPK, Guanosine monophosphate kinase (GMP	1e-28
TIGR03263	179	TIGR03263, guanyl_kin, guanylate kinase	2e-26
COG0194	191	COG0194, Gmk, Guanylate kinase [Nucleotide transpo	9e-26
PRK00300	205	PRK00300, gmk, guanylate kinase; Provisional	6e-22
PLN02772	398	PLN02772, PLN02772, guanylate kinase	2e-21
PRK14737	186	PRK14737, gmk, guanylate kinase; Provisional	3e-15
cd12081	62	cd12081, SH3_CASK, Src Homology 3 domain of Calciu	7e-13
cd12035	62	cd12035, SH3_MPP1-like, Src Homology 3 domain of M	2e-12
cd12080	62	cd12080, SH3_MPP1, Src Homology 3 domain of Membra	2e-09
cd11862	61	cd11862, SH3_MPP, Src Homology 3 domain of Membran	3e-09
PRK14738	206	PRK14738, gmk, guanylate kinase; Provisional	2e-07
cd12037	59	cd12037, SH3_MPP2, Src Homology 3 domain of Membra	2e-04
cd12038	61	cd12038, SH3_MPP6, Src Homology 3 domain of Membra	3e-04
cd12034	61	cd12034, SH3_MPP4, Src Homology 3 domain of Membra	5e-04
cd12036	63	cd12036, SH3_MPP5, Src Homology 3 domain of Membra	6e-04
cd12033	61	cd12033, SH3_MPP7, Src Homology 3 domain of Membra	0.003

>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase

 Score =  206 bits (526), Expect = 2e-66
 Identities = 73/183 (39%), Positives = 110/183 (60%), Gaps = 7/183 (3%)

Query: 92  KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM 151
           +R+ +VL G  GVG+ HIK  L++++P+K+ Y V HTTR PR  E +G+ Y+F+S +EM 
Sbjct: 1   QRRPIVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEME 60

Query: 152 SDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFI 211
           +DI+AN++LEY       YGT  E I +I + GKI ILDV+ Q +K LR  E SP  VFI
Sbjct: 61  NDISANEFLEYAEFNGNYYGTSKEAIEQIAESGKICILDVDIQGVKQLRKAELSPISVFI 120

Query: 212 AAPQLQNL-----SDYDGSLEKLAKESDILKSAYEHF--FDLTVVNNDIEETIGILEKAI 264
             P L+ L            EK+ K  +  +  ++H+  FD  +VN+D++E    L++ +
Sbjct: 121 KPPSLKVLQRRLKRRGTEQEEKINKRMEAAEQEFQHYALFDYIIVNDDLDEAYKKLKEIL 180

Query: 265 EEL 267
           E  
Sbjct: 181 EAE 183

Length = 183

>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues

 Score =  173 bits (441), Expect = 1e-53
 Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 9/175 (5%)

Query: 102 HGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLE 161
            GVG+  +   LI + PD +   V HTTR PR  E NG  Y+F+S +E   DI +  +LE
Sbjct: 1   SGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSKEEFEDDIKSGLFLE 60

Query: 162 YGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNL-- 219
           +G +E   YGT  ETIR++ ++GK  +LD++PQ +K LR  +  P V+FIA P  + L  
Sbjct: 61  WGEYEGNYYGTSKETIRQVAEKGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELER 120

Query: 220 ------SDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELH 268
                 ++    ++K    +      Y H FD  +VN+D+E+    L++ +E   
Sbjct: 121 RLRQRGTETSERIQKRLAAAQKEAQEY-HLFDYVIVNDDLEDAYEELKEILEAEQ 174

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. Length = 174

>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2

 Score =  107 bits (269), Expect = 1e-28
 Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 37/172 (21%)

Query: 96  LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
           +VL G  GVG+  +   L+ +F   + + V HTTR PR  E +G  Y+F+S +E    I 
Sbjct: 2   IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIE 61

Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQ 215
             ++LE+       YGT    +     EGKI IL+++ Q  + ++        +FI  P 
Sbjct: 62  NGEFLEWAEFHGNYYGTSKAAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP- 120

Query: 216 LQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEEL 267
                                        D  +VN+D       LEKA EEL
Sbjct: 121 -----------------------------DYVIVNDD-------LEKAYEEL 136

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. Length = 137

>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase

 Score =  102 bits (257), Expect = 2e-26
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 16/182 (8%)

Query: 96  LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
           +V+ G  G G+  +   L+ + P+   + +  TTR PR  E +G  Y+F+S +E    I 
Sbjct: 3   IVISGPSGAGKSTLVKALLEEDPNLK-FSISATTRKPRPGEVDGVDYFFVSKEEFEEMIK 61

Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSPFV-VFIAA 213
           A ++LE+       YGT    +      GK  +L+++ Q A ++ +   F   V +FI  
Sbjct: 62  AGEFLEWAEVHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKK--FPDAVSIFILP 119

Query: 214 PQLQNL--------SDYDGSLEK-LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAI 264
           P L+ L        +D +  +E+ LAK    +  A E  FD  +VN+D+E+ +  L+  I
Sbjct: 120 PSLEELERRLRKRGTDSEEVIERRLAKAKKEIAHADE--FDYVIVNDDLEKAVEELKSII 177

Query: 265 EE 266
             
Sbjct: 178 LA 179

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 179

>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and metabolism]

 Score =  101 bits (254), Expect = 9e-26
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 21/190 (11%)

Query: 92  KRKTLVLLGAHGVGRRHIKNTLINKF--PDKYAYPVPHTTRSPRSDEENGRAYYFISHDE 149
           K   +VL G  GVG    K+TL+      DK  + V  TTR PR  E +G  Y+F++ +E
Sbjct: 3   KGLLIVLSGPSGVG----KSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEE 58

Query: 150 MMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFV- 208
               I  +++LE+  +    YGT  E + +   EGK  ILD++ Q    ++       V 
Sbjct: 59  FEELIERDEFLEWAEYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKKK-MPNAVS 117

Query: 209 VFIAAPQLQNLSDYDGSLEKLAKESDI-----LKSAYEHF-----FDLTVVNNDIEETIG 258
           +FI  P   +L + +  L+    +S+      L++A +       FD  +VN+D+E+ + 
Sbjct: 118 IFILPP---SLEELERRLKGRGTDSEEVIARRLENAKKEISHADEFDYVIVNDDLEKALE 174

Query: 259 ILEKAIEELH 268
            L+  I    
Sbjct: 175 ELKSIILAER 184

Length = 191

>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional

 Score = 91.3 bits (228), Expect = 6e-22
 Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 24/185 (12%)

Query: 96  LVLLGAHGVGRRHIKNTLIN---KFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMS 152
           +VL G  G G    K+TL+    +        V  TTR+PR  E +G  Y+F+S +E   
Sbjct: 8   IVLSGPSGAG----KSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEE 63

Query: 153 DIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSPFV-VF 210
            I   ++LE+       YGT    +      GK  +L+++ Q A ++ +       V +F
Sbjct: 64  MIENGEFLEWAEVFGNYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKKK--MPDAVSIF 121

Query: 211 IAAPQLQNLSDYDGSLEKLAKESD--I---LKSAYE-----HFFDLTVVNNDIEETIGIL 260
           I  P L+ L      L     +S+  I   L  A E       +D  +VN+D++  +  L
Sbjct: 122 ILPPSLEELER---RLRGRGTDSEEVIARRLAKAREEIAHASEYDYVIVNDDLDTALEEL 178

Query: 261 EKAIE 265
           +  I 
Sbjct: 179 KAIIR 183

Length = 205

>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase

 Score = 93.7 bits (233), Expect = 2e-21
 Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 10/179 (5%)

Query: 94  KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153
           K +V+ G  GVG+  + + L+ +FP  + + V HTTR+PR  E++G  Y+F     M  +
Sbjct: 136 KPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKE 195

Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAA 213
           I   ++LE+ +    +YGT +E +  +   GK  ILD++ Q  + +R        +FI  
Sbjct: 196 IKDGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICP 255

Query: 214 PQLQNLSDY-----DGSLEKLAK-----ESDILKSAYEHFFDLTVVNNDIEETIGILEK 262
           P ++ L          + E++ K     E+++ +      FD  + N+++EE    L+K
Sbjct: 256 PSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKSSGIFDHILYNDNLEECYKNLKK 314

Length = 398

>gnl|CDD|173199 PRK14737, gmk, guanylate kinase; Provisional

 Score = 72.7 bits (178), Expect = 3e-15
 Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 11/180 (6%)

Query: 94  KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153
           K  ++    G G+  I   L+ + PD   + +  TTR+PR  +E G+ Y+F++ +E    
Sbjct: 5   KLFIISSVAGGGKSTIIQALLEEHPDFL-FSISCTTRAPRPGDEEGKTYFFLTIEEFKKG 63

Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFV-VFIA 212
           IA  ++LE+    D  YGT    I    +EG+ AI+D++ Q  KI++       V +FI 
Sbjct: 64  IADGEFLEWAEVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIE 123

Query: 213 APQ--------LQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAI 264
            P         +   +D + S+EK   E+ I++    + FD  ++N+D+E+ I  LE  I
Sbjct: 124 PPSEEEWEERLIHRGTDSEESIEKRI-ENGIIELDEANEFDYKIINDDLEDAIADLEAII 182

Length = 186

>gnl|CDD|213014 cd12081, SH3_CASK, Src Homology 3 domain of Calcium/calmodulin-dependent Serine protein Kinase

 Score = 62.6 bits (152), Expect = 7e-13
 Identities = 24/33 (72%), Positives = 28/33 (84%), Gaps = 1/33 (3%)

Query: 1  MFQIISKDDHNWWQARKDN-VAGSAGLIPSPEL 32
          + QIISKDDHNWWQA+ +N   G+AGLIPSPEL
Sbjct: 30 ILQIISKDDHNWWQAKLENSKNGTAGLIPSPEL 62

CASK is a scaffolding protein that is highly expressed in the mammalian nervous system and plays roles in synaptic protein targeting, neural development, and gene expression regulation. CASK interacts with many different binding partners including parkin, neurexin, syndecans, calcium channel proteins, caskin, among others, to perform specific functions in different subcellular locations. Disruption of the CASK gene in mice results in neonatal lethality while mutations in the human gene have been associated with X-linked mental retardation. Drosophila CASK is associated with both pre- and postsynaptic membranes and is crucial in synaptic transmission and vesicle cycling. CASK contains an N-terminal calmodulin-dependent kinase (CaMK)-like domain, two L27 domains, followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212968 cd12035, SH3_MPP1-like, Src Homology 3 domain of Membrane Protein, Palmitoylated 1 (or MAGUK p55 subfamily member 1)-like proteins

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 24/31 (77%), Positives = 25/31 (80%), Gaps = 1/31 (3%)

Query: 3  QIISKDDHNWWQARKDNVA-GSAGLIPSPEL 32
          QIISKDDHNWWQARK   +   AGLIPSPEL
Sbjct: 32 QIISKDDHNWWQARKPGASKEPAGLIPSPEL 62

This subfamily includes MPP1, CASK (Calcium/calmodulin-dependent Serine protein Kinase), Caenorhabditis elegans lin-2, and similar proteins. MPP1 and CASK are scaffolding proteins from the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). In addition, they also have the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. CASK and lin-2 also contain an N-terminal calmodulin-dependent kinase (CaMK)-like domain and two L27 domains. MPP1 is ubiquitously-expressed and plays roles in regulating neutrophil polarity, cell shape, hair cell development, and neural development and patterning of the retina. CASK is highly expressed in the mammalian nervous system and plays roles in synaptic protein targeting, neural development, and gene expression regulation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|213013 cd12080, SH3_MPP1, Src Homology 3 domain of Membrane Protein, Palmitoylated 1 (or MAGUK p55 subfamily member 1)

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 1/33 (3%)

Query: 1  MFQIISKDDHNWWQAR-KDNVAGSAGLIPSPEL 32
          + QII+KDD NWWQ R + +   SAGLIPSPEL
Sbjct: 30 IIQIINKDDSNWWQGRVEGSGEESAGLIPSPEL 62

MPP1, also called 55 kDa erythrocyte membrane protein (p55), is a ubiquitously-expressed scaffolding protein that plays roles in regulating neutrophil polarity, cell shape, hair cell development, and neural development and patterning of the retina. It was originally identified as an erythrocyte protein that stabilizes the actin cytoskeleton to the plasma membrane by forming a complex with 4.1R protein and glycophorin C. MPP1 is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains the three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212796 cd11862, SH3_MPP, Src Homology 3 domain of Membrane Protein, Palmitoylated (or MAGUK p55 subfamily member) proteins

 Score = 52.2 bits (126), Expect = 3e-09
 Identities = 18/30 (60%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 3  QIISKDDHNWWQARK-DNVAGSAGLIPSPE 31
          QI+++DD NWWQARK  +  G AGLIPS +
Sbjct: 32 QIVNQDDPNWWQARKVGDPNGRAGLIPSQD 61

The MPP/p55 subfamily of MAGUK (membrane-associated guanylate kinase) proteins includes at least eight vertebrate members (MPP1-7 and CASK), four Drosophila proteins (Stardust, Varicose, CASK and Skiff), and other similar proteins; they all contain one each of the core of three domains characteristic of MAGUK proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, most members except for MPP1 contain N-terminal L27 domains and some also contain a Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. CASK has an additional calmodulin-dependent kinase (CaMK)-like domain at the N-terminus. Members of this subfamily are scaffolding proteins that play important roles in regulating and establishing cell polarity, cell adhesion, and synaptic targeting and transmission, among others. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|237809 PRK14738, gmk, guanylate kinase; Provisional

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 26/180 (14%)

Query: 96  LVLLGAHGVGRRHIKNTLIN-----KFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEM 150
           +V+ G  GVG    K+ ++      K P  + + V  TTR  R  E +G  Y+F++ +E 
Sbjct: 16  VVISGPSGVG----KDAVLARMRERKLP--FHFVVTATTRPKRPGEIDGVDYHFVTPEEF 69

Query: 151 MSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSPFVV 209
              I+ N+ LE+       YG     +R+    G+  I+ V+ Q A  I R    + F +
Sbjct: 70  REMISQNELLEWAEVYGNYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVF-I 128

Query: 210 FIAAPQLQNLS---------DYDGSLEKLAKESDILKSAYEHFFDLTVVN--NDIEETIG 258
           F+A P +  L+           +    +LA     L+   E  FD  VVN  + ++E + 
Sbjct: 129 FLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQLPE--FDYVVVNPEDRLDEAVA 186

Length = 206

>gnl|CDD|212970 cd12037, SH3_MPP2, Src Homology 3 domain of Membrane Protein, Palmitoylated 2 (or MAGUK p55 subfamily member 2)

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 1  MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
          + QI++++D NWWQA      GSAGLIPS
Sbjct: 30 LLQIVNQEDPNWWQACHVE-GGSAGLIPS 57

MPP2 is a scaffolding protein that interacts with the non-receptor tyrosine kinase c-Src in epithelial cells to negatively regulate its activity and morphological function. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212971 cd12038, SH3_MPP6, Src Homology 3 domain of Membrane Protein, Palmitoylated 6 (or MAGUK p55 subfamily member 6)

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 1  MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
          + QI++++D NWWQA      GSAGLIPS
Sbjct: 30 ILQIVNREDPNWWQASHVKEGGSAGLIPS 58

MPP6, also called Veli-associated MAGUK 1 (VAM-1) or PALS2, is a scaffolding protein that binds to Veli-1, a homolog of Caenorhabditis Lin-7. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212967 cd12034, SH3_MPP4, Src Homology 3 domain of Membrane Protein, Palmitoylated 4 (or MAGUK p55 subfamily member 4)

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 1  MFQIISKDDHNWWQARKDNVAGS-AGLIPS 29
          + QI+ ++D  WWQARK +   + AGLIPS
Sbjct: 30 ILQIVDQNDSLWWQARKLSDLAACAGLIPS 59

MPP4, also called Disks Large homolog 6 (DLG6) or Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 5 protein (ALS2CR5), is a retina-specific scaffolding protein that plays a role in organizing presynaptic protein complexes in the photoreceptor synapse, where it localizes to the plasma membrane. It is required in the proper localization of calcium ATPases and for maintenance of calcium homeostasis. MPP4 is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212969 cd12036, SH3_MPP5, Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)

Query: 4  IISKDDHNWWQARKD---NVAGSAGLIPSPE 31
          +IS++D NWWQA ++   +    AGLIPS  
Sbjct: 33 VISQEDPNWWQAYREGEEDNQSLAGLIPSKS 63

MPP5, also called PALS1 (Protein associated with Lin7) or Nagie oko protein in zebrafish or Stardust in Drosophila, is a scaffolding protein which associates with Crumbs homolog 1 (CRB1), CRB2, or CRB3 through its PDZ domain and with PALS1-associated tight junction protein (PATJ) or multi-PDZ domain protein 1 (MUPP1) through its L27 domain. The resulting tri-protein complexes are core proteins of the Crumb complex, which localizes at tight junctions or subapical regions, and is involved in the maintenance of apical-basal polarity in epithelial cells and the morphogenesis and function of photoreceptor cells. MPP5 is critical for the proper stratification of the retina and is also expressed in T lymphocytes where it is important for TCR-mediated activation of NFkB. Drosophila Stardust exists in several isoforms, some of which show opposing functions in photoreceptor cells, which suggests that the relative ratio of different Crumbs complexes regulates photoreceptor homeostasis. MPP5 contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 63

>gnl|CDD|212966 cd12033, SH3_MPP7, Src Homology 3 domain of Membrane Protein, Palmitoylated 7 (or MAGUK p55 subfamily member 7)

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 1  MFQIISKDDHNWWQARKDNVAG-SAGLIPS 29
          + QI+S+DD  WWQA+ +  A   AGLIPS
Sbjct: 30 ILQIMSQDDATWWQAKHEGDANPRAGLIPS 59

MPP7 is a scaffolding protein that binds to DLG1 and promotes tight junction formation and epithelial cell polarity. Mutations in the MPP7 gene may be associated with the pathogenesis of diabetes and extreme bone mineral density. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
KOG0609|consensus	542		100.0
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	100.0
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	100.0
PRK14737	186	gmk guanylate kinase; Provisional	100.0
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	100.0
PLN02772	398	guanylate kinase	100.0
KOG0708|consensus	359		100.0
PRK14738	206	gmk guanylate kinase; Provisional	100.0
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	100.0
KOG0707|consensus	231		100.0
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.97
PRK00300	205	gmk guanylate kinase; Provisional	99.97
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.83
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.82
PRK08356	195	hypothetical protein; Provisional	99.79
COG3709	192	Uncharacterized component of phosphonate metabolis	99.71
KOG3580|consensus	1027		99.7
KOG3812|consensus	475		99.51
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	99.44
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.21
KOG0609|consensus	542		99.13
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	99.12
PRK04040	188	adenylate kinase; Provisional	98.98
PLN02840	421	tRNA dimethylallyltransferase	98.93
PRK00698	205	tmk thymidylate kinase; Validated	98.89
PRK06762	166	hypothetical protein; Provisional	98.77
PRK00098	298	GTPase RsgA; Reviewed	98.68
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.66
PRK05057	172	aroK shikimate kinase I; Reviewed	98.63
PRK00131	175	aroK shikimate kinase; Reviewed	98.63
PLN02748	468	tRNA dimethylallyltransferase	98.6
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.59
PRK13946	184	shikimate kinase; Provisional	98.53
PLN02165	334	adenylate isopentenyltransferase	98.48
PRK13947	171	shikimate kinase; Provisional	98.43
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	98.42
PRK13948	182	shikimate kinase; Provisional	98.4
PRK04182	180	cytidylate kinase; Provisional	98.39
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	98.38
PRK00889	175	adenylylsulfate kinase; Provisional	98.34
PRK01184	184	hypothetical protein; Provisional	98.32
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.31
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.3
PRK14530	215	adenylate kinase; Provisional	98.29
PRK08233	182	hypothetical protein; Provisional	98.28
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.27
PHA02530	300	pseT polynucleotide kinase; Provisional	98.27
PRK05541	176	adenylylsulfate kinase; Provisional	98.25
KOG1384|consensus	348		98.24
PRK13949	169	shikimate kinase; Provisional	98.18
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.18
PRK03731	171	aroL shikimate kinase II; Reviewed	98.16
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.14
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.12
PRK03846	198	adenylylsulfate kinase; Provisional	98.11
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.11
PRK05480	209	uridine/cytidine kinase; Provisional	98.11
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.1
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.08
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.08
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.06
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	98.0
PRK14532	188	adenylate kinase; Provisional	98.0
PRK03839	180	putative kinase; Provisional	97.98
PRK06696	223	uridine kinase; Validated	97.98
PLN02200	234	adenylate kinase family protein	97.97
PRK12339	197	2-phosphoglycerate kinase; Provisional	97.97
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.94
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.94
PRK14531	183	adenylate kinase; Provisional	97.9
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	97.9
PRK00625	173	shikimate kinase; Provisional	97.89
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.89
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	97.88
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	97.85
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	97.85
PLN02924	220	thymidylate kinase	97.84
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	97.8
PRK13975	196	thymidylate kinase; Provisional	97.79
PLN02199	303	shikimate kinase	97.78
PRK12298	390	obgE GTPase CgtA; Reviewed	97.77
PRK14731	208	coaE dephospho-CoA kinase; Provisional	97.77
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	97.76
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.75
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	97.74
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.74
PRK13976	209	thymidylate kinase; Provisional	97.71
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	97.69
PRK14730	195	coaE dephospho-CoA kinase; Provisional	97.68
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.68
PRK14527	191	adenylate kinase; Provisional	97.67
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	97.66
COG1162	301	Predicted GTPases [General function prediction onl	97.65
cd01896	233	DRG The developmentally regulated GTP-binding prot	97.65
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.64
PRK14732	196	coaE dephospho-CoA kinase; Provisional	97.63
PRK07261	171	topology modulation protein; Provisional	97.63
KOG0058|consensus	716		97.62
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.6
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.59
PRK04220	301	2-phosphoglycerate kinase; Provisional	97.59
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.57
PRK14733	204	coaE dephospho-CoA kinase; Provisional	97.57
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	97.55
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.54
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.54
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.53
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	97.53
PRK00279	215	adk adenylate kinase; Reviewed	97.5
PTZ00451	244	dephospho-CoA kinase; Provisional	97.5
COG1160	444	Predicted GTPases [General function prediction onl	97.49
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.49
PRK06761	282	hypothetical protein; Provisional	97.49
COG4639	168	Predicted kinase [General function prediction only	97.49
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	97.47
KOG3354|consensus	191		97.47
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.46
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	97.46
COG0486	454	ThdF Predicted GTPase [General function prediction	97.46
PLN02422	232	dephospho-CoA kinase	97.46
PRK00089	292	era GTPase Era; Reviewed	97.46
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.45
PRK06217	183	hypothetical protein; Validated	97.45
KOG1191|consensus	531		97.43
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.41
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	97.41
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.4
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	97.39
COG4988	559	CydD ABC-type transport system involved in cytochr	97.38
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.38
PRK13973	213	thymidylate kinase; Provisional	97.37
PRK12338	319	hypothetical protein; Provisional	97.37
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	97.34
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.33
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	97.32
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	97.31
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.31
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	97.3
PRK03003	472	GTP-binding protein Der; Reviewed	97.3
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	97.29
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.28
PRK13808	333	adenylate kinase; Provisional	97.28
PRK14734	200	coaE dephospho-CoA kinase; Provisional	97.28
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	97.27
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	97.27
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	97.27
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.27
PRK12288	347	GTPase RsgA; Reviewed	97.25
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	97.25
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	97.25
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	97.23
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	97.23
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.23
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	97.22
KOG0057|consensus	591		97.22
PRK02496	184	adk adenylate kinase; Provisional	97.22
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	97.21
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	97.2
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.19
PRK00023	225	cmk cytidylate kinase; Provisional	97.17
PRK09825	176	idnK D-gluconate kinase; Provisional	97.16
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	97.15
COG1159	298	Era GTPase [General function prediction only]	97.15
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	97.14
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	97.12
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	97.12
KOG0056|consensus	790		97.12
COG1160	444	Predicted GTPases [General function prediction onl	97.11
COG0218	200	Predicted GTPase [General function prediction only	97.11
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	97.11
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	97.1
KOG0055|consensus	1228		97.1
PRK07933	213	thymidylate kinase; Validated	97.1
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	97.09
PF00004	132	AAA: ATPase family associated with various cellula	97.08
COG1163	365	DRG Predicted GTPase [General function prediction	97.08
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	97.07
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	97.07
PRK14526	211	adenylate kinase; Provisional	97.07
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.06
PRK00093	435	GTP-binding protein Der; Reviewed	97.05
PRK12297	424	obgE GTPase CgtA; Reviewed	97.04
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.04
cd01881	176	Obg_like The Obg-like subfamily consists of five w	97.03
PRK12337	475	2-phosphoglycerate kinase; Provisional	97.02
PRK13974	212	thymidylate kinase; Provisional	97.02
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	97.02
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	97.01
PRK12296	500	obgE GTPase CgtA; Reviewed	97.01
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	96.99
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.99
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	96.99
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.99
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.98
PRK15494	339	era GTPase Era; Provisional	96.97
PLN02318	656	phosphoribulokinase/uridine kinase	96.96
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	96.96
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	96.95
PRK08118	167	topology modulation protein; Reviewed	96.93
PLN03232	1495	ABC transporter C family member; Provisional	96.92
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.91
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	96.91
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	96.9
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	96.89
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.88
smart00382	148	AAA ATPases associated with a variety of cellular	96.88
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	96.88
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.88
PRK09087	226	hypothetical protein; Validated	96.88
PLN02674	244	adenylate kinase	96.87
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	96.87
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	96.87
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	96.85
PRK12289	352	GTPase RsgA; Reviewed	96.85
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.85
PRK10522	547	multidrug transporter membrane component/ATP-bindi	96.84
PRK12299	335	obgE GTPase CgtA; Reviewed	96.84
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	96.83
KOG0055|consensus	1228		96.83
PLN03130	1622	ABC transporter C family member; Provisional	96.82
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	96.8
COG1084	346	Predicted GTPase [General function prediction only	96.79
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	96.79
cd04105	203	SR_beta Signal recognition particle receptor, beta	96.79
KOG1489|consensus	366		96.78
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	96.78
KOG0708|consensus	359		96.75
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.75
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	96.75
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	96.74
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	96.74
COG1127	263	Ttg2A ABC-type transport system involved in resist	96.73
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	96.72
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.7
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	96.69
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	96.69
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.69
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	96.67
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.64
cd00881	189	GTP_translation_factor GTP translation factor fami	96.64
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	96.64
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.63
PRK00093	435	GTP-binding protein Der; Reviewed	96.62
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	96.62
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.6
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.59
PRK06547	172	hypothetical protein; Provisional	96.58
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.58
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.56
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	96.55
PTZ00301	210	uridine kinase; Provisional	96.54
PTZ00243	1560	ABC transporter; Provisional	96.53
smart00178	184	SAR Sar1p-like members of the Ras-family of small	96.53
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.52
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	96.5
KOG3079|consensus	195		96.5
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	96.5
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.5
PRK04213	201	GTP-binding protein; Provisional	96.49
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	96.49
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	96.47
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.46
PRK14529	223	adenylate kinase; Provisional	96.43
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	96.42
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	96.42
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	96.39
COG4987	573	CydC ABC-type transport system involved in cytochr	96.39
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.37
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	96.36
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.35
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.34
PF13173	128	AAA_14: AAA domain	96.34
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.34
PLN03110	216	Rab GTPase; Provisional	96.33
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.33
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.32
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.31
PRK10865	857	protein disaggregation chaperone; Provisional	96.31
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	96.3
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	96.29
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.29
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.29
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	96.29
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	96.28
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.28
COG1100	219	GTPase SAR1 and related small G proteins [General	96.27
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.26
PRK06620	214	hypothetical protein; Validated	96.25
PRK14737	186	gmk guanylate kinase; Provisional	96.25
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	96.25
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	96.24
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	96.22
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	96.22
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	96.22
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	96.21
CHL00181	287	cbbX CbbX; Provisional	96.2
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.19
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	96.18
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.18
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.17
PLN02842	505	nucleotide kinase	96.17
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.17
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	96.17
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.16
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	96.16
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	96.16
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.15
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	96.15
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.15
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	96.14
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.14
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	96.14
PF05729	166	NACHT: NACHT domain	96.13
PTZ00088	229	adenylate kinase 1; Provisional	96.13
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.13
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.13
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	96.13
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.13
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.13
PLN02772	398	guanylate kinase	96.11
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	96.1
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.1
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	96.1
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	96.1
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	96.09
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.08
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.08
COG2884	223	FtsE Predicted ATPase involved in cell division [C	96.08
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.08
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.07
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.07
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	96.04
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.04
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	96.03
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	96.03
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.03
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	96.03
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	96.02
KOG0734|consensus	752		96.02
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.02
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.02
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.01
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	96.01
PRK14528	186	adenylate kinase; Provisional	96.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	95.99
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	95.99
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	95.98
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.98
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	95.97
COG0536	369	Obg Predicted GTPase [General function prediction	95.97
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.96
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	95.96
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	95.96
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	95.96
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	95.96
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	95.95
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	95.94
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	95.94
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	95.94
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	95.94
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	95.94
PLN02459	261	probable adenylate kinase	95.94
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	95.93
KOG3347|consensus	176		95.92
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.92
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.92
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	95.92
COG4525	259	TauB ABC-type taurine transport system, ATPase com	95.9
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.9
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	95.9
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.89
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	95.88
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	95.88
PTZ00258	390	GTP-binding protein; Provisional	95.88
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	95.88
PRK03003	472	GTP-binding protein Der; Reviewed	95.87
PRK15453	290	phosphoribulokinase; Provisional	95.87
KOG3877|consensus	393		95.87
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.86
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	95.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	95.86
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.85
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.85
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	95.85
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	95.85
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	95.84
cd03216	163	ABC_Carb_Monos_I This family represents the domain	95.84
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	95.84
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	95.83
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	95.83
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	95.83
PRK13796	365	GTPase YqeH; Provisional	95.83
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.83
cd03246	173	ABCC_Protease_Secretion This family represents the	95.82
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	95.82
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	95.82
cd03234	226	ABCG_White The White subfamily represents ABC tran	95.82
PRK10908	222	cell division protein FtsE; Provisional	95.82
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	95.8
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.8
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	95.8
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	95.79
PF09439	181	SRPRB: Signal recognition particle receptor beta s	95.79
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	95.79
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	95.79
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	95.79
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	95.79
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	95.79
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	95.78
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.78
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	95.78
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	95.78
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	95.77
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.77
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	95.77
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	95.77
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	95.76
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.76
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	95.76
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	95.75
COG1123	539	ATPase components of various ABC-type transport sy	95.75
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	95.75
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	95.75
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	95.74
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	95.74
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	95.73
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	95.73
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	95.73
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	95.73
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	95.73
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	95.72
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	95.72
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	95.72
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	95.72
COG4181	228	Predicted ABC-type transport system involved in ly	95.71
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	95.71
cd03215	182	ABC_Carb_Monos_II This family represents domain II	95.71
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.71
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	95.71
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	95.7
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	95.7
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.7
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	95.69
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	95.69
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	95.69
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	95.68
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	95.68
PRK07667	193	uridine kinase; Provisional	95.68
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	95.68
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	95.67
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	95.67
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	95.67
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	95.67
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	95.67
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	95.67
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	95.66
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	95.66
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	95.66
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	95.66
PRK13536	340	nodulation factor exporter subunit NodI; Provision	95.65
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	95.64
CHL00195	489	ycf46 Ycf46; Provisional	95.63
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	95.63
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	95.63
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	95.63
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	95.63
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	95.63
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	95.63
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	95.62
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	95.61
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	95.61
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	95.6
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	95.59
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	95.59
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	95.59
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	95.59
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	95.59
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	95.59
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	95.57
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	95.57
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	95.56
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	95.56
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	95.55
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	95.55
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	95.55
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	95.55
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	95.55
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	95.54
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	95.53
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	95.53
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	95.53
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	95.53
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.53
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	95.52
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	95.52
PRK13537	306	nodulation ABC transporter NodI; Provisional	95.52
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	95.51
PRK12377	248	putative replication protein; Provisional	95.51
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	95.51

>KOG0609|consensus

Probab=100.00  E-value=9.4e-84  Score=630.30  Aligned_cols=294  Identities=52%  Similarity=0.903  Sum_probs=262.3

Q ss_pred             CcEEEeCCCCCceeEEeCC--CCCCceeeCChhHHHHHHhhccccccccc-cccccccccccccccchhhhccccccCCc
Q psy933            1 MFQIISKDDHNWWQARKDN--VAGSAGLIPSPELQEWRTACSTIDKTKHE-QVNCSIFGRKKKLYKDKYLAKHNAVFDQL   77 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~--~~~~~GlIPS~~~~e~r~~~~~~~~~~~~-~~~~~~~~rk~k~~~~~~~~~~~~~~~~~   77 (330)
                      ||||+||+|+|||||++.+  .++.||||||+.+||||.++...+.++.. ...|.+++||+|.++.+|+.++++.++..
T Consensus       245 ILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qerr~a~~~~~~~~~~~~~~c~~l~kkkk~~~~~y~~~~~~~~d~~  324 (542)
T KOG0609|consen  245 ILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQERRVACLRREVSKEPEKTRCQRLSKKKKKKKSKYLGKHSAVFDQP  324 (542)
T ss_pred             eeeeccCCCcchhhhhcccCccccccccccCHHHHHHHHHHHhhhcccCCcCchhcccchhhhhhhhhhhhhcchhhhcc
Confidence            8999999999999999977  57999999999999999999877655332 34788888888877788999999999999


Q ss_pred             cccCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc
Q psy933           78 DLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN  157 (330)
Q Consensus        78 ~~~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~  157 (330)
                      +.++||||++|+++++|++||+||.|||...|.++|+..+|++|+.+||||||+||++|++|++|||||+++|++++.+|
T Consensus       325 ~~~tYEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~  404 (542)
T KOG0609|consen  325 ELLTYEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAG  404 (542)
T ss_pred             ccccHHHHhhhcccccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHH
Q psy933          158 QYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILK  237 (330)
Q Consensus       158 ~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie  237 (330)
                      +|+|||+|.+|+|||++++|+.++++||+||||+.|++++.||+++|+||||||+||+++.++..       .+. .   
T Consensus       405 ~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~-------r~~-~---  473 (542)
T KOG0609|consen  405 KFLEYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRAL-------RKV-A---  473 (542)
T ss_pred             CceecCcchhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHH-------hhh-c---
Confidence            99999999999999999999999999999999999999999999999999999999998765321       111 1   


Q ss_pred             hhccccceEEEecC-CHHHHHHHHHHHHHHhcCCCccccccccccchhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHH
Q psy933          238 SAYEHFFDLTVVNN-DIEETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEE  316 (330)
Q Consensus       238 ~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~~~~~~WvP~sw~~~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~  316 (330)
                            +...+++- .-+   .+|++                |+++|++||++||||||++|||+|||.||++|+++|++
T Consensus       474 ------~~~~~~~~~~~d---~~Lq~----------------i~~eS~~ie~~yghyfD~iIvN~dld~t~~eL~~~iek  528 (542)
T KOG0609|consen  474 ------VMSTIVAKQFTD---EDLQE----------------IIDESARIEQQYGHYFDLIIVNSDLDKTFRELKTAIEK  528 (542)
T ss_pred             ------cccccccccCCH---HHHHH----------------HHHHHHHHHHHhhhheeEEEEcCcHHHHHHHHHHHHHH
Confidence                  11113332 112   12222                35679999999999999999999999999999999999


Q ss_pred             hcCCCceeecccCC
Q psy933          317 LHTTPQWIPVSWVY  330 (330)
Q Consensus       317 ~~~~~qWvp~~w~~  330 (330)
                      |++||||||+||||
T Consensus       529 l~tepqWVPvsWv~  542 (542)
T KOG0609|consen  529 LRTEPQWVPVSWVY  542 (542)
T ss_pred             hccCCceeeeeccC
Confidence            99999999999996

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=9.9e-47  Score=330.10  Aligned_cols=172  Identities=28%  Similarity=0.492  Sum_probs=160.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      ++.++||+||||||||||.++|.+.+  .|..+|++|||+||+||++|+||||||+++|++++++|+||||++|.||+||
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG   80 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG   80 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence            56899999999999999999999998  7999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHH-HHHHHHHHHHHhhccc
Q psy933          172 TKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSL-EKLAKESDILKSAYEH  242 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~-~rl~~~~~~ie~~~~~  242 (330)
                      |+...|+.++++|+.+|||++.+|++++|+.....+.|||.|||+++|+        ++++.+ +||.++..+|.  +..
T Consensus        81 T~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~--~~~  158 (191)
T COG0194          81 TSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEIS--HAD  158 (191)
T ss_pred             CcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH--HHH
Confidence            9999999999999999999999999999999999999999999999986        345555 57888888875  356


Q ss_pred             cceEEEecCCHHHHHHHHHHHHHHh
Q psy933          243 FFDLTVVNNDIEETIGILEKAIEEL  267 (330)
Q Consensus       243 ~fD~vI~N~dle~a~~~L~~~i~~~  267 (330)
                      .||++|+|||++.|+++|+.+|...
T Consensus       159 ~fdyvivNdd~e~a~~~l~~ii~ae  183 (191)
T COG0194         159 EFDYVIVNDDLEKALEELKSIILAE  183 (191)
T ss_pred             hCCEEEECccHHHHHHHHHHHHHHH
Confidence            6999999999999999999998754

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=100.00  E-value=5.6e-46  Score=328.97  Aligned_cols=175  Identities=38%  Similarity=0.703  Sum_probs=155.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGT  172 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGt  172 (330)
                      +|||||+|||||||+||+++|++.+|++|..+++||||+||+||++|++|||||+++|+++++.|+|+||++|+|++|||
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt   81 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT   81 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC-----chHHHHHHHHHHHHHHhhcccc--ce
Q psy933          173 KLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD-----YDGSLEKLAKESDILKSAYEHF--FD  245 (330)
Q Consensus       173 s~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~-----~~e~~~rl~~~~~~ie~~~~~~--fD  245 (330)
                      +.++|+.++++|++|||+++++|++.|++.+++|++|||+|||.+.|++     ..+..+.+.+...+++..+.++  ||
T Consensus        82 ~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~~~fd  161 (183)
T PF00625_consen   82 SKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKEFEHYNEFD  161 (183)
T ss_dssp             EHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHGGGGGSS
T ss_pred             ccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHHHhHhhcCC
Confidence            9999999999999999999999999999999999999999999888752     1223344555555555566666  99


Q ss_pred             EEEecCCHHHHHHHHHHHHHHh
Q psy933          246 LTVVNNDIEETIGILEKAIEEL  267 (330)
Q Consensus       246 ~vI~N~dle~a~~~L~~~i~~~  267 (330)
                      ++|+|+++++|+++|.++|++.
T Consensus       162 ~vi~n~~le~~~~~l~~ii~~~  183 (183)
T PF00625_consen  162 YVIVNDDLEEAVKELKEIIEQE  183 (183)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHhC
Confidence            9999999999999999999863

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK14737 gmk guanylate kinase; Provisional

Probab=100.00  E-value=2.1e-44  Score=320.70  Aligned_cols=171  Identities=29%  Similarity=0.555  Sum_probs=153.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      .+++|||+|||||||+||+++|++.+|+ +..+++||||+||+||++|+||||||+++|++++++|.|+||++|+||+||
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~-~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG   81 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPD-FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG   81 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCc-cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence            3579999999999999999999999986 678899999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCC-EEEEEccCcccccc--------CchHHHHH-HHHHHHHHHhhcc
Q psy933          172 TKLETIRRIHQEGKIAILDVEPQALKILRTGEFSP-FVVFIAAPQLQNLS--------DYDGSLEK-LAKESDILKSAYE  241 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p-~vIfI~pps~~~l~--------~~~e~~~r-l~~~~~~ie~~~~  241 (330)
                      |+.++|+.++++|++||+|++++|++.|+.....+ ++|||.|||.+.++        ..++++++ |..+.  .+..+.
T Consensus        82 t~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~--~e~~~~  159 (186)
T PRK14737         82 TPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGI--IELDEA  159 (186)
T ss_pred             CcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHH--HHHhhh
Confidence            99999999999999999999999999999976665 89999999988764        23455654 44432  455678


Q ss_pred             ccceEEEecCCHHHHHHHHHHHHH
Q psy933          242 HFFDLTVVNNDIEETIGILEKAIE  265 (330)
Q Consensus       242 ~~fD~vI~N~dle~a~~~L~~~i~  265 (330)
                      +.||++|+|+|+++++++|..+|.
T Consensus       160 ~~~D~vI~N~dle~a~~ql~~ii~  183 (186)
T PRK14737        160 NEFDYKIINDDLEDAIADLEAIIC  183 (186)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHh
Confidence            999999999999999999999885

>smart00072 GuKc Guanylate kinase homologues

Probab=100.00  E-value=1.7e-43  Score=313.72  Aligned_cols=174  Identities=37%  Similarity=0.670  Sum_probs=158.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGT  172 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGt  172 (330)
                      +|+|||+|||||||+||+++|++.+|+.|..+++||||+||+||.+|+||+|+|+++|+++++.|.|+||+++.||+|||
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt   81 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT   81 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence            58999999999999999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHHHHHHHHHHHHHhhccccc
Q psy933          173 KLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSLEKLAKESDILKSAYEHFF  244 (330)
Q Consensus       173 s~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~~rl~~~~~~ie~~~~~~f  244 (330)
                      ++++|++++++|++||||++++|+++|++..++|++|||.|||.+.|+        +.++.+++....+++....+ ++|
T Consensus        82 ~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~-~~f  160 (184)
T smart00072       82 SKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEY-HLF  160 (184)
T ss_pred             CHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh-ccC
Confidence            999999999999999999999999999999999999999999988775        23455644333445444455 889


Q ss_pred             eEEEecCCHHHHHHHHHHHHHHh
Q psy933          245 DLTVVNNDIEETIGILEKAIEEL  267 (330)
Q Consensus       245 D~vI~N~dle~a~~~L~~~i~~~  267 (330)
                      |++|+|+|+++|+++|+++|+..
T Consensus       161 d~~I~n~~l~~~~~~l~~~i~~~  183 (184)
T smart00072      161 DYVIVNDDLEDAYEELKEILEAE  183 (184)
T ss_pred             CEEEECcCHHHHHHHHHHHHHhc
Confidence            99999999999999999999864

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PLN02772 guanylate kinase

Probab=100.00  E-value=2.6e-42  Score=334.70  Aligned_cols=189  Identities=27%  Similarity=0.519  Sum_probs=170.9

Q ss_pred             cCceeeecccC----CCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHh
Q psy933           80 VTYEEVVKLPS----FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA  155 (330)
Q Consensus        80 ~~Ye~V~~~~~----~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~  155 (330)
                      +.-|||+++++    ..+++|||+|||||||+||+++|++.+|..|.++++||||+||++|++|++|||+++++|+++++
T Consensus       118 ~~~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~  197 (398)
T PLN02772        118 LLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIK  197 (398)
T ss_pred             cccceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHH
Confidence            34688998862    36789999999999999999999999998899999999999999999999999999999999999


Q ss_pred             ccceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHH-
Q psy933          156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSL-  226 (330)
Q Consensus       156 ~~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~-  226 (330)
                      +|.|+||++++||+|||++++|+.++++|++|||++|++|++.|++..+.+++|||.||++++|+        +.++++ 
T Consensus       198 ~g~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~  277 (398)
T PLN02772        198 DGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKRLRARGTETEEQIQ  277 (398)
T ss_pred             hCccceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999998899999999999998875        234555 


Q ss_pred             HHHHHHHHHHHh-hccccceEEEecCCHHHHHHHHHHHHHHhc
Q psy933          227 EKLAKESDILKS-AYEHFFDLTVVNNDIEETIGILEKAIEELH  268 (330)
Q Consensus       227 ~rl~~~~~~ie~-~~~~~fD~vI~N~dle~a~~~L~~~i~~~~  268 (330)
                      +||..+..+|+. .+.++||++|+|+|+++|+++|+++|....
T Consensus       278 kRL~~A~~Ei~~~~~~~~fD~vIvNDdLe~A~~~L~~iL~~~~  320 (398)
T PLN02772        278 KRLRNAEAELEQGKSSGIFDHILYNDNLEECYKNLKKLLGLDG  320 (398)
T ss_pred             HHHHHHHHHHhhccccCCCCEEEECCCHHHHHHHHHHHHhhcC
Confidence            567666566763 467899999999999999999999997554

>KOG0708|consensus

Probab=100.00  E-value=3e-38  Score=300.01  Aligned_cols=253  Identities=26%  Similarity=0.506  Sum_probs=211.8

Q ss_pred             CcEEEeCCCCCceeEEeC---CCCCCceeeCChhHHHHHHhhccccccccccccccccccccccccchhh----hccccc
Q psy933            1 MFQIISKDDHNWWQARKD---NVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYL----AKHNAV   73 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~---~~~~~~GlIPS~~~~e~r~~~~~~~~~~~~~~~~~~~~rk~k~~~~~~~----~~~~~~   73 (330)
                      |+|+++..|..|||||+.   +.....|+|||+...++|......    ..  .+ .++|+++..+.+..    ...+..
T Consensus        95 i~~~~~~~~~e~~~~r~~s~~~~~~~~~~~~~~~~~~rr~r~r~k----~~--~f-~~~~~~~~~~s~d~~~~~~~~~~~  167 (359)
T KOG0708|consen   95 ILHLISRSDDEWWQARHVSPRGEEKDVGLVPSKSRRARRVRLRLK----RD--SF-NSGRDFPFLLSKDGLDMSSDENEL  167 (359)
T ss_pred             hhhccccccHHHHHhhccCCCcccccccccccccccccccccccc----cc--cc-cccCCcccccCccccccccccccc
Confidence            689999999999999993   456779999999877765432111    00  00 01122221111110    122233


Q ss_pred             cCCccccCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhH
Q psy933           74 FDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD  153 (330)
Q Consensus        74 ~~~~~~~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~  153 (330)
                      .+...+++||.|.++.....|||+|+||.   |.-|...|+.++|++|..|++||||+.              +++|+++
T Consensus       168 ~~e~~~lsY~~V~~~~~~~~RPVlilg~~---~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~eme~~  230 (359)
T KOG0708|consen  168 GKELSLLSYELVERLDSNYLRPVLILGPL---LDRLLDNLVNEFPDKFKSCLPETLRPS--------------REEMERD  230 (359)
T ss_pred             ccccccccchhhhhhhccccCceEeccch---HHHHHHHHHHhhhccccccchhhhccc--------------HHHhhhh
Confidence            34456889999999998889999999999   999999999999999999999999985              6789999


Q ss_pred             HhccceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC-----chHHHHH
Q psy933          154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD-----YDGSLEK  228 (330)
Q Consensus       154 i~~~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~-----~~e~~~r  228 (330)
                      ++.+.||+++++.|++|||+..+|+++.++|+|||||++..|+++|+...++||+|||+|.|.+.+++     +.+..++
T Consensus       231 ~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyPIvIfIr~ks~~~i~e~~~~~t~~~ake  310 (359)
T KOG0708|consen  231 SKEETFIDAGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYPIVIFIRVKSKKQIKERNLKITGEQAKE  310 (359)
T ss_pred             cccCceeeecccCCCcceehHHHHHHHhcCCCceEEecCcchHHHHHhcceeceEEEEEechHHHHHHHhcccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988764     3456678


Q ss_pred             HHHHHHHHHhhccccceEEEecCCHHHHHHHHHHHHHHhcCCCcccccc
Q psy933          229 LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS  277 (330)
Q Consensus       229 l~~~~~~ie~~~~~~fD~vI~N~dle~a~~~L~~~i~~~~~~~~WvP~s  277 (330)
                      +++++.++|++|..+|..+|.-++++++|.+++.+|+.+|....|||+.
T Consensus       311 ~~e~a~klEqe~~~~~t~vv~~~s~e~i~~qvk~~I~~Eq~k~iWVp~~  359 (359)
T KOG0708|consen  311 LLERARKLEQELDRYFTLVVQGGSLEELLSQVKDIIEDEQKKVIWVPAK  359 (359)
T ss_pred             HHHHHHHhHhhhhhceEEEEecccHHHHHHHHHHHHHHhhCCeEeeeCC
Confidence            9999999999999999999999999999999999999999999999974

>PRK14738 gmk guanylate kinase; Provisional

Probab=100.00  E-value=9.5e-34  Score=255.86  Aligned_cols=175  Identities=24%  Similarity=0.377  Sum_probs=151.6

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcc
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAM  169 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~  169 (330)
                      ++.+++|||+||||||||||++.|.+..+ .|.++++||||+||++|.+|++|||||+++|++++.+|.|+||+++.||+
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~   88 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY   88 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence            45678999999999999999999987765 69999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHH-HHHHHHHHHHHhhc
Q psy933          170 YGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSL-EKLAKESDILKSAY  240 (330)
Q Consensus       170 YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~-~rl~~~~~~ie~~~  240 (330)
                      |||+.++|+.++++|++||++++.+|+..|+...+.+++||+.||+.+.|.        +..+++ +|+.....++..  
T Consensus        89 YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~--  166 (206)
T PRK14738         89 YGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQ--  166 (206)
T ss_pred             ecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc--
Confidence            999999999999999999999999999999988878899999999976543        122344 455555444432  


Q ss_pred             cccceEEEecC--CHHHHHHHHHHHHHHh
Q psy933          241 EHFFDLTVVNN--DIEETIGILEKAIEEL  267 (330)
Q Consensus       241 ~~~fD~vI~N~--dle~a~~~L~~~i~~~  267 (330)
                      ...||++++|.  ++++++++|.++|...
T Consensus       167 ~~~~~~~iId~~~~~e~v~~~i~~~l~~~  195 (206)
T PRK14738        167 LPEFDYVVVNPEDRLDEAVAQIMAIISAE  195 (206)
T ss_pred             ccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            24479998884  8999999999999764

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=100.00  E-value=5.1e-33  Score=235.87  Aligned_cols=136  Identities=32%  Similarity=0.599  Sum_probs=132.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccccH
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKL  174 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts~  174 (330)
                      +|+|+||||+|||||++.|++.++..|..+++||||+|+++|.+|++|+|++.++|.+++.++.|++++++.||+||++.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~   80 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK   80 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence            58999999999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhhccccceEEEecCCHH
Q psy933          175 ETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIE  254 (330)
Q Consensus       175 ~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~~~~~fD~vI~N~dle  254 (330)
                      ++|++++++|++||++++++|+++|+..+++|++|||.||                              |++|+|++++
T Consensus        81 ~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~------------------------------~~~~~~~~~~  130 (137)
T cd00071          81 AAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP------------------------------DYVIVNDDLE  130 (137)
T ss_pred             HHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeEEEEEECC------------------------------CeEEeCCCHH
Confidence            9999999999999999999999999999999999999997                              9999999999


Q ss_pred             HHHHHH
Q psy933          255 ETIGIL  260 (330)
Q Consensus       255 ~a~~~L  260 (330)
                      +++++|
T Consensus       131 ~~~~~~  136 (137)
T cd00071         131 KAYEEL  136 (137)
T ss_pred             HHHHhh
Confidence            999887

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>KOG0707|consensus

Probab=100.00  E-value=7.5e-34  Score=255.97  Aligned_cols=176  Identities=30%  Similarity=0.560  Sum_probs=155.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      ..++|||.||+|+||+||.++|++.+|..|+++++||||.||.+|++|.+|||+++++|+.|+..+.|+||.++.||+||
T Consensus        36 ~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yG  115 (231)
T KOG0707|consen   36 DFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYG  115 (231)
T ss_pred             CCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCC
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHH-HHHHHHHHHHHh-hcc
Q psy933          172 TKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSL-EKLAKESDILKS-AYE  241 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~-~rl~~~~~~ie~-~~~  241 (330)
                      |++++++++...|+.|++|++.+|++.++...++++.||+.||+...+.        +.++++ +|+..+.++++. .-.
T Consensus       116 tsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~~~~  195 (231)
T KOG0707|consen  116 TSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEILENS  195 (231)
T ss_pred             chHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHhhhhhhccccCC
Confidence            9999999999999999999999999999999999999999999987664        234444 556533333321 123


Q ss_pred             ccceEEEec-CCHHHHHHHHHHHHHHh
Q psy933          242 HFFDLTVVN-NDIEETIGILEKAIEEL  267 (330)
Q Consensus       242 ~~fD~vI~N-~dle~a~~~L~~~i~~~  267 (330)
                      ..||++|+| +++++|+++|..++...
T Consensus       196 g~~d~~~~ns~~lee~~kel~~~~~~~  222 (231)
T KOG0707|consen  196 GSFDLVIVNSDRLEEAYKELEIFISSD  222 (231)
T ss_pred             ccccceecCCCchhhhhhhhhhhhhHH
Confidence            569999999 89999999999887543

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.97  E-value=3.2e-30  Score=226.35  Aligned_cols=170  Identities=28%  Similarity=0.506  Sum_probs=150.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGT  172 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGt  172 (330)
                      +++|+|+||+|||||||++.|++.++. +...+++|||+|+.||.+|.+|+|++.++|.+++..+.|++++++.+++||+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~-~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   79 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPN-LKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGT   79 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCcc-ccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCC
Confidence            468999999999999999999998885 7788999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC--------chHHH-HHHHHHHHHHHhhcccc
Q psy933          173 KLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD--------YDGSL-EKLAKESDILKSAYEHF  243 (330)
Q Consensus       173 s~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~--------~~e~~-~rl~~~~~~ie~~~~~~  243 (330)
                      +.+.|+.++++|++||+|+++.+++.++.....|+.||+.||+.+.+++        .++.+ +++......+  .+.+.
T Consensus        80 ~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~--~~~~~  157 (180)
T TIGR03263        80 PKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEI--AHADE  157 (180)
T ss_pred             cHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--hcccc
Confidence            9999999999999999999999999999998889999999998776641        33445 3454443333  46788


Q ss_pred             ceEEEecCCHHHHHHHHHHHHH
Q psy933          244 FDLTVVNNDIEETIGILEKAIE  265 (330)
Q Consensus       244 fD~vI~N~dle~a~~~L~~~i~  265 (330)
                      ||++|+|+|+++++++|++++.
T Consensus       158 ~d~~i~n~~~~~~~~~l~~~~~  179 (180)
T TIGR03263       158 FDYVIVNDDLEKAVEELKSIIL  179 (180)
T ss_pred             CcEEEECCCHHHHHHHHHHHHh
Confidence            9999999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.97  E-value=1.7e-29  Score=226.32  Aligned_cols=174  Identities=25%  Similarity=0.463  Sum_probs=154.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      +++.|+|+||||||||||++.|+..+| .|...++||||+|+.||++|.+|+|++.++|.+++.++.|++++++.++.||
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~   82 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG   82 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence            357999999999999999999999988 7899999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC--------chHHHH-HHHHHHHHHHhhccc
Q psy933          172 TKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD--------YDGSLE-KLAKESDILKSAYEH  242 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~--------~~e~~~-rl~~~~~~ie~~~~~  242 (330)
                      ++..+|+.++++|++||+|+++++...+++....+++||+.||+.+.+++        .++.++ |+......+  .+.+
T Consensus        83 ~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~--~~~~  160 (205)
T PRK00300         83 TPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEI--AHAS  160 (205)
T ss_pred             CcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HhHH
Confidence            99999999999999999999999999999988889999999998766641        334443 444433333  3567


Q ss_pred             cceEEEecCCHHHHHHHHHHHHHHhc
Q psy933          243 FFDLTVVNNDIEETIGILEKAIEELH  268 (330)
Q Consensus       243 ~fD~vI~N~dle~a~~~L~~~i~~~~  268 (330)
                      .||++|+|+++++++.+|..+++...
T Consensus       161 ~~d~vi~n~~~e~~~~~l~~il~~~~  186 (205)
T PRK00300        161 EYDYVIVNDDLDTALEELKAIIRAER  186 (205)
T ss_pred             hCCEEEECCCHHHHHHHHHHHHHHHH
Confidence            79999999999999999999998873

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.83  E-value=4.2e-20  Score=163.93  Aligned_cols=169  Identities=15%  Similarity=0.193  Sum_probs=126.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      ++..|+|+||||||||||++.|....+..|......+||+++.+   +.+|+|++.++|.+++..+.|.++..+.||+||
T Consensus         1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg   77 (186)
T PRK10078          1 MGKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAG---SENHIALSEQEFFTRAGQNLFALSWHANGLYYG   77 (186)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchh---HHhheeEcHHHHHHHHHCCchhhHHHHhCCccC
Confidence            35789999999999999999998876545777778889987654   567999999999999999999988899999999


Q ss_pred             ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCC-EEEEEccCccccccC--------chHHHH-HHHHHHHHHHhhcc
Q psy933          172 TKLETIRRIHQEGKIAILDVEPQALKILRTGEFSP-FVVFIAAPQLQNLSD--------YDGSLE-KLAKESDILKSAYE  241 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p-~vIfI~pps~~~l~~--------~~e~~~-rl~~~~~~ie~~~~  241 (330)
                      |+. +++..++.|+.+|++........++.....+ .+||+.+| .+.+.+        ..++++ |+..+     ..| 
T Consensus        78 ~~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s-~e~l~~RL~~R~~~~~~~i~~rl~r~-----~~~-  149 (186)
T PRK10078         78 VGI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVS-PEILRQRLENRGRENASEINARLARA-----ARY-  149 (186)
T ss_pred             CcH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHHhCCCCHHHHHHHHHHh-----hhh-
Confidence            999 5999999999999887776666777664444 46677654 444421        122232 23111     112 


Q ss_pred             ccceEE-EecC-CHHHHHHHHHHHHHHhcCCC
Q psy933          242 HFFDLT-VVNN-DIEETIGILEKAIEELHTTP  271 (330)
Q Consensus       242 ~~fD~v-I~N~-dle~a~~~L~~~i~~~~~~~  271 (330)
                      ..+|++ |.|+ ++++++++|..++..-+.+.
T Consensus       150 ~~ad~~vi~~~~s~ee~~~~i~~~l~~~~~~~  181 (186)
T PRK10078        150 QPQDCHTLNNDGSLRQSVDTLLTLLHLSQKEK  181 (186)
T ss_pred             ccCCEEEEeCCCCHHHHHHHHHHHHhhcCccc
Confidence            246854 4444 69999999999998766543

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.82  E-value=3.8e-19  Score=156.13  Aligned_cols=163  Identities=17%  Similarity=0.232  Sum_probs=126.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCC--CccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPD--KYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~--~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      +.++|+||||||||||++.|....+.  .+.+..++|||+++   .+|.+|+|++.++|..++..+.|.++.++.+++||
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   78 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG   78 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence            57999999999999999999887653  24566889999864   46899999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC--------chHHH-HHHHHHHHHHHhhcc-
Q psy933          172 TKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD--------YDGSL-EKLAKESDILKSAYE-  241 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~--------~~e~~-~rl~~~~~~ie~~~~-  241 (330)
                      ++. .+...+++|+.+|++.+......++......++||+.+| .+.+.+        ..+.+ +++...     ..|. 
T Consensus        79 ~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~Rl~~R~~~~~~~~~~rl~~~-----~~~~~  151 (179)
T TIGR02322        79 IPA-EIDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITAS-PDVLAQRLAARGRESREEIEERLARS-----ARFAA  151 (179)
T ss_pred             ChH-HHHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHH-----hhccc
Confidence            997 588888999999999998888888776556789999865 344321        12223 233211     1222 


Q ss_pred             ccceEE-EecC-CHHHHHHHHHHHHHH
Q psy933          242 HFFDLT-VVNN-DIEETIGILEKAIEE  266 (330)
Q Consensus       242 ~~fD~v-I~N~-dle~a~~~L~~~i~~  266 (330)
                      ..+|++ |.|+ ++++++++|.+++.+
T Consensus       152 ~~~~~~vi~~~~~~ee~~~~i~~~l~~  178 (179)
T TIGR02322       152 APADVTTIDNSGSLEVAGETLLRLLRK  178 (179)
T ss_pred             ccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence            456777 6665 899999999988754

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK08356 hypothetical protein; Provisional

Probab=99.79  E-value=1.9e-19  Score=160.94  Aligned_cols=169  Identities=14%  Similarity=0.196  Sum_probs=119.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTK  173 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts  173 (330)
                      ..|+|+||+||||||+++.|. .+  .|. .+++|+|.++..+.+|.+|+|++...|..++..+.|+++|++.++.||++
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~-~~--g~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~   81 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFE-EK--GFC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED   81 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HC--CCc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence            578999999999999999994 43  566 89999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHHHhCCeEEEEeCHHHHHHHHh----cCCCCEEEEEccCcccc---cc----C------chHHHHHHHHHHHHH
Q psy933          174 LETIRRIHQEGKIAILDVEPQALKILRT----GEFSPFVVFIAAPQLQN---LS----D------YDGSLEKLAKESDIL  236 (330)
Q Consensus       174 ~~~i~~v~~~gk~~vldv~~~~v~~L~~----~~~~p~vIfI~pps~~~---l~----~------~~e~~~rl~~~~~~i  236 (330)
                      . -++.+++..+.+. .+..+|++.+.+    ......+|||.+|....   |.    +      ..+++.++..+...+
T Consensus        82 ~-~~~~~~~~~~~~~-~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l  159 (195)
T PRK08356         82 I-LIRLAVDKKRNCK-NIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKL  159 (195)
T ss_pred             H-HHHHHHHHhccCC-eEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHh
Confidence            4 2222332222111 122234443332    12235889998875321   21    1      223345554433322


Q ss_pred             --HhhccccceEEEecC-CHHHHHHHHHHHHHHhc
Q psy933          237 --KSAYEHFFDLTVVNN-DIEETIGILEKAIEELH  268 (330)
Q Consensus       237 --e~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~~  268 (330)
                        ...+...+|++|+|+ +++++.++|..++..+.
T Consensus       160 ~~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~~~  194 (195)
T PRK08356        160 YHTTKLKDKADFVIVNEGTLEELRKKVEEILRELS  194 (195)
T ss_pred             hhhhhHHHhCcEEEECCCCHHHHHHHHHHHHHHhc
Confidence              122347899999995 99999999999998764

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=99.71  E-value=2.8e-16  Score=135.03  Aligned_cols=168  Identities=16%  Similarity=0.212  Sum_probs=137.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCCCC--ccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCc
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFPDK--YAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDA  168 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~~--f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~  168 (330)
                      ++++.|+++||||+||+||+..+...++..  |.++-.+.|||...|   |.|+.-+|..+|.++-.+|.|--..+.+|.
T Consensus         3 ~~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~EdH~avs~~eF~~~a~~g~FAlsWqAhGL   79 (192)
T COG3709           3 FMGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GEDHDALSEAEFNTRAGQGAFALSWQAHGL   79 (192)
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCC---cccccccCHHHHHHHhhcCceeEEehhcCc
Confidence            367999999999999999999988887775  888888999987666   567889999999999999999999999999


Q ss_pred             cccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHH-HHHHHHHHHHHhh
Q psy933          169 MYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSL-EKLAKESDILKSA  239 (330)
Q Consensus       169 ~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~-~rl~~~~~~ie~~  239 (330)
                      +||++. +|..-++.|.++|.+.+...+..++..+..-.+|.|..+ ++.|.        |+.|++ .||.+++...   
T Consensus        80 ~Ygip~-eId~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~-p~VLaqRL~~RGREs~eeI~aRL~R~a~~~---  154 (192)
T COG3709          80 SYGIPA-EIDLWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITAS-PEVLAQRLAERGRESREEILARLARAARYT---  154 (192)
T ss_pred             cccCch-hHHHHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecC-HHHHHHHHHHhccCCHHHHHHHHHhhcccc---
Confidence            999986 588899999999999999999999998877777777653 44553        455555 5677664422   


Q ss_pred             ccccceE-EEecC-CHHHHHHHHHHHHHHh
Q psy933          240 YEHFFDL-TVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       240 ~~~~fD~-vI~N~-dle~a~~~L~~~i~~~  267 (330)
                       ..-.|. +|.|+ .++.|.++|...+.+.
T Consensus       155 -~~~~dv~~idNsG~l~~ag~~ll~~l~~~  183 (192)
T COG3709         155 -AGPGDVTTIDNSGELEDAGERLLALLHQD  183 (192)
T ss_pred             -cCCCCeEEEcCCCcHHHHHHHHHHHHHhh
Confidence             134665 57777 9999999999988754

>KOG3580|consensus

Probab=99.70  E-value=8.3e-17  Score=159.87  Aligned_cols=233  Identities=24%  Similarity=0.337  Sum_probs=164.1

Q ss_pred             CceeEEeCCC---CCCceeeCChhHHHHHHhhcccccccccccc-----cccccc-ccc-cccchhhhccccccCCcccc
Q psy933           11 NWWQARKDNV---AGSAGLIPSPELQEWRTACSTIDKTKHEQVN-----CSIFGR-KKK-LYKDKYLAKHNAVFDQLDLV   80 (330)
Q Consensus        11 ~WWQA~~~~~---~~~~GlIPS~~~~e~r~~~~~~~~~~~~~~~-----~~~~~r-k~k-~~~~~~~~~~~~~~~~~~~~   80 (330)
                      +-|-|-+.|.   ....|+||.+.+.|+-.+.+...++.....+     .+-+++ .|| ..|+.  ...+...-+...+
T Consensus       541 G~WLAvRiG~dlrE~ErGiIPNksRAEQlASvq~aqr~~agGdRAdFWR~RGlRsg~KknlrkSR--EDLsA~~vqtkfP  618 (1027)
T KOG3580|consen  541 GNWLAVRIGNDLRELERGIIPNKSRAEQLASVQNAQRDNAGGDRADFWRMRGLRSGVKKNLRKSR--EDLSAVVVQTKFP  618 (1027)
T ss_pred             cceEEEeecccHHHHhcccCCCccHHHHHHHHHhhccccccchHHHHHHHhhhhhhhhhhhhhhh--hhhhhceecccCC
Confidence            3466666554   5678999999999986655443222211000     000111 111 11111  1112222344578


Q ss_pred             CceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcccee
Q psy933           81 TYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYL  160 (330)
Q Consensus        81 ~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fl  160 (330)
                      .||.|+.-.....|||||+||-   -+--+.+|..+.||.|..+-+.    ||..   |-+             ....+ 
T Consensus       619 aYERVvLREAgFkRPVvifGPi---ADiAmeKLa~E~PD~fqiAkte----prda---g~~-------------~stg~-  674 (1027)
T KOG3580|consen  619 AYERVVLREAGFKRPVVIFGPI---ADIAMEKLANELPDWFQIAKTE----PRDA---GSE-------------KSTGV-  674 (1027)
T ss_pred             chhhhhhhhhcccCceEEeccH---HHHHHHHHhhhCcchhhhhccc----cccC---Ccc-------------cccce-
Confidence            9999998877667999999998   6778889999999988766321    1111   100             00011 


Q ss_pred             eEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHHHHHHHH
Q psy933          161 EYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSLEKLAKE  232 (330)
Q Consensus       161 e~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~~rl~~~  232 (330)
                                 +.+..|+.++++.||++|||.|.|+.+|.....+|||||+.|.|..-++        .+....++|+..
T Consensus       675 -----------irL~TvrqiieqDKHALLDVTP~AvdrLNY~QwypIVvff~PdSrqgvktmRqrL~P~Sr~SsRkLy~~  743 (1027)
T KOG3580|consen  675 -----------IRLNTVRQIIEQDKHALLDVTPKAVDRLNYTQWYPIVVFFNPDSRQGVKTMRQRLAPTSRKSSRKLYDQ  743 (1027)
T ss_pred             -----------EEehhhHHHHhcccchhhccCHHHHhhhccceeeeEEEEeCCcchHHHHHHHHHhCcccchhHHHHHHH
Confidence                       3467899999999999999999999999999999999999999876554        234456789999


Q ss_pred             HHHHHhhccccceEEEec-CCHHHHHHHHHHHHHHhcCCCccccccccc
Q psy933          233 SDILKSAYEHFFDLTVVN-NDIEETIGILEKAIEELHTTPQWIPVSWLA  280 (330)
Q Consensus       233 ~~~ie~~~~~~fD~vI~N-~dle~a~~~L~~~i~~~~~~~~WvP~sw~~  280 (330)
                      +.++.....|+|.++|.- ..-+..|..|+++|++.|+++.||-..-+.
T Consensus       744 a~KL~K~~~HLFTaTInLNs~nD~Wyg~LK~~iq~QQ~~~vWvsEgk~d  792 (1027)
T KOG3580|consen  744 ANKLKKTCAHLFTATINLNSANDSWYGSLKDTIQHQQGEAVWVSEGKMD  792 (1027)
T ss_pred             HHHHhhhchhheEeeeccCCCChhHHHHHHHHHHHhcCceeEeeccccc
Confidence            999998899999999964 477889999999999999999999876553

>KOG3812|consensus

Probab=99.51  E-value=5.5e-14  Score=132.19  Aligned_cols=244  Identities=19%  Similarity=0.259  Sum_probs=142.7

Q ss_pred             cEEEeCCCCCceeEEeCCCCCCceeeCChhHHHHHHhhcccccccccc--ccccccccccccccchhhhccccccCCccc
Q psy933            2 FQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQ--VNCSIFGRKKKLYKDKYLAKHNAVFDQLDL   79 (330)
Q Consensus         2 L~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~~e~r~~~~~~~~~~~~~--~~~~~~~rk~k~~~~~~~~~~~~~~~~~~~   79 (330)
                      |||..+-+..||-+|.+.+++..|+|||+.+.|.-...... .++...  .+..-.+.++.+..+  .+++-.....+.+
T Consensus        90 lHIkeKynnDWWIGRlVkeg~e~gFiPsp~rLen~r~~~e~-~~~~~~n~ssl~~vg~r~stpp~--ta~~kd~~~~E~~  166 (475)
T KOG3812|consen   90 LHIKEKYNNDWWIGRLVKEGCEIGFIPSPVRLENIRLQQEQ-SSKSSGNSSSLGDVGSRRSTPPS--TADQKDKSITEHV  166 (475)
T ss_pred             eeehhhcccchhHHHHhhcCCccccccchHHHHHHHhhhhh-hcccCCCccccCCcccCCCCCCC--hhhhhhhhhcccC
Confidence            89999999999999998888999999999876642211111 111111  111111111111100  1111111123456


Q ss_pred             cCceeeecccCCCCCEEEEEcCCCcc--HHHH-HHHHHhhCCCCcccccccc--ccCC----CCcccCCeeEEEecccch
Q psy933           80 VTYEEVVKLPSFKRKTLVLLGAHGVG--RRHI-KNTLINKFPDKYAYPVPHT--TRSP----RSDEENGRAYYFISHDEM  150 (330)
Q Consensus        80 ~~Ye~V~~~~~~~~r~ivLvGpsGvG--KstL-~~~L~~~~p~~f~~~v~~T--TR~p----r~~E~~G~dy~fvs~~~f  150 (330)
                      ++|.-|-.|     |||||+|||--|  -|-+ -+.|......+|.+-++.|  |...    |.+-.++-..        
T Consensus       167 pPYdVVPSm-----RPvVLvGPsLkgyevTdmmqkAlfd~lkhrF~grisitrVtaDIslakrS~lnnp~k~--------  233 (475)
T KOG3812|consen  167 PPYDVVPSM-----RPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKR--------  233 (475)
T ss_pred             CccccCCCC-----CceEEecCccccccHHHHHHHHHHHHHHHhcCCceeEEEEeechhhhhhhhccCccce--------
Confidence            777765544     899999999655  4443 3556666666788666544  2211    1111122111        


Q ss_pred             hhHHhccceeeEEeecCccccccHHHHHHHH---HhCCeEEEEeCH-HHHHHHHhcCCCCEEEEEccCccccccCc----
Q psy933          151 MSDIAANQYLEYGTHEDAMYGTKLETIRRIH---QEGKIAILDVEP-QALKILRTGEFSPFVVFIAAPQLQNLSDY----  222 (330)
Q Consensus       151 ~~~i~~~~fle~~~~~g~~YGts~~~i~~v~---~~gk~~vldv~~-~~v~~L~~~~~~p~vIfI~pps~~~l~~~----  222 (330)
                             ..+|-..-. +...---..|+.++   .+-..+|||.+. .--.+|.+..+.||+|||+..|.+.|...    
T Consensus       234 -------~~~eRsn~R-sslaevqsEiErIfelarsLqLvvlDadtInhPaql~ktsLaPI~v~ikvSspKvLqrLirsr  305 (475)
T KOG3812|consen  234 -------AIIERSNTR-SSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLAKTSLAPIIVYIKVSSPKVLQRLIRSR  305 (475)
T ss_pred             -------eeeeeccch-hhHHHHHHHHHHHHHHHhhceEEEecCCcCCCHHHhccCCCcceEEEEEeCCHHHHHHHHHhc
Confidence                   112211000 00111123344444   455667788774 44567888899999999999888877521    


Q ss_pred             ----hHHHHHHHHHHHHHHhhccccceEEEecCCHHHHHHHHHHHHHHhcC
Q psy933          223 ----DGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHT  269 (330)
Q Consensus       223 ----~e~~~rl~~~~~~ie~~~~~~fD~vI~N~dle~a~~~L~~~i~~~~~  269 (330)
                          -..+.--..++++++|.....||.+|..+.|++||+.|.+.++....
T Consensus       306 Gksq~K~lnvq~va~~klaQc~~e~FdvildENqLedAcehla~yLEaYw~  356 (475)
T KOG3812|consen  306 GKSQSKHLNVQMVAADKLAQCPPEGFDVILDENQLEDACEHLAEYLEAYWR  356 (475)
T ss_pred             CchhhhhchHhhhhcchhhhCChhhhheeeccccHHHHHHHHHHHHHHHHh
Confidence                11122223456778888889999999999999999999999998643

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=99.44  E-value=6.4e-14  Score=133.92  Aligned_cols=90  Identities=20%  Similarity=0.282  Sum_probs=81.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCC--------ccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDK--------YAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG  163 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~--------f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~  163 (330)
                      ++++|+|+||+|||||+|+..|++.+...        +...+++||++|+++|.+|++|||++..++.+.+..+.|++++
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a   82 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA   82 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH
Confidence            45789999999999999999999987643        5666899999999999999999999999999999999999886


Q ss_pred             eecCccccccHHHHHHHHHhCCeEEEEe
Q psy933          164 THEDAMYGTKLETIRRIHQEGKIAILDV  191 (330)
Q Consensus       164 ~~~g~~YGts~~~i~~v~~~gk~~vldv  191 (330)
                                ...|++++++|+++|++-
T Consensus        83 ----------~~~i~~i~~~gk~pIlvG  100 (307)
T PRK00091         83 ----------LAAIADILARGKLPILVG  100 (307)
T ss_pred             ----------HHHHHHHHhCCCCEEEEC
Confidence                      788999999999999983

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.21  E-value=2.2e-11  Score=106.92  Aligned_cols=156  Identities=13%  Similarity=0.105  Sum_probs=91.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEe-cccchhh---HHh-ccceeeEEe-ec
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFI-SHDEMMS---DIA-ANQYLEYGT-HE  166 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fv-s~~~f~~---~i~-~~~fle~~~-~~  166 (330)
                      ++.|+|+|||||||||+++.|.+..+..|...              |+|+++. ....+..   .+. .+.+.++.+ ..
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~--------------~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHF--------------GVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEF   67 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCcccc--------------CccHHHHhcChhhcccccccccCccCCcccchHH
Confidence            57999999999999999999998876433211              3332222 1111110   011 111222222 34


Q ss_pred             CccccccHHHHHHHHHhCCeEEEEeCHHH---HH-HHHh-cCCCCEEEEEccCccccccCc----hHHHHHHHHHHHHHH
Q psy933          167 DAMYGTKLETIRRIHQEGKIAILDVEPQA---LK-ILRT-GEFSPFVVFIAAPQLQNLSDY----DGSLEKLAKESDILK  237 (330)
Q Consensus       167 g~~YGts~~~i~~v~~~gk~~vldv~~~~---v~-~L~~-~~~~p~vIfI~pps~~~l~~~----~e~~~rl~~~~~~ie  237 (330)
                      ++.|++....+...+++|..||+|....+   .+ .++. .....+.||+.+|. +.+.+.    .+...++........
T Consensus        68 ~~~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~-~~l~~R~~~R~~~~~~~~~~~~~~~  146 (175)
T cd00227          68 RLLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPG-EVAEGRETARGDRVPGQARKQARVV  146 (175)
T ss_pred             HHHHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCH-HHHHHHHHhcCCccchHHHHHHHHh
Confidence            57899999999999999999999975432   22 2222 22345678888874 444321    111122322211111


Q ss_pred             hhccccceEEEecC--CHHHHHHHHHHHH
Q psy933          238 SAYEHFFDLTVVNN--DIEETIGILEKAI  264 (330)
Q Consensus       238 ~~~~~~fD~vI~N~--dle~a~~~L~~~i  264 (330)
                       .-...+|++|.++  ++++++++|.+.|
T Consensus       147 -~~~~~~dl~iDts~~s~~e~a~~i~~~l  174 (175)
T cd00227         147 -HAGVEYDLEVDTTHKTPIECARAIAARV  174 (175)
T ss_pred             -cCCCcceEEEECCCCCHHHHHHHHHHhc
Confidence             1135689999887  7899988887654

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>KOG0609|consensus

Probab=99.13  E-value=3.8e-11  Score=119.39  Aligned_cols=129  Identities=31%  Similarity=0.501  Sum_probs=90.9

Q ss_pred             cccCCeeEEEecccchhhHHhccceeeEEeecCccccccHHHHHHHH-HhCCeEEEEeCHH---HHHHHHhcCCCCEEEE
Q psy933          135 DEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIH-QEGKIAILDVEPQ---ALKILRTGEFSPFVVF  210 (330)
Q Consensus       135 ~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts~~~i~~v~-~~gk~~vldv~~~---~v~~L~~~~~~p~vIf  210 (330)
                      ||-.| ++|-.+.+....-+..|+..--.        ....+++.+- ..=+..|+.+-|-   .+++++.....-.   
T Consensus       410 GEy~~-nlYGTs~dsVr~v~~~gKicvLd--------v~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~---  477 (542)
T KOG0609|consen  410 GEYEG-NLYGTSLDSVRNVIASGKICVLD--------VEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMST---  477 (542)
T ss_pred             Ccchh-ccccchHHHHHHHHHhCCEEEEe--------cCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhccccc---
Confidence            34443 46667788888888888754332        2233443322 2234556666554   4455554322111   


Q ss_pred             EccCccccccCchHHHHHHHHHHHHHHhhccccceEEEecCCHHHHHHHHHHHHHHhcCCCccccccccc
Q psy933          211 IAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWLA  280 (330)
Q Consensus       211 I~pps~~~l~~~~e~~~rl~~~~~~ie~~~~~~fD~vI~N~dle~a~~~L~~~i~~~~~~~~WvP~sw~~  280 (330)
                      +.     .....++++++|+++++.|++.|+||||++|+|+|+++|+++|+.+|++++++|||||++|++
T Consensus       478 ~~-----~~~~~d~~Lq~i~~eS~~ie~~yghyfD~iIvN~dld~t~~eL~~~iekl~tepqWVPvsWv~  542 (542)
T KOG0609|consen  478 IV-----AKQFTDEDLQEIIDESARIEQQYGHYFDLIIVNSDLDKTFRELKTAIEKLRTEPQWVPVSWVY  542 (542)
T ss_pred             cc-----cccCCHHHHHHHHHHHHHHHHHhhhheeEEEEcCcHHHHHHHHHHHHHHhccCCceeeeeccC
Confidence            11     122357889999999999999999999999999999999999999999999999999999985

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=99.12  E-value=4.6e-11  Score=113.12  Aligned_cols=97  Identities=21%  Similarity=0.247  Sum_probs=76.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCC--------ccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeec
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDK--------YAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHE  166 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~--------f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~  166 (330)
                      +|+|+||+|||||+|+.+|.+.++..        +...+++||++|+++|.+|++|||++.-++.....          -
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~----------v   70 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYS----------A   70 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEc----------H
Confidence            48999999999999999999987632        44457999999999999999999999665543221          1


Q ss_pred             CccccccHHHHHHHHHhCCeEEEEeCHHH-HHHHHh
Q psy933          167 DAMYGTKLETIRRIHQEGKIAILDVEPQA-LKILRT  201 (330)
Q Consensus       167 g~~YGts~~~i~~v~~~gk~~vldv~~~~-v~~L~~  201 (330)
                      +++|+.....|+++.++|+++|+.-...- ++.|-.
T Consensus        71 ~~f~~~a~~~i~~~~~~g~~pi~vGGTg~Yi~all~  106 (287)
T TIGR00174        71 ADFQTLALNAIADITARGKIPLLVGGTGLYLKALLE  106 (287)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHc
Confidence            56788999999999999999988654422 455544

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK04040 adenylate kinase; Provisional

Probab=98.98  E-value=5e-09  Score=93.53  Aligned_cols=148  Identities=18%  Similarity=0.242  Sum_probs=77.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchh-hHHhccceeeE-------Ee
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-SDIAANQYLEY-------GT  164 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~-~~i~~~~fle~-------~~  164 (330)
                      .+.|+|+|++||||||+++.|.+.++..+.                     +++..++. .......+...       ..
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~---------------------~~~~g~~~~~~a~~~g~~~~~d~~r~l~~   60 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYK---------------------IVNFGDVMLEVAKEEGLVEHRDEMRKLPP   60 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCe---------------------EEecchHHHHHHHHcCCCCCHHHHhhCCh
Confidence            368999999999999999999998752121                     12111111 11111111000       00


Q ss_pred             ecCccccccHHHHHHHH--HhCCeEEEEeCHH-----H------HHHHHhcCCCCEEEEEccCcccccc-----------
Q psy933          165 HEDAMYGTKLETIRRIH--QEGKIAILDVEPQ-----A------LKILRTGEFSPFVVFIAAPQLQNLS-----------  220 (330)
Q Consensus       165 ~~g~~YGts~~~i~~v~--~~gk~~vldv~~~-----~------v~~L~~~~~~p~vIfI~pps~~~l~-----------  220 (330)
                      .....++.  .+.+.+.  ..++.+|+|-+.-     |      ...++...+..+++|..||+ +.++           
T Consensus        61 ~~~~~~~~--~a~~~i~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~-~i~~Rrl~d~~R~R~  137 (188)
T PRK04040         61 EEQKELQR--EAAERIAEMAGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPD-EILMRRLRDETRRRD  137 (188)
T ss_pred             hhhHHHHH--HHHHHHHHhhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHH-HHHHHHhcccccCCC
Confidence            00001111  1222222  3456677776431     1      33445445555666666665 3332           


Q ss_pred             -CchHHHHHHHHHHHHHHh---hccccceEEEecCC--HHHHHHHHHHHH
Q psy933          221 -DYDGSLEKLAKESDILKS---AYEHFFDLTVVNND--IEETIGILEKAI  264 (330)
Q Consensus       221 -~~~e~~~rl~~~~~~ie~---~~~~~fD~vI~N~d--le~a~~~L~~~i  264 (330)
                       ++.+.+++..+.......   .+.+.|+++|+|++  +++|+++|.++|
T Consensus       138 ~es~e~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii  187 (188)
T PRK04040        138 VETEEDIEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL  187 (188)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence             123445443332222212   23466999999999  999999999887

>PLN02840 tRNA dimethylallyltransferase

Probab=98.93  E-value=6.5e-10  Score=110.01  Aligned_cols=90  Identities=14%  Similarity=0.239  Sum_probs=74.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCC--------ccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEe
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDK--------YAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGT  164 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~--------f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~  164 (330)
                      +++|+|+||+|||||||+..|.+.+...        +...++++|++|...|.+|+.||+++.-+..+....+.|.    
T Consensus        21 ~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~----   96 (421)
T PLN02840         21 EKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFF----   96 (421)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHH----
Confidence            3589999999999999999999987632        3445789999999999999999999988877655555554    


Q ss_pred             ecCccccccHHHHHHHHHhCCeEEEEeC
Q psy933          165 HEDAMYGTKLETIRRIHQEGKIAILDVE  192 (330)
Q Consensus       165 ~~g~~YGts~~~i~~v~~~gk~~vldv~  192 (330)
                            ......|+++.++|+++|+.-.
T Consensus        97 ------~~A~~~I~~i~~rgkiPIvVGG  118 (421)
T PLN02840         97 ------DDARRATQDILNRGRVPIVAGG  118 (421)
T ss_pred             ------HHHHHHHHHHHhcCCCEEEEcC
Confidence                  4458899999999999988654

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.89  E-value=9.3e-09  Score=91.52  Aligned_cols=162  Identities=15%  Similarity=0.122  Sum_probs=90.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhc--cceeeEEe---ecC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAA--NQYLEYGT---HED  167 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~--~~fle~~~---~~g  167 (330)
                      ++.|+|.||+||||||+++.|.+.+.. .+ ...++|+.|+ ++..|        +.|...+..  +.+..+..   +..
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~-~~-~~~~~~~~p~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~   71 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQ-QG-RDVVFTREPG-GTPLG--------EKLRELLLDPNEEMDDKTELLLFYA   71 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHH-cC-CceeEeeCCC-CChHH--------HHHHHHHhccccCCCHHHHHHHHHH
Confidence            578999999999999999999987642 22 3456777776 33332        344444431  22222221   224


Q ss_pred             ccccccHHHHHHHHHhCCeEEEEe---------------CHHHHHHHHhc---CC-CCEEEEEccCccc---cccCch--
Q psy933          168 AMYGTKLETIRRIHQEGKIAILDV---------------EPQALKILRTG---EF-SPFVVFIAAPQLQ---NLSDYD--  223 (330)
Q Consensus       168 ~~YGts~~~i~~v~~~gk~~vldv---------------~~~~v~~L~~~---~~-~p~vIfI~pps~~---~l~~~~--  223 (330)
                      +.|+.....+...+++|+++|+|=               +..-+..+...   .+ .-++||+..|.-.   .+....  
T Consensus        72 ~r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~  151 (205)
T PRK00698         72 ARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGEL  151 (205)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence            557777777777788899999982               12222233321   12 2367888776422   121110  


Q ss_pred             H--------HHHHHHHHHHHHHhhccccceEE-EecC-CHHHHHHHHHHHHHHh
Q psy933          224 G--------SLEKLAKESDILKSAYEHFFDLT-VVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       224 e--------~~~rl~~~~~~ie~~~~~~fD~v-I~N~-dle~a~~~L~~~i~~~  267 (330)
                      +        -.+++.+....+...+  .++.+ |.++ ++++..+++..+|.++
T Consensus       152 ~~~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~Id~~~~~e~v~~~i~~~i~~~  203 (205)
T PRK00698        152 DRIEQEGLDFFERVREGYLELAEKE--PERIVVIDASQSLEEVHEDILAVIKAW  203 (205)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhC--CCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            1        1123333233332211  13444 4444 8999999999988764

>PRK06762 hypothetical protein; Provisional

Probab=98.77  E-value=1.1e-07  Score=82.24  Aligned_cols=143  Identities=13%  Similarity=0.157  Sum_probs=79.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCc-cc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDA-MY  170 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~-~Y  170 (330)
                      |++.|+|+|++||||||+++.|.+.++.                     .+.+++.+.+...+..+    .. ..+. .+
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l~~---------------------~~~~i~~D~~r~~l~~~----~~-~~~~~~~   54 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERLGR---------------------GTLLVSQDVVRRDMLRV----KD-GPGNLSI   54 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEecHHHHHHHhccc----cC-CCCCcCH
Confidence            4578999999999999999999987642                     13344555554433211    00 0011 11


Q ss_pred             cccHHHHHHHHHhCCeEEEEeCH--H----HHHHHHhcCC-CCEEEEEccCcccccc---C-------chHHHHHHHHHH
Q psy933          171 GTKLETIRRIHQEGKIAILDVEP--Q----ALKILRTGEF-SPFVVFIAAPQLQNLS---D-------YDGSLEKLAKES  233 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~~--~----~v~~L~~~~~-~p~vIfI~pps~~~l~---~-------~~e~~~rl~~~~  233 (330)
                      -.-...++..++.|..+|+|-..  .    -++.|..... ...+||+.+|--..++   .       .++.++++.++.
T Consensus        55 ~~~~~~~~~~~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~  134 (166)
T PRK06762         55 DLIEQLVRYGLGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPH  134 (166)
T ss_pred             HHHHHHHHHHHhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhc
Confidence            11123344456779888887642  1    1445554433 3468899887322221   0       123333333332


Q ss_pred             HHHHhhccccceEEEecC--CHHHHHHHHHHHHH
Q psy933          234 DILKSAYEHFFDLTVVNN--DIEETIGILEKAIE  265 (330)
Q Consensus       234 ~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~  265 (330)
                      +.+     ..+|.+|+++  ++++.++++...+.
T Consensus       135 ~~~-----~~~~~~~~~~~~~~~~v~~~i~~~~~  163 (166)
T PRK06762        135 DTL-----GVIGETIFTDNLSLKDIFDAILTDIG  163 (166)
T ss_pred             CCc-----CCCCeEEecCCCCHHHHHHHHHHHhc
Confidence            222     3468888666  78888887776653

>PRK00098 GTPase RsgA; Reviewed

Probab=98.68  E-value=1.1e-08  Score=97.62  Aligned_cols=94  Identities=17%  Similarity=0.149  Sum_probs=72.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCcccccc-------ccccCCCCcccC------------CeeEEEecccchhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP-------HTTRSPRSDEEN------------GRAYYFISHDEMMS  152 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~-------~TTR~pr~~E~~------------G~dy~fvs~~~f~~  152 (330)
                      .+++++|+|+||||||||++.|+..... -...++       ||||.++..+.+            +.+|++++.+++..
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~-~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~  241 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLEL-KTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEH  241 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCC-CCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHH
Confidence            4679999999999999999999876553 344454       799988776665            45566777777776


Q ss_pred             HHhc-cceeeEEeecC-ccccccHHHHHHHHHhCCe
Q psy933          153 DIAA-NQYLEYGTHED-AMYGTKLETIRRIHQEGKI  186 (330)
Q Consensus       153 ~i~~-~~fle~~~~~g-~~YGts~~~i~~v~~~gk~  186 (330)
                      .+.. ..|.+...|.+ .+||++.++|++++++|++
T Consensus       242 ~f~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~g~i  277 (298)
T PRK00098        242 YFPEFRPLSGDCKFRNCTHLHEPGCAVKAAVEEGEI  277 (298)
T ss_pred             HHHHHHHHhCCCCCCCCcCCCCCCChHHHHHHcCCC
Confidence            5544 45666666666 5899999999999999973

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=98.66  E-value=1.4e-08  Score=96.93  Aligned_cols=98  Identities=15%  Similarity=0.211  Sum_probs=76.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC-------CccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEee
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD-------KYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTH  165 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~-------~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~  165 (330)
                      +++|+|+||+|||||.|+-.|++.+.+       .+..-++..|.+|...|..|+.||+++--+..+....+.|.+-+  
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a--   81 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEA--   81 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHH--
Confidence            358999999999999999999988432       12223778999999999999999999988777666666666544  


Q ss_pred             cCccccccHHHHHHHHHhCCeEEEEeCHHH-HHHHH
Q psy933          166 EDAMYGTKLETIRRIHQEGKIAILDVEPQA-LKILR  200 (330)
Q Consensus       166 ~g~~YGts~~~i~~v~~~gk~~vldv~~~~-v~~L~  200 (330)
                              ...|+++.+.|+++|+.-...- ++.|-
T Consensus        82 --------~~~i~~i~~~gk~PilvGGTglYi~all  109 (300)
T PRK14729         82 --------LKIIKELRQQKKIPIFVGGSAFYFKHLK  109 (300)
T ss_pred             --------HHHHHHHHHCCCCEEEEeCchHHHHHHH
Confidence                    7888999999999988665422 44443

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.63  E-value=4.4e-07  Score=79.70  Aligned_cols=25  Identities=24%  Similarity=0.618  Sum_probs=22.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+.|+|+||+|+|||||++.|....
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l   28 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQL   28 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHc
Confidence            3579999999999999999998864

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.63  E-value=3.8e-07  Score=78.68  Aligned_cols=145  Identities=23%  Similarity=0.309  Sum_probs=74.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecC-c-cc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHED-A-MY  170 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g-~-~Y  170 (330)
                      ++.|+|+||+|||||||++.|.+...-                       .|++.+.+.........-+.....| . +.
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~l~~-----------------------~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~   60 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKRLGY-----------------------DFIDTDHLIEARAGKSIPEIFEEEGEAAFR   60 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhCC-----------------------CEEEChHHHHHHcCCCHHHHHHHHCHHHHH
Confidence            468999999999999999999987632                       1223222221110000000000001 0 11


Q ss_pred             cccHHHHHHHHHhCCeEEEEe------CHHHHHHHHhcCCCCEEEEEccCcccc---ccC-----------chHHHHHHH
Q psy933          171 GTKLETIRRIHQEGKIAILDV------EPQALKILRTGEFSPFVVFIAAPQLQN---LSD-----------YDGSLEKLA  230 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv------~~~~v~~L~~~~~~p~vIfI~pps~~~---l~~-----------~~e~~~rl~  230 (330)
                      -.....+.+++.... +|+..      .......|+.   ..++|||.+|....   +..           ..+.+.++.
T Consensus        61 ~~~~~~~~~l~~~~~-~vi~~g~~~~~~~~~r~~l~~---~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~  136 (175)
T PRK00131         61 ELEEEVLAELLARHN-LVISTGGGAVLREENRALLRE---RGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLY  136 (175)
T ss_pred             HHHHHHHHHHHhcCC-CEEEeCCCEeecHHHHHHHHh---CCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHH
Confidence            111233445554333 34432      2333444432   35788888764221   111           011222233


Q ss_pred             HHHHHHHhhccccceEEEecC--CHHHHHHHHHHHHHHh
Q psy933          231 KESDILKSAYEHFFDLTVVNN--DIEETIGILEKAIEEL  267 (330)
Q Consensus       231 ~~~~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~~  267 (330)
                      ....   ..|...+|++|..+  +++++.+.|.+.|+.+
T Consensus       137 ~~~~---~~~~~~~dl~idt~~~~~~e~~~~I~~~v~~~  172 (175)
T PRK00131        137 EERD---PLYEEVADITVETDGRSPEEVVNEILEKLEAA  172 (175)
T ss_pred             HHHH---HHHHhhcCeEEeCCCCCHHHHHHHHHHHHHhh
Confidence            2222   23567799999755  8999999999999765

>PLN02748 tRNA dimethylallyltransferase

Probab=98.60  E-value=2.7e-08  Score=100.00  Aligned_cols=92  Identities=16%  Similarity=0.247  Sum_probs=75.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCC--------CccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPD--------KYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG  163 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~--------~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~  163 (330)
                      .++.|+|+||+|+|||+|+..|+..+..        .+..-++..|.+|...|..|+.||+++.-........+.|...+
T Consensus        21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~A  100 (468)
T PLN02748         21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDHA  100 (468)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHHH
Confidence            4568999999999999999999998752        24444789999999999999999999887776666666666544


Q ss_pred             eecCccccccHHHHHHHHHhCCeEEEEeCH
Q psy933          164 THEDAMYGTKLETIRRIHQEGKIAILDVEP  193 (330)
Q Consensus       164 ~~~g~~YGts~~~i~~v~~~gk~~vldv~~  193 (330)
                                ...|+++.+.|+++||.-..
T Consensus       101 ----------~~~I~~I~~rgk~PIlVGGT  120 (468)
T PLN02748        101 ----------VPLIEEILSRNGLPVIVGGT  120 (468)
T ss_pred             ----------HHHHHHHHhcCCCeEEEcCh
Confidence                      78889999999998886654

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.59  E-value=3.8e-07  Score=80.12  Aligned_cols=142  Identities=23%  Similarity=0.407  Sum_probs=83.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc----ceeeEEeecCc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN----QYLEYGTHEDA  168 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~----~fle~~~~~g~  168 (330)
                      .+.|+|+|+.|+|||||.+.|++...                       |.|+|.+..-+....-    -|-++|+-  .
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~-----------------------~~F~D~D~~Ie~~~g~sI~eIF~~~GE~--~   56 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALN-----------------------LPFIDTDQEIEKRTGMSIAEIFEEEGEE--G   56 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcC-----------------------CCcccchHHHHHHHCcCHHHHHHHHhHH--H
Confidence            46899999999999999999998763                       4566544322211111    12222210  0


Q ss_pred             cccccHHHHHHHHHhCCeEEEE------eCHHHHHHHHhcCCCCEEEEEccCcccccc--------------Cc-hHHHH
Q psy933          169 MYGTKLETIRRIHQEGKIAILD------VEPQALKILRTGEFSPFVVFIAAPQLQNLS--------------DY-DGSLE  227 (330)
Q Consensus       169 ~YGts~~~i~~v~~~gk~~vld------v~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------------~~-~e~~~  227 (330)
                      +--.-...+++++..+. +|+-      ++.+....|+..+   ++||+..| ++.+.              .. .+.++
T Consensus        57 FR~~E~~vl~~l~~~~~-~ViaTGGG~v~~~enr~~l~~~g---~vv~L~~~-~e~l~~Rl~~~~~RPll~~~~~~~~l~  131 (172)
T COG0703          57 FRRLETEVLKELLEEDN-AVIATGGGAVLSEENRNLLKKRG---IVVYLDAP-FETLYERLQRDRKRPLLQTEDPREELE  131 (172)
T ss_pred             HHHHHHHHHHHHhhcCC-eEEECCCccccCHHHHHHHHhCC---eEEEEeCC-HHHHHHHhccccCCCcccCCChHHHHH
Confidence            11122345556665553 4432      3455566666654   78888875 33332              01 13456


Q ss_pred             HHHHHHHHHHhhccccceEEEecCC-HHHHHHHHHHHHHHh
Q psy933          228 KLAKESDILKSAYEHFFDLTVVNND-IEETIGILEKAIEEL  267 (330)
Q Consensus       228 rl~~~~~~ie~~~~~~fD~vI~N~d-le~a~~~L~~~i~~~  267 (330)
                      .+.++..-+   |....|+++..++ .++.++++...+...
T Consensus       132 ~L~~~R~~~---Y~e~a~~~~~~~~~~~~v~~~i~~~l~~~  169 (172)
T COG0703         132 ELLEERQPL---YREVADFIIDTDDRSEEVVEEILEALEGS  169 (172)
T ss_pred             HHHHHHHHH---HHHhCcEEecCCCCcHHHHHHHHHHHHHh
Confidence            666665543   7777899998873 368888888777643

>PRK13946 shikimate kinase; Provisional

Probab=98.53  E-value=9.6e-07  Score=78.20  Aligned_cols=144  Identities=20%  Similarity=0.289  Sum_probs=78.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc---c-eeeEEeecC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN---Q-YLEYGTHED  167 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~---~-fle~~~~~g  167 (330)
                      ..+.|+|+|++||||||+++.|.+.+.-                       .|++.+........-   + |-++++  .
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~-----------------------~~id~D~~~~~~~g~~~~e~~~~~ge--~   63 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGL-----------------------PFLDADTEIERAARMTIAEIFAAYGE--P   63 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCC-----------------------CeECcCHHHHHHhCCCHHHHHHHHCH--H
Confidence            5578999999999999999999987531                       133332211111100   0 001110  0


Q ss_pred             ccccccHHHHHHHHHhCCeEEEE------eCHHHHHHHHhcCCCCEEEEEccCcc---ccccCc-----------hHHHH
Q psy933          168 AMYGTKLETIRRIHQEGKIAILD------VEPQALKILRTGEFSPFVVFIAAPQL---QNLSDY-----------DGSLE  227 (330)
Q Consensus       168 ~~YGts~~~i~~v~~~gk~~vld------v~~~~v~~L~~~~~~p~vIfI~pps~---~~l~~~-----------~e~~~  227 (330)
                      .+.-.....+.++++.+. ||+.      +.++..+.|+.   ..++|||..|.-   +.+...           .+.++
T Consensus        64 ~~~~~e~~~l~~l~~~~~-~Vi~~ggg~~~~~~~r~~l~~---~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~  139 (184)
T PRK13946         64 EFRDLERRVIARLLKGGP-LVLATGGGAFMNEETRAAIAE---KGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLA  139 (184)
T ss_pred             HHHHHHHHHHHHHHhcCC-eEEECCCCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHH
Confidence            111122445555665554 4443      34455555554   457899987632   122110           12234


Q ss_pred             HHHHHHHHHHhhccccceEEEecC--CHHHHHHHHHHHHHHhc
Q psy933          228 KLAKESDILKSAYEHFFDLTVVNN--DIEETIGILEKAIEELH  268 (330)
Q Consensus       228 rl~~~~~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~~~  268 (330)
                      ++.+....   .|. .+|++|..+  +++++++.|...|....
T Consensus       140 ~~~~~R~~---~y~-~~dl~i~~~~~~~~~~~~~i~~~i~~~~  178 (184)
T PRK13946        140 RLMEERYP---VYA-EADLTVASRDVPKEVMADEVIEALAAYL  178 (184)
T ss_pred             HHHHHHHH---HHH-hCCEEEECCCCCHHHHHHHHHHHHHHhh
Confidence            44443332   244 378888655  88999999999887654

>PLN02165 adenylate isopentenyltransferase

Probab=98.48  E-value=8.2e-08  Score=92.58  Aligned_cols=94  Identities=19%  Similarity=0.300  Sum_probs=65.9

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCc--------cccccccccCCCCcccCCeeEEEecccchhh-HHhcccee
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKY--------AYPVPHTTRSPRSDEENGRAYYFISHDEMMS-DIAANQYL  160 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f--------~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~-~i~~~~fl  160 (330)
                      +..+++|+|+||+|||||+|+..|+..++..+        ....+.+|-+|...|..|+.||.++.-.... ....+.|.
T Consensus        40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~  119 (334)
T PLN02165         40 NCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFR  119 (334)
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHH
Confidence            34567999999999999999999998865222        2335678889999999999988876433221 12222332


Q ss_pred             eEEeecCccccccHHHHHHHHHhCCeEEEEeCH
Q psy933          161 EYGTHEDAMYGTKLETIRRIHQEGKIAILDVEP  193 (330)
Q Consensus       161 e~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~  193 (330)
                                ......|+++.+.|+.+|+.-..
T Consensus       120 ----------~~a~~~I~~i~~~~~~PI~vGGT  142 (334)
T PLN02165        120 ----------SLASLSISEITSRQKLPIVAGGS  142 (334)
T ss_pred             ----------HHHHHHHHHHHHCCCcEEEECCh
Confidence                      23366778888889988876543

>PRK13947 shikimate kinase; Provisional

Probab=98.43  E-value=2.1e-06  Score=74.37  Aligned_cols=24  Identities=21%  Similarity=0.535  Sum_probs=21.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|+|++||||||++++|++.+.
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg   26 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLS   26 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC
Confidence            599999999999999999998764

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=1.6e-07  Score=89.54  Aligned_cols=91  Identities=20%  Similarity=0.254  Sum_probs=75.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCc--------cccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEe
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKY--------AYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGT  164 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f--------~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~  164 (330)
                      .+.|+|+||+|||||.|+-.|++.++...        ..-+...|-+|...|..|+.||.++.-+..+.....+|.+-. 
T Consensus         3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a-   81 (308)
T COG0324           3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDA-   81 (308)
T ss_pred             ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHH-
Confidence            46899999999999999999999977522        233678899999999999999999988877777777776554 


Q ss_pred             ecCccccccHHHHHHHHHhCCeEEEEeCH
Q psy933          165 HEDAMYGTKLETIRRIHQEGKIAILDVEP  193 (330)
Q Consensus       165 ~~g~~YGts~~~i~~v~~~gk~~vldv~~  193 (330)
                               ...|.++.++||++|+.-..
T Consensus        82 ---------~~~i~~i~~rgk~pIlVGGT  101 (308)
T COG0324          82 ---------LAAIDDILARGKLPILVGGT  101 (308)
T ss_pred             ---------HHHHHHHHhCCCCcEEEccH
Confidence                     78899999999999887654

>PRK13948 shikimate kinase; Provisional

Probab=98.40  E-value=3.9e-06  Score=74.68  Aligned_cols=140  Identities=18%  Similarity=0.230  Sum_probs=77.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccch-hhHHh---ccceeeEEeecCc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEM-MSDIA---ANQYLEYGTHEDA  168 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f-~~~i~---~~~fle~~~~~g~  168 (330)
                      ++.|+|+|++||||||+.+.|.+...                       +.|++.+.+ ++..-   ..-|-++|+  ..
T Consensus        10 ~~~I~LiG~~GsGKSTvg~~La~~lg-----------------------~~~iD~D~~ie~~~g~si~~if~~~Ge--~~   64 (182)
T PRK13948         10 VTWVALAGFMGTGKSRIGWELSRALM-----------------------LHFIDTDRYIERVTGKSIPEIFRHLGE--AY   64 (182)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHcC-----------------------CCEEECCHHHHHHHhCCHHHHHHHhCH--HH
Confidence            47899999999999999999988753                       224443322 11110   011212211  00


Q ss_pred             cccccHHHHHHHHHhCCeEEEE------eCHHHHHHHHhcCCCCEEEEEccCcccccc----C----------chHHHHH
Q psy933          169 MYGTKLETIRRIHQEGKIAILD------VEPQALKILRTGEFSPFVVFIAAPQLQNLS----D----------YDGSLEK  228 (330)
Q Consensus       169 ~YGts~~~i~~v~~~gk~~vld------v~~~~v~~L~~~~~~p~vIfI~pps~~~l~----~----------~~e~~~r  228 (330)
                      +--.-...+++++..+. +|+.      ++++....|+..   ..+|||..|. +.+.    .          ..+.+.+
T Consensus        65 fR~~E~~~l~~l~~~~~-~VIa~GgG~v~~~~n~~~l~~~---g~vV~L~~~~-e~l~~Rl~~~~RPll~~~~~~~~l~~  139 (182)
T PRK13948         65 FRRCEAEVVRRLTRLDY-AVISLGGGTFMHEENRRKLLSR---GPVVVLWASP-ETIYERTRPGDRPLLQVEDPLGRIRT  139 (182)
T ss_pred             HHHHHHHHHHHHHhcCC-eEEECCCcEEcCHHHHHHHHcC---CeEEEEECCH-HHHHHHhcCCCCCCCCCCChHHHHHH
Confidence            11122333455554433 3333      456666666653   4577777552 3221    0          1124455


Q ss_pred             HHHHHHHHHhhccccceEEEecC--CHHHHHHHHHHHHHH
Q psy933          229 LAKESDILKSAYEHFFDLTVVNN--DIEETIGILEKAIEE  266 (330)
Q Consensus       229 l~~~~~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~  266 (330)
                      +.++...   -|.. .|++|.++  +.++.+++|.+.+..
T Consensus       140 l~~~R~~---~Y~~-a~~~i~t~~~~~~ei~~~i~~~l~~  175 (182)
T PRK13948        140 LLNEREP---VYRQ-ATIHVSTDGRRSEEVVEEIVEKLWA  175 (182)
T ss_pred             HHHHHHH---HHHh-CCEEEECCCCCHHHHHHHHHHHHHH
Confidence            5554443   3643 89999866  788999988888765

>PRK04182 cytidylate kinase; Provisional

Probab=98.39  E-value=2e-06  Score=74.63  Aligned_cols=27  Identities=30%  Similarity=0.487  Sum_probs=23.0

Q ss_pred             ccceEEEecC--CHHHHHHHHHHHHHHhc
Q psy933          242 HFFDLTVVNN--DIEETIGILEKAIEELH  268 (330)
Q Consensus       242 ~~fD~vI~N~--dle~a~~~L~~~i~~~~  268 (330)
                      +.+|.+|.++  +++++++.|.+.+.+..
T Consensus       147 ~~~d~~idt~~~~~~~~~~~I~~~~~~~~  175 (180)
T PRK04182        147 SIYDLVINTSRWDPEGVFDIILTAIDKLL  175 (180)
T ss_pred             ccccEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            6799999876  89999999999887654

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=98.38  E-value=2e-06  Score=79.63  Aligned_cols=149  Identities=17%  Similarity=0.263  Sum_probs=82.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccccH
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKL  174 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts~  174 (330)
                      +|+|+|++||||||+++.|.+.+..                  .|.+++.++.+.+......  +-+  .+.........
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~------------------~~~~v~~i~~D~lr~~~~~--~~~--~~e~~~~~~~~   58 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSE------------------KNIDVIILGTDLIRESFPV--WKE--KYEEFIRDSTL   58 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHH------------------cCCceEEEccHHHHHHhHH--hhH--HhHHHHHHHHH
Confidence            4899999999999999999987532                  1334555655544332210  000  01111122334


Q ss_pred             HHHHHHHHhCCeEEEEeCH--HHH-HH----HHhcCCCCEEEEEccCccccccC---------chHHHHHHHHHHHHHHh
Q psy933          175 ETIRRIHQEGKIAILDVEP--QAL-KI----LRTGEFSPFVVFIAAPQLQNLSD---------YDGSLEKLAKESDILKS  238 (330)
Q Consensus       175 ~~i~~v~~~gk~~vldv~~--~~v-~~----L~~~~~~p~vIfI~pps~~~l~~---------~~e~~~rl~~~~~~ie~  238 (330)
                      ..++..+++|..+|+|-..  .+. ..    .+..+....+||+.+|. +.+.+         .++.+.++....+....
T Consensus        59 ~~i~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~-e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~  137 (249)
T TIGR03574        59 YLIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPL-DTLLRRNIERGEKIPNEVIKDMYEKFDEPGT  137 (249)
T ss_pred             HHHHHHHhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCH-HHHHHHHHhCCCCCCHHHHHHHHHhhCCCCC
Confidence            5677888889988888653  111 12    23344455678998773 33211         12233444433322111


Q ss_pred             hc-cccceEEEecC---CHHHHHHHHHHHHHH
Q psy933          239 AY-EHFFDLTVVNN---DIEETIGILEKAIEE  266 (330)
Q Consensus       239 ~~-~~~fD~vI~N~---dle~a~~~L~~~i~~  266 (330)
                      .| +...+++|..+   +.++++++|...+..
T Consensus       138 ~~~wd~~~~~vd~~~~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       138 KYSWDLPDLTIDTTKKIDYNEILEEILEISEN  169 (249)
T ss_pred             CCCccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence            22 24477777664   557888888876643

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.34  E-value=1.7e-06  Score=75.52  Aligned_cols=152  Identities=16%  Similarity=0.227  Sum_probs=80.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      .+..|+|+|++|+||||+++.|......                  .|.+..+++.+.+.+.+..+.-.... -....+.
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~------------------~g~~v~~id~D~~~~~~~~~~~~~~~-~r~~~~~   63 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLRE------------------AGYPVEVLDGDAVRTNLSKGLGFSKE-DRDTNIR   63 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH------------------cCCeEEEEcCccHHHHHhcCCCCChh-hHHHHHH
Confidence            3568999999999999999999876531                  12344566655554443322100000 0000111


Q ss_pred             ccHHHHHH-HHHhCCeEEEEeC---HHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHH--HHH-------Hh
Q psy933          172 TKLETIRR-IHQEGKIAILDVE---PQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKES--DIL-------KS  238 (330)
Q Consensus       172 ts~~~i~~-v~~~gk~~vldv~---~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~--~~i-------e~  238 (330)
                      .. ..+.. ....|.+++++..   ....+.++.......+|||..| .+.+.....  +-+.+..  +++       ..
T Consensus        64 ~~-~~~a~~~~~~g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~-~e~~~~R~~--~~l~~~~~~~~i~~~~~~~~~  139 (175)
T PRK00889         64 RI-GFVANLLTRHGVIVLVSAISPYRETREEVRANIGNFLEVFVDAP-LEVCEQRDV--KGLYAKARAGEIKHFTGIDDP  139 (175)
T ss_pred             HH-HHHHHHHHhCCCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCC-HHHHHHhCc--ccHHHHHHcCCCCCCcccCCC
Confidence            11 11222 3355888777643   2334555554445678999987 333221110  0012111  001       11


Q ss_pred             hcc-ccceEEEecC--CHHHHHHHHHHHHHH
Q psy933          239 AYE-HFFDLTVVNN--DIEETIGILEKAIEE  266 (330)
Q Consensus       239 ~~~-~~fD~vI~N~--dle~a~~~L~~~i~~  266 (330)
                      -|. ...|++|..+  +++++++++.+.++.
T Consensus       140 ~~~p~~ad~~i~~~~~~~~~~~~~i~~~l~~  170 (175)
T PRK00889        140 YEPPLNPEVECRTDLESLEESVDKVLQKLEE  170 (175)
T ss_pred             CCCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            132 4567777654  799999999998864

>PRK01184 hypothetical protein; Provisional

Probab=98.32  E-value=7.1e-06  Score=72.18  Aligned_cols=85  Identities=18%  Similarity=0.175  Sum_probs=47.2

Q ss_pred             CCeEEEEeC--HHHHHHHHhcCC-CCEEEEEccCcccccc---Cc--------hHHHH-HHHHHHHHHHhhccccceEEE
Q psy933          184 GKIAILDVE--PQALKILRTGEF-SPFVVFIAAPQLQNLS---DY--------DGSLE-KLAKESDILKSAYEHFFDLTV  248 (330)
Q Consensus       184 gk~~vldv~--~~~v~~L~~~~~-~p~vIfI~pps~~~l~---~~--------~e~~~-rl~~~~~~ie~~~~~~fD~vI  248 (330)
                      +..+|+|.-  +.-+..++.... ..++|+|.+|....+.   ..        .+++. ++..+...-....-...|++|
T Consensus        80 ~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~ad~vI  159 (184)
T PRK01184         80 DEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIALADYMI  159 (184)
T ss_pred             CCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHhcCEEE
Confidence            577788863  333455544322 3478899877433221   10        11221 111110000111235689999


Q ss_pred             ecC-CHHHHHHHHHHHHHHhc
Q psy933          249 VNN-DIEETIGILEKAIEELH  268 (330)
Q Consensus       249 ~N~-dle~a~~~L~~~i~~~~  268 (330)
                      .|+ +++++.+++..+++.+.
T Consensus       160 ~N~~~~~~l~~~v~~~~~~~~  180 (184)
T PRK01184        160 VNDSTLEEFRARVRKLLERIL  180 (184)
T ss_pred             eCCCCHHHHHHHHHHHHHHHh
Confidence            988 99999999999988754

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.31  E-value=2.3e-06  Score=75.17  Aligned_cols=86  Identities=21%  Similarity=0.259  Sum_probs=48.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc------ceeeEEeecC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN------QYLEYGTHED  167 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~------~fle~~~~~g  167 (330)
                      +.|+|.||.||||||++++|.+.++. -+..+ ++++.|+.++. |        +.+.......      .+.++.-+..
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~-~g~~v-~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEA-RGYEV-VLTREPGGTPI-G--------EAIRELLLDPEDEKMDPRAELLLFAA   69 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH-cCCeE-EEEeCCCCCch-H--------HHHHHHHhccCccCCCHHHHHHHHHH
Confidence            36899999999999999999988742 22223 56666654321 1        1222222211      1111111122


Q ss_pred             ccccccHHHHHHHHHhCCeEEEE
Q psy933          168 AMYGTKLETIRRIHQEGKIAILD  190 (330)
Q Consensus       168 ~~YGts~~~i~~v~~~gk~~vld  190 (330)
                      +.+....+.+...+..|.++|+|
T Consensus        70 ~r~~~~~~~~~~~~~~~~~vi~D   92 (200)
T cd01672          70 DRAQHVEEVIKPALARGKIVLSD   92 (200)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEC
Confidence            33444445555566788888888

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.30  E-value=8.4e-07  Score=74.25  Aligned_cols=97  Identities=23%  Similarity=0.395  Sum_probs=61.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceee---EEeecCcccc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLE---YGTHEDAMYG  171 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle---~~~~~g~~YG  171 (330)
                      .|+++||+||||||+++.|.+..+                       +.+++.+.+...+.....-.   +....+..+.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~-----------------------~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~   57 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG-----------------------AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQ   57 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST-----------------------EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC-----------------------CEEEeHHHHHHHHcccccccchhHHHHHHHHHH
Confidence            489999999999999999987753                       45567776665554432221   1111222344


Q ss_pred             ccHHHHHHHHHhCCeEEEEeCH---HHH----HHHHhcCCCCEEEEEccC
Q psy933          172 TKLETIRRIHQEGKIAILDVEP---QAL----KILRTGEFSPFVVFIAAP  214 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv~~---~~v----~~L~~~~~~p~vIfI~pp  214 (330)
                      .-.+.++..++.|..+|+|-..   ...    ..++..+....+|++.+|
T Consensus        58 ~~~~~~~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~  107 (143)
T PF13671_consen   58 ILNAAIRKALRNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAP  107 (143)
T ss_dssp             HHHHHHHHHHHTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHH
T ss_pred             HHHHHHHHHHHcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECC
Confidence            5556777888999999998432   222    223344556778888875

...

>PRK14530 adenylate kinase; Provisional

Probab=98.29  E-value=2.4e-05  Score=70.79  Aligned_cols=166  Identities=20%  Similarity=0.304  Sum_probs=81.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCcccc-ccccccCCC------CcccCCee--E----EEecccchhh----HHh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYP-VPHTTRSPR------SDEENGRA--Y----YFISHDEMMS----DIA  155 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~-v~~TTR~pr------~~E~~G~d--y----~fvs~~~f~~----~i~  155 (330)
                      ++.|+|+||+||||||++++|++.+.  +... +..--|.-.      .+...|..  |    ..+..+....    .+.
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~--~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~   80 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFG--VEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALS   80 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC--CeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            45799999999999999999998864  2111 000001000      00000000  0    0122222222    111


Q ss_pred             -ccceeeEEeecCccccccHHHHHH---HHHhCCeEEEEeCHHHH-HHHHhcCCC-----CEEEEEccCcccccc-----
Q psy933          156 -ANQYLEYGTHEDAMYGTKLETIRR---IHQEGKIAILDVEPQAL-KILRTGEFS-----PFVVFIAAPQLQNLS-----  220 (330)
Q Consensus       156 -~~~fle~~~~~g~~YGts~~~i~~---v~~~gk~~vldv~~~~v-~~L~~~~~~-----p~vIfI~pps~~~l~-----  220 (330)
                       .+.||--    |  |..+.+..+.   ...-+.+++|+++.+.+ +++......     .+-+++.||+.+.+.     
T Consensus        81 ~~~~~Ild----G--~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~  154 (215)
T PRK14530         81 DADGFVLD----G--YPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGG  154 (215)
T ss_pred             cCCCEEEc----C--CCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCC
Confidence             2234332    2  3333333332   22345667788887654 566654432     355667777654332     


Q ss_pred             -------CchHHH-HHHHH---HHHHHHhhccccceE-EEecC-CHHHHHHHHHHHHHH
Q psy933          221 -------DYDGSL-EKLAK---ESDILKSAYEHFFDL-TVVNN-DIEETIGILEKAIEE  266 (330)
Q Consensus       221 -------~~~e~~-~rl~~---~~~~ie~~~~~~fD~-vI~N~-dle~a~~~L~~~i~~  266 (330)
                             +.++.+ +||..   ....+...|....-+ .|..+ ++++.++.|..+|.+
T Consensus       155 rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  213 (215)
T PRK14530        155 ELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD  213 (215)
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence                   123334 34432   223344455443223 34333 899999999988864

>PRK08233 hypothetical protein; Provisional

Probab=98.28  E-value=1.2e-05  Score=69.91  Aligned_cols=25  Identities=20%  Similarity=0.432  Sum_probs=22.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..|+|.|++|||||||++.|.+.++
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            5788999999999999999998875

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.27  E-value=5e-06  Score=71.64  Aligned_cols=23  Identities=30%  Similarity=0.654  Sum_probs=20.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhhCC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      |+|+||+||||||+++.|.....
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~   23 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG   23 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC
Confidence            57999999999999999998753

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.27  E-value=4.4e-06  Score=79.09  Aligned_cols=104  Identities=12%  Similarity=0.166  Sum_probs=61.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcccee---eEEeecCc-
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYL---EYGTHEDA-  168 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fl---e~~~~~g~-  168 (330)
                      ++.|+|+||+||||||++++|.+.++                      .+.++|.+.+..++....-.   .|....+. 
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~----------------------~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~   59 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNP----------------------KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDL   59 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCC----------------------CCEEEeccHHHHHhcCCCcccccccChHHHHH
Confidence            46899999999999999999998764                      13566666666554322100   00000011 


Q ss_pred             cccccHHHHHHHHHhCCeEEEEeCH---HHHHH----HHhcCCCCEEEEEccCccccc
Q psy933          169 MYGTKLETIRRIHQEGKIAILDVEP---QALKI----LRTGEFSPFVVFIAAPQLQNL  219 (330)
Q Consensus       169 ~YGts~~~i~~v~~~gk~~vldv~~---~~v~~----L~~~~~~p~vIfI~pps~~~l  219 (330)
                      .+..-...+.+.+..|..+|+|..+   .-...    ++..+....+|++.+| .+.+
T Consensus        60 ~~~~~~~~~~~~l~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~-~e~~  116 (300)
T PHA02530         60 VTKAQEAAALAALKSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVP-VEEL  116 (300)
T ss_pred             HHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHH
Confidence            1223334456666789999998653   22222    2334455667888875 4444

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.25  E-value=6.9e-06  Score=71.82  Aligned_cols=27  Identities=19%  Similarity=0.393  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ++..|+|+|++|+||||+++.|...+.
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            456999999999999999999988764

>KOG1384|consensus

Probab=98.24  E-value=1.4e-06  Score=83.09  Aligned_cols=101  Identities=23%  Similarity=0.357  Sum_probs=80.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCC--------ccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDK--------YAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG  163 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~--------f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~  163 (330)
                      +-+.|||+||+|+|||.|+-.|+..+|..        +......+|.++...|..|+.+|.+..-..+.....++|-.  
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~--   83 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED--   83 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH--
Confidence            34799999999999999999999988753        33347789999999999999999988877776666666644  


Q ss_pred             eecCccccccHHHHHHHHHhCCeEEEEeCH-HHHHHHHhc
Q psy933          164 THEDAMYGTKLETIRRIHQEGKIAILDVEP-QALKILRTG  202 (330)
Q Consensus       164 ~~~g~~YGts~~~i~~v~~~gk~~vldv~~-~~v~~L~~~  202 (330)
                              ....+|+++...||++|+.-.. ..++.|-..
T Consensus        84 --------~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~  115 (348)
T KOG1384|consen   84 --------DASRAIEEIHSRGKLPIVVGGSNSYLQALLSK  115 (348)
T ss_pred             --------HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhc
Confidence                    4478999999999999987664 445555544

>PRK13949 shikimate kinase; Provisional

Probab=98.18  E-value=1.6e-05  Score=69.68  Aligned_cols=24  Identities=21%  Similarity=0.508  Sum_probs=21.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +.|+|+||+|+|||||++.|.+.+
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l   25 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALAREL   25 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            469999999999999999999875

>TIGR00235 udk uridine kinase

Probab=98.18  E-value=8.2e-06  Score=73.46  Aligned_cols=28  Identities=14%  Similarity=0.274  Sum_probs=24.6

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..|+|+||||||||||++.|...++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3457899999999999999999998765

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.16  E-value=1.2e-05  Score=69.88  Aligned_cols=24  Identities=29%  Similarity=0.589  Sum_probs=21.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..|+|+|++|+||||+++.|.+.+
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~l   26 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQAL   26 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999999875

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.14  E-value=1.7e-05  Score=68.34  Aligned_cols=23  Identities=22%  Similarity=0.512  Sum_probs=21.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|.|++||||||+++.|.+.+
T Consensus         2 iI~i~G~~GSGKstia~~la~~l   24 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKL   24 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            68999999999999999998864

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.12  E-value=2e-05  Score=68.50  Aligned_cols=148  Identities=18%  Similarity=0.315  Sum_probs=78.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecc-cchhhHHhcc-----ceeeEEeecCc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISH-DEMMSDIAAN-----QYLEYGTHEDA  168 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~-~~f~~~i~~~-----~fle~~~~~g~  168 (330)
                      .|.|.||+||||||++++|++.+.-                       -+||- .-|.++.+.-     +|-++++-+-.
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl-----------------------~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~   58 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGL-----------------------KLVSAGTIFREMARERGMSLEEFSRYAEEDPE   58 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCC-----------------------ceeeccHHHHHHHHHcCCCHHHHHHHHhcCch
Confidence            5889999999999999999987642                       22221 1233322211     12222221111


Q ss_pred             cccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc-----C---chHHHHHHHHH--HH--HH
Q psy933          169 MYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS-----D---YDGSLEKLAKE--SD--IL  236 (330)
Q Consensus       169 ~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~-----~---~~e~~~rl~~~--~~--~i  236 (330)
                      . -.-.+.-+..+++...|||+-...|--. +  ....+-||+++|-....+     +   .++.+..+.+.  ++  .-
T Consensus        59 i-D~~iD~rq~e~a~~~nvVlegrLA~Wi~-k--~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY  134 (179)
T COG1102          59 I-DKEIDRRQKELAKEGNVVLEGRLAGWIV-R--EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRY  134 (179)
T ss_pred             h-hHHHHHHHHHHHHcCCeEEhhhhHHHHh-c--cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            0 0012222223344666777776655322 2  455677999988433222     1   12222222211  11  11


Q ss_pred             Hhhcc------ccceEEEecC--CHHHHHHHHHHHHHHhcC
Q psy933          237 KSAYE------HFFDLTVVNN--DIEETIGILEKAIEELHT  269 (330)
Q Consensus       237 e~~~~------~~fD~vI~N~--dle~a~~~L~~~i~~~~~  269 (330)
                      ..-|+      ..||.||...  +.++.+.-|..++..+..
T Consensus       135 ~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~  175 (179)
T COG1102         135 KKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSI  175 (179)
T ss_pred             HHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhcc
Confidence            12233      4689998766  888888888888877643

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.11  E-value=5e-05  Score=67.91  Aligned_cols=161  Identities=14%  Similarity=0.200  Sum_probs=82.1

Q ss_pred             ceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceee
Q psy933           82 YEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLE  161 (330)
Q Consensus        82 Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle  161 (330)
                      .+...++++ .+..|+|+|++|+|||||++.|.......                  |....+++.+.+...+..+  +.
T Consensus        14 ~~~~~~~~~-~~~~i~i~G~~GsGKSTla~~l~~~l~~~------------------~~~~~~ld~d~~~~~~~~~--~~   72 (198)
T PRK03846         14 AQREQLHGH-KGVVLWFTGLSGSGKSTVAGALEEALHEL------------------GVSTYLLDGDNVRHGLCSD--LG   72 (198)
T ss_pred             HHHHHhcCC-CCEEEEEECCCCCCHHHHHHHHHHHHHhC------------------CCCEEEEcCEeHHhhhhhc--CC
Confidence            333444433 45799999999999999999998764321                  1112233333333222111  11


Q ss_pred             EE-eecCccccccHHHHHHHHHhCCeEEEEeC---HHHHHHHHhcC-CCC-EEEEEccCccccccCchHHHHHHHHHH--
Q psy933          162 YG-THEDAMYGTKLETIRRIHQEGKIAILDVE---PQALKILRTGE-FSP-FVVFIAAPQLQNLSDYDGSLEKLAKES--  233 (330)
Q Consensus       162 ~~-~~~g~~YGts~~~i~~v~~~gk~~vldv~---~~~v~~L~~~~-~~p-~vIfI~pps~~~l~~~~e~~~rl~~~~--  233 (330)
                      |. +-....|-.-.+.....+..|.++|.+..   .+-...++..- -.+ ++||+..|. +.+.+.+.  +.+....  
T Consensus        73 ~~~~~~~~~~~~l~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~-e~~~~R~~--r~l~~~~~~  149 (198)
T PRK03846         73 FSDADRKENIRRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPL-AICEARDP--KGLYKKARA  149 (198)
T ss_pred             cCcccHHHHHHHHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCH-HHHHhcCc--hhHHHHhhc
Confidence            10 00011121111223445567888887664   22233344321 124 479999874 33222111  1122211  


Q ss_pred             H------HHHhhcc--ccceEEEecC--CHHHHHHHHHHHHHH
Q psy933          234 D------ILKSAYE--HFFDLTVVNN--DIEETIGILEKAIEE  266 (330)
Q Consensus       234 ~------~ie~~~~--~~fD~vI~N~--dle~a~~~L~~~i~~  266 (330)
                      .      .....|.  ...|++|.++  ++++++++|.+.+..
T Consensus       150 ~~~~~l~~~r~~Y~~p~~ad~~Idt~~~~~~~vv~~Il~~l~~  192 (198)
T PRK03846        150 GEIRNFTGIDSVYEAPESPEIHLDTGEQLVTNLVEQLLDYLRQ  192 (198)
T ss_pred             CCccCcccccccCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Confidence            0      1112365  5678888754  789999998888764

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.11  E-value=1.4e-05  Score=69.98  Aligned_cols=25  Identities=20%  Similarity=0.519  Sum_probs=22.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+.|+|+||+||||||++++|.+.+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999999875

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.11  E-value=3.4e-05  Score=69.34  Aligned_cols=27  Identities=19%  Similarity=0.405  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..|.|+||||||||||++.|.+.++
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~   31 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEELG   31 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346899999999999999999998873

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.10  E-value=2.8e-06  Score=76.03  Aligned_cols=165  Identities=18%  Similarity=0.158  Sum_probs=78.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCcccc----ccccccCCCC------cccCCeeEE----EecccchhhHHhccce
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYP----VPHTTRSPRS------DEENGRAYY----FISHDEMMSDIAANQY  159 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~----v~~TTR~pr~------~E~~G~dy~----fvs~~~f~~~i~~~~f  159 (330)
                      +.|+|+|++||||||+++.|.+ +.  +...    +.|.--.|..      -+.-|.++.    .+++..+.+.+-.+..
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~   79 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LG--APVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPE   79 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cC--CEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHH
Confidence            5799999999999999998876 32  2111    1110000000      000111111    2444444443333321


Q ss_pred             eeEEeecCccccccHHHHHHHHHhC---CeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc---C----chHHH-HH
Q psy933          160 LEYGTHEDAMYGTKLETIRRIHQEG---KIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS---D----YDGSL-EK  228 (330)
Q Consensus       160 le~~~~~g~~YGts~~~i~~v~~~g---k~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~---~----~~e~~-~r  228 (330)
                      .-..--+--++... ..+.+.+++.   +.+|+++..---..+.  ...-.+|+|.+|.-..++   .    +++++ +|
T Consensus        80 ~~~~L~~i~hP~v~-~~~~~~~~~~~~~~~vv~e~pll~e~~~~--~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~r  156 (194)
T PRK00081         80 ARKKLEAILHPLIR-EEILEQLQEAESSPYVVLDIPLLFENGLE--KLVDRVLVVDAPPETQLERLMARDGLSEEEAEAI  156 (194)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHcccCCEEEEEehHhhcCCch--hhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence            10000000122232 2333434333   5677776542111111  123477888877432221   1    22233 23


Q ss_pred             HHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHH
Q psy933          229 LAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEE  266 (330)
Q Consensus       229 l~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~  266 (330)
                      +..+..  ........|++|.|+ +++++.+++..++++
T Consensus       157 i~~Q~~--~~~~~~~ad~vI~N~g~~e~l~~qv~~i~~~  193 (194)
T PRK00081        157 IASQMP--REEKLARADDVIDNNGDLEELRKQVERLLQE  193 (194)
T ss_pred             HHHhCC--HHHHHHhCCEEEECCCCHHHHHHHHHHHHHh
Confidence            332211  122345689999998 999999999988865

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.08  E-value=2.3e-05  Score=69.04  Aligned_cols=150  Identities=19%  Similarity=0.251  Sum_probs=77.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      ++..|+|+|++|+||||+++.|...++.                  .|....+++.+.+...+..+......... ..|-
T Consensus        17 ~~~~i~i~G~~GsGKstla~~l~~~l~~------------------~~~~~~~l~~d~~r~~l~~~~~~~~~~~~-~~~~   77 (184)
T TIGR00455        17 RGVVIWLTGLSGSGKSTIANALEKKLES------------------KGYRVYVLDGDNVRHGLNKDLGFSEEDRK-ENIR   77 (184)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH------------------cCCcEEEECChHHHhhhccccCCCHHHHH-HHHH
Confidence            4569999999999999999999877532                  11122344444444332221100000000 0111


Q ss_pred             ccHHHHHHHHHhCCeEEEEeCH---HHHHHHHhc--CCCCEEEEEccCccccccCchHHHHHHHHHH--------HHHHh
Q psy933          172 TKLETIRRIHQEGKIAILDVEP---QALKILRTG--EFSPFVVFIAAPQLQNLSDYDGSLEKLAKES--------DILKS  238 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv~~---~~v~~L~~~--~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~--------~~ie~  238 (330)
                      .-.......+.+|.++|++...   .....++..  ....++||+..|- +.+.+.+.  +.+....        .....
T Consensus        78 ~~~~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~-e~~~~R~~--~~l~~~~~~~~~~~l~~~~~  154 (184)
T TIGR00455        78 RIGEVAKLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPL-EVCEQRDP--KGLYKKARNGEIKGFTGIDS  154 (184)
T ss_pred             HHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCH-HHHHHhCc--hhHHHHHhcCCccCcccccC
Confidence            1112334466789999988752   222333332  1234578888763 33321111  1122211        11223


Q ss_pred             hcc--ccceEEEecC--CHHHHHHHHHHH
Q psy933          239 AYE--HFFDLTVVNN--DIEETIGILEKA  263 (330)
Q Consensus       239 ~~~--~~fD~vI~N~--dle~a~~~L~~~  263 (330)
                      .|.  ...|++|.++  +++++++++.+.
T Consensus       155 ~y~~p~~adl~Idt~~~~~~~~~~~i~~~  183 (184)
T TIGR00455       155 PYEAPENPEVVLDTDQNDREECVGQIIEK  183 (184)
T ss_pred             CCCCCCCCcEEEECCCCCHHHHHHHHHHh
Confidence            343  5788999865  788888887654

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.08  E-value=1.3e-05  Score=67.81  Aligned_cols=24  Identities=25%  Similarity=0.537  Sum_probs=21.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|+||+|+|||||++.|.+.+.
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~   24 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALG   24 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhC
Confidence            488999999999999999987753

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.06  E-value=4.9e-05  Score=72.94  Aligned_cols=147  Identities=14%  Similarity=0.298  Sum_probs=78.3

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccc-hhhHH--hcccee-eEEeec
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDE-MMSDI--AANQYL-EYGTHE  166 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~-f~~~i--~~~~fl-e~~~~~  166 (330)
                      .+++.|+|+|++||||||+++.|.+.+.-.                       |++.+. +++..  .-.++. ++|  .
T Consensus       131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~-----------------------~id~D~~i~~~~G~~i~ei~~~~G--~  185 (309)
T PRK08154        131 ARRRRIALIGLRGAGKSTLGRMLAARLGVP-----------------------FVELNREIEREAGLSVSEIFALYG--Q  185 (309)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHcCCC-----------------------EEeHHHHHHHHhCCCHHHHHHHHC--H
Confidence            355799999999999999999998875321                       121111 11000  000000 011  0


Q ss_pred             CccccccHHHHHHHHHhCCeEEEEeCH------HHHHHHHhcCCCCEEEEEccCcc---ccccC--------c----hHH
Q psy933          167 DAMYGTKLETIRRIHQEGKIAILDVEP------QALKILRTGEFSPFVVFIAAPQL---QNLSD--------Y----DGS  225 (330)
Q Consensus       167 g~~YGts~~~i~~v~~~gk~~vldv~~------~~v~~L~~~~~~p~vIfI~pps~---~~l~~--------~----~e~  225 (330)
                      ..+.-.-...+.+++.....+|+....      ...+.+..   ..++|||..|.-   +.+..        .    .+.
T Consensus       186 ~~fr~~e~~~l~~ll~~~~~~VI~~Ggg~v~~~~~~~~l~~---~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~  262 (309)
T PRK08154        186 EGYRRLERRALERLIAEHEEMVLATGGGIVSEPATFDLLLS---HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMED  262 (309)
T ss_pred             HHHHHHHHHHHHHHHhhCCCEEEECCCchhCCHHHHHHHHh---CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHH
Confidence            112223334455555544445554422      22333333   457899987632   12211        0    133


Q ss_pred             HHHHHHHHHHHHhhccccceEEEecC--CHHHHHHHHHHHHHHhcC
Q psy933          226 LEKLAKESDILKSAYEHFFDLTVVNN--DIEETIGILEKAIEELHT  269 (330)
Q Consensus       226 ~~rl~~~~~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~~~~  269 (330)
                      ++++.+.....   | ..+|++|.++  ++++++++|...+...-.
T Consensus       263 i~~~~~~R~~~---y-~~ad~~I~t~~~s~ee~~~~I~~~l~~~~~  304 (309)
T PRK08154        263 LRRILASREPL---Y-ARADAVVDTSGLTVAQSLARLRELVRPALG  304 (309)
T ss_pred             HHHHHHHHHHH---H-HhCCEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence            44444433322   3 4589999887  789999999998876643

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.00  E-value=3.4e-05  Score=79.54  Aligned_cols=147  Identities=17%  Similarity=0.285  Sum_probs=81.5

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccc-hhhHHh--ccc-eeeEEee
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDE-MMSDIA--ANQ-YLEYGTH  165 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~-f~~~i~--~~~-fle~~~~  165 (330)
                      |.+...|+|+|++||||||+.+.|.+...                       +-|+|.+. +++..-  -.+ |-++|+ 
T Consensus         3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~-----------------------~~fiD~D~~ie~~~g~si~eif~~~Ge-   58 (542)
T PRK14021          3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMR-----------------------LPFADADVEIEREIGMSIPSYFEEYGE-   58 (542)
T ss_pred             CCCCccEEEECCCCCCHHHHHHHHHHHhC-----------------------CCEEEchHHHHHHHCcCHHHHHHHHHH-
Confidence            44567899999999999999999998753                       23444433 222110  011 222221 


Q ss_pred             cCccccccHHHHHHHHHhCCeEEEEe------CHHHHHHHHhc-CCCCEEEEEccCcccccc-------------C-chH
Q psy933          166 EDAMYGTKLETIRRIHQEGKIAILDV------EPQALKILRTG-EFSPFVVFIAAPQLQNLS-------------D-YDG  224 (330)
Q Consensus       166 ~g~~YGts~~~i~~v~~~gk~~vldv------~~~~v~~L~~~-~~~p~vIfI~pps~~~l~-------------~-~~e  224 (330)
                       ..+.-.-.+.+++++.. ..+|+.+      +++..+.|+.. .-.-++|||..|- +.+.             . ..+
T Consensus        59 -~~FR~~E~~~l~~~~~~-~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~-~~l~~Rl~~~~~RPll~~~~~~  135 (542)
T PRK14021         59 -PAFREVEADVVADMLED-FDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADP-KEAMERANRGGGRPMLNGDANK  135 (542)
T ss_pred             -HHHHHHHHHHHHHHHhc-CCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCH-HHHHHHHhCCCCCCCCCCCcHH
Confidence             01112223344444433 2344433      44555554321 1123778887652 2221             1 123


Q ss_pred             HHHHHHHHHHHHHhhccccceEEEecC--CHHHHHHHHHHHHHH
Q psy933          225 SLEKLAKESDILKSAYEHFFDLTVVNN--DIEETIGILEKAIEE  266 (330)
Q Consensus       225 ~~~rl~~~~~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~  266 (330)
                      .++++++++..   .|....|++|.++  +.++++++|.+.+..
T Consensus       136 ~~~~l~~~R~~---~Y~~~Ad~~i~~~~~~~~~~~~~i~~~~~~  176 (542)
T PRK14021        136 RWKKLFKQRDP---VFRQVANVHVHTRGLTPQAAAKKLIDMVAE  176 (542)
T ss_pred             HHHHHHHHHHH---HHHhhCCEEEECCCCCHHHHHHHHHHHHHh
Confidence            45566655443   4778899999865  799999999988865

>PRK14532 adenylate kinase; Provisional

Probab=98.00  E-value=9.1e-05  Score=65.31  Aligned_cols=24  Identities=21%  Similarity=0.427  Sum_probs=21.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|+||+||||||++++|++.+.
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g   25 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERG   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            488999999999999999998763

>PRK03839 putative kinase; Provisional

Probab=97.98  E-value=0.00016  Score=63.44  Aligned_cols=23  Identities=26%  Similarity=0.590  Sum_probs=21.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+|++||||||++++|.+.+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~   24 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999875

>PRK06696 uridine kinase; Validated

Probab=97.98  E-value=1.1e-05  Score=73.60  Aligned_cols=27  Identities=11%  Similarity=0.278  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..|+|.|+||||||||++.|.+.++
T Consensus        21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~   47 (223)
T PRK06696         21 RPLRVAIDGITASGKTTFADELAEEIK   47 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            446899999999999999999998875

>PLN02200 adenylate kinase family protein

Probab=97.97  E-value=0.00014  Score=67.22  Aligned_cols=41  Identities=20%  Similarity=0.292  Sum_probs=30.2

Q ss_pred             cccCceeeecccCC-CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           78 DLVTYEEVVKLPSF-KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        78 ~~~~Ye~V~~~~~~-~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ++++.|++-.-+.- .+..|+|+||+||||||++++|++.+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g   68 (234)
T PLN02200         27 EIITLEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETFG   68 (234)
T ss_pred             cccccccccCCccCCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45666665544432 235789999999999999999998763

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=97.97  E-value=0.00011  Score=66.20  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=22.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++.|+|.|+|||||||++.+|....
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~~   27 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARHR   27 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3589999999999999999999875

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.94  E-value=3.6e-05  Score=68.56  Aligned_cols=24  Identities=17%  Similarity=0.486  Sum_probs=21.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|.|+||+|||||||++.|...++
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~   24 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG   24 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999988763

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.94  E-value=7.8e-06  Score=71.31  Aligned_cols=93  Identities=25%  Similarity=0.283  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccc-------cccccCCCCcccCCeeEEEecccchhh--------HHhc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPV-------PHTTRSPRSDEENGRAYYFISHDEMMS--------DIAA  156 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v-------~~TTR~pr~~E~~G~dy~fvs~~~f~~--------~i~~  156 (330)
                      .+++++|+|+||||||||+|.|....-.. ...|       .||||..+.-+.++ .-+.+|..-|..        .--.
T Consensus        34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~-t~~is~~~~rGkHTTt~~~l~~l~~-g~~iIDTPGf~~~~l~~~~~~~l~  111 (161)
T PF03193_consen   34 KGKTSVLLGQSGVGKSSLINALLPEAKQK-TGEISEKTGRGKHTTTHRELFPLPD-GGYIIDTPGFRSFGLWHIDPEELA  111 (161)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHTSS-----S--------------SEEEEEETT-SEEEECSHHHHT--GCCS-HHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhhcchh-hhhhhcccCCCcccCCCeeEEecCC-CcEEEECCCCCccccccCCHHHHH
Confidence            34899999999999999999998763211 1222       38888766655522 234444433332        2223


Q ss_pred             cceeeEEeecCc-------cccccHHHHHHHHHhCCe
Q psy933          157 NQYLEYGTHEDA-------MYGTKLETIRRIHQEGKI  186 (330)
Q Consensus       157 ~~fle~~~~~g~-------~YGts~~~i~~v~~~gk~  186 (330)
                      ..|.|...+.+.       +-.-+-.+|++++++|.+
T Consensus       112 ~~F~e~~~~~~~CkF~~C~H~~Ep~CaV~~av~~g~i  148 (161)
T PF03193_consen  112 QYFPEFRPLAGQCKFRDCTHIHEPGCAVKAAVENGEI  148 (161)
T ss_dssp             HCSGGGHHHTTHSSSTTTTSSSSTT-HHHHHHHTTSS
T ss_pred             HHHHHhccccCCCCccCCCCCCCCCChHHHHHHCCCC
Confidence            346665554432       345778899999999975

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK14531 adenylate kinase; Provisional

Probab=97.90  E-value=0.00013  Score=64.46  Aligned_cols=26  Identities=23%  Similarity=0.439  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      |++.|+|+||+||||||++++|.+.+
T Consensus         1 ~~~~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          1 MKQRLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999999876

>cd01895 EngA2 EngA2 subfamily

Probab=97.90  E-value=0.00035  Score=59.04  Aligned_cols=57  Identities=21%  Similarity=0.350  Sum_probs=40.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccchh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEMM  151 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f~  151 (330)
                      ..|+|+|++|+|||||+++|..... ......+.||+.....  +.+|.+|.+++...+.
T Consensus         3 ~~i~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~   61 (174)
T cd01895           3 IRIAIIGRPNVGKSSLVNALLGEER-VIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIR   61 (174)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCccc-eeccCCCCCccCceeeEEEECCeeEEEEECCCCc
Confidence            4689999999999999999987532 2334566777766443  3467777777766554

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00625 shikimate kinase; Provisional

Probab=97.89  E-value=9.2e-05  Score=65.30  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+|++||||||+++.|.+..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l   24 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFL   24 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998875

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.89  E-value=0.00024  Score=67.62  Aligned_cols=22  Identities=18%  Similarity=0.356  Sum_probs=20.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHH
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLI  114 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~  114 (330)
                      .+.|+|+|++||||||+++.|.
T Consensus         6 ~~~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          6 MRLVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             ceEEEEECCCCCcHHHHHHHHH
Confidence            4689999999999999999885

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=97.88  E-value=6.8e-05  Score=66.29  Aligned_cols=26  Identities=23%  Similarity=0.333  Sum_probs=23.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ++.|+|.|+.||||||++++|.+.+.
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~   28 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQ   28 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999998765

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=97.85  E-value=6.7e-05  Score=66.32  Aligned_cols=150  Identities=18%  Similarity=0.259  Sum_probs=80.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHh-----ccceeeEE----
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA-----ANQYLEYG----  163 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~-----~~~fle~~----  163 (330)
                      +++|+|-|||.||||||++.|.+.++.                     .|..++.+.|..++.     .+.-++++    
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~---------------------p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~   59 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPE---------------------PWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRP   59 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS----------------------EEEEEHHHHHHHS-GGGGTSTTSEEEETTSE
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcC---------------------CeEEEecChHHhhcCcccccCCccccccccCC
Confidence            368999999999999999999998874                     245556666666433     22334433    


Q ss_pred             ---eecCccccccHHHHHHHHHhCCeEEEEe---CHHH-HHHHHh--cCCCCEEEEEccCccccccCchHHH-HHH-HHH
Q psy933          164 ---THEDAMYGTKLETIRRIHQEGKIAILDV---EPQA-LKILRT--GEFSPFVVFIAAPQLQNLSDYDGSL-EKL-AKE  232 (330)
Q Consensus       164 ---~~~g~~YGts~~~i~~v~~~gk~~vldv---~~~~-v~~L~~--~~~~p~vIfI~pps~~~l~~~~e~~-~rl-~~~  232 (330)
                         ......|..-..+|....+.|..+|+|-   ++.. ...++.  .+....+|=|.+| .+++...+..- .|. -.+
T Consensus        60 ~~~~~~~~~~~~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cp-leil~~RE~~RgDR~~G~a  138 (174)
T PF07931_consen   60 DGGPLFRRLYAAMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCP-LEILERRERARGDRPIGLA  138 (174)
T ss_dssp             EE-HHHHHHHHHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE---HHHHHHHHHHHTSSSTTHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECC-HHHHHHHHHhcCCcchHHH
Confidence               1222346666778888889999999882   3332 344533  2455566777776 44443111000 010 001


Q ss_pred             HHHHHhh-ccccceEEEecC--CHHHHHHHHHHHH
Q psy933          233 SDILKSA-YEHFFDLTVVNN--DIEETIGILEKAI  264 (330)
Q Consensus       233 ~~~ie~~-~~~~fD~vI~N~--dle~a~~~L~~~i  264 (330)
                      ....+.- -...||+.|...  +.+++.++|.+.+
T Consensus       139 ~~q~~~Vh~~~~YDleVDTs~~sp~ecA~~I~~~~  173 (174)
T PF07931_consen  139 AWQAEHVHEGGRYDLEVDTSATSPEECAREILARL  173 (174)
T ss_dssp             HHHTTGGGTT---SEEEETTSS-HHHHHHHHHTT-
T ss_pred             HHHHhhcccCCCCCEEEECCCCCHHHHHHHHHHHh
Confidence            1111111 235699999876  7888888887654

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=97.85  E-value=7.5e-05  Score=77.40  Aligned_cols=150  Identities=20%  Similarity=0.265  Sum_probs=82.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEee-cCccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTH-EDAMY  170 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~-~g~~Y  170 (330)
                      .+..|+|+|++|+|||||++.|.+..-.                 ..|.+..|++.+.+...+..+.  .|... ....|
T Consensus       391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~-----------------~~g~~~~~lD~D~vr~~l~ge~--~f~~~er~~~~  451 (568)
T PRK05537        391 QGFTVFFTGLSGAGKSTIAKALMVKLME-----------------MRGRPVTLLDGDVVRKHLSSEL--GFSKEDRDLNI  451 (568)
T ss_pred             CCeEEEEECCCCChHHHHHHHHHHHhhh-----------------ccCceEEEeCCcHHHHhccCCC--CCCHHHHHHHH
Confidence            3458999999999999999999886531                 1233445666665544332211  11100 00112


Q ss_pred             cccHHHHHHHHHhCCeEEEEeC-H------HHHHHHHhcCCCCEEEEEccCccccccCch----------HHHHHHHHHH
Q psy933          171 GTKLETIRRIHQEGKIAILDVE-P------QALKILRTGEFSPFVVFIAAPQLQNLSDYD----------GSLEKLAKES  233 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~-~------~~v~~L~~~~~~p~vIfI~pps~~~l~~~~----------e~~~rl~~~~  233 (330)
                      ..-......+++.|..+|++.. +      .....++..+ ..++||+..| .+.+.+..          +.++.+....
T Consensus       452 ~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p-~e~l~~R~rr~Ll~~~~~~~i~~l~~~R  529 (568)
T PRK05537        452 LRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATP-LEVCEQRDRKGLYAKAREGKIKGFTGIS  529 (568)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCC-HHHHHHhccccccccchhchhhcccccc
Confidence            2111123457788999988842 1      2233343332 2368999976 33332110          1112221111


Q ss_pred             HHHHhhcc--ccceEEEecC--CHHHHHHHHHHHHHH
Q psy933          234 DILKSAYE--HFFDLTVVNN--DIEETIGILEKAIEE  266 (330)
Q Consensus       234 ~~ie~~~~--~~fD~vI~N~--dle~a~~~L~~~i~~  266 (330)
                          ..|.  ...|++|.++  ++++++++|...+..
T Consensus       530 ----~~yy~p~~Adl~IDt~~~s~~eiv~~Il~~L~~  562 (568)
T PRK05537        530 ----DPYEPPANPELVIDTTNVTPDECAHKILLYLEE  562 (568)
T ss_pred             ----ccccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence                1222  4578888876  789999999888764

>PLN02924 thymidylate kinase

Probab=97.84  E-value=0.00019  Score=65.69  Aligned_cols=162  Identities=14%  Similarity=0.116  Sum_probs=83.2

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccc----eeeEEeec
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQ----YLEYGTHE  166 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~----fle~~~~~  166 (330)
                      .+++.|+|-|+.||||||+++.|.+.+... +..+ .+||.|..+...|.        ...+.+..+.    ..+.--|.
T Consensus        14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v-~~~~ep~~~~~~g~--------~ir~~l~~~~~~~~~~~~llf~   83 (220)
T PLN02924         14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAA-ELWRFPDRTTSVGQ--------MISAYLSNKSQLDDRAIHLLFS   83 (220)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCc-eeeeCCCCCChHHH--------HHHHHHhCCCCCCHHHHHHHHH
Confidence            356799999999999999999999887642 2333 45666653221111        1111111110    00000001


Q ss_pred             CccccccHHHHHHHHHhCCeEEEEeCHHH--------------HHHHHhcCCCC-EEEEEccCcccccc---C------c
Q psy933          167 DAMYGTKLETIRRIHQEGKIAILDVEPQA--------------LKILRTGEFSP-FVVFIAAPQLQNLS---D------Y  222 (330)
Q Consensus       167 g~~YGts~~~i~~v~~~gk~~vldv~~~~--------------v~~L~~~~~~p-~vIfI~pps~~~l~---~------~  222 (330)
                      .+.+- ....|...+++|+++|+|=-..+              +..+....+.| ++||+..|.-..++   .      .
T Consensus        84 adR~~-~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~~~E~  162 (220)
T PLN02924         84 ANRWE-KRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYEK  162 (220)
T ss_pred             HHHHH-HHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCcccccc
Confidence            11111 13457777888999888754431              22233333456 67888865322111   0      0


Q ss_pred             hHHHHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933          223 DGSLEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       223 ~e~~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                      .+-++++.+....+..   .. -.+|.++ ++++..++|.++|...
T Consensus       163 ~~~~~rv~~~Y~~la~---~~-~~vIDa~~sieeV~~~I~~~I~~~  204 (220)
T PLN02924        163 LEFQKKVAKRFQTLRD---SS-WKIIDASQSIEEVEKKIREVVLDT  204 (220)
T ss_pred             HHHHHHHHHHHHHHhh---cC-EEEECCCCCHHHHHHHHHHHHHHH
Confidence            1112333333333321   11 1344444 8999999998888653

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=97.80  E-value=2.3e-05  Score=80.97  Aligned_cols=79  Identities=23%  Similarity=0.323  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhhHHh---ccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMSDIA---ANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~~i~---~~~fle~~~~~  166 (330)
                      ++..++|+||||+|||||++.|.+.++             |..|++  ||.|..-++.+...+.+.   ++.++..++..
T Consensus       354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~-------------~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~  420 (567)
T COG1132         354 PGEKVAIVGPSGSGKSTLIKLLLRLYD-------------PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIR  420 (567)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC-------------CCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHH
Confidence            457899999999999999999887765             334443  899988888888777655   88889889988


Q ss_pred             Cc-ccccc---HHHHHHHHHh
Q psy933          167 DA-MYGTK---LETIRRIHQE  183 (330)
Q Consensus       167 g~-~YGts---~~~i~~v~~~  183 (330)
                      .| .||.+   .+.|.++++.
T Consensus       421 ~NI~~g~~~at~eei~~a~k~  441 (567)
T COG1132         421 ENIALGRPDATDEEIEEALKL  441 (567)
T ss_pred             HHHhcCCCCCCHHHHHHHHHH
Confidence            88 68854   4556655543

>PRK13975 thymidylate kinase; Provisional

Probab=97.79  E-value=0.00027  Score=62.48  Aligned_cols=27  Identities=26%  Similarity=0.390  Sum_probs=24.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      |++.|+|.|+.||||||+++.|.+.+.
T Consensus         1 m~~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          1 MNKFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            357899999999999999999998875

>PLN02199 shikimate kinase

Probab=97.78  E-value=0.00024  Score=67.75  Aligned_cols=26  Identities=15%  Similarity=0.438  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +++.|+|+|++|+||||+.+.|.+..
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~L  126 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVL  126 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            46899999999999999999998764

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=97.77  E-value=0.00051  Score=68.11  Aligned_cols=53  Identities=19%  Similarity=0.218  Sum_probs=40.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccC---CeeEEEecccc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEEN---GRAYYFISHDE  149 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~---G~dy~fvs~~~  149 (330)
                      -|+|+|.++||||||++.|....|  .....|.|||.|-.|-+.   +..+.|++..-
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPG  216 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPG  216 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCC
Confidence            489999999999999999997765  356678999999877442   23355555443

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=97.77  E-value=1.2e-05  Score=72.79  Aligned_cols=27  Identities=22%  Similarity=0.215  Sum_probs=23.4

Q ss_pred             ccceEEEecC-CHHHHHHHHHHHHHHhc
Q psy933          242 HFFDLTVVNN-DIEETIGILEKAIEELH  268 (330)
Q Consensus       242 ~~fD~vI~N~-dle~a~~~L~~~i~~~~  268 (330)
                      ..+|++|.|+ ++++..+++..+++.+.
T Consensus       177 ~~ad~vI~N~g~~e~l~~~i~~~~~~~~  204 (208)
T PRK14731        177 ERADYVIYNNGTLDELKAQTEQLYQVLL  204 (208)
T ss_pred             HhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            4689999998 99999999999987763

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=97.76  E-value=0.00014  Score=61.65  Aligned_cols=23  Identities=22%  Similarity=0.628  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +|+|+||+||||||+++.|.+..
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~   23 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL   23 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc
Confidence            47899999999999999998763

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.75  E-value=0.00044  Score=64.06  Aligned_cols=151  Identities=21%  Similarity=0.239  Sum_probs=78.9

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCc-
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDA-  168 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~-  168 (330)
                      ...+-.|.|+||||||||||.+.++-... -..+.|....++. .+-..++-|.|          ++...+-|-+..+| 
T Consensus        26 v~~GEfvsilGpSGcGKSTLLriiAGL~~-p~~G~V~~~g~~v-~~p~~~~~~vF----------Q~~~LlPW~Tv~~NV   93 (248)
T COG1116          26 VEKGEFVAILGPSGCGKSTLLRLIAGLEK-PTSGEVLLDGRPV-TGPGPDIGYVF----------QEDALLPWLTVLDNV   93 (248)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCccc-CCCCCCEEEEe----------ccCcccchhhHHhhh
Confidence            34678999999999999999998876543 2444454444443 22223344555          34445556555555 


Q ss_pred             cccccH---------HHHHHHHHh-CCeEEEEeCH---HH-H----HHHHhcCCCCEEEEEccCccccccCchHHH-HHH
Q psy933          169 MYGTKL---------ETIRRIHQE-GKIAILDVEP---QA-L----KILRTGEFSPFVVFIAAPQLQNLSDYDGSL-EKL  229 (330)
Q Consensus       169 ~YGts~---------~~i~~v~~~-gk~~vldv~~---~~-v----~~L~~~~~~p~vIfI~pps~~~l~~~~e~~-~rl  229 (330)
                      ..|...         +.+.+.++. |-.-.-+--|   .| .    --.|..-..|-++.+.-|- ..|   |... ..|
T Consensus        94 ~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF-gAL---DalTR~~l  169 (248)
T COG1116          94 ALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF-GAL---DALTREEL  169 (248)
T ss_pred             eehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc-chh---hHHHHHHH
Confidence            233322         123333332 1111111111   11 1    1123334578888887662 111   2111 234


Q ss_pred             HHHHHHHHhhccccceEEEecCCHHHHHH
Q psy933          230 AKESDILKSAYEHFFDLTVVNNDIEETIG  258 (330)
Q Consensus       230 ~~~~~~ie~~~~~~fD~vI~N~dle~a~~  258 (330)
                      .+....+-++  +-+..+++..|+++|+-
T Consensus       170 q~~l~~lw~~--~~~TvllVTHdi~EAv~  196 (248)
T COG1116         170 QDELLRLWEE--TRKTVLLVTHDVDEAVY  196 (248)
T ss_pred             HHHHHHHHHh--hCCEEEEEeCCHHHHHh
Confidence            4444444322  44899999999999873

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=97.74  E-value=2.4e-05  Score=79.98  Aligned_cols=77  Identities=21%  Similarity=0.258  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      ++..++|+||||+|||||++.|...++             |..|+  +||.|..-+ .+++.+.   +.++.|+..++..
T Consensus       360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~-------------p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~  425 (529)
T TIGR02868       360 PGERVAILGPSGSGKSTLLMLLTGLLD-------------PLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVR  425 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHH
Confidence            568999999999999999999987664             44554  478776655 5555543   4588888888888


Q ss_pred             Cc-cccc---cHHHHHHHHH
Q psy933          167 DA-MYGT---KLETIRRIHQ  182 (330)
Q Consensus       167 g~-~YGt---s~~~i~~v~~  182 (330)
                      +| .||.   +.+.+.++++
T Consensus       426 eNI~~g~~~~~~e~i~~al~  445 (529)
T TIGR02868       426 DNLRLGRPDATDEELWAALE  445 (529)
T ss_pred             HHHhccCCCCCHHHHHHHHH
Confidence            88 5764   3455555554

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.74  E-value=0.00031  Score=61.37  Aligned_cols=24  Identities=21%  Similarity=0.493  Sum_probs=21.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|+||+||||||++++|++.+.
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~   24 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFG   24 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            378999999999999999998764

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK13976 thymidylate kinase; Provisional

Probab=97.71  E-value=0.00028  Score=64.07  Aligned_cols=39  Identities=23%  Similarity=0.309  Sum_probs=30.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR  133 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr  133 (330)
                      .|+|-|.-||||||+++.|.+.+....+..-.++||.|.
T Consensus         2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~   40 (209)
T PRK13976          2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPG   40 (209)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCC
Confidence            689999999999999999998876432222346778775

>TIGR00436 era GTP-binding protein Era

Probab=97.69  E-value=0.0005  Score=64.45  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=30.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR  133 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr  133 (330)
                      .|+|+|++|||||||.++|..... ......|.|||.+-
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~-~~vs~~~~TTr~~i   39 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKI-SITSPKAQTTRNRI   39 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcE-eecCCCCCcccCcE
Confidence            488999999999999999997642 23466788999753

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=97.68  E-value=0.00016  Score=64.90  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=21.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      +.|+|+|+.||||||+++.|.+.
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~   24 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQ   24 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999999876

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.68  E-value=0.00013  Score=76.56  Aligned_cols=152  Identities=18%  Similarity=0.241  Sum_probs=85.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE-eecCccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG-THEDAMY  170 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~-~~~g~~Y  170 (330)
                      +++.|++.|.+|+||||+++.|.+....                  .|..+.+++.+.+...+..+.  .|. +-....|
T Consensus       459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~------------------~~~~~~~l~~D~~r~~l~~~~--~~~~~~r~~~~  518 (632)
T PRK05506        459 KPATVWFTGLSGSGKSTIANLVERRLHA------------------LGRHTYLLDGDNVRHGLNRDL--GFSDADRVENI  518 (632)
T ss_pred             CcEEEEecCCCCchHHHHHHHHHHHHHH------------------cCCCEEEEcChhhhhccCCCC--CCCHHHHHHHH
Confidence            4679999999999999999999876421                  234567777777776554321  010 0000112


Q ss_pred             cccHHHHHHHHHhCCeEEEEeC---HHHHHHHHhcC--CCCEEEEEccCccccccCchHHHHHHHHHH--H------HHH
Q psy933          171 GTKLETIRRIHQEGKIAILDVE---PQALKILRTGE--FSPFVVFIAAPQLQNLSDYDGSLEKLAKES--D------ILK  237 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~---~~~v~~L~~~~--~~p~vIfI~pps~~~l~~~~e~~~rl~~~~--~------~ie  237 (330)
                      ..-.......+++|..++++..   ..-...++...  ...++||+.+| .+.+.+.+.  +.++...  .      ...
T Consensus       519 ~~l~~~a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~-~e~~~~R~~--r~L~~~~~~~~l~~l~~~r  595 (632)
T PRK05506        519 RRVAEVARLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTP-LEVCEARDP--KGLYAKARAGEIKNFTGID  595 (632)
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCC-HHHHHhhCC--cchhhhccccccccccccc
Confidence            2222223334577988888764   22233333321  23478898886 344432210  1122111  0      111


Q ss_pred             hhcc--ccceEEEecC--CHHHHHHHHHHHHHH
Q psy933          238 SAYE--HFFDLTVVNN--DIEETIGILEKAIEE  266 (330)
Q Consensus       238 ~~~~--~~fD~vI~N~--dle~a~~~L~~~i~~  266 (330)
                      ..|.  ...|++|.++  +++++++++.+.+..
T Consensus       596 ~~y~~P~~a~~~Id~~~~s~~e~v~~Ii~~l~~  628 (632)
T PRK05506        596 SPYEAPENPELRLDTTGRSPEELAEQVLELLRR  628 (632)
T ss_pred             cCCCCCCCCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence            2344  4578888874  799999999888764

>PRK14527 adenylate kinase; Provisional

Probab=97.67  E-value=0.0002  Score=63.51  Aligned_cols=27  Identities=26%  Similarity=0.519  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ++..|+|+||+|+||||+++.|.+.+.
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~   31 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELG   31 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            457899999999999999999988763

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=97.66  E-value=5.1e-05  Score=86.44  Aligned_cols=91  Identities=15%  Similarity=0.186  Sum_probs=66.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCC-----------------------------------------cccccccccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDK-----------------------------------------YAYPVPHTTR  130 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~-----------------------------------------f~~~v~~TTR  130 (330)
                      .+..++|+||||||||||++.|...++-.                                         -...-+.+|+
T Consensus      1193 ~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 (1466)
T PTZ00265       1193 SKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTV 1272 (1466)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            56899999999999999999998876521                                         0112335677


Q ss_pred             CCCCccc--CCeeEEEecccchhhHH---hccceeeEEeecCc-cccc---cHHHHHHHHH
Q psy933          131 SPRSDEE--NGRAYYFISHDEMMSDI---AANQYLEYGTHEDA-MYGT---KLETIRRIHQ  182 (330)
Q Consensus       131 ~pr~~E~--~G~dy~fvs~~~f~~~i---~~~~fle~~~~~g~-~YGt---s~~~i~~v~~  182 (330)
                      .|..|++  ||+|..-++...+.+.+   .+..||..++...| .||.   +.+.|.++++
T Consensus      1273 ~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k 1333 (1466)
T PTZ00265       1273 FKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACK 1333 (1466)
T ss_pred             CCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHH
Confidence            7888876  99998888877776644   58889999988888 5883   4445555443

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.65  E-value=2.6e-05  Score=74.12  Aligned_cols=90  Identities=21%  Similarity=0.296  Sum_probs=57.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCcccccc-------ccccCCCCcccC-C-----------eeEEEecccchhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP-------HTTRSPRSDEEN-G-----------RAYYFISHDEMMS  152 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~-------~TTR~pr~~E~~-G-----------~dy~fvs~~~f~~  152 (330)
                      .+++.||+|+||||||||.|+|..... .-...|+       ||||..+.-..+ |           .+++.++.+++  
T Consensus       163 ~~~~svl~GqSGVGKSSLiN~L~p~~~-~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l--  239 (301)
T COG1162         163 AGKITVLLGQSGVGKSTLINALLPELN-QKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDL--  239 (301)
T ss_pred             cCCeEEEECCCCCcHHHHHHhhCchhh-hhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHH--
Confidence            568999999999999999999986543 2344444       899976655542 1           12333444433  


Q ss_pred             HHhccceeeEEeecCc-------cccccHHHHHHHHHhCCeE
Q psy933          153 DIAANQYLEYGTHEDA-------MYGTKLETIRRIHQEGKIA  187 (330)
Q Consensus       153 ~i~~~~fle~~~~~g~-------~YGts~~~i~~v~~~gk~~  187 (330)
                         ...|.|+.++.+.       +-+-+-++|+++++.|.+.
T Consensus       240 ---~~~F~ef~~~~~~CkFr~C~H~~EPgCav~~av~~g~i~  278 (301)
T COG1162         240 ---VQAFPEFAELARQCKFRDCTHTHEPGCAVKAAVEEGEIA  278 (301)
T ss_pred             ---HHHhHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHcCCCC
Confidence               3334444444332       2356778888888888653

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=97.65  E-value=0.001  Score=61.30  Aligned_cols=52  Identities=17%  Similarity=0.162  Sum_probs=39.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEeccc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHD  148 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~  148 (330)
                      .|+|+|++|||||||.++|....+  .....++||..|.+|.  .+|..+.+++..
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~--~v~~~~~tT~~~~~g~~~~~~~~i~l~Dtp   55 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKS--EVAAYEFTTLTCVPGVLEYKGAKIQLLDLP   55 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc--cccCCCCccccceEEEEEECCeEEEEEECC
Confidence            478999999999999999987654  3445678888877764  466666666543

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.64  E-value=4.6e-05  Score=78.94  Aligned_cols=79  Identities=20%  Similarity=0.344  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHH---hccceeeEEeecCc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDI---AANQYLEYGTHEDA  168 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~g~  168 (330)
                      ++..++|+||||+|||||++.|...+|.  .+.|          -.+|.+..-++.+.+.+.+   .++.|+..++..+|
T Consensus       375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p~--~G~I----------~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN  442 (588)
T PRK11174        375 AGQRIALVGPSGAGKTSLLNALLGFLPY--QGSL----------KINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN  442 (588)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC--CcEE----------EECCEecccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence            5689999999999999999999877642  2222          2488888777777766644   58889988988888


Q ss_pred             -cccc---cHHHHHHHHH
Q psy933          169 -MYGT---KLETIRRIHQ  182 (330)
Q Consensus       169 -~YGt---s~~~i~~v~~  182 (330)
                       .||.   +.+.+.++++
T Consensus       443 I~~g~~~~~~eei~~al~  460 (588)
T PRK11174        443 VLLGNPDASDEQLQQALE  460 (588)
T ss_pred             hhcCCCCCCHHHHHHHHH
Confidence             5773   3455555543

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=97.63  E-value=0.00011  Score=66.03  Aligned_cols=62  Identities=11%  Similarity=0.014  Sum_probs=38.8

Q ss_pred             CCEEEEEccCcccccc---C----chHHH-HHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHhc
Q psy933          205 SPFVVFIAAPQLQNLS---D----YDGSL-EKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEELH  268 (330)
Q Consensus       205 ~p~vIfI~pps~~~l~---~----~~e~~-~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~~  268 (330)
                      .-.+|||.+|.-..++   .    +.+++ .|+..+.  .........|++|.|+ ++++...++..+++++.
T Consensus       122 ~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~~Q~--~~~~k~~~aD~vI~N~~~~~~l~~~v~~l~~~~~  192 (196)
T PRK14732        122 CDATVTVDSDPEESILRTISRDGMKKEDVLARIASQL--PITEKLKRADYIVRNDGNREGLKEECKILYSTLL  192 (196)
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcC--CHHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            4678888877543332   1    22222 2332221  1123456799999998 99999999999887764

>PRK07261 topology modulation protein; Provisional

Probab=97.63  E-value=0.00018  Score=62.99  Aligned_cols=23  Identities=17%  Similarity=0.560  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+|+||+|||||++.|.+.+
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            48899999999999999998764

>KOG0058|consensus

Probab=97.62  E-value=3e-05  Score=80.73  Aligned_cols=78  Identities=22%  Similarity=0.346  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      ++..++|+||||+||||+++.|.+.|.             |..|.  .||+|..-++..-..+.   +.+..-|.-+...
T Consensus       493 pGe~vALVGPSGsGKSTiasLL~rfY~-------------PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~  559 (716)
T KOG0058|consen  493 PGEVVALVGPSGSGKSTIASLLLRFYD-------------PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR  559 (716)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC-------------CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence            457999999999999999998876653             55564  48887666666555543   3466677777888


Q ss_pred             Cc-cccccHHHHHHHHH
Q psy933          167 DA-MYGTKLETIRRIHQ  182 (330)
Q Consensus       167 g~-~YGts~~~i~~v~~  182 (330)
                      +| .||....+-+++.+
T Consensus       560 eNI~YG~~~~t~e~i~~  576 (716)
T KOG0058|consen  560 ENIAYGLDNATDEEIEA  576 (716)
T ss_pred             HHHhcCCCCCCHHHHHH
Confidence            78 79977655555543

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.60  E-value=7.4e-05  Score=65.72  Aligned_cols=51  Identities=12%  Similarity=0.285  Sum_probs=42.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhhHHh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMSDIA  155 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~~i~  155 (330)
                      .+-.++|+||||||||||.+.++...+             |..|++  .|.+|.-.+.+.|.+.+.
T Consensus        28 ~Ge~iaitGPSG~GKStllk~va~Lis-------------p~~G~l~f~Ge~vs~~~pea~Rq~Vs   80 (223)
T COG4619          28 AGEFIAITGPSGCGKSTLLKIVASLIS-------------PTSGTLLFEGEDVSTLKPEAYRQQVS   80 (223)
T ss_pred             CCceEEEeCCCCccHHHHHHHHHhccC-------------CCCceEEEcCccccccChHHHHHHHH
Confidence            456899999999999999999987765             556665  788888889999887654

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.59  E-value=0.00035  Score=62.51  Aligned_cols=103  Identities=15%  Similarity=0.212  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc-ce-----eeEEee
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN-QY-----LEYGTH  165 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~-~f-----le~~~~  165 (330)
                      .+..++|.|++|||||++++.+...+.                    +.++..++.++|...+..- .+     .+....
T Consensus        14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~--------------------~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~   73 (199)
T PF06414_consen   14 KPTLIIIAGQPGSGKSTLARQLLEEFG--------------------GGGIVVIDADEFRQFHPDYDELLKADPDEASEL   73 (199)
T ss_dssp             S-EEEEEES-TTSTTHHHHHHHHHHT---------------------TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHhhhhcc--------------------CCCeEEEehHHHHHhccchhhhhhhhhhhhHHH
Confidence            456788889999999999999988751                    1134456666665443110 00     000000


Q ss_pred             cCc-cccccHHHHHHHHHhCCeEEEEeCH---HH----HHHHHhcCCCCEEEEEccC
Q psy933          166 EDA-MYGTKLETIRRIHQEGKIAILDVEP---QA----LKILRTGEFSPFVVFIAAP  214 (330)
Q Consensus       166 ~g~-~YGts~~~i~~v~~~gk~~vldv~~---~~----v~~L~~~~~~p~vIfI~pp  214 (330)
                      ... ..-.....++.+++++..++++-..   +.    ++.++..+++..++||..|
T Consensus        74 ~~~~a~~~~~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~  130 (199)
T PF06414_consen   74 TQKEASRLAEKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVP  130 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECC
Confidence            000 0112334567778889999998643   22    3466677888888888865

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=97.59  E-value=0.00095  Score=63.83  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=22.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      -.|+|.|||||||||++.+|+..+.
T Consensus        93 ~iIlI~G~sgsGKStlA~~La~~l~  117 (301)
T PRK04220         93 IIILIGGASGVGTSTIAFELASRLG  117 (301)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3688899999999999999998874

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.57  E-value=7.4e-05  Score=60.52  Aligned_cols=53  Identities=25%  Similarity=0.411  Sum_probs=38.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccc
Q psy933           96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDE  149 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~  149 (330)
                      |+|+|++|+|||||.+.|..... .-....+.||+.+..+  +.++..+.|+|..-
T Consensus         2 V~iiG~~~~GKSTlin~l~~~~~-~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG   56 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGKKL-AKVSNIPGTTRDPVYGQFEYNNKKFILVDTPG   56 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSTS-SEESSSTTSSSSEEEEEEEETTEEEEEEESSS
T ss_pred             EEEECCCCCCHHHHHHHHhcccc-ccccccccceeeeeeeeeeeceeeEEEEeCCC
Confidence            78999999999999999997432 2345567888887443  35666666766554

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=97.57  E-value=0.00038  Score=63.09  Aligned_cols=29  Identities=24%  Similarity=0.244  Sum_probs=24.0

Q ss_pred             ccccceEEEecC--CHHHHHHHHHHHHHHhc
Q psy933          240 YEHFFDLTVVNN--DIEETIGILEKAIEELH  268 (330)
Q Consensus       240 ~~~~fD~vI~N~--dle~a~~~L~~~i~~~~  268 (330)
                      .....|+||.|+  +++++-.++..+++.+.
T Consensus       170 k~~~aD~VI~N~g~~~~~l~~~~~~~~~~~~  200 (204)
T PRK14733        170 REKIADFVIDNTELTDQELESKLITTINEIT  200 (204)
T ss_pred             HHHhCCEEEECcCCCHHHHHHHHHHHHHHHH
Confidence            346789999997  68999999999988764

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=97.55  E-value=7.1e-05  Score=79.07  Aligned_cols=78  Identities=15%  Similarity=0.230  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~  166 (330)
                      ++..++|+||||+|||||++.|...++             |..|+  .||++..-++.+.+.+.+   .++.++..++..
T Consensus       478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~  544 (686)
T TIGR03797       478 PGEFVAIVGPSGSGKSTLLRLLLGFET-------------PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIF  544 (686)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC-------------CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHH
Confidence            568999999999999999999987764             45554  488888878877776644   477788777777


Q ss_pred             Ccc-cc--ccHHHHHHHHH
Q psy933          167 DAM-YG--TKLETIRRIHQ  182 (330)
Q Consensus       167 g~~-YG--ts~~~i~~v~~  182 (330)
                      +|. +|  .+.+.+.++++
T Consensus       545 eNi~~~~~~~~e~i~~al~  563 (686)
T TIGR03797       545 ENIAGGAPLTLDEAWEAAR  563 (686)
T ss_pred             HHHhcCCCCCHHHHHHHHH
Confidence            773 55  34444444443

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.54  E-value=0.00024  Score=67.08  Aligned_cols=151  Identities=18%  Similarity=0.232  Sum_probs=76.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTK  173 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts  173 (330)
                      +.|+|+|.+||||||+++.|.+.+.+                  .|.+.+.++.+.+.  +..+.|.. .......-|.-
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~------------------~~~~v~~i~~~~~~--~~~~~y~~-~~~Ek~~R~~l   60 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEE------------------KGKEVVIISDDSLG--IDRNDYAD-SKKEKEARGSL   60 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHH------------------TT--EEEE-THHHH---TTSSS---GGGHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHh------------------cCCEEEEEcccccc--cchhhhhc-hhhhHHHHHHH
Confidence            47999999999999999999987653                  34556677766554  33433321 11122344666


Q ss_pred             HHHHHHHHHhCCeEEEEeCH--HHHH----HH-HhcCCCCEEEEEccCcccccc-----C-----chHHHHHHHHHHHHH
Q psy933          174 LETIRRIHQEGKIAILDVEP--QALK----IL-RTGEFSPFVVFIAAPQLQNLS-----D-----YDGSLEKLAKESDIL  236 (330)
Q Consensus       174 ~~~i~~v~~~gk~~vldv~~--~~v~----~L-~~~~~~p~vIfI~pps~~~l~-----~-----~~e~~~rl~~~~~~i  236 (330)
                      +.+|+..+.++.++|+|=.-  .|.+    .+ |..+..-.+||+..|--..+.     .     .++.+.+|....+.-
T Consensus        61 ~s~v~r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P  140 (270)
T PF08433_consen   61 KSAVERALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEP  140 (270)
T ss_dssp             HHHHHHHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---T
T ss_pred             HHHHHHhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCC
Confidence            77888888888777776442  4432    12 223444557999987332222     1     245567777766554


Q ss_pred             Hhh-ccccceEEEecCCHHHHHHHHHHHHH
Q psy933          237 KSA-YEHFFDLTVVNNDIEETIGILEKAIE  265 (330)
Q Consensus       237 e~~-~~~~fD~vI~N~dle~a~~~L~~~i~  265 (330)
                      ... -+....++|.+++-+..+++|..+|.
T Consensus       141 ~~~nrWD~plf~i~~~~~~~~~~~I~~~l~  170 (270)
T PF08433_consen  141 DPKNRWDSPLFTIDSSDEELPLEEIWNALF  170 (270)
T ss_dssp             TSS-GGGS-SEEEE-TTS---HHHHHHHHH
T ss_pred             CCCCCccCCeEEEecCCCCCCHHHHHHHHH
Confidence            322 13445566664544455566666553

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.54  E-value=0.0027  Score=63.20  Aligned_cols=156  Identities=12%  Similarity=0.161  Sum_probs=79.0

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHh-ccceeeEEeecCc
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA-ANQYLEYGTHEDA  168 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~-~~~fle~~~~~g~  168 (330)
                      ++..+.|+|+|++|+|||||++.|++.+.-.   +++-                 +.++-..+... .+.-+.+..+...
T Consensus       216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~---~v~E-----------------~~R~~~~~~~~~~~~~l~~~D~~~i  275 (399)
T PRK08099        216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT---SAWE-----------------YGREYVFSHLGGDEMALQYSDYDKI  275 (399)
T ss_pred             hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC---eeee-----------------ccHHHHHHhhcCCccCCChhhhHHH
Confidence            3445789999999999999999999875311   1111                 11111111110 1112222223333


Q ss_pred             cccccHHHHHHHHHhCCeEEEEeCHHHHHH-HHhc--------------CCCCEEEEEccCcc----ccccCc-hHHHH-
Q psy933          169 MYGTKLETIRRIHQEGKIAILDVEPQALKI-LRTG--------------EFSPFVVFIAAPQL----QNLSDY-DGSLE-  227 (330)
Q Consensus       169 ~YGts~~~i~~v~~~gk~~vldv~~~~v~~-L~~~--------------~~~p~vIfI~pps~----~~l~~~-~e~~~-  227 (330)
                      .+|.....-..+....+.+++|.+.-.... ++..              .-+.. +|+.+|+.    +-++.. +++.+ 
T Consensus       276 a~~~~~~~~~~~~~a~~~~f~Dt~~~~t~~y~~~y~g~~~p~l~~~~~~~ryDl-vlll~pd~Pwv~DGlR~~~D~e~R~  354 (399)
T PRK08099        276 ALGHAQYIDFAVKYANKVAFIDTDFVTTQAFCKKYEGREHPFVQALIDEYRFDL-TILLENNTPWVADGLRSLGSSVDRK  354 (399)
T ss_pred             HhhhHHHHHHHHHhcCCeEEEeCChHHHHHHHHHhCCCCCHHHHHHHHhCCCCE-EEEcCCCCCcccCCcccCCCHHHHH
Confidence            455555444445556788888887543222 2211              11223 44443332    223322 22222 


Q ss_pred             HHHHHHHHHHhhccccceEEEec-CCHHHHHHHHHHHHHHhc
Q psy933          228 KLAKESDILKSAYEHFFDLTVVN-NDIEETIGILEKAIEELH  268 (330)
Q Consensus       228 rl~~~~~~ie~~~~~~fD~vI~N-~dle~a~~~L~~~i~~~~  268 (330)
                      .+......+-..  .-+.+++++ .+.++=+.+-.++|+.+-
T Consensus       355 ~f~~~l~~~l~~--~g~~~v~l~~g~~~eR~~~a~~~i~~~l  394 (399)
T PRK08099        355 RFQNLLKEMLKE--NNIEYVHVESPDYDKRYLRCVELVDQML  394 (399)
T ss_pred             HHHHHHHHHHHH--cCCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence            233222222122  346688885 689888888888887764

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.53  E-value=0.00014  Score=70.86  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=21.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .+..+.|+||||||||||.+.|+-.
T Consensus        30 ~Gef~~lLGPSGcGKTTlLR~IAGf   54 (352)
T COG3842          30 KGEFVTLLGPSGCGKTTLLRMIAGF   54 (352)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999988743

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=97.53  E-value=9.9e-05  Score=76.34  Aligned_cols=78  Identities=22%  Similarity=0.277  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      ++..++|+||||+|||||++.|...++             |..|+  .+|.++.-++.+.+.+.   +.++.|+..++..
T Consensus       368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~-------------p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~  434 (582)
T PRK11176        368 AGKTVALVGRSGSGKSTIANLLTRFYD-------------IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA  434 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccC-------------CCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHH
Confidence            567899999999999999999988765             34454  38887776666666553   3577888888887


Q ss_pred             Cc-cccc----cHHHHHHHHH
Q psy933          167 DA-MYGT----KLETIRRIHQ  182 (330)
Q Consensus       167 g~-~YGt----s~~~i~~v~~  182 (330)
                      .| .||.    +.+.+.++++
T Consensus       435 ~Ni~~~~~~~~~~~~i~~al~  455 (582)
T PRK11176        435 NNIAYARTEQYSREQIEEAAR  455 (582)
T ss_pred             HHHhcCCCCCCCHHHHHHHHH
Confidence            77 4653    3445555544

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.50  E-value=0.00085  Score=60.70  Aligned_cols=24  Identities=29%  Similarity=0.574  Sum_probs=21.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|+||+||||||+++.|.+.+.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~   25 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYG   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            488999999999999999998764

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=97.50  E-value=0.00036  Score=64.88  Aligned_cols=86  Identities=12%  Similarity=0.215  Sum_probs=50.2

Q ss_pred             CeEEEEeCHHHHHH-HHhcCCCCEEEEEccCcccccc---C----chHHH-HHHHHHHHHHHhhccccceEEEecC---C
Q psy933          185 KIAILDVEPQALKI-LRTGEFSPFVVFIAAPQLQNLS---D----YDGSL-EKLAKESDILKSAYEHFFDLTVVNN---D  252 (330)
Q Consensus       185 k~~vldv~~~~v~~-L~~~~~~p~vIfI~pps~~~l~---~----~~e~~-~rl~~~~~~ie~~~~~~fD~vI~N~---d  252 (330)
                      ..||+|+-.- .+. + ...+.-.+|+|.+|....++   .    +.+++ +|+..+..  .......+|+||.|+   |
T Consensus       118 ~~vv~evPLL-~E~~~-~~~~~D~iv~V~a~~e~ri~RL~~R~g~s~eea~~Ri~~Q~~--~~ek~~~aD~VI~N~~~g~  193 (244)
T PTZ00451        118 LIVVLDAPTL-FETKT-FTYFVSASVVVSCSEERQIERLRKRNGFSKEEALQRIGSQMP--LEEKRRLADYIIENDSADD  193 (244)
T ss_pred             CEEEEEechh-hccCc-hhhcCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhCCC--HHHHHHhCCEEEECCCCCC
Confidence            3778777542 111 1 11234678888877433222   1    22333 33332211  123457799999998   8


Q ss_pred             HHHHHHHHHHHHHHhc-CCCccc
Q psy933          253 IEETIGILEKAIEELH-TTPQWI  274 (330)
Q Consensus       253 le~a~~~L~~~i~~~~-~~~~Wv  274 (330)
                      +++...++..++..+. ..|.|+
T Consensus       194 ~~~L~~~v~~~~~~~~~~~~~~~  216 (244)
T PTZ00451        194 LDELRGSVCDCVAWMSRQSNKRL  216 (244)
T ss_pred             HHHHHHHHHHHHHHHHhhCChHH
Confidence            9999999999998764 345554

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.49  E-value=0.0017  Score=64.84  Aligned_cols=91  Identities=16%  Similarity=0.267  Sum_probs=69.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY  170 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y  170 (330)
                      +--|+|+|-+.||||||.|+|+.+.. .....++-|||.+=..  |.+|..|.+++..-+.+...-.+=+|+.       
T Consensus       178 ~ikiaiiGrPNvGKSsLiN~ilgeeR-~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~-------  249 (444)
T COG1160         178 PIKIAIIGRPNVGKSSLINAILGEER-VIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKY-------  249 (444)
T ss_pred             ceEEEEEeCCCCCchHHHHHhccCce-EEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEE-------
Confidence            45799999999999999999998865 5888899999998665  4579999999999888765544445552       


Q ss_pred             cccHHHHHHHHHhCCeEEEEeCH
Q psy933          171 GTKLETIRRIHQEGKIAILDVEP  193 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~~  193 (330)
                      .. ..+ ..+++...+|+|.+|.
T Consensus       250 Sv-~rt-~~aI~~a~vvllviDa  270 (444)
T COG1160         250 SV-ART-LKAIERADVVLLVIDA  270 (444)
T ss_pred             ee-hhh-HhHHhhcCEEEEEEEC
Confidence            22 222 4456677888888764

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.49  E-value=0.0017  Score=57.46  Aligned_cols=24  Identities=25%  Similarity=0.603  Sum_probs=21.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|+|||||||||++++|.+.++
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~   25 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLG   25 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            488999999999999999998754

>PRK06761 hypothetical protein; Provisional

Probab=97.49  E-value=0.00019  Score=68.04  Aligned_cols=63  Identities=14%  Similarity=0.224  Sum_probs=43.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCcccccccccc--CCCCcccCCeeEEEecccchhhHHhccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTR--SPRSDEENGRAYYFISHDEMMSDIAANQ  158 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR--~pr~~E~~G~dy~fvs~~~f~~~i~~~~  158 (330)
                      .+.|+|.||+|+|||||++.|.+..... +..+..++.  .+++.+..|..+  ++.++|...+....
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~-g~~v~~~~~~~~~~p~d~~~~~~--~~~eer~~~l~~~~   67 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQN-GIEVELYLEGNLDHPADYDGVAC--FTKEEFDRLLSNYP   67 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcC-ceEEEEEecCCCCCchhhccccC--CCHHHHHHHHHhhh
Confidence            4689999999999999999999887643 223333322  346667766544  47788887776554

>COG4639 Predicted kinase [General function prediction only]

Probab=97.49  E-value=0.0012  Score=57.14  Aligned_cols=133  Identities=16%  Similarity=0.210  Sum_probs=71.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCc---c
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDA---M  169 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~---~  169 (330)
                      +..|+|+|+|||||||+++.....++                         .+|.+.|...+-.....|-  ..+|   .
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n~~~~~-------------------------~lsld~~r~~lg~~~~~e~--sqk~~~~~   54 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKENFLQNY-------------------------VLSLDDLRLLLGVSASKEN--SQKNDELV   54 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHhCCCcc-------------------------eecHHHHHHHhhhchhhhh--ccccHHHH
Confidence            56899999999999999986654322                         2333444432210000000  0010   1


Q ss_pred             ccccHHHHHHHHHhCCeEEEEeCH---HHHHHHHh----cCCCCEEEEEccCcccccc-----C---chHHHHHHHHHHH
Q psy933          170 YGTKLETIRRIHQEGKIAILDVEP---QALKILRT----GEFSPFVVFIAAPQLQNLS-----D---YDGSLEKLAKESD  234 (330)
Q Consensus       170 YGts~~~i~~v~~~gk~~vldv~~---~~v~~L~~----~~~~p~vIfI~pps~~~l~-----~---~~e~~~rl~~~~~  234 (330)
                      .-.-....+.-+++|++.|+|...   +-.+.+..    .+..+++|.+..|-..-+.     +   ..+-+.++.+...
T Consensus        55 ~~~l~~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~Rqv~~~VI~r~~r~~~  134 (168)
T COG4639          55 WDILYKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRERQVPEEVIPRMLRETI  134 (168)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccchhCCHHHHHHHHHHHH
Confidence            123344556677899999998865   55444442    4677888888776322221     1   1334455555422


Q ss_pred             HHHhhccccceEEEecCCHH
Q psy933          235 ILKSAYEHFFDLTVVNNDIE  254 (330)
Q Consensus       235 ~ie~~~~~~fD~vI~N~dle  254 (330)
                      .++  -+.-|-++..+...+
T Consensus       135 ~~l--~~e~~~~~~~~~s~e  152 (168)
T COG4639         135 DLL--EKEPFRYVWTLSSPE  152 (168)
T ss_pred             hhc--cCCCeEEEEecCCHH
Confidence            222  234456666665444

>cd01898 Obg Obg subfamily

Probab=97.47  E-value=0.0024  Score=54.37  Aligned_cols=52  Identities=17%  Similarity=0.231  Sum_probs=34.3

Q ss_pred             EEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCe-eEEEecccc
Q psy933           96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGR-AYYFISHDE  149 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~-dy~fvs~~~  149 (330)
                      |+|+|++|||||||.++|....+  -....++||+.|..+-  .++. .+.+++...
T Consensus         3 v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG   57 (170)
T cd01898           3 VGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRVDDGRSFVVADIPG   57 (170)
T ss_pred             eEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEcCCCCeEEEEecCc
Confidence            78999999999999999986543  1223456777775553  2332 445555443

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG3354|consensus

Probab=97.47  E-value=0.00067  Score=58.79  Aligned_cols=80  Identities=18%  Similarity=0.255  Sum_probs=48.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEe-cccchhhHHhccceeeEEeecCccccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFI-SHDEMMSDIAANQYLEYGTHEDAMYGT  172 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fv-s~~~f~~~i~~~~fle~~~~~g~~YGt  172 (330)
                      -.|+++|++|+||||+.+.|.+.+.-.|               .+|-|||-- .++.|.+.+.-++    ...-+.+--.
T Consensus        13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F---------------~dgDd~Hp~~NveKM~~GipLnD----~DR~pWL~~i   73 (191)
T KOG3354|consen   13 YVIVVMGVSGSGKSTIGKALSEELGLKF---------------IDGDDLHPPANVEKMTQGIPLND----DDRWPWLKKI   73 (191)
T ss_pred             eeEEEEecCCCChhhHHHHHHHHhCCcc---------------cccccCCCHHHHHHHhcCCCCCc----ccccHHHHHH
Confidence            3899999999999999999999876444               567777753 3455554333222    1111111111


Q ss_pred             cHHHHHHHHHhCCeEEEEeCH
Q psy933          173 KLETIRRIHQEGKIAILDVEP  193 (330)
Q Consensus       173 s~~~i~~v~~~gk~~vldv~~  193 (330)
                       -.+....++.|+-+||-++.
T Consensus        74 -~~~~~~~l~~~q~vVlACSa   93 (191)
T KOG3354|consen   74 -AVELRKALASGQGVVLACSA   93 (191)
T ss_pred             -HHHHHHHhhcCCeEEEEhHH
Confidence             12233344578999988863

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.46  E-value=0.0001  Score=59.89  Aligned_cols=23  Identities=17%  Similarity=0.562  Sum_probs=21.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+|||||||||+++.|++.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999999875

...

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=97.46  E-value=0.0001  Score=78.35  Aligned_cols=78  Identities=19%  Similarity=0.334  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~  166 (330)
                      ++..++|+||||+|||||++.|...++             |..|+  +||.+..-++...+.+.+   .++.++..++..
T Consensus       506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIr  572 (711)
T TIGR00958       506 PGEVVALVGPSGSGKSTVAALLQNLYQ-------------PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVR  572 (711)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccC-------------CCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHH
Confidence            568999999999999999999988765             44454  488777666666655543   477788788887


Q ss_pred             Cc-ccccc---HHHHHHHHH
Q psy933          167 DA-MYGTK---LETIRRIHQ  182 (330)
Q Consensus       167 g~-~YGts---~~~i~~v~~  182 (330)
                      +| .||.+   .+.+.++++
T Consensus       573 eNI~~g~~~~~~e~i~~al~  592 (711)
T TIGR00958       573 ENIAYGLTDTPDEEIMAAAK  592 (711)
T ss_pred             HHHhcCCCCCCHHHHHHHHH
Confidence            77 46743   344444443

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=97.46  E-value=0.00038  Score=69.55  Aligned_cols=88  Identities=16%  Similarity=0.303  Sum_probs=62.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY  170 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y  170 (330)
                      +-.+||+|+|.||||+|.|.|+.+.. -..+.+|-|||.-=+.  .++|...+.++..-.+   .....+|-       -
T Consensus       217 G~kvvIiG~PNvGKSSLLNaL~~~d~-AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiR---et~d~VE~-------i  285 (454)
T COG0486         217 GLKVVIIGRPNVGKSSLLNALLGRDR-AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIR---ETDDVVER-------I  285 (454)
T ss_pred             CceEEEECCCCCcHHHHHHHHhcCCc-eEecCCCCCccceEEEEEEECCEEEEEEecCCcc---cCccHHHH-------H
Confidence            35799999999999999999999876 4888899999987555  4589988888876654   23333332       2


Q ss_pred             cccHHHHHHHHHhCCeEEEEeCH
Q psy933          171 GTKLETIRRIHQEGKIAILDVEP  193 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~~  193 (330)
                      |.-++  .+.+++...+++-+|.
T Consensus       286 GIeRs--~~~i~~ADlvL~v~D~  306 (454)
T COG0486         286 GIERA--KKAIEEADLVLFVLDA  306 (454)
T ss_pred             HHHHH--HHHHHhCCEEEEEEeC
Confidence            33332  4455666666665553

>PLN02422 dephospho-CoA kinase

Probab=97.46  E-value=0.00034  Score=64.59  Aligned_cols=33  Identities=18%  Similarity=0.414  Sum_probs=27.4

Q ss_pred             cccceEEEecC-CHHHHHHHHHHHHHHhcCCCcc
Q psy933          241 EHFFDLTVVNN-DIEETIGILEKAIEELHTTPQW  273 (330)
Q Consensus       241 ~~~fD~vI~N~-dle~a~~~L~~~i~~~~~~~~W  273 (330)
                      ....|++|.|+ ++++...++..+++.+...-.|
T Consensus       168 ~~~AD~VI~N~gs~e~L~~qv~~ll~~l~~~~~~  201 (232)
T PLN02422        168 RSKADIVIDNSGSLEDLKQQFQKVLEKIRAPLTW  201 (232)
T ss_pred             HhhCCEEEECCCCHHHHHHHHHHHHHHHhcchHH
Confidence            46689999999 9999999999999998744444

>PRK00089 era GTPase Era; Reviewed

Probab=97.46  E-value=0.0017  Score=61.28  Aligned_cols=54  Identities=20%  Similarity=0.325  Sum_probs=36.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEeccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHD  148 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~  148 (330)
                      -.|+|+|++|||||||.+.|+.... ......+.|||..-.+-.  ++..+.|++..
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~-~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTP   61 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKI-SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTP   61 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCce-eecCCCCCcccccEEEEEEcCCceEEEEECC
Confidence            4799999999999999999986532 234556788886533311  23455565543

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.45  E-value=8.6e-05  Score=68.96  Aligned_cols=92  Identities=16%  Similarity=0.221  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccc-------cccccCCCCcccCCeeEEEecccchhh--------HHhc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPV-------PHTTRSPRSDEENGRAYYFISHDEMMS--------DIAA  156 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v-------~~TTR~pr~~E~~G~dy~fvs~~~f~~--------~i~~  156 (330)
                      ..+.++|+|+||||||||+|.|+...-.. ...+       .||||....-..+|  .+.+|..-|..        .--.
T Consensus       119 ~~~~~~~~G~sgvGKStLiN~L~~~~~~~-t~~i~~~~~~G~hTT~~~~l~~l~~--~~liDtPG~~~~~l~~~~~~~~~  195 (245)
T TIGR00157       119 QNRISVFAGQSGVGKSSLINALDPSVKQQ-VNDISSKLGLGKHTTTHVELFHFHG--GLIADTPGFNEFGLWHLEPEQLT  195 (245)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhhhhhcc-ccceeccCCCCCCcCCceEEEEcCC--cEEEeCCCccccCCCCCCHHHHH
Confidence            34799999999999999999999754321 2223       37998765554433  24444332221        1123


Q ss_pred             cceeeEEeecCc-------cccccHHHHHHHHHhCCe
Q psy933          157 NQYLEYGTHEDA-------MYGTKLETIRRIHQEGKI  186 (330)
Q Consensus       157 ~~fle~~~~~g~-------~YGts~~~i~~v~~~gk~  186 (330)
                      ..|.|+.++.+.       +-+-+-.+|++++++|++
T Consensus       196 ~~f~e~~~~~~~C~f~~C~H~~ep~C~v~~a~~~g~i  232 (245)
T TIGR00157       196 QGFVEFRDYLGECKFRDCLHQSEPGCAVRQAVEQGEI  232 (245)
T ss_pred             HhCHHHHHHhCCCCCCCCccCCCCCChHHHHHHcCCC
Confidence            344444433221       335678889999988873

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK06217 hypothetical protein; Validated

Probab=97.45  E-value=0.00039  Score=61.28  Aligned_cols=23  Identities=22%  Similarity=0.482  Sum_probs=21.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+|+||||||||+++|.+.+
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l   25 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERL   25 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48999999999999999999876

>KOG1191|consensus

Probab=97.43  E-value=0.00026  Score=70.98  Aligned_cols=89  Identities=22%  Similarity=0.334  Sum_probs=65.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY  170 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y  170 (330)
                      +--|+|+||++||||+|.|.|.++.- -+.+++|-|||..=+-  +++|+....+|..-..+  ..++-+|.       -
T Consensus       268 gl~iaIvGrPNvGKSSLlNaL~~~dr-sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe--~~~~~iE~-------~  337 (531)
T KOG1191|consen  268 GLQIAIVGRPNVGKSSLLNALSREDR-SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE--ESNDGIEA-------L  337 (531)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCCc-eEeCCCCCcchhhheeEeecCCeEEEEEecccccc--ccCChhHH-------H
Confidence            45799999999999999999998765 6899999999987554  46999988888876654  23332322       2


Q ss_pred             cccHHHHHHHHHhCCeEEEEeCH
Q psy933          171 GTKLETIRRIHQEGKIAILDVEP  193 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~~  193 (330)
                      |  ..--++.+....+|++.+++
T Consensus       338 g--I~rA~k~~~~advi~~vvda  358 (531)
T KOG1191|consen  338 G--IERARKRIERADVILLVVDA  358 (531)
T ss_pred             h--HHHHHHHHhhcCEEEEEecc
Confidence            2  33335566677788888877

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.41  E-value=0.00064  Score=58.18  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+|++|+|||||++.|....
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l   23 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKL   23 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHH
Confidence            37899999999999999998875

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR00017 cmk cytidylate kinase

Probab=97.41  E-value=0.0014  Score=59.82  Aligned_cols=26  Identities=15%  Similarity=0.397  Sum_probs=22.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ...|.|.||+|+||||+++.|.+.+.
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~   27 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLG   27 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999998764

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>TIGR01351 adk adenylate kinases

Probab=97.40  E-value=0.001  Score=59.92  Aligned_cols=22  Identities=36%  Similarity=0.671  Sum_probs=20.5

Q ss_pred             EEEEcCCCccHHHHHHHHHhhC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      |+|+||+||||||++++|.+.+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKY   23 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7899999999999999999876

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>TIGR00152 dephospho-CoA kinase

Probab=97.39  E-value=0.00036  Score=61.72  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+|..|+||||+++.|.+..
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~   23 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKY   23 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc
Confidence            37899999999999999998764

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.00019  Score=73.32  Aligned_cols=79  Identities=24%  Similarity=0.339  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      .++.++|+||||+|||||.+.|+...+             |..||  +||.+-.-++.+.+.+.   +.++.++..++.+
T Consensus       346 ~g~~talvG~SGaGKSTLl~lL~G~~~-------------~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTir  412 (559)
T COG4988         346 AGQLTALVGASGAGKSTLLNLLLGFLA-------------PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIR  412 (559)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcCC-------------CCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHH
Confidence            568999999999999999999987665             33454  48888777888777764   4588999999998


Q ss_pred             Ccc-cc---ccHHHHHHHHHh
Q psy933          167 DAM-YG---TKLETIRRIHQE  183 (330)
Q Consensus       167 g~~-YG---ts~~~i~~v~~~  183 (330)
                      +|. .|   .+.+.|.+++++
T Consensus       413 eNi~l~~~~~s~e~i~~al~~  433 (559)
T COG4988         413 ENILLARPDASDEEIIAALDQ  433 (559)
T ss_pred             HHhhccCCcCCHHHHHHHHHH
Confidence            883 33   345666666653

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.38  E-value=0.0016  Score=62.94  Aligned_cols=26  Identities=31%  Similarity=0.531  Sum_probs=23.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+.|+|+|++|+|||||++.|...+.
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~  187 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFN  187 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            56899999999999999999998753

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK13973 thymidylate kinase; Provisional

Probab=97.37  E-value=0.0015  Score=59.20  Aligned_cols=39  Identities=23%  Similarity=0.411  Sum_probs=29.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR  133 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr  133 (330)
                      ++.|||-|+.||||||++++|.+.+.. -+..+ ++|+.|.
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~-~g~~~-~~~~~p~   41 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRA-AGYDV-LVTREPG   41 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeE-EEEECCC
Confidence            578999999999999999999988643 12222 5566664

>PRK12338 hypothetical protein; Provisional

Probab=97.37  E-value=0.0013  Score=63.46  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=22.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..|+|.|+||+||||++..|++..+
T Consensus         5 ~ii~i~G~sGsGKST~a~~la~~l~   29 (319)
T PRK12338          5 YVILIGSASGIGKSTIASELARTLN   29 (319)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCC
Confidence            5788899999999999999998864

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=97.34  E-value=0.00013  Score=77.32  Aligned_cols=67  Identities=21%  Similarity=0.353  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      ++..|+|+||||+|||||++.|...++             |..|+  +||.+..-++.+.+.+.   +.++.++..++..
T Consensus       499 ~G~~vaIvG~SGsGKSTLlklL~gl~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~  565 (708)
T TIGR01193       499 MNSKTTIVGMSGSGKSTLAKLLVGFFQ-------------ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSIL  565 (708)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC-------------CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHH
Confidence            568999999999999999999987764             44554  48877766676666654   3477788777777


Q ss_pred             Cc-ccc
Q psy933          167 DA-MYG  171 (330)
Q Consensus       167 g~-~YG  171 (330)
                      +| .||
T Consensus       566 eNi~l~  571 (708)
T TIGR01193       566 ENLLLG  571 (708)
T ss_pred             HHHhcc
Confidence            77 355

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.33  E-value=0.00084  Score=49.90  Aligned_cols=23  Identities=17%  Similarity=0.527  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+|++|+||||+++.|.+.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999875

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=97.32  E-value=0.00022  Score=74.06  Aligned_cols=67  Identities=22%  Similarity=0.352  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~  166 (330)
                      ++..++|+||||+|||||++.|...++             |..|+  .+|.+..-++.+.+.+.+   .++.++..++..
T Consensus       360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~  426 (588)
T PRK13657        360 PGQTVAIVGPTGAGKSTLINLLQRVFD-------------PQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIE  426 (588)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcC-------------CCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHH
Confidence            568999999999999999999987765             34444  478777766666655543   366677777777


Q ss_pred             Cc-ccc
Q psy933          167 DA-MYG  171 (330)
Q Consensus       167 g~-~YG  171 (330)
                      +| .||
T Consensus       427 ~Ni~~~  432 (588)
T PRK13657        427 DNIRVG  432 (588)
T ss_pred             HHHhcC
Confidence            76 355

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=97.31  E-value=0.0049  Score=54.72  Aligned_cols=54  Identities=22%  Similarity=0.367  Sum_probs=36.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCcccc--ccccccCCCC--cccCCeeEEEecccch
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYP--VPHTTRSPRS--DEENGRAYYFISHDEM  150 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~--v~~TTR~pr~--~E~~G~dy~fvs~~~f  150 (330)
                      .|+|+|.+|||||||.|.|+...  .|...  .+.+|+....  .+.+|....+||..-|
T Consensus         2 ~i~lvG~~g~GKSsl~N~ilg~~--~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~   59 (196)
T cd01852           2 RLVLVGKTGAGKSATGNTILGRE--VFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGL   59 (196)
T ss_pred             EEEEECCCCCCHHHHHHHhhCCC--ccccccCCCCcccccceeeEEECCeEEEEEECcCC
Confidence            58999999999999999998763  24332  2234554332  3557777777766544

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=97.31  E-value=0.00016  Score=76.59  Aligned_cols=78  Identities=19%  Similarity=0.292  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~  166 (330)
                      .+..|+|+||||+|||||++.|+..++             |..|+  .||.|..-++.+++.+.+   .++.++..++..
T Consensus       504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~  570 (710)
T TIGR03796       504 PGQRVALVGGSGSGKSTIAKLVAGLYQ-------------PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVR  570 (710)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHH
Confidence            568999999999999999999988765             44454  478776666666655544   367778777777


Q ss_pred             Ccc-ccc---cHHHHHHHHH
Q psy933          167 DAM-YGT---KLETIRRIHQ  182 (330)
Q Consensus       167 g~~-YGt---s~~~i~~v~~  182 (330)
                      +|. +|.   +.+.+.++++
T Consensus       571 eNi~l~~~~~~~~~i~~al~  590 (710)
T TIGR03796       571 DNLTLWDPTIPDADLVRACK  590 (710)
T ss_pred             HHhhCCCCCCCHHHHHHHHH
Confidence            774 553   3444444443

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=97.30  E-value=0.00011  Score=77.90  Aligned_cols=77  Identities=16%  Similarity=0.310  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      .+..|+|+|+||||||||++.|...+.             |-.|+  .||.|-.-++...+.+.   +.++.|+..|...
T Consensus       498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~-------------p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~  564 (709)
T COG2274         498 PGEKVAIVGRSGSGKSTLLKLLLGLYK-------------PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR  564 (709)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHH
Confidence            457899999999999999998887654             44554  49999888888888874   4689999999988


Q ss_pred             Ccc-ccccHHHHHHHH
Q psy933          167 DAM-YGTKLETIRRIH  181 (330)
Q Consensus       167 g~~-YGts~~~i~~v~  181 (330)
                      +|. .|-+..+.++++
T Consensus       565 eNi~l~~p~~~~e~i~  580 (709)
T COG2274         565 ENIALGNPEATDEEII  580 (709)
T ss_pred             HHHhcCCCCCCHHHHH
Confidence            874 444433333333

>PRK03003 GTP-binding protein Der; Reviewed

Probab=97.30  E-value=0.0032  Score=63.86  Aligned_cols=57  Identities=23%  Similarity=0.382  Sum_probs=43.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM  150 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f  150 (330)
                      ...|+|+|++|||||||+++|+.... .+....+.|||.+-..  +.+|..|.+++..-+
T Consensus       211 ~~kI~iiG~~nvGKSSLin~l~~~~~-~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~  269 (472)
T PRK03003        211 PRRVALVGKPNVGKSSLLNKLAGEER-SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGL  269 (472)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCccCCcceEEEEECCEEEEEEECCCc
Confidence            36799999999999999999997542 2456688899877543  457777888776654

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=97.29  E-value=0.0002  Score=75.88  Aligned_cols=77  Identities=22%  Similarity=0.390  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~  166 (330)
                      ++..|+|+||||+|||||++.|...++             |..|+  .||.+..-++...+.+.+   .++.++..++..
T Consensus       490 ~G~~iaIvG~sGsGKSTLlklL~gl~~-------------p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~  556 (694)
T TIGR03375       490 PGEKVAIIGRIGSGKSTLLKLLLGLYQ-------------PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR  556 (694)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHH
Confidence            568999999999999999999987765             34454  478776666666655433   466777777777


Q ss_pred             Ccc-ccc---cHHHHHHHH
Q psy933          167 DAM-YGT---KLETIRRIH  181 (330)
Q Consensus       167 g~~-YGt---s~~~i~~v~  181 (330)
                      +|. +|.   +.+.+.+++
T Consensus       557 eNi~~~~~~~~~~~i~~a~  575 (694)
T TIGR03375       557 DNIALGAPYADDEEILRAA  575 (694)
T ss_pred             HHHhCCCCCCCHHHHHHHH
Confidence            763 552   344444444

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.28  E-value=0.0041  Score=54.75  Aligned_cols=20  Identities=25%  Similarity=0.491  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHH
Q psy933           95 TLVLLGAHGVGRRHIKNTLI  114 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~  114 (330)
                      .|+|.|.+|+||||++++|.
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH
Confidence            58999999999999999998

>PRK13808 adenylate kinase; Provisional

Probab=97.28  E-value=0.0042  Score=60.29  Aligned_cols=23  Identities=30%  Similarity=0.676  Sum_probs=21.0

Q ss_pred             EEEEcCCCccHHHHHHHHHhhCC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      |+|+||+||||+|++.+|.+.+.
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~yg   25 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQYG   25 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            88899999999999999998763

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=97.28  E-value=0.00053  Score=61.70  Aligned_cols=29  Identities=24%  Similarity=0.277  Sum_probs=24.4

Q ss_pred             cccceEEEecC-CHHHHHHHHHHHHHHhcC
Q psy933          241 EHFFDLTVVNN-DIEETIGILEKAIEELHT  269 (330)
Q Consensus       241 ~~~fD~vI~N~-dle~a~~~L~~~i~~~~~  269 (330)
                      ....|++|.|+ ++++..+++..+++++..
T Consensus       168 ~~~ad~vI~N~g~~e~l~~~v~~~~~~~~~  197 (200)
T PRK14734        168 LKAADIVVDNNGTREQLLAQVDGLIAEILS  197 (200)
T ss_pred             HHhCCEEEECcCCHHHHHHHHHHHHHHHHh
Confidence            35688999998 999999999999887754

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.27  E-value=0.00025  Score=73.50  Aligned_cols=78  Identities=21%  Similarity=0.294  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      .+..++|+||||+|||||.+.|...++             |..|+  .+|++..-++.+.+.+.   +.+..++..++..
T Consensus       365 ~G~~~aivG~sGsGKSTL~~ll~g~~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~  431 (574)
T PRK11160        365 AGEKVALLGRTGCGKSTLLQLLTRAWD-------------PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLR  431 (574)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHH
Confidence            567999999999999999999987764             33444  37777666666555543   3456666666666


Q ss_pred             Ccc-ccc---cHHHHHHHHH
Q psy933          167 DAM-YGT---KLETIRRIHQ  182 (330)
Q Consensus       167 g~~-YGt---s~~~i~~v~~  182 (330)
                      +|. ||-   +.+.+.++++
T Consensus       432 ~Ni~~~~~~~~~~~i~~al~  451 (574)
T PRK11160        432 DNLLLAAPNASDEALIEVLQ  451 (574)
T ss_pred             HHhhcCCCccCHHHHHHHHH
Confidence            663 542   3334444443

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=97.27  E-value=0.00056  Score=62.41  Aligned_cols=27  Identities=15%  Similarity=0.327  Sum_probs=24.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDK  120 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~  120 (330)
                      ..|.|.|+|||||||++++|.+.++..
T Consensus         9 iiIgIaG~SgSGKTTva~~l~~~~~~~   35 (218)
T COG0572           9 IIIGIAGGSGSGKTTVAKELSEQLGVE   35 (218)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence            588999999999999999999998854

>cd01894 EngA1 EngA1 subfamily

Probab=97.27  E-value=0.0036  Score=52.10  Aligned_cols=51  Identities=24%  Similarity=0.354  Sum_probs=33.8

Q ss_pred             EEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEeccc
Q psy933           97 VLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHD  148 (330)
Q Consensus        97 vLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~  148 (330)
                      +|+|.+|||||||.++|..... .+....+.||+.....  +.+|..+.+++..
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dtp   53 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRD-AIVEDTPGVTRDRIYGEAEWGGREFILIDTG   53 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcE-EeecCCCCceeCceeEEEEECCeEEEEEECC
Confidence            5899999999999999987642 2444566677654433  2345555555544

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.27  E-value=0.00024  Score=73.72  Aligned_cols=78  Identities=19%  Similarity=0.324  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~  166 (330)
                      ++..|+|+|+||+|||||++.|...++             |..|+  .||.+..-++.+.+.+.+   .++.++..++..
T Consensus       366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~-------------p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~  432 (592)
T PRK10790        366 SRGFVALVGHTGSGKSTLASLLMGYYP-------------LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFL  432 (592)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccC-------------CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHH
Confidence            567999999999999999999987765             33444  488887777766666544   477777777777


Q ss_pred             Cc-cccc--cHHHHHHHHH
Q psy933          167 DA-MYGT--KLETIRRIHQ  182 (330)
Q Consensus       167 g~-~YGt--s~~~i~~v~~  182 (330)
                      +| .||-  +.+.+.++++
T Consensus       433 ~NI~~~~~~~d~~i~~a~~  451 (592)
T PRK10790        433 ANVTLGRDISEEQVWQALE  451 (592)
T ss_pred             HHHHhCCCCCHHHHHHHHH
Confidence            66 3443  3344444443

>PRK12288 GTPase RsgA; Reviewed

Probab=97.25  E-value=0.00011  Score=71.66  Aligned_cols=44  Identities=25%  Similarity=0.337  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCcccccc-------ccccCCCCccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP-------HTTRSPRSDEE  137 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~-------~TTR~pr~~E~  137 (330)
                      .++++|+|+||||||||+|.|+....- -...++       |||+....-..
T Consensus       205 ~ki~~~vG~sgVGKSTLiN~Ll~~~~~-~t~~is~~~~rGrHTT~~~~l~~l  255 (347)
T PRK12288        205 GRISIFVGQSGVGKSSLINALLPEAEI-LVGDVSDNSGLGQHTTTAARLYHF  255 (347)
T ss_pred             hCCEEEECCCCCCHHHHHHHhccccce-eeccccCcCCCCcCceeeEEEEEe
Confidence            468999999999999999999865432 233444       78887554433

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=97.25  E-value=0.00028  Score=72.25  Aligned_cols=64  Identities=22%  Similarity=0.329  Sum_probs=46.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhhHH---hccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMSDI---AANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~~i---~~~~fle~~~~~  166 (330)
                      ++..++|+||||+|||||.+.|...++             |..|++  +|.+..-++.+++.+.+   .+..++.-++..
T Consensus       347 ~G~~~~ivG~sGsGKSTL~~ll~g~~~-------------~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~  413 (529)
T TIGR02857       347 PGERVALVGPSGAGKSTLLNLLLGFVD-------------PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIA  413 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHH
Confidence            567999999999999999999987664             445554  77777666666555433   355666666666


Q ss_pred             Cc
Q psy933          167 DA  168 (330)
Q Consensus       167 g~  168 (330)
                      +|
T Consensus       414 ~N  415 (529)
T TIGR02857       414 EN  415 (529)
T ss_pred             HH
Confidence            66

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=97.25  E-value=0.0014  Score=67.29  Aligned_cols=84  Identities=19%  Similarity=0.287  Sum_probs=56.6

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY  170 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y  170 (330)
                      .+...|+++|++||||||++++++....                       |..|+.+.+..                 |
T Consensus       367 ~~p~LVil~G~pGSGKST~A~~l~~~~g-----------------------~~~vn~D~lg~-----------------~  406 (526)
T TIGR01663       367 APCEMVIAVGFPGAGKSHFCKKFFQPAG-----------------------YKHVNADTLGS-----------------T  406 (526)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHcC-----------------------CeEECcHHHHH-----------------H
Confidence            4567999999999999999999987531                       44555555421                 1


Q ss_pred             cccHHHHHHHHHhCCeEEEEeC---HHH----HHHHHhcCCCCEEEEEccC
Q psy933          171 GTKLETIRRIHQEGKIAILDVE---PQA----LKILRTGEFSPFVVFIAAP  214 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~---~~~----v~~L~~~~~~p~vIfI~pp  214 (330)
                      -.-...+++.+++|+.+|+|-.   ...    +...+..+....+||+..|
T Consensus       407 ~~~~~~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p  457 (526)
T TIGR01663       407 QNCLTACERALDQGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAP  457 (526)
T ss_pred             HHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence            1224567888999999999875   222    2223344555667777776

Note that the EC number for the kinase function is: 2.7.1.78

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=97.23  E-value=0.00025  Score=62.43  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHh
Q psy933           95 TLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~  115 (330)
                      .|+|+|++||||||+++.|.+
T Consensus         1 ii~itG~~gsGKst~~~~l~~   21 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE   21 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999987

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=97.23  E-value=0.0063  Score=62.37  Aligned_cols=27  Identities=15%  Similarity=0.443  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..|+|.|||||||||+++.|.+.+.
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~  309 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLG  309 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            456899999999999999999998763

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.23  E-value=0.0024  Score=55.73  Aligned_cols=27  Identities=22%  Similarity=0.471  Sum_probs=22.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDK  120 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~  120 (330)
                      --|.|.||+|||||||+.++++...+.
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~~~   32 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLREK   32 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence            468899999999999999998765543

>cd04163 Era Era subfamily

Probab=97.22  E-value=0.0098  Score=49.43  Aligned_cols=23  Identities=22%  Similarity=0.505  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ..|+|+|++|+|||||.++|...
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999864

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>KOG0057|consensus

Probab=97.22  E-value=0.00014  Score=73.67  Aligned_cols=84  Identities=20%  Similarity=0.284  Sum_probs=63.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHh---ccceeeEEeecCc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA---ANQYLEYGTHEDA  168 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~---~~~fle~~~~~g~  168 (330)
                      ++.-|+|+|++||||||+.+.|++.+.  +.+.|-          +||.|..-++.+.+.+.|.   ++.-|...+.--|
T Consensus       377 kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~----------IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~N  444 (591)
T KOG0057|consen  377 KGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSIL----------IDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYN  444 (591)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEE----------ECCeeHhhhChHHhhhheeEeCCcccccchhHHHH
Confidence            467899999999999999999998875  444432          6999999999999988764   6666666655445


Q ss_pred             -cccccHHHHHHHHHhCCeE
Q psy933          169 -MYGTKLETIRRIHQEGKIA  187 (330)
Q Consensus       169 -~YGts~~~i~~v~~~gk~~  187 (330)
                       .||.+..+-+++.+..|.+
T Consensus       445 I~YGn~sas~eeV~e~~k~a  464 (591)
T KOG0057|consen  445 IKYGNPSASDEEVVEACKRA  464 (591)
T ss_pred             hhcCCCCcCHHHHHHHHHHc
Confidence             7998777777776654443

>PRK02496 adk adenylate kinase; Provisional

Probab=97.22  E-value=0.0021  Score=56.44  Aligned_cols=24  Identities=25%  Similarity=0.480  Sum_probs=21.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|+||+||||||+++.|.+.+.
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~   26 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLH   26 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            388999999999999999998763

>cd04171 SelB SelB subfamily

Probab=97.21  E-value=0.005  Score=51.74  Aligned_cols=23  Identities=13%  Similarity=0.101  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+|++|||||||.++|....
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~   24 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIE   24 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcc
Confidence            58999999999999999998543

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=97.20  E-value=0.00034  Score=72.07  Aligned_cols=78  Identities=19%  Similarity=0.277  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhh---HHhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMS---DIAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~---~i~~~~fle~~~~~  166 (330)
                      .+..|+|+|+||+|||||++.|...++             |..|+  .+|+++.-++.+++.+   .+.++.++..++..
T Consensus       357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~-------------~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~  423 (571)
T TIGR02203       357 PGETVALVGRSGSGKSTLVNLIPRFYE-------------PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA  423 (571)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccC-------------CCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHH
Confidence            568999999999999999999987764             33443  3777766666666554   33477788888877


Q ss_pred             Cc-cccc----cHHHHHHHHH
Q psy933          167 DA-MYGT----KLETIRRIHQ  182 (330)
Q Consensus       167 g~-~YGt----s~~~i~~v~~  182 (330)
                      +| .||.    +.+.+.++++
T Consensus       424 ~Ni~~~~~~~~~~~~i~~~l~  444 (571)
T TIGR02203       424 NNIAYGRTEQADRAEIERALA  444 (571)
T ss_pred             HHHhcCCCCCCCHHHHHHHHH
Confidence            77 3553    3445555443

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd01855 YqeH YqeH

Probab=97.19  E-value=0.0004  Score=61.34  Aligned_cols=53  Identities=21%  Similarity=0.204  Sum_probs=38.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC-------CCccccccccccCCCCcccCCeeEEEec
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP-------DKYAYPVPHTTRSPRSDEENGRAYYFIS  146 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p-------~~f~~~v~~TTR~pr~~E~~G~dy~fvs  146 (330)
                      +..++|+|.+|||||||+|.|....-       ..-....|.|||.+.....+. .+.++|
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~D  186 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYD  186 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEe
Confidence            46799999999999999999987532       113456788999887665532 344544

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK00023 cmk cytidylate kinase; Provisional

Probab=97.17  E-value=0.0014  Score=60.09  Aligned_cols=25  Identities=20%  Similarity=0.399  Sum_probs=22.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..|+|.||+||||||+++.|++.+.
T Consensus         5 ~~i~i~g~~gsGksti~~~la~~~~   29 (225)
T PRK00023          5 IVIAIDGPAGSGKGTVAKILAKKLG   29 (225)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5899999999999999999998764

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.16  E-value=0.0065  Score=53.55  Aligned_cols=26  Identities=23%  Similarity=0.537  Sum_probs=22.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +..++|+||||+|||||++.|.....
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~   28 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFS   28 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999999987653

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=97.15  E-value=0.0004  Score=71.66  Aligned_cols=77  Identities=18%  Similarity=0.319  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      ++..++|+||||+|||||++.|+..++             |..|+  .||.+..-++...+.+.   +.++.++.-++..
T Consensus       365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~-------------p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~  431 (576)
T TIGR02204       365 PGETVALVGPSGAGKSTLFQLLLRFYD-------------PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVM  431 (576)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccC-------------CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHH
Confidence            568999999999999999999988765             33454  47776655555554443   2366677777776


Q ss_pred             Cc-cccc---cHHHHHHHH
Q psy933          167 DA-MYGT---KLETIRRIH  181 (330)
Q Consensus       167 g~-~YGt---s~~~i~~v~  181 (330)
                      +| .||.   +.+.+.+++
T Consensus       432 ~Ni~~~~~~~~~~~~~~~l  450 (576)
T TIGR02204       432 ENIRYGRPDATDEEVEAAA  450 (576)
T ss_pred             HHHhcCCCCCCHHHHHHHH
Confidence            66 3543   234444444

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG1159 Era GTPase [General function prediction only]

Probab=97.15  E-value=0.0051  Score=58.43  Aligned_cols=168  Identities=17%  Similarity=0.214  Sum_probs=89.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccC--CeeEEEecccchhhH-HhccceeeEEeecCcccc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEEN--GRAYYFISHDEMMSD-IAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~--G~dy~fvs~~~f~~~-i~~~~fle~~~~~g~~YG  171 (330)
                      .|+|+|.+.||||||.|.|+..-- -..+..|-|||..=.|-..  .....|||..-|... -.-|++            
T Consensus         8 fVaIiGrPNvGKSTLlN~l~G~Ki-sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~------------   74 (298)
T COG1159           8 FVAIIGRPNVGKSTLLNALVGQKI-SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGEL------------   74 (298)
T ss_pred             EEEEEcCCCCcHHHHHHHHhcCce-EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHH------------
Confidence            699999999999999999997643 3677788899977555332  223456666544321 111111            


Q ss_pred             ccHHHHHHHHHhCCeEEEEeCHHH---------HHHHHhcCCCCEEEEEc-cCccccccCchHHHHHHHHHHHHHHhhcc
Q psy933          172 TKLETIRRIHQEGKIAILDVEPQA---------LKILRTGEFSPFVVFIA-APQLQNLSDYDGSLEKLAKESDILKSAYE  241 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv~~~~---------v~~L~~~~~~p~vIfI~-pps~~~l~~~~e~~~rl~~~~~~ie~~~~  241 (330)
                       -..++.+.+..-..+++.++..-         +..|+. -..|.++-|. ..   .+. .+..+..+.+...     ..
T Consensus        75 -m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~-~~~pvil~iNKID---~~~-~~~~l~~~~~~~~-----~~  143 (298)
T COG1159          75 -MNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK-TKTPVILVVNKID---KVK-PKTVLLKLIAFLK-----KL  143 (298)
T ss_pred             -HHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhh-cCCCeEEEEEccc---cCC-cHHHHHHHHHHHH-----hh
Confidence             13444555555666666665432         556666 2235444332 21   111 1111222222211     12


Q ss_pred             ccceEEEecC-CHHHHHHHHHHHH-HHhcCCCccccccccccchhhh
Q psy933          242 HFFDLTVVNN-DIEETIGILEKAI-EELHTTPQWIPVSWLAKESDIL  286 (330)
Q Consensus       242 ~~fD~vI~N~-dle~a~~~L~~~i-~~~~~~~~WvP~sw~~~~~~~~  286 (330)
                      +-|..++.-+ ---..+..|.+.+ ..+...|.-.|...+-+.+++.
T Consensus       144 ~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf  190 (298)
T COG1159         144 LPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERF  190 (298)
T ss_pred             CCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHH
Confidence            3455554332 1112233344433 4556677788888887766654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=97.14  E-value=0.0073  Score=60.04  Aligned_cols=157  Identities=18%  Similarity=0.304  Sum_probs=81.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccchhhHHhccceeeEEeecCccccc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGT  172 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGt  172 (330)
                      .|+++|.+|+|||||+++|+.... .+....+.||+.+...  +.+|..|.+++..-+.+......-+|       .|..
T Consensus       174 ~v~ivG~~~~GKSsLin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e-------~~~~  245 (429)
T TIGR03594       174 KIAIIGRPNVGKSTLVNALLGEER-VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVE-------KYSV  245 (429)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCe-eecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHH-------HHHH
Confidence            589999999999999999987542 3456678888876433  34666777776554432111111111       1211


Q ss_pred             cHHHHHHHHHhCCeEEEEeCH------HHHHHHHh--cCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhhcc--c
Q psy933          173 KLETIRRIHQEGKIAILDVEP------QALKILRT--GEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYE--H  242 (330)
Q Consensus       173 s~~~i~~v~~~gk~~vldv~~------~~v~~L~~--~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~~~--~  242 (330)
                       ..+ ...+.....||+.+|.      +-.+.++.  ....|++|.+.--+   +.+..+..+.+.+...   ..+.  .
T Consensus       246 -~~~-~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~D---l~~~~~~~~~~~~~~~---~~~~~~~  317 (429)
T TIGR03594       246 -LRT-LKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWD---LVKDEKTREEFKKELR---RKLPFLD  317 (429)
T ss_pred             -HHH-HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcc---cCCCHHHHHHHHHHHH---HhcccCC
Confidence             111 2244556666666542      11222221  23467777765432   2122222333322222   1111  1


Q ss_pred             cceEE----EecCCHHHHHHHHHHHHHHh
Q psy933          243 FFDLT----VVNNDIEETIGILEKAIEEL  267 (330)
Q Consensus       243 ~fD~v----I~N~dle~a~~~L~~~i~~~  267 (330)
                      .+.++    ..+.++++.++.+..+.+..
T Consensus       318 ~~~vi~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       318 FAPIVFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            12222    23458999888888877654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=97.12  E-value=0.011  Score=51.69  Aligned_cols=157  Identities=19%  Similarity=0.279  Sum_probs=80.1

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcc
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAM  169 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~  169 (330)
                      |+--|+|+|+||-.+|||||+++|+..+...+             ...-|++|.|       +-.-.++=+.|..|..--
T Consensus         5 p~F~K~VailG~ESsGKStLv~kLA~~fnt~~-------------~wEY~Re~v~-------~~l~gdeal~y~Dy~~ia   64 (187)
T COG3172           5 PFFVKTVAILGGESSGKSTLVNKLANIFNTTS-------------AWEYGREYVF-------EHLGGDEALQYSDYAKIA   64 (187)
T ss_pred             hhhheeeeeecCcccChHHHHHHHHHHhCCCc-------------hhHHHHHHHH-------HHhCCchhhhhccHHHHH
Confidence            33447999999999999999999998764211             1222333322       111222123333332212


Q ss_pred             ccccHHHHHH-HHHhCCeEEEEeCHHHHHHHHhc--C-------------CCCEEEEEccCcc----ccccCchH--HHH
Q psy933          170 YGTKLETIRR-IHQEGKIAILDVEPQALKILRTG--E-------------FSPFVVFIAAPQL----QNLSDYDG--SLE  227 (330)
Q Consensus       170 YGts~~~i~~-v~~~gk~~vldv~~~~v~~L~~~--~-------------~~p~vIfI~pps~----~~l~~~~e--~~~  227 (330)
                      -|- .+.++. +-...+++++|.|+-+-+...+.  +             .+-.+|.+ +|+.    +-++....  +-+
T Consensus        65 ~Gq-~~~~d~av~~a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~~r~DL~lLl-~p~t~wvaDG~R~~~~~~~R~  142 (187)
T COG3172          65 LGQ-AAYEDAAVRYANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAEYRFDLTLLL-EPNTPWVADGLRSLGSSVQRQ  142 (187)
T ss_pred             hhh-HHHHHHHHhCCCceEEEeccHHHHHHHHHHHcccCCchHHHHHhhcccceEEEc-CCCCceeCCCccccccHhHHH
Confidence            222 122222 33457888888886543332221  1             12223444 4432    22332222  112


Q ss_pred             HHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHhcCC
Q psy933          228 KLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEELHTT  270 (330)
Q Consensus       228 rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~~~~  270 (330)
                      ...+..+++-..+  .--+|++.+ +..+=+.+..++++++-++
T Consensus       143 ~F~~~l~~~L~~~--~~~~v~i~~~~y~eR~~~~~~aV~ell~~  184 (187)
T COG3172         143 EFQNLLEQMLEEN--NIPFVVIEGEDYLERYLQAVEAVEELLGE  184 (187)
T ss_pred             HHHHHHHHHHHHh--CCcEEEEcCCCHHHHHHHHHHHHHHHHhc
Confidence            2223333332233  345666666 9999999999999887543

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=97.12  E-value=0.0066  Score=51.53  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=20.3

Q ss_pred             EEEEcCCCccHHHHHHHHHhhCC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      |+|+|++|||||||.++|...+.
T Consensus         2 i~~vG~~~~GKstLi~~l~~~~~   24 (167)
T cd04160           2 VLILGLDNAGKTTFLEQLKTLFS   24 (167)
T ss_pred             EEEEecCCCCHHHHHHHHhhhcc
Confidence            78999999999999999986543

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>KOG0056|consensus

Probab=97.12  E-value=0.00025  Score=71.31  Aligned_cols=84  Identities=19%  Similarity=0.235  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHH---hccceeeEEeecCc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDI---AANQYLEYGTHEDA  168 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~g~  168 (330)
                      .+++|+|+||||+|||||++.|.+.+. .-.++|          ++||.|..-|+.......|   .++.-+.-.+.--|
T Consensus       563 pGktvAlVG~SGaGKSTimRlLfRffd-v~sGsI----------~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yN  631 (790)
T KOG0056|consen  563 PGKTVALVGPSGAGKSTIMRLLFRFFD-VNSGSI----------TIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYN  631 (790)
T ss_pred             CCcEEEEECCCCCchhHHHHHHHHHhh-ccCceE----------EEcCchHHHHHHHHHHHhcCcccCcceeecceeeeh
Confidence            568999999999999999999998764 333333          5788888877777776644   35555544444444


Q ss_pred             -cccccHHHHHHHHHhCCe
Q psy933          169 -MYGTKLETIRRIHQEGKI  186 (330)
Q Consensus       169 -~YGts~~~i~~v~~~gk~  186 (330)
                       .||-+-++-+++.+..|.
T Consensus       632 Iryak~~AsneevyaAAkA  650 (790)
T KOG0056|consen  632 IRYAKPSASNEEVYAAAKA  650 (790)
T ss_pred             eeecCCCCChHHHHHHHHH
Confidence             687666665665554443

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.11  E-value=0.00093  Score=66.61  Aligned_cols=57  Identities=21%  Similarity=0.285  Sum_probs=45.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccchh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEMM  151 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f~  151 (330)
                      +.|+|+|-+.||||||.|||...- .-...-.|-|||.+..+  |..|..+..|+.--++
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r-~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~   62 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRR-IAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLD   62 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCe-eeEeecCCCCccCCccceeEEcCceEEEEECCCCC
Confidence            579999999999999999999763 24666789999998765  6688888877764443

>COG0218 Predicted GTPase [General function prediction only]

Probab=97.11  E-value=0.00058  Score=61.38  Aligned_cols=54  Identities=19%  Similarity=0.167  Sum_probs=36.8

Q ss_pred             ecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCC
Q psy933           86 VKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENG  139 (330)
Q Consensus        86 ~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G  139 (330)
                      ..+|+....=|+++|-|.||||||+|.|...-.--..+-.|-.||.+---++++
T Consensus        17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~   70 (200)
T COG0218          17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD   70 (200)
T ss_pred             hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC
Confidence            345666667899999999999999999987542223344556666554444443

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=97.11  E-value=0.0017  Score=56.97  Aligned_cols=25  Identities=28%  Similarity=0.611  Sum_probs=21.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++.+|++|-+||||||+.+.+.+..
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l   28 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKEL   28 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHH
Confidence            3789999999999999999887764

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=97.10  E-value=0.00064  Score=57.90  Aligned_cols=54  Identities=28%  Similarity=0.338  Sum_probs=37.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDE  149 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~  149 (330)
                      |.|+|+|++|||||||+++|......  ....+.||+.+..+.  .++..+.++|..-
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G   56 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPE--VAPYPFTTKSLFVGHFDYKYLRWQVIDTPG   56 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCc--cCCCCCcccceeEEEEccCceEEEEEECCC
Confidence            47899999999999999999876431  233566777665443  2445666666543

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG0055|consensus

Probab=97.10  E-value=0.00023  Score=78.21  Aligned_cols=77  Identities=19%  Similarity=0.255  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhh---HHhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMS---DIAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~---~i~~~~fle~~~~~  166 (330)
                      .++.++|+|||||||||++..|.+. .|            |-.|.  +||.|..-++..-.++   .+.+..-|.-++..
T Consensus      1015 ~GqTvALVG~SGsGKSTvI~LLeRf-Yd------------p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIr 1081 (1228)
T KOG0055|consen 1015 AGQTVALVGPSGSGKSTVISLLERF-YD------------PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIR 1081 (1228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh-cC------------CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHH
Confidence            5689999999999999999966544 33            33343  4787777666666555   34566777777888


Q ss_pred             Cc-cccccHHHHHHHH
Q psy933          167 DA-MYGTKLETIRRIH  181 (330)
Q Consensus       167 g~-~YGts~~~i~~v~  181 (330)
                      .| .||....+.++++
T Consensus      1082 ENI~YG~~~vs~~eIi 1097 (1228)
T KOG0055|consen 1082 ENIAYGSEEVSEEEII 1097 (1228)
T ss_pred             HHHhccCCCCCHHHHH
Confidence            88 7993222334444

>PRK07933 thymidylate kinase; Validated

Probab=97.10  E-value=0.013  Score=53.12  Aligned_cols=37  Identities=24%  Similarity=0.452  Sum_probs=27.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR  133 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr  133 (330)
                      .|+|-|+.||||||++++|.+.+... +..| ++|+.|.
T Consensus         2 ~IviEG~dGsGKST~~~~L~~~L~~~-g~~v-~~~~~P~   38 (213)
T PRK07933          2 LIAIEGVDGAGKRTLTEALRAALEAR-GRSV-ATLAFPR   38 (213)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHC-CCeE-EEEecCC
Confidence            69999999999999999999887532 2233 3455553

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.09  E-value=0.00053  Score=71.01  Aligned_cols=64  Identities=14%  Similarity=0.201  Sum_probs=42.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      ++..++|+||||+|||||.+.|...++             |..|++  +|.+..-++...+.+.   +.++.++..++..
T Consensus       340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~-------------p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~  406 (569)
T PRK10789        340 PGQMLGICGPTGSGKSTLLSLIQRHFD-------------VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVA  406 (569)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccC-------------CCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHH
Confidence            568999999999999999999987654             344543  6665544444444332   2355566566665


Q ss_pred             Cc
Q psy933          167 DA  168 (330)
Q Consensus       167 g~  168 (330)
                      +|
T Consensus       407 ~N  408 (569)
T PRK10789        407 NN  408 (569)
T ss_pred             HH
Confidence            55

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.08  E-value=0.0013  Score=53.54  Aligned_cols=22  Identities=23%  Similarity=0.531  Sum_probs=20.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhhC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      |+|.||+|+|||++++.|++..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999999875

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=97.08  E-value=0.0062  Score=58.58  Aligned_cols=55  Identities=25%  Similarity=0.362  Sum_probs=44.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM  150 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f  150 (330)
                      -.++|+|++.||||||+++|....++  ...-++||..|-+|  |-+|....+++..-+
T Consensus        64 a~v~lVGfPsvGKStLL~~LTnt~se--va~y~FTTl~~VPG~l~Y~ga~IQild~Pgi  120 (365)
T COG1163          64 ATVALVGFPSVGKSTLLNKLTNTKSE--VADYPFTTLEPVPGMLEYKGAQIQLLDLPGI  120 (365)
T ss_pred             eEEEEEcCCCccHHHHHHHHhCCCcc--ccccCceecccccceEeecCceEEEEcCccc
Confidence            37999999999999999999988775  45567899999888  557777777765543

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=97.07  E-value=0.0056  Score=61.86  Aligned_cols=54  Identities=20%  Similarity=0.294  Sum_probs=38.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEeccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHD  148 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~  148 (330)
                      -.|+|+|++|||||||.++|..... .+....+.|||..-..  ..+|..+.++|..
T Consensus       216 ~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~  271 (449)
T PRK05291        216 LKVVIAGRPNVGKSSLLNALLGEER-AIVTDIAGTTRDVIEEHINLDGIPLRLIDTA  271 (449)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCcccccEEEEEEECCeEEEEEeCC
Confidence            4799999999999999999987532 2456678888865433  3356555555544

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=97.07  E-value=0.021  Score=47.86  Aligned_cols=22  Identities=23%  Similarity=0.576  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+++|++|||||||.++|...
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~   23 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYD   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999999853

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PRK14526 adenylate kinase; Provisional

Probab=97.07  E-value=0.011  Score=53.67  Aligned_cols=23  Identities=39%  Similarity=0.651  Sum_probs=20.7

Q ss_pred             EEEEcCCCccHHHHHHHHHhhCC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      |+|+||+||||||+++.|.+.+.
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~   25 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELN   25 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999987754

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.06  E-value=0.00069  Score=62.24  Aligned_cols=26  Identities=19%  Similarity=0.287  Sum_probs=22.2

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ..+..|+|+||||||||||.+.|.-.
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            35689999999999999999977543

>PRK00093 GTP-binding protein Der; Reviewed

Probab=97.05  E-value=0.009  Score=59.61  Aligned_cols=56  Identities=21%  Similarity=0.394  Sum_probs=40.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM  150 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f  150 (330)
                      -.|+|+|.+|+|||||+++|+.... .+....+-|||.....  +.+|.+|.+++..-+
T Consensus       174 ~~v~ivG~~n~GKStlin~ll~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~  231 (435)
T PRK00093        174 IKIAIIGRPNVGKSSLINALLGEER-VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGI  231 (435)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCceEEEEEEEEEECCeeEEEEECCCC
Confidence            4799999999999999999987643 3456677788865432  246667777765443

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=97.04  E-value=0.0092  Score=59.86  Aligned_cols=51  Identities=22%  Similarity=0.298  Sum_probs=37.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--C-CeeEEEecc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--N-GRAYYFISH  147 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~-G~dy~fvs~  147 (330)
                      -|+|+|.++||||||+++|....|. . ..-|.||+.|-.+-+  + +..+.+++.
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~k-I-a~ypfTTl~PnlG~v~~~~~~~~~laD~  213 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPK-I-ANYHFTTLVPNLGVVETDDGRSFVMADI  213 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCc-c-ccCCcceeceEEEEEEEeCCceEEEEEC
Confidence            5899999999999999999987763 3 346789998866633  2 334444443

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.04  E-value=0.00047  Score=64.51  Aligned_cols=27  Identities=22%  Similarity=0.389  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||.|||||||.+.|....+
T Consensus        27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~   53 (258)
T COG1120          27 KGEITGILGPNGSGKSTLLKCLAGLLK   53 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            468999999999999999999987654

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=97.03  E-value=0.0015  Score=55.80  Aligned_cols=50  Identities=26%  Similarity=0.292  Sum_probs=34.2

Q ss_pred             EEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cC-CeeEEEecccc
Q psy933           98 LLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--EN-GRAYYFISHDE  149 (330)
Q Consensus        98 LvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~-G~dy~fvs~~~  149 (330)
                      |+|++|||||||.++|.....  .....+.||+.|..+.  .+ |..+.+++..-
T Consensus         1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG   53 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPG   53 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEeccc
Confidence            589999999999999987643  3345567887775542  33 55555555443

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=97.02  E-value=0.0034  Score=63.30  Aligned_cols=27  Identities=19%  Similarity=0.418  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..|+++|++|+||||++..|+....
T Consensus       254 ~p~vil~~G~~G~GKSt~a~~LA~~lg  280 (475)
T PRK12337        254 RPLHVLIGGVSGVGKSVLASALAYRLG  280 (475)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            357889999999999999999998764

>PRK13974 thymidylate kinase; Provisional

Probab=97.02  E-value=0.01  Score=53.60  Aligned_cols=27  Identities=30%  Similarity=0.452  Sum_probs=24.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      +..|+|.|+.||||||+++.|.+.++.
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~~   29 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLPS   29 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            468999999999999999999988764

>cd01863 Rab18 Rab18 subfamily

Probab=97.02  E-value=0.014  Score=49.22  Aligned_cols=22  Identities=23%  Similarity=0.578  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+++|++|||||||+++|...
T Consensus         2 ki~v~G~~~~GKSsli~~l~~~   23 (161)
T cd01863           2 KILLIGDSGVGKSSLLLRFTDD   23 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999854

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=97.01  E-value=0.0086  Score=58.09  Aligned_cols=41  Identities=20%  Similarity=0.252  Sum_probs=32.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE  137 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~  137 (330)
                      -|+|+|.++||||||.++|....|.  ....|.||+.|..+.+
T Consensus       159 dV~lvG~pnaGKSTLl~~lt~~~~~--va~y~fTT~~p~ig~v  199 (329)
T TIGR02729       159 DVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLVPNLGVV  199 (329)
T ss_pred             cEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCccCCEEEEE
Confidence            5899999999999999999876552  3445789998877643

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=97.01  E-value=0.0064  Score=62.14  Aligned_cols=53  Identities=17%  Similarity=0.198  Sum_probs=39.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDE  149 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~  149 (330)
                      -|+|+|.++||||||+++|....|.  ....|.||+.|-.+-+  .+..|.+++..-
T Consensus       161 dV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~lGvv~~~~~~f~laDtPG  215 (500)
T PRK12296        161 DVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPNLGVVQAGDTRFTVADVPG  215 (500)
T ss_pred             eEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccceEEEEEECCeEEEEEECCC
Confidence            5899999999999999999887663  2456889999877744  344455555443

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=96.99  E-value=0.022  Score=51.54  Aligned_cols=54  Identities=24%  Similarity=0.383  Sum_probs=33.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCcccc---ccccccC-CCCcccCCeeEEEecccch
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYP---VPHTTRS-PRSDEENGRAYYFISHDEM  150 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~---v~~TTR~-pr~~E~~G~dy~fvs~~~f  150 (330)
                      .|+|+|++|+|||++.|.|+...  .|...   -+.|+.. ...++.+|....+|+...|
T Consensus         2 ~IlllG~tGsGKSs~~N~ilg~~--~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl   59 (212)
T PF04548_consen    2 RILLLGKTGSGKSSLGNSILGKE--VFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGL   59 (212)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS---SS--TTTSS--SS-EEEEEEETTEEEEEEE--SS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc--ceeeccccCCcccccceeeeeecceEEEEEeCCCC
Confidence            48999999999999999998654  24333   1233222 1234678888888876654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.99  E-value=0.00075  Score=65.53  Aligned_cols=26  Identities=23%  Similarity=0.393  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..++|+||||||||||.+.++-..
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            46799999999999999999887554

>cd01858 NGP_1 NGP-1

Probab=96.99  E-value=0.00069  Score=58.06  Aligned_cols=39  Identities=28%  Similarity=0.326  Sum_probs=29.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSP  132 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~p  132 (330)
                      +..|+++|+||||||||.|.|..... .-...+|-|||..
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~-~~~~~~~g~T~~~  140 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKV-CKVAPIPGETKVW  140 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCc-eeeCCCCCeeEeE
Confidence            34678999999999999999986532 2455677777753

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.99  E-value=0.0006  Score=55.33  Aligned_cols=22  Identities=23%  Similarity=0.492  Sum_probs=20.5

Q ss_pred             EEEEcCCCccHHHHHHHHHhhC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      |+|.|++|||||||++.|.+..
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999885

...

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.98  E-value=0.0073  Score=57.57  Aligned_cols=176  Identities=15%  Similarity=0.182  Sum_probs=100.2

Q ss_pred             CceeeecccCC--CCCEEEEEcCCCccHHHHHHHHHhhCCCC-c-ccccccc-ccCCCCcccCCeeEEEecccchhhHH-
Q psy933           81 TYEEVVKLPSF--KRKTLVLLGAHGVGRRHIKNTLINKFPDK-Y-AYPVPHT-TRSPRSDEENGRAYYFISHDEMMSDI-  154 (330)
Q Consensus        81 ~Ye~V~~~~~~--~~r~ivLvGpsGvGKstL~~~L~~~~p~~-f-~~~v~~T-TR~pr~~E~~G~dy~fvs~~~f~~~i-  154 (330)
                      .++-+..+.|.  +...|.|.|++|+|||||...|..++-+. . ..++... |.|..-|-+=      =++--|.+.. 
T Consensus        37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL------GDRiRM~~~~~  110 (323)
T COG1703          37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL------GDRIRMQRLAV  110 (323)
T ss_pred             HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc------ccHhhHHhhcc
Confidence            34444444333  33478999999999999999999876431 1 1111111 1111122211      1455566655 


Q ss_pred             hccceeeEEeecCccccccHHHHHHHH---HhCCeEEEEeCHHHHHHH--HhcCCCCEEEEEccCccccccCchHHHHHH
Q psy933          155 AANQYLEYGTHEDAMYGTKLETIRRIH---QEGKIAILDVEPQALKIL--RTGEFSPFVVFIAAPQLQNLSDYDGSLEKL  229 (330)
Q Consensus       155 ~~~~fle~~~~~g~~YGts~~~i~~v~---~~gk~~vldv~~~~v~~L--~~~~~~p~vIfI~pps~~~l~~~~e~~~rl  229 (330)
                      ..|-|+-.---.|.+=|.|..+-+-+.   +.|...| .++.-|+-+-  --...--.++++..|..      -++++-+
T Consensus       111 ~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvI-IVETVGvGQsev~I~~~aDt~~~v~~pg~------GD~~Q~i  183 (323)
T COG1703         111 DPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVI-IVETVGVGQSEVDIANMADTFLVVMIPGA------GDDLQGI  183 (323)
T ss_pred             CCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEE-EEEecCCCcchhHHhhhcceEEEEecCCC------CcHHHHH
Confidence            678888887777888888876544322   3465544 3444343221  11233456677777743      1233322


Q ss_pred             HHHHHHHHhhccccceEEEecC----CHHHHHHHHHHHHHHh---cCCCccccc
Q psy933          230 AKESDILKSAYEHFFDLTVVNN----DIEETIGILEKAIEEL---HTTPQWIPV  276 (330)
Q Consensus       230 ~~~~~~ie~~~~~~fD~vI~N~----dle~a~~~L~~~i~~~---~~~~~WvP~  276 (330)
                      .  .-.|     ..-|.+++|.    +-+.|+..|..+++..   ..++-|-|-
T Consensus       184 K--~Gim-----EiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~pp  230 (323)
T COG1703         184 K--AGIM-----EIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPP  230 (323)
T ss_pred             H--hhhh-----hhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCc
Confidence            2  1222     3468888885    4556688888888777   567888873

>PRK15494 era GTPase Era; Provisional

Probab=96.97  E-value=0.015  Score=56.67  Aligned_cols=52  Identities=17%  Similarity=0.244  Sum_probs=33.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISH  147 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~  147 (330)
                      .|+|+|.+|||||||+++|+...- ....+-+.|||..-.+  ..+|....|+|.
T Consensus        54 kV~ivG~~nvGKSTLin~l~~~k~-~ivs~k~~tTr~~~~~~~~~~~~qi~~~DT  107 (339)
T PRK15494         54 SVCIIGRPNSGKSTLLNRIIGEKL-SIVTPKVQTTRSIITGIITLKDTQVILYDT  107 (339)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCce-eeccCCCCCccCcEEEEEEeCCeEEEEEEC
Confidence            789999999999999999986421 1123456788754333  223444444443

>PLN02318 phosphoribulokinase/uridine kinase

Probab=96.96  E-value=0.0022  Score=66.47  Aligned_cols=27  Identities=19%  Similarity=0.380  Sum_probs=23.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      +.+|.|.||||||||||++.|+...|.
T Consensus        65 riIIGIaGpSGSGKTTLAk~LaglLp~   91 (656)
T PLN02318         65 IILVGVAGPSGAGKTVFTEKVLNFMPS   91 (656)
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhhCCC
Confidence            458899999999999999999988763

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=96.96  E-value=0.0008  Score=71.28  Aligned_cols=64  Identities=13%  Similarity=0.227  Sum_probs=46.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~  166 (330)
                      .+..++|+||||+|||||++.|...++             |..|+  .||.+..-++.+.+.+.+   .++.++..++..
T Consensus       482 ~G~~vaivG~sGsGKSTL~~ll~g~~~-------------p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~  548 (694)
T TIGR01846       482 PGEFIGIVGPSGSGKSTLTKLLQRLYT-------------PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR  548 (694)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHH
Confidence            567999999999999999999987764             34454  488877777766665543   356666666666


Q ss_pred             Cc
Q psy933          167 DA  168 (330)
Q Consensus       167 g~  168 (330)
                      +|
T Consensus       549 eN  550 (694)
T TIGR01846       549 DN  550 (694)
T ss_pred             HH
Confidence            66

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=96.95  E-value=0.001  Score=56.99  Aligned_cols=43  Identities=33%  Similarity=0.394  Sum_probs=33.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE  136 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E  136 (330)
                      ...++|+|.+|+|||||.+.|....... ....++|||.+....
T Consensus       100 ~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~  142 (155)
T cd01849         100 SITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVK  142 (155)
T ss_pred             CcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEE
Confidence            4679999999999999999999765321 345689999875543

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK08118 topology modulation protein; Reviewed

Probab=96.93  E-value=0.00074  Score=59.02  Aligned_cols=24  Identities=25%  Similarity=0.569  Sum_probs=21.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      -|+|+||+|||||||+++|.+...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~   26 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLN   26 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999998753

>PLN03232 ABC transporter C family member; Provisional

Probab=96.92  E-value=0.00087  Score=76.85  Aligned_cols=78  Identities=10%  Similarity=0.069  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhhHH---hccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMSDI---AANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~~i---~~~~fle~~~~~  166 (330)
                      .+..|+|+||||+|||||++.|.+.++             |..|++  ||+|..-++.+.+.+.+   .++.++..|+..
T Consensus      1261 ~GekvaIVG~SGSGKSTL~~lL~rl~~-------------p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr 1327 (1495)
T PLN03232       1261 PSEKVGVVGRTGAGKSSMLNALFRIVE-------------LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVR 1327 (1495)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc-------------CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHH
Confidence            567999999999999999999987654             455654  99998888877776644   588899888888


Q ss_pred             Ccc-cc--ccHHHHHHHHH
Q psy933          167 DAM-YG--TKLETIRRIHQ  182 (330)
Q Consensus       167 g~~-YG--ts~~~i~~v~~  182 (330)
                      .|. +|  .+.+.|.++++
T Consensus      1328 ~NL~~~~~~sdeei~~al~ 1346 (1495)
T PLN03232       1328 FNIDPFSEHNDADLWEALE 1346 (1495)
T ss_pred             HHcCCCCCCCHHHHHHHHH
Confidence            774 43  24455555554

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.91  E-value=0.0043  Score=49.84  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=20.3

Q ss_pred             EEEEcCCCccHHHHHHHHHhhCC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      |+++|++|||||||+++|+....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~~   24 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGEF   24 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS-
T ss_pred             EEEECcCCCCHHHHHHHHhcCCC
Confidence            78999999999999999997653

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=96.91  E-value=0.0058  Score=62.42  Aligned_cols=23  Identities=22%  Similarity=0.468  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+|++|+||||+++.|.+..
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~l   24 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVL   24 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998765

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=96.90  E-value=0.0077  Score=53.37  Aligned_cols=154  Identities=18%  Similarity=0.282  Sum_probs=79.2

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccc-eeeEEeecCc
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQ-YLEYGTHEDA  168 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~-fle~~~~~g~  168 (330)
                      ..++.+|=|.|.||+|||||++.|.+..-.                  .|..-+.++-+.....+..+. |-+-... .|
T Consensus        20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~------------------~G~~~y~LDGDnvR~gL~~dLgFs~edR~-en   80 (197)
T COG0529          20 GQKGAVIWFTGLSGSGKSTIANALEEKLFA------------------KGYHVYLLDGDNVRHGLNRDLGFSREDRI-EN   80 (197)
T ss_pred             CCCCeEEEeecCCCCCHHHHHHHHHHHHHH------------------cCCeEEEecChhHhhcccCCCCCChHHHH-HH
Confidence            444568899999999999999999876532                  233334444444433322221 1100000 00


Q ss_pred             cccccHHHHHHHH-HhCCeEEE-EeCHHH-HH-HHHhcCC--CCEEEEEccCccccccCchHHHHHHHHHHHH--H----
Q psy933          169 MYGTKLETIRRIH-QEGKIAIL-DVEPQA-LK-ILRTGEF--SPFVVFIAAPQLQNLSDYDGSLEKLAKESDI--L----  236 (330)
Q Consensus       169 ~YGts~~~i~~v~-~~gk~~vl-dv~~~~-v~-~L~~~~~--~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~--i----  236 (330)
                      .  .....|-+.+ ++|-++|+ -++|-. .+ +.|..-.  .-+=|||..| +++....  +-+-|++.+..  |    
T Consensus        81 i--RRvaevAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~p-l~vce~R--DpKGLYkKAr~GeI~~fT  155 (197)
T COG0529          81 I--RRVAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTP-LEVCERR--DPKGLYKKARAGEIKNFT  155 (197)
T ss_pred             H--HHHHHHHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCC-HHHHHhc--CchHHHHHHHcCCCCCCc
Confidence            0  0112222323 45666654 566633 23 3333211  2456999987 2222111  11336654432  1    


Q ss_pred             --Hhhc--cccceEEEecC--CHHHHHHHHHHHHHHh
Q psy933          237 --KSAY--EHFFDLTVVNN--DIEETIGILEKAIEEL  267 (330)
Q Consensus       237 --e~~~--~~~fD~vI~N~--dle~a~~~L~~~i~~~  267 (330)
                        ...|  +...|.+|..+  ++++.+++|..++...
T Consensus       156 Gid~pYE~P~~Pel~l~t~~~~vee~v~~i~~~l~~~  192 (197)
T COG0529         156 GIDSPYEAPENPELHLDTDRNSVEECVEQILDLLKER  192 (197)
T ss_pred             CCCCCCCCCCCCeeEeccccCCHHHHHHHHHHHHHhc
Confidence              1223  34567777754  8999999998887643

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=96.89  E-value=0.0012  Score=57.52  Aligned_cols=29  Identities=28%  Similarity=0.501  Sum_probs=24.2

Q ss_pred             ccCCCCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           88 LPSFKRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        88 ~~~~~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      +|.....-|+|+|++|+|||||.++|...
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~   41 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNR   41 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            44455568999999999999999999865

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.88  E-value=0.00082  Score=61.29  Aligned_cols=26  Identities=23%  Similarity=0.404  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..++|+||||||||||.+.|....
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence            56799999999999999999886543

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.88  E-value=0.0011  Score=53.16  Aligned_cols=27  Identities=15%  Similarity=0.461  Sum_probs=23.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      ++.++|+||+|+||||+++.|+.....
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence            468999999999999999999987654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.88  E-value=0.0066  Score=53.70  Aligned_cols=28  Identities=29%  Similarity=0.604  Sum_probs=24.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      .+..++|+||+|+||||+++.|+...|.
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~   51 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIPP   51 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence            4578999999999999999999987663

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=96.88  E-value=0.0012  Score=57.88  Aligned_cols=32  Identities=25%  Similarity=0.469  Sum_probs=26.1

Q ss_pred             eecccCCCCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           85 VVKLPSFKRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        85 V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      +..+++...+-|+|+|++|||||||+++|...
T Consensus        16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~   47 (196)
T PRK00454         16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNR   47 (196)
T ss_pred             HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            44455556678999999999999999999864

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.88  E-value=0.0012  Score=58.99  Aligned_cols=24  Identities=21%  Similarity=0.497  Sum_probs=20.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~  115 (330)
                      .+..++|+||||+|||||.+.++-
T Consensus        24 ~ge~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          24 AGEIVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHh
Confidence            467999999999999999996653

>PRK09087 hypothetical protein; Validated

Probab=96.88  E-value=0.00078  Score=61.83  Aligned_cols=113  Identities=21%  Similarity=0.238  Sum_probs=59.3

Q ss_pred             ceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHH----hcc
Q psy933           82 YEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDI----AAN  157 (330)
Q Consensus        82 Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i----~~~  157 (330)
                      |.-+.+.+.-..++++|.||+|+|||+|++.+.+...-.                       +++...|...+    ..+
T Consensus        33 ~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~-----------------------~i~~~~~~~~~~~~~~~~   89 (226)
T PRK09087         33 VSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKSDAL-----------------------LIHPNEIGSDAANAAAEG   89 (226)
T ss_pred             HHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhcCCE-----------------------EecHHHcchHHHHhhhcC
Confidence            443444343335679999999999999999777543211                       22221111111    111


Q ss_pred             ceeeEEeecCc--cccccHHHHHHHHHhCCeEEEEeC--HHH----HHHHHhcCCCCEEEEEccCcccc
Q psy933          158 QYLEYGTHEDA--MYGTKLETIRRIHQEGKIAILDVE--PQA----LKILRTGEFSPFVVFIAAPQLQN  218 (330)
Q Consensus       158 ~fle~~~~~g~--~YGts~~~i~~v~~~gk~~vldv~--~~~----v~~L~~~~~~p~vIfI~pps~~~  218 (330)
                       .+-....+..  --..-..-+..+.+.|+..|+..+  |..    ...|+..--...++-|.||+.+.
T Consensus        90 -~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~  157 (226)
T PRK09087         90 -PVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDAL  157 (226)
T ss_pred             -eEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHH
Confidence             1111111000  001113344455567888777665  332    35577666678889999997543

>PLN02674 adenylate kinase

Probab=96.87  E-value=0.011  Score=55.14  Aligned_cols=25  Identities=24%  Similarity=0.522  Sum_probs=22.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..|+|+||+||||+|++.+|++.+.
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~~~   56 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDEYC   56 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999999998763

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=96.87  E-value=0.0011  Score=68.32  Aligned_cols=64  Identities=17%  Similarity=0.346  Sum_probs=41.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      ++..++|+||||+|||||.+.|...++             |..|+  .+|.+..-++.+.+.+.   +.++.++..++..
T Consensus       343 ~G~~~~ivG~sGsGKSTL~~ll~g~~~-------------~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~  409 (544)
T TIGR01842       343 AGEALAIIGPSGSGKSTLARLIVGIWP-------------PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVA  409 (544)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC-------------CCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHH
Confidence            568999999999999999999987764             33343  36666554444443332   2344555555555


Q ss_pred             Cc
Q psy933          167 DA  168 (330)
Q Consensus       167 g~  168 (330)
                      +|
T Consensus       410 ~N  411 (544)
T TIGR01842       410 EN  411 (544)
T ss_pred             HH
Confidence            55

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=96.87  E-value=0.00076  Score=64.07  Aligned_cols=41  Identities=32%  Similarity=0.420  Sum_probs=29.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccc-------cccccCCCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPV-------PHTTRSPRS  134 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v-------~~TTR~pr~  134 (330)
                      ++.++|+|+||||||||++.|+...... ...+       .|||+....
T Consensus       161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~-~g~v~~~~~~g~~tT~~~~~  208 (287)
T cd01854         161 GKTSVLVGQSGVGKSTLINALLPDLDLA-TGEISEKLGRGRHTTTHREL  208 (287)
T ss_pred             cceEEEECCCCCCHHHHHHHHhchhhcc-ccceeccCCCCCcccceEEE
Confidence            4789999999999999999998764322 2223       367876533

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=96.85  E-value=0.0069  Score=55.07  Aligned_cols=42  Identities=21%  Similarity=0.311  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD  135 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~  135 (330)
                      ++..|+|=|.-||||||+++.|.+.+.....  -..+||.|.-+
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~--~v~~trEP~~~   43 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI--KVVLTREPGGT   43 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEEeCCCCC
Confidence            3578999999999999999999988765322  34678988763

>PRK12289 GTPase RsgA; Reviewed

Probab=96.85  E-value=0.00097  Score=65.27  Aligned_cols=44  Identities=34%  Similarity=0.353  Sum_probs=32.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCcccccc-------ccccCCCCccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP-------HTTRSPRSDEE  137 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~-------~TTR~pr~~E~  137 (330)
                      .++++|+|+||||||||+|.|+.... .-...++       ||||....-+.
T Consensus       172 ~ki~v~iG~SgVGKSSLIN~L~~~~~-~~t~~vs~~~~rGrHTT~~~~l~~l  222 (352)
T PRK12289        172 NKITVVAGPSGVGKSSLINRLIPDVE-LRVGKVSGKLGRGRHTTRHVELFEL  222 (352)
T ss_pred             cceEEEEeCCCCCHHHHHHHHcCccc-cccccccCCCCCCCCcCceeEEEEC
Confidence            46799999999999999999986532 2234455       58987655444

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.85  E-value=0.0024  Score=51.84  Aligned_cols=27  Identities=26%  Similarity=0.516  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .++.++|+||+|+|||+|++.+.....
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            347899999999999999999998763

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=96.84  E-value=0.00085  Score=69.10  Aligned_cols=27  Identities=22%  Similarity=0.503  Sum_probs=24.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ++..++|+||||+|||||++.|...++
T Consensus       348 ~G~~~aivG~sGsGKSTL~~ll~g~~~  374 (547)
T PRK10522        348 RGELLFLIGGNGSGKSTLAMLLTGLYQ  374 (547)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            568999999999999999999987664

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=96.84  E-value=0.023  Score=55.31  Aligned_cols=40  Identities=20%  Similarity=0.281  Sum_probs=32.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE  136 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E  136 (330)
                      -|+|+|.++||||||+++|....|.  ....|.||+.|-.+-
T Consensus       160 dVglVG~PNaGKSTLln~ls~a~~~--va~ypfTT~~p~~G~  199 (335)
T PRK12299        160 DVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLHPNLGV  199 (335)
T ss_pred             CEEEEcCCCCCHHHHHHHHHcCCCc--cCCCCCceeCceEEE
Confidence            4899999999999999999876653  345678999987663

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=96.83  E-value=0.0011  Score=68.90  Aligned_cols=64  Identities=14%  Similarity=0.288  Sum_probs=40.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      .+..++|+||||+|||||.+.|...++             |..|+  .+|.+..-++.+.+.+.   +.++.++..++..
T Consensus       360 ~G~~~~ivG~sGsGKSTL~~ll~g~~~-------------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~  426 (585)
T TIGR01192       360 AGQTVAIVGPTGAGKTTLINLLQRVYD-------------PTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIR  426 (585)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHccCCC-------------CCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHH
Confidence            568999999999999999998887654             33443  36665554444443332   2244445445555


Q ss_pred             Cc
Q psy933          167 DA  168 (330)
Q Consensus       167 g~  168 (330)
                      +|
T Consensus       427 ~N  428 (585)
T TIGR01192       427 EN  428 (585)
T ss_pred             HH
Confidence            55

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>KOG0055|consensus

Probab=96.83  E-value=0.00057  Score=75.29  Aligned_cols=77  Identities=22%  Similarity=0.302  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhh---HHhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMS---DIAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~---~i~~~~fle~~~~~  166 (330)
                      .+..+.|+|||||||||+...|.+.+.             |..|++  ||.|-.-+.......   .+.+...+.-++..
T Consensus       378 ~G~~valVG~SGsGKST~i~LL~Rfyd-------------P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~  444 (1228)
T KOG0055|consen  378 SGQTVALVGPSGSGKSTLIQLLARFYD-------------PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIR  444 (1228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC-------------CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHH
Confidence            457999999999999999997766543             556664  787766655555444   23455566667777


Q ss_pred             Cc-cccc---cHHHHHHHH
Q psy933          167 DA-MYGT---KLETIRRIH  181 (330)
Q Consensus       167 g~-~YGt---s~~~i~~v~  181 (330)
                      .| .||.   +.+.|.++.
T Consensus       445 eNI~~G~~dat~~~i~~a~  463 (1228)
T KOG0055|consen  445 ENIRYGKPDATREEIEEAA  463 (1228)
T ss_pred             HHHhcCCCcccHHHHHHHH
Confidence            77 7997   445555544

>PLN03130 ABC transporter C family member; Provisional

Probab=96.82  E-value=0.0012  Score=76.23  Aligned_cols=79  Identities=13%  Similarity=0.089  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      .+..|+|+|+||+|||||++.|.+.++             |..|+  +||+|..-++...+.+.   +.++.++..|+..
T Consensus      1264 ~GekVaIVGrSGSGKSTLl~lL~rl~~-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIr 1330 (1622)
T PLN03130       1264 PSEKVGIVGRTGAGKSSMLNALFRIVE-------------LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330 (1622)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcCC-------------CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHH
Confidence            567999999999999999999987654             44555  49999888888777764   4588899899888


Q ss_pred             Ccc-cc--ccHHHHHHHHHh
Q psy933          167 DAM-YG--TKLETIRRIHQE  183 (330)
Q Consensus       167 g~~-YG--ts~~~i~~v~~~  183 (330)
                      .|. ||  .+.+.|.++++.
T Consensus      1331 eNLd~~~~~tdeei~~Al~~ 1350 (1622)
T PLN03130       1331 FNLDPFNEHNDADLWESLER 1350 (1622)
T ss_pred             HHhCcCCCCCHHHHHHHHHH
Confidence            774 44  344566666653

>smart00072 GuKc Guanylate kinase homologues

Probab=96.80  E-value=0.0011  Score=58.53  Aligned_cols=35  Identities=29%  Similarity=0.537  Sum_probs=30.4

Q ss_pred             chhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHh
Q psy933          282 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEEL  317 (330)
Q Consensus       282 ~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~  317 (330)
                      .+.+++..| |+||.+|+|+|+++||++|+++|+..
T Consensus       149 ~a~~~~~~~-~~fd~~I~n~~l~~~~~~l~~~i~~~  183 (184)
T smart00072      149 AAQKEAQEY-HLFDYVIVNDDLEDAYEELKEILEAE  183 (184)
T ss_pred             HHHHHHhhh-ccCCEEEECcCHHHHHHHHHHHHHhc
Confidence            466666677 99999999999999999999999764

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>COG1084 Predicted GTPase [General function prediction only]

Probab=96.79  E-value=0.013  Score=56.53  Aligned_cols=42  Identities=26%  Similarity=0.415  Sum_probs=33.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD  135 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~  135 (330)
                      .-++||++|+++||||||.+.|....|+  ..+=|.||+.---|
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpE--vA~YPFTTK~i~vG  208 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPE--VAPYPFTTKGIHVG  208 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCc--cCCCCccccceeEe
Confidence            3579999999999999999999998886  34456788765444

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=96.79  E-value=0.00073  Score=46.58  Aligned_cols=28  Identities=32%  Similarity=1.012  Sum_probs=24.3

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCC
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPS   29 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS   29 (330)
                      +|+|+++.|.+||.++..+. +..|+|||
T Consensus        21 ~i~v~~~~~~~Ww~~~~~~~-~~~G~vP~   48 (48)
T PF00018_consen   21 IIEVLEKSDDGWWKVRNEST-GKEGWVPS   48 (48)
T ss_dssp             EEEEEEESSSSEEEEEETTT-TEEEEEEG
T ss_pred             EEEEEEecCCCEEEEEECCC-CcEEEeeC
Confidence            47899999999999998643 88999996

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=96.79  E-value=0.018  Score=51.74  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      +.|+|+||+|||||+|.++|...
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~   23 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTG   23 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Confidence            35899999999999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG1489|consensus

Probab=96.78  E-value=0.019  Score=55.13  Aligned_cols=143  Identities=20%  Similarity=0.245  Sum_probs=80.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccccH
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKL  174 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts~  174 (330)
                      -|.|+|-+.+|||||.+.|...-|.  ...=+.||=.|.-|-        |..++|.+       +-.+..-|-.-|-+.
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpk--Va~YaFTTL~P~iG~--------v~yddf~q-------~tVADiPGiI~GAh~  260 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPK--VAHYAFTTLRPHIGT--------VNYDDFSQ-------ITVADIPGIIEGAHM  260 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCc--ccccceeeeccccce--------eeccccce-------eEeccCccccccccc
Confidence            4779999999999999999988873  233457888777662        33333322       111111111111110


Q ss_pred             HHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhhccccceEEEecC-CH
Q psy933          175 ETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNN-DI  253 (330)
Q Consensus       175 ~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~~~~~fD~vI~N~-dl  253 (330)
                             .+|         -|.+-||-.+-.-..+||---|-..++...+.++-|..+.+..+.....-.-.++.|- |+
T Consensus       261 -------nkG---------lG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~  324 (366)
T KOG1489|consen  261 -------NKG---------LGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDL  324 (366)
T ss_pred             -------cCc---------ccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCc
Confidence                   111         1233333322222233333222223344556777777777777766666777888887 88


Q ss_pred             HHHHHHH-HHHHHHhcCC
Q psy933          254 EETIGIL-EKAIEELHTT  270 (330)
Q Consensus       254 e~a~~~L-~~~i~~~~~~  270 (330)
                      .++-+.+ .++..++++.
T Consensus       325 ~eae~~~l~~L~~~lq~~  342 (366)
T KOG1489|consen  325 PEAEKNLLSSLAKRLQNP  342 (366)
T ss_pred             hhHHHHHHHHHHHHcCCC
Confidence            5666555 7777777654

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.78  E-value=0.0015  Score=61.09  Aligned_cols=146  Identities=20%  Similarity=0.330  Sum_probs=76.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhhHH-----hccceeeEEe
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMSDI-----AANQYLEYGT  164 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~~i-----~~~~fle~~~  164 (330)
                      .+-.+||+|||||||||+.+.+.+...             |..|++  +|.+..-.+.-++.+.|     +.|.|-... 
T Consensus        26 ~gef~vliGpSGsGKTTtLkMINrLie-------------pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~T-   91 (309)
T COG1125          26 EGEFLVLIGPSGSGKTTTLKMINRLIE-------------PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLT-   91 (309)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhcccC-------------CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCcc-
Confidence            457899999999999999886654432             445543  77766555555555532     244454333 


Q ss_pred             ecC------ccccccHHHHHHHHHhCCeEEEEeCHHH----------------HHHHHhcCCCCEEEEEccCccccccCc
Q psy933          165 HED------AMYGTKLETIRRIHQEGKIAILDVEPQA----------------LKILRTGEFSPFVVFIAAPQLQNLSDY  222 (330)
Q Consensus       165 ~~g------~~YGts~~~i~~v~~~gk~~vldv~~~~----------------v~~L~~~~~~p~vIfI~pps~~~l~~~  222 (330)
                      ...      ++-|-+++.+++-+.+ -.-++.++|.-                +-.+|..--.|-++...-|- ..|   
T Consensus        92 v~eNIa~VP~L~~w~k~~i~~r~~E-Ll~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPF-gAL---  166 (309)
T COG1125          92 VAENIATVPKLLGWDKERIKKRADE-LLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPF-GAL---  166 (309)
T ss_pred             HHHHHHhhhhhcCCCHHHHHHHHHH-HHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCc-ccc---
Confidence            222      2445566655544322 11244555531                11233333467777776551 111   


Q ss_pred             hHHH-HHHHHHHHHHHhhccccceEEEecCCHHHHHH
Q psy933          223 DGSL-EKLAKESDILKSAYEHFFDLTVVNNDIEETIG  258 (330)
Q Consensus       223 ~e~~-~rl~~~~~~ie~~~~~~fD~vI~N~dle~a~~  258 (330)
                      |--. .++.++...+.+..+  -..|.|..|+++|+.
T Consensus       167 DpI~R~~lQ~e~~~lq~~l~--kTivfVTHDidEA~k  201 (309)
T COG1125         167 DPITRKQLQEEIKELQKELG--KTIVFVTHDIDEALK  201 (309)
T ss_pred             ChhhHHHHHHHHHHHHHHhC--CEEEEEecCHHHHHh
Confidence            1000 123333333333322  355667778887764

>KOG0708|consensus

Probab=96.75  E-value=0.0014  Score=63.58  Aligned_cols=51  Identities=22%  Similarity=0.458  Sum_probs=48.3

Q ss_pred             cccccchhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHhcCCCceeecc
Q psy933          277 SWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS  327 (330)
Q Consensus       277 sw~~~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~~~~~qWvp~~  327 (330)
                      .-+++.++++|+.|+.||..+|..++++.+|.+++.+|++-|....|||++
T Consensus       309 ke~~e~a~klEqe~~~~~t~vv~~~s~e~i~~qvk~~I~~Eq~k~iWVp~~  359 (359)
T KOG0708|consen  309 KELLERARKLEQELDRYFTLVVQGGSLEELLSQVKDIIEDEQKKVIWVPAK  359 (359)
T ss_pred             HHHHHHHHHhHhhhhhceEEEEecccHHHHHHHHHHHHHHhhCCeEeeeCC
Confidence            356889999999999999999999999999999999999999999999974

>cd04155 Arl3 Arl3 subfamily

Probab=96.75  E-value=0.0068  Score=51.83  Aligned_cols=24  Identities=21%  Similarity=0.475  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ...|+|+||+|||||||.++|...
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcC
Confidence            356999999999999999999864

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>smart00175 RAB Rab subfamily of small GTPases

Probab=96.75  E-value=0.026  Score=47.43  Aligned_cols=21  Identities=24%  Similarity=0.661  Sum_probs=19.3

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+++|++|||||||+++|...
T Consensus         3 v~v~G~~~~GKTtli~~l~~~   23 (164)
T smart00175        3 IILIGDSGVGKSSLLSRFTDG   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999854

Rab GTPases are implicated in vesicle trafficking.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=96.74  E-value=0.0013  Score=67.86  Aligned_cols=28  Identities=11%  Similarity=0.375  Sum_probs=24.2

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..++|+||||+|||||.+.|...++
T Consensus       366 ~~G~~~aivG~sGsGKSTl~~ll~g~~~  393 (555)
T TIGR01194       366 AQGDIVFIVGENGCGKSTLAKLFCGLYI  393 (555)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3568999999999999999999987654

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=96.74  E-value=0.0012  Score=58.17  Aligned_cols=121  Identities=17%  Similarity=0.200  Sum_probs=68.8

Q ss_pred             cccccHHHHHHHHHhCCeEEE--------EeCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhhc
Q psy933          169 MYGTKLETIRRIHQEGKIAIL--------DVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAY  240 (330)
Q Consensus       169 ~YGts~~~i~~v~~~gk~~vl--------dv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~~  240 (330)
                      +|=.+.+...+.+++|..+-.        -+...++..+-..+.. .++-+.|...                 ..+... 
T Consensus        51 y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt~~~~i~~~~~~gk~-~il~~~~~g~-----------------~~L~~~-  111 (183)
T PF00625_consen   51 YHFVSKEEFERMIKAGEFIEYGEYDGNYYGTSKSAIDKVLEEGKH-CILDVDPEGV-----------------KQLKKA-  111 (183)
T ss_dssp             EEE--HHHHHHHHHTTHEEEEEEETTEEEEEEHHHHHHHHHTTTE-EEEEETHHHH-----------------HHHHHC-
T ss_pred             eEEEeechhhhhhccccEEEEeeecchhhhhccchhhHhhhcCCc-EEEEccHHHH-----------------HHHHhc-
Confidence            566788888888877765432        2344556665554443 2222332211                 122111 


Q ss_pred             cccceEEEe-cCCHHHHHHHHHHHHHHhcCCCccccccccccchhhhhhhccce--eeEEEEcCCHHHHHHHHHHHHHH
Q psy933          241 EHFFDLTVV-NNDIEETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHF--FDLTVVNNDIEETIGILEKAIEE  316 (330)
Q Consensus       241 ~~~fD~vI~-N~dle~a~~~L~~~i~~~~~~~~WvP~sw~~~~~~~~e~~y~h~--fd~~ivn~~~~~~~~~l~~~~~~  316 (330)
                      ....-.|.+ -.+.+..-+.|    .+...+    ...-+.+....++..|+|+  ||.||+|+||+.|+.+|+++|++
T Consensus       112 ~~~~~~IfI~~~s~~~l~~~l----~~r~~~----~~~~i~~r~~~~~~~~~~~~~fd~vi~n~~le~~~~~l~~ii~~  182 (183)
T PF00625_consen  112 GFNPIVIFIKPPSPEVLKRRL----RRRGDE----SEEEIEERLERAEKEFEHYNEFDYVIVNDDLEEAVKELKEIIEQ  182 (183)
T ss_dssp             TTTEEEEEEEESSHHHHHHHH----HTTTHC----HHHHHHHHHHHHHHHHGGGGGSSEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccCceEEEEEccchHHHHHHH----hccccc----cHHHHHHHHHHHHHHHhHhhcCCEEEECcCHHHHHHHHHHHHHh
Confidence            222223332 23444433332    221111    1124567788889999999  99999999999999999999975

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.73  E-value=0.0018  Score=59.85  Aligned_cols=50  Identities=20%  Similarity=0.400  Sum_probs=38.9

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhh
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMS  152 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~  152 (330)
                      ..++..++|+||||+|||||.+.+.-..+             |..||+  +|.++.-+|.++..+
T Consensus        31 V~~Gei~~iiGgSGsGKStlLr~I~Gll~-------------P~~GeI~i~G~~i~~ls~~~~~~   82 (263)
T COG1127          31 VPRGEILAILGGSGSGKSTLLRLILGLLR-------------PDKGEILIDGEDIPQLSEEELYE   82 (263)
T ss_pred             ecCCcEEEEECCCCcCHHHHHHHHhccCC-------------CCCCeEEEcCcchhccCHHHHHH
Confidence            34678999999999999999998876543             666754  888888888766443

>cd01893 Miro1 Miro1 subfamily

Probab=96.72  E-value=0.079  Score=45.19  Aligned_cols=22  Identities=32%  Similarity=0.721  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||+|.++|...
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~   23 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSE   23 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999864

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.70  E-value=0.011  Score=55.38  Aligned_cols=163  Identities=16%  Similarity=0.240  Sum_probs=84.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCC-cc-cccccc-ccCCCCcccCCeeEEEecccchhhHH-hccceeeEEeecCc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDK-YA-YPVPHT-TRSPRSDEENGRAYYFISHDEMMSDI-AANQYLEYGTHEDA  168 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~-f~-~~v~~T-TR~pr~~E~~G~dy~fvs~~~f~~~i-~~~~fle~~~~~g~  168 (330)
                      ...|.|.||+|+|||||...|...+... .. .++... |.|-.-|-+=|      ++--|.+.. +.+-|+-.---.|+
T Consensus        29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG------DRiRM~~~~~d~~vfIRS~atRG~  102 (266)
T PF03308_consen   29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG------DRIRMQELSRDPGVFIRSMATRGS  102 (266)
T ss_dssp             SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--------GGGCHHHHTSTTEEEEEE---SS
T ss_pred             ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc------cHHHhcCcCCCCCEEEeecCcCCC
Confidence            3589999999999999999998876421 11 111111 11111111111      555666653 57889988888888


Q ss_pred             cccccHHHHHH--HH-HhCCeEEEEeCH-HHHHHHHhcCCCCEEEEEccCcc-ccccCchHHHHHHHHHHHHHHhhcccc
Q psy933          169 MYGTKLETIRR--IH-QEGKIAILDVEP-QALKILRTGEFSPFVVFIAAPQL-QNLSDYDGSLEKLAKESDILKSAYEHF  243 (330)
Q Consensus       169 ~YGts~~~i~~--v~-~~gk~~vldv~~-~~v~~L~~~~~~p~vIfI~pps~-~~l~~~~e~~~rl~~~~~~ie~~~~~~  243 (330)
                      +=|.+...-+.  ++ +.|...|+.=+. -|-..+--...--.++++.+|.. ++++-..         +-.|     ..
T Consensus       103 lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~K---------aGim-----Ei  168 (266)
T PF03308_consen  103 LGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQAIK---------AGIM-----EI  168 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCTB----------TTHH-----HH
T ss_pred             CCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHHHh---------hhhh-----hh
Confidence            87876544332  23 356665543221 12222333455666777777743 3443211         1112     23


Q ss_pred             ceEEEecC-C---HHHHHHHHHHHHHHhcC-CCcccc
Q psy933          244 FDLTVVNN-D---IEETIGILEKAIEELHT-TPQWIP  275 (330)
Q Consensus       244 fD~vI~N~-d---le~a~~~L~~~i~~~~~-~~~WvP  275 (330)
                      .|.+++|- |   -+.++.+|...+..... ...|-|
T Consensus       169 aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~p  205 (266)
T PF03308_consen  169 ADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRP  205 (266)
T ss_dssp             -SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--
T ss_pred             ccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCC
Confidence            68888886 4   45567777777776544 566876

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=96.69  E-value=0.0021  Score=53.46  Aligned_cols=36  Identities=25%  Similarity=0.393  Sum_probs=25.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS  131 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~  131 (330)
                      .|+|+|++|+|||||.++|..... .+....+-||+.
T Consensus         3 ~i~l~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~   38 (157)
T cd04164           3 KVVIVGKPNVGKSSLLNALAGRDR-AIVSDIAGTTRD   38 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCce-EeccCCCCCccc
Confidence            589999999999999999986531 233334455544

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=96.69  E-value=0.0019  Score=74.26  Aligned_cols=79  Identities=14%  Similarity=0.154  Sum_probs=59.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~  166 (330)
                      .+..|+|+|+||+|||||++.|.+.++             |..|+  +||+|..-++.+.+.+.+   .++.++..|+..
T Consensus      1311 ~GekiaIVGrTGsGKSTL~~lL~rl~~-------------~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr 1377 (1522)
T TIGR00957      1311 GGEKVGIVGRTGAGKSSLTLGLFRINE-------------SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLR 1377 (1522)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcc-------------CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHH
Confidence            567999999999999999999987654             34554  499999888888877644   588899888888


Q ss_pred             Ccc--cc-ccHHHHHHHHHh
Q psy933          167 DAM--YG-TKLETIRRIHQE  183 (330)
Q Consensus       167 g~~--YG-ts~~~i~~v~~~  183 (330)
                      .|.  || .+.+.|.++++.
T Consensus      1378 ~NLdp~~~~sdeei~~al~~ 1397 (1522)
T TIGR00957      1378 MNLDPFSQYSDEEVWWALEL 1397 (1522)
T ss_pred             HHcCcccCCCHHHHHHHHHH
Confidence            885  44 345556655543

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.69  E-value=0.024  Score=55.09  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=22.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ...|.|+||+|+|||||.+.|+..+.
T Consensus        56 ~~~igi~G~~GaGKSTl~~~l~~~l~   81 (332)
T PRK09435         56 ALRIGITGVPGVGKSTFIEALGMHLI   81 (332)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45899999999999999999887754

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=96.67  E-value=0.013  Score=62.50  Aligned_cols=57  Identities=25%  Similarity=0.433  Sum_probs=43.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM  150 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f  150 (330)
                      .+.|+|+|.+|||||||+++|+.... .+....+.|||.+-..  +.+|..|.+++..-+
T Consensus       450 ~~kI~ivG~~nvGKSSLin~l~~~~~-~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~  508 (712)
T PRK09518        450 LRRVALVGRPNVGKSSLLNQLTHEER-AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGI  508 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCccc-cccCCCCCCCcCcceeEEEECCCEEEEEECCCc
Confidence            36799999999999999999987643 2455678899987544  457777777766543

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.64  E-value=0.0025  Score=58.80  Aligned_cols=26  Identities=15%  Similarity=0.423  Sum_probs=22.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+-.|+|+||||+|||||.+.|....
T Consensus        29 ~GE~VaiIG~SGaGKSTLLR~lngl~   54 (258)
T COG3638          29 QGEMVAIIGPSGAGKSTLLRSLNGLV   54 (258)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhccc
Confidence            45799999999999999999887643

>cd00881 GTP_translation_factor GTP translation factor family

Probab=96.64  E-value=0.066  Score=45.92  Aligned_cols=23  Identities=13%  Similarity=0.209  Sum_probs=20.8

Q ss_pred             EEEEcCCCccHHHHHHHHHhhCC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      |+|+|.+|+|||||.+.|.....
T Consensus         2 v~v~G~~~~GKStlln~l~~~~~   24 (189)
T cd00881           2 VGIAGHVDHGKTTLTERLLYVTG   24 (189)
T ss_pred             EEEEeCCCCCHHHHHHHHHHhcC
Confidence            78999999999999999987754

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd00880 Era_like Era (E

Probab=96.64  E-value=0.0083  Score=49.05  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=18.3

Q ss_pred             EEcCCCccHHHHHHHHHhhCC
Q psy933           98 LLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        98 LvGpsGvGKstL~~~L~~~~p  118 (330)
                      |+|++|+|||||++.|.....
T Consensus         1 i~G~~gsGKstl~~~l~~~~~   21 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEV   21 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccc
Confidence            589999999999999987643

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.63  E-value=0.0016  Score=53.00  Aligned_cols=23  Identities=22%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHH
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLI  114 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~  114 (330)
                      .+..++|+||||+|||||++.|.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            35789999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK00093 GTP-binding protein Der; Reviewed

Probab=96.62  E-value=0.0058  Score=61.01  Aligned_cols=56  Identities=23%  Similarity=0.326  Sum_probs=39.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM  150 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f  150 (330)
                      +.|+|+|.+|||||||.++|..... .+....+.+||....+  +.+|..+.+++..-+
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~-~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~   59 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRD-AIVADTPGVTRDRIYGEAEWLGREFILIDTGGI   59 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCCCcccceEEEEEECCcEEEEEECCCC
Confidence            3689999999999999999986542 2445566778766544  446666777765443

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=96.62  E-value=0.0019  Score=54.05  Aligned_cols=20  Identities=30%  Similarity=0.576  Sum_probs=18.7

Q ss_pred             EEEEcCCCccHHHHHHHHHh
Q psy933           96 LVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~  115 (330)
                      |+|+|++|+|||||.+.|..
T Consensus         2 i~l~G~~g~GKTtL~~~l~~   21 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTN   21 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhc
Confidence            78999999999999999983

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.60  E-value=0.0015  Score=58.05  Aligned_cols=25  Identities=16%  Similarity=0.375  Sum_probs=22.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      +|.|.||||||||||+++|...+..
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~   25 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNK   25 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCc
Confidence            5889999999999999999988763

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.59  E-value=0.0049  Score=57.51  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=21.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ...++|.||+|+|||++++.+.+..
T Consensus        42 ~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        42 VLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHH
Confidence            3579999999999999999988764

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK06547 hypothetical protein; Provisional

Probab=96.58  E-value=0.0017  Score=57.19  Aligned_cols=28  Identities=18%  Similarity=0.266  Sum_probs=23.2

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ......|+|.||+|||||||++.|.+..
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3344678888999999999999998874

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.58  E-value=0.002  Score=58.71  Aligned_cols=27  Identities=26%  Similarity=0.348  Sum_probs=22.6

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..+++.+|+|||||||||+.+.|-+.+
T Consensus        31 ~~~~VTAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          31 PKNKVTALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             cCCceEEEECCCCcCHHHHHHHHHhhc
Confidence            346799999999999999998776554

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.56  E-value=0.0021  Score=53.66  Aligned_cols=24  Identities=21%  Similarity=0.480  Sum_probs=21.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +|+|+||+|+|||+|++.|++...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~   24 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLG   24 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhh
Confidence            689999999999999999998764

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.55  E-value=0.002  Score=55.98  Aligned_cols=101  Identities=17%  Similarity=0.325  Sum_probs=52.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccc-eeeEEeecCcccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQ-YLEYGTHEDAMYG  171 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~-fle~~~~~g~~YG  171 (330)
                      +-.|.|+|.||+|||||++.|.+..-                  ..|...++++-+.+...+..+. |=... ...|.. 
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~~L~------------------~~g~~~~~LDgD~lR~~l~~dl~fs~~d-R~e~~r-   61 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALERRLF------------------ARGIKVYLLDGDNLRHGLNADLGFSKED-REENIR-   61 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHH------------------HTTS-EEEEEHHHHCTTTTTT--SSHHH-HHHHHH-
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH------------------HcCCcEEEecCcchhhccCCCCCCCHHH-HHHHHH-
Confidence            34789999999999999999987753                  1244456666666554433321 10000 001110 


Q ss_pred             ccHHHH-HHHHHhCCeEEEEeC-H--HHHHHHHhcCC--CCEEEEEccC
Q psy933          172 TKLETI-RRIHQEGKIAILDVE-P--QALKILRTGEF--SPFVVFIAAP  214 (330)
Q Consensus       172 ts~~~i-~~v~~~gk~~vldv~-~--~~v~~L~~~~~--~p~vIfI~pp  214 (330)
                       ....+ .-..++|-+||+..- |  +....+|+...  .-+-|||++|
T Consensus        62 -r~~~~A~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~  109 (156)
T PF01583_consen   62 -RIAEVAKLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCP  109 (156)
T ss_dssp             -HHHHHHHHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-
T ss_pred             -HHHHHHHHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCC
Confidence             11122 223467888887543 3  32333443322  3467999986

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PTZ00301 uridine kinase; Provisional

Probab=96.54  E-value=0.002  Score=58.52  Aligned_cols=24  Identities=17%  Similarity=0.522  Sum_probs=20.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+|.|.||||||||||++.|.+..
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l   27 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSEL   27 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHH
Confidence            589999999999999999887553

>PTZ00243 ABC transporter; Provisional

Probab=96.53  E-value=0.0026  Score=73.29  Aligned_cols=79  Identities=16%  Similarity=0.178  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~  166 (330)
                      .+..|+|+|+||+|||||++.|+..++             |..|+  +||+|..-++..++.+.+   .++.+|..|+..
T Consensus      1335 ~GekVaIVGrTGSGKSTLl~lLlrl~~-------------p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243       1335 PREKVGIVGRTGSGKSTLLLTFMRMVE-------------VCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401 (1560)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC-------------CCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHH
Confidence            567899999999999999999987664             44554  499998888877777644   478888888777


Q ss_pred             Ccc-c--cccHHHHHHHHHh
Q psy933          167 DAM-Y--GTKLETIRRIHQE  183 (330)
Q Consensus       167 g~~-Y--Gts~~~i~~v~~~  183 (330)
                      .|. +  ..+.+.|.++++.
T Consensus      1402 eNIdp~~~~sdeeI~~Al~~ 1421 (1560)
T PTZ00243       1402 QNVDPFLEASSAEVWAALEL 1421 (1560)
T ss_pred             HHhCcccCCCHHHHHHHHHH
Confidence            763 2  1344556666554

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=96.53  E-value=0.016  Score=50.74  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ..-|+|+|++|||||||.++|...
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~   40 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKND   40 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999999999999854

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.52  E-value=0.0043  Score=54.87  Aligned_cols=27  Identities=15%  Similarity=0.386  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            457999999999999999998886543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd00879 Sar1 Sar1 subfamily

Probab=96.50  E-value=0.0048  Score=53.89  Aligned_cols=24  Identities=17%  Similarity=0.391  Sum_probs=21.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .-|+|+||+|||||||+++|....
T Consensus        20 ~ki~ilG~~~~GKStLi~~l~~~~   43 (190)
T cd00879          20 AKILFLGLDNAGKTTLLHMLKDDR   43 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            467999999999999999998643

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG3079|consensus

Probab=96.50  E-value=0.02  Score=50.93  Aligned_cols=27  Identities=22%  Similarity=0.485  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +.++|.++|++||||.|+..++++.|+
T Consensus         7 ~~~IifVlGGPGsgKgTqC~kiv~ky~   33 (195)
T KOG3079|consen    7 KPPIIFVLGGPGSGKGTQCEKIVEKYG   33 (195)
T ss_pred             CCCEEEEEcCCCCCcchHHHHHHHHcC
Confidence            446888899999999999999999875

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=96.50  E-value=0.016  Score=57.69  Aligned_cols=53  Identities=25%  Similarity=0.387  Sum_probs=40.1

Q ss_pred             EEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccc
Q psy933           96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDE  149 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~  149 (330)
                      |+|+|.+|||||||.++|..... .+....+.+||....+  +.+|..+.++|..-
T Consensus         2 i~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG   56 (429)
T TIGR03594         2 VAIVGRPNVGKSTLFNRLTGKRD-AIVSDTPGVTRDRKYGDAEWGGREFILIDTGG   56 (429)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCc-ceecCCCCcccCceEEEEEECCeEEEEEECCC
Confidence            78999999999999999987642 3555677888876555  34677777776544

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.50  E-value=0.017  Score=51.66  Aligned_cols=25  Identities=16%  Similarity=0.387  Sum_probs=22.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      .|+|+||+|+||||+++.|+...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~   27 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINK   27 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh
Confidence            6899999999999999998887653

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK04213 GTP-binding protein; Provisional

Probab=96.49  E-value=0.004  Score=55.06  Aligned_cols=24  Identities=25%  Similarity=0.538  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ...|+|+|++|||||||.++|...
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~~   32 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTGK   32 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            357999999999999999999754

>cd04114 Rab30 Rab30 subfamily

Probab=96.49  E-value=0.055  Score=45.86  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=20.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~  115 (330)
                      ..|+++|++|||||||.++|..
T Consensus         8 ~~v~v~G~~~~GKSsli~~l~~   29 (169)
T cd04114           8 FKIVLIGNAGVGKTCLVRRFTQ   29 (169)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999984

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=96.47  E-value=0.011  Score=50.80  Aligned_cols=141  Identities=14%  Similarity=0.195  Sum_probs=75.1

Q ss_pred             EcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccccHHHHH
Q psy933           99 LGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR  178 (330)
Q Consensus        99 vGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts~~~i~  178 (330)
                      +|.+||||||+...|++...-.|               ++|-++|  +++..++| .+|.-|.-....+. ...-.+...
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~f---------------idGDdlH--p~aNi~KM-~~GiPL~DdDR~pW-L~~l~~~~~   61 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKF---------------IDGDDLH--PPANIEKM-SAGIPLNDDDRWPW-LEALGDAAA   61 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCce---------------ecccccC--CHHHHHHH-hCCCCCCcchhhHH-HHHHHHHHH
Confidence            48999999999999999875333               3443433  23333333 33433322111111 112233444


Q ss_pred             HHHHhCCeEEEEeCH--HH-HHHHHhcCCCCEEEEEccCccccccCchHHHHHHHH-------------HHHHHHhhccc
Q psy933          179 RIHQEGKIAILDVEP--QA-LKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAK-------------ESDILKSAYEH  242 (330)
Q Consensus       179 ~v~~~gk~~vldv~~--~~-v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~-------------~~~~ie~~~~~  242 (330)
                      ...+.|++.|+.++.  .. -..||.......+||+..+ .+.+      ++||..             +.+.+|.--..
T Consensus        62 ~~~~~~~~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~-~~~i------~~Rm~~R~gHFM~~~ll~SQfa~LE~P~~d  134 (161)
T COG3265          62 SLAQKNKHVVIACSALKRSYRDLLREANPGLRFVYLDGD-FDLI------LERMKARKGHFMPASLLDSQFATLEEPGAD  134 (161)
T ss_pred             HhhcCCCceEEecHHHHHHHHHHHhccCCCeEEEEecCC-HHHH------HHHHHhcccCCCCHHHHHHHHHHhcCCCCC
Confidence            445678888877763  22 2346666667778888864 3222      233332             22233321122


Q ss_pred             cceEE-EecC-CHHHHHHHHHHHHHH
Q psy933          243 FFDLT-VVNN-DIEETIGILEKAIEE  266 (330)
Q Consensus       243 ~fD~v-I~N~-dle~a~~~L~~~i~~  266 (330)
                      . |.+ |..+ .+++..++....+..
T Consensus       135 e-~vi~idi~~~~e~vv~~~~~~l~~  159 (161)
T COG3265         135 E-DVLTIDIDQPPEEVVAQALAWLKE  159 (161)
T ss_pred             C-CEEEeeCCCCHHHHHHHHHHHHhc
Confidence            3 444 4445 688888888777653

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.46  E-value=0.014  Score=50.55  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .++++||+|+||||++..|+...
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~   24 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYL   24 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999888764

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK14529 adenylate kinase; Provisional

Probab=96.43  E-value=0.0094  Score=54.76  Aligned_cols=24  Identities=17%  Similarity=0.488  Sum_probs=21.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|+||+||||+|++++|.+.+.
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~   25 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYD   25 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            388999999999999999998874

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=96.42  E-value=0.0056  Score=60.85  Aligned_cols=74  Identities=16%  Similarity=0.201  Sum_probs=46.2

Q ss_pred             cccceEEEecC-CHHHHHHHHHHHHHHhcC----------------------CCccccccccccchhhhhhhccc-----
Q psy933          241 EHFFDLTVVNN-DIEETIGILEKAIEELHT----------------------TPQWIPVSWLAKESDILKSAYEH-----  292 (330)
Q Consensus       241 ~~~fD~vI~N~-dle~a~~~L~~~i~~~~~----------------------~~~WvP~sw~~~~~~~~e~~y~h-----  292 (330)
                      ....|++|.|+ +++++..++..+++....                      .|.|.  ....++...|....|.     
T Consensus       166 ~~~AD~vIdN~~s~e~l~~~v~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~ydp~W~--~~f~~e~~~l~~~l~~~~~~I  243 (395)
T PRK03333        166 RAVADVWLDNSGTPDELVEAVRALWADRLLPFAHNLRARRRAARAPPRLVPADPSWP--AQAQRIVARLKTAAGHKALRV  243 (395)
T ss_pred             HHhCCEEEECCCCHHHHHHHHHHHHHHHHhhHHHHHhcCCCCCCCCceEeCCCCCcH--HHHHHHHHHHHHhcCccceEE
Confidence            45679999998 889999888888755432                      13443  2345667777777774     


Q ss_pred             ---------------eeeEEEEcCCHHHHHHHHHHHHHHh
Q psy933          293 ---------------FFDLTVVNNDIEETIGILEKAIEEL  317 (330)
Q Consensus       293 ---------------~fd~~ivn~~~~~~~~~l~~~~~~~  317 (330)
                                     ..|..|+=.|++... .+...++.+
T Consensus       244 eHIGSTsVpGl~AKPiIDI~v~V~~~~~~~-~~~~~l~~~  282 (395)
T PRK03333        244 DHIGSTAVPGLDAKDVIDIQVTVESLAVAD-ELAEPLAAA  282 (395)
T ss_pred             EEeccCCCCCCccCCeeeEEEeeCChHHHH-HHHHHHHHC
Confidence                           456666666665443 233344433

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.42  E-value=0.0031  Score=58.38  Aligned_cols=38  Identities=16%  Similarity=0.335  Sum_probs=29.3

Q ss_pred             cCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           80 VTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        80 ~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -+|.+..-.+++.+..++|+||+|+|||+|.+.|.-..
T Consensus        12 ~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll   49 (251)
T cd03273          12 KSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVL   49 (251)
T ss_pred             cccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            35666554545556799999999999999999987554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=96.39  E-value=0.0034  Score=63.28  Aligned_cols=57  Identities=21%  Similarity=0.282  Sum_probs=41.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM  150 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f  150 (330)
                      +..|+|+|++|||||||.++|..... .+....|.|||..-.+  +.+|..+.+++..-+
T Consensus       203 g~kVvIvG~~nvGKSSLiN~L~~~~~-aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~  261 (442)
T TIGR00450       203 GFKLAIVGSPNVGKSSLLNALLKQDR-AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGI  261 (442)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCc
Confidence            34799999999999999999987532 3566788899875443  345666666655443

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.0019  Score=65.71  Aligned_cols=65  Identities=18%  Similarity=0.321  Sum_probs=45.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhh---HHhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMS---DIAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~---~i~~~~fle~~~~~  166 (330)
                      .+.-|+|+|+||||||||.+.|...++             |..||+  +|.+-.-.+.+...+   ++.+...+..++..
T Consensus       363 ~GEkvAIlG~SGsGKSTllqLl~~~~~-------------~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr  429 (573)
T COG4987         363 QGEKVAILGRSGSGKSTLLQLLAGAWD-------------PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLR  429 (573)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHhccC-------------CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHH
Confidence            567899999999999999998887664             445554  676665565543333   34566666666666


Q ss_pred             Ccc
Q psy933          167 DAM  169 (330)
Q Consensus       167 g~~  169 (330)
                      +|+
T Consensus       430 ~NL  432 (573)
T COG4987         430 DNL  432 (573)
T ss_pred             HHH
Confidence            663

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.37  E-value=0.0032  Score=55.60  Aligned_cols=27  Identities=19%  Similarity=0.240  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +.+.+.|+|+||||||||+++|+..+.
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh
Confidence            345889999999999999999998764

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=96.36  E-value=0.032  Score=50.74  Aligned_cols=24  Identities=17%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|-|.-||||||+++.|.+.+.
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~   24 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLG   24 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999998753

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.35  E-value=0.0026  Score=52.70  Aligned_cols=27  Identities=19%  Similarity=0.509  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             CCCEEEEEccCCCccccceeeeccccc
Confidence            457999999999999999998876654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.34  E-value=0.0034  Score=55.51  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHH
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLI  114 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~  114 (330)
                      .+..++|+||+|+|||||.+.++
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            46799999999999999999775

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF13173 AAA_14: AAA domain

Probab=96.34  E-value=0.0037  Score=51.78  Aligned_cols=26  Identities=31%  Similarity=0.615  Sum_probs=23.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +++++|.||.|||||||++.+++.+.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            57899999999999999999998754

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.34  E-value=0.0039  Score=58.55  Aligned_cols=44  Identities=25%  Similarity=0.420  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEeccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHD  148 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~  148 (330)
                      .+.++.|+|.||||||||++.|+...+             |..|++  +|.+....+++
T Consensus        38 ~ge~~glVGESG~GKSTlgr~i~~L~~-------------pt~G~i~f~g~~i~~~~~~   83 (268)
T COG4608          38 EGETLGLVGESGCGKSTLGRLILGLEE-------------PTSGEILFEGKDITKLSKE   83 (268)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHcCcC-------------CCCceEEEcCcchhhcchh
Confidence            568999999999999999999998765             445554  66665555543

>PLN03110 Rab GTPase; Provisional

Probab=96.33  E-value=0.092  Score=47.41  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=20.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      --|+++|++|||||||+++|...
T Consensus        13 ~Ki~ivG~~~vGKStLi~~l~~~   35 (216)
T PLN03110         13 FKIVLIGDSGVGKSNILSRFTRN   35 (216)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999764

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.33  E-value=0.014  Score=54.47  Aligned_cols=95  Identities=16%  Similarity=0.242  Sum_probs=49.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEec----ccchhhHHh-----ccceeeEE
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFIS----HDEMMSDIA-----ANQYLEYG  163 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs----~~~f~~~i~-----~~~fle~~  163 (330)
                      +..|+++||+||||||+++.|+...|..-...+..-  .|.+-..++.+...+.    ...|.+.+.     .-+.+-.|
T Consensus       127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE--d~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiig  204 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE--DPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIG  204 (270)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE--SSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEES
T ss_pred             ceEEEEECCCccccchHHHHHhhhccccccceEEec--cccceeecccceEEEEeecCcccHHHHHHHHhcCCCCccccc
Confidence            579999999999999999999999886401111111  2222222333322221    123433332     44566677


Q ss_pred             eecCccccccHHHHHHHHHhCCeE-EEEeCH
Q psy933          164 THEDAMYGTKLETIRRIHQEGKIA-ILDVEP  193 (330)
Q Consensus       164 ~~~g~~YGts~~~i~~v~~~gk~~-vldv~~  193 (330)
                      |..+.   ..... -+++..|..+ +..++.
T Consensus       205 EiR~~---e~~~~-~~a~~tGh~~~~tT~Ha  231 (270)
T PF00437_consen  205 EIRDP---EAAEA-IQAANTGHLGSLTTLHA  231 (270)
T ss_dssp             CE-SC---HHHHH-HHHHHTT-EEEEEEEE-
T ss_pred             ccCCH---hHHHH-HHhhccCCceeeeeeec
Confidence            66653   22333 3355667666 655553

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.32  E-value=0.0041  Score=45.67  Aligned_cols=22  Identities=14%  Similarity=0.454  Sum_probs=19.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~  115 (330)
                      ...+|+||+|+|||||.+.+.-
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998754

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.31  E-value=0.0031  Score=61.73  Aligned_cols=27  Identities=26%  Similarity=0.475  Sum_probs=24.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+++++|+||+|+|||||++.|++...
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            468999999999999999999998764

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=96.31  E-value=0.027  Score=61.38  Aligned_cols=27  Identities=30%  Similarity=0.556  Sum_probs=23.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      +.-++|+||+|+|||+|+..|+.....
T Consensus       199 ~~n~lL~G~pGvGKT~l~~~la~~i~~  225 (857)
T PRK10865        199 KNNPVLIGEPGVGKTAIVEGLAQRIIN  225 (857)
T ss_pred             cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence            347889999999999999999987653

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=96.30  E-value=0.018  Score=50.61  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=19.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~  115 (330)
                      +.++|.|..|||||||+++|++
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~   22 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLK   22 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3688999999999999999994

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=96.29  E-value=0.1  Score=46.86  Aligned_cols=22  Identities=14%  Similarity=0.255  Sum_probs=19.9

Q ss_pred             EEEEcCCCccHHHHHHHHHhhC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      |+|+|.+|+|||||+++|+...
T Consensus         2 i~iiG~~~~GKStL~~~Ll~~~   23 (208)
T cd04166           2 FLTCGSVDDGKSTLIGRLLYDS   23 (208)
T ss_pred             EEEEECCCCCHHHHHHHHHHHc
Confidence            7899999999999999998653

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.29  E-value=0.003  Score=58.65  Aligned_cols=35  Identities=20%  Similarity=0.394  Sum_probs=29.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTT  129 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TT  129 (330)
                      -+|++|+||||||+|+..|+...+..|...+-.|.
T Consensus        15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~   49 (241)
T PF04665_consen   15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP   49 (241)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence            47889999999999999999998888866655543

This is thought to be an ATPase involved in viral DNA packaging [].

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.29  E-value=0.0026  Score=57.12  Aligned_cols=25  Identities=28%  Similarity=0.553  Sum_probs=22.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +.|+|+||+||||||.+-+|+..+.
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~   26 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLK   26 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHh
Confidence            6899999999999999999987754

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=96.29  E-value=0.004  Score=58.08  Aligned_cols=56  Identities=20%  Similarity=0.284  Sum_probs=36.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCC--cccCCeeEEEecccch
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRS--DEENGRAYYFISHDEM  150 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~--~E~~G~dy~fvs~~~f  150 (330)
                      -.|+|+|.+|||||||+|.|+..... .....+.+|+....  ++.+|..+.++|..-|
T Consensus        32 ~~IllvG~tGvGKSSliNaLlg~~~~-~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl   89 (249)
T cd01853          32 LTILVLGKTGVGKSSTINSIFGERKA-ATSAFQSETLRVREVSGTVDGFKLNIIDTPGL   89 (249)
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCceEEEEEEEEEECCeEEEEEECCCc
Confidence            47999999999999999999976421 12223334443322  2446677777766554

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd01878 HflX HflX subfamily

Probab=96.28  E-value=0.0054  Score=54.41  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=21.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..|+|+|++|||||||.++|....
T Consensus        42 ~~I~iiG~~g~GKStLl~~l~~~~   65 (204)
T cd01878          42 PTVALVGYTNAGKSTLFNALTGAD   65 (204)
T ss_pred             CeEEEECCCCCCHHHHHHHHhcch
Confidence            479999999999999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.28  E-value=0.0033  Score=55.16  Aligned_cols=22  Identities=32%  Similarity=0.647  Sum_probs=20.6

Q ss_pred             EEEEcCCCccHHHHHHHHHhhC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      |+|+||+||||||+++.|.+.+
T Consensus         2 I~i~G~pGsGKst~a~~La~~~   23 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKY   23 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7899999999999999999875

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=96.27  E-value=0.01  Score=52.98  Aligned_cols=25  Identities=32%  Similarity=0.495  Sum_probs=22.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .-|+++|++|||||||+++|.....
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~   30 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEF   30 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcC
Confidence            4689999999999999999997654

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.26  E-value=0.048  Score=51.26  Aligned_cols=28  Identities=11%  Similarity=0.318  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      ....|+|+||+|+||||+++.|+...+.
T Consensus        79 ~~GlilisG~tGSGKTT~l~all~~i~~  106 (264)
T cd01129          79 PHGIILVTGPTGSGKTTTLYSALSELNT  106 (264)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence            3458999999999999999999877653

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK06620 hypothetical protein; Validated

Probab=96.25  E-value=0.021  Score=51.89  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=19.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ++++|.||+|+|||+|++.+...
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~   67 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNL   67 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhc
Confidence            67999999999999999976544

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.25  E-value=0.0038  Score=55.59  Aligned_cols=122  Identities=16%  Similarity=0.152  Sum_probs=68.1

Q ss_pred             ccccccHHHHHHHHHhCCeEEEE--------eCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhh
Q psy933          168 AMYGTKLETIRRIHQEGKIAILD--------VEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSA  239 (330)
Q Consensus       168 ~~YGts~~~i~~v~~~gk~~vld--------v~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~  239 (330)
                      +||-.+.+..+..++.|...--.        ++.++++..-..+. ..++-+.+.                 ....+...
T Consensus        51 dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt~~~~i~~~~~~g~-~~i~d~~~~-----------------g~~~l~~~  112 (186)
T PRK14737         51 TYFFLTIEEFKKGIADGEFLEWAEVHDNYYGTPKAFIEDAFKEGR-SAIMDIDVQ-----------------GAKIIKEK  112 (186)
T ss_pred             eeEeCCHHHHHHHHHcCCeEEEEEECCeeecCcHHHHHHHHHcCC-eEEEEcCHH-----------------HHHHHHHh
Confidence            36778899999999888765432        23344555544443 222222221                 11122223


Q ss_pred             cccc-ceEEEecCCHHHHHHHHHHHHHHhcCCCcccccccccc--chhhhhhhccceeeEEEEcCCHHHHHHHHHHHHH
Q psy933          240 YEHF-FDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWLAK--ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIE  315 (330)
Q Consensus       240 ~~~~-fD~vI~N~dle~a~~~L~~~i~~~~~~~~WvP~sw~~~--~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~  315 (330)
                      |+.. +-.-|.-.+.+...+.|.       .....-+ .-+.+  +++.+|..++|+||.||+|+|+++|+.+|+++|.
T Consensus       113 ~~~~~~~Ifi~pps~e~l~~RL~-------~R~~~s~-e~i~~Rl~~~~~e~~~~~~~D~vI~N~dle~a~~ql~~ii~  183 (186)
T PRK14737        113 FPERIVTIFIEPPSEEEWEERLI-------HRGTDSE-ESIEKRIENGIIELDEANEFDYKIINDDLEDAIADLEAIIC  183 (186)
T ss_pred             CCCCeEEEEEECCCHHHHHHHHH-------hcCCCCH-HHHHHHHHHHHHHHhhhccCCEEEECcCHHHHHHHHHHHHh
Confidence            4432 222233346655444443       2222211 11211  2345788899999999999999999999998874

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=96.25  E-value=0.0034  Score=52.32  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+|++||||||+++.|.+.+
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~   23 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKL   23 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999875

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=96.24  E-value=0.0056  Score=52.72  Aligned_cols=24  Identities=25%  Similarity=0.540  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|+|++|||||+|.++|...++
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~   24 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIP   24 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCC
Confidence            379999999999999999986543

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00154 Rab Rab family

Probab=96.22  E-value=0.0058  Score=50.46  Aligned_cols=23  Identities=26%  Similarity=0.559  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+++|++|||||||.++|....
T Consensus         2 ~i~~~G~~~~GKStl~~~l~~~~   24 (159)
T cd00154           2 KIVLIGDSGVGKTSLLLRFVDGK   24 (159)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCc
Confidence            37899999999999999997553

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=96.22  E-value=0.0029  Score=54.96  Aligned_cols=52  Identities=17%  Similarity=0.181  Sum_probs=39.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEeccc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHD  148 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~  148 (330)
                      .|+|+|.++||||||.|+|.....  -...-|-||+.+..|-  ..+..+.|||..
T Consensus         2 ~ialvG~PNvGKStLfN~Ltg~~~--~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlP   55 (156)
T PF02421_consen    2 RIALVGNPNVGKSTLFNALTGAKQ--KVGNWPGTTVEKKEGIFKLGDQQVELVDLP   55 (156)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTSE--EEEESTTSSSEEEEEEEEETTEEEEEEE--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc--eecCCCCCCeeeeeEEEEecCceEEEEECC
Confidence            489999999999999999998763  3455688888776663  346777777654

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=96.22  E-value=0.0034  Score=56.75  Aligned_cols=29  Identities=28%  Similarity=0.387  Sum_probs=24.8

Q ss_pred             cccceEEEecC-CHHHHHHHHHHHHHHhcC
Q psy933          241 EHFFDLTVVNN-DIEETIGILEKAIEELHT  269 (330)
Q Consensus       241 ~~~fD~vI~N~-dle~a~~~L~~~i~~~~~  269 (330)
                      ...-|+||.|+ +++.+.+++..++..+..
T Consensus       166 ~~~ad~vi~n~~~i~~l~~~i~~~~~~~~~  195 (201)
T COG0237         166 LALADVVIDNDGSIENLLEQIEKLLKELLG  195 (201)
T ss_pred             HhhcCChhhcCCCHHHHHHHHHHHHHHHHh
Confidence            46789999998 999999999999887654

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=96.21  E-value=0.027  Score=59.32  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=21.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .++|.||.|+||||+++.|++...
T Consensus        40 AyLf~Gp~GvGKTTlAr~lAk~L~   63 (647)
T PRK07994         40 AYLFSGTRGVGKTTIARLLAKGLN   63 (647)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhh
Confidence            489999999999999999988754

>CHL00181 cbbX CbbX; Provisional

Probab=96.20  E-value=0.0094  Score=56.71  Aligned_cols=25  Identities=12%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +..++|.||+|+|||++++.|.+..
T Consensus        59 ~~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         59 GLHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999997753

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.19  E-value=0.0042  Score=50.80  Aligned_cols=26  Identities=23%  Similarity=0.505  Sum_probs=20.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ++.++|.||+|+|||++++++.+.+.
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~   29 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLN   29 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhH
Confidence            46899999999999999999998764

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=96.18  E-value=0.018  Score=48.11  Aligned_cols=50  Identities=18%  Similarity=0.204  Sum_probs=32.7

Q ss_pred             EEcCCCccHHHHHHHHHhhCCCCccccccccccCCCC--cccCCeeEEEecccc
Q psy933           98 LLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRS--DEENGRAYYFISHDE  149 (330)
Q Consensus        98 LvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~--~E~~G~dy~fvs~~~  149 (330)
                      |+|++|||||||.++|....  .+....+.||+....  -+.+|.++.+++..-
T Consensus         1 l~G~~~~GKssl~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG   52 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGAR--QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPG   52 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCc--ccccCCCCcccccceEEEeeCCeEEEEEECCC
Confidence            58999999999999997653  233344566665433  244566666665543

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.18  E-value=0.0032  Score=57.54  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +|.|+||+|||||||++.|...+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l   23 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALL   23 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHH
Confidence            37899999999999999998876

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.17  E-value=0.013  Score=57.70  Aligned_cols=26  Identities=19%  Similarity=0.291  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .++.+.|.||+|+|||.+++.++.+.
T Consensus       147 ~PlgllL~GPPGcGKTllAraiA~el  172 (413)
T PLN00020        147 VPLILGIWGGKGQGKSFQCELVFKKM  172 (413)
T ss_pred             CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence            34678889999999999999998875

>PLN02842 nucleotide kinase

Probab=96.17  E-value=0.085  Score=54.00  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=19.4

Q ss_pred             EEEcCCCccHHHHHHHHHhhCC
Q psy933           97 VLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        97 vLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+||+||||||++++|.+.+.
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg   22 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFG   22 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhC
Confidence            3799999999999999998763

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.17  E-value=0.0041  Score=53.21  Aligned_cols=24  Identities=25%  Similarity=0.527  Sum_probs=20.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +.|.|+||+|||||||+++|....
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~   25 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEE   25 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCC
Confidence            468899999999999999997653

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=96.17  E-value=0.0071  Score=55.17  Aligned_cols=114  Identities=11%  Similarity=0.190  Sum_probs=55.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCC------C--ccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEee
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPD------K--YAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTH  165 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~------~--f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~  165 (330)
                      +.++|+||+|+|||.++-.|++.+..      +  ...-++.+|-.|.+.|..|.+-.+.+....    ..|.+ --.++
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l----~~G~i-~a~ea   76 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPL----SDGII-NAEEA   76 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----G----GG-S---HHHH
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccc----cCCCc-CHHHH
Confidence            47899999999999999999988542      1  122366788899999999998877764333    23331 00000


Q ss_pred             cCccccccHHHHHHHHHhCCeEEEEeC-HHHHHHHHhcCC--CC---EEEEEccCccc
Q psy933          166 EDAMYGTKLETIRRIHQEGKIAILDVE-PQALKILRTGEF--SP---FVVFIAAPQLQ  217 (330)
Q Consensus       166 ~g~~YGts~~~i~~v~~~gk~~vldv~-~~~v~~L~~~~~--~p---~vIfI~pps~~  217 (330)
                      +.    .-++.|.+.. .++-|||+-. ..-++.+-+..+  .+   .++.+..|+.+
T Consensus        77 ~~----~Li~~v~~~~-~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~  129 (233)
T PF01745_consen   77 HE----RLISEVNSYS-AHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEE  129 (233)
T ss_dssp             HH----HHHHHHHTTT-TSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HH
T ss_pred             HH----HHHHHHHhcc-ccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChH
Confidence            00    1122222222 3677888764 344555554322  23   35566666544

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.16  E-value=0.0047  Score=55.57  Aligned_cols=27  Identities=19%  Similarity=0.364  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999987654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=96.16  E-value=0.0055  Score=60.26  Aligned_cols=27  Identities=22%  Similarity=0.380  Sum_probs=24.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||||+|||||.+.|....+
T Consensus        18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~   44 (363)
T TIGR01186        18 KGEIFVIMGLSGSGKSTTVRMLNRLIE   44 (363)
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            568999999999999999999987765

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=96.16  E-value=0.0047  Score=64.68  Aligned_cols=56  Identities=20%  Similarity=0.282  Sum_probs=40.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCcccc--ccccccCCC-CcccCCeeEEEecccchh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYP--VPHTTRSPR-SDEENGRAYYFISHDEMM  151 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~--v~~TTR~pr-~~E~~G~dy~fvs~~~f~  151 (330)
                      ..|+|+|++|+||||++|.|+...  .|...  -+.||+.-. .++.+|....+|+..-|.
T Consensus       119 lrIvLVGKTGVGKSSLINSILGek--vf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~  177 (763)
T TIGR00993       119 LNILVLGKSGVGKSATINSIFGEV--KFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLK  177 (763)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccc--cccccCCCCCceEEEEEEEEECCceEEEEECCCCC
Confidence            469999999999999999998763  23332  467887532 245678888888776553

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.15  E-value=0.0046  Score=56.53  Aligned_cols=28  Identities=18%  Similarity=0.370  Sum_probs=24.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      .+..|+|+||+|+|||||++.|....+.
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~   59 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLEALLQQ   59 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            3468999999999999999999987764

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=96.15  E-value=0.093  Score=49.83  Aligned_cols=70  Identities=23%  Similarity=0.345  Sum_probs=41.9

Q ss_pred             HHHHHHHhcCCCCEEEEEccCcccccc---C---------chHHHHHHHHHHHHHHhhccccceEEEecCCHHHHHHHHH
Q psy933          194 QALKILRTGEFSPFVVFIAAPQLQNLS---D---------YDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILE  261 (330)
Q Consensus       194 ~~v~~L~~~~~~p~vIfI~pps~~~l~---~---------~~e~~~rl~~~~~~ie~~~~~~fD~vI~N~dle~a~~~L~  261 (330)
                      +.+..|++.+....+||+.+.+-.-++   +         ....++-+.++.+.|+ ......|.||...++.  ..+|+
T Consensus        71 ~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~-~lr~~Ad~vIDTs~l~--~~~Lr  147 (284)
T PF03668_consen   71 EALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLE-PLRERADLVIDTSNLS--VHQLR  147 (284)
T ss_pred             HHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHH-HHHHhCCEEEECCCCC--HHHHH
Confidence            345667778888999999986532222   1         1112334555555443 4567899999887543  35555


Q ss_pred             HHHHH
Q psy933          262 KAIEE  266 (330)
Q Consensus       262 ~~i~~  266 (330)
                      +.|..
T Consensus       148 ~~i~~  152 (284)
T PF03668_consen  148 ERIRE  152 (284)
T ss_pred             HHHHH
Confidence            55544

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.15  E-value=0.0048  Score=55.51  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            467999999999999999999987654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd04154 Arl2 Arl2 subfamily

Probab=96.14  E-value=0.008  Score=51.78  Aligned_cols=23  Identities=22%  Similarity=0.524  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ..|+|+|++|||||+|+++|...
T Consensus        15 ~kv~ivG~~~~GKTsL~~~l~~~   37 (173)
T cd04154          15 MRILILGLDNAGKTTILKKLLGE   37 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHccC
Confidence            46889999999999999999865

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.14  E-value=0.0049  Score=55.19  Aligned_cols=27  Identities=19%  Similarity=0.390  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467999999999999999999886653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=96.14  E-value=0.21  Score=44.55  Aligned_cols=22  Identities=14%  Similarity=0.244  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .|+|+|++|+|||||.+.|...
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~   23 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGV   23 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PF05729 NACHT: NACHT domain

Probab=96.13  E-value=0.0049  Score=52.00  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=22.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      |+++|.|++|+|||+++.+++....
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~   25 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLA   25 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHH
Confidence            6899999999999999999987654

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.13  E-value=0.0041  Score=57.33  Aligned_cols=22  Identities=41%  Similarity=0.626  Sum_probs=20.8

Q ss_pred             EEEEcCCCccHHHHHHHHHhhC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      |+|+||+||||+|++++|.+.+
T Consensus         9 Ivl~G~PGsGK~T~a~~La~~~   30 (229)
T PTZ00088          9 IVLFGAPGVGKGTFAEILSKKE   30 (229)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            9999999999999999999875

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.13  E-value=0.0049  Score=56.26  Aligned_cols=27  Identities=15%  Similarity=0.471  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            567999999999999999999987654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.13  E-value=0.005  Score=54.31  Aligned_cols=27  Identities=30%  Similarity=0.479  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999998886654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd04159 Arl10_like Arl10-like subfamily

Probab=96.13  E-value=0.0039  Score=51.59  Aligned_cols=21  Identities=19%  Similarity=0.471  Sum_probs=19.2

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+||+|||||||.++|...
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            789999999999999999764

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.13  E-value=0.013  Score=55.59  Aligned_cols=25  Identities=12%  Similarity=0.303  Sum_probs=21.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +.+++|.||+|+|||++++.+.+..
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHH
Confidence            4589999999999999997776553

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.13  E-value=0.0051  Score=55.13  Aligned_cols=27  Identities=15%  Similarity=0.317  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467999999999999999999987653

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PLN02772 guanylate kinase

Probab=96.11  E-value=0.024  Score=56.25  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=28.2

Q ss_pred             hhhh-hhccceeeEEEEcCCHHHHHHHHHHHHHH
Q psy933          284 DILK-SAYEHFFDLTVVNNDIEETIGILEKAIEE  316 (330)
Q Consensus       284 ~~~e-~~y~h~fd~~ivn~~~~~~~~~l~~~~~~  316 (330)
                      ..|+ ..|+|+||.+|+||||++|+++|+++|..
T Consensus       285 ~Ei~~~~~~~~fD~vIvNDdLe~A~~~L~~iL~~  318 (398)
T PLN02772        285 AELEQGKSSGIFDHILYNDNLEECYKNLKKLLGL  318 (398)
T ss_pred             HHHhhccccCCCCEEEECCCHHHHHHHHHHHHhh
Confidence            4566 35789999999999999999999998853

>cd00876 Ras Ras family

Probab=96.10  E-value=0.0052  Score=51.30  Aligned_cols=21  Identities=38%  Similarity=0.683  Sum_probs=19.2

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+||+|||||+|.++|...
T Consensus         2 i~i~G~~~~GKTsli~~l~~~   22 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKG   22 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999854

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.10  E-value=0.0052  Score=55.94  Aligned_cols=27  Identities=15%  Similarity=0.278  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999987654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=96.10  E-value=0.019  Score=49.43  Aligned_cols=129  Identities=18%  Similarity=0.330  Sum_probs=65.5

Q ss_pred             CCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhc---ccee-eEEeecCccc-cccHHH
Q psy933          102 HGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAA---NQYL-EYGTHEDAMY-GTKLET  176 (330)
Q Consensus       102 sGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~---~~fl-e~~~~~g~~Y-Gts~~~  176 (330)
                      +||||||+.+.|++...                       +-|+|-+.+-.....   ++|+ ++|   ...| -.-.+.
T Consensus         1 ~GsGKStvg~~lA~~L~-----------------------~~fiD~D~~i~~~~g~si~~i~~~~G---~~~fr~~E~~~   54 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLG-----------------------RPFIDLDDEIEERTGMSISEIFAEEG---EEAFRELESEA   54 (158)
T ss_dssp             TTSSHHHHHHHHHHHHT-----------------------SEEEEHHHHHHHHHTSHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhC-----------------------CCccccCHHHHHHhCCcHHHHHHcCC---hHHHHHHHHHH
Confidence            59999999999998753                       345554443221111   1111 111   0111 122344


Q ss_pred             HHHHHHhCCeEEEEe------CHHHHHHHHhcCCCCEEEEEccCccccccC------------chH---HHHHHHHHHHH
Q psy933          177 IRRIHQEGKIAILDV------EPQALKILRTGEFSPFVVFIAAPQLQNLSD------------YDG---SLEKLAKESDI  235 (330)
Q Consensus       177 i~~v~~~gk~~vldv------~~~~v~~L~~~~~~p~vIfI~pps~~~l~~------------~~e---~~~rl~~~~~~  235 (330)
                      +.+++..+ .||+.+      .++....|+.   ...+|||..+ .+.+.+            ...   .+.++..+.  
T Consensus        55 l~~l~~~~-~~VIa~GGG~~~~~~~~~~L~~---~g~vI~L~~~-~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R--  127 (158)
T PF01202_consen   55 LRELLKEN-NCVIACGGGIVLKEENRELLKE---NGLVIYLDAD-PEELAERLRARDNRPLLKGKMEHEEILELLFER--  127 (158)
T ss_dssp             HHHHHCSS-SEEEEE-TTGGGSHHHHHHHHH---HSEEEEEE---HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHH--
T ss_pred             HHHHhccC-cEEEeCCCCCcCcHHHHHHHHh---CCEEEEEeCC-HHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHH--
Confidence            45555444 566665      3455566663   3568888765 222221            011   111222222  


Q ss_pred             HHhhccccceEEEecC-C-HHHHHHHHHHHH
Q psy933          236 LKSAYEHFFDLTVVNN-D-IEETIGILEKAI  264 (330)
Q Consensus       236 ie~~~~~~fD~vI~N~-d-le~a~~~L~~~i  264 (330)
                       +..|...-|+++..+ . .++.+++|.+.|
T Consensus       128 -~~~Y~~~a~~~v~~~~~~~~~i~~~i~~~l  157 (158)
T PF01202_consen  128 -EPLYEQAADIVVDTDGSPPEEIAEEILEFL  157 (158)
T ss_dssp             -HHHHHHHSSEEEETSSCHHHHHHHHHHHHH
T ss_pred             -HHHHHhcCeEEEeCCCCCHHHHHHHHHHHh
Confidence             234667778888776 3 378888888766

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>cd01889 SelB_euk SelB subfamily

Probab=96.10  E-value=0.14  Score=45.06  Aligned_cols=21  Identities=19%  Similarity=0.374  Sum_probs=19.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHh
Q psy933           95 TLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~  115 (330)
                      -|+|+|++|+|||||+++|..
T Consensus         2 ~i~i~G~~~~GKstLi~~l~~   22 (192)
T cd01889           2 NVGVLGHVDSGKTSLAKALSE   22 (192)
T ss_pred             eEEEEecCCCCHHHHHHHHHh
Confidence            389999999999999999986

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=96.09  E-value=0.035  Score=60.46  Aligned_cols=28  Identities=29%  Similarity=0.547  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      .+..++|+||+|+|||+|+..|+.....
T Consensus       193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~  220 (852)
T TIGR03346       193 TKNNPVLIGEPGVGKTAIVEGLAQRIVN  220 (852)
T ss_pred             CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence            3357789999999999999999987654

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.08  E-value=0.0065  Score=53.45  Aligned_cols=39  Identities=23%  Similarity=0.244  Sum_probs=30.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR  133 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr  133 (330)
                      -.++++|.+++|||||.+.|...... -....|.|||...
T Consensus       118 ~~~~~vG~pnvGKSslin~l~~~~~~-~~~~~pg~T~~~~  156 (172)
T cd04178         118 ITVGVVGFPNVGKSSLINSLKRSRAC-NVGATPGVTKSMQ  156 (172)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCcccc-eecCCCCeEcceE
Confidence            47899999999999999999976542 3455778887543

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.08  E-value=0.0054  Score=55.26  Aligned_cols=27  Identities=26%  Similarity=0.441  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999987653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=96.08  E-value=0.0074  Score=54.18  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=22.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++..+.|+||||+|||||++.|....
T Consensus        27 ~Gef~fl~GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          27 KGEFVFLTGPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhh
Confidence            45689999999999999999887653

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.08  E-value=0.005  Score=55.53  Aligned_cols=27  Identities=26%  Similarity=0.625  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999998876654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.07  E-value=0.0054  Score=56.12  Aligned_cols=27  Identities=11%  Similarity=0.315  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            467999999999999999999886654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.07  E-value=0.0057  Score=54.79  Aligned_cols=27  Identities=19%  Similarity=0.326  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|+...+
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            567999999999999999999987654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=96.04  E-value=0.0073  Score=50.82  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3889999999999999999865

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.04  E-value=0.0059  Score=55.07  Aligned_cols=27  Identities=19%  Similarity=0.300  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|+...+
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999987654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd01860 Rab5_related Rab5-related subfamily

Probab=96.03  E-value=0.0072  Score=50.97  Aligned_cols=23  Identities=30%  Similarity=0.508  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+++|++|||||+|+++|+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (163)
T cd01860           3 KLVLLGDSSVGKSSLVLRFVKNE   25 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998653

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=96.03  E-value=0.0057  Score=55.33  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|+...+
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            467999999999999999998886643

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.03  E-value=0.006  Score=54.74  Aligned_cols=27  Identities=26%  Similarity=0.443  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999998886653

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=96.03  E-value=0.0051  Score=51.02  Aligned_cols=22  Identities=18%  Similarity=0.576  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||+|+++|...
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~   23 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGE   23 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCC
Confidence            4899999999999999999854

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=96.02  E-value=0.0057  Score=70.25  Aligned_cols=80  Identities=18%  Similarity=0.296  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhh---HHhccceeeEEeecCc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMS---DIAANQYLEYGTHEDA  168 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~---~i~~~~fle~~~~~g~  168 (330)
                      .+..|+|+|+||+|||||++.|+..++  ..+.|          -+||+|..-++...+.+   .+.++.++..|+...|
T Consensus      1244 ~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I----------~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271      1244 GGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEI----------QIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEE----------EECCEEcccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence            567899999999999999999987764  22222          25899988887777665   4458888988888877


Q ss_pred             c--cc-ccHHHHHHHHHh
Q psy933          169 M--YG-TKLETIRRIHQE  183 (330)
Q Consensus       169 ~--YG-ts~~~i~~v~~~  183 (330)
                      +  ++ .+.+.+.++++.
T Consensus      1312 Ldp~~~~tdeei~~aL~~ 1329 (1490)
T TIGR01271      1312 LDPYEQWSDEEIWKVAEE 1329 (1490)
T ss_pred             hCcccCCCHHHHHHHHHH
Confidence            5  22 244555666543

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0734|consensus

Probab=96.02  E-value=0.012  Score=60.01  Aligned_cols=40  Identities=20%  Similarity=0.467  Sum_probs=33.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhH
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD  153 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~  153 (330)
                      ++=|.|+||+|.|||-|++.++-+                     .|++|+|.+-.+|++|
T Consensus       337 PKGVLLvGPPGTGKTlLARAvAGE---------------------A~VPFF~~sGSEFdEm  376 (752)
T KOG0734|consen  337 PKGVLLVGPPGTGKTLLARAVAGE---------------------AGVPFFYASGSEFDEM  376 (752)
T ss_pred             CCceEEeCCCCCchhHHHHHhhcc---------------------cCCCeEeccccchhhh
Confidence            467999999999999999877632                     4678999999988766

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.02  E-value=0.0061  Score=54.60  Aligned_cols=27  Identities=22%  Similarity=0.405  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999987654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.02  E-value=0.0061  Score=54.44  Aligned_cols=27  Identities=19%  Similarity=0.399  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467999999999999999999886643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.01  E-value=0.006  Score=55.70  Aligned_cols=27  Identities=19%  Similarity=0.346  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGLVE   52 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            467999999999999999999987653

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=96.01  E-value=0.0055  Score=51.28  Aligned_cols=22  Identities=41%  Similarity=0.706  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus         3 ki~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           3 KLVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999999864

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK14528 adenylate kinase; Provisional

Probab=96.00  E-value=0.0058  Score=54.18  Aligned_cols=24  Identities=21%  Similarity=0.574  Sum_probs=21.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +.|+|+||+||||||++++|.+.+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            458899999999999999998775

>cd04125 RabA_like RabA-like subfamily

Probab=95.99  E-value=0.18  Score=43.92  Aligned_cols=22  Identities=23%  Similarity=0.576  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+++|++|||||||+++|...
T Consensus         2 ki~v~G~~~vGKSsli~~~~~~   23 (188)
T cd04125           2 KVVIIGDYGVGKSSLLKRFTED   23 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999999853

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=95.99  E-value=0.0077  Score=55.79  Aligned_cols=27  Identities=22%  Similarity=0.336  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   52 (256)
T TIGR03873        26 PGSLTGLLGPNGSGKSTLLRLLAGALR   52 (256)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            467999999999999999999887654

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=95.98  E-value=0.0063  Score=55.02  Aligned_cols=27  Identities=26%  Similarity=0.517  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   56 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGLLK   56 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999987654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.98  E-value=0.0064  Score=54.56  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999987654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=95.97  E-value=0.0097  Score=48.65  Aligned_cols=23  Identities=26%  Similarity=0.547  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+|+|++|+|||||++.|....
T Consensus         3 ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         3 KIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998653

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=95.97  E-value=0.12  Score=50.15  Aligned_cols=39  Identities=21%  Similarity=0.281  Sum_probs=31.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc
Q psy933           96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE  136 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E  136 (330)
                      |.|+|-+.+|||||.+.+...-|.  ...=|.||-.|.-|=
T Consensus       162 VGLVG~PNaGKSTlls~vS~AkPK--IadYpFTTL~PnLGv  200 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAKPK--IADYPFTTLVPNLGV  200 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcCCc--ccCCccccccCcccE
Confidence            678999999999999999988774  233467888887763

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.96  E-value=0.0061  Score=54.69  Aligned_cols=27  Identities=15%  Similarity=0.459  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   50 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLLK   50 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            467999999999999999998876543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.96  E-value=0.048  Score=56.03  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=21.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..++|.||+|+||||+++.|++..
T Consensus        39 ha~Lf~Gp~G~GKTt~A~~lAk~l   62 (509)
T PRK14958         39 HAYLFTGTRGVGKTTISRILAKCL   62 (509)
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999998865

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=95.96  E-value=0.0069  Score=59.27  Aligned_cols=54  Identities=20%  Similarity=0.247  Sum_probs=37.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc---CCeeEEEecccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE---NGRAYYFISHDE  149 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~---~G~dy~fvs~~~  149 (330)
                      ..|+|+|.++||||||.++|....  .+....+.||+.|....+   +|..+.++|..-
T Consensus       190 ~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G  246 (351)
T TIGR03156       190 PTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVG  246 (351)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEEeCCCceEEEEecCc
Confidence            579999999999999999998753  344556778887754322   344555554443

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=95.96  E-value=0.0081  Score=51.36  Aligned_cols=23  Identities=26%  Similarity=0.470  Sum_probs=20.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      --|+|+|++|||||+|++++...
T Consensus         4 ~ki~vvG~~~~GKSsl~~~~~~~   26 (167)
T cd01867           4 FKLLLIGDSGVGKSCLLLRFSED   26 (167)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            36899999999999999999854

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01861 Rab6 Rab6 subfamily

Probab=95.96  E-value=0.0087  Score=50.35  Aligned_cols=22  Identities=32%  Similarity=0.599  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         2 ki~liG~~~~GKSsli~~l~~~   23 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYD   23 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4889999999999999999854

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=95.95  E-value=0.006  Score=52.70  Aligned_cols=27  Identities=22%  Similarity=0.586  Sum_probs=18.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .++.++|.|++|+|||+|.++++....
T Consensus        23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen   23 SPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             ----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            357899999999999999999887654

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=95.94  E-value=0.011  Score=50.00  Aligned_cols=23  Identities=9%  Similarity=0.303  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      +.|+|+|++|||||||.++|...
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~   23 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKT   23 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhc
Confidence            36899999999999999999864

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=95.94  E-value=0.0086  Score=55.55  Aligned_cols=27  Identities=19%  Similarity=0.464  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~   50 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVLK   50 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            567999999999999999999886643

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=95.94  E-value=0.0062  Score=55.49  Aligned_cols=27  Identities=19%  Similarity=0.315  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGFLR   51 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            467999999999999999999886654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd04169 RF3 RF3 subfamily

Probab=95.94  E-value=0.056  Score=50.83  Aligned_cols=24  Identities=17%  Similarity=0.411  Sum_probs=21.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .|.|+|+|++|+|||||.++|+..
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~   25 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLF   25 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHh
Confidence            378999999999999999999854

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=95.94  E-value=0.11  Score=50.69  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.7

Q ss_pred             EEEEcCCCccHHHHHHHHHhhC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++|+|++|+||||+++.|....
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l   23 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATL   23 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999998664

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PLN02459 probable adenylate kinase

Probab=95.94  E-value=0.016  Score=54.54  Aligned_cols=24  Identities=29%  Similarity=0.475  Sum_probs=21.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|+||+|+||+|++.+|.+.+.
T Consensus        31 ~ii~~G~PGsGK~T~a~~la~~~~   54 (261)
T PLN02459         31 NWVFLGCPGVGKGTYASRLSKLLG   54 (261)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            488899999999999999998763

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.93  E-value=0.044  Score=57.76  Aligned_cols=24  Identities=25%  Similarity=0.512  Sum_probs=21.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..++|.||.|+||||+++.|++..
T Consensus        38 HAyLF~GPpGvGKTTlAriLAK~L   61 (702)
T PRK14960         38 HAYLFTGTRGVGKTTIARILAKCL   61 (702)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998875

>KOG3347|consensus

Probab=95.92  E-value=0.031  Score=48.36  Aligned_cols=25  Identities=24%  Similarity=0.526  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++-|+|.|.+|+||||++.+|++..
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae~~   31 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAEKT   31 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHHHh
Confidence            3568999999999999999999765

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.92  E-value=0.0071  Score=54.64  Aligned_cols=27  Identities=15%  Similarity=0.309  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457999999999999999999886643

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.92  E-value=0.0075  Score=52.80  Aligned_cols=27  Identities=19%  Similarity=0.330  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457999999999999999999986654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=95.92  E-value=0.0077  Score=54.59  Aligned_cols=26  Identities=23%  Similarity=0.341  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..++|+||+|+|||||++.|+...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            56799999999999999999998776

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.90  E-value=0.007  Score=54.70  Aligned_cols=24  Identities=25%  Similarity=0.524  Sum_probs=20.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~  115 (330)
                      .+-.+|++||||||||||.|.++-
T Consensus        30 ~ge~vv~lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          30 SGELVVVLGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             CCCEEEEEcCCCccHHHHHHHHhc
Confidence            356899999999999999996653

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.90  E-value=0.0074  Score=54.50  Aligned_cols=27  Identities=22%  Similarity=0.412  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|+...+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   51 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLLK   51 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999987643

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.90  E-value=0.009  Score=56.34  Aligned_cols=27  Identities=15%  Similarity=0.334  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~~   58 (279)
T PRK13635         32 EGEWVAIVGHNGSGKSTLAKLLNGLLL   58 (279)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            567999999999999999998887654

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.89  E-value=0.0076  Score=53.66  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|+...+
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467999999999999999999987654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=95.88  E-value=0.032  Score=48.22  Aligned_cols=24  Identities=13%  Similarity=0.337  Sum_probs=20.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ..-|+|+|++|||||||.++|...
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~   38 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLG   38 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccC
Confidence            356899999999999999999753

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.88  E-value=0.0072  Score=55.96  Aligned_cols=29  Identities=21%  Similarity=0.292  Sum_probs=24.8

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      ..+..+.|+|+||||||||++.|+.....
T Consensus        31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p   59 (252)
T COG1124          31 ERGETLGIVGESGSGKSTLARLLAGLEKP   59 (252)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence            35679999999999999999999876553

>PTZ00258 GTP-binding protein; Provisional

Probab=95.88  E-value=0.014  Score=57.95  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=33.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE  136 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E  136 (330)
                      ..|+|+|.++||||||.+.|....+  -....|.||+.|..|-
T Consensus        22 ~kvgIVG~PNvGKSTLfnaLt~~~~--~v~n~pftTi~p~~g~   62 (390)
T PTZ00258         22 LKMGIVGLPNVGKSTTFNALCKQQV--PAENFPFCTIDPNTAR   62 (390)
T ss_pred             cEEEEECCCCCChHHHHHHHhcCcc--cccCCCCCcccceEEE
Confidence            4799999999999999999976654  3445689999988774

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=95.88  E-value=0.01  Score=57.91  Aligned_cols=27  Identities=15%  Similarity=0.183  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||||+|||||++.|....+
T Consensus        30 ~Gei~gIiG~sGaGKSTLlr~I~gl~~   56 (343)
T TIGR02314        30 AGQIYGVIGASGAGKSTLIRCVNLLER   56 (343)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            567999999999999999998876643

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=95.87  E-value=0.032  Score=56.69  Aligned_cols=55  Identities=24%  Similarity=0.370  Sum_probs=36.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDE  149 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~  149 (330)
                      +.|+|+|.+|||||||.++|+.... ......+.+||....+  +.+|..+.+++..-
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G   95 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRRE-AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGG   95 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCc-ccccCCCCCCEeeEEEEEEECCcEEEEEeCCC
Confidence            5699999999999999999986532 1234455667654333  34566666665533

>PRK15453 phosphoribulokinase; Provisional

Probab=95.87  E-value=0.0085  Score=56.91  Aligned_cols=26  Identities=19%  Similarity=0.439  Sum_probs=22.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +..|+|.|.|||||||+++.|.+.+.
T Consensus         5 ~piI~ItG~SGsGKTTva~~l~~if~   30 (290)
T PRK15453          5 HPIIAVTGSSGAGTTTVKRAFEKIFR   30 (290)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999987654

>KOG3877|consensus

Probab=95.87  E-value=0.019  Score=54.27  Aligned_cols=116  Identities=18%  Similarity=0.312  Sum_probs=65.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCC----cccc---ccccccCCCCc--ccCCeeEEEeccc------------chh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDK----YAYP---VPHTTRSPRSD--EENGRAYYFISHD------------EMM  151 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~----f~~~---v~~TTR~pr~~--E~~G~dy~fvs~~------------~f~  151 (330)
                      -+.|++-||-|+||++|++.|++...-.    |..-   +.-++-..|.-  ..++ .+..-+.+            .|.
T Consensus        71 SkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~-~cr~~di~~Fy~dPS~dlsa~~Q  149 (393)
T KOG3877|consen   71 SKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPA-RCRLPDISMFYKDPSGDLSAAMQ  149 (393)
T ss_pred             ceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCc-ccCchhHHHhccCCCccHHHHHH
Confidence            4799999999999999999999874211    1111   11111111110  0000 01100111            122


Q ss_pred             hHHhccceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHH----HHHHHhcC---------------------CCC
Q psy933          152 SDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQA----LKILRTGE---------------------FSP  206 (330)
Q Consensus       152 ~~i~~~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~----v~~L~~~~---------------------~~p  206 (330)
                      ..+-.-.|..|           .++++.++..|+-+||+-+|.+    +..++..+                     +.|
T Consensus       150 ~r~y~~R~~QY-----------~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~P  218 (393)
T KOG3877|consen  150 DRIYNCRFDQY-----------LDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWP  218 (393)
T ss_pred             HHHHHhHHHHH-----------HHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCc
Confidence            22333334433           7889999999999999988765    34443322                     345


Q ss_pred             E-EEEEccCcccccc
Q psy933          207 F-VVFIAAPQLQNLS  220 (330)
Q Consensus       207 ~-vIfI~pps~~~l~  220 (330)
                      . ||||..|-.+.++
T Consensus       219 HLViYld~Pv~~v~~  233 (393)
T KOG3877|consen  219 HLVIYLDTPVNKVLE  233 (393)
T ss_pred             cEEEEEcCCcHHHHH
Confidence            4 8999998655543

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.86  E-value=0.0062  Score=52.37  Aligned_cols=21  Identities=19%  Similarity=0.488  Sum_probs=18.0

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+|++|+|||||++.|.+.
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            899999999999999999987

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=95.86  E-value=0.0079  Score=53.90  Aligned_cols=27  Identities=22%  Similarity=0.331  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999987654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=95.86  E-value=0.092  Score=56.12  Aligned_cols=56  Identities=18%  Similarity=0.293  Sum_probs=37.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDE  149 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~  149 (330)
                      .+.|+|+|.++||||||.++|..... .+....|.+||..-.+  +.+|..+.+++..-
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G  332 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGG  332 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCC
Confidence            36799999999999999999986532 2334456677754332  34566666665543

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.85  E-value=0.0081  Score=51.00  Aligned_cols=27  Identities=15%  Similarity=0.396  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGELE   51 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            567999999999999999998876654

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.85  E-value=0.0082  Score=52.30  Aligned_cols=27  Identities=22%  Similarity=0.461  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLLK   51 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999887654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=95.85  E-value=0.0078  Score=55.97  Aligned_cols=27  Identities=30%  Similarity=0.548  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGFVP   52 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999987654

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=95.85  E-value=0.0069  Score=54.13  Aligned_cols=24  Identities=17%  Similarity=0.349  Sum_probs=21.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +|+|.|+||||||||++.|.+..+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~   24 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP   24 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999998864

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=95.84  E-value=0.008  Score=54.95  Aligned_cols=27  Identities=22%  Similarity=0.432  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLYV   52 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            567999999999999999999986654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.84  E-value=0.0085  Score=51.84  Aligned_cols=27  Identities=22%  Similarity=0.482  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999998886543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=95.84  E-value=0.0071  Score=51.18  Aligned_cols=22  Identities=32%  Similarity=0.647  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~   23 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQG   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999854

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=95.83  E-value=0.0083  Score=54.41  Aligned_cols=27  Identities=22%  Similarity=0.396  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   61 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGLDD   61 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            568999999999999999999987654

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=95.83  E-value=0.0072  Score=54.17  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=22.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      + .++|+||+|+|||||++.|....+
T Consensus        26 g-~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          26 G-MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             C-cEEEECCCCCCHHHHHHHHhCCCC
Confidence            5 899999999999999999986654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=95.83  E-value=0.0081  Score=55.02  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLER   53 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            567999999999999999999987654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13796 GTPase YqeH; Provisional

Probab=95.83  E-value=0.0077  Score=59.22  Aligned_cols=43  Identities=19%  Similarity=0.284  Sum_probs=32.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC---C-ccccccccccCCCCc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD---K-YAYPVPHTTRSPRSD  135 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~---~-f~~~v~~TTR~pr~~  135 (330)
                      ++.+.++|.+|||||||+|+|+.....   . -....|+|||..-.-
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~  206 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEI  206 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEE
Confidence            467899999999999999999975421   1 245688999976443

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.83  E-value=0.0082  Score=54.75  Aligned_cols=27  Identities=15%  Similarity=0.300  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGLDT   60 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467999999999999999999987653

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=95.82  E-value=0.0093  Score=51.96  Aligned_cols=27  Identities=15%  Similarity=0.474  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|+...+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            467999999999999999999987654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=95.82  E-value=0.0099  Score=58.20  Aligned_cols=27  Identities=22%  Similarity=0.359  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||||+|||||.+.|+-..+
T Consensus        29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~   55 (353)
T TIGR03265        29 KGEFVCLLGPSGCGKTTLLRIIAGLER   55 (353)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence            467999999999999999999987654

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=95.82  E-value=0.01  Score=49.86  Aligned_cols=22  Identities=36%  Similarity=0.601  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .++++|++|||||||++.|...
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~  106 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGK  106 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999854

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=95.82  E-value=0.0077  Score=54.66  Aligned_cols=27  Identities=15%  Similarity=0.487  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          32 SGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            457999999999999999998886654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10908 cell division protein FtsE; Provisional

Probab=95.82  E-value=0.0084  Score=54.23  Aligned_cols=27  Identities=15%  Similarity=0.213  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGIER   53 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            568999999999999999999987654

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=95.80  E-value=0.0087  Score=54.76  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=20.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~  115 (330)
                      .+..++|+||+|+|||||++.|.-
T Consensus        22 ~~~~~~i~GpNGsGKStll~ai~~   45 (243)
T cd03272          22 SPKHNVVVGRNGSGKSNFFAAIRF   45 (243)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998863

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.80  E-value=0.0082  Score=54.52  Aligned_cols=27  Identities=33%  Similarity=0.646  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999887654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=95.80  E-value=0.0086  Score=54.29  Aligned_cols=27  Identities=22%  Similarity=0.517  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|+...+
T Consensus        28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   54 (229)
T cd03254          28 PGETVAIVGPTGAGKTTLINLLMRFYD   54 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            467899999999999999999987654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.79  E-value=0.0089  Score=53.64  Aligned_cols=27  Identities=26%  Similarity=0.527  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGLLP   53 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            568999999999999999999987654

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=95.79  E-value=0.0086  Score=53.27  Aligned_cols=25  Identities=36%  Similarity=0.667  Sum_probs=19.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      +++.|+|+||+|+|||+|-.+|...
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~   26 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNG   26 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHS
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcC
Confidence            3578999999999999999999875

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.79  E-value=0.011  Score=55.98  Aligned_cols=27  Identities=19%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~~   58 (287)
T PRK13637         32 DGEFVGLIGHTGSGKSTLIQHLNGLLK   58 (287)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            568999999999999999999987654

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=95.79  E-value=0.0087  Score=54.91  Aligned_cols=27  Identities=26%  Similarity=0.413  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (242)
T cd03295          26 KGEFLVLIGPSGSGKTTTMKMINRLIE   52 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            567999999999999999999987654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01870 RhoA_like RhoA-like subfamily

Probab=95.79  E-value=0.0082  Score=51.41  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      +-|+|+|++|||||+|+++|...
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~   24 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKD   24 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999864

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=95.79  E-value=0.077  Score=42.44  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=18.2

Q ss_pred             EEcCCCccHHHHHHHHHhhCC
Q psy933           98 LLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        98 LvGpsGvGKstL~~~L~~~~p  118 (330)
                      |+|++|+|||||+++|.....
T Consensus         1 iiG~~~~GKStl~~~l~~~~~   21 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEF   21 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCc
Confidence            589999999999999986543

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=95.79  E-value=0.0086  Score=53.88  Aligned_cols=27  Identities=22%  Similarity=0.330  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGLLE   56 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            457999999999999999999987654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=95.78  E-value=0.0093  Score=53.45  Aligned_cols=27  Identities=15%  Similarity=0.299  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|+...+
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~   49 (211)
T cd03298          23 QGEITAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            567999999999999999999987654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.78  E-value=0.0086  Score=54.40  Aligned_cols=27  Identities=19%  Similarity=0.359  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLVK   51 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457999999999999999999986643

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd04158 ARD1 ARD1 subfamily

Probab=95.78  E-value=0.011  Score=50.93  Aligned_cols=21  Identities=33%  Similarity=0.496  Sum_probs=19.3

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+|++|||||||+++|...
T Consensus         2 vvlvG~~~~GKTsl~~~l~~~   22 (169)
T cd04158           2 VVTLGLDGAGKTTILFKLKQD   22 (169)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999864

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.78  E-value=0.0067  Score=59.85  Aligned_cols=26  Identities=23%  Similarity=0.501  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..++|+||+||||||++.+|+..+
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999998764

>cd04140 ARHI_like ARHI subfamily

Probab=95.77  E-value=0.0095  Score=50.83  Aligned_cols=22  Identities=27%  Similarity=0.576  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||+|.+++...
T Consensus         3 kv~~vG~~~vGKTsli~~~~~~   24 (165)
T cd04140           3 RVVVFGAGGVGKSSLVLRFVKG   24 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999999854

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.77  E-value=0.0075  Score=59.70  Aligned_cols=27  Identities=22%  Similarity=0.581  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +++.|+|+||+||||||-..+|+..+-
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~  228 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYV  228 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence            479999999999999998888988764

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=95.77  E-value=0.0089  Score=53.44  Aligned_cols=27  Identities=19%  Similarity=0.391  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            467999999999999999999986654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=95.77  E-value=0.0091  Score=53.08  Aligned_cols=27  Identities=19%  Similarity=0.409  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999887654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.76  E-value=0.0093  Score=52.94  Aligned_cols=27  Identities=15%  Similarity=0.302  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|+...+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467999999999999999999987654

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.76  E-value=0.0098  Score=53.01  Aligned_cols=27  Identities=19%  Similarity=0.324  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   52 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            567999999999999999998886653

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=95.76  E-value=0.0099  Score=54.98  Aligned_cols=26  Identities=15%  Similarity=0.468  Sum_probs=22.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ...++|+||+|+|||||++.+....+
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            34799999999999999999988765

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=95.75  E-value=0.0098  Score=51.62  Aligned_cols=27  Identities=22%  Similarity=0.511  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            567999999999999999999987654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=95.75  E-value=0.015  Score=59.72  Aligned_cols=27  Identities=30%  Similarity=0.549  Sum_probs=24.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+.++.|+|+||||||||++.|+...+
T Consensus       316 ~GE~lglVGeSGsGKSTlar~i~gL~~  342 (539)
T COG1123         316 EGETLGLVGESGSGKSTLARILAGLLP  342 (539)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            568999999999999999999987765

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.75  E-value=0.0068  Score=58.32  Aligned_cols=95  Identities=17%  Similarity=0.355  Sum_probs=54.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccc-hhhHHhccceeeEEeecCcccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDE-MMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~-f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      +.-|.|+||+|||||-|++.|++...  ..+++...|---..    |  |.--+.+. +.+.+++-+|=--.--+|--| 
T Consensus        97 KSNILLiGPTGsGKTlLAqTLAk~Ln--VPFaiADATtLTEA----G--YVGEDVENillkLlqaadydV~rAerGIIy-  167 (408)
T COG1219          97 KSNILLIGPTGSGKTLLAQTLAKILN--VPFAIADATTLTEA----G--YVGEDVENILLKLLQAADYDVERAERGIIY-  167 (408)
T ss_pred             eccEEEECCCCCcHHHHHHHHHHHhC--CCeeeccccchhhc----c--ccchhHHHHHHHHHHHcccCHHHHhCCeEE-
Confidence            35799999999999999999998764  23333322221111    2  33333343 334444444422222234444 


Q ss_pred             ccHHHHHHHHHhCCe--EEEEeCHHHHHH
Q psy933          172 TKLETIRRIHQEGKI--AILDVEPQALKI  198 (330)
Q Consensus       172 ts~~~i~~v~~~gk~--~vldv~~~~v~~  198 (330)
                        ++.|+++..+...  .--|++.+|+++
T Consensus       168 --IDEIDKIarkSeN~SITRDVSGEGVQQ  194 (408)
T COG1219         168 --IDEIDKIARKSENPSITRDVSGEGVQQ  194 (408)
T ss_pred             --EechhhhhccCCCCCcccccCchHHHH
Confidence              5677777766433  335899999876

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.75  E-value=0.0057  Score=55.59  Aligned_cols=32  Identities=16%  Similarity=0.307  Sum_probs=26.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPV  125 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v  125 (330)
                      +.|+|.|++||||||+++.|++...+.....+
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi   33 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVI   33 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhcc
Confidence            57999999999999999999988766544443

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=95.74  E-value=0.0098  Score=52.16  Aligned_cols=27  Identities=22%  Similarity=0.433  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~~   50 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLLK   50 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            567999999999999999998886553

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=95.74  E-value=0.0093  Score=54.65  Aligned_cols=27  Identities=33%  Similarity=0.405  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLLEM   53 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999986643

>cd04149 Arf6 Arf6 subfamily

Probab=95.73  E-value=0.032  Score=48.13  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHh
Q psy933           95 TLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~  115 (330)
                      -|+|+|++|||||+|+++|..
T Consensus        11 kv~i~G~~~~GKTsli~~l~~   31 (168)
T cd04149          11 RILMLGLDAAGKTTILYKLKL   31 (168)
T ss_pred             EEEEECcCCCCHHHHHHHHcc
Confidence            589999999999999999964

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.73  E-value=0.067  Score=56.20  Aligned_cols=24  Identities=21%  Similarity=0.546  Sum_probs=21.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..++|.||.|+||||+++.|++..
T Consensus        39 ha~Lf~Gp~GvGKTtlAr~lAk~L   62 (618)
T PRK14951         39 HAYLFTGTRGVGKTTVSRILAKSL   62 (618)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            467999999999999999998764

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=95.73  E-value=0.012  Score=57.13  Aligned_cols=27  Identities=22%  Similarity=0.447  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+|+||+|||||++.|+...+
T Consensus        46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl~~   72 (331)
T PRK15079         46 EGETLGVVGESGCGKSTFARAIIGLVK   72 (331)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence            568999999999999999999987654

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.73  E-value=0.062  Score=56.57  Aligned_cols=24  Identities=21%  Similarity=0.542  Sum_probs=21.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..++|.||.|+||||+++.|.+..
T Consensus        39 HA~LFtGP~GvGKTTLAriLAkaL   62 (700)
T PRK12323         39 HAYLFTGTRGVGKTTLSRILAKSL   62 (700)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998875

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=95.73  E-value=0.011  Score=58.87  Aligned_cols=27  Identities=19%  Similarity=0.385  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        53 ~Gei~~LvG~NGsGKSTLLr~I~Gl~~   79 (400)
T PRK10070         53 EGEIFVIMGLSGSGKSTMVRLLNRLIE   79 (400)
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            567999999999999999999987654

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.72  E-value=0.0096  Score=53.22  Aligned_cols=27  Identities=15%  Similarity=0.263  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|+...+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   52 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGLAR   52 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            567999999999999999999987654

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=95.72  E-value=0.0097  Score=54.09  Aligned_cols=27  Identities=11%  Similarity=0.286  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|+...+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASLIS   58 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            567999999999999999999887643

>cd04136 Rap_like Rap-like subfamily

Probab=95.72  E-value=0.0098  Score=50.07  Aligned_cols=22  Identities=27%  Similarity=0.623  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++++..
T Consensus         3 ki~i~G~~~vGKTsl~~~~~~~   24 (163)
T cd04136           3 KVVVLGSGGVGKSALTVQFVQG   24 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999999854

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=95.72  E-value=0.0092  Score=56.37  Aligned_cols=28  Identities=14%  Similarity=0.521  Sum_probs=24.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      .++|++|+||+|+|||.+++.+++..+.
T Consensus        32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~   59 (272)
T PF12775_consen   32 NGRPVLLVGPSGTGKTSLIQNFLSSLDS   59 (272)
T ss_dssp             CTEEEEEESSTTSSHHHHHHHHHHCSTT
T ss_pred             cCCcEEEECCCCCchhHHHHhhhccCCc
Confidence            5689999999999999999888876543

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.71  E-value=0.018  Score=51.16  Aligned_cols=27  Identities=19%  Similarity=0.336  Sum_probs=22.6

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..+..|.|+||||+|||||.--|+-..
T Consensus        34 ~~Ge~vaiVG~SGSGKSTLl~vlAGLd   60 (228)
T COG4181          34 KRGETVAIVGPSGSGKSTLLAVLAGLD   60 (228)
T ss_pred             cCCceEEEEcCCCCcHHhHHHHHhcCC
Confidence            356789999999999999999887543

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.71  E-value=0.063  Score=58.30  Aligned_cols=25  Identities=16%  Similarity=0.452  Sum_probs=22.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..++|.||+|+||||+++.|++...
T Consensus        39 HAyLFtGPpGtGKTTLARiLAk~Ln   63 (944)
T PRK14949         39 HAYLFTGTRGVGKTSLARLFAKGLN   63 (944)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcc
Confidence            4678999999999999999998764

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.71  E-value=0.0098  Score=52.26  Aligned_cols=27  Identities=19%  Similarity=0.335  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999887654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.71  E-value=0.01  Score=51.82  Aligned_cols=27  Identities=22%  Similarity=0.479  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            467999999999999999999987654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=95.71  E-value=0.01  Score=58.15  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=34.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC----CccccccccccCCCCccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD----KYAYPVPHTTRSPRSDEE  137 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~----~f~~~v~~TTR~pr~~E~  137 (330)
                      ++.++|+|.+|||||||.|.|++....    --....|+||+.+...+.
T Consensus       154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~  202 (360)
T TIGR03597       154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL  202 (360)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe
Confidence            468999999999999999999986431    134457889987765554

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=95.70  E-value=0.0096  Score=54.53  Aligned_cols=27  Identities=22%  Similarity=0.431  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   54 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGIVP   54 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            568999999999999999999987654

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.70  E-value=0.0089  Score=52.53  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=21.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+.|+||||||||.|++.|.+..-
T Consensus         5 ~~ll~GpsGvGKT~la~~la~~l~   28 (171)
T PF07724_consen    5 NFLLAGPSGVGKTELAKALAELLF   28 (171)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            688999999999999999998753

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.70  E-value=0.0094  Score=52.87  Aligned_cols=25  Identities=20%  Similarity=0.453  Sum_probs=22.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .+..++|+||+|+|||||.+.|...
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4679999999999999999988754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01862 Rab7 Rab7 subfamily

Probab=95.69  E-value=0.0082  Score=51.00  Aligned_cols=22  Identities=36%  Similarity=0.789  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=95.69  E-value=0.01  Score=54.25  Aligned_cols=27  Identities=19%  Similarity=0.361  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   36 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGLAQ   36 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999987654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=95.69  E-value=0.0084  Score=52.90  Aligned_cols=24  Identities=21%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|.|.|+||||||||++.|.+...
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~   24 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLR   24 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999998753

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=95.68  E-value=0.01  Score=53.47  Aligned_cols=27  Identities=15%  Similarity=0.396  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~i~G~~~   55 (220)
T cd03245          29 AGEKVAIIGRVGSGKSTLLKLLAGLYK   55 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            467999999999999999999987654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.68  E-value=0.012  Score=55.75  Aligned_cols=27  Identities=15%  Similarity=0.336  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (290)
T PRK13634         32 SGSYVAIIGHTGSGKSTLLQHLNGLLQ   58 (290)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            568999999999999999999987654

>PRK07667 uridine kinase; Provisional

Probab=95.68  E-value=0.0094  Score=53.11  Aligned_cols=26  Identities=19%  Similarity=0.212  Sum_probs=22.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +..|.|.|++|+||||+++.|.+...
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~l~   42 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKENMK   42 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36889999999999999999988754

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=95.68  E-value=0.052  Score=47.82  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +|.|.|..|||+++|+++|++...
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg   24 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLG   24 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT
T ss_pred             CEEECCCCCCChHHHHHHHHHHcC
Confidence            488999999999999999999874

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=95.67  E-value=0.01  Score=55.45  Aligned_cols=27  Identities=15%  Similarity=0.273  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~   63 (257)
T PRK11247         37 AGQFVAVVGRSGCGKSTLLRLLAGLET   63 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            567999999999999999999987654

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=95.67  E-value=0.013  Score=61.50  Aligned_cols=46  Identities=26%  Similarity=0.485  Sum_probs=34.6

Q ss_pred             ccCceeeeccc-CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCcccc
Q psy933           79 LVTYEEVVKLP-SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYP  124 (330)
Q Consensus        79 ~~~Ye~V~~~~-~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~  124 (330)
                      ++-|=-|.++. .-.+++++|+||+|||||+|.+-+++....+|...
T Consensus       335 IlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~  381 (782)
T COG0466         335 ILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI  381 (782)
T ss_pred             HHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence            44565565554 34668999999999999999999998876666443

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=95.67  E-value=0.01  Score=54.12  Aligned_cols=27  Identities=22%  Similarity=0.491  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   37 (230)
T TIGR02770        11 RGEVLALVGESGSGKSLTCLAILGLLP   37 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467999999999999999999987654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=95.67  E-value=0.01  Score=54.61  Aligned_cols=27  Identities=11%  Similarity=0.242  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   54 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLLEQ   54 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467999999999999999999886653

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=95.67  E-value=0.0093  Score=59.47  Aligned_cols=27  Identities=15%  Similarity=0.385  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        28 ~Geiv~liGpNGaGKSTLLk~LaGll~   54 (402)
T PRK09536         28 EGSLVGLVGPNGAGKTTLLRAINGTLT   54 (402)
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            568999999999999999999987654

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.67  E-value=0.01  Score=54.50  Aligned_cols=27  Identities=11%  Similarity=0.278  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRLID   54 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999987653

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=95.66  E-value=0.013  Score=49.87  Aligned_cols=22  Identities=27%  Similarity=0.576  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+++|++|||||+|.++|...
T Consensus         4 ki~i~G~~~vGKSsli~~~~~~   25 (166)
T cd01869           4 KLLLIGDSGVGKSCLLLRFADD   25 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999999854

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=95.66  E-value=0.0066  Score=51.56  Aligned_cols=20  Identities=25%  Similarity=0.606  Sum_probs=18.7

Q ss_pred             EEcCCCccHHHHHHHHHhhC
Q psy933           98 LLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        98 LvGpsGvGKstL~~~L~~~~  117 (330)
                      |+||+||||+|++++|++.+
T Consensus         1 i~G~PgsGK~t~~~~la~~~   20 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRY   20 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhc
Confidence            68999999999999999876

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.66  E-value=0.01  Score=56.19  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   62 (289)
T PRK13645         36 KNKVTCVIGTTGSGKSTMIQLTNGLII   62 (289)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467999999999999999999987764

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=95.66  E-value=0.01  Score=54.78  Aligned_cols=27  Identities=19%  Similarity=0.432  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   54 (253)
T TIGR02323        28 PGEVLGIVGESGSGKSTLLGCLAGRLA   54 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999887654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=95.65  E-value=0.013  Score=57.13  Aligned_cols=28  Identities=21%  Similarity=0.405  Sum_probs=24.4

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..++|+||+|+|||||++.|....+
T Consensus        65 ~~Gei~gLlGpNGaGKSTLl~~L~Gl~~   92 (340)
T PRK13536         65 ASGECFGLLGPNGAGKSTIARMILGMTS   92 (340)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            3568999999999999999999987654

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=95.64  E-value=0.01  Score=54.29  Aligned_cols=25  Identities=20%  Similarity=0.512  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .+..++|+||+|+|||||.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        25 KGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4679999999999999999998865

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>CHL00195 ycf46 Ycf46; Provisional

Probab=95.63  E-value=0.019  Score=58.70  Aligned_cols=26  Identities=23%  Similarity=0.558  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .++.|+|.||+|+|||.+++.++...
T Consensus       258 ~pkGILL~GPpGTGKTllAkaiA~e~  283 (489)
T CHL00195        258 TPRGLLLVGIQGTGKSLTAKAIANDW  283 (489)
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHh
Confidence            45789999999999999999998875

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.63  E-value=0.011  Score=51.91  Aligned_cols=25  Identities=36%  Similarity=0.535  Sum_probs=21.1

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHH
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLI  114 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~  114 (330)
                      +..+.++||+||||+|||+|.+-|.
T Consensus        25 ~~~getlvllgpsgagkssllr~ln   49 (242)
T COG4161          25 CPEGETLVLLGPSGAGKSSLLRVLN   49 (242)
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHH
Confidence            3356799999999999999998764

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=95.63  E-value=0.011  Score=50.18  Aligned_cols=25  Identities=20%  Similarity=0.461  Sum_probs=21.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +.|.++||+|+|||||+..|++...
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~   25 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELK   25 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3688999999999999999988754

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.63  E-value=0.011  Score=54.63  Aligned_cols=27  Identities=19%  Similarity=0.422  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   55 (253)
T PRK14267         29 QNGVFALMGPSGCGKSTLLRTFNRLLE   55 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            467999999999999999999887643

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.63  E-value=0.0098  Score=53.25  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          32 PGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            457999999999999999998886653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=95.63  E-value=0.36  Score=41.69  Aligned_cols=22  Identities=36%  Similarity=0.720  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+++|.+|||||+|+++++..
T Consensus         4 ki~vvG~~~vGKTsL~~~~~~~   25 (172)
T cd04141           4 KIVMLGAGGVGKSAVTMQFISH   25 (172)
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            4889999999999999999853

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.63  E-value=0.0097  Score=54.92  Aligned_cols=27  Identities=22%  Similarity=0.527  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (255)
T PRK11300         30 EQEIVSLIGPNGAGKTTVFNCLTGFYK   56 (255)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence            567999999999999999999987654

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=95.62  E-value=0.011  Score=54.67  Aligned_cols=26  Identities=19%  Similarity=0.344  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..++|+||+|+|||||.+.|....
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         31 QNQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            46799999999999999999998653

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=95.61  E-value=0.011  Score=53.10  Aligned_cols=27  Identities=15%  Similarity=0.404  Sum_probs=24.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (213)
T TIGR01277        23 DGEIVAIMGPSGAGKSTLLNLIAGFIE   49 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            568999999999999999999987754

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd04113 Rab4 Rab4 subfamily

Probab=95.61  E-value=0.0097  Score=50.25  Aligned_cols=22  Identities=14%  Similarity=0.625  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus         2 ki~v~G~~~vGKTsli~~l~~~   23 (161)
T cd04113           2 KFIIIGSSGTGKSCLLHRFVEN   23 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999854

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=95.60  E-value=0.011  Score=53.90  Aligned_cols=27  Identities=19%  Similarity=0.470  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGFLT   50 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            567999999999999999999987654

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=95.59  E-value=0.01  Score=55.32  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T PRK10575         36 AGKVTGLIGHNGSGKSTLLKMLGRHQP   62 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            567999999999999999999887654

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=95.59  E-value=0.011  Score=55.29  Aligned_cols=27  Identities=15%  Similarity=0.379  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~   75 (269)
T cd03294          49 EGEIFVIMGLSGSGKSTLLRCINRLIE   75 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            567999999999999999999987654

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=95.59  E-value=0.011  Score=54.03  Aligned_cols=27  Identities=15%  Similarity=0.352  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   52 (240)
T PRK09493         26 QGEVVVIIGPSGSGKSTLLRCINKLEE   52 (240)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            567999999999999999999987654

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=95.59  E-value=0.012  Score=54.27  Aligned_cols=27  Identities=22%  Similarity=0.390  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (247)
T TIGR00972        26 KNQVTALIGPSGCGKSTLLRSLNRMND   52 (247)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            567999999999999999999986653

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=95.59  E-value=0.0095  Score=56.46  Aligned_cols=26  Identities=27%  Similarity=0.554  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .++.|+|+||+||||||++.+|+..+
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998765

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=95.59  E-value=0.012  Score=53.31  Aligned_cols=27  Identities=19%  Similarity=0.432  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   59 (224)
T TIGR02324        33 AGECVALSGPSGAGKSTLLKSLYANYL   59 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            567999999999999999999987754

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.57  E-value=0.012  Score=54.48  Aligned_cols=27  Identities=26%  Similarity=0.356  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (254)
T PRK14273         32 KNSITALIGPSGCGKSTFLRTLNRMND   58 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            568999999999999999999987654

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=95.57  E-value=0.011  Score=55.34  Aligned_cols=27  Identities=19%  Similarity=0.348  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   58 (272)
T PRK15056         32 GGSIAALVGVNGSGKSTLFKALMGFVR   58 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999887643

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=95.56  E-value=0.021  Score=54.75  Aligned_cols=28  Identities=25%  Similarity=0.680  Sum_probs=25.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      .+..++|+||+|+|||||++.|+...|.
T Consensus       143 ~~~~ili~G~tGsGKTTll~al~~~~~~  170 (308)
T TIGR02788       143 SRKNIIISGGTGSGKTTFLKSLVDEIPK  170 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccCCc
Confidence            4679999999999999999999988774

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.56  E-value=0.03  Score=48.94  Aligned_cols=101  Identities=14%  Similarity=0.282  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      |++..++.||.||||||+-.-+....-                    + ...||+.+++-..+....--+.. +   --|
T Consensus         1 m~~l~IvaG~NGsGKstv~~~~~~~~~--------------------~-~~~~VN~D~iA~~i~p~~p~~~~-i---~A~   55 (187)
T COG4185           1 MKRLDIVAGPNGSGKSTVYASTLAPLL--------------------P-GIVFVNADEIAAQISPDNPTSAA-I---QAA   55 (187)
T ss_pred             CceEEEEecCCCCCceeeeeccchhhc--------------------C-CeEEECHHHHhhhcCCCCchHHH-H---HHH
Confidence            356788899999999997653322111                    1 23456655554333211100000 0   000


Q ss_pred             -ccHHHHHHHHHhCCeEEEEeCHHH------HHHHHhcCCCCEEEEEccCccc
Q psy933          172 -TKLETIRRIHQEGKIAILDVEPQA------LKILRTGEFSPFVVFIAAPQLQ  217 (330)
Q Consensus       172 -ts~~~i~~v~~~gk~~vldv~~~~------v~~L~~~~~~p~vIfI~pps~~  217 (330)
                       .-..-+...+..|+...++....+      ++.-+..++.....|+-.++.+
T Consensus        56 r~ai~~i~~~I~~~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~e  108 (187)
T COG4185          56 RVAIDRIARLIDLGRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVE  108 (187)
T ss_pred             HHHHHHHHHHHHcCCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHH
Confidence             113334555677777777665444      3444456777777777777654

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=95.55  E-value=0.012  Score=53.48  Aligned_cols=27  Identities=30%  Similarity=0.599  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   31 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGLIP   31 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999987654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=95.55  E-value=0.012  Score=54.40  Aligned_cols=27  Identities=26%  Similarity=0.493  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (252)
T TIGR03005        25 AGEKVALIGPSGSGKSTILRILMTLEP   51 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            567999999999999999999986653

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.55  E-value=0.012  Score=54.18  Aligned_cols=27  Identities=15%  Similarity=0.321  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14247         28 DNTITALMGPSGSGKSTLLRVFNRLIE   54 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            467999999999999999999987653

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=95.55  E-value=0.015  Score=49.11  Aligned_cols=26  Identities=19%  Similarity=0.411  Sum_probs=23.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +..|+|.|+.|+|||||++.|++...
T Consensus        22 ~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        22 GTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999998864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.55  E-value=0.013  Score=52.91  Aligned_cols=27  Identities=19%  Similarity=0.406  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   62 (214)
T PRK13543         36 AGEALLVQGDNGAGKTTLLRVLAGLLH   62 (214)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999987654

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=95.54  E-value=0.012  Score=54.91  Aligned_cols=27  Identities=26%  Similarity=0.498  Sum_probs=24.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~   51 (255)
T cd03236          25 EGQVLGLVGPNGIGKSTALKILAGKLK   51 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            567999999999999999999987764

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=95.53  E-value=0.021  Score=51.65  Aligned_cols=27  Identities=22%  Similarity=0.426  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|+...+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (223)
T TIGR03740        25 KNSVYGLLGPNGAGKSTLLKMITGILR   51 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            567999999999999999999987654

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=95.53  E-value=0.008  Score=56.73  Aligned_cols=24  Identities=21%  Similarity=0.506  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|.|+|+|||||||++++|.+.+.
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~   24 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFA   24 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999987654

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=95.53  E-value=0.012  Score=55.44  Aligned_cols=27  Identities=22%  Similarity=0.481  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~laG~~~   52 (272)
T PRK13547         26 PGRVTALLGRNGAGKSTLLKALAGDLT   52 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999987654

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=95.53  E-value=0.012  Score=53.61  Aligned_cols=27  Identities=11%  Similarity=0.329  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (237)
T cd03252          27 PGEVVGIVGRSGSGKSTLTKLIQRFYV   53 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            567999999999999999999987654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.53  E-value=0.011  Score=55.21  Aligned_cols=27  Identities=22%  Similarity=0.289  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (271)
T PRK13638         26 LSPVTGLVGANGCGKSTLFMNLSGLLR   52 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            467999999999999999998886654

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=95.52  E-value=0.011  Score=50.96  Aligned_cols=24  Identities=21%  Similarity=0.523  Sum_probs=21.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ++-|+|+||||+||||++..|++.
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~   37 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR   37 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            468999999999999999999875

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>cd01868 Rab11_like Rab11-like

Probab=95.52  E-value=0.015  Score=49.23  Aligned_cols=22  Identities=27%  Similarity=0.658  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+++|++|||||+|.++|...
T Consensus         5 ki~vvG~~~~GKSsli~~l~~~   26 (165)
T cd01868           5 KIVLIGDSGVGKSNLLSRFTRN   26 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999854

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=95.52  E-value=0.015  Score=55.70  Aligned_cols=27  Identities=22%  Similarity=0.390  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~   58 (306)
T PRK13537         32 RGECFGLLGPNGAGKTTTLRMLLGLTH   58 (306)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467999999999999999999987643

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=95.51  E-value=0.01  Score=47.83  Aligned_cols=23  Identities=17%  Similarity=0.502  Sum_probs=19.7

Q ss_pred             EEEEcCCCccHHHHHHHHHhhCC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      |.|.||+|+|||+|++.|++..-
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            56899999999999999886643

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK12377 putative replication protein; Provisional

Probab=95.51  E-value=0.3  Score=45.52  Aligned_cols=25  Identities=24%  Similarity=0.539  Sum_probs=22.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..++|.||+|+|||.|+..+.....
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~  126 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLL  126 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999987653

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.51  E-value=0.013  Score=54.28  Aligned_cols=26  Identities=19%  Similarity=0.376  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..++|+||+|+|||||++.|....
T Consensus        37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         37 ENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            46799999999999999999998664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	330
1kgd_A	180	Crystal Structure Of The Guanylate Kinase-Like Doma		1e-73
3ney_A	197	Crystal Structure Of The Kinase Domain Of Mpp1P55 L		2e-55
1jxm_A	301	Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Frag		3e-25
1kjw_A	295	Sh3-Guanylate Kinase Module From Psd-95 Length = 29		4e-25
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		1e-24
1lvg_A	198	Crystal Structure Of Mouse Guanylate Kinase In Comp		1e-23
3uat_A	296	Guanylate Kinase Domains Of The Maguk Family Scaffo		2e-23
3tvt_A	292	Structural Basis For Discs Large Interaction With P		4e-23
4f4j_A	202	Conversion Of The Enzyme Guanylate Kinase Into A Mi		2e-19
1gky_A	187	Refined Structure Of The Complex Between Guanylate		2e-18
1ex6_A	186	Crystal Structure Of Unliganded Form Of Guanylate K		2e-18
2j41_A	207	Crystal Structure Of Staphylococcus Aureus Guanylat		6e-12
2qor_A	204	Crystal Structure Of Plasmodium Vivax Guanylate Kin		2e-11
1z6g_A	218	Crystal Structure Of Guanylate Kinase From Plasmodi		1e-10
3tau_A	208	Crystal Structure Of A Putative Guanylate Monophosp		1e-09
1s96_A	219	The 2.0 A X-Ray Structure Of Guanylate Kinase From		9e-09
2an9_A	207	Crystal Structure Of Oligomeric E.Coli Guanylate Ki		3e-08
3lnc_A	231	Crystal Structure Of Guanylate Kinase From Anaplasm		1e-07
1z8f_A	228	Guanylate Kinase Double Mutant A58c, T157c From Myc		2e-06
1znw_A	207	Crystal Structure Of Unliganded Form Of Mycobacteri		2e-06
1s4q_A	228	Crystal Structure Of Guanylate Kinase From Mycobact		2e-06
3tr0_A	205	Structure Of Guanylate Kinase (Gmk) From Coxiella B		4e-06
3lh5_A	251	Crystal Structure Of The Sh3-Guanylate Kinase Core		5e-05
3kfv_A	308	Crystal Structure Of The Sh3-Kinase Fragment Of Tig		8e-05
3tsw_A	391	Crystal Structure Of The Pdz3-Sh3-Guk Core Module O		8e-05
3shw_A	468	Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule		1e-04

>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of Human Cask Length = 180

Iteration: 1
 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 125/176 (71%), Positives = 152/176 (86%)
Query: 90  SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDE 149
           S  RKTLVLLGAHGVGRRHIKNTLI K PD++AYP+PHTTR P+ DEENG+ YYF+SHD+
Sbjct: 2   SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQ 61
Query: 150 MMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVV 209
           MM DI+ N+YLEYG+HEDAMYGTKLETIR+IH++G IAILDVEPQALK+LRT EF+PFVV
Sbjct: 62  MMQDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVV 121
Query: 210 FIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIE 265
           FIAAP +    + D SL++L KESDIL+  Y H+FDLT++NN+I+ETI  LE+A+E
Sbjct: 122 FIAAPTITPGLNEDESLQRLQKESDILQRTYAHYFDLTIINNEIDETIRHLEEAVE 177

>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55 Length = 197

Iteration: 1
 Score =  213 bits (541), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 142/182 (78%), Gaps = 3/182 (1%)
Query: 93  RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMS 152
           RKTLVL+GA GVGR HIKN L+++ P+K+ YPVP+TTR PR  EE+G+ Y+FIS +EM  
Sbjct: 19  RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTR 78
Query: 153 DIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIA 212
           +I+AN++LE+G+++  M+GTK ET+ +IH++ KIAILD+EPQ LKI+RT E SPF+VFIA
Sbjct: 79  NISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIA 138
Query: 213 APQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQ 272
                  ++   +L++L K+S+ ++S Y H+FDL++VNN ++ET+  L++A ++  ++PQ
Sbjct: 139 PTDQGTQTE---ALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQ 195
Query: 273 WI 274
           W+
Sbjct: 196 WV 197

>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of Psd-95 Length = 301

Iteration: 1
 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 133/288 (46%), Gaps = 38/288 (13%)
Query: 1   MFQIISKDDHNWWQARK---DNVAGSAGLIPSP---ELQEWRTACSTIDKTKHEQVNCSI 54
           +  +I   D  WWQAR+   D+     G IPS    E +EW        K K    +   
Sbjct: 36  VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRL-----KAKDWGSSSGS 90
Query: 55  FGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLI 114
            GR                  +  +++YE V ++     + +++LG     +    + L+
Sbjct: 91  QGR------------------EDSVLSYETVTQMEVHYARPIIILGP---TKDRANDDLL 129
Query: 115 NKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-SDIAANQYLEYGTHEDAMYGTK 173
           ++FPDK+   VPHTTR  R  E +GR Y+F+S  E M  DI A++++E G +   +YGT 
Sbjct: 130 SEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTS 189
Query: 174 LETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSL-----EK 228
           ++++R + ++GK  ILDV   A++ L+     P  +FI    L+N+ + +  +      K
Sbjct: 190 VQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARK 249
Query: 229 LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPV 276
               +  L+  +   F   V  +  EE    +++ IE+L     W+P 
Sbjct: 250 AFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPA 297

>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95 Length = 295

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 133/288 (46%), Gaps = 38/288 (13%)
Query: 1   MFQIISKDDHNWWQARK---DNVAGSAGLIPSP---ELQEWRTACSTIDKTKHEQVNCSI 54
           +  +I   D  WWQAR+   D+     G IPS    E +EW        K K    +   
Sbjct: 30  VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRL-----KAKDWGSSSGS 84
Query: 55  FGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLI 114
            GR                  +  +++YE V ++     + +++LG     +    + L+
Sbjct: 85  QGR------------------EDSVLSYETVTQMEVHYARPIIILGP---TKDRANDDLL 123
Query: 115 NKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-SDIAANQYLEYGTHEDAMYGTK 173
           ++FPDK+   VPHTTR  R  E +GR Y+F+S  E M  DI A++++E G +   +YGT 
Sbjct: 124 SEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTS 183
Query: 174 LETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSL-----EK 228
           ++++R + ++GK  ILDV   A++ L+     P  +FI    L+N+ + +  +      K
Sbjct: 184 VQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARK 243
Query: 229 LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPV 276
               +  L+  +   F   V  +  EE    +++ IE+L     W+P 
Sbjct: 244 AFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPA 291

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 133/288 (46%), Gaps = 38/288 (13%)
Query: 1   MFQIISKDDHNWWQARK---DNVAGSAGLIPSP---ELQEWRTACSTIDKTKHEQVNCSI 54
           +  +I   D  WWQAR+   D+     G IPS    E +EW        K K    +   
Sbjct: 456 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRL-----KAKDWGSSSGS 510
Query: 55  FGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLI 114
            GR                  +  +++YE V ++     + +++LG     +    + L+
Sbjct: 511 QGR------------------EDSVLSYETVTQMEVHYARPIIILGPT---KDRANDDLL 549
Query: 115 NKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-SDIAANQYLEYGTHEDAMYGTK 173
           ++FPDK+   VPHTTR  R  E +GR Y+F+S  E M  DI A++++E G +   +YGT 
Sbjct: 550 SEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTS 609
Query: 174 LETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSL-----EK 228
           ++++R + ++GK  ILDV   A++ L+     P  +FI    L+N+ + +  +      K
Sbjct: 610 VQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARK 669
Query: 229 LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPV 276
               +  L+  +   F   V  +  EE    +++ IE+L     W+P 
Sbjct: 670 AFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPA 717

>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex With Gmp And Adp Length = 198

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 97/183 (53%), Gaps = 10/183 (5%)
Query: 94  KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153
           + +VL G  G G+  +   L  +    + + V HTTR+PR  EE+G+ YYF++ + M  D
Sbjct: 5   RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64
Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAA 213
           IAA  ++E+      +YGT  E +R +    +I +LDV+ Q ++ ++  +  P  +F+  
Sbjct: 65  IAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQP 124
Query: 214 PQLQNL--------SDYDGSLEK--LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKA 263
           P L  L        ++ + SL K   A  +D+  S     FDL ++N+D+++    L++A
Sbjct: 125 PSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQA 184
Query: 264 IEE 266
           + E
Sbjct: 185 LSE 187

>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold Proteins As Specific Phospho-Protein Binding Modules Length = 296

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 135/285 (47%), Gaps = 41/285 (14%)
Query: 1   MFQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGR 57
           +  +I+  D  WWQAR+   D  +   G+IPS            ++K +  ++    F  
Sbjct: 40  ILHVINASDDEWWQARQVTPDGESDEVGVIPSKR---------RVEKKERARLKTVKFNS 90
Query: 58  XXXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKF 117
                                +++YE V +      + +++LG     +  + + LI++F
Sbjct: 91  K--------------------VLSYEPVNQQEVNYTRPVIILGPM---KDRVNDDLISEF 127
Query: 118 PDKYAYPVPHTTRSPRSDEENGRAYYFI-SHDEMMSDIAANQYLEYGTHEDAMYGTKLET 176
           PDK+   VPHTTR  R  E +GR Y+F+ S ++M  DI  ++++E G + + +YGT +++
Sbjct: 128 PDKFGSCVPHTTRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSVQS 187
Query: 177 IRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSL-----EKLAK 231
           +R + ++GK  ILDV   A+K L+  +  P  +FI    ++N+ + +  L      K  +
Sbjct: 188 VRAVAEKGKHCILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEMNKRLTDEQARKTFE 247
Query: 232 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPV 276
            +  L+  +   F   V  + +E+    +++ IEE      W+P 
Sbjct: 248 RAVRLEQEFTEHFTAIVQGDTLEDIYNQVKQIIEEQSGPYIWVPA 292

>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins Length = 292

Iteration: 1
 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 130/284 (45%), Gaps = 41/284 (14%)
Query: 1   MFQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGR 57
           +  + +  D  WWQAR+   DN     G++PS   + W       D++   + N      
Sbjct: 34  ILHVTNASDDEWWQARRVLGDNEDEQIGIVPSK--RRWERKMRARDRSVKSEEN------ 85
Query: 58  XXXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKF 117
                                +++YE V +L     + +++LG     +  I + LI+++
Sbjct: 86  ---------------------VLSYEAVQRLSINYTRPVIILGPL---KDRINDDLISEY 121
Query: 118 PDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-SDIAANQYLEYGTHEDAMYGTKLET 176
           PDK+   VPHTTR  R  E +GR Y+F+S  E M  DI  + ++E G + D +YGT + +
Sbjct: 122 PDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVAS 181
Query: 177 IRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSL-----EKLAK 231
           +R + ++GK  ILDV   A+K L+  +  P  VFI    + ++ + +  +     +K  +
Sbjct: 182 VREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYE 241
Query: 232 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIP 275
            +  ++  +  +F   V  + IEE    ++  I        W+P
Sbjct: 242 RAIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVP 285

>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic Spindle Orienting Protein By A Single Mutation That Inhibits Gmp- Induced Closing Length = 202

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 94  KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153
           + +V+ G  G G+  +   L  ++PD + + VP TTR+PR+ E NG+ Y F+S DE  S 
Sbjct: 18  RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGEVNGKDYNFVSVDEFKSM 77
Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRT-GEFSPFVVFIA 212
           I  N+++E+       YG+ + +++++ + GK  ILD++ Q +K ++   E +   +FIA
Sbjct: 78  IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 137
Query: 213 APQLQNL 219
            P +++L
Sbjct: 138 PPSVEDL 144

>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase And Its Substrate Gmp At 2.0 Angstroms Resolution Length = 187

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 94  KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153
           + +V+ G  G G+  +   L  ++PD + + V  TTR+PR+ E NG+ Y F+S DE  S 
Sbjct: 3   RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 62
Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRT-GEFSPFVVFIA 212
           I  N+++E+       YG+ + +++++ + GK  ILD++ Q +K ++   E +   +FIA
Sbjct: 63  IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 122
Query: 213 APQLQNL 219
            P +++L
Sbjct: 123 PPSVEDL 129

>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase From Yeast Length = 186

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 94  KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153
           + +V+ G  G G+  +   L  ++PD + + V  TTR+PR+ E NG+ Y F+S DE  S 
Sbjct: 2   RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61
Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRT-GEFSPFVVFIA 212
           I  N+++E+       YG+ + +++++ + GK  ILD++ Q +K ++   E +   +FIA
Sbjct: 62  IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 121
Query: 213 APQLQNL 219
            P +++L
Sbjct: 122 PPSVEDL 128

>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate Monophosphate Kinase Length = 207

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 7/190 (3%)
Query: 96  LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
           +VL G  GVG+  ++  +       Y Y +  TTR  R  E +G  Y+F + D   + I 
Sbjct: 9   IVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIK 68
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQ 215
            +Q++EY  +    YGT ++ ++    EG    L++E +  K +R        +F+A P 
Sbjct: 69  DDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPS 128
Query: 216 LQNLSDY-----DGSLEKLAKESDILKSAYE--HFFDLTVVNNDIEETIGILEKAIEELH 268
           L++L +        S EK+    +  +   E  + +D  VVN+++E     ++  +E  H
Sbjct: 129 LEHLRERLVGRGTESDEKIQSRINEARKEVEMMNLYDYVVVNDEVELAKNRIQCIVEAEH 188
Query: 269 TTPQWIPVSW 278
              + +   +
Sbjct: 189 LKRERVEAKY 198

>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase Length = 204

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 96  LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
           LV+ G  GVG+  +   ++++FP ++ + +  TTR+ R  E NG  YYF+  D+    + 
Sbjct: 15  LVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLK 74
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEF--SPFVVFIAA 213
             Q+LE+  + +  YGT          EGKI + +     +K L+  +       +F+  
Sbjct: 75  EGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEXNINGVKQLKESKHIQDGIYIFVKP 134
Query: 214 P-------QLQNLS-----DYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILE 261
           P       +L+N +     + +   ++L +E D    A +  F+  +VN+D+  T   L 
Sbjct: 135 PSIDILLGRLKNRNTEKPEEINKRXQELTREXD---EADKVGFNYFIVNDDLARTYAELR 191
Query: 262 KAIEELHTTPQW 273
           + +  L + PQ 
Sbjct: 192 EYL--LGSYPQL 201

>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium Falciparum Length = 218

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%)
Query: 96  LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
           LV+ G  GVG+  +   L+N+FP+ + + V  TTR  R  E+ G  YYFI        + 
Sbjct: 26  LVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEF--SPFVVFIAA 213
              +LEY  + +  YGT      +  ++ KI + ++    +K L+      +   +FI  
Sbjct: 86  NEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKP 145
Query: 214 PQ--------LQNLSDYDGSLEKLAKESDI-LKSAYEHFFDLTVVNNDIEET 256
           P         L   ++    ++K  ++ +I L  A    F+L+++N+D+  T
Sbjct: 146 PSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLT 197

>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste Kinase From Listeria Monocytogenes Egd-E Length = 208

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 55/126 (43%)
Query: 96  LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
           +VL G  GVG+  ++  +       + Y +  TTR PR  E++G  YYF S +     I 
Sbjct: 11  IVLSGPSGVGKGTVREAVFKDPETSFDYSISXTTRLPREGEQDGVDYYFRSREVFEQAIK 70
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQ 215
             + LEY  +    YGT LE +      G    L++E Q    +R        +F+  P 
Sbjct: 71  DGKXLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAXQVRKAXPEGIFIFLTPPD 130
Query: 216 LQNLSD 221
           L  L +
Sbjct: 131 LSELKN 136

>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli Length = 219

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 11/189 (5%)
Query: 95  TLVLLGA-HGVGRRHIKNTLINKFP-DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMS 152
           TL ++ A  G G+  +   L+   P       V HTTR PR  E +G  Y+F++HDE   
Sbjct: 17  TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKE 76
Query: 153 DIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIA 212
            I+ + +LE+       YGT  E I ++   G    LD++ Q  + +R        +FI 
Sbjct: 77  XISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKXPHARSIFIL 136
Query: 213 APQLQNLSDY-----DGSLEKLAKESDILKSAYEHF--FDLTVVNNDIEETIGILEKAI- 264
            P    L          S E +AK      +   H+  +D  +VN+D +  +  L+  I 
Sbjct: 137 PPSKIELDRRLRGRGQDSEEVIAKRXAQAVAEXSHYAEYDYLIVNDDFDTALTDLKTIIR 196
Query: 265 -EELHTTPQ 272
            E L  + Q
Sbjct: 197 AERLRXSRQ 205

>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In Complex With Gdp Length = 207

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 11/189 (5%)
Query: 95  TLVLLGA-HGVGRRHIKNTLINKFP-DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMS 152
           TL ++ A  G G+  +   L+   P       V HTTR PR  E +G  Y+F++HDE   
Sbjct: 5   TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKE 64
Query: 153 DIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIA 212
            I+ + +LE+       YGT  E I ++   G    LD++ Q  + +R        +FI 
Sbjct: 65  MISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFIL 124
Query: 213 APQLQNLSDY-----DGSLEKLAKESDILKSAYEHF--FDLTVVNNDIEETIGILEKAI- 264
            P    L          S E +AK      +   H+  +D  +VN+D +  +  L+  I 
Sbjct: 125 PPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLKTIIR 184
Query: 265 -EELHTTPQ 272
            E L  + Q
Sbjct: 185 AERLRMSRQ 193

>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma Phagocytophilum Length = 231

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 96  LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
           LVL    G G+  + N L+ K  +     V  TTR+ R  E+ G+ YYF+  +E +   +
Sbjct: 30  LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSPFVVFIAAP 214
             + +E+       YG   + +     +G   +L ++ Q A K +         +FI  P
Sbjct: 90  NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPP 149
Query: 215 QLQNLSDYDGSLEKLAKESDILK-----SAYE----HFFDLTVVNNDIEET 256
            ++ L        + A +S++++     +A+E      +D  +VN DIEET
Sbjct: 150 SMEELRRR--LCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEET 198

>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From Mycobacterium Tuberculosis (Rv1389) Length = 228

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 14/180 (7%)
Query: 89  PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHD 148
           P+   + +VL G   VG+  +   L  + P+ + + V  TTR PR  E +G  Y+FI   
Sbjct: 19  PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLH-FSVSATTRCPRPGEVDGVDYHFIDPT 77
Query: 149 EMMSDIAANQYLEYGTHEDAMY--GTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSP 206
                I   + LE+      ++  GT  + +R     G   +++V+    + ++      
Sbjct: 78  RFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEA 137
Query: 207 FVVFIAAPQLQNLSDYDGSLEKLAKESDILKS---------AYEHFFDLTVVNNDIEETI 257
             VF+A P  Q+L      + +  + +D+++          A +  FD  VVN  +E   
Sbjct: 138 VTVFLAPPSWQDLQAR--LIGRGCETADVIQRRLDTARIELAAQGDFDKVVVNRRLESAC 195

>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium Tuberculosis Guanylate Kinase Length = 207

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 89  PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHD 148
           P+   + +VL G   VG+  +   L  + P+ + + V  TTR+PR  E +G  Y+FI   
Sbjct: 16  PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLH-FSVSATTRAPRPGEVDGVDYHFIDPT 74
Query: 149 EMMSDIAANQYLEYGTHEDAMY--GTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSP 206
                I   + LE+      ++  GT  + +R     G   +++V+    + ++      
Sbjct: 75  RFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEA 134
Query: 207 FVVFIAAPQLQNLSDYDGSLEKLAKESDILKS---------AYEHFFDLTVVNNDIE 254
             VF+A P  Q+L      + +  + +D+++          A +  FD  VVN  +E
Sbjct: 135 VTVFLAPPSWQDLQAR--LIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE 189

>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium Tuberculosis (Rv1389) Length = 228

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 89  PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHD 148
           P+   + +VL G   VG+  +   L  + P+ + + V  TTR+PR  E +G  Y+FI   
Sbjct: 19  PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLH-FSVSATTRAPRPGEVDGVDYHFIDPT 77
Query: 149 EMMSDIAANQYLEYGTHEDAMY--GTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSP 206
                I   + LE+      ++  GT  + +R     G   +++V+    + ++      
Sbjct: 78  RFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEA 137
Query: 207 FVVFIAAPQLQNLSDYDGSLEKLAKESDILKS---------AYEHFFDLTVVNNDIE 254
             VF+A P  Q+L      + +  + +D+++          A +  FD  VVN  +E
Sbjct: 138 VTVFLAPPSWQDLQAR--LIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE 192

>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii Length = 205

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 92  KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM 151
           K    ++    G G+  +   L+    +     + HTTR  R  ++ G  Y+FI      
Sbjct: 6   KANLFIISAPSGAGKTSLVRALVKALAE-IKISISHTTRPKRPGDQEGVDYFFIDETRFQ 64
Query: 152 SDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFI 211
           + +    +LE+ T  +  YGT+ + + R  + G+  +L+++ Q  + +R        +FI
Sbjct: 65  AXVKEGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFI 124
Query: 212 AAPQLQNL--------SDYDGSLEK---LAKESDILKSAYEHFFDLTVVNNDIEETI 257
             P ++ L         D    +E+   LA+E    + A+   FD  VVN++ ++ +
Sbjct: 125 LPPSIEALRERLIKRRQDDTAIIEQRLALARE----EXAHYKEFDYLVVNDNFDQAV 177

>pdb|3LH5|A Chain A, Crystal Structure Of The Sh3-Guanylate Kinase Core Domain Of Zo-1 Length = 251

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAA 213
           IA ++  + GT + +    +L TI++I  + K A+LDV P A+  L   ++ P VVF+  
Sbjct: 119 IAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNP 178
Query: 214 PQLQNLS--------DYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEET-IGILEKAI 264
              Q +         +   S  KL + S  L+    H F  T+  N + +   G L++AI
Sbjct: 179 DSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAI 238
Query: 265 EELHTTPQWI 274
           ++      W+
Sbjct: 239 QQQQNQLVWV 248

>pdb|3KFV|A Chain A, Crystal Structure Of The Sh3-Kinase Fragment Of Tight Junction Protein 3 (Tjp3) In Apo-Form Length = 308

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 173 KLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFI---AAPQLQNLSDY-----DG 224
           KL+T+R I ++ K A+LDV P A++ L   ++ P VVF    + P L+ L  +       
Sbjct: 187 KLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLAPASRR 246
Query: 225 SLEKLAKESDILKSAYEHFFDLTVVNNDIEET-IGILEKAIEELHTTPQW 273
           S  +L  ++  L+    H F  T+  N   +T    L+  I E  T P W
Sbjct: 247 STRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIW 296

>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human Zo-1 Length = 391

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAA 213
           IA ++  + GT + +    +L TI++I  + K A+LDV P A+  L   ++ P VVF+  
Sbjct: 259 IAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNP 318
Query: 214 PQLQNLS--------DYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEET-IGILEKAI 264
              Q +         +   S  KL + S  L+    H F  T+  N + +   G L++AI
Sbjct: 319 DSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAI 378
Query: 265 EELHTTPQWI 274
           ++      W+
Sbjct: 379 QQQQNQLVWV 388

>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex With Connexin-45 Peptide Length = 468

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAA 213
           IA ++  + GT + +    +L TI++I  + K A+LDV P A+  L   ++ P VVF+  
Sbjct: 251 IAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNP 310
Query: 214 PQLQNLS--------DYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEET-IGILEKAI 264
              Q +         +   S  KL + S  L+    H F  T+  N + +   G L++AI
Sbjct: 311 DSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAI 370
Query: 265 EELHTTPQWI 274
           ++      W+
Sbjct: 371 QQQQNQLVWV 380

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	330
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	1e-100
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	1e-95
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	6e-87
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	8e-82
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	8e-80
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	5e-54
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	3e-48
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	2e-47
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	3e-46
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	1e-32
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	1e-31
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	4e-31
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	2e-29
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	2e-25
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	2e-24
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	1e-22
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	3e-22
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	7e-20
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	2e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	6e-04

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score =  295 bits (757), Expect = e-100
 Identities = 72/286 (25%), Positives = 130/286 (45%), Gaps = 32/286 (11%)

Query: 2   FQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRK 58
             +I   D  WWQAR+   D+     G IPS    E R                      
Sbjct: 31  LHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREW-------------------- 70

Query: 59  KKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
            +L    + +   +   +  +++YE V ++     + +++LG     +    + L+++FP
Sbjct: 71  SRLKAKDWGSSSGSQGREDSVLSYETVTQMEVHYARPIIILGP---TKDRANDDLLSEFP 127

Query: 119 DKYAYPVPHTTRSPRSDEENGRAYYFIS-HDEMMSDIAANQYLEYGTHEDAMYGTKLETI 177
           DK+   VPHTTR  R  E +GR Y+F+S  ++M  DI A++++E G +   +YGT ++++
Sbjct: 128 DKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSV 187

Query: 178 RRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDG-----SLEKLAKE 232
           R + ++GK  ILDV   A++ L+     P  +FI    L+N+ + +         K    
Sbjct: 188 REVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDR 247

Query: 233 SDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSW 278
           +  L+  +   F   V  +  EE    +++ IE+L     W+P   
Sbjct: 248 ATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARE 293

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score =  284 bits (729), Expect = 1e-95
 Identities = 72/286 (25%), Positives = 129/286 (45%), Gaps = 41/286 (14%)

Query: 2   FQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRK 58
             + +  D  WWQAR+   DN     G++PS    E +                      
Sbjct: 35  LHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRWERK---------------------- 72

Query: 59  KKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
                    A+  +V  + ++++YE V +L     + +++LG     +  I + LI+++P
Sbjct: 73  -------MRARDRSVKSEENVLSYEAVQRLSINYTRPVIILGP---LKDRINDDLISEYP 122

Query: 119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-SDIAANQYLEYGTHEDAMYGTKLETI 177
           DK+   VPHTTR  R  E +GR Y+F+S  E M  DI  + ++E G + D +YGT + ++
Sbjct: 123 DKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASV 182

Query: 178 RRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDY-----DGSLEKLAKE 232
           R + ++GK  ILDV   A+K L+  +  P  VFI    + ++ +      +   +K  + 
Sbjct: 183 REVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYER 242

Query: 233 SDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSW 278
           +  ++  +  +F   V  + IEE    ++  I        W+P   
Sbjct: 243 AIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSKE 288

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score =  275 bits (703), Expect = 6e-87
 Identities = 74/287 (25%), Positives = 131/287 (45%), Gaps = 32/287 (11%)

Query: 1   MFQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGR 57
           +  +I   D  WWQAR+   D+     G IPS    E R                  + R
Sbjct: 456 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERRE-----------------WSR 498

Query: 58  KKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKF 117
            K      + +   +   +  +++YE V ++     + +++LG     +    + L+++F
Sbjct: 499 LKAK---DWGSSSGSQGREDSVLSYETVTQMEVHYARPIIILGP---TKDRANDDLLSEF 552

Query: 118 PDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-SDIAANQYLEYGTHEDAMYGTKLET 176
           PDK+   VPHTTR  R  E +GR Y+F+S  E M  DI A++++E G +   +YGT +++
Sbjct: 553 PDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQS 612

Query: 177 IRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDG-----SLEKLAK 231
           +R + ++GK  ILDV   A++ L+     P  +FI    L+N+ + +         K   
Sbjct: 613 VREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFD 672

Query: 232 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSW 278
            +  L+  +   F   V  +  EE    +++ IE+L     W+P   
Sbjct: 673 RATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARE 719

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} Length = 197

 Score =  245 bits (628), Expect = 8e-82
 Identities = 94/193 (48%), Positives = 143/193 (74%), Gaps = 3/193 (1%)

Query: 82  YEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRA 141
                 L    RKTLVL+GA GVGR HIKN L+++ P+K+ YPVP+TTR PR  EE+G+ 
Sbjct: 8   SSGRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKE 67

Query: 142 YYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRT 201
           Y+FIS +EM  +I+AN++LE+G+++  M+GTK ET+ +IH++ KIAILD+EPQ LKI+RT
Sbjct: 68  YHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRT 127

Query: 202 GEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILE 261
            E SPF+VFIA       ++   +L++L K+S+ ++S Y H+FDL++VNN ++ET+  L+
Sbjct: 128 AELSPFIVFIAPTDQGTQTE---ALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQ 184

Query: 262 KAIEELHTTPQWI 274
           +A ++  ++PQW+
Sbjct: 185 EAFDQACSSPQWV 197

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Length = 180

 Score =  240 bits (614), Expect = 8e-80
 Identities = 125/178 (70%), Positives = 153/178 (85%)

Query: 90  SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDE 149
           S  RKTLVLLGAHGVGRRHIKNTLI K PD++AYP+PHTTR P+ DEENG+ YYF+SHD+
Sbjct: 2   SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQ 61

Query: 150 MMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVV 209
           MM DI+ N+YLEYG+HEDAMYGTKLETIR+IH++G IAILDVEPQALK+LRT EF+PFVV
Sbjct: 62  MMQDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVV 121

Query: 210 FIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEEL 267
           FIAAP +    + D SL++L KESDIL+  Y H+FDLT++NN+I+ETI  LE+A+E +
Sbjct: 122 FIAAPTITPGLNEDESLQRLQKESDILQRTYAHYFDLTIINNEIDETIRHLEEAVELV 179

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score =  179 bits (454), Expect = 5e-54
 Identities = 42/291 (14%), Positives = 89/291 (30%), Gaps = 45/291 (15%)

Query: 2   FQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKL 61
             +  K +++WW  R        G IPSP   E           +          +    
Sbjct: 70  LHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEF---------KLHSK 120

Query: 62  YKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRR---HIKNTLINKFP 118
            K     K        D+V             + +VL+G    G      ++  L +   
Sbjct: 121 EKRMPFFKKTEHTPPYDVVPS----------MRPVVLVGPSLKGYEVTDMMQKALFDFLK 170

Query: 119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAM--YGTKLET 176
            ++   +   TR              ++   ++++ + +  +E      ++    +++E 
Sbjct: 171 HRFEGRISI-TRVTAD--------ISLAKRSVLNNPSKHAIIERSNTRSSLAEVQSEIER 221

Query: 177 IRRIHQEGKIAILDVEP-QALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKE--- 232
           I  + +  ++ +LD +       L     +P VV++     + L     S  K   +   
Sbjct: 222 IFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLN 281

Query: 233 -----SDILKSAYEHFFDLTVVNNDIEETIGILEKAIEEL---HTTPQWIP 275
                +D L       FD+ +  N +E+    L   +E        P    
Sbjct: 282 VQMVAADKLAQCPPELFDVILDENQLEDACEHLADYLEAYWKATHPPSSNL 332

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score =  165 bits (419), Expect = 3e-48
 Identities = 58/289 (20%), Positives = 103/289 (35%), Gaps = 45/289 (15%)

Query: 2   FQIIS---KDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIF 55
           F+++          W A +   ++     G+IP+    E   +                +
Sbjct: 131 FRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADFW 190

Query: 56  GRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLIN 115
             +         +K N    + DL       K P+++R   V+L   G  R         
Sbjct: 191 RFRGL-----RSSKRNLRKSREDLSAQPVQTKFPAYER---VVLREAGFLR--------- 233

Query: 116 KFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLE 175
             P     P+    R   + EE                IA ++  + GT + +    +L 
Sbjct: 234 --PVTIFGPIADVAREKLAREEPDI-----------YQIAKSEPRDAGTDQRSSGIIRLH 280

Query: 176 TIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD--------YDGSLE 227
           TI++I  + K A+LDV P A+  L   ++ P VVF+     Q +             S  
Sbjct: 281 TIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSAR 340

Query: 228 KLAKESDILKSAYEHFFDLTV-VNNDIEETIGILEKAIEELHTTPQWIP 275
           KL + S  L+    H F  T+ +N+  +   G L++AI++      W+ 
Sbjct: 341 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVS 389

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score =  165 bits (418), Expect = 2e-47
 Identities = 58/293 (19%), Positives = 102/293 (34%), Gaps = 45/293 (15%)

Query: 2   FQIIS---KDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIF 55
           F+++          W A +   ++     G+IP+    E   +                +
Sbjct: 123 FRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADFW 182

Query: 56  GRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLIN 115
             +         +K N    + DL       K P+++R   V+L   G  R         
Sbjct: 183 RFRGL-----RSSKRNLRKSREDLSAQPVQTKFPAYER---VVLREAGFLR--------- 225

Query: 116 KFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLE 175
             P     P+    R   + EE                IA ++  + GT + +    +L 
Sbjct: 226 --PVTIFGPIADVAREKLAREEPDI-----------YQIAKSEPRDAGTDQRSSGIIRLH 272

Query: 176 TIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD--------YDGSLE 227
           TI++I  + K A+LDV P A+  L   ++ P VVF+     Q +             S  
Sbjct: 273 TIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSAR 332

Query: 228 KLAKESDILKSAYEHFFDLTVVNNDIEETI-GILEKAIEELHTTPQWIPVSWL 279
           KL + S  L+    H F  T+  N + +   G L++AI++      W+     
Sbjct: 333 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSEGKA 385

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score =  158 bits (400), Expect = 3e-46
 Identities = 56/312 (17%), Positives = 93/312 (29%), Gaps = 72/312 (23%)

Query: 2   FQIISKDDHN---------WWQAR---KDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQ 49
           F ++                W A    +D      G+IP+    E   +     +     
Sbjct: 29  FHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAEQLASLEAAQRAVGVG 88

Query: 50  VNCSIFGRK----KKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTL--------- 96
              S          +L   +  AK      + DL       + P ++R  L         
Sbjct: 89  PGSSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSALTRQGRYPPYERVVLREASFKRPV 148

Query: 97  VLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAA 156
           V+LG            L  + PD++       +R+    +                    
Sbjct: 149 VILGPV---ADIAMQKLTAEMPDQFEIA-ETVSRTDSPSK-------------------- 184

Query: 157 NQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQL 216
                           KL+T+R I ++ K A+LDV P A++ L   ++ P VVF      
Sbjct: 185 --------------IIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESR 230

Query: 217 QNLSD--------YDGSLEKLAKESDILKSAYEHFFDLTV-VNNDIEETIGILEKAIEEL 267
             L             S  +L  ++  L+    H F  T+ +N   +     L+  I E 
Sbjct: 231 PALKALRQWLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQ 290

Query: 268 HTTPQWIPVSWL 279
            T P W     L
Sbjct: 291 QTRPIWTAEDQL 302

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Length = 198

 Score =  116 bits (293), Expect = 1e-31
 Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 18/191 (9%)

Query: 96  LVLLGAHGVGRRHIKNTLINK----FPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM 151
           +VL G  G G    K+TL+ K        + + V HTTR+PR  EE+G+ YYF++ + M 
Sbjct: 7   VVLSGPSGAG----KSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQ 62

Query: 152 SDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFI 211
            DIAA  ++E+      +YGT  E +R +    +I +LDV+ Q ++ ++  +  P  +F+
Sbjct: 63  RDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFV 122

Query: 212 AAPQLQNL--------SDYDGSLEK-LAK-ESDILKSAYEHFFDLTVVNNDIEETIGILE 261
             P L  L        ++ + SL K LA   +D+  S     FDL ++N+D+++    L+
Sbjct: 123 QPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLK 182

Query: 262 KAIEELHTTPQ 272
           +A+ E     Q
Sbjct: 183 QALSEEIKKAQ 193

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Length = 204

 Score =  115 bits (290), Expect = 4e-31
 Identities = 40/180 (22%), Positives = 83/180 (46%), Gaps = 11/180 (6%)

Query: 96  LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
           LV+ G  GVG+  +   ++++FP ++ + +  TTR+ R  E NG  YYF+  D+    + 
Sbjct: 15  LVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLK 74

Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSPFV-VFIAA 213
             Q+LE+  + +  YGT          EGKI + ++      ++  +      + +F+  
Sbjct: 75  EGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKP 134

Query: 214 PQLQNL--------SDYDGSLEK-LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAI 264
           P +  L        ++    + K + + +  +  A +  F+  +VN+D+  T   L + +
Sbjct: 135 PSIDILLGRLKNRNTEKPEEINKRMQELTREMDEADKVGFNYFIVNDDLARTYAELREYL 194

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Length = 218

 Score =  111 bits (279), Expect = 2e-29
 Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 19/190 (10%)

Query: 92  KRKTLVLLGAHGVGRRHIKNTLINK----FPDKYAYPVPHTTRSPRSDEENGRAYYFISH 147
               LV+ G  GVG    K TLI K    FP+ + + V  TTR  R  E+ G  YYFI  
Sbjct: 22  NIYPLVICGPSGVG----KGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDK 77

Query: 148 DEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSP 206
                 +    +LEY  + +  YGT      +  ++ KI + ++      ++ ++     
Sbjct: 78  TIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKN 137

Query: 207 FV-VFIAAPQLQNL--------SDYDGSLEK-LAKESDILKSAYEHFFDLTVVNNDIEET 256
            + +FI  P    L        ++    ++K + + +  L  A    F+L+++N+D+  T
Sbjct: 138 ALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLT 197

Query: 257 IGILEKAIEE 266
              L+  +  
Sbjct: 198 YQQLKNYLLN 207

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Length = 207

 Score =  100 bits (251), Expect = 2e-25
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 13/180 (7%)

Query: 96  LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
           +VL G  GVG+  ++  +       Y Y +  TTR  R  E +G  Y+F + D   + I 
Sbjct: 9   IVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIK 68

Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQ 215
            +Q++EY  +    YGT ++ ++    EG    L++E +  K +R        +F+A P 
Sbjct: 69  DDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPS 128

Query: 216 LQNLSDYDGSLEKLAKESD--I---LKSA-----YEHFFDLTVVNNDIEETIGILEKAIE 265
           L++L +    L     ESD  I   +  A       + +D  VVN+++E     ++  +E
Sbjct: 129 LEHLRE---RLVGRGTESDEKIQSRINEARKEVEMMNLYDYVVVNDEVELAKNRIQCIVE 185

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Length = 208

 Score = 97.2 bits (243), Expect = 2e-24
 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)

Query: 96  LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
           +VL G  GVG+  ++  +       + Y +  TTR PR  E++G  YYF S +     I 
Sbjct: 11  IVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIK 70

Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQ 215
             + LEY  +    YGT LE +      G    L++E Q    +R        +F+  P 
Sbjct: 71  DGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPD 130

Query: 216 LQNLSDYDGSLEKLAKESD--I---LKSA-----YEHFFDLTVVNNDIEETIGILEKAIE 265
           L  L +    +     ES   +   +++A         +D  VVN+        +  A++
Sbjct: 131 LSELKN---RIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVNDV-------VANAVQ 180

Query: 266 ELHT 269
           ++  
Sbjct: 181 KIKG 184

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Length = 207

 Score = 92.6 bits (231), Expect = 1e-22
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 25/187 (13%)

Query: 96  LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
           +VL G   VG+  +   L  + P+   + V  TTR+PR  E +G  Y+FI        I 
Sbjct: 23  VVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID 81

Query: 156 ANQYLEYGT-HEDA-MYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSPFVVFIA 212
             + LE+   H      GT  + +R     G   +++V+   A  I +T   +   VF+A
Sbjct: 82  QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-VFLA 140

Query: 213 APQLQNLSDYDGSLEKLAKESD--I---LKSA-----YEHFFDLTVVNNDIEETIGILEK 262
            P  Q+L      L     E+   I   L +A      +  FD  VVN         LE 
Sbjct: 141 PPSWQDLQA---RLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRR-------LES 190

Query: 263 AIEELHT 269
           A  EL +
Sbjct: 191 ACAELVS 197

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Length = 231

 Score = 92.3 bits (230), Expect = 3e-22
 Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 14/181 (7%)

Query: 96  LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
           LVL    G G+  + N L+ K  +     V  TTR+ R  E+ G+ YYF+  +E +   +
Sbjct: 30  LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89

Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSPFVVFIAAP 214
             + +E+       YG   + +     +G   +L ++ Q A K +         +FI  P
Sbjct: 90  NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPP 149

Query: 215 QLQNLSDYDGSLEKLAKESDI-----LKSAYE---HF--FDLTVVNNDIEETIGILEKAI 264
            ++ L      L     +        LK A     H   +D  +VN DIEET   +   +
Sbjct: 150 SMEELRR---RLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNIL 206

Query: 265 E 265
            
Sbjct: 207 R 207

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Length = 205

 Score = 85.2 bits (212), Expect = 7e-20
 Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 16/181 (8%)

Query: 96  LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
            ++    G G+  +   L+    +     + HTTR  R  ++ G  Y+FI      + + 
Sbjct: 10  FIISAPSGAGKTSLVRALVKALAE-IKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK 68

Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSPFVVFIAAP 214
              +LE+ T  +  YGT+ + + R  + G+  +L+++ Q A +I      +   +FI  P
Sbjct: 69  EGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALS-IFILPP 127

Query: 215 QLQNLSDYDGSLEKLAKESDI-----LKSAYE---HF--FDLTVVNNDIEETIGILEKAI 264
            ++ L +    L K  ++        L  A E   H+  FD  VVN++ ++ +  L   I
Sbjct: 128 SIEALRE---RLIKRRQDDTAIIEQRLALAREEMAHYKEFDYLVVNDNFDQAVQNLIHII 184

Query: 265 E 265
            
Sbjct: 185 S 185

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Length = 219

 Score = 84.1 bits (209), Expect = 2e-19
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 22/185 (11%)

Query: 96  LVLLGAHGVGRRHIKNTLINKF-----PDKYAYPVPHTTRSPRSDEENGRAYYFISHDEM 150
            ++    G G    K++LI               V HTTR PR  E +G  Y+F++HDE 
Sbjct: 19  YIVSAPSGAG----KSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEF 74

Query: 151 MSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVF 210
              I+ + +LE+       YGT  E I ++   G    LD++ Q  + +R        +F
Sbjct: 75  KEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIF 134

Query: 211 IAAPQLQNLSDYDGSLEKLAKESDI-----LKSAYE---HF--FDLTVVNNDIEETIGIL 260
           I  P    L      L    ++S+      +  A     H+  +D  +VN+D +  +  L
Sbjct: 135 ILPPSKIELDR---RLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDL 191

Query: 261 EKAIE 265
           +  I 
Sbjct: 192 KTIIR 196

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 43/327 (13%), Positives = 86/327 (26%), Gaps = 99/327 (30%)

Query: 23  SAGLIPSPE--LQEWRTACSTIDKTKHEQVNCS---------IFGRKKKLYKDKYLAKHN 71
           +     SPE  L+  +     ID     + + S         I    ++L K K    + 
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYE 244

Query: 72  AVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS 131
                L  V   +     +   K L+                              TTR 
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILL------------------------------TTR- 273

Query: 132 PRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG-TKLETIRRIHQEGKIAILD 190
                            + ++D  +     + + +      T  E    + +       D
Sbjct: 274 ----------------FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 191 VEPQALKILRTGEFSPFVVFIAAPQLQ---NLSDY-------------DGSLEKLAKESD 234
           +  + L        +P  + I A  ++      D              + SL  L  E  
Sbjct: 318 LPREVLTT------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPA 369

Query: 235 ILKSAYEHFFDLTVVNNDI---EETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYE 291
             +   + F  L+V           + ++   + +  +    + V+ L K S + K   E
Sbjct: 370 EYR---KMFDRLSVFPPSAHIPTILLSLIWFDVIK--SDVMVV-VNKLHKYSLVEKQPKE 423

Query: 292 HFFDLTVVNNDIEETIGILEKAIEELH 318
               +      I   + +  +    LH
Sbjct: 424 STISI----PSIYLELKVKLENEYALH 446

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 12/44 (27%)

Query: 2  FQIISKDDHNWWQARKDNVAGSAGLIPSP----------ELQEW 35
          + ++   + +WW+ +  +  G  G +PS           E  EW
Sbjct: 44 YCLLDSSEIHWWRVQ--DRNGHEGYVPSSYLVEKSPNNLETYEW 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	100.0
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	100.0
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	100.0
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	100.0
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	100.0
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	100.0
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	100.0
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	100.0
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	100.0
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	100.0
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	100.0
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	100.0
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.98
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.97
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.97
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.93
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.93
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.91
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.87
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.74
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	99.42
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	99.42
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	99.4
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	99.38
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.34
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.15
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	99.12
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	99.08
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.01
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.94
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.94
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.93
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.93
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.92
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	98.91
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	98.9
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.87
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.86
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.84
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.84
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.83
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	98.81
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.77
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.76
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.74
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.73
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.73
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.72
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.7
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	98.7
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.68
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.68
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.66
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	98.6
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.6
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.57
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.56
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.54
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.51
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.48
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	98.48
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.47
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	98.46
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	98.46
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.4
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.4
2vli_A	183	Antibiotic resistance protein; transferase, tunica	98.4
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.4
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	98.38
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.36
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.33
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.31
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.31
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.3
1via_A	175	Shikimate kinase; structural genomics, transferase	98.25
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	98.25
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.24
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.18
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.18
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.17
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.16
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.14
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.14
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	98.14
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	98.13
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	98.13
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.12
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.11
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.1
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	98.09
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.09
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	98.08
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	98.06
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.06
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.06
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.05
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	98.03
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.03
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	98.02
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	98.01
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.98
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.97
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.95
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.92
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.92
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.9
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.89
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	97.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.86
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.85
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.85
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.83
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.83
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.82
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.78
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.76
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.76
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.72
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.69
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.68
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.66
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.65
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.54
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.5
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.42
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.39
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.39
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	97.32
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.28
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.25
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.24
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.24
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.22
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.18
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.17
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.15
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.07
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	97.06
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.03
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.02
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.99
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.98
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.96
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.95
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.95
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.92
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.92
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.91
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.91
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.88
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.87
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.87
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	96.82
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	96.81
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.81
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.79
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.79
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.78
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.78
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.77
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	96.76
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.76
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.76
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.75
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.75
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	96.73
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.73
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.72
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.71
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	96.7
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.69
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.68
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.67
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.67
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.66
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.66
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.65
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.63
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.62
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.61
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.6
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	96.6
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	96.6
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.59
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.58
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.56
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.56
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.56
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.55
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.55
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.53
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.53
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.52
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.52
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.51
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.51
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.51
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.5
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.49
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.47
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.46
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.46
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.46
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	96.46
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.44
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.44
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.44
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.44
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.43
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.42
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.41
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.41
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.41
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.4
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.37
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.36
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.36
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.33
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.33
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	96.33
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.32
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.31
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.3
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.3
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.3
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.3
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.29
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.29
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.29
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	96.29
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.28
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	96.28
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.28
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	96.27
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.27
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.26
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.25
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.24
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.24
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.23
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.23
1g6h_A	257	High-affinity branched-chain amino acid transport	96.23
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.23
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.22
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.22
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.21
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.21
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.21
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.2
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.2
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.2
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.2
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	96.19
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.19
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	96.18
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.18
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.18
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.16
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.15
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.15
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.15
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.15
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	96.14
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.13
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.13
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.13
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	96.13
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.12
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.12
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.11
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.11
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	96.1
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.1
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	96.1
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	96.1
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.1
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.09
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.09
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.09
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.09
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	96.08
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.08
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.08
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.08
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.08
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.07
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.06
3bos_A	242	Putative DNA replication factor; P-loop containing	96.06
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.06
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	96.05
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.05
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.05
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.05
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.05
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	96.04
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.04
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.04
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.04
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	96.03
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	96.02
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.01
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	96.0
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.99
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.99
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	95.98
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	95.98
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.97
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	95.97
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.97
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.95
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.95
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.95
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	95.94
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.94
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.93
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	95.93
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	95.92
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.91
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.91
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.9
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.9
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.9
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.9
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	95.89
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	95.89
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	95.89
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	95.89
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	95.88
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.87
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.87
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	95.86
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	95.86
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.86
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.85
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.85
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	95.85
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.84
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.84
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.83
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.82
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	95.82
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.8
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	95.8
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.8
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.79
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.79
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	95.79
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.78
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.77
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	95.77
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.76
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.76
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	95.75
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	95.74
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	95.74
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.74
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.74
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.73
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.73
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.73
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	95.72
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.72
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.72
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.71
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.71
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.71
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.7
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.7
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	95.69
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	95.69
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.69
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.68
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.67
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.67
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.67
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.67
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.65
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	95.64
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.64
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	95.64
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.63
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.63
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.62
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.62
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.61
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.6
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	95.59
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.59
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.59
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.59
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	95.58
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.57
1awj_A	77	ITK; transferase, regulatory intramolecular comple	95.57
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	95.57
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	95.57
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.55
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	95.55
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	95.55
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.54
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	95.54
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	95.53
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.53
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	95.53
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	95.53
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	95.5
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	95.5
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.5
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.5
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.48
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.48
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.48
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	95.48
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	95.48
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	95.47
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	95.47
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.47
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.46
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	95.46
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.45
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.45
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	95.45
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	95.44
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.44
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.43
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	95.42
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	95.41
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	95.41
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	95.41
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	95.41
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	95.4
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	95.4
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.4
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	95.4
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	95.38
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.38
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	95.37
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.37
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.37
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.37
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	95.36
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.36
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.36
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	95.36
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	95.36
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.35
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	95.35
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.35
1i07_A	60	Epidermal growth factor receptor kinase substrate	95.34
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	95.33
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.31
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	95.29
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.28
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.27
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	95.26
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.26
2og2_A	359	Putative signal recognition particle receptor; nuc	95.26
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	95.26
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	95.25
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.25
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.25
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	95.24
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.23
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.23
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.23
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.23
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.22
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	95.21
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.21
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	95.2
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.19
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	95.19
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.19
1u3o_A	82	Huntingtin-associated protein-interacting protein;	95.17
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	95.17
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	95.16
1wxq_A	397	GTP-binding protein; structural genomics, riken st	95.14
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.14
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	95.14
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	95.13
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.13
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	95.13
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	95.12
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	95.12
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.11
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.09
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	95.09
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.08
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.07
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.07
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	95.06
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	95.06
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	95.06
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	95.05
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	95.05
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	95.04
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	95.04
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.03
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	95.03
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	95.02

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=100.00  E-value=2.7e-67  Score=496.34  Aligned_cols=245  Identities=28%  Similarity=0.541  Sum_probs=214.0

Q ss_pred             CcEEEeCCCCCceeEEeCC---CCCCceeeCChhHHHHHHhhccccccccccccccccccccccccchhhhccccccCCc
Q psy933            1 MFQIISKDDHNWWQARKDN---VAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQL   77 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~---~~~~~GlIPS~~~~e~r~~~~~~~~~~~~~~~~~~~~rk~k~~~~~~~~~~~~~~~~~   77 (330)
                      ||||+|++|++|||||+++   .+..+|||||+.++|+|...+.                  +           ...+.+
T Consensus        34 iL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~~~e~~~~~~~------------------~-----------~~~~~~   84 (292)
T 3tvt_A           34 ILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRWERKMRARD------------------R-----------SVKSEE   84 (292)
T ss_dssp             EEEEEECCSSSEEEECCCCC--------EEECHHHHHHHHHC--------------------------------------
T ss_pred             EEEEeecCCCCeEEEEEeCCCCCccceeEEeChHHHHHHHHHhh------------------c-----------cccccc
Confidence            7999999999999999963   3466999999999998753210                  0           011234


Q ss_pred             cccCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEe-cccchhhHHhc
Q psy933           78 DLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFI-SHDEMMSDIAA  156 (330)
Q Consensus        78 ~~~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fv-s~~~f~~~i~~  156 (330)
                      ++++||+|++++++.+|||||+||+   |+||+++|++.+|+.|..+|+||||+||+||+||+||||| ++++|++++++
T Consensus        85 ~~~~YE~V~~~~~~~~RpvVl~Gp~---K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~  161 (292)
T 3tvt_A           85 NVLSYEAVQRLSINYTRPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQN  161 (292)
T ss_dssp             -CCCEEEEEEEECSSCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHT
T ss_pred             cccchheEEeccCCCCCeEEEeCCC---HHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhc
Confidence            6789999999999999999999995   9999999999999999999999999999999999999999 88999999999


Q ss_pred             cceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC-----chHHHHHHHH
Q psy933          157 NQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD-----YDGSLEKLAK  231 (330)
Q Consensus       157 ~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~-----~~e~~~rl~~  231 (330)
                      |.||||++++||+|||++++|++++++|++||||++++|+++|+...++|++|||+|||++.|++     .+++.+++.+
T Consensus       162 ~~flE~a~~~gn~YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~  241 (292)
T 3tvt_A          162 HLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYE  241 (292)
T ss_dssp             TCEEEEEEETTEEEEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHH
T ss_pred             CceEEEEEEccceeEEehHHHHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHhCCCchhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998752     3455666776


Q ss_pred             HHHHHHhhccccceEEEecCCHHHHHHHHHHHHHHhcCCCcccccc
Q psy933          232 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS  277 (330)
Q Consensus       232 ~~~~ie~~~~~~fD~vI~N~dle~a~~~L~~~i~~~~~~~~WvP~s  277 (330)
                      .+.+++++|+|+||+||+|||+++|+++|+++|..++.+|+|||+.
T Consensus       242 r~~k~e~e~~~~fD~vIvNddle~a~~~l~~iI~~e~~~~~WVP~~  287 (292)
T 3tvt_A          242 RAIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSK  287 (292)
T ss_dssp             HHHHHHHHHTTTCSEEECCSSHHHHHHHHHHHHHHHTCSEEEEEC-
T ss_pred             HHHHHHHhhhhhCCEEEECcCHHHHHHHHHHHHHHhhCCCeEecCc
Confidence            7777888899999999999999999999999999999999999975

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=100.00  E-value=2.8e-60  Score=449.44  Aligned_cols=254  Identities=28%  Similarity=0.543  Sum_probs=222.0

Q ss_pred             CcEEEeCCCCCceeEEeCCCC---CCceeeCChhHHHHHHhhccccccccccccccccccccccccchhhhccccccCCc
Q psy933            1 MFQIISKDDHNWWQARKDNVA---GSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQL   77 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~---~~~GlIPS~~~~e~r~~~~~~~~~~~~~~~~~~~~rk~k~~~~~~~~~~~~~~~~~   77 (330)
                      ||+|++++|++||||++.+.+   +..|+|||..++|++...+..    .     ..|.           ++.+..++..
T Consensus        30 il~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e~~~~~~~~----~-----~~~~-----------~~~~~~~~~~   89 (295)
T 1kjw_A           30 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLK----A-----KDWG-----------SSSGSQGRED   89 (295)
T ss_dssp             EEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHHHHHTSCC------------CC-----------SCCSSCCCCC
T ss_pred             EEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHHHHHHhhhc----c-----cccC-----------cccccccccC
Confidence            689999999999999996533   589999999999987543210    0     0111           1112344566


Q ss_pred             cccCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEe-cccchhhHHhc
Q psy933           78 DLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFI-SHDEMMSDIAA  156 (330)
Q Consensus        78 ~~~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fv-s~~~f~~~i~~  156 (330)
                      .+++||+|.++++..+|+|||+||   ||+||+++|++.+|+.|..+|+||||+||+||++|+||||| |+++|++++++
T Consensus        90 ~~~~Ye~V~~~~~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~  166 (295)
T 1kjw_A           90 SVLSYETVTQMEVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQA  166 (295)
T ss_dssp             CCCCEEEEEEEECCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHT
T ss_pred             CCCCcceeeeecCCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHC
Confidence            789999999999888999999999   69999999999999899999999999999999999999999 99999999999


Q ss_pred             cceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc-----CchHHHHHHHH
Q psy933          157 NQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS-----DYDGSLEKLAK  231 (330)
Q Consensus       157 ~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~-----~~~e~~~rl~~  231 (330)
                      |.|+||++++||+|||++++|++++++|++||||++++|+++++...+.|++|||.|||+++|+     .++++++++.+
T Consensus       167 g~flE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~L~~R~t~~~i~~rl~  246 (295)
T 1kjw_A          167 HKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFD  246 (295)
T ss_dssp             TCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHHCTTSCHHHHHHHHH
T ss_pred             CCcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHHHHhcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998875     34566765555


Q ss_pred             HHHHHHhhccccceEEEecCCHHHHHHHHHHHHHHhcCCCcccccc
Q psy933          232 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS  277 (330)
Q Consensus       232 ~~~~ie~~~~~~fD~vI~N~dle~a~~~L~~~i~~~~~~~~WvP~s  277 (330)
                      .+.+++..+.+.||++|+|||+++|+++|.++|..++++|||||++
T Consensus       247 ~a~~~e~~~~~~fd~vivNd~le~a~~~l~~ii~~~~~~~~Wvp~~  292 (295)
T 1kjw_A          247 RATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPAR  292 (295)
T ss_dssp             HHHHHHHHHGGGCSEEECCSSHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred             HHHHHHHhccccCeEEEECcCHHHHHHHHHHHHHhccCCCEEeeCC
Confidence            5555677789999999999999999999999999999999999976

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=100.00  E-value=2.3e-55  Score=460.25  Aligned_cols=254  Identities=28%  Similarity=0.553  Sum_probs=223.2

Q ss_pred             CcEEEeCCCCCceeEEeCCC---CCCceeeCChhHHHHHHhhccccccccccccccccccccccccchhhhccccccCCc
Q psy933            1 MFQIISKDDHNWWQARKDNV---AGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQL   77 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~---~~~~GlIPS~~~~e~r~~~~~~~~~~~~~~~~~~~~rk~k~~~~~~~~~~~~~~~~~   77 (330)
                      ||||++++|++||||++.+.   ...+|||||..++|++...+..    .     ..|.           .+.+..++..
T Consensus       456 il~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e~~~~~~~~----~-----~~~~-----------~~~~~~~~~~  515 (721)
T 2xkx_A          456 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLK----A-----KDWG-----------SSSGSQGRED  515 (721)
T ss_pred             EEEEeecCCCCeEEEEECCCCCccCccceeecHHHHHHHHhhhcc----c-----cccc-----------Ccchhhcccc
Confidence            69999999999999999643   3678999999999986532110    0     0111           1112345667


Q ss_pred             cccCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEe-cccchhhHHhc
Q psy933           78 DLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFI-SHDEMMSDIAA  156 (330)
Q Consensus        78 ~~~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fv-s~~~f~~~i~~  156 (330)
                      .+++||+|.++++..+|+|||+||+   |+||+++|++.+|+.|.++++||||+||+||++|+||||| |+++|++++++
T Consensus       516 ~~~~Ye~V~~~~~~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~  592 (721)
T 2xkx_A          516 SVLSYETVTQMEVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRA  592 (721)
T ss_pred             cCCCceeeecccCCCCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhc
Confidence            7899999999999899999999995   9999999999999999999999999999999999999999 99999999999


Q ss_pred             cceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC-----chHHHHHHHH
Q psy933          157 NQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD-----YDGSLEKLAK  231 (330)
Q Consensus       157 ~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~-----~~e~~~rl~~  231 (330)
                      |.|+||++++||+|||++++|++++++|++||||++++|+++|+...++|++|||+|||+++|++     +++++++..+
T Consensus       593 ~~flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~l~~R~t~~~~~~rl~  672 (721)
T 2xkx_A          593 HKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFD  672 (721)
T ss_pred             CCceEEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHHHhccCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988753     4566766555


Q ss_pred             HHHHHHhhccccceEEEecCCHHHHHHHHHHHHHHhcCCCcccccc
Q psy933          232 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS  277 (330)
Q Consensus       232 ~~~~ie~~~~~~fD~vI~N~dle~a~~~L~~~i~~~~~~~~WvP~s  277 (330)
                      ++.+++..|.++||++|+|||+++|+++|+++|..++++|||||++
T Consensus       673 ~a~~~e~~~~~~fd~vi~Nd~l~~a~~~l~~~i~~~~~~~~Wvp~~  718 (721)
T 2xkx_A          673 RATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPAR  718 (721)
T ss_pred             HHHHHHHhccccCcEEEECcCHHHHHHHHHHHHHhccCCcEEeecc
Confidence            5666777899999999999999999999999999999999999975

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=100.00  E-value=6.3e-54  Score=427.24  Aligned_cols=248  Identities=22%  Similarity=0.305  Sum_probs=182.5

Q ss_pred             CcEEEeC---CCCCceeEEeCCCCC---CceeeCChhHHHHHHhhccccccccccccccccc----cccccccchhhhcc
Q psy933            1 MFQIISK---DDHNWWQARKDNVAG---SAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFG----RKKKLYKDKYLAKH   70 (330)
Q Consensus         1 iL~v~~~---~D~~WWQA~~~~~~~---~~GlIPS~~~~e~r~~~~~~~~~~~~~~~~~~~~----rk~k~~~~~~~~~~   70 (330)
                      ||||+|+   +|++||||++.+.++   .+|+|||+.++|++.+++..........++++++    |..|+.+.+...+.
T Consensus       122 IL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~~~~~~~~~~~f~~~~~~r~~kk~~~~~~~~~  201 (468)
T 3shw_A          122 VFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDL  201 (468)
T ss_dssp             EEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHHHHHHHHHC--------------------------------
T ss_pred             EEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHHHHHHHhhhhhccccccccchhhhccccccccccccchhhc
Confidence            7999999   799999999965443   7999999999999876644311111111122211    01111111223345


Q ss_pred             ccccCCccccCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccch
Q psy933           71 NAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEM  150 (330)
Q Consensus        71 ~~~~~~~~~~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f  150 (330)
                      ++.++..++++||+|++++++.+|||||+||||+|   |+++|++.+|+.|..+   ||| ||+||++|++|||      
T Consensus       202 ~~~~~~~~~~~YEeV~~~~~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~---~TR-pR~gE~dG~~Y~F------  268 (468)
T 3shw_A          202 SAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADV---AREKLAREEPDIYQIA---KSE-PRDAGTDQRSSGI------  268 (468)
T ss_dssp             -----CCCCCSEEEEEEECCSSCCCEEEESTTHHH---HHHHHHHHCTTTEEEC---CCB-C----------CB------
T ss_pred             ccccccccCCCcceeEcccCCCCCEEEEECCCHHH---HHHHHHHhCCCceeee---cCC-CCCcccccccCCc------
Confidence            67778888999999999999999999999999999   9999999999988764   699 9999999999999      


Q ss_pred             hhHHhccceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------Cc
Q psy933          151 MSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DY  222 (330)
Q Consensus       151 ~~~i~~~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~  222 (330)
                                           |++++|++++++|++|||||+++|+++|+...++|++|||+|||+++|+        ++
T Consensus       269 ---------------------Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~s  327 (468)
T 3shw_A          269 ---------------------IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPES  327 (468)
T ss_dssp             ---------------------CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTC
T ss_pred             ---------------------ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCC
Confidence                                 7999999999999999999999999999999999999999999999986        24


Q ss_pred             hHHHHHHHHHHHHHHhhccccceEEEecCCH-HHHHHHHHHHHHHhcCCCccccccccccc
Q psy933          223 DGSLEKLAKESDILKSAYEHFFDLTVVNNDI-EETIGILEKAIEELHTTPQWIPVSWLAKE  282 (330)
Q Consensus       223 ~e~~~rl~~~~~~ie~~~~~~fD~vI~N~dl-e~a~~~L~~~i~~~~~~~~WvP~sw~~~~  282 (330)
                      ++.++++.+++.+++.+|.|+||++|+|||+ ++||++|+++|..++++|||||++|+...
T Consensus       328 ee~~~r~~~~a~~~e~~~~~~fD~vIvNddl~d~a~~~L~~ii~~~~~~~~WvP~~~~~~~  388 (468)
T 3shw_A          328 RKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSEGKADGA  388 (468)
T ss_dssp             CCCHHHHHHHHHHHHHHHGGGCSEEEECBTTBCHHHHHHHHHHHHHHTSCEEEEC------
T ss_pred             HHHHHHHHHHHHHHHHhhhccCCEEEECCCcHHHHHHHHHHHHHHhcCCCEEeCCcccccc
Confidence            5677888888888999999999999999999 59999999999999999999999999765

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=100.00  E-value=4.1e-52  Score=407.53  Aligned_cols=241  Identities=24%  Similarity=0.328  Sum_probs=187.6

Q ss_pred             CcEEEeC---CCCCceeEEeCCCC---CCceeeCChhHHHHHHhhcccc-ccccc---ccccc-ccccccc-cccchhhh
Q psy933            1 MFQIISK---DDHNWWQARKDNVA---GSAGLIPSPELQEWRTACSTID-KTKHE---QVNCS-IFGRKKK-LYKDKYLA   68 (330)
Q Consensus         1 iL~v~~~---~D~~WWQA~~~~~~---~~~GlIPS~~~~e~r~~~~~~~-~~~~~---~~~~~-~~~rk~k-~~~~~~~~   68 (330)
                      ||||+++   +|++||||++.+..   ..+|+|||+.++|++.+++... .....   ...|. .++++++ .++.  ..
T Consensus       130 il~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~--~~  207 (391)
T 3tsz_A          130 VFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKS--RE  207 (391)
T ss_dssp             EEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHHHHHSSCCC--------------------------------
T ss_pred             EEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHHHHHHHHhhhccccccccccccccccccccccccccc--cc
Confidence            6999999   79999999996543   3689999999999987664321 11111   11111 0111111 1111  12


Q ss_pred             ccccccCCccccCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEeccc
Q psy933           69 KHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHD  148 (330)
Q Consensus        69 ~~~~~~~~~~~~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~  148 (330)
                      ..+..++..++++||+|++++++.+|||||+||||   +||+++|++.+|+.|..    |||+||+||+||++||||   
T Consensus       208 ~~~~~~~~~~~~~YE~V~~~~~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~----~tr~pR~gE~dG~~Y~Fv---  277 (391)
T 3tsz_A          208 DLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIA---DVAREKLAREEPDIYQI----AKSEPRDAGTDQRSSGII---  277 (391)
T ss_dssp             ---------CCCSEEEEEEEECSSCCCEEEESTTH---HHHHHHHHHHCTTTEEE----CCCCCCCSSSCCC--CCC---
T ss_pred             ccccccccccCCCcceEECcCCCCCCEEEEECCCH---HHHHHHHHhhCcccccc----ccCCCCCcccCCccCCcC---
Confidence            23445667789999999999998999999999997   89999999999998865    689999999999999997   


Q ss_pred             chhhHHhccceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------
Q psy933          149 EMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------  220 (330)
Q Consensus       149 ~f~~~i~~~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------  220 (330)
                                              ++++|++++++|++|||||+++|+++|+...++|++|||+|||+++|+        
T Consensus       278 ------------------------~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~~  333 (391)
T 3tsz_A          278 ------------------------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCP  333 (391)
T ss_dssp             ------------------------CHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHHCS
T ss_pred             ------------------------cHHHHHHHHHcCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcCCC
Confidence                                    689999999999999999999999999999999999999999999987        


Q ss_pred             CchHHHHHHHHHHHHHHhhccccceEEEecCCHH-HHHHHHHHHHHHhcCCCcccccc
Q psy933          221 DYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIE-ETIGILEKAIEELHTTPQWIPVS  277 (330)
Q Consensus       221 ~~~e~~~rl~~~~~~ie~~~~~~fD~vI~N~dle-~a~~~L~~~i~~~~~~~~WvP~s  277 (330)
                      ++++.++++.+++.++|.+|.|+||++|+|||++ .||++|+++|..++++|||||..
T Consensus       334 ~s~e~~~~~~~~a~~~e~~~~~~fd~vivNd~l~~~a~~~l~~ii~~~~~~~~Wvp~~  391 (391)
T 3tsz_A          334 ESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSEG  391 (391)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHHHHHSEEEEEC-
T ss_pred             CCHHHHHHHHHHHHHHHHhccccCcEEEECCCcHHHHHHHHHHHHHHhcCCCeeccCC
Confidence            3455678888888889999999999999999998 79999999999999999999963

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=100.00  E-value=2.2e-48  Score=345.03  Aligned_cols=173  Identities=29%  Similarity=0.574  Sum_probs=161.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTK  173 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts  173 (330)
                      |||||+|||||||+||+++|++.+|+.|..+++||||+||+||++|+||||||+++|++++++|.|+||++++||+|||+
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~   81 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST   81 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEEEeCHHHHHHHHhc-CCCCEEEEEccCcccccc--------CchHHH-HHHHHHHHHHHhhcccc
Q psy933          174 LETIRRIHQEGKIAILDVEPQALKILRTG-EFSPFVVFIAAPQLQNLS--------DYDGSL-EKLAKESDILKSAYEHF  243 (330)
Q Consensus       174 ~~~i~~v~~~gk~~vldv~~~~v~~L~~~-~~~p~vIfI~pps~~~l~--------~~~e~~-~rl~~~~~~ie~~~~~~  243 (330)
                      +++|++++++|++||++++++|++++++. .+.+++|||.|||.++|+        ++++.+ +||..+..+|+..+.+.
T Consensus        82 ~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~~~~~  161 (186)
T 1ex7_A           82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGA  161 (186)
T ss_dssp             HHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccC
Confidence            99999999999999999999999999985 568999999999999885        345666 57888888887666788


Q ss_pred             ceEEEecCCHHHHHHHHHHHHHH
Q psy933          244 FDLTVVNNDIEETIGILEKAIEE  266 (330)
Q Consensus       244 fD~vI~N~dle~a~~~L~~~i~~  266 (330)
                      ||++|+|||+++|+++|.++|..
T Consensus       162 fD~vIvNddle~a~~~l~~iI~a  184 (186)
T 1ex7_A          162 HDKVIVNDDLDKAYKELKDFIFA  184 (186)
T ss_dssp             SSEEEECSSHHHHHHHHHHHHTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHHh
Confidence            99999999999999999999863

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=100.00  E-value=9.4e-48  Score=364.09  Aligned_cols=242  Identities=21%  Similarity=0.312  Sum_probs=175.5

Q ss_pred             CcEEEeCCCCC---------ceeEEeCCCC---CCceeeCChhHHHHHHhhcccccc------c--cccccccccccccc
Q psy933            1 MFQIISKDDHN---------WWQARKDNVA---GSAGLIPSPELQEWRTACSTIDKT------K--HEQVNCSIFGRKKK   60 (330)
Q Consensus         1 iL~v~~~~D~~---------WWQA~~~~~~---~~~GlIPS~~~~e~r~~~~~~~~~------~--~~~~~~~~~~rk~k   60 (330)
                      ||||+++.|++         ||||++.+..   ...|+|||+.++|++...+.....      +  ....+.++|++|.+
T Consensus        28 il~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~aeq~~~~~~~~~~~~~~~~~~~~~~~r~~f~~~~~~  107 (308)
T 3kfv_A           28 VFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGL  107 (308)
T ss_dssp             EEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHHHHHHHHHHHCC-----------------------
T ss_pred             EEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHHHHHHHHHhhhhcccccccccccccccchhhhccc
Confidence            69999999988         9999996543   478999999999987554322111      0  01122233433221


Q ss_pred             c---ccchhhhccccc--cCCccccCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933           61 L---YKDKYLAKHNAV--FDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD  135 (330)
Q Consensus        61 ~---~~~~~~~~~~~~--~~~~~~~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~  135 (330)
                      .   ++..+.......  .+..++++||+|++++++.+|||||+||   ||++|+++|++.+|++|++++|.        
T Consensus       108 r~~~k~~~~~~~~d~~~~~~~~~~~~YE~V~~~~~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~--------  176 (308)
T 3kfv_A          108 RRGAKKTTQRSREDLSALTRQGRYPPYERVVLREASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAETV--------  176 (308)
T ss_dssp             ------------CCCHHHHHHHTCCSEEEEEEEECSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC--------
T ss_pred             cccccccccccccccccccccCCCcCchheeccccCCCCeEEEeCc---cHHHHHHHHHHhCcccccccccc--------
Confidence            1   111111111100  1223578999999999999999999999   59999999999999999999882        


Q ss_pred             ccCCeeEEEecccchhhHHhccceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCc
Q psy933          136 EENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQ  215 (330)
Q Consensus       136 E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps  215 (330)
                                     .+++.+|+||            ++++|++++++|++|||||+++|+++|+...++|++|||.|||
T Consensus       177 ---------------~r~i~~~~fi------------s~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS  229 (308)
T 3kfv_A          177 ---------------SRTDSPSKII------------KLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPES  229 (308)
T ss_dssp             -----------------------CC------------CHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCCCEEEEEEESC
T ss_pred             ---------------cccccCCCee------------cHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCCCEEEEEeCCC
Confidence                           1125677776            8999999999999999999999999999999999999999999


Q ss_pred             ccccc--------CchHHHHHHHHHHHHHHhhccccceEEE-ecCCHHHHHHHHHHHHHHhcCCCccccccccc
Q psy933          216 LQNLS--------DYDGSLEKLAKESDILKSAYEHFFDLTV-VNNDIEETIGILEKAIEELHTTPQWIPVSWLA  280 (330)
Q Consensus       216 ~~~l~--------~~~e~~~rl~~~~~~ie~~~~~~fD~vI-~N~dle~a~~~L~~~i~~~~~~~~WvP~sw~~  280 (330)
                      +++|+        ++++.++|+.+++.++|..|+++||++| +|||+++||++|+++|..++++|||||++.+.
T Consensus       230 ~eeL~~rr~R~~~esee~~~r~~~aa~eiE~~~~~~FD~vI~VNDdle~A~~~L~~iI~~~~~epqWvp~~~~~  303 (308)
T 3kfv_A          230 RPALKALRQWLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIWTAEDQLH  303 (308)
T ss_dssp             HHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHGGGCSEEEEECSSSTHHHHHHHHHHHHHTTSEEEEEC----
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhhccCcEEEEcCCCHHHHHHHHHHHHHHhcCCCeEeehhhhh
Confidence            99986        2445678888888889889999999999 99999999999999999999999999998763

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=2.5e-47  Score=341.00  Aligned_cols=184  Identities=51%  Similarity=0.921  Sum_probs=167.5

Q ss_pred             ccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecC
Q psy933           88 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHED  167 (330)
Q Consensus        88 ~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g  167 (330)
                      +|++.+++|+|+||||||||||+++|++.+|+.|..++++|||+||+||++|++|+|+|.++|.+++.++.|+||+++.|
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~   93 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQG   93 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhc
Confidence            56677899999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             ccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhhccccceEE
Q psy933          168 AMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLT  247 (330)
Q Consensus       168 ~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~~~~~fD~v  247 (330)
                      |+|||+.++|++++++|++||||++++|++++++..+.|++|||.|||++...   +..+++.++.++++..|.+.||++
T Consensus        94 n~YGt~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~~~~~---e~~~~i~~r~~~~~~~~~~~fd~v  170 (197)
T 3ney_A           94 NMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQT---EALQQLQKDSEAIRSQYAHYFDLS  170 (197)
T ss_dssp             EEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCBSSCC---HHHHHHHHHHHHHHHHHGGGCSEE
T ss_pred             eecccchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCccccc---hHHHHHHHHHHHHHHhhccCCCEE
Confidence            99999999999999999999999999999999999999999999999986543   334445555566666788999999


Q ss_pred             EecCCHHHHHHHHHHHHHHhcCCCccc
Q psy933          248 VVNNDIEETIGILEKAIEELHTTPQWI  274 (330)
Q Consensus       248 I~N~dle~a~~~L~~~i~~~~~~~~Wv  274 (330)
                      |+|||+++|+++|.++|.+++++||||
T Consensus       171 ivNd~l~~a~~~l~~ii~~~~~~pqWv  197 (197)
T 3ney_A          171 LVNNGVDETLKKLQEAFDQACSSPQWV  197 (197)
T ss_dssp             EEESCHHHHHHHHHHHHHHCCCCCC--
T ss_pred             EECCCHHHHHHHHHHHHHHccCCCCCC
Confidence            999999999999999999999999998

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=100.00  E-value=9.4e-40  Score=311.08  Aligned_cols=241  Identities=18%  Similarity=0.253  Sum_probs=166.6

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhHHHHHHhhccccccccccccccccccccccccchhhhccccccCCcccc
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLV   80 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~~e~r~~~~~~~~~~~~~~~~~~~~rk~k~~~~~~~~~~~~~~~~~~~~   80 (330)
                      ||||++++|++||||++.+.++.+|||||+.+.|+.+..... ..+.+     .+..++ +++.+|  ++     .+.++
T Consensus        69 iL~V~~~~d~~WWqar~~~~~g~~GlIPS~~~~E~~~~~~~~-~~~~~-----~~~~~~-~~~~~~--~k-----~~~~~  134 (337)
T 4dey_A           69 FLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQ-RAKEF-----KLHSKE-KRMPFF--KK-----TEHTP  134 (337)
T ss_dssp             EEEEEEECSSSEEEEEESSTTCCCEEEECHHHHHHHHHHHHH-HCC--------------------------------CC
T ss_pred             EEEEEecCCCCeEEEEECCCCCCccEecCHHHHHHHHHhhhh-ccccC-----CCCccc-cccccc--cc-----CCCCC
Confidence            699999999999999998777789999999998876544321 11111     111111 122232  11     24678


Q ss_pred             CceeeecccCCCCCEEEEEcCCCccHH---HHHHHHHhhCCCCccccccccccCCCCcccCCeeE--EEecccchhhHHh
Q psy933           81 TYEEVVKLPSFKRKTLVLLGAHGVGRR---HIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAY--YFISHDEMMSDIA  155 (330)
Q Consensus        81 ~Ye~V~~~~~~~~r~ivLvGpsGvGKs---tL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy--~fvs~~~f~~~i~  155 (330)
                      +||+|..|     |||||+||+++|-.   .+.++|+..++++|.++|++| |.++..+..+..+  +++++..|++.+.
T Consensus       135 ~Ye~vp~~-----RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~t-R~~~d~~~~~r~~~~~~~~~~~~e~~~~  208 (337)
T 4dey_A          135 PYDVVPSM-----RPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT-RVTADISLAKRSVLNNPSKHAIIERSNT  208 (337)
T ss_dssp             SEEEECSS-----CCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEE-EECSCGGGC-------------------
T ss_pred             CccccCCC-----CceEEECCccccchhHHHHHHHHHHhhHHhcCCccceE-eecchhhhcchhhhhcccchhhhccccc
Confidence            99999644     89999999999965   367889999999999999765 9998888888875  6778888888888


Q ss_pred             ccceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHH-HHHHHHhcCCCCEEEEEccCccccccCc--------hHHH
Q psy933          156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSPFVVFIAAPQLQNLSDY--------DGSL  226 (330)
Q Consensus       156 ~~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~-~v~~L~~~~~~p~vIfI~pps~~~l~~~--------~e~~  226 (330)
                      .+.|+|        |++..+.|.++.++|++||||||++ |+++|++..+.|++|||.|||+++|++.        ++.+
T Consensus       209 ~~~~~e--------v~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~~~~rl  280 (337)
T 4dey_A          209 RSSLAE--------VQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHL  280 (337)
T ss_dssp             CCCHHH--------HHHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHHHHTTH
T ss_pred             ccchHH--------HHhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCchHHHHH
Confidence            888876        4467777777888999999999998 9999999999999999999999998631        1222


Q ss_pred             HHHHHHHHHHHhhccccceEEEecCCHHHHHHHHHHHHHHhcC
Q psy933          227 EKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHT  269 (330)
Q Consensus       227 ~rl~~~~~~ie~~~~~~fD~vI~N~dle~a~~~L~~~i~~~~~  269 (330)
                      ++..+.+++..+.|.+.||++|+|||+++||++|.++|.....
T Consensus       281 ~~al~~ae~E~~~~~~~FDyvIVNDdLe~A~~~L~~iI~~~~~  323 (337)
T 4dey_A          281 NVQMVAADKLAQCPPELFDVILDENQLEDACEHLADYLEAYWK  323 (337)
T ss_dssp             HHHHHHHHHHHHSCGGGCSEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcccCCEEEECCCHHHHHHHHHHHHHHHHh
Confidence            3222233443456789999999999999999999999977543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=100.00  E-value=8.6e-38  Score=273.46  Aligned_cols=178  Identities=70%  Similarity=1.146  Sum_probs=163.8

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcc
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAM  169 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~  169 (330)
                      |+++++++|+||||||||||++.|...+|..+..+++||||+|+.+|.+|++|+|++.++|..++.++.|++++++.+|+
T Consensus         2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~   81 (180)
T 1kgd_A            2 SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAM   81 (180)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCcc
Confidence            35678999999999999999999999988678899999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhhccccceEEEe
Q psy933          170 YGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVV  249 (330)
Q Consensus       170 YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~~~~~fD~vI~  249 (330)
                      ||++.+++++++++|++||++++++|++.++...+.+++|||.||+.+.|+..++.++|+.++...++..|.++||++|+
T Consensus        82 yg~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l~~R~~~i~r~~~~~~~~~~~~~~~~d~~i~  161 (180)
T 1kgd_A           82 YGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDILQRTYAHYFDLTII  161 (180)
T ss_dssp             EEEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTSCCSHHHHHHHHHHHHHHHHHGGGCSEEEE
T ss_pred             ccccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHHHhhHHHHHHHHHHHHHHHHhhhCCCcEEEE
Confidence            99999999999999999999999999999998878899999999999999887888899988877787678899999999


Q ss_pred             cCCHHHHHHHHHHHHHHh
Q psy933          250 NNDIEETIGILEKAIEEL  267 (330)
Q Consensus       250 N~dle~a~~~L~~~i~~~  267 (330)
                      |+++++|+++|.++|.++
T Consensus       162 n~~~~~~~~~l~~~i~~~  179 (180)
T 1kgd_A          162 NNEIDETIRHLEEAVELV  179 (180)
T ss_dssp             CSSHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHh
Confidence            999999999999999875

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=100.00  E-value=6.3e-34  Score=254.56  Aligned_cols=175  Identities=25%  Similarity=0.437  Sum_probs=157.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      .+++|+|+||||||||||++.|+..+|..|...+++|||+|+.+|.+|++|+|++.+.|..++.++.|++++++.||+||
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg   86 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG   86 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence            45799999999999999999999999867999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC--------chHHH-HHHHHHHHHHHhhccc
Q psy933          172 TKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD--------YDGSL-EKLAKESDILKSAYEH  242 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~--------~~e~~-~rl~~~~~~ie~~~~~  242 (330)
                      ++.+.+++++++|++||+|++++++..++.....+++||+.|||.+.|++        .++++ +||..+..++  .+.+
T Consensus        87 ~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~--~~~~  164 (208)
T 3tau_A           87 TPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEI--EMMA  164 (208)
T ss_dssp             EEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHH--HHGG
T ss_pred             CcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--Hhhc
Confidence            99999999999999999999999999999999999999999999888752        23445 4565554433  4678


Q ss_pred             cceEEEecCCHHHHHHHHHHHHHHhc
Q psy933          243 FFDLTVVNNDIEETIGILEKAIEELH  268 (330)
Q Consensus       243 ~fD~vI~N~dle~a~~~L~~~i~~~~  268 (330)
                      .||++|+|+++++++++|..+|....
T Consensus       165 ~~d~vivN~~~~~~~~~l~~~i~~~~  190 (208)
T 3tau_A          165 SYDYAVVNDVVANAVQKIKGIVETEH  190 (208)
T ss_dssp             GSSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHHHHH
Confidence            89999999999999999999997653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.98  E-value=1.1e-31  Score=238.62  Aligned_cols=177  Identities=23%  Similarity=0.472  Sum_probs=155.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      .+++|+|+||||||||||+++|.+.+|..|..+++||||+||.+|.+|.+|+|++.++|..++.+|.|++++++.|++||
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYG   90 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCeec
Confidence            45799999999999999999999998755889999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCC--CCEEEEEccCcccccc--------CchHHHH-HHHHHHHHHHhhc
Q psy933          172 TKLETIRRIHQEGKIAILDVEPQALKILRTGEF--SPFVVFIAAPQLQNLS--------DYDGSLE-KLAKESDILKSAY  240 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~--~p~vIfI~pps~~~l~--------~~~e~~~-rl~~~~~~ie~~~  240 (330)
                      ++.+.++.+++.|+.||+|+++++++.++....  .+++|||.|++.+.+.        +.++.++ |+......+...|
T Consensus        91 ~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~  170 (204)
T 2qor_A           91 TLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEAD  170 (204)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999988765  6899999988887764        2344553 5665555554226


Q ss_pred             cccceEEEecCCHHHHHHHHHHHHHHhc
Q psy933          241 EHFFDLTVVNNDIEETIGILEKAIEELH  268 (330)
Q Consensus       241 ~~~fD~vI~N~dle~a~~~L~~~i~~~~  268 (330)
                      ...||++|+|+++++++++|.++|....
T Consensus       171 ~~~~d~vi~n~~~e~~~~~i~~~i~~~~  198 (204)
T 2qor_A          171 KVGFNYFIVNDDLARTYAELREYLLGSY  198 (204)
T ss_dssp             HHTCSEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             hccCcEEEECcCHHHHHHHHHHHHHHHh
Confidence            7889999999999999999999998653

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.97  E-value=3.5e-30  Score=233.37  Aligned_cols=174  Identities=25%  Similarity=0.412  Sum_probs=155.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCC-CccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPD-KYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY  170 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~-~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y  170 (330)
                      .+++++|+||||||||||++.|+...|. .+.+.+++|||+|+++|.+|++|+|++.+.|..+...|.|+|+.++.+++|
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y   94 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY   94 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence            4589999999999999999999999873 588899999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHH-HHHHHHHHHHHhhcc
Q psy933          171 GTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSL-EKLAKESDILKSAYE  241 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~-~rl~~~~~~ie~~~~  241 (330)
                      |++.+.|+++++.|++||||+|+++.+.++.....+.+|||.+|+++.+.        ++.+++ +|+..+..++  .+.
T Consensus        95 g~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~--~~~  172 (219)
T 1s96_A           95 GTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEM--SHY  172 (219)
T ss_dssp             EEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHH--TTG
T ss_pred             CCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--hhc
Confidence            99999999999999999999999999999987778899999999988764        244555 4676665555  467


Q ss_pred             ccceEEEecCCHHHHHHHHHHHHHHh
Q psy933          242 HFFDLTVVNNDIEETIGILEKAIEEL  267 (330)
Q Consensus       242 ~~fD~vI~N~dle~a~~~L~~~i~~~  267 (330)
                      +.||++|+|+|+++|+++|..+|...
T Consensus       173 ~~~d~~i~Nd~l~~a~~~l~~ii~~~  198 (219)
T 1s96_A          173 AEYDYLIVNDDFDTALTDLKTIIRAE  198 (219)
T ss_dssp             GGSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHHHH
Confidence            88999999999999999999999764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.97  E-value=1.7e-30  Score=230.84  Aligned_cols=175  Identities=30%  Similarity=0.634  Sum_probs=153.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGT  172 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGt  172 (330)
                      +++++|+||||||||||++.|...+|..|+..++||||+|+.|+++|.+|+|++.++|.+++.++.|++++++.+|+||+
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g~   83 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGT   83 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCCC
Confidence            57899999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHHH-HHHHHHHHHHhh-ccc
Q psy933          173 KLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSLE-KLAKESDILKSA-YEH  242 (330)
Q Consensus       173 s~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~~-rl~~~~~~ie~~-~~~  242 (330)
                      +.+.++++++.|+.|+++++++|+..++...+.|.++||++|+...|.        ++++.++ +|......+... +.+
T Consensus        84 ~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~~~  163 (198)
T 1lvg_A           84 SKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPG  163 (198)
T ss_dssp             EHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGSTT
T ss_pred             CHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccC
Confidence            999999999999999999999999998887788999999999987764        2344553 455544444322 237


Q ss_pred             cceEEEecCCHHHHHHHHHHHHHHh
Q psy933          243 FFDLTVVNNDIEETIGILEKAIEEL  267 (330)
Q Consensus       243 ~fD~vI~N~dle~a~~~L~~~i~~~  267 (330)
                      .||++|+|+++++|+++|.++|...
T Consensus       164 ~~D~iivnd~le~a~~~l~~ii~~~  188 (198)
T 1lvg_A          164 LFDLVIINDDLDKAYATLKQALSEE  188 (198)
T ss_dssp             TCSEEEECSSHHHHHHHHHHHTHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHHHH
Confidence            8999999999999999999999764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.93  E-value=1e-24  Score=192.06  Aligned_cols=172  Identities=22%  Similarity=0.404  Sum_probs=151.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGT  172 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGt  172 (330)
                      +..|+|+||+|||||||++.|...+| .+.....++||+++.++.+|+.|+|.+...|..+...+.|++++.+.++.||+
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKALA-EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT   85 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSS-SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC-CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence            57999999999999999999999988 58888899999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHH-HHHHHHHHHHHhhcccc
Q psy933          173 KLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSL-EKLAKESDILKSAYEHF  243 (330)
Q Consensus       173 s~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~-~rl~~~~~~ie~~~~~~  243 (330)
                      +.+.+.++++.|+.|+++++++++..++.....+.+||+.||+.+.+.        +.++.+ +||..+...+  .+...
T Consensus        86 ~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~--~~~~~  163 (205)
T 3tr0_A           86 EKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEM--AHYKE  163 (205)
T ss_dssp             EHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHH--TTGGG
T ss_pred             hHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--hcccC
Confidence            999999999999999999999999999998889999999999877663        123333 4565554433  45688


Q ss_pred             ceEEEecCCHHHHHHHHHHHHHHh
Q psy933          244 FDLTVVNNDIEETIGILEKAIEEL  267 (330)
Q Consensus       244 fD~vI~N~dle~a~~~L~~~i~~~  267 (330)
                      ||++|+|+++++++++|..+|...
T Consensus       164 ~d~vi~n~~~~~~~~~l~~~i~~~  187 (205)
T 3tr0_A          164 FDYLVVNDNFDQAVQNLIHIISAE  187 (205)
T ss_dssp             CSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.93  E-value=1.7e-25  Score=202.07  Aligned_cols=175  Identities=21%  Similarity=0.321  Sum_probs=142.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHH-hhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLI-NKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY  170 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~-~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y  170 (330)
                      .+.+|+|+||+|||||||++.|. ..+| .+...+++|||+|+.|+++|.+|+|++...|..+...+.|++++++.++.|
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQKN-NIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFY  104 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC-----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCCC-CcccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccccC
Confidence            46799999999999999999999 8887 488899999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcC-CCCEEEEEccCccccccC--------chHHH-HHHHHHHHHHHhhc
Q psy933          171 GTKLETIRRIHQEGKIAILDVEPQALKILRTGE-FSPFVVFIAAPQLQNLSD--------YDGSL-EKLAKESDILKSAY  240 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~-~~p~vIfI~pps~~~l~~--------~~e~~-~rl~~~~~~ie~~~  240 (330)
                      |++...++++++.|+.|++++++.+...++... ..+.+||+.+|+.+.+.+        ..+.+ ++|......+  .+
T Consensus       105 ~~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~--~~  182 (231)
T 3lnc_A          105 GVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEI--SH  182 (231)
T ss_dssp             EEECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC--------------CHHHHHHHH--TT
T ss_pred             CCCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--hh
Confidence            999999999999999999999999999998866 567899999998776642        22333 3444444333  35


Q ss_pred             cccceEEEecCCHHHHHHHHHHHHHHhcC
Q psy933          241 EHFFDLTVVNNDIEETIGILEKAIEELHT  269 (330)
Q Consensus       241 ~~~fD~vI~N~dle~a~~~L~~~i~~~~~  269 (330)
                      .+.||+||+|+++++++++|..+|.....
T Consensus       183 ~~~~d~vI~n~~~e~~~~~l~~~i~~~~~  211 (231)
T 3lnc_A          183 CEAYDYVIVNEDIEETADRISNILRAEQM  211 (231)
T ss_dssp             GGGSSEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             hcCCeEEEECcCHHHHHHHHHHHHHHHhh
Confidence            67899999999999999999999987654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.91  E-value=4.7e-23  Score=185.60  Aligned_cols=175  Identities=24%  Similarity=0.458  Sum_probs=149.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      .+.+++|+||||||||||++.|+..+|..+...+++|||+|+.++.+|++|.|.+...|..+...+.|++++++.++.||
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g  101 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYG  101 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccCC
Confidence            46799999999999999999999988744555789999999999999999999999999999889999999999999999


Q ss_pred             ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcC--CCCEEEEEccCccccccC--------chHHHH-HHHHHHHHHHhhc
Q psy933          172 TKLETIRRIHQEGKIAILDVEPQALKILRTGE--FSPFVVFIAAPQLQNLSD--------YDGSLE-KLAKESDILKSAY  240 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~--~~p~vIfI~pps~~~l~~--------~~e~~~-rl~~~~~~ie~~~  240 (330)
                      ++...++++++.++.+++++++.|.+++|...  ..|..+|+.+|++..|.+        .++.+. ++......+.  +
T Consensus       102 ~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~--~  179 (218)
T 1z6g_A          102 TLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH--E  179 (218)
T ss_dssp             EEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH--H
T ss_pred             CcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--h
Confidence            99999999999999999999999999998776  678999999998877642        334443 4444333332  3


Q ss_pred             c--ccceEEEecCCHHHHHHHHHHHHHHhc
Q psy933          241 E--HFFDLTVVNNDIEETIGILEKAIEELH  268 (330)
Q Consensus       241 ~--~~fD~vI~N~dle~a~~~L~~~i~~~~  268 (330)
                      .  ..||.+|+|+|+++|++.+..+|....
T Consensus       180 ~h~~~~d~iiv~~~~~ea~~~~~~ii~~~~  209 (218)
T 1z6g_A          180 ANLLNFNLSIINDDLTLTYQQLKNYLLNSY  209 (218)
T ss_dssp             HTTSCCSEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             hcccCCCEEEECCCHHHHHHHHHHHHHHHH
Confidence            3  689999999999999999999998754

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.87  E-value=2e-21  Score=170.84  Aligned_cols=174  Identities=25%  Similarity=0.480  Sum_probs=136.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC-CCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF-PDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY  170 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~-p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y  170 (330)
                      .+..|+|+||+|||||||++.|...+ | .+...+.++||+|+.++.+|.+|+|.+.+.|..++.++.++++..+.+++|
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDPST-SYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY   83 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCTTC-CEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCC-CeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence            45799999999999999999999887 5 355578899999998899999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC--------chHHH-HHHHHHHHHHHhhcc
Q psy933          171 GTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD--------YDGSL-EKLAKESDILKSAYE  241 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~--------~~e~~-~rl~~~~~~ie~~~~  241 (330)
                      |++.+.++.+++.|+.+|+|+...+...++.....+++||+.||+.+.+.+        .++.+ +++......  ..+.
T Consensus        84 g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~--~~~~  161 (207)
T 2j41_A           84 GTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKE--VEMM  161 (207)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC---------------------------CG--GGGG
T ss_pred             CCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--Hhcc
Confidence            999999999999999999999988888888765678999999887655432        11222 223222222  2344


Q ss_pred             ccceEEEecCCHHHHHHHHHHHHHHhc
Q psy933          242 HFFDLTVVNNDIEETIGILEKAIEELH  268 (330)
Q Consensus       242 ~~fD~vI~N~dle~a~~~L~~~i~~~~  268 (330)
                      ..+|++|+|+++++++++|.+++....
T Consensus       162 ~~~d~vI~n~~~e~~~~~i~~~l~~~~  188 (207)
T 2j41_A          162 NLYDYVVVNDEVELAKNRIQCIVEAEH  188 (207)
T ss_dssp             GGCSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHHHhh
Confidence            678999999999999999999997653

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.74  E-value=7.5e-17  Score=143.20  Aligned_cols=172  Identities=24%  Similarity=0.373  Sum_probs=140.2

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecC--c
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHED--A  168 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g--~  168 (330)
                      ..+.+++|+||+|||||||++.|....+. +...+.+|+|+|+.++..|+.|.|.+...|..+...+.|+++.++.+  +
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~~-i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~   96 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLH   96 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHSTT-CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCc-eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchh
Confidence            35689999999999999999999998874 55568899999988888999999999999998888899999998888  7


Q ss_pred             cccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccCc--------hHHH-HHHHHHHHHHHhh
Q psy933          169 MYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDY--------DGSL-EKLAKESDILKSA  239 (330)
Q Consensus       169 ~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~--------~e~~-~rl~~~~~~ie~~  239 (330)
                      +||++...+++.++++..++++++..++..++......+.+++..|+...|-+.        +... +++.+...++.. 
T Consensus        97 ~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~-  175 (207)
T 1znw_A           97 RSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAA-  175 (207)
T ss_dssp             EEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHG-
T ss_pred             hcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-
Confidence            899999999999999999999999999998888888888899998877655321        2223 345444444432 


Q ss_pred             ccccceEEEecCCHHHHHHHHHHHHH
Q psy933          240 YEHFFDLTVVNNDIEETIGILEKAIE  265 (330)
Q Consensus       240 ~~~~fD~vI~N~dle~a~~~L~~~i~  265 (330)
                       .+.++.++++.|++++......++-
T Consensus       176 -~~g~tvi~vtHdl~~~~~~~d~i~~  200 (207)
T 1znw_A          176 -QGDFDKVVVNRRLESACAELVSLLV  200 (207)
T ss_dssp             -GGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred             -hccCcEEEECCCHHHHHHHHHHHHH
Confidence             3458999999999999887776654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=99.42  E-value=3.7e-14  Score=134.44  Aligned_cols=99  Identities=14%  Similarity=0.232  Sum_probs=82.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCC--------ccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEe
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDK--------YAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGT  164 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~--------f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~  164 (330)
                      +++|+|+||||||||+|+.+|++.++..        +...+++||++|+++|.+|++|||++..+|.+.+..+.|.+.+ 
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a-   81 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA-   81 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH-
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH-
Confidence            4588999999999999999999988742        3556899999999999999999999999999888888776554 


Q ss_pred             ecCccccccHHHHHHHHHhCCeEEEEeCHH-HHHHHHh
Q psy933          165 HEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRT  201 (330)
Q Consensus       165 ~~g~~YGts~~~i~~v~~~gk~~vldv~~~-~v~~L~~  201 (330)
                               ...|+++.++|+++||.-... =++.|-.
T Consensus        82 ---------~~~i~~i~~~gk~pIlVGGTglYi~aLl~  110 (322)
T 3exa_A           82 ---------TPLITEIHERGRLPFLVGGTGLYVNAVIH  110 (322)
T ss_dssp             ---------HHHHHHHHHTTCEEEEESCCHHHHHHHHH
T ss_pred             ---------HHHHHHHHhCCCcEEEEcCcHHHHHHHHc
Confidence                     889999999999999865432 2455543

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=99.42  E-value=1.3e-13  Score=132.03  Aligned_cols=89  Identities=19%  Similarity=0.287  Sum_probs=76.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC--------CccccccccccCCCCcccCCeeEEEecccch-hhHHhccceeeEE
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD--------KYAYPVPHTTRSPRSDEENGRAYYFISHDEM-MSDIAANQYLEYG  163 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~--------~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f-~~~i~~~~fle~~  163 (330)
                      +++|+|+||+|||||+|+..|++.++.        .+...+++||++|+.+|.+|++|||++..++ .+....+.|.+..
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~a  119 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSLA  119 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHHH
Confidence            358999999999999999999998863        2445689999999999999999999999999 7778888888765


Q ss_pred             eecCccccccHHHHHHHHHhCCeEEEEe
Q psy933          164 THEDAMYGTKLETIRRIHQEGKIAILDV  191 (330)
Q Consensus       164 ~~~g~~YGts~~~i~~v~~~gk~~vldv  191 (330)
                                ...|+++.+.|+.+|+.-
T Consensus       120 ----------~~~i~~i~~~g~~pIlvG  137 (339)
T 3a8t_A          120 ----------GKAVSEITGRRKLPVLVG  137 (339)
T ss_dssp             ----------HHHHHHHHHTTCEEEEEC
T ss_pred             ----------HHHHHHHHhcCCeEEEEc
Confidence                      677888888999988863

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=99.40  E-value=4e-14  Score=133.98  Aligned_cols=99  Identities=17%  Similarity=0.202  Sum_probs=83.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCC--------CccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPD--------KYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG  163 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~--------~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~  163 (330)
                      ++++|+|+||||||||+|+..|++.++.        .+...+++||++|+++|.+|++|||++..++.+....+.|.+.+
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a   88 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDA   88 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHH
Confidence            4568999999999999999999999874        24556899999999999999999999999999888888776654


Q ss_pred             eecCccccccHHHHHHHHHhCCeEEEEeCHH-HHHHHH
Q psy933          164 THEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILR  200 (330)
Q Consensus       164 ~~~g~~YGts~~~i~~v~~~gk~~vldv~~~-~v~~L~  200 (330)
                                ...|+++.+.|+++||.-... =++.|-
T Consensus        89 ----------~~~i~~i~~~g~~pilVGGTglYi~all  116 (316)
T 3foz_A           89 ----------LAEMADITAAGRIPLLVGGTMLYFKALL  116 (316)
T ss_dssp             ----------HHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             ----------HHHHHHHHhCCCcEEEEcCcHHHHHHHH
Confidence                      788999999999998875442 245554

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=99.38  E-value=7.5e-14  Score=136.45  Aligned_cols=88  Identities=24%  Similarity=0.386  Sum_probs=79.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCC--------ccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEee
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDK--------YAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTH  165 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~--------f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~  165 (330)
                      ++|+|+||||||||+|+.+|++.++..        +...+++||++|+++|.+|++|||++..+|.+++..+.|++++  
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a--   80 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETEC--   80 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHH--
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHH--
Confidence            579999999999999999999987642        4455899999999999999999999999999999999999987  


Q ss_pred             cCccccccHHHHHHHHHhCCeEEEEe
Q psy933          166 EDAMYGTKLETIRRIHQEGKIAILDV  191 (330)
Q Consensus       166 ~g~~YGts~~~i~~v~~~gk~~vldv  191 (330)
                              ...|+++.+.|+++||.-
T Consensus        81 --------~~~i~~i~~~g~~pilVG   98 (409)
T 3eph_A           81 --------MNAIEDIHRRGKIPIVVG   98 (409)
T ss_dssp             --------HHHHHHHHTTTCEEEEEC
T ss_pred             --------HHHHHHHHhcCCCEEEEC
Confidence                    889999999999999854

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.34  E-value=1.7e-13  Score=128.31  Aligned_cols=159  Identities=11%  Similarity=0.150  Sum_probs=104.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccc-cccCCCCcccCCeeEEEecccchhhHHhccceeeEE-eecCcc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPH-TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG-THEDAM  169 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~-TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~-~~~g~~  169 (330)
                      ++..|+|+||||||||||+++|.+.++.. ...|+. ++|.++++              |..++..  |.++. ++.+++
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~~~-~~~Is~D~~R~~~~~--------------~~~~~~~--~~~~a~~~~~~~   94 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQGN-VIVIDNDTFKQQHPN--------------FDELVKL--YEKDVVKHVTPY   94 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTTC-CEEECTHHHHTTSTT--------------HHHHHHH--HGGGCHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCC-eEEEechHhHHhchh--------------hHHHHHH--ccchhhhhhhHH
Confidence            45689999999999999999999987642 334444 67766554              2222222  44443 445788


Q ss_pred             ccc-cHHHHHHHHHhCCeEEEEeCHHHHH---HH----HhcCCCC-EEEEEccCccccc--c---------------Cch
Q psy933          170 YGT-KLETIRRIHQEGKIAILDVEPQALK---IL----RTGEFSP-FVVFIAAPQLQNL--S---------------DYD  223 (330)
Q Consensus       170 YGt-s~~~i~~v~~~gk~~vldv~~~~v~---~L----~~~~~~p-~vIfI~pps~~~l--~---------------~~~  223 (330)
                      ||+ ....++..++.|+.+|+|.+..+..   .+    +..++.. +++|+.||+...+  .               ..+
T Consensus        95 ~~~~~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~  174 (287)
T 1gvn_B           95 SNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATP  174 (287)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCC
T ss_pred             HHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            998 4577888899999999999875533   32    3334433 3556667765522  1               111


Q ss_pred             -HH----HHHHHHHHHHHHhhccccceEEEecCCH--------HHHHHHHHHHHHHhcC
Q psy933          224 -GS----LEKLAKESDILKSAYEHFFDLTVVNNDI--------EETIGILEKAIEELHT  269 (330)
Q Consensus       224 -e~----~~rl~~~~~~ie~~~~~~fD~vI~N~dl--------e~a~~~L~~~i~~~~~  269 (330)
                       +.    .++|..+...+.  ....||++++|++.        +.+...+.++|.....
T Consensus       175 ~e~~~~i~~rl~~a~~el~--~~~~~d~v~v~d~~g~~ly~~~~~~~~~~~~ii~~e~~  231 (287)
T 1gvn_B          175 KQAHDIVVKNLPTNLETLH--KTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELN  231 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--HHTCCSCEEEECTTCCEEEETTTCTTSCHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHH--cCCCCCeEEEEeCCCCEeeccCCCCCcCHHHHHHHHHc
Confidence             22    245555555553  35789999999864        7777888888887765

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.15  E-value=1.6e-11  Score=122.31  Aligned_cols=52  Identities=23%  Similarity=0.358  Sum_probs=46.0

Q ss_pred             ccccchhhhhhhccceeeEEEEcCCH-HHHHHHHHHHHHHhcCCCceeecccC
Q psy933          278 WLAKESDILKSAYEHFFDLTVVNNDI-EETIGILEKAIEELHTTPQWIPVSWV  329 (330)
Q Consensus       278 w~~~~~~~~e~~y~h~fd~~ivn~~~-~~~~~~l~~~~~~~~~~~qWvp~~w~  329 (330)
                      -+.+.+.+||..|+|+||.||||||+ +.||.+|+++|+.++++|||||++|+
T Consensus       333 r~~~~a~~~e~~~~~~fD~vIvNddl~d~a~~~L~~ii~~~~~~~~WvP~~~~  385 (468)
T 3shw_A          333 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSEGKA  385 (468)
T ss_dssp             HHHHHHHHHHHHHGGGCSEEEECBTTBCHHHHHHHHHHHHHHTSCEEEEC---
T ss_pred             HHHHHHHHHHHhhhccCCEEEECCCcHHHHHHHHHHHHHHhcCCCEEeCCccc
Confidence            45667889999999999999999999 59999999999999999999999997

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=99.12  E-value=2.7e-11  Score=114.47  Aligned_cols=53  Identities=23%  Similarity=0.347  Sum_probs=46.5

Q ss_pred             cccccchhhhhhhccceeeEEE-EcCCHHHHHHHHHHHHHHhcCCCceeecccC
Q psy933          277 SWLAKESDILKSAYEHFFDLTV-VNNDIEETIGILEKAIEELHTTPQWIPVSWV  329 (330)
Q Consensus       277 sw~~~~~~~~e~~y~h~fd~~i-vn~~~~~~~~~l~~~~~~~~~~~qWvp~~w~  329 (330)
                      .-+.+.+.+||..|+|+||.|| |||||+.||.+|+++|..++++|||||++=+
T Consensus       249 ~r~~~aa~eiE~~~~~~FD~vI~VNDdle~A~~~L~~iI~~~~~epqWvp~~~~  302 (308)
T 3kfv_A          249 RRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIWTAEDQL  302 (308)
T ss_dssp             HHHHHHHHHHHHHHGGGCSEEEEECSSSTHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred             HHHHHHHHHHHHhhhccCcEEEEcCCCHHHHHHHHHHHHHHhcCCCeEeehhhh
Confidence            3556677789999999999999 9999999999999999999999999999855

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=99.08  E-value=1.3e-11  Score=117.62  Aligned_cols=91  Identities=14%  Similarity=0.218  Sum_probs=75.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCc--------cccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKY--------AYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG  163 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f--------~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~  163 (330)
                      +++.|+|+||+|||||||+..|++.++..+        ...+++||++|+++|.+|++|||++..++......+.|.+..
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a   83 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA   83 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH
Confidence            446899999999999999999999876322        223688999999999999999999999887777777777664


Q ss_pred             eecCccccccHHHHHHHHHhCCeEEEEeC
Q psy933          164 THEDAMYGTKLETIRRIHQEGKIAILDVE  192 (330)
Q Consensus       164 ~~~g~~YGts~~~i~~v~~~gk~~vldv~  192 (330)
                                ...|+++.+.|+.+|+.-.
T Consensus        84 ----------~~~i~~i~~~g~~~IlvGG  102 (323)
T 3crm_A           84 ----------LAAMAKATARGRIPLLVGG  102 (323)
T ss_dssp             ----------HHHHHHHHHTTCEEEEEES
T ss_pred             ----------HHHHHHHHHcCCeEEEECC
Confidence                      7788889999998888654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.01  E-value=1.5e-10  Score=106.00  Aligned_cols=113  Identities=9%  Similarity=0.070  Sum_probs=77.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCcc--------ccccccccCCCCcccCCeeEEEecccchhh-HHhccceeeEEe
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYA--------YPVPHTTRSPRSDEENGRAYYFISHDEMMS-DIAANQYLEYGT  164 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~--------~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~-~i~~~~fle~~~  164 (330)
                      +.|+|+||+|||||||++.|++..+-.+.        ...+++|++|++.|.+|..|+|++...+.+ ....+.|++   
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~---   78 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHR---   78 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHH---
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHH---
Confidence            47899999999999999999987543221        224678999999999999999998766542 222223322   


Q ss_pred             ecCccccccHHHHHHHHHhCCeEEEEeCH-HHHHHHHh-----cCCCCEEEEEccCccc
Q psy933          165 HEDAMYGTKLETIRRIHQEGKIAILDVEP-QALKILRT-----GEFSPFVVFIAAPQLQ  217 (330)
Q Consensus       165 ~~g~~YGts~~~i~~v~~~gk~~vldv~~-~~v~~L~~-----~~~~p~vIfI~pps~~  217 (330)
                             .....+ ++++.|+.+|++... .-++.+..     ..+...+||+.+|..+
T Consensus        79 -------~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~e  129 (253)
T 2ze6_A           79 -------RLIFEV-DWRKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSD  129 (253)
T ss_dssp             -------HHHHHH-HTTTTSSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHH
T ss_pred             -------HHHHHH-HHHhCCCCeEEeccHHHHHHHHHhcccccccCceEEEEecchhHH
Confidence                   234556 666789998888653 23344333     2345578999988643

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.94  E-value=3.1e-10  Score=110.74  Aligned_cols=49  Identities=24%  Similarity=0.388  Sum_probs=45.6

Q ss_pred             ccccchhhhhhhccceeeEEEEcCCHH-HHHHHHHHHHHHhcCCCceeec
Q psy933          278 WLAKESDILKSAYEHFFDLTVVNNDIE-ETIGILEKAIEELHTTPQWIPV  326 (330)
Q Consensus       278 w~~~~~~~~e~~y~h~fd~~ivn~~~~-~~~~~l~~~~~~~~~~~qWvp~  326 (330)
                      -+.+.|.+||..|+|+||.||||||++ .||.+|+++|+.++++|||||+
T Consensus       341 ~~~~~a~~~e~~~~~~fd~vivNd~l~~~a~~~l~~ii~~~~~~~~Wvp~  390 (391)
T 3tsz_A          341 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSE  390 (391)
T ss_dssp             HHHHHHHHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHHHHHSEEEEEC
T ss_pred             HHHHHHHHHHHhccccCcEEEECCCcHHHHHHHHHHHHHHhcCCCeeccC
Confidence            456677899999999999999999998 7999999999999999999996

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.94  E-value=1.6e-08  Score=85.24  Aligned_cols=135  Identities=11%  Similarity=0.077  Sum_probs=76.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHh-ccceeeEEeecCccccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA-ANQYLEYGTHEDAMYGT  172 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~-~~~fle~~~~~g~~YGt  172 (330)
                      +.|+|+||+||||||++++|.+.+.                       |.|++.+.+..... ...+.            
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~-----------------------~~~i~~d~~~~~~~~~~~~~------------   46 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELK-----------------------YPIIKGSSFELAKSGNEKLF------------   46 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHC-----------------------CCEEECCCHHHHTTCHHHHH------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC-----------------------CeeecCcccccchhHHHHHH------------
Confidence            4799999999999999999988753                       33444444433222 00000            


Q ss_pred             cHHHHHHHHHhCCeEEEEeCH------------------HHHHHHHhcCCC-CEEEEEccCcccccc----------Cch
Q psy933          173 KLETIRRIHQEGKIAILDVEP------------------QALKILRTGEFS-PFVVFIAAPQLQNLS----------DYD  223 (330)
Q Consensus       173 s~~~i~~v~~~gk~~vldv~~------------------~~v~~L~~~~~~-p~vIfI~pps~~~l~----------~~~  223 (330)
                         +....+..|..+++|-..                  .....+...... ..+||+.+| .+.+.          ...
T Consensus        47 ---~~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~-~e~~~~R~~~r~r~~~~~  122 (173)
T 3kb2_A           47 ---EHFNKLADEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHAD-PSVIKKRLRVRGDEYIEG  122 (173)
T ss_dssp             ---HHHHHHTTCCSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECC-HHHHHHHHHHHSCSCCCH
T ss_pred             ---HHHHHHHhCCCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCC-HHHHHHHHHhcCCcchhh
Confidence               111233445555555332                  223333332223 357777765 33332          112


Q ss_pred             HHHHHHHHHHHHHHhhccccceEEEecC--CHHHHHHHHHHHHHHhc
Q psy933          224 GSLEKLAKESDILKSAYEHFFDLTVVNN--DIEETIGILEKAIEELH  268 (330)
Q Consensus       224 e~~~rl~~~~~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~~~  268 (330)
                      +.++++.+..+.....|. ..+++|.++  ++++++++|...+++..
T Consensus       123 ~~~~~~~~~~~~~~~~~~-~~~~~id~~~~~~~ev~~~I~~~~~~~~  168 (173)
T 3kb2_A          123 KDIDSILELYREVMSNAG-LHTYSWDTGQWSSDEIAKDIIFLVELEH  168 (173)
T ss_dssp             HHHHHHHHHHHHHHHTCS-SCEEEEETTTSCHHHHHHHHHHHHHHGG
T ss_pred             hHHHHHHHHHHHHHhhcC-CCEEEEECCCCCHHHHHHHHHHHHhCCC
Confidence            233455554444444454 567888876  89999999999998753

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.93  E-value=5.1e-09  Score=89.30  Aligned_cols=152  Identities=14%  Similarity=0.137  Sum_probs=84.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCcccccc----ccccCCCCc-ccCCeeEEEecccchhhHHhccceeeEEeecC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP----HTTRSPRSD-EENGRAYYFISHDEMMSDIAANQYLEYGTHED  167 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~----~TTR~pr~~-E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g  167 (330)
                      ++.|+|+|||||||||+++.|.+.++..|. +++    +.+++++.+ +.+|.+|.  +         .+.+.. .....
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~-~~~~~   69 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWL-AFGVDSLIEAMPLKMQSAEGGIEFD--A---------DGGVSI-GPEFR   69 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEE-EEEHHHHHHHSCGGGGTSTTSEEEC--T---------TSCEEE-CHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeE-EeccchHhhhcchhhccchhhcccc--C---------CCcccc-chhHH
Confidence            468999999999999999999998764332 212    125555543 33555442  0         011111 01111


Q ss_pred             ccccccHHHHHHHHHhCCeEEEEeCH----HHHHHHHhc--CCCCEEEEEccCccccccCchHHHHHHHHH--------H
Q psy933          168 AMYGTKLETIRRIHQEGKIAILDVEP----QALKILRTG--EFSPFVVFIAAPQLQNLSDYDGSLEKLAKE--------S  233 (330)
Q Consensus       168 ~~YGts~~~i~~v~~~gk~~vldv~~----~~v~~L~~~--~~~p~vIfI~pps~~~l~~~~e~~~rl~~~--------~  233 (330)
                      ..|+.....+...++.|..+|++...    .....++..  ....++||+.+| .+.+.      +|+...        .
T Consensus        70 ~~~~~~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~-~e~l~------~R~~~r~~~~~~~~~  142 (178)
T 1qhx_A           70 ALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCD-GAVAE------GRETARGDRVAGMAA  142 (178)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECC-HHHHH------HHHHHTSSSCTTHHH
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECC-HHHHH------HHHHhhCCcccchhh
Confidence            34555556677788889999998853    212233321  222367888875 44432      222110        1


Q ss_pred             HHHHhhcc-ccceEEEecC--CHHHHHHHHHHHH
Q psy933          234 DILKSAYE-HFFDLTVVNN--DIEETIGILEKAI  264 (330)
Q Consensus       234 ~~ie~~~~-~~fD~vI~N~--dle~a~~~L~~~i  264 (330)
                      ...+..+. ..+|++|.++  +.++++++|.+.+
T Consensus       143 ~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~l  176 (178)
T 1qhx_A          143 KQAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             HHTTGGGTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred             hhchhhccCCCCcEEEECCCCCHHHHHHHHHHHh
Confidence            11111121 2389999876  6888888876543

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.93  E-value=6.8e-09  Score=87.13  Aligned_cols=150  Identities=13%  Similarity=0.172  Sum_probs=81.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecc-cchhhHHhccc-----eeeEEeecC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISH-DEMMSDIAANQ-----YLEYGTHED  167 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~-~~f~~~i~~~~-----fle~~~~~g  167 (330)
                      ..|+|+||+||||||+++.| +.+.  +                     .+++. +.+......+.     +.++....-
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g--~---------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   57 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERG--A---------------------KVIVMSDVVRKRYSIEAKPGERLMDFAKRLR   57 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTT--C---------------------EEEEHHHHHHHHHHHHC---CCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCC--C---------------------cEEEHhHHHHHHHHhcCCChhHHHHHHHHHH
Confidence            47999999999999999999 6542  1                     12221 11222111111     000000000


Q ss_pred             cccc--ccHHHHHHHH--HhCCeEEEEe--CHHHHHHHHhcCCCC-EEEEEccCccccc---cC--------chHHH-HH
Q psy933          168 AMYG--TKLETIRRIH--QEGKIAILDV--EPQALKILRTGEFSP-FVVFIAAPQLQNL---SD--------YDGSL-EK  228 (330)
Q Consensus       168 ~~YG--ts~~~i~~v~--~~gk~~vldv--~~~~v~~L~~~~~~p-~vIfI~pps~~~l---~~--------~~e~~-~r  228 (330)
                      ..+|  .....+.+.+  ..++.+|+|-  .+..+..|+.....| .+||+.+|.-..+   ..        ..+++ ++
T Consensus        58 ~~~~~~~~~~~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r  137 (179)
T 3lw7_A           58 EIYGDGVVARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRR  137 (179)
T ss_dssp             HHHCTTHHHHHHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHH
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHH
Confidence            0011  1123344455  5678888874  355556666544334 5888887742221   11        11222 23


Q ss_pred             HHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933          229 LAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       229 l~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                      +..+...-...|....|++|.|+ ++++++++|..++..+
T Consensus       138 ~~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~  177 (179)
T 3lw7_A          138 DREELKLGIGEVIAMADYIITNDSNYEEFKRRCEEVTDRV  177 (179)
T ss_dssp             HHHHHHHTHHHHHHTCSEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             HHhhhccChHhHHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence            32222211234567889999998 9999999999998865

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.92  E-value=6e-10  Score=106.72  Aligned_cols=88  Identities=18%  Similarity=0.276  Sum_probs=71.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC------Cc--cccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEe
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD------KY--AYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGT  164 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~------~f--~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~  164 (330)
                      ++.|+|+||||||||||+.+|++.++.      .|  ...++++|++|+..|.+|++|||++..++...+..+.|.+.. 
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a-   85 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRA-   85 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHH-
T ss_pred             CceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHH-
Confidence            358999999999999999999998762      22  556789999999999999999999988877666666665543 


Q ss_pred             ecCccccccHHHHHHHHHhCCeEEEE
Q psy933          165 HEDAMYGTKLETIRRIHQEGKIAILD  190 (330)
Q Consensus       165 ~~g~~YGts~~~i~~v~~~gk~~vld  190 (330)
                               ...+.++...|+.+|+.
T Consensus        86 ---------~~~i~~i~~~g~~~Ilv  102 (340)
T 3d3q_A           86 ---------EKYIKDITRRGKVPIIA  102 (340)
T ss_dssp             ---------HHHHHHHHHTTCEEEEE
T ss_pred             ---------HHHHHHHHhCCCcEEEE
Confidence                     66777788888888774

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=98.91  E-value=4.3e-10  Score=105.69  Aligned_cols=50  Identities=16%  Similarity=0.274  Sum_probs=45.7

Q ss_pred             ccccchhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHhcCCCceeecc
Q psy933          278 WLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS  327 (330)
Q Consensus       278 w~~~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~~~~~qWvp~~  327 (330)
                      -+.+++.++|..|+|+||.||+||||++||.+|+++|...+++|||||+.
T Consensus       238 ~~~~r~~k~e~e~~~~fD~vIvNddle~a~~~l~~iI~~e~~~~~WVP~~  287 (292)
T 3tvt_A          238 KTYERAIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSK  287 (292)
T ss_dssp             HHHHHHHHHHHHHTTTCSEEECCSSHHHHHHHHHHHHHHHTCSEEEEEC-
T ss_pred             HHHHHHHHHHHhhhhhCCEEEECcCHHHHHHHHHHHHHHhhCCCeEecCc
Confidence            34566788999999999999999999999999999999999999999973

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=98.90  E-value=4.7e-09  Score=91.38  Aligned_cols=163  Identities=12%  Similarity=0.142  Sum_probs=83.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCcc-ccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYA-YPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~-~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      ++.|+|+|++||||||+++.|.+.++ .+. ..+...+|..+.|+.  ...+|.+...|.....  .+++..    +.| 
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l~-g~~~~~~~~~~~~~~~g~~--i~~~~~~~~~~~~~~~--~~l~~~----~r~-   73 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESIP-ANTIKYLNFPQRSTVTGKM--IDDYLTRKKTYNDHIV--NLLFCA----NRW-   73 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTSC-GGGEEEEESSCTTSHHHHH--HHHHHTSSCCCCHHHH--HHHHHH----HHH-
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHC-CCceEEEecCCCCCcHHHH--HHHHHhcCCCCCHHHH--HHHHHH----HHH-
Confidence            46899999999999999999998763 121 112222221112211  1112222122222111  111111    222 


Q ss_pred             ccHHHHHHHHHhCCeEEEEe--------------CHHHHHHHHhcCCC-CEEEEEccCccccccCc-----h--HHHHHH
Q psy933          172 TKLETIRRIHQEGKIAILDV--------------EPQALKILRTGEFS-PFVVFIAAPQLQNLSDY-----D--GSLEKL  229 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv--------------~~~~v~~L~~~~~~-p~vIfI~pps~~~l~~~-----~--e~~~rl  229 (330)
                      .....+...+.+|..+|+|-              +.+.+..+...... -.+||+..|.-..++..     +  +-.+++
T Consensus        74 ~~~~~i~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~~R~~d~~e~~~~~~rl  153 (204)
T 2v54_A           74 EFASFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINRNVGEEIYEDVTFQQKV  153 (204)
T ss_dssp             TTHHHHHHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTTCCSSSTTCCSHHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHhhcCcccccHHHHHHHH
Confidence            22345677778899999883              33334444433223 36788887632222211     1  223444


Q ss_pred             HHHHHHHHhhccccce-EEEecC-CHHHHHHHHHHHHHHh
Q psy933          230 AKESDILKSAYEHFFD-LTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       230 ~~~~~~ie~~~~~~fD-~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                      ..........+.  .+ .+|.++ ++++.+++|.+++.+.
T Consensus       154 ~~~y~~~~~~~~--~~~~~Id~~~~~~~v~~~i~~~l~~~  191 (204)
T 2v54_A          154 LQEYKKMIEEGD--IHWQIISSEFEEDVKKELIKNIVIEA  191 (204)
T ss_dssp             HHHHHHHHTTCS--SCEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC--CcEEEEECCCCHHHHHHHHHHHHHHH
Confidence            443333322222  24 556555 8999999999998764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.87  E-value=4.4e-09  Score=92.04  Aligned_cols=146  Identities=14%  Similarity=0.147  Sum_probs=81.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchh-----hHHhccceeeEEeecC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-----SDIAANQYLEYGTHED  167 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~-----~~i~~~~fle~~~~~g  167 (330)
                      .+.|+|+||+|||||||++.|.+.+.-                       .+++.+.+.     .....|....     .
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~-----------------------~~i~~d~~~~~~~~~~~~~g~~~~-----~   69 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGY-----------------------PFIEGDALHPPENIRKMSEGIPLT-----D   69 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTC-----------------------CEEEGGGGCCHHHHHHHHHTCCCC-----H
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC-----------------------EEEeCCcCcchhhHHHHhcCCCCC-----c
Confidence            468999999999999999999887521                       122222221     1111222110     0


Q ss_pred             ccccccHHHHHHHHHhCCeEEEEeC---HHHHHHHHhcCCC-CEEEEEccCccccccC----ch---HHHHHHHHHHHHH
Q psy933          168 AMYGTKLETIRRIHQEGKIAILDVE---PQALKILRTGEFS-PFVVFIAAPQLQNLSD----YD---GSLEKLAKESDIL  236 (330)
Q Consensus       168 ~~YGts~~~i~~v~~~gk~~vldv~---~~~v~~L~~~~~~-p~vIfI~pps~~~l~~----~~---e~~~rl~~~~~~i  236 (330)
                      .........+.+.+..|..+|+|..   ......++..... ..+||+.+| .+.+.+    ..   ...+.+....+..
T Consensus        70 ~~~~~~~~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~~~~~~~~~~~~~~~~~  148 (202)
T 3t61_A           70 DDRWPWLAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGS-ESVLAERMHHRTGHFMPSSLLQTQLETL  148 (202)
T ss_dssp             HHHHHHHHHHHHHHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECC-HHHHHHHHHHHHSSCCCHHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCC-HHHHHHHHHHhhccCCCHHHHHHHHHhc
Confidence            0011123456666778899999854   5666667665433 468888876 333221    00   0001111111111


Q ss_pred             HhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933          237 KSAYEHFFDLTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       237 e~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                      +.-+....+++|.++ ++++++++|..+|...
T Consensus       149 ~~~~~~~~~~~Id~~~~~~e~~~~I~~~l~~~  180 (202)
T 3t61_A          149 EDPRGEVRTVAVDVAQPLAEIVREALAGLARL  180 (202)
T ss_dssp             CCCTTSTTEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence            111334467888876 9999999999988754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.86  E-value=8.9e-10  Score=98.04  Aligned_cols=173  Identities=12%  Similarity=0.202  Sum_probs=92.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccC-CCCcccCCeeE-------EEecccchhhHHhccceeeEEe
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS-PRSDEENGRAY-------YFISHDEMMSDIAANQYLEYGT  164 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~-pr~~E~~G~dy-------~fvs~~~f~~~i~~~~fle~~~  164 (330)
                      +..|+|+||+||||||++++|.+.+.- ....+..++|. ++.++..|..+       .+++.+.|...+....+.....
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~~-~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQL-AHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ   83 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCC-EECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC-ceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhcccc
Confidence            357999999999999999999988652 22333334443 22222222211       1444444544333221111000


Q ss_pred             ecCc-ccc--ccHHHHHHHHHh----CCeEEEEeCHHH-HHHHHhcCC-----CCEEEEEccCcccccc--------Cch
Q psy933          165 HEDA-MYG--TKLETIRRIHQE----GKIAILDVEPQA-LKILRTGEF-----SPFVVFIAAPQLQNLS--------DYD  223 (330)
Q Consensus       165 ~~g~-~YG--ts~~~i~~v~~~----gk~~vldv~~~~-v~~L~~~~~-----~p~vIfI~pps~~~l~--------~~~  223 (330)
                      ..|. .+|  .+.+.++.+.+.    +.+.+|+++++. ++++.....     ..+.+|+.||+.+.+.        +..
T Consensus        84 ~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~~  163 (222)
T 1zak_A           84 ENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTE  163 (222)
T ss_dssp             HTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCCT
T ss_pred             CCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCCH
Confidence            1111 223  333444544433    346678888865 566654332     4577888899775432        123


Q ss_pred             HHHH-HHHHHHH---HHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933          224 GSLE-KLAKESD---ILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       224 e~~~-rl~~~~~---~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                      +.++ |+.....   .+...|.. ...+|.++ ++++++++|.++|...
T Consensus       164 ~~i~~Rl~~~~~~~~~l~~~y~~-~~~~Id~~~~~~ev~~~I~~~l~~~  211 (222)
T 1zak_A          164 EKVKLRLETYYQNIESLLSTYEN-IIVKVQGDATVDAVFAKIDELLGSI  211 (222)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCC-CEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-cEEEEECCCCHHHHHHHHHHHHHhh
Confidence            3443 4433322   32223443 34566555 8999999999998754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.84  E-value=1.1e-09  Score=97.18  Aligned_cols=42  Identities=40%  Similarity=0.911  Sum_probs=37.3

Q ss_pred             hhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHhcCCCcee
Q psy933          283 SDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWI  324 (330)
Q Consensus       283 ~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~~~~~qWv  324 (330)
                      +++++..|+|+||.|||||||+.|+.+|+++|.+++++||||
T Consensus       156 ~~~~~~~~~~~fd~vivNd~l~~a~~~l~~ii~~~~~~pqWv  197 (197)
T 3ney_A          156 SEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQWV  197 (197)
T ss_dssp             HHHHHHHHGGGCSEEEEESCHHHHHHHHHHHHHHCCCCCC--
T ss_pred             HHHHHHhhccCCCEEEECCCHHHHHHHHHHHHHHccCCCCCC
Confidence            356677799999999999999999999999999999999998

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.84  E-value=8.4e-09  Score=88.60  Aligned_cols=144  Identities=14%  Similarity=0.188  Sum_probs=79.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecC-cccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHED-AMYG  171 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g-~~YG  171 (330)
                      .+.|+|+||+||||||+++.|.+.+.                       +.|++.+.+........+.+.....| ..|.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~-----------------------~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~   61 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK-----------------------RILYDSDKEIEKRTGADIAWIFEMEGEAGFR   61 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC-----------------------CCEEEHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC-----------------------CCEEEChHHHHHHcCCChhhHHHHhCHHHHH
Confidence            46899999999999999999987652                       33555555443332222211111111 2233


Q ss_pred             ccH-HHHHHHHHhCCeEEEEe------CHHHHHHHHhcCCCCEEEEEccCcc---ccc--cC-------ch----HHHHH
Q psy933          172 TKL-ETIRRIHQEGKIAILDV------EPQALKILRTGEFSPFVVFIAAPQL---QNL--SD-------YD----GSLEK  228 (330)
Q Consensus       172 ts~-~~i~~v~~~gk~~vldv------~~~~v~~L~~~~~~p~vIfI~pps~---~~l--~~-------~~----e~~~r  228 (330)
                      ... ..+..+.. ...+++..      +......|+..   ..+||+.+|.-   +++  +.       .+    +.+++
T Consensus        62 ~~~~~~~~~~~~-~~~~vi~~gg~~~~~~~~~~~l~~~---~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~  137 (185)
T 3trf_A           62 RREREMIEALCK-LDNIILATGGGVVLDEKNRQQISET---GVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQ  137 (185)
T ss_dssp             HHHHHHHHHHHH-SSSCEEECCTTGGGSHHHHHHHHHH---EEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-cCCcEEecCCceecCHHHHHHHHhC---CcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHH
Confidence            222 22333333 33344443      45555556553   37888887622   122  10       11    12233


Q ss_pred             HHHHHHHHHhhccccceEEEecC--CHHHHHHHHHHHHHH
Q psy933          229 LAKESDILKSAYEHFFDLTVVNN--DIEETIGILEKAIEE  266 (330)
Q Consensus       229 l~~~~~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~  266 (330)
                      +..+..   ..|..++|++|.++  ++++++++|.+.+..
T Consensus       138 ~~~~r~---~~y~~~ad~~Idt~~~~~~e~~~~I~~~l~~  174 (185)
T 3trf_A          138 LNEIRK---PLYQAMADLVYPTDDLNPRQLATQILVDIKQ  174 (185)
T ss_dssp             HHHHHH---HHHHHHCSEEEECTTCCHHHHHHHHHHHSCC
T ss_pred             HHHHHH---HHHhhcCCEEEECCCCCHHHHHHHHHHHHHH
Confidence            333322   23556689999988  589999999887653

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.83  E-value=5.8e-09  Score=94.20  Aligned_cols=162  Identities=14%  Similarity=0.194  Sum_probs=92.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcccee-eEEe---ecC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYL-EYGT---HED  167 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fl-e~~~---~~g  167 (330)
                      ++..|+|.||+||||||++++|.+.++.  +..+ .+|+.|..++.         .+.+.+.+..+..+ ...+   +..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~-~~~~~p~~~~~---------g~~i~~~~~~~~~~~~~~~~ll~~a   92 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDV-IMTREPGGVPT---------GEEIRKIVLEGNDMDIRTEAMLFAA   92 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCE-EEECTTTTCHH---------HHHHHHHTTC---CCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc-eeecCCCCCch---------HHHHHHHHhCCCCCCHHHHHHHHHH
Confidence            4578999999999999999999998764  3333 46777765432         13455555554431 1110   111


Q ss_pred             ccccccHHHHHHHHHhCCeEEEE---------------eCHHHHHHHHh---cCCCC-EEEEEccCcccccc----C---
Q psy933          168 AMYGTKLETIRRIHQEGKIAILD---------------VEPQALKILRT---GEFSP-FVVFIAAPQLQNLS----D---  221 (330)
Q Consensus       168 ~~YGts~~~i~~v~~~gk~~vld---------------v~~~~v~~L~~---~~~~p-~vIfI~pps~~~l~----~---  221 (330)
                      +.+....+.|...+++|+++|+|               ++...+..|..   ..+.| .+||+..|. +.+.    .   
T Consensus        93 ~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~-e~~~~R~~~R~~  171 (229)
T 4eaq_A           93 SRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSA-EVGRERIIKNSR  171 (229)
T ss_dssp             HHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCH-HHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCH-HHHHHHHHhcCC
Confidence            22222223356677899999999               45554444443   33444 477887663 2221    1   


Q ss_pred             ----ch-H--H-HHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933          222 ----YD-G--S-LEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       222 ----~~-e--~-~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                          .+ +  + .+++.+....+...|.. ...+|.++ ++++..++|.++|...
T Consensus       172 ~~dr~e~~~~~~~~rv~~~y~~l~~~~~~-~~~vIDa~~s~eev~~~I~~~l~~~  225 (229)
T 4eaq_A          172 DQNRLDQEDLKFHEKVIEGYQEIIHNESQ-RFKSVNADQPLENVVEDTYQTIIKY  225 (229)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHHTTTCTT-TEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             CccchhhhhHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCCHHHHHHHHHHHHHHH
Confidence                01 1  1 23444444444333332 23455555 9999999999998765

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=98.81  E-value=1.1e-08  Score=92.60  Aligned_cols=165  Identities=16%  Similarity=0.172  Sum_probs=96.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCc---cccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE---ee
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKY---AYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG---TH  165 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f---~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~---~~  165 (330)
                      ++..|+|.||+||||||++++|.+.++..|   +..+ .+||.|+.++. |        +.+.+.+..+.+-.+.   -|
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~rep~~t~~-g--------~~ir~~l~~~~~~~~~~~llf   93 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV-VVTREPGGTRL-G--------ETLREILLNQPMDLETEALLM   93 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE-EEEESSSSSHH-H--------HHHHHHHHHSCCCHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee-eeecCCCCChH-H--------HHHHHHHHcCCCCHHHHHHHH
Confidence            357899999999999999999998876432   3344 57898865432 2        3456666655422121   13


Q ss_pred             cCccccccHHHHHHHHHhCCeEEEEe---------------CHHHHHHHHh---cCCCC-EEEEEccCcc---ccccCc-
Q psy933          166 EDAMYGTKLETIRRIHQEGKIAILDV---------------EPQALKILRT---GEFSP-FVVFIAAPQL---QNLSDY-  222 (330)
Q Consensus       166 ~g~~YGts~~~i~~v~~~gk~~vldv---------------~~~~v~~L~~---~~~~p-~vIfI~pps~---~~l~~~-  222 (330)
                      ..+.|..-...|+..+++|+++|+|=               +.+-+..|..   ..+.| .+||+..|.-   +++... 
T Consensus        94 ~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~  173 (227)
T 3v9p_A           94 FAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR  173 (227)
T ss_dssp             HHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence            44556655566788889999999983               2333444432   23444 4788886532   222211 


Q ss_pred             -----h---HH-HHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933          223 -----D---GS-LEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       223 -----~---e~-~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                           +   .+ ++++.+....+...|+. --.+|.++ ++++..++|.++|+.|
T Consensus       174 ~~dr~E~~~~ef~~rv~~~Y~~la~~~~~-~~~vIDa~~s~eeV~~~I~~~l~~l  227 (227)
T 3v9p_A          174 MPDKFESESDAFFARTRAEYLRRAQEAPH-RFVIVDSSEPIAQIRKQLEGVLAAL  227 (227)
T ss_dssp             CC---CCHHHHHHHHHHHHHHHHHHHCTT-TEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred             CccchhhhhHHHHHHHHHHHHHHHHHhcC-CEEEEeCCCCHHHHHHHHHHHHHhC
Confidence                 1   11 24444444444434432 23556555 9999999999988764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.77  E-value=1.2e-08  Score=89.28  Aligned_cols=167  Identities=14%  Similarity=0.080  Sum_probs=82.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCC--eeEEEecccchhhHHhccceeeEEeecCcc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENG--RAYYFISHDEMMSDIAANQYLEYGTHEDAM  169 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G--~dy~fvs~~~f~~~i~~~~fle~~~~~g~~  169 (330)
                      ++..|+|+|++||||||+++.|.+.+...+ ..+ ..+|.|..+..-|  ...+|.+...|........      +..+.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~-~~v-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~r   79 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCAAG-HRA-ELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLL------FSANR   79 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTT-CCE-EEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHH------HHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHcC-CcE-EEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHH------HHHHH
Confidence            357899999999999999999998754222 222 3456553211101  0111111111111100000      00111


Q ss_pred             ccccHHHHHHHHHhCCeEEEEeC---------------HHHHHHHHhcC-CCCEEEEEccCccc---cccC------chH
Q psy933          170 YGTKLETIRRIHQEGKIAILDVE---------------PQALKILRTGE-FSPFVVFIAAPQLQ---NLSD------YDG  224 (330)
Q Consensus       170 YGts~~~i~~v~~~gk~~vldv~---------------~~~v~~L~~~~-~~p~vIfI~pps~~---~l~~------~~e  224 (330)
                      |.. ...+...+.+|..+|+|-.               .+.+..+.... ....+||+.+|.-.   ++..      ..+
T Consensus        80 ~~~-~~~i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~~~~~~~  158 (215)
T 1nn5_A           80 WEQ-VPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGA  158 (215)
T ss_dssp             HTT-HHHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCSHH
T ss_pred             HHH-HHHHHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccchHH
Confidence            222 2456777788999999832               33333332221 23468888876321   1211      111


Q ss_pred             HHHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHhc
Q psy933          225 SLEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEELH  268 (330)
Q Consensus       225 ~~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~~  268 (330)
                      -.+++......+...+. .-.++|.|+ ++++++++|.+++..+.
T Consensus       159 ~~~~~~~~~~~~~~~~~-~~~~~Id~~~~~e~~~~~i~~~l~~~l  202 (215)
T 1nn5_A          159 FQERALRCFHQLMKDTT-LNWKMVDASKSIEAVHEDIRVLSEDAI  202 (215)
T ss_dssp             HHHHHHHHHHHHTTCTT-SCEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCC-CCEEEEECCCCHHHHHHHHHHHHHHHH
Confidence            12333333232222221 123566655 89999999999987653

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.74  E-value=4.4e-08  Score=86.38  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=26.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS  131 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~  131 (330)
                      .|+|+||+||||||++++|.+.+. ........++|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~-~~~i~~d~~~r~   37 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG-IPHISTGDMFRA   37 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS-CCEEEHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-CcEEeHHHHHHH
Confidence            488999999999999999988764 222333345554

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.73  E-value=3.1e-08  Score=86.74  Aligned_cols=151  Identities=13%  Similarity=0.096  Sum_probs=78.5

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchh-----hHHhccceeeEEe
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-----SDIAANQYLEYGT  164 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~-----~~i~~~~fle~~~  164 (330)
                      ...+..|+|+||+|||||||++.|......                       .+++.+.+.     .....|.....  
T Consensus        26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~-----------------------~~i~~d~~~~~~~~~~~~~g~~~~~--   80 (200)
T 4eun_A           26 GEPTRHVVVMGVSGSGKTTIAHGVADETGL-----------------------EFAEADAFHSPENIATMQRGIPLTD--   80 (200)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHHCC-----------------------EEEEGGGGSCHHHHHHHHTTCCCCH--
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHhhCC-----------------------eEEcccccccHHHHHHHhcCCCCCC--
Confidence            335679999999999999999999876521                       111111111     11111211110  


Q ss_pred             ecCc-cccccHHHHHHHHHhCCeEEEEeC---HHHHHHHHhcCCCCEEEEEccCcccccc----Cc---hHHHHHHHHHH
Q psy933          165 HEDA-MYGTKLETIRRIHQEGKIAILDVE---PQALKILRTGEFSPFVVFIAAPQLQNLS----DY---DGSLEKLAKES  233 (330)
Q Consensus       165 ~~g~-~YGts~~~i~~v~~~gk~~vldv~---~~~v~~L~~~~~~p~vIfI~pps~~~l~----~~---~e~~~rl~~~~  233 (330)
                      .... .+..-...+...+..|..+|++..   ......++.......+||+.+| .+.+.    ..   ......+....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~-~e~l~~Rl~~R~~~~~~~~~l~~~~  159 (200)
T 4eun_A           81 EDRWPWLRSLAEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGP-AEVIKGRMSKREGHFMPASLLQSQL  159 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECC-HHHHHHHHTTCSCCSSCGGGHHHHH
T ss_pred             cccccHHHHHHHHHHHHHhcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCC-HHHHHHHHHhcccCCCCHHHHHHHH
Confidence            0000 011111223334467888888874   3334445444344578899987 33332    10   00011111112


Q ss_pred             HHHHhhccccceEEEecC-CHHHHHHHHHHHHHH
Q psy933          234 DILKSAYEHFFDLTVVNN-DIEETIGILEKAIEE  266 (330)
Q Consensus       234 ~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~  266 (330)
                      +..+.-|....|++|.|+ ++++++++|.+++..
T Consensus       160 ~~~~~~~~~~~~~~Id~~~~~~e~~~~I~~~l~~  193 (200)
T 4eun_A          160 ATLEALEPDESGIVLDLRQPPEQLIERALTWLDI  193 (200)
T ss_dssp             HHCCCCCTTSCEEEEETTSCHHHHHHHHHHHHCC
T ss_pred             HHhCCCCCCCCeEEEECCCCHHHHHHHHHHHHHh
Confidence            222223455579999887 899999999988764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.73  E-value=2.3e-08  Score=86.25  Aligned_cols=162  Identities=12%  Similarity=0.181  Sum_probs=81.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccC-CCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS-PRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~-pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      ++.|+|+||+||||||+++.|.+.+.-.+ .......|. ++.++..|        ..+...+..|.++..    ...+.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~-i~~d~~~~~~~~~~~~~~--------~~i~~~~~~g~~~~~----~~~~~   75 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTH-LSTGDLLRSEVSSGSARG--------KKLSEIMEKGQLVPL----ETVLD   75 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHCCEE-EEHHHHHHHHHHTTCHHH--------HHHHHHHHTTCCCCH----HHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeE-EcHHHHHHHHHHcCChHH--------HHHHHHHHcCCcCCH----HHHHH
Confidence            46899999999999999999988754211 111111111 11111111        223333344443321    11233


Q ss_pred             ccHHHHHHHHHhCCeEEEEeCH---HHHHHHHhcCCCC-EEEEEccCcccccc---C----------chHHH-HHHHHHH
Q psy933          172 TKLETIRRIHQEGKIAILDVEP---QALKILRTGEFSP-FVVFIAAPQLQNLS---D----------YDGSL-EKLAKES  233 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv~~---~~v~~L~~~~~~p-~vIfI~pps~~~l~---~----------~~e~~-~rl~~~~  233 (330)
                      .-...+...++.|+.+|+|..+   ..++.+......| .+||+.+|.-..++   .          ..+.+ +|+....
T Consensus        76 ~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~  155 (196)
T 2c95_A           76 MLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYY  155 (196)
T ss_dssp             HHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHH
Confidence            3345555556678999999643   3333333322333 78899876322111   0          11222 2222211


Q ss_pred             HH---HHhhccc-cceEEEecC-CHHHHHHHHHHHHHHh
Q psy933          234 DI---LKSAYEH-FFDLTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       234 ~~---ie~~~~~-~fD~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                      ..   +...|.. -+-.+|.|+ ++++++++|..+++..
T Consensus       156 ~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~  194 (196)
T 2c95_A          156 KATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL  194 (196)
T ss_dssp             HHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence            11   1111322 112346555 8999999999988754

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.72  E-value=3e-08  Score=86.75  Aligned_cols=25  Identities=20%  Similarity=0.406  Sum_probs=22.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++.|+|+||+|||||||++.|.+.+
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            4689999999999999999999865

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.70  E-value=6.5e-09  Score=97.71  Aligned_cols=49  Identities=20%  Similarity=0.401  Sum_probs=44.8

Q ss_pred             cccchhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHhcCCCceeecc
Q psy933          279 LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS  327 (330)
Q Consensus       279 ~~~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~~~~~qWvp~~  327 (330)
                      ..+.|.++|..|+|+||.+|+||||++|+.+|+++|...+++|||||++
T Consensus       244 rl~~a~~~e~~~~~~fd~vivNd~le~a~~~l~~ii~~~~~~~~Wvp~~  292 (295)
T 1kjw_A          244 AFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPAR  292 (295)
T ss_dssp             HHHHHHHHHHHHGGGCSEEECCSSHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred             HHHHHHHHHHhccccCeEEEECcCHHHHHHHHHHHHHhccCCCEEeeCC
Confidence            3455667888999999999999999999999999999999999999986

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=98.70  E-value=5.6e-08  Score=88.49  Aligned_cols=165  Identities=14%  Similarity=0.227  Sum_probs=97.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc----ce---eeEEe
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN----QY---LEYGT  164 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~----~f---le~~~  164 (330)
                      ++..|+|.||+||||||++++|.+.+.. .+..+.++||.|+..+. |        +.+.+.+..+    .+   .|.--
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~rep~~t~~-g--------~~ir~~l~~~~~~~~~~~~~e~lL   95 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTREPGGTLL-A--------EKLRALVKEEHPGEELQDITELLL   95 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHH-H--------HHHHHHHHSCCTTSCCCHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeecCCCCCHH-H--------HHHHHHHhhCCCcccCCHHHHHHH
Confidence            3579999999999999999999887653 33443578998864322 1        3444444311    11   11111


Q ss_pred             ecCccccccHHHHHHHHHhCCeEEEEe---------------CHHHHHHHHh---cCCCC-EEEEEccCcc---ccccC-
Q psy933          165 HEDAMYGTKLETIRRIHQEGKIAILDV---------------EPQALKILRT---GEFSP-FVVFIAAPQL---QNLSD-  221 (330)
Q Consensus       165 ~~g~~YGts~~~i~~v~~~gk~~vldv---------------~~~~v~~L~~---~~~~p-~vIfI~pps~---~~l~~-  221 (330)
                      |..+.+..-...|+..+++|+++|.|=               +.+-+..|..   ..+.| .+||+..|.-   +++.. 
T Consensus        96 f~A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R  175 (236)
T 3lv8_A           96 VYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGR  175 (236)
T ss_dssp             HHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence            223344444455777888999999982               2333344433   23444 5788887632   12211 


Q ss_pred             -----ch----HHHHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHhc
Q psy933          222 -----YD----GSLEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEELH  268 (330)
Q Consensus       222 -----~~----e~~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~~  268 (330)
                           .+    +-++++.+....+...++.  ..+|.++ ++++..++|.++|+..-
T Consensus       176 ~~~dr~E~~~~~~~~rv~~~y~~la~~~~~--~~vIDa~~sieeV~~~I~~~l~~~l  230 (236)
T 3lv8_A          176 GELDRIEKMDISFFERARERYLELANSDDS--VVMIDAAQSIEQVTADIRRALQDWL  230 (236)
T ss_dssp             -CCCTTTTSCHHHHHHHHHHHHHHHHHCTT--EEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             CCcchhhhhHHHHHHHHHHHHHHHHHHCCC--EEEEeCCCCHHHHHHHHHHHHHHHH
Confidence                 01    2234555555555444443  5566665 99999999999998653

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.68  E-value=4.8e-08  Score=86.01  Aligned_cols=24  Identities=29%  Similarity=0.648  Sum_probs=21.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|+||+||||||+++.|.+.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            488999999999999999988764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.68  E-value=1.3e-07  Score=81.02  Aligned_cols=152  Identities=13%  Similarity=0.193  Sum_probs=77.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchh-hHHh-ccceeeEEeecC---
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-SDIA-ANQYLEYGTHED---  167 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~-~~i~-~~~fle~~~~~g---  167 (330)
                      +..|+|+||+||||||+++.|.+.+..                  .|.+|.+++..++- .... .|.+..+.++..   
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~------------------~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~   64 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRK------------------EGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP   64 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHT------------------TTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh------------------cCcceEEEehHHHHHHHHhccCCCCCHHHHhcCCH
Confidence            368999999999999999999986542                  24456666654432 2221 222222211111   


Q ss_pred             ---ccccccH-HHHHHHHHhCCeEEEEeCHH-----HH------HHHHhcCCCCEEEEEccCcccc----ccC--c----
Q psy933          168 ---AMYGTKL-ETIRRIHQEGKIAILDVEPQ-----AL------KILRTGEFSPFVVFIAAPQLQN----LSD--Y----  222 (330)
Q Consensus       168 ---~~YGts~-~~i~~v~~~gk~~vldv~~~-----~v------~~L~~~~~~p~vIfI~pps~~~----l~~--~----  222 (330)
                         ..+.... +.+... ..+..+|+|....     +.      ..++.... .++|||.+|.-..    +..  .    
T Consensus        65 ~~~~~~~~~~~~~i~~~-~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~rRl~~~~R~r~~  142 (192)
T 1kht_A           65 ETQKRIQKMAGRKIAEM-AKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNP-DLIIVVETTGDEILMRRMSDETRVRDL  142 (192)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTTSCEEEECCSEEEETTEEEESSCHHHHHHHCC-SEEEEEECCHHHHHHHHHTSSSCSSSC
T ss_pred             HHHHHHHHHHHHHHHhh-ccCCeEEEccceeccccccccccCcHHHHhccCC-CEEEEEeCCHHHHHHHHhhhcccCCCc
Confidence               0111111 113222 3466788876321     11      23333222 4689999875322    211  1    


Q ss_pred             --hHHHH---HHHHHHHHHHhhccccceEEEecCC--HHHHHHHHHHHH
Q psy933          223 --DGSLE---KLAKESDILKSAYEHFFDLTVVNND--IEETIGILEKAI  264 (330)
Q Consensus       223 --~e~~~---rl~~~~~~ie~~~~~~fD~vI~N~d--le~a~~~L~~~i  264 (330)
                        .+.+.   ++.+........|....+++|.|.+  +++++++|.++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~~i~~~i  191 (192)
T 1kht_A          143 DTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL  191 (192)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence              12221   1111111111224344566677777  999999998776

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.66  E-value=1.6e-07  Score=79.98  Aligned_cols=148  Identities=14%  Similarity=0.244  Sum_probs=76.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhH--H---hccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD--I---AANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~--i---~~~~fle~~~~~  166 (330)
                      .+..|+|+||+|||||||++.|......                       .+++.+.+...  +   ..|.-+.  ...
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~-----------------------~~i~~d~~~~~~~~~~~~~g~~~~--~~~   61 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQLHA-----------------------AFLDGDFLHPRRNIEKMASGEPLN--DDD   61 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTC-----------------------EEEEGGGGCCHHHHHHHHTTCCCC--HHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhhCc-----------------------EEEeCccccchHHHHHhhcCcCCC--ccc
Confidence            3468999999999999999999875421                       12222221100  0   0111000  000


Q ss_pred             Ccccccc-HHHHHHHHHhCCeEEEEeC---HHHHHHHHhcCCCCEEEEEccCcccccc----CchH---HHHHHHHHHHH
Q psy933          167 DAMYGTK-LETIRRIHQEGKIAILDVE---PQALKILRTGEFSPFVVFIAAPQLQNLS----DYDG---SLEKLAKESDI  235 (330)
Q Consensus       167 g~~YGts-~~~i~~v~~~gk~~vldv~---~~~v~~L~~~~~~p~vIfI~pps~~~l~----~~~e---~~~rl~~~~~~  235 (330)
                      +..+-+. ...+...+..|..+|++..   ......++.......+||+.+|. +.+.    ....   ....+......
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~~~-e~~~~R~~~R~~~~~~~~~~~~~~~~  140 (175)
T 1knq_A           62 RKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDF-DVIESRLKARKGHFFKTQMLVTQFET  140 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECCH-HHHHHHHHTSTTCCCCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCCcEEEEeCchHHHHHHHHHhcCCCEEEEEEECCH-HHHHHHHHhccCCCCchHHHHHHHHh
Confidence            0000011 1223334456888998864   44555666544444799999763 3221    1100   00111111111


Q ss_pred             HHhh-ccccceEEEecC-CHHHHHHHHHHHHH
Q psy933          236 LKSA-YEHFFDLTVVNN-DIEETIGILEKAIE  265 (330)
Q Consensus       236 ie~~-~~~~fD~vI~N~-dle~a~~~L~~~i~  265 (330)
                      ++.. |....|++|.|+ +++++.++|.+.+.
T Consensus       141 ~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~  172 (175)
T 1knq_A          141 LQEPGADETDVLVVDIDQPLEGVVASTIEVIK  172 (175)
T ss_dssp             CCCCCTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             hhCcccCCCCeEEEeCCCCHHHHHHHHHHHHh
Confidence            1222 445579999888 89999999988775

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=98.60  E-value=4.1e-08  Score=84.11  Aligned_cols=27  Identities=22%  Similarity=0.470  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +.+.|+|+|++||||||+++.|.+.+.
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999999988653

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.60  E-value=1.1e-07  Score=83.04  Aligned_cols=162  Identities=11%  Similarity=0.119  Sum_probs=83.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceee----EEeecC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLE----YGTHED  167 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle----~~~~~g  167 (330)
                      +++.|+|+|++||||||+++.|.+.+...+ ..+ .++|.|..++..|.        .+...+..+.-+.    ..-+..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~-~~~-~~~~~~~~~~~~g~--------~i~~~~~~~~~~~~~~~~~~~~~   78 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN-VEV-KHLYFPNRETGIGQ--------IISKYLKMENSMSNETIHLLFSA   78 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTT-CCE-EEEESSCTTSHHHH--------HHHHHHTTSSCCCHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC-CcE-EEEecCCCCCcHHH--------HHHHHHhcCCCCCHHHHHHHHHH
Confidence            357899999999999999999998754222 222 45776654322111        1111111110000    000000


Q ss_pred             ccccccHHHHHHHHHhCCeEEEEeCHHH---H---------HHHHh--cC--CCCEEEEEccCcccccc---Cc-----h
Q psy933          168 AMYGTKLETIRRIHQEGKIAILDVEPQA---L---------KILRT--GE--FSPFVVFIAAPQLQNLS---DY-----D  223 (330)
Q Consensus       168 ~~YGts~~~i~~v~~~gk~~vldv~~~~---v---------~~L~~--~~--~~p~vIfI~pps~~~l~---~~-----~  223 (330)
                      +.+.. ...+...+..|..+|+|-.+.+   .         ..+..  ..  ..-.+||+.+|.-..++   ..     +
T Consensus        79 ~~~~~-~~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r~~~  157 (212)
T 2wwf_A           79 NRWEH-MNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEK  157 (212)
T ss_dssp             HHHTT-HHHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSSTTCS
T ss_pred             HHHHH-HHHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcccccH
Confidence            11111 1346667788999999876532   1         11211  11  23468888876432222   10     1


Q ss_pred             HHH-HHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933          224 GSL-EKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       224 e~~-~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                      +++ +++.......   .....+++|.|+ ++++++++|.+++.++
T Consensus       158 ~~~~~~~~~~~~~~---~~~~~~~~Id~~~~~~~~~~~i~~~l~~~  200 (212)
T 2wwf_A          158 VETQKKIYETYKHF---AHEDYWINIDATRKIEDIHNDIVKEVTKI  200 (212)
T ss_dssp             HHHHHHHHHHGGGG---TTCTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHH---hccCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence            111 2222111111   113347888777 8999999999998765

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.57  E-value=2.9e-08  Score=103.86  Aligned_cols=48  Identities=21%  Similarity=0.418  Sum_probs=44.5

Q ss_pred             ccchhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHhcCCCceeecc
Q psy933          280 AKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS  327 (330)
Q Consensus       280 ~~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~~~~~qWvp~~  327 (330)
                      .+.|.++|..|+|+||.+|+||||++||.+|+++|+.++++|||||++
T Consensus       671 l~~a~~~e~~~~~~fd~vi~Nd~l~~a~~~l~~~i~~~~~~~~Wvp~~  718 (721)
T 2xkx_A          671 FDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPAR  718 (721)
T ss_pred             HHHHHHHHHhccccCcEEEECcCHHHHHHHHHHHHHhccCCcEEeecc
Confidence            445667899999999999999999999999999999999999999986

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.56  E-value=6.6e-08  Score=87.72  Aligned_cols=61  Identities=16%  Similarity=0.185  Sum_probs=39.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccC-CCCcccCCeeEEEecccchhhHHhccceeeE
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS-PRSDEENGRAYYFISHDEMMSDIAANQYLEY  162 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~-pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~  162 (330)
                      +..|+|+||+||||||++++|.+.+. .....+..++|. .+.++..|        ..+.+.+..|.++..
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~~~g-~~~is~~~~~r~~~~~~~~~g--------~~i~~~~~~g~~~~~   90 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKKSHC-YCHLSTGDLLREAAEKKTELG--------LKIKNIINEGKLVDD   90 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHTTSSSHHH--------HHHHHHHHTTCCCCH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC-CeEEecHHHHHHHHhccchHH--------HHHHHHHhcCCCCcH
Confidence            35799999999999999999998764 334445566665 23332222        245555556665543

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.54  E-value=6.9e-08  Score=83.43  Aligned_cols=26  Identities=23%  Similarity=0.507  Sum_probs=23.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ++.|+|+||+||||||+++.|.+.+.
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999998753

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.51  E-value=9.6e-08  Score=81.00  Aligned_cols=100  Identities=20%  Similarity=0.299  Sum_probs=56.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc--ce-eeEEee-cCc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN--QY-LEYGTH-EDA  168 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~--~f-le~~~~-~g~  168 (330)
                      ++.|+|+||+||||||++++|.+... .                     +.+++.+.+...+...  .+ -.+... ...
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~-~---------------------~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~   59 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNP-G---------------------FYNINRDDYRQSIMAHEERDEYKYTKKKEGI   59 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHST-T---------------------EEEECHHHHHHHHTTSCCGGGCCCCHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcC-C---------------------cEEecHHHHHHHhhCCCccchhhhchhhhhH
Confidence            45799999999999999999987311 1                     2334433333332211  00 000000 011


Q ss_pred             cccccHHHHHHHH---HhCCeEEEEeCHH---HHHHHH----hcCCCCEEEEEccC
Q psy933          169 MYGTKLETIRRIH---QEGKIAILDVEPQ---ALKILR----TGEFSPFVVFIAAP  214 (330)
Q Consensus       169 ~YGts~~~i~~v~---~~gk~~vldv~~~---~v~~L~----~~~~~p~vIfI~pp  214 (330)
                      .+......+...+   ..|+.+|+|..+.   -...++    ..+....+||+.+|
T Consensus        60 ~~~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~  115 (181)
T 1ly1_A           60 VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP  115 (181)
T ss_dssp             HHHHHHHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCC
Confidence            3344456677778   7899999986532   222232    23444578999876

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.48  E-value=2.8e-07  Score=80.14  Aligned_cols=26  Identities=15%  Similarity=0.217  Sum_probs=23.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ++.|+|.|++||||||+++.|.+.+.
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            35899999999999999999998765

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=98.48  E-value=5.2e-07  Score=77.46  Aligned_cols=99  Identities=14%  Similarity=0.162  Sum_probs=56.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccc-ee--eEE-eecCc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQ-YL--EYG-THEDA  168 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~-fl--e~~-~~~g~  168 (330)
                      ++.|+|+|++||||||+++.|.+.+.  +                     .+++.+.+...+..+. +-  ++. .....
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l~--~---------------------~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~   61 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGLR--L---------------------PLLSKDAFKEVMFDGLGWSDREWSRRVGAT   61 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHT--C---------------------CEEEHHHHHHHHHHHHCCCSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC--C---------------------eEecHHHHHHHHHHhcCccchHHHHHhhHH
Confidence            46899999999999999999987642  1                     1233333332222110 00  000 00111


Q ss_pred             cccccHHHHHHHHHhCCeEEEEeCHH------HHHHHHhcCCCC-EEEEEccC
Q psy933          169 MYGTKLETIRRIHQEGKIAILDVEPQ------ALKILRTGEFSP-FVVFIAAP  214 (330)
Q Consensus       169 ~YGts~~~i~~v~~~gk~~vldv~~~------~v~~L~~~~~~p-~vIfI~pp  214 (330)
                      .|+.....+..+++.|..+|+|....      .+..|......| .+||+.+|
T Consensus        62 ~~~~~~~~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~  114 (193)
T 2rhm_A           62 AIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVAS  114 (193)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence            23444455667788999999997762      122355544445 57888875

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.47  E-value=9.3e-08  Score=81.86  Aligned_cols=25  Identities=20%  Similarity=0.347  Sum_probs=22.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +.|+|+||+||||||+++.|.+.++
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999998765

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=98.46  E-value=8e-07  Score=79.43  Aligned_cols=163  Identities=14%  Similarity=0.169  Sum_probs=91.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE---e---ec
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG---T---HE  166 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~---~---~~  166 (330)
                      +..|+|.||+||||||++++|.+.+.. -+..+ ++||.|+..+. |        +.+.+.+..+..-+..   +   |.
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v-~~~~~p~~~~~-g--------~~i~~~l~~~~~~~~~~~~~~llf~   74 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEV-QLTREPGGTPL-A--------ERIRELLLAPSDEPMAADTELLLMF   74 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCE-EEEESSCSSHH-H--------HHHHHHHHSCCSSCCCHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCc-ccccCCCCCHH-H--------HHHHHHHhcCCCCCCCHHHHHHHHH
Confidence            568999999999999999999887753 23334 68898864322 1        3344444444211111   0   11


Q ss_pred             CccccccHHHHHHHHHhCCeEEEEeC---------------HHHHHHHHh---cCCCC-EEEEEccCcc---ccccC---
Q psy933          167 DAMYGTKLETIRRIHQEGKIAILDVE---------------PQALKILRT---GEFSP-FVVFIAAPQL---QNLSD---  221 (330)
Q Consensus       167 g~~YGts~~~i~~v~~~gk~~vldv~---------------~~~v~~L~~---~~~~p-~vIfI~pps~---~~l~~---  221 (330)
                      .+.+..-...|+..+++|+++|.|=-               .+-+..|..   ..+.| .+||+..|.-   +++..   
T Consensus        75 a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~  154 (213)
T 4edh_A           75 AARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGR  154 (213)
T ss_dssp             HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            22222223446667788999998842               233333332   23444 4788886622   11211   


Q ss_pred             ---ch----HHHHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933          222 ---YD----GSLEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       222 ---~~----e~~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                         .+    +-++++.+....+...|+. -..+|.++ ++++..+++.++|...
T Consensus       155 ~dr~E~~~~~~~~rv~~~y~~l~~~~~~-~~~vIDa~~s~eeV~~~I~~~l~~~  207 (213)
T 4edh_A          155 LDRFEQEDRRFFEAVRQTYLQRAAQAPE-RYQVLDAGLPLAEVQAGLDRLLPNL  207 (213)
T ss_dssp             CCTTTTSCHHHHHHHHHHHHHHHHHCTT-TEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             cCcccccHHHHHHHHHHHHHHHHHHCCC-cEEEEeCCCCHHHHHHHHHHHHHHH
Confidence               11    1234555554444434432 24556655 9999999999888754

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=98.46  E-value=1.7e-06  Score=75.27  Aligned_cols=161  Identities=15%  Similarity=0.183  Sum_probs=79.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccC--CCCcccCCeeEEEecccchhhHHhccceeeEEeecCcc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS--PRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAM  169 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~--pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~  169 (330)
                      ..+.|+|+|++||||||++++|.+.+.- .........|.  .+.++..|        +.+...+..|.+...    ...
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~-~~i~~d~~~~~~~~~~~~~~~--------~~i~~~~~~g~~~~~----~~~   80 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDYSF-VHLSAGDLLRAEQGRAGSQYG--------ELIKNCIKEGQIVPQ----EIT   80 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSSC-EEEEHHHHHHHHHHSTTCSCH--------HHHHHHHHTTCCCCH----HHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCc-eEEeHHHHHHHHHhccCCHHH--------HHHHHHHHcCCcCCH----HHH
Confidence            4468999999999999999999987641 11111112221  11121111        122333334443211    112


Q ss_pred             ccccHHHHHHHHHhC-CeEEEEeC---HHHHHHHHhcCC-CCEEEEEccCcccccc---C----------chHHHH-HHH
Q psy933          170 YGTKLETIRRIHQEG-KIAILDVE---PQALKILRTGEF-SPFVVFIAAPQLQNLS---D----------YDGSLE-KLA  230 (330)
Q Consensus       170 YGts~~~i~~v~~~g-k~~vldv~---~~~v~~L~~~~~-~p~vIfI~pps~~~l~---~----------~~e~~~-rl~  230 (330)
                      +..-.+.+..+++.| ..+|++-.   .+....+..... ..++|||.+|.-..++   .          ..+.++ |+.
T Consensus        81 ~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~  160 (203)
T 1ukz_A           81 LALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFN  160 (203)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Confidence            233345566667777 46676643   333334443322 3478999987422221   0          111221 211


Q ss_pred             HH---HHHHHhhccccceEE--EecC-CHHHHHHHHHHHHHH
Q psy933          231 KE---SDILKSAYEHFFDLT--VVNN-DIEETIGILEKAIEE  266 (330)
Q Consensus       231 ~~---~~~ie~~~~~~fD~v--I~N~-dle~a~~~L~~~i~~  266 (330)
                      .-   ...+...|. ..|.+  |.|+ ++++++++|.+++..
T Consensus       161 ~~~~~~~~~~~~~~-~~~~vi~id~~~~~e~v~~~i~~~l~~  201 (203)
T 1ukz_A          161 TFKETSMPVIEYFE-TKSKVVRVRCDRSVEDVYKDVQDAIRD  201 (203)
T ss_dssp             HHHHTTHHHHHHHH-TTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHH-hcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence            10   111111122 23433  4555 899999999998865

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.40  E-value=1.1e-06  Score=75.23  Aligned_cols=160  Identities=19%  Similarity=0.157  Sum_probs=80.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEe---ecCcccc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGT---HEDAMYG  171 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~---~~g~~YG  171 (330)
                      .|+|+|++||||||+++.|.+.++. .+..+ +.|+.|...+. |        +.+.+.+..|.+-....   +..+.|.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~-~g~~~-i~~d~~~~~~~-~--------~~i~~~~~~g~~~~~~~~~~~~~~~~~   70 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQ-KGYFV-SLYREPGGTKV-G--------EVLREILLTEELDERTELLLFEASRSK   70 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHH-TTCCE-EEEESSCSSHH-H--------HHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCCeE-EEEeCCCCCch-H--------HHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999986531 11221 23454432210 1        12333333332211000   0001122


Q ss_pred             ccHHHHHHHHHhCCeEEEEeC---------------HHHHHHHH---hcC-CCCEEEEEccCccccc---cC-----chH
Q psy933          172 TKLETIRRIHQEGKIAILDVE---------------PQALKILR---TGE-FSPFVVFIAAPQLQNL---SD-----YDG  224 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv~---------------~~~v~~L~---~~~-~~p~vIfI~pps~~~l---~~-----~~e  224 (330)
                      .-...+...+.+|..+++|-.               ..-+..+.   ..+ ....+||+..|.-..+   ..     ..+
T Consensus        71 ~l~~~i~~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~~~~  150 (195)
T 2pbr_A           71 LIEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFENKE  150 (195)
T ss_dssp             HHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCCCHH
T ss_pred             HHHHHHHHHHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccchHH
Confidence            222334455678888888732               11222222   222 2346889887642211   11     122


Q ss_pred             HHHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933          225 SLEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       225 ~~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                      -.+++..........|  ..+++|.|+ ++++.+++|.+++.+.
T Consensus       151 ~~~~~~~~~~~~~~~~--~~~~~Id~~~~~~~~~~~i~~~l~~~  192 (195)
T 2pbr_A          151 FLEKVRKGFLELAKEE--ENVVVIDASGEEEEVFKEILRALSGV  192 (195)
T ss_dssp             HHHHHHHHHHHHHHHS--TTEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhC--CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence            2334433333222222  133788877 8999999999988743

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.40  E-value=2.8e-07  Score=79.02  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=22.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+.|+|+|++||||||+++.|.+.+
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3569999999999999999998864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=98.40  E-value=1e-06  Score=74.99  Aligned_cols=147  Identities=16%  Similarity=0.197  Sum_probs=72.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc--ceeeEEeecCccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN--QYLEYGTHEDAMY  170 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~--~fle~~~~~g~~Y  170 (330)
                      +..|+|+|++||||||+++.|.+.+...|.    +.   +  .+ .|        ..+...+..|  .|...    ....
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i----~d---~--~~-~g--------~~i~~~~~~g~~~~~~~----~~~~   62 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV----FE---P--EE-MG--------QALRKLTPGFSGDPQEH----PMWI   62 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHSTTCEE----CC---T--HH-HH--------HHHHHTSTTCCSCGGGS----TTHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCCEE----Ec---h--hh-hH--------HHHHHhCccccchhhhh----HHHH
Confidence            468999999999999999999887642221    00   0  00 00        0011111000  01000    0000


Q ss_pred             cccHHHHHHHHHh-CCeEEEEeCH-------HHHHHHHhcCCCCEEEEEccCcccccc----Cc------hHHHHHHHHH
Q psy933          171 GTKLETIRRIHQE-GKIAILDVEP-------QALKILRTGEFSPFVVFIAAPQLQNLS----DY------DGSLEKLAKE  232 (330)
Q Consensus       171 Gts~~~i~~v~~~-gk~~vldv~~-------~~v~~L~~~~~~p~vIfI~pps~~~l~----~~------~e~~~rl~~~  232 (330)
                      ....+.+..+++. |..+|+|...       .....++..+.....||+..|. +.+.    ..      .+.++++.++
T Consensus        63 ~~~~~~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~-e~~~~R~~~R~~r~~~~~~~~~~~~~  141 (183)
T 2vli_A           63 PLMLDALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPL-NVVLERLRRDGQPQVNVGTVEDRLNE  141 (183)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCH-HHHHHHHHTC----CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCH-HHHHHHHHhccccchhHHHHHHHHHh
Confidence            0113445566666 7888888542       3344566555556678888763 2221    11      1222222222


Q ss_pred             HHHHHhhccccceEEEecC--CHHHHHHHHHHHHHHhc
Q psy933          233 SDILKSAYEHFFDLTVVNN--DIEETIGILEKAIEELH  268 (330)
Q Consensus       233 ~~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~~~  268 (330)
                      .+.    + .+.+ +|.++  ++++++++|.+.+....
T Consensus       142 ~~~----~-~~~~-~Id~~~~~~~~~~~~I~~~l~~~~  173 (183)
T 2vli_A          142 LRG----E-QFQT-HIDTAGLGTQQVAEQIAAQVGLTL  173 (183)
T ss_dssp             HTS----G-GGCS-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred             hcc----c-ccce-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence            211    1 2234 77765  79999999998886543

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.40  E-value=1.5e-06  Score=74.98  Aligned_cols=25  Identities=16%  Similarity=0.449  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .++.|+|+|++||||||+++.|.+.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999999887

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=98.38  E-value=1.2e-06  Score=76.20  Aligned_cols=27  Identities=26%  Similarity=0.427  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ++..|+|+||+||||||+++.|.+.+.
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            446899999999999999999998753

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.36  E-value=6.7e-07  Score=75.49  Aligned_cols=24  Identities=21%  Similarity=0.511  Sum_probs=21.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +.|+|+|++||||||+++.|.+.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999998864

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.33  E-value=8.7e-07  Score=74.53  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+|++||||||+++.|.+.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.31  E-value=2.4e-06  Score=72.89  Aligned_cols=25  Identities=28%  Similarity=0.492  Sum_probs=22.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++.|+|+|++||||||+++.|.+.+
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999998765

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.31  E-value=4.5e-06  Score=73.63  Aligned_cols=26  Identities=12%  Similarity=0.276  Sum_probs=23.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +..|+|.||+||||||++++|++...
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            35899999999999999999998764

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.30  E-value=2e-06  Score=72.70  Aligned_cols=26  Identities=23%  Similarity=0.583  Sum_probs=23.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ++.|+|+||+|||||||++.|.....
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999988753

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.25  E-value=7.4e-07  Score=75.90  Aligned_cols=24  Identities=25%  Similarity=0.582  Sum_probs=21.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +.|+|+||+|||||||++.|.+.+
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            369999999999999999998765

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=98.25  E-value=6.7e-06  Score=70.21  Aligned_cols=25  Identities=20%  Similarity=0.472  Sum_probs=22.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +..|+|+|++||||||+++.|.+.+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999998865

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.24  E-value=4.2e-06  Score=81.88  Aligned_cols=84  Identities=12%  Similarity=0.195  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY  170 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y  170 (330)
                      ..++.|+|+||+||||||++++|++..                       .|.+++.+.+.                 .|
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~-----------------------~~~~i~~D~~~-----------------~~  295 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA-----------------------GYVHVNRDTLG-----------------SW  295 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG-----------------------TCEECCGGGSC-----------------SH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc-----------------------CcEEEccchHH-----------------HH
Confidence            356799999999999999999998754                       25667666551                 35


Q ss_pred             cccHHHHHHHHHhCCeEEEEeC---H---HH-HHHHHhcCCCCEEEEEccC
Q psy933          171 GTKLETIRRIHQEGKIAILDVE---P---QA-LKILRTGEFSPFVVFIAAP  214 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~---~---~~-v~~L~~~~~~p~vIfI~pp  214 (330)
                      +.....+...+..|+.+|+|..   .   .. ...++..+....+||+.+|
T Consensus       296 ~~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~  346 (416)
T 3zvl_A          296 QRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT  346 (416)
T ss_dssp             HHHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             HHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC
Confidence            6667778888899999999955   2   22 2333445666678888765

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.18  E-value=1.9e-06  Score=75.91  Aligned_cols=156  Identities=13%  Similarity=0.140  Sum_probs=77.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      ++..|+|+|++||||||+++.|.+.++.                 ..|..+.+++.+.+...+..+ ...........|.
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~-----------------~~g~~~~~~~~d~~r~~l~~~-~~~~~~~r~~~~~   85 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQLVR-----------------DRRVHAYRLDGDNIRFGLNKD-LGFSEADRNENIR   85 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHH-----------------HHCCCEEEECHHHHTTTTTTT-CCSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhcc-----------------ccCCcEEEECChHHhhhhccc-cCCCHHHHHHHHH
Confidence            4578999999999999999999876530                 012234444443333222111 0000000011111


Q ss_pred             ccHHHHHHHHHhCCeEEEEeC---HHH---HHHHHh---cC---CC-CEEEEEccCccccccCc-h-HHHHHHHHHH---
Q psy933          172 TKLETIRRIHQEGKIAILDVE---PQA---LKILRT---GE---FS-PFVVFIAAPQLQNLSDY-D-GSLEKLAKES---  233 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv~---~~~---v~~L~~---~~---~~-p~vIfI~pps~~~l~~~-~-e~~~rl~~~~---  233 (330)
                      .-...+...++.|..+|+|..   ...   ++.+..   .+   .. ..+||+..|. +.+.+. . .-+++..+..   
T Consensus        86 ~~~~~~~~~l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~-e~~~~R~~r~~~~~~r~~~~~~  164 (211)
T 1m7g_A           86 RIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPV-EVAEQRDPKGLYKKAREGVIKE  164 (211)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCH-HHHHTSCTTCHHHHHHHTSSSS
T ss_pred             HHHHHHHHHHHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCH-HHHHHhhhHHHHHHHHhcchhh
Confidence            112223456678999888843   122   333332   11   13 4678998763 333211 0 0011110000   


Q ss_pred             -HHHHhhcc--ccceEEEecC--CHHHHHHHHHHHHHH
Q psy933          234 -DILKSAYE--HFFDLTVVNN--DIEETIGILEKAIEE  266 (330)
Q Consensus       234 -~~ie~~~~--~~fD~vI~N~--dle~a~~~L~~~i~~  266 (330)
                       +.+...|.  ...|++|.++  ++++++++|.+.+..
T Consensus       165 ~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~  202 (211)
T 1m7g_A          165 FTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT  202 (211)
T ss_dssp             CBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence             01111232  2357888776  699999999998875

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.18  E-value=2e-08  Score=88.05  Aligned_cols=25  Identities=24%  Similarity=0.509  Sum_probs=22.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +.|+|+||+||||||++++|.+.++
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999999998764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.17  E-value=4.9e-06  Score=71.72  Aligned_cols=24  Identities=21%  Similarity=0.523  Sum_probs=21.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|+|++||||||+++.|.+.+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999998764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.16  E-value=6.2e-06  Score=75.46  Aligned_cols=25  Identities=16%  Similarity=0.485  Sum_probs=22.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++.|+|+||+|+|||||++.|.+..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc
Confidence            5789999999999999999998754

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.14  E-value=6e-06  Score=83.68  Aligned_cols=152  Identities=16%  Similarity=0.153  Sum_probs=85.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccc-eeeEEeecCccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQ-YLEYGTHEDAMY  170 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~-fle~~~~~g~~Y  170 (330)
                      .+..|+|+|++||||||+++.|.+.+.                  ..|.++++++.+.+...+..+. |-. .+... .+
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~------------------~~G~~~~~ld~D~ir~~l~~~~~f~~-~er~~-~l  430 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQ------------------ARGRKVTLLDGDVVRTHLSRGLGFSK-EDRIT-NI  430 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH------------------HTTCCEEEECHHHHHHHTCTTCCSSH-HHHHH-HH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhh------------------hcCCeEEEECchHhhhhhcccccccH-HHHHH-HH
Confidence            346899999999999999999987643                  1356678888777665543221 110 00001 12


Q ss_pred             cccHHHHHHHHHhCCeEEEEeC---HHHHHHHHhcC--CCCEEEEEccCccccccCchHHHHHHHH--HHHHHHh-----
Q psy933          171 GTKLETIRRIHQEGKIAILDVE---PQALKILRTGE--FSPFVVFIAAPQLQNLSDYDGSLEKLAK--ESDILKS-----  238 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~---~~~v~~L~~~~--~~p~vIfI~pps~~~l~~~~e~~~rl~~--~~~~ie~-----  238 (330)
                      ..-...++.+++.|..+|++..   ......++..-  ...++|||.+|- +.+.+...  +.+..  ....++.     
T Consensus       431 ~~i~~~~~~~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~-e~~~~Rl~--r~~~~~~~~~~i~~~~~vr  507 (546)
T 2gks_A          431 LRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPV-EVCEERDV--KGLYKKAKEGLIKGFTGVD  507 (546)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCG-GGHHHHCC--SSHHHHC------CCBTTT
T ss_pred             HHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCH-HHHHHHhh--ccccccccHHHHHHHHhhh
Confidence            2222345567788999999953   22223333321  123789999763 33221000  01111  0111221     


Q ss_pred             -hcc--ccceEEEecC--CHHHHHHHHHHHHHH
Q psy933          239 -AYE--HFFDLTVVNN--DIEETIGILEKAIEE  266 (330)
Q Consensus       239 -~~~--~~fD~vI~N~--dle~a~~~L~~~i~~  266 (330)
                       .|.  ...|++|.|+  +++++.++|.+.+..
T Consensus       508 ~~~e~~~~adivIDts~~s~eev~~~I~~~L~~  540 (546)
T 2gks_A          508 DPYEPPVAPEVRVDTTKLTPEESALKILEFLKK  540 (546)
T ss_dssp             BCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             hccccccCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence             222  3468999885  899999999998865

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.14  E-value=8.4e-06  Score=73.10  Aligned_cols=26  Identities=35%  Similarity=0.621  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..+.|+|+||+||||+|++++|.+.+
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34688999999999999999999876

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=98.14  E-value=2.2e-05  Score=70.55  Aligned_cols=24  Identities=17%  Similarity=0.291  Sum_probs=22.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..|+|.|++||||||+++.|++.+
T Consensus        15 ~iI~i~g~~gsGk~~i~~~la~~l   38 (223)
T 3hdt_A           15 LIITIEREYGSGGRIVGKKLAEEL   38 (223)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHc
Confidence            589999999999999999999875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=98.13  E-value=4.1e-06  Score=73.79  Aligned_cols=163  Identities=15%  Similarity=0.232  Sum_probs=80.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCC-CCcccCCee-------EEEecccchhhHHh----c----cc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSP-RSDEENGRA-------YYFISHDEMMSDIA----A----NQ  158 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~p-r~~E~~G~d-------y~fvs~~~f~~~i~----~----~~  158 (330)
                      .|+|+||+||||||+++.|.+.+.- .........|.. ..+...|..       ..+++.+.+...+.    .    +.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~-~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~   80 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGI-PQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCC-CEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-eEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence            4899999999999999999987631 112222333431 111111211       11233333333322    1    12


Q ss_pred             eeeEEeecCccccccHHHHHHHHHh----CCeEEEEeCHHH-HHHHHhcCC-----CCEEEEEccCccccc--------c
Q psy933          159 YLEYGTHEDAMYGTKLETIRRIHQE----GKIAILDVEPQA-LKILRTGEF-----SPFVVFIAAPQLQNL--------S  220 (330)
Q Consensus       159 fle~~~~~g~~YGts~~~i~~v~~~----gk~~vldv~~~~-v~~L~~~~~-----~p~vIfI~pps~~~l--------~  220 (330)
                      ++-.    |  |......+..+...    ..+.+|+++++. ++++.....     ..+-+|+.||+.+..        .
T Consensus        81 ~i~d----g--~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~  154 (214)
T 1e4v_A           81 FLLD----G--FPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELT  154 (214)
T ss_dssp             EEEE----S--CCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCB
T ss_pred             EEEe----C--CCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccc
Confidence            2211    1  22233333433333    246778888865 566665432     236677788876542        1


Q ss_pred             ----CchHHH-HHHHHHHH---HHHhhccc------cceEEEecC-CHHHHHHHHHHHH
Q psy933          221 ----DYDGSL-EKLAKESD---ILKSAYEH------FFDLTVVNN-DIEETIGILEKAI  264 (330)
Q Consensus       221 ----~~~e~~-~rl~~~~~---~ie~~~~~------~fD~vI~N~-dle~a~~~L~~~i  264 (330)
                          +..+.+ +|+....+   .+...|..      ....+|..+ +.++.+++|..+|
T Consensus       155 ~r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l  213 (214)
T 1e4v_A          155 TRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  213 (214)
T ss_dssp             CCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence                122333 34432211   12223432      123445444 8999999988765

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=98.13  E-value=2.5e-05  Score=69.95  Aligned_cols=162  Identities=15%  Similarity=0.150  Sum_probs=86.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccce-----eeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQY-----LEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~f-----le~~~~~  166 (330)
                      +++.|+|.|++||||||++++|.+.+..    . -.+||.|..+..-|        +.+...+..+.+     .+.--|.
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~----~-~~~~~ep~~~t~~g--------~~ir~~l~~~~~~~~~~~~~llf~   70 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP----N-CKLLKFPERSTRIG--------GLINEYLTDDSFQLSDQAIHLLFS   70 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS----S-EEEEESSCTTSHHH--------HHHHHHHHCTTSCCCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc----c-ceEEEecCCCChHH--------HHHHHHHHhcccCCCHHHHHHHHH
Confidence            3579999999999999999999998764    1 24567663221111        112222222110     0000011


Q ss_pred             CccccccHHHHHHHHHhCCeEEEEeCHHH--------------HHHHHh---cCCCC-EEEEE-ccCcccccc-------
Q psy933          167 DAMYGTKLETIRRIHQEGKIAILDVEPQA--------------LKILRT---GEFSP-FVVFI-AAPQLQNLS-------  220 (330)
Q Consensus       167 g~~YGts~~~i~~v~~~gk~~vldv~~~~--------------v~~L~~---~~~~p-~vIfI-~pps~~~l~-------  220 (330)
                      .+.+- ..+.|...+++|+++|.|=-..+              +..+..   ..+.| .+||+ ..|.-.-++       
T Consensus        71 a~R~~-~~~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~d  149 (216)
T 3tmk_A           71 ANRWE-IVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDE  149 (216)
T ss_dssp             HHHHT-THHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCC
T ss_pred             HHHHH-HHHHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcc
Confidence            12222 24567778899999998865433              112221   12344 67888 754221111       


Q ss_pred             --CchHHHHHHHHHHHHHHhh---ccccceEEEe-c-CCHHHHHHHHHHHHHHh
Q psy933          221 --DYDGSLEKLAKESDILKSA---YEHFFDLTVV-N-NDIEETIGILEKAIEEL  267 (330)
Q Consensus       221 --~~~e~~~rl~~~~~~ie~~---~~~~fD~vI~-N-~dle~a~~~L~~~i~~~  267 (330)
                        |..+=.+++.+....+-..   +...--.+|. + .++++..+++.++|...
T Consensus       150 r~E~~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~  203 (216)
T 3tmk_A          150 RYETVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPV  203 (216)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence              1222234454444444322   1122234555 3 49999999999988764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.12  E-value=6.1e-06  Score=70.92  Aligned_cols=23  Identities=26%  Similarity=0.497  Sum_probs=20.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~  115 (330)
                      +..++|+||+|||||||++.|..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc
Confidence            45799999999999999999976

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.11  E-value=1.7e-05  Score=68.01  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++..|+|+|++||||||+++.|....
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l   37 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLL   37 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998765

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.10  E-value=4.6e-06  Score=72.70  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~  115 (330)
                      ..|+|+||+||||||+++.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999976

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=98.09  E-value=4.3e-06  Score=76.29  Aligned_cols=147  Identities=14%  Similarity=0.152  Sum_probs=74.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecC-ccccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHED-AMYGT  172 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g-~~YGt  172 (330)
                      ..|+|+|++||||||+++.|.+.+.. .                 |..+.+++.+.+...+..  |   ..... ..++.
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~L~~-~-----------------g~~~i~~~~D~~~~~l~~--~---~~~~e~~~~~~   61 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKILSK-N-----------------NIDVIVLGSDLIRESFPV--W---KEKYEEFIKKS   61 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH-T-----------------TCCEEEECTHHHHTTSSS--C---CGGGHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHHh-C-----------------CCEEEEECchHHHHHHhh--h---hHHHHHHHHHH
Confidence            57999999999999999999876321 0                 111222344444322211  1   11101 12233


Q ss_pred             cHHHHHHHHHhCCeEEEEeC---HHHHHHHHh----cCCCCEEEEEccCccccccC---------chHHHHHHHHHHHHH
Q psy933          173 KLETIRRIHQEGKIAILDVE---PQALKILRT----GEFSPFVVFIAAPQLQNLSD---------YDGSLEKLAKESDIL  236 (330)
Q Consensus       173 s~~~i~~v~~~gk~~vldv~---~~~v~~L~~----~~~~p~vIfI~pps~~~l~~---------~~e~~~rl~~~~~~i  236 (330)
                      ....+...++. ..+|+|-.   ......+..    .+....+||+.+| .+.+.+         ..+.++++.+..+..
T Consensus        62 ~~~~i~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~~~~l~~~~~~~e~~  139 (260)
T 3a4m_A           62 TYRLIDSALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKAS-LDVLIRRNIERGEKIPNEVIKKMYEKFDEP  139 (260)
T ss_dssp             HHHHHHHHHTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECC-HHHHHHHHHHTTCSSCHHHHHHHHHHCCCT
T ss_pred             HHHHHHHHhhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHhCCCCCCHHHHHHHHHHhcCc
Confidence            34556666666 77787743   222333332    2333568888876 333210         122233332221111


Q ss_pred             Hhhcc-ccceEEEecC---CHHHHHHHHHHHHH
Q psy933          237 KSAYE-HFFDLTVVNN---DIEETIGILEKAIE  265 (330)
Q Consensus       237 e~~~~-~~fD~vI~N~---dle~a~~~L~~~i~  265 (330)
                      ...|. ...+++|.++   ++++.++.|.+.+.
T Consensus       140 ~~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~  172 (260)
T 3a4m_A          140 GKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK  172 (260)
T ss_dssp             TSSCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred             cccCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence            11121 2357888765   57777777776654

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.09  E-value=2.5e-06  Score=75.81  Aligned_cols=26  Identities=23%  Similarity=0.494  Sum_probs=23.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +..|+|+||+||||||++++|.+.+.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l~   32 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHFE   32 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            36899999999999999999998764

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=98.08  E-value=3.9e-06  Score=75.64  Aligned_cols=169  Identities=11%  Similarity=0.021  Sum_probs=85.6

Q ss_pred             ccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc-ceeeEEe--
Q psy933           88 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN-QYLEYGT--  164 (330)
Q Consensus        88 ~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~-~fle~~~--  164 (330)
                      +...++..|+|.|++||||||+++.|.+.+...-+..+-.|||.|..+.. |        +.+.+.+... .+-.+.+  
T Consensus        16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~-g--------~~ir~~l~~~~~~~~~~e~l   86 (223)
T 3ld9_A           16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLL-N--------ESVRNLLFKAQGLDSLSELL   86 (223)
T ss_dssp             ---CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHH-H--------HHHHHHHHTCSSCCHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChH-H--------HHHHHHHhCCCCCCHHHHHH
Confidence            34456679999999999999999999987642123355566898864322 1        1222222211 1000000  


Q ss_pred             -ecCccccccHHHHHHHHHhCCeEEEEeCHH---------------HHHHHHhcC--CC-CEEEEEccCccccccC----
Q psy933          165 -HEDAMYGTKLETIRRIHQEGKIAILDVEPQ---------------ALKILRTGE--FS-PFVVFIAAPQLQNLSD----  221 (330)
Q Consensus       165 -~~g~~YGts~~~i~~v~~~gk~~vldv~~~---------------~v~~L~~~~--~~-p~vIfI~pps~~~l~~----  221 (330)
                       |..+.+..-...|+..+++|+++|.|=-..               -+..|....  +. -.+||+..|.-..++.    
T Consensus        87 lf~a~R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri~rd  166 (223)
T 3ld9_A           87 FFIAMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRSCKN  166 (223)
T ss_dssp             HHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC-----------
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHhccC
Confidence             111112222233555677888888875432               233332211  23 3478887653222211    


Q ss_pred             ---c--hHHHHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933          222 ---Y--DGSLEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       222 ---~--~e~~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                         .  .+-++++.+....+...|. .-..+|.++ ++++. ++|.++|.+.
T Consensus       167 r~E~~~~e~~~rv~~~y~~la~~~~-~~~~vIDa~~sieeV-~~I~~~l~~~  216 (223)
T 3ld9_A          167 GYEFADMEFYYRVRDGFYDIAKKNP-HRCHVITDKSETYDI-DDINFVHLEV  216 (223)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHCT-TTEEEEESSCSSSCC-CHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHCC-CCEEEEcCCCCHHHH-HHHHHHHHHH
Confidence               0  1112444444444433343 235667666 78888 8888777654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=98.06  E-value=7.6e-07  Score=77.20  Aligned_cols=87  Identities=9%  Similarity=0.101  Sum_probs=51.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccC--Cee-EEEecccchhhHHhccceeeEEeecCcc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEEN--GRA-YYFISHDEMMSDIAANQYLEYGTHEDAM  169 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~--G~d-y~fvs~~~f~~~i~~~~fle~~~~~g~~  169 (330)
                      .+.++|+||||+|||||+++|+..++. .+..+..+++.++..+++  |.| |+|++ ..+.+..- ....+++.+.+ .
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~-~g~~v~~i~~~~~~~~id~~g~Ds~~~~~-~G~~~v~i-~~~~~~~~~~~-~   81 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHHDMDVDKPGKDSYELRK-AGAAQTIV-ASQQRWALMTE-T   81 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC------------CHHH-HTCSEEEE-ECSSEEEEEEE-C
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccc-cCCceeEEeeCCCccccCCCCCceEEEEe-CCcceeec-ccchhheeeee-c
Confidence            468999999999999999999987642 345566778888777665  555 55544 11211110 11234443333 5


Q ss_pred             ccccHHHHHHHHHh
Q psy933          170 YGTKLETIRRIHQE  183 (330)
Q Consensus       170 YGts~~~i~~v~~~  183 (330)
                      ||++...++++++.
T Consensus        82 ~~~~~~~L~~ll~r   95 (174)
T 1np6_A           82 PDEEELDLQFLASR   95 (174)
T ss_dssp             SSSCCCCHHHHHHH
T ss_pred             cCCchhhHHHHHHh
Confidence            88888888888865

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.06  E-value=7.4e-06  Score=69.91  Aligned_cols=25  Identities=20%  Similarity=0.507  Sum_probs=22.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +..|+|+||+||||||+++.|.+.+
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999998765

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.06  E-value=1.6e-06  Score=73.18  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=21.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..|+|+|++||||||+++.|.+.+
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999998864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.05  E-value=3.2e-06  Score=78.36  Aligned_cols=27  Identities=19%  Similarity=0.105  Sum_probs=23.1

Q ss_pred             ccceEEEecC-CHHHHHHHHHHHHHHhc
Q psy933          242 HFFDLTVVNN-DIEETIGILEKAIEELH  268 (330)
Q Consensus       242 ~~fD~vI~N~-dle~a~~~L~~~i~~~~  268 (330)
                      ..+|++|.|+ ++++++++|..++..+.
T Consensus       243 ~~AD~vIdn~~s~eel~~~I~~~l~~l~  270 (281)
T 2f6r_A          243 EQSNVVLSTLWESHVTQSQVEKAWNLLQ  270 (281)
T ss_dssp             HTCSEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred             hhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            4579999998 89999999999987653

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=98.03  E-value=3.1e-05  Score=69.05  Aligned_cols=42  Identities=21%  Similarity=0.370  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD  135 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~  135 (330)
                      ++.|+|.|++||||||++++|.+.+.. -+...-++||.|+..
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t   44 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGT   44 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCC
Confidence            578999999999999999999887653 222122788988643

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.03  E-value=4.9e-06  Score=73.07  Aligned_cols=56  Identities=16%  Similarity=0.160  Sum_probs=37.3

Q ss_pred             CCEEEEEccCccccccCchHHHHHHHHHHHHH-HhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933          205 SPFVVFIAAPQLQNLSDYDGSLEKLAKESDIL-KSAYEHFFDLTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       205 ~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~i-e~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                      ...+|||..|.       +..++|+....... ......+.|++|.|+ +++++.+++..+++++
T Consensus       130 ~d~vi~v~a~~-------e~r~~Rli~~q~~~~~~~~~~~AD~vI~n~~~~~~l~~~v~~~~~~l  187 (192)
T 2grj_A          130 CDHVITVVASR-------ETILKRNREADRRLKFQEDIVPQGIVVANNSTLEDLEKKVEEVMKLV  187 (192)
T ss_dssp             CSEEEEEECCH-------HHHHHHCSSHHHHHTTCTTCCCCSEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCH-------HHHHHHHHHhcCCchhhhHHhcCCEEEECCCCHHHHHHHHHHHHHHH
Confidence            45788888773       23345542211111 023457799999998 8999999999998876

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=98.02  E-value=5.5e-06  Score=71.52  Aligned_cols=24  Identities=17%  Similarity=0.224  Sum_probs=21.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      +..|+|+|++||||||+++.|.+.
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            458999999999999999999875

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=98.01  E-value=3.8e-05  Score=67.37  Aligned_cols=24  Identities=17%  Similarity=0.364  Sum_probs=21.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..|+|+|++||||||+++.|.+.+
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            479999999999999999998865

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.98  E-value=4.8e-06  Score=75.61  Aligned_cols=100  Identities=14%  Similarity=0.216  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhc--------cceeeEE
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAA--------NQYLEYG  163 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~--------~~fle~~  163 (330)
                      ++..|+|+||+||||||+++.|.+.++.                     .+++++.+.+...+..        |.-+  .
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~---------------------~~~~~~~D~~r~~~~~~~~i~~~~g~~~--~   87 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEFQG---------------------NIVIIDGDSFRSQHPHYLELQQEYGKDS--V   87 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHTTT---------------------CCEEECGGGGGTTSTTHHHHHTTCSSTT--H
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCC---------------------CcEEEecHHHHHhchhHHHHHHHcCchH--H
Confidence            3468999999999999999999987642                     1344555554332111        1000  0


Q ss_pred             eecCcccccc-HHHHHHHHHhCCeEEEEeCHHH-------HHHHHhcCCCCEEEEEccC
Q psy933          164 THEDAMYGTK-LETIRRIHQEGKIAILDVEPQA-------LKILRTGEFSPFVVFIAAP  214 (330)
Q Consensus       164 ~~~g~~YGts-~~~i~~v~~~gk~~vldv~~~~-------v~~L~~~~~~p~vIfI~pp  214 (330)
                      ++..+..|.- ...++.+++.|..+|+|..+.+       .+.++..+....+||+..|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~  146 (253)
T 2p5t_B           88 EYTKDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATK  146 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred             HHhhHHHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence            0000011211 2334456677888999876532       3445566666667787765

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.97  E-value=4.1e-07  Score=79.75  Aligned_cols=157  Identities=15%  Similarity=0.153  Sum_probs=69.4

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCCC-Cccccc---cccccC----CCCcccCCeeEEE--ecccchhhH----Hhc
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFPD-KYAYPV---PHTTRS----PRSDEENGRAYYF--ISHDEMMSD----IAA  156 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~-~f~~~v---~~TTR~----pr~~E~~G~dy~f--vs~~~f~~~----i~~  156 (330)
                      ..+..|+|+||+|||||||++.|...++. .....+   ....++    ...+...|..|++  ++.+.+.+.    +..
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~~   99 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKA   99 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHhc
Confidence            34568999999999999999999876421 111111   111111    1122222222222  334444333    234


Q ss_pred             cceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc---CchHH-HHHHHHH
Q psy933          157 NQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS---DYDGS-LEKLAKE  232 (330)
Q Consensus       157 ~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~---~~~e~-~~rl~~~  232 (330)
                      +..+.+..|... +++.... ......+.++|++...-.-..+.  .....+|||.+|.-..+.   ..+++ .+++...
T Consensus       100 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~vIveg~~l~~~~~~--~~~d~~i~v~~~~~~~~~R~~~R~~~~~~~~~~~  175 (201)
T 1rz3_A          100 SHQLTLPFYDHE-TDTHSKR-TVYLSDSDMIMIEGVFLQRKEWR--PFFDFVVYLDCPREIRFARENDQVKQNIQKFINR  175 (201)
T ss_dssp             CSEEEEEEEETT-TTEEEEE-EEECTTCSEEEEEETTTTSTTTG--GGCSEEEEECCC--------------CHHHHHHH
T ss_pred             CCccccCceecc-CCCCCCc-eEEeCCCcEEEEechhhccHHHH--hhcCEEEEEeCCHHHHHHHHhcCCHHHHHHHHhh
Confidence            445555444332 2221110 01123577888887642211111  234689999988533332   22222 2333221


Q ss_pred             HHH-----HH-hhccccceEEEecC
Q psy933          233 SDI-----LK-SAYEHFFDLTVVNN  251 (330)
Q Consensus       233 ~~~-----ie-~~~~~~fD~vI~N~  251 (330)
                      ...     ++ ......+|+||.|+
T Consensus       176 ~~~~~~~y~~~~~~~~~AD~vI~N~  200 (201)
T 1rz3_A          176 YWKAEDYYLETEEPIKRADVVFDMT  200 (201)
T ss_dssp             HHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred             eeHHHHHHhCCCCcHhhCcEEecCC
Confidence            111     11 11246789999986

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.95  E-value=5.3e-05  Score=68.77  Aligned_cols=26  Identities=15%  Similarity=0.339  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..|+|+||+|||||||++.|.+.+
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            34689999999999999999998765

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.92  E-value=4.2e-08  Score=91.72  Aligned_cols=125  Identities=10%  Similarity=0.096  Sum_probs=63.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC-----------CCccc-cccccccCCCCcccCC-eeEEEecccchh--------
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP-----------DKYAY-PVPHTTRSPRSDEENG-RAYYFISHDEMM--------  151 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p-----------~~f~~-~v~~TTR~pr~~E~~G-~dy~fvs~~~f~--------  151 (330)
                      +..|+|.||+||||||+++.|.+.+.           |.|.. .+..+++.+++++.+| .+|.+.+.+.|+        
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~l   84 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERVF   84 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHHH
Confidence            46899999999999999999988543           11222 2334444444555555 455554444432        


Q ss_pred             hHHhccceeeEEeec-----CccccccHHHHH---HHHHhCCeEEEEeCHHHH----HHHHhcCCCCEEEEEccCccccc
Q psy933          152 SDIAANQYLEYGTHE-----DAMYGTKLETIR---RIHQEGKIAILDVEPQAL----KILRTGEFSPFVVFIAAPQLQNL  219 (330)
Q Consensus       152 ~~i~~~~fle~~~~~-----g~~YGts~~~i~---~v~~~gk~~vldv~~~~v----~~L~~~~~~p~vIfI~pps~~~l  219 (330)
                      ..+..+..+++..|.     +..|+.....+.   .+......+|++.-.-+.    ..++  ......|||.+|...++
T Consensus        85 ~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~--~~~D~~IfV~a~~~~rl  162 (290)
T 1a7j_A           85 REYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIA--GLADLKIGVVPVINLEW  162 (290)
T ss_dssp             HHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCG--GGCSEEEEEEECHHHHH
T ss_pred             HHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHH--HhCCEEEEEECCHHHHH
Confidence            133445566665551     244554433221   111234556655322110    0111  12358999999865444

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.92  E-value=1.6e-05  Score=70.69  Aligned_cols=23  Identities=22%  Similarity=0.599  Sum_probs=21.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+||+||||||++++|.+.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.90  E-value=0.00013  Score=63.02  Aligned_cols=25  Identities=8%  Similarity=0.235  Sum_probs=22.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +.|+|+|++||||||+++.|.+.+.
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4899999999999999999988653

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.89  E-value=4.9e-05  Score=67.96  Aligned_cols=26  Identities=15%  Similarity=0.387  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..|+|+|++||||||+++.|.+.+
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45689999999999999999998754

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=97.87  E-value=8.6e-05  Score=65.67  Aligned_cols=162  Identities=14%  Similarity=0.246  Sum_probs=81.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      |++.|+|-|+-||||||+++.|.+.+...+   -.++||.|.....         -+.+.+.+..+.-+... ..--+|.
T Consensus         1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~~~---~v~~~~eP~~t~~---------g~~ir~~l~~~~~~~~~-~~~lLf~   67 (205)
T 4hlc_A            1 MSAFITFEGPEGSGKTTVINEVYHRLVKDY---DVIMTREPGGVPT---------GEEIRKIVLEGNDMDIR-TEAMLFA   67 (205)
T ss_dssp             -CEEEEEECCTTSCHHHHHHHHHHHHTTTS---CEEEEESSTTCHH---------HHHHHHHHHSSCCCCHH-HHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHCCC---CEEEeeCCCCChH---------HHHHHHHHhcccCCCHH-HHHHHHH
Confidence            456899999999999999999988764322   2356787753221         01222222222100000 0000111


Q ss_pred             cc-----HHHHHHHHHhCCeEEEEeCH---------------HHHHHHHh---cCCCC-EEEEEccCcc---ccccCc--
Q psy933          172 TK-----LETIRRIHQEGKIAILDVEP---------------QALKILRT---GEFSP-FVVFIAAPQL---QNLSDY--  222 (330)
Q Consensus       172 ts-----~~~i~~v~~~gk~~vldv~~---------------~~v~~L~~---~~~~p-~vIfI~pps~---~~l~~~--  222 (330)
                      ..     ...|...+++|+++|.|=-.               +-+..|..   ..+.| .+||+..|.-   +++...  
T Consensus        68 a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~  147 (205)
T 4hlc_A           68 ASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSR  147 (205)
T ss_dssp             HHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCC
Confidence            11     23355567788888877432               22333332   23444 5788886632   222110  


Q ss_pred             -----h-H--H-HHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933          223 -----D-G--S-LEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       223 -----~-e--~-~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                           + +  + .+++.+...++-..++..+ .+|..+ ++++..+++.++|.+.
T Consensus       148 ~~dr~e~~~~~f~~~v~~~Y~~l~~~~~~~~-~~IDa~~~~e~V~~~i~~~i~~~  201 (205)
T 4hlc_A          148 DQNRLDQEDLKFHEKVIEGYQEIIHNESQRF-KSVNADQPLENVVEDTYQTIIKY  201 (205)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHSCCTTE-EEEETTSCHHHHHHHHHHHHHHH
T ss_pred             cccchhccCHHHHHHHHHHHHHHHHhCCCCE-EEEECCCCHHHHHHHHHHHHHHH
Confidence                 1 1  1 1333333333333333322 234434 8999999988887654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.86  E-value=9.9e-05  Score=65.81  Aligned_cols=53  Identities=13%  Similarity=0.239  Sum_probs=33.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCcccccc--ccccCCCCc--ccCCeeEEEeccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP--HTTRSPRSD--EENGRAYYFISHD  148 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~--~TTR~pr~~--E~~G~dy~fvs~~  148 (330)
                      ..|+|+|++|||||||.++|+....  +....+  .+|+.+...  +.+|..+.+++..
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTp   86 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRKV--FHSGTAAKSITKKCEKRSSSWKETELVVVDTP   86 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSCC--SCC-------CCSCEEEEEEETTEEEEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCCc--CccCCCCCceeeeEEEEEEEeCCceEEEEECC
Confidence            5799999999999999999997643  222222  455544322  3456666665543

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=97.85  E-value=2.4e-05  Score=80.49  Aligned_cols=153  Identities=18%  Similarity=0.299  Sum_probs=78.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc-ceeeEEeecCccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN-QYLEYGTHEDAMY  170 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~-~fle~~~~~g~~Y  170 (330)
                      ++..|+|+|++||||||+++.|.+....                  .|..++.++.+.+...+..+ .|-.  +.....+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~------------------~G~~~v~lDgD~iR~~L~~~~~fs~--~dree~~  110 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVC------------------HGIPCYTLDGDNIRQGLNKNLGFSP--EDREENV  110 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH------------------TTCCEEEESHHHHTTTTTTTCCSSH--HHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHh------------------cCCeEEEechHHhhhccCccccCCh--hhhHHHH
Confidence            5678999999999999999999886521                  12223333333322211111 0100  0000001


Q ss_pred             cccHHHHHHHHHhCCeEEEEe-CH-----HHHHHHHh-cCCCCEEEEEccCccccccCchHHHHHHHHHH--------HH
Q psy933          171 GTKLETIRRIHQEGKIAILDV-EP-----QALKILRT-GEFSPFVVFIAAPQLQNLSDYDGSLEKLAKES--------DI  235 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv-~~-----~~v~~L~~-~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~--------~~  235 (330)
                      -.-.+.++..++.|.+++.+. .+     +.++.+.. .+...++|||..|. +.+.+...  +++++..        ..
T Consensus       111 r~i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~-Evl~~Rl~--r~ly~~aR~~~~~~~~~  187 (630)
T 1x6v_B          111 RRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPL-HVCEQRDV--KGLYKKARAGEIKGFTG  187 (630)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCH-HHHHHHCT--TSHHHHHTTC----CBT
T ss_pred             HHHHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCH-HHHHHHhc--cccchhhhhhhHHHHHH
Confidence            000122234457888888773 22     23333333 33345689999863 22211000  0111110        11


Q ss_pred             HHhhcc--ccceEEEecC--CHHHHHHHHHHHHHHh
Q psy933          236 LKSAYE--HFFDLTVVNN--DIEETIGILEKAIEEL  267 (330)
Q Consensus       236 ie~~~~--~~fD~vI~N~--dle~a~~~L~~~i~~~  267 (330)
                      +...|.  ...|.+|.++  ++++++++|.+.|...
T Consensus       188 ~~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~~  223 (630)
T 1x6v_B          188 IDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQER  223 (630)
T ss_dssp             TTBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHHT
T ss_pred             hhhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHhc
Confidence            222343  3567888875  8999999999998764

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.85  E-value=3.6e-05  Score=67.11  Aligned_cols=26  Identities=15%  Similarity=0.354  Sum_probs=22.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +..|+|+||+|||||||++.|...++
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999999988653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.83  E-value=7.2e-05  Score=73.37  Aligned_cols=57  Identities=32%  Similarity=0.588  Sum_probs=40.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMM  151 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~  151 (330)
                      ..|+|+|++|||||||.++|+.... .+....+.|||.+..++  .+|.++.+++...+.
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~-~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~  239 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR  239 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETTEEEEESSCSCC-
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcc-cccCCCCCCcCCceEEEEEECCEEEEEEECCCCc
Confidence            4799999999999999999987643 24677889999988774  488888888776553

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.83  E-value=0.00014  Score=64.19  Aligned_cols=24  Identities=25%  Similarity=0.533  Sum_probs=22.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..|+|+|++||||||+++.|.+.+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999998875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.82  E-value=7.7e-06  Score=70.11  Aligned_cols=25  Identities=32%  Similarity=0.466  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .+..|+|+||+|||||||++.|...
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            4578999999999999999999875

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.78  E-value=3.2e-05  Score=67.07  Aligned_cols=32  Identities=34%  Similarity=0.453  Sum_probs=24.9

Q ss_pred             ccccceEEEecC-CHHHHHHHHHHHHHHhcCCC
Q psy933          240 YEHFFDLTVVNN-DIEETIGILEKAIEELHTTP  271 (330)
Q Consensus       240 ~~~~fD~vI~N~-dle~a~~~L~~~i~~~~~~~  271 (330)
                      |....|++|.|+ +++++++++.+++..+...|
T Consensus       164 ~~~~ad~vId~~~~~~~~~~~i~~~l~~~~~~~  196 (204)
T 2if2_A          164 KVKYADYVIDNSGSIEETYKQVKKVYEELTRDP  196 (204)
T ss_dssp             HGGGCSEECCCSSCHHHHHHHHHHHHHTTCC--
T ss_pred             HHhcCCEEEECCCCHHHHHHHHHHHHHHHhcCh
Confidence            345578999888 89999999999998776554

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.76  E-value=2.4e-05  Score=72.18  Aligned_cols=25  Identities=24%  Similarity=0.476  Sum_probs=22.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++.|+|+||+||||||++++|.+.+
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~   26 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKN   26 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhC
Confidence            4589999999999999999998854

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.76  E-value=1.2e-05  Score=68.52  Aligned_cols=26  Identities=23%  Similarity=0.357  Sum_probs=22.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++..|+|+|++||||||+++.|....
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998754

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.72  E-value=4.2e-05  Score=69.11  Aligned_cols=31  Identities=6%  Similarity=0.079  Sum_probs=23.4

Q ss_pred             ccCCCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           88 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        88 ~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ++...+..|+|+|++||||||+++.|.+.+.
T Consensus        17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           17 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             ----CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ccCCCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3333445799999999999999999988654

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.69  E-value=0.00014  Score=64.08  Aligned_cols=26  Identities=27%  Similarity=0.512  Sum_probs=23.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +..|+|+||+||||||++++|.+.+.
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999998753

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.68  E-value=6.8e-05  Score=66.45  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=21.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+||+||||+|++++|.+.+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999876

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.65  E-value=0.00034  Score=60.83  Aligned_cols=45  Identities=22%  Similarity=0.301  Sum_probs=31.3

Q ss_pred             ccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCC
Q psy933           88 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSP  132 (330)
Q Consensus        88 ~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~p  132 (330)
                      ++......|+|+|++|||||||.++|.......+....+.||+..
T Consensus        24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~   68 (223)
T 4dhe_A           24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI   68 (223)
T ss_dssp             SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce
Confidence            344445689999999999999999998764212344455566654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.54  E-value=0.00093  Score=56.57  Aligned_cols=29  Identities=31%  Similarity=0.478  Sum_probs=24.2

Q ss_pred             ccCCCCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           88 LPSFKRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        88 ~~~~~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ++......|+|+|++|||||||.++|...
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           18 YPEGGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44445568999999999999999999865

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.50  E-value=0.00053  Score=61.00  Aligned_cols=26  Identities=31%  Similarity=0.429  Sum_probs=22.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +..|+|+|++||||||+++.|.+.+.
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999998753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.42  E-value=0.00048  Score=62.28  Aligned_cols=25  Identities=16%  Similarity=0.355  Sum_probs=22.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +..|+|.||+|||||||++.|.+.+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999998765

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.39  E-value=0.0012  Score=58.03  Aligned_cols=60  Identities=25%  Similarity=0.296  Sum_probs=32.5

Q ss_pred             eecccC--CCCCEEEEEcCCCccHHHHHHHHHhhCCCCcc-ccccccccCCCCcc--cCCeeEEEecc
Q psy933           85 VVKLPS--FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYA-YPVPHTTRSPRSDE--ENGRAYYFISH  147 (330)
Q Consensus        85 V~~~~~--~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~-~~v~~TTR~pr~~E--~~G~dy~fvs~  147 (330)
                      +.++|.  .....|+|+|++|||||||+++|....   |. ...+.||+....+.  .++..+.+++.
T Consensus        19 ~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt   83 (228)
T 2qu8_A           19 FQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRAN---VDVQSYSFTTKNLYVGHFDHKLNKYQIIDT   83 (228)
T ss_dssp             ---CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTC---EEEECC-----CEEEEEEEETTEEEEEEEC
T ss_pred             eccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCC---CccCCCCCcceeeeeeeeecCCCeEEEEEC
Confidence            344554  334579999999999999999998652   32 33556666443221  23444445443

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.39  E-value=0.0028  Score=53.27  Aligned_cols=27  Identities=22%  Similarity=0.410  Sum_probs=23.2

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .....|+|+|++|||||||.++|....
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCc
Confidence            344679999999999999999998765

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=97.32  E-value=0.00044  Score=70.42  Aligned_cols=152  Identities=16%  Similarity=0.191  Sum_probs=77.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCC-eeEEEecccchhhHHhcc-ceeeEEeecCcc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENG-RAYYFISHDEMMSDIAAN-QYLEYGTHEDAM  169 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G-~dy~fvs~~~f~~~i~~~-~fle~~~~~g~~  169 (330)
                      ++..|+|+|++||||||+++.|.+.+..                  .| ..+++++.+.+...+..+ .|-.. +...+ 
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~------------------~G~~~~~~lD~D~ir~~l~~~~~f~~~-er~~~-  454 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLNQ------------------QGGRSVSLLLGDTVRHELSSELGFTRE-DRHTN-  454 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH------------------HCSSCEEEEEHHHHHHHTCTTCCCSHH-HHHHH-
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhcc------------------cCCceEEEECcHHHHHHhccccCCChh-HHHHH-
Confidence            4457999999999999999999876431                  02 345556555554432111 01000 00000 


Q ss_pred             ccccHHHHHHHHHhCCeEEEEeCH------HHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHH--HHHH----
Q psy933          170 YGTKLETIRRIHQEGKIAILDVEP------QALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKES--DILK----  237 (330)
Q Consensus       170 YGts~~~i~~v~~~gk~~vldv~~------~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~--~~ie----  237 (330)
                      +..-...++.+++.|.++|.+.-.      +.++.+-......++||+..|- +.+.+..  .+.+.+..  ..++    
T Consensus       455 i~ri~~v~~~~~~~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~-ev~~~R~--~r~l~~~~~~~~i~~~~~  531 (573)
T 1m8p_A          455 IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPL-EHCEQSD--KRGIYAAARRGEIKGFTG  531 (573)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCH-HHHHHHC--SSCHHHHHHTTSSSSCBT
T ss_pred             HHHHHHHHHHHHhCCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCH-HHHHHHh--cccchhhhhHHHHHHHHh
Confidence            000012344556778888887532      1222222211123789998763 2221100  00122111  0111    


Q ss_pred             --hhcc--ccceEEEecC--CHHHHHHHHHHHHHH
Q psy933          238 --SAYE--HFFDLTVVNN--DIEETIGILEKAIEE  266 (330)
Q Consensus       238 --~~~~--~~fD~vI~N~--dle~a~~~L~~~i~~  266 (330)
                        ..|.  ...|.+|.++  ++++++++|...+..
T Consensus       532 ~r~~~~~p~~~dl~IDts~~s~eevv~~Il~~l~~  566 (573)
T 1m8p_A          532 VDDPYETPEKADLVVDFSKQSVRSIVHEIILVLES  566 (573)
T ss_dssp             TTBCCCCCSSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence              1122  2457888765  799999999998875

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.28  E-value=0.0007  Score=68.63  Aligned_cols=26  Identities=19%  Similarity=0.436  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..|+|+|++|||||||++.|....
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhh
Confidence            45789999999999999999998765

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.25  E-value=0.0007  Score=63.19  Aligned_cols=54  Identities=19%  Similarity=0.212  Sum_probs=36.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cC-CeeEEEeccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--EN-GRAYYFISHD  148 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~-G~dy~fvs~~  148 (330)
                      -.|+|+|++|||||||.++|+.... ......+.|||..-.+-  .+ +..+.|++..
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~~~-~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTP   67 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGTKV-SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTP   67 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTTEEEEEEECC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCc-cccCCCCCceeeEEEEEEecCCCCeEEEEECc
Confidence            3799999999999999999986532 12345667887654432  23 5555666543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.24  E-value=6.5e-05  Score=83.38  Aligned_cols=79  Identities=16%  Similarity=0.278  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      .+..|+|+||||||||||++.|.+.++             |..|+  +||+|..-++.+.+.+.   +.+..+|..|+..
T Consensus      1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~-------------p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIr 1170 (1321)
T 4f4c_A         1104 PGQTLALVGPSGCGKSTVVALLERFYD-------------TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIA 1170 (1321)
T ss_dssp             TTCEEEEECSTTSSTTSHHHHHTTSSC-------------CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCcc-------------CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHH
Confidence            467899999999999999998887653             44554  48988777777776653   4588999999999


Q ss_pred             Cc-cccc-----cHHHHHHHHHh
Q psy933          167 DA-MYGT-----KLETIRRIHQE  183 (330)
Q Consensus       167 g~-~YGt-----s~~~i~~v~~~  183 (330)
                      .| .||.     +.+.|.++++.
T Consensus      1171 eNI~~gld~~~~sd~ei~~Al~~ 1193 (1321)
T 4f4c_A         1171 ENIIYGLDPSSVTMAQVEEAARL 1193 (1321)
T ss_dssp             HHHSSSSCTTTSCHHHHHHHHHH
T ss_pred             HHHhccCCCCCCCHHHHHHHHHH
Confidence            88 5883     44556555543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.24  E-value=8.9e-05  Score=69.76  Aligned_cols=28  Identities=29%  Similarity=0.517  Sum_probs=24.0

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..++|+||+|+|||||++.|...++
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            3568999999999999999998876654

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=97.22  E-value=0.0015  Score=57.20  Aligned_cols=158  Identities=13%  Similarity=0.169  Sum_probs=83.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc---
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG---  171 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG---  171 (330)
                      .|+|-|+-||||||.++.|.+.+... +. --.+||.|.....         -+.+...+..+.+-...+.  -+|.   
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~-g~-~v~~treP~~t~~---------~~~ir~~l~~~~~~~~~~~--ll~~a~r   68 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKR-GK-KVILKREPGGTET---------GEKIRKILLEEEVTPKAEL--FLFLASR   68 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHT-TC-CEEEEESSCSSHH---------HHHHHHHHHHSCCCHHHHH--HHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC-CC-cEEEEECCCCCcH---------HHHHHHHhhcccCChHHHH--HHHHHHH
Confidence            58899999999999999988765421 11 2256787753221         1222222222221100000  0111   


Q ss_pred             -ccHHHHHHHHHhCCeEEEEeCHHH---------------HHHHHh---cCCC-CEEEEEccCcccccc--------Cch
Q psy933          172 -TKLETIRRIHQEGKIAILDVEPQA---------------LKILRT---GEFS-PFVVFIAAPQLQNLS--------DYD  223 (330)
Q Consensus       172 -ts~~~i~~v~~~gk~~vldv~~~~---------------v~~L~~---~~~~-p~vIfI~pps~~~l~--------~~~  223 (330)
                       .....|...+++|+++|.|=-..+               +..|..   ..+. ..+||+..|.-..++        +..
T Consensus        69 ~~~~~~I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e~~  148 (197)
T 3hjn_A           69 NLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKR  148 (197)
T ss_dssp             HHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTCCH
T ss_pred             HHHHHHHHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccccH
Confidence             123456777788999888853322               222222   2343 457777765322221        122


Q ss_pred             HHHHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHH
Q psy933          224 GSLEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEE  266 (330)
Q Consensus       224 e~~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~  266 (330)
                      +-.+++.+...++...++..+ .+|.++ ++++..++|.++|++
T Consensus       149 ef~~rv~~~y~~la~~~~~~~-~~IDa~~~~eeV~~~I~~~i~~  191 (197)
T 3hjn_A          149 EFLERVREGYLVLAREHPERI-VVLDGKRSIEEIHRDVVREVKR  191 (197)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTE-EEEETTSCHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhCCCCE-EEEcCCCCHHHHHHHHHHHHHH
Confidence            333555555555544444432 345444 899999998888753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.18  E-value=0.00034  Score=58.93  Aligned_cols=52  Identities=19%  Similarity=0.278  Sum_probs=33.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEec
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFIS  146 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs  146 (330)
                      ..|+|+|++|||||||.++|..... .+....+.||+..-.+  +.+|..+.+++
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~D   58 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDVLREHIHIDGMPLHIID   58 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSTTCCCSCEEEEEEETTEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc-ceeeCCCCceeceeeEEEEECCeEEEEEE
Confidence            4689999999999999999986532 1334455666644322  23444444443

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.17  E-value=0.001  Score=55.20  Aligned_cols=53  Identities=9%  Similarity=0.135  Sum_probs=32.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISH  147 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~  147 (330)
                      ...|+|+|++|||||||.++|......  ....+.+|......  +.+|..+.+++.
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt   62 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHSKVT--EQEAGGITQHIGAYQVTVNDKKITFLDT   62 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTTCSS--CSSCCSSSTTCCCCEEEETTEEEEESCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCccc--cCCCCceeEeeeEEEEEeCCceEEEEEC
Confidence            457999999999999999999865321  11223333333222  345555665554

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.15  E-value=0.00017  Score=62.07  Aligned_cols=50  Identities=10%  Similarity=0.114  Sum_probs=29.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccC---CeeEEE
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEEN---GRAYYF  144 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~---G~dy~f  144 (330)
                      +.++|+|++|||||||+.+|+..+.. .+..+...+..+...++|   |.|.+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~-~g~~v~~ik~~~~~~diD~~~g~D~~r   57 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVR-EGWRVGTVKHHGHGGEPARPEGVDSVR   57 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC---------------
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHh-cCCeeeEEEeCCCCcccccCCChhHHH
Confidence            58999999999999999999987642 234445555666555443   555544

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.07  E-value=0.00041  Score=57.78  Aligned_cols=38  Identities=26%  Similarity=0.343  Sum_probs=24.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR  133 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr  133 (330)
                      ..|+|+|++|||||||.++|.....  +....|.+|+.+.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~~--~~~~~~~~t~~~~   41 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGENV--YIGNWPGVTVEKK   41 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCSS--SCC-----CCCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCe--eccCCCCcceeee
Confidence            3689999999999999999986421  2233444555443

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=97.06  E-value=0.00027  Score=67.17  Aligned_cols=36  Identities=22%  Similarity=0.358  Sum_probs=30.7

Q ss_pred             chhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHh
Q psy933          282 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEEL  317 (330)
Q Consensus       282 ~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~  317 (330)
                      .++++.+.|+|+||.|||||||+.||.+|+++|...
T Consensus       286 ~ae~E~~~~~~~FDyvIVNDdLe~A~~~L~~iI~~~  321 (337)
T 4dey_A          286 AADKLAQCPPELFDVILDENQLEDACEHLADYLEAY  321 (337)
T ss_dssp             HHHHHHHSCGGGCSEEECCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCcccCCEEEECCCHHHHHHHHHHHHHHH
Confidence            345555678999999999999999999999999664

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.03  E-value=0.00046  Score=56.29  Aligned_cols=38  Identities=29%  Similarity=0.439  Sum_probs=22.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSP  132 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~p  132 (330)
                      +.|+|+|++|||||||.++|..... .+....+.||+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~   39 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRS-AVVADVPGVTRDL   39 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCe-eeccCCCCceecc
Confidence            3589999999999999999997653 2333444555543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.02  E-value=0.00014  Score=80.76  Aligned_cols=79  Identities=18%  Similarity=0.224  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      ++..++|+||||||||||++.|...++             |..|+  +||.|..-++.+.+.+.   +.+..+|..++..
T Consensus       443 ~G~~vaivG~sGsGKSTll~ll~~~~~-------------~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~  509 (1321)
T 4f4c_A          443 AGQTVALVGSSGCGKSTIISLLLRYYD-------------VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIE  509 (1321)
T ss_dssp             TTCEEEEEECSSSCHHHHHHHHTTSSC-------------CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHH
T ss_pred             CCcEEEEEecCCCcHHHHHHHhccccc-------------cccCcccCCCccchhccHHHHhhcccccCCcceeeCCchh
Confidence            568999999999999999998887764             34444  47877666666665553   3588899999999


Q ss_pred             Cc-cccc---cHHHHHHHHHh
Q psy933          167 DA-MYGT---KLETIRRIHQE  183 (330)
Q Consensus       167 g~-~YGt---s~~~i~~v~~~  183 (330)
                      +| .||.   +.+.+.++++.
T Consensus       510 eNI~~g~~~~~~~~v~~a~~~  530 (1321)
T 4f4c_A          510 ENISLGKEGITREEMVAACKM  530 (1321)
T ss_dssp             HHHHTTCTTCCHHHHHHHHHH
T ss_pred             HHHhhhcccchHHHHHHHHHH
Confidence            88 5885   45556655543

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.99  E-value=0.002  Score=64.74  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=22.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++..|+|+|++|+||||++++|.+.+
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L   59 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYL   59 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.98  E-value=0.0068  Score=59.14  Aligned_cols=56  Identities=20%  Similarity=0.307  Sum_probs=35.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM  150 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f  150 (330)
                      ..|+|+|.+|||||||.++|+.... ......+.|||..-..  +.+|..+.++|..-+
T Consensus       176 ~ki~lvG~~nvGKSSLin~l~~~~~-~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~  233 (436)
T 2hjg_A          176 IQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM  233 (436)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTT-EEEC---------CCEEEEETTEEEEETTHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCCCc-eeecCCCCceeeeeEEEEEECCeEEEEEECCCc
Confidence            4799999999999999999997532 1245677888876543  457777888876554

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.96  E-value=0.00046  Score=59.83  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=23.8

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..+..|+|+||||||||||++.|....
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            346799999999999999999998765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.95  E-value=0.0058  Score=52.28  Aligned_cols=23  Identities=22%  Similarity=0.563  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .-|+|+|++|||||||+++|...
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.95  E-value=0.0077  Score=59.10  Aligned_cols=163  Identities=11%  Similarity=0.149  Sum_probs=80.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY  170 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y  170 (330)
                      ..-|+|+|.+|||||||.++|..... .+....+.||+..-..  +.+|..+.++|..-+.+........       ..|
T Consensus       195 ~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~-------e~~  266 (456)
T 4dcu_A          195 VIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETT-------EKY  266 (456)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCC-------SHH
T ss_pred             cceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHH-------HHH
Confidence            34689999999999999999986532 3456677888877544  4578888888876654221111111       112


Q ss_pred             cccHHHHHHHHHhCCeEEEEeCHH---------HHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhhcc
Q psy933          171 GTKLETIRRIHQEGKIAILDVEPQ---------ALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYE  241 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~~~---------~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~~~  241 (330)
                      .. ..+ ...+.....+|+.+|..         -+..+.. .-.|++|.+.--+.  ........+++.+..+..-. +.
T Consensus       267 ~~-~~~-~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl--~~~~~~~~~~~~~~~~~~~~-~~  340 (456)
T 4dcu_A          267 SV-LRA-LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AGKAVVIVVNKWDA--VDKDESTMKEFEENIRDHFQ-FL  340 (456)
T ss_dssp             HH-HHH-HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTCEEEEEEECGGG--SCCCSSHHHHHHHHHHHHCG-GG
T ss_pred             HH-HHH-HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH-cCCCEEEEEEChhc--CCCchHHHHHHHHHHHHhcc-cC
Confidence            21 111 12344556666655431         1233333 33566665542221  11112222233332222111 11


Q ss_pred             ccceEEE----ecCCHHHHHHHHHHHHHHhcC
Q psy933          242 HFFDLTV----VNNDIEETIGILEKAIEELHT  269 (330)
Q Consensus       242 ~~fD~vI----~N~dle~a~~~L~~~i~~~~~  269 (330)
                      ....++-    .+.++++.+..|.+.+.....
T Consensus       341 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          341 DYAPILFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             TTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            1223332    234899999988888765543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.92  E-value=0.0047  Score=51.58  Aligned_cols=23  Identities=22%  Similarity=0.432  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .-|+|+|++|||||||+++|...
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.92  E-value=0.0005  Score=69.84  Aligned_cols=27  Identities=30%  Similarity=0.532  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|...++
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            567999999999999999999887654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.91  E-value=0.00051  Score=58.70  Aligned_cols=37  Identities=57%  Similarity=0.929  Sum_probs=32.3

Q ss_pred             chhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHhc
Q psy933          282 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELH  318 (330)
Q Consensus       282 ~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~~  318 (330)
                      ..+.|+..|.|+||.+|+|||++.|+.+|.++|.+++
T Consensus       144 ~~~~~~~~~~~~~d~~i~n~~~~~~~~~l~~~i~~~~  180 (180)
T 1kgd_A          144 ESDILQRTYAHYFDLTIINNEIDETIRHLEEAVELVC  180 (180)
T ss_dssp             HHHHHHHHHGGGCSEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhhCCCcEEEECcCHHHHHHHHHHHHHHhC
Confidence            3456766799999999999999999999999998864

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.91  E-value=0.00057  Score=61.51  Aligned_cols=28  Identities=14%  Similarity=0.196  Sum_probs=23.8

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..++|+||+|||||||.+.|....+
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3568999999999999999998876553

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.88  E-value=0.022  Score=48.24  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=20.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      --|+|+|++|||||||+++|...
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999875

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.87  E-value=0.0004  Score=60.32  Aligned_cols=27  Identities=15%  Similarity=0.284  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..|+|+||+|||||||++.|...++
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346899999999999999999988643

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.87  E-value=0.019  Score=46.18  Aligned_cols=22  Identities=41%  Similarity=0.706  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+++|++|||||||+++|...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999865

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.0012  Score=63.83  Aligned_cols=54  Identities=15%  Similarity=0.145  Sum_probs=44.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM  150 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f  150 (330)
                      .|+|+|.++||||||.|.|....+  .....|.||+.|-.|  +.+|..+.|++..-+
T Consensus        74 ~V~ivG~PNvGKSTL~n~Lt~~~~--~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl  129 (376)
T 4a9a_A           74 SVGFVGFPSVGKSTLLSKLTGTES--EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGI  129 (376)
T ss_dssp             EEEEECCCCHHHHHHHHHHHSBCC--CGGGTCSSCCCEEEEEEEETTEEEEEEECGGG
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeeeeeEEEEeCCcEEEEEeCCCc
Confidence            699999999999999999998765  356678999999877  457778888877655

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=96.81  E-value=0.0011  Score=58.91  Aligned_cols=27  Identities=11%  Similarity=0.010  Sum_probs=23.8

Q ss_pred             cccceEEEecC--CHHHHHHHHHHHHHHh
Q psy933          241 EHFFDLTVVNN--DIEETIGILEKAIEEL  267 (330)
Q Consensus       241 ~~~fD~vI~N~--dle~a~~~L~~~i~~~  267 (330)
                      ....|+||.|+  +++++.+++..+++++
T Consensus       174 ~~~AD~VIdN~~gsle~l~~qV~~l~~~~  202 (210)
T 4i1u_A          174 LAAADDVIVNDAATPDALAVQVDALHQRY  202 (210)
T ss_dssp             HHTCSEEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             HHhCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            36789999998  8999999999998876

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.81  E-value=0.0071  Score=50.41  Aligned_cols=22  Identities=41%  Similarity=0.733  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.79  E-value=0.0006  Score=59.56  Aligned_cols=27  Identities=30%  Similarity=0.514  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..|+|+||||||||||++.|...++
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456999999999999999999987754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.79  E-value=0.059  Score=44.88  Aligned_cols=22  Identities=36%  Similarity=0.502  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|+..
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.78  E-value=0.016  Score=48.25  Aligned_cols=22  Identities=32%  Similarity=0.626  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999864

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.78  E-value=0.00067  Score=59.41  Aligned_cols=24  Identities=13%  Similarity=0.394  Sum_probs=21.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..|+|+||+||||||+++.|.+.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999998764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.77  E-value=0.015  Score=48.94  Aligned_cols=22  Identities=27%  Similarity=0.576  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=96.76  E-value=0.0047  Score=60.35  Aligned_cols=40  Identities=25%  Similarity=0.393  Sum_probs=30.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD  135 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~  135 (330)
                      ..|+|+|++|||||||++.|....|  .....+.||..|..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~--~i~~~~ftTl~p~~G  197 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLG  197 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCC--EECCCTTCSSCCEEE
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCc--cccCcccceecceee
Confidence            5699999999999999999987755  223456777777554

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.76  E-value=0.00096  Score=61.27  Aligned_cols=27  Identities=15%  Similarity=0.428  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|||||||.+.|....+
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            568999999999999999998886653

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.76  E-value=0.001  Score=57.98  Aligned_cols=125  Identities=14%  Similarity=0.083  Sum_probs=69.8

Q ss_pred             ccccccHHHHHHHHHhCCeEEEE--------eCHHHHHHHHhcCCCCEEEE-EccCccccccCchHHHHHHHHHHHHHHh
Q psy933          168 AMYGTKLETIRRIHQEGKIAILD--------VEPQALKILRTGEFSPFVVF-IAAPQLQNLSDYDGSLEKLAKESDILKS  238 (330)
Q Consensus       168 ~~YGts~~~i~~v~~~gk~~vld--------v~~~~v~~L~~~~~~p~vIf-I~pps~~~l~~~~e~~~rl~~~~~~ie~  238 (330)
                      ++|-.+.+..++.+++|...--.        ...+.+...-..+.  .+|+ |.+                 +....+..
T Consensus        49 dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~~~v~~~l~~g~--~vil~id~-----------------~g~~~~k~  109 (186)
T 1ex7_A           49 DYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGK--TCILDIDM-----------------QGVKSVKA  109 (186)
T ss_dssp             TBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHHTS--EEEEECCH-----------------HHHHHHHT
T ss_pred             eeEeecHHHHHHHHHcCCEEEEEEEcCceeeeecceeeehhhCCC--EEEecCCH-----------------HHHHHHHH
Confidence            57889999999999999864321        23445555444443  2222 221                 11122222


Q ss_pred             hccccceEE-EecCCHHHHHHHHHHHHHHhcCCCccccccccccchhhhhhhccceeeEEEEcCCHHHHHHHHHHHHH
Q psy933          239 AYEHFFDLT-VVNNDIEETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIE  315 (330)
Q Consensus       239 ~~~~~fD~v-I~N~dle~a~~~L~~~i~~~~~~~~WvP~sw~~~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~  315 (330)
                      .++...-.| |.-.+++..-+.|..-    .++..=.=...|......|+..+.+.||.|||||||+.|+.+|+++|.
T Consensus       110 ~~~~~~~~Ifi~pps~e~L~~RL~~R----g~e~~e~i~~Rl~~a~~e~~~~~~~~fD~vIvNddle~a~~~l~~iI~  183 (186)
T 1ex7_A          110 IPELNARFLFIAPPSVEDLKKRLEGR----GTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDFIF  183 (186)
T ss_dssp             CGGGCCEEEEEECSCHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHHTTTCSSEEEECSSHHHHHHHHHHHHT
T ss_pred             hcccCceEEEEeCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHhhccccCCcEEEECcCHHHHHHHHHHHHH
Confidence            233222223 3344666555444321    111110001133344556777778899999999999999999999874

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.75  E-value=0.013  Score=49.58  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=21.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+|+|++|||||||+++|....
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            68999999999999999998764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.75  E-value=0.00089  Score=61.58  Aligned_cols=51  Identities=14%  Similarity=0.162  Sum_probs=36.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccC-CeeEEEec
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEEN-GRAYYFIS  146 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~-G~dy~fvs  146 (330)
                      ..|+|+|++|||||||.++|....  .+....|.||..+..+..+ |..+.+++
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~~~~~~~~~~~l~l~D   55 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVERKSGLVKKNKDLEIQD   55 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSCEEEECTTCTTEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEEEEEEEecCCeEEEEE
Confidence            468999999999999999998653  2455566777776666554 33444544

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=96.73  E-value=0.0067  Score=54.98  Aligned_cols=69  Identities=14%  Similarity=0.185  Sum_probs=43.1

Q ss_pred             CCeEEEEeCHH-HHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHh-hccccceEEEecC-CHHHHHHHH
Q psy933          184 GKIAILDVEPQ-ALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS-AYEHFFDLTVVNN-DIEETIGIL  260 (330)
Q Consensus       184 gk~~vldv~~~-~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~-~~~~~fD~vI~N~-dle~a~~~L  260 (330)
                      +.++|+++... -+++++..+  ..+++|..+....+...            .-+. .+....|+||.|+ +++++.+++
T Consensus       169 d~VvVvdv~~~~qieRl~~rg--~~~v~i~~~~~~~i~~Q------------~se~~~k~~~AD~VI~N~gsle~l~~qV  234 (241)
T 1dek_A          169 DYYIVPDTRQDHEMDAARAMG--ATVIHVVRPGQKSNDTH------------ITEAGLPIRDGDLVITNDGSLEELFSKI  234 (241)
T ss_dssp             SEEEECCCCSHHHHHHHHHTT--CEEEEEECTTCCCSCCS------------GGGSCCCCCTTCEEEECCSCHHHHHHHH
T ss_pred             CEEEEEcCCcHHHHHHHHHCC--CceEEEECcccchhhcC------------CCcccccccCCCEEEECCCCHHHHHHHH
Confidence            45666677654 367777753  36777776532111100            0011 2457899999998 799999999


Q ss_pred             HHHHHH
Q psy933          261 EKAIEE  266 (330)
Q Consensus       261 ~~~i~~  266 (330)
                      ..++++
T Consensus       235 ~~ll~~  240 (241)
T 1dek_A          235 KNTLKV  240 (241)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            988764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.73  E-value=0.00076  Score=60.37  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=22.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +..|+|+||+|||||||++.|.+.+
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999664

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.72  E-value=0.00073  Score=56.90  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=20.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ..|+|+|++|||||||.++|...
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.71  E-value=0.0011  Score=61.71  Aligned_cols=33  Identities=24%  Similarity=0.236  Sum_probs=25.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCcccccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP  126 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~  126 (330)
                      .+..++|+||||||||||++.|. ..+- -.+.|+
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~-~~G~i~  196 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GEEL-RTQEVS  196 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SCCC-CCSCC-
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-HhhC-cccccc
Confidence            45799999999999999999999 6542 344444

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=96.70  E-value=0.0043  Score=58.99  Aligned_cols=39  Identities=21%  Similarity=0.225  Sum_probs=30.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD  135 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~  135 (330)
                      -|+|+|.++||||||+++|....|  .....+.||..|..+
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~--~i~~~~ftTl~p~~g  198 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLG  198 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECC--EESSTTSSCCCCCEE
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCC--ccccCCccccCceEE
Confidence            488999999999999999987654  223456778777554

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.69  E-value=0.001  Score=61.51  Aligned_cols=27  Identities=19%  Similarity=0.436  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|||||||.+.|....+
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            467999999999999999998876554

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.68  E-value=0.0012  Score=63.37  Aligned_cols=52  Identities=19%  Similarity=0.231  Sum_probs=31.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISH  147 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~  147 (330)
                      +.|+|+|++|||||||.++|.....  .....+.||+.+..+.  .+|..+.+++.
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~--~~~~~~~~T~d~~~~~i~~~g~~v~l~DT  233 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQ--KVDTKLFTTMSPKRYAIPINNRKIMLVDT  233 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCc--cccCCcccccCCEEEEEEECCEEEEEEeC
Confidence            3599999999999999999987542  3445678888876553  35655555543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.67  E-value=0.00073  Score=57.35  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=19.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHH
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLI  114 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~  114 (330)
                      .+..++|+||+|||||||++.+.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc
Confidence            45789999999999999999743

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.022  Score=47.85  Aligned_cols=25  Identities=12%  Similarity=0.372  Sum_probs=22.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ...|+|+|++|||||||+++|....
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3579999999999999999998764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.66  E-value=0.00053  Score=69.65  Aligned_cols=27  Identities=26%  Similarity=0.482  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|...++
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence            568999999999999999998887654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.66  E-value=0.015  Score=48.82  Aligned_cols=22  Identities=41%  Similarity=0.706  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .|+|+|++|||||||+++|...
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999999865

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.65  E-value=0.0021  Score=62.86  Aligned_cols=56  Identities=23%  Similarity=0.371  Sum_probs=34.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM  150 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f  150 (330)
                      +.|+|+|.+|||||||.++|..... .+....|.|||....+  +.+|..+.++|..-+
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~   59 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGV   59 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC-ceecCCCCCccceeeEEEEECCeEEEEEECCCc
Confidence            4699999999999999999986542 2456678889887665  447888888776543

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.63  E-value=0.0012  Score=59.46  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            457999999999999999999887654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.62  E-value=0.043  Score=45.29  Aligned_cols=23  Identities=17%  Similarity=0.556  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .-|+|+|++|||||||+++|...
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            36899999999999999999864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.61  E-value=0.00034  Score=71.29  Aligned_cols=64  Identities=14%  Similarity=0.244  Sum_probs=39.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      .+..++|+||+|+|||||++.|...++             |..|++  +|.+..-++...+.+.   +.++.++..++..
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~-------------~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~  434 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRLID-------------PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIK  434 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTSSC-------------CSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcc-------------CCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHH
Confidence            568999999999999999998876654             334433  6665443343333332   2244444445555


Q ss_pred             Cc
Q psy933          167 DA  168 (330)
Q Consensus       167 g~  168 (330)
                      +|
T Consensus       435 en  436 (587)
T 3qf4_A          435 EN  436 (587)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.60  E-value=0.0016  Score=53.31  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+|+|++|||||||.++|....
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998764

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=96.60  E-value=0.0007  Score=50.03  Aligned_cols=32  Identities=16%  Similarity=0.569  Sum_probs=27.4

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||+|+++.|++||+++..+..+..|++|+...
T Consensus        34 ~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv   65 (76)
T 2ed1_A           34 VIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV   65 (76)
T ss_dssp             EEEESSCCSSSEEEEEETTCTTCEEEEEGGGE
T ss_pred             EEEEEEecCCCEEEEEECCCCCCEEEEehHHe
Confidence            57899999999999998766689999998664

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=96.60  E-value=0.0038  Score=62.16  Aligned_cols=56  Identities=23%  Similarity=0.360  Sum_probs=43.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM  150 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f  150 (330)
                      -.|+|+|++|||||||.++|..... .+....+.|||.+-..  +.+|..+.++|..-+
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~-a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~  301 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV  301 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCC
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCC-CccCCCCCeeeeeEEEEEecCCeEEEEEECCCc
Confidence            3699999999999999999998743 2567788999987665  347777777776543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.59  E-value=0.0018  Score=59.32  Aligned_cols=26  Identities=12%  Similarity=0.284  Sum_probs=22.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ...+++|.||+|+|||+|++.|.+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999887664

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.58  E-value=0.00026  Score=71.90  Aligned_cols=28  Identities=21%  Similarity=0.362  Sum_probs=23.8

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..++|+||+|+|||||.+.|...++
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            3568999999999999999998876654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.56  E-value=0.0012  Score=54.05  Aligned_cols=22  Identities=23%  Similarity=0.526  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.56  E-value=0.005  Score=57.68  Aligned_cols=25  Identities=16%  Similarity=0.456  Sum_probs=22.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+.|+|.||+|+|||+|++.|+...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CceEEEECCCCccHHHHHHHHHHHc
Confidence            3689999999999999999999875

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.56  E-value=0.063  Score=45.22  Aligned_cols=22  Identities=9%  Similarity=0.299  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|+..
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.55  E-value=0.0015  Score=60.38  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=21.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++.++|.||+|+|||+|++.|++..
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3578888999999999999998765

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.55  E-value=0.0019  Score=52.81  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+|+|++|||||||.++|....
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.53  E-value=0.0013  Score=54.27  Aligned_cols=22  Identities=36%  Similarity=0.665  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            5899999999999999999864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.53  E-value=0.0025  Score=53.61  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=22.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDK  120 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~  120 (330)
                      -|+|+|++|||||||++.|...++..
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~~~   41 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVPEG   41 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcccc
Confidence            68999999999999998887766543

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.52  E-value=0.0014  Score=63.20  Aligned_cols=28  Identities=14%  Similarity=0.132  Sum_probs=23.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..++|+||||||||||++.|....+
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence            3568999999999999999998876543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.52  E-value=0.0015  Score=56.18  Aligned_cols=24  Identities=17%  Similarity=0.607  Sum_probs=21.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .++|+||+|+|||||++.|+...+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999987763

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.51  E-value=0.0022  Score=62.70  Aligned_cols=55  Identities=18%  Similarity=0.212  Sum_probs=31.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDE  149 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~  149 (330)
                      ..|+|+|.+|||||||.++|..... ......|.|||....+  +.+|..+.++|..-
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G   60 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGG   60 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEEC-C-----------CEEEECTTCSSCCEEEC---
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCCccceEEEEEEECCceEEEEECCC
Confidence            5799999999999999999987532 1344567788876544  34566677776543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.51  E-value=0.0021  Score=52.58  Aligned_cols=22  Identities=32%  Similarity=0.567  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.50  E-value=0.0018  Score=62.14  Aligned_cols=27  Identities=22%  Similarity=0.367  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||||||||||.+.|+...+
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            567999999999999999998887654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.49  E-value=0.00073  Score=63.52  Aligned_cols=27  Identities=30%  Similarity=0.516  Sum_probs=22.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||||||||||++.|....+
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~~~  198 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPELG  198 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHhccccc
Confidence            468999999999999999999986543

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.47  E-value=0.0018  Score=54.76  Aligned_cols=28  Identities=18%  Similarity=0.342  Sum_probs=24.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      .+..++|+||+|+|||||.+.|+...|.
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l~~   59 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            4568999999999999999999987753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.46  E-value=0.0024  Score=60.99  Aligned_cols=28  Identities=21%  Similarity=0.522  Sum_probs=25.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      .+..++|+||+|+|||||++.|+..++.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            5679999999999999999999988763

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.46  E-value=0.0015  Score=64.20  Aligned_cols=56  Identities=16%  Similarity=0.206  Sum_probs=32.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDE  149 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~  149 (330)
                      .+.|+|+|.+|||||||.++|...... .....|.+||....+.  ..|..+.+++..-
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G   80 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGG   80 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCC
Confidence            357999999999999999999865321 2334567787765543  3566677776554

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.46  E-value=0.00095  Score=63.56  Aligned_cols=23  Identities=17%  Similarity=0.190  Sum_probs=21.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ..|+|+|++|||||||.++|...
T Consensus        75 ~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           75 FRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999999864

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=96.46  E-value=0.0012  Score=47.34  Aligned_cols=30  Identities=33%  Similarity=0.890  Sum_probs=25.0

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|++++|++||+++..  ++..|++||...
T Consensus        27 ~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~yv   56 (65)
T 1b07_A           27 ILRIRDKPEEQWWNAEDS--EGKRGMIPVPYV   56 (65)
T ss_dssp             EEEEEECSSSSEEEEECT--TSCEEEEEGGGE
T ss_pred             EEEEEEecCCCeEEEEEC--CCCEEEEChHHE
Confidence            578999999999999843  478999999653

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.44  E-value=0.0021  Score=54.92  Aligned_cols=23  Identities=26%  Similarity=0.559  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+||+|||||||+++|....
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.44  E-value=0.0014  Score=63.39  Aligned_cols=27  Identities=15%  Similarity=0.337  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||||||||||.+.|+...+
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence            567999999999999999999987654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.44  E-value=0.0014  Score=60.99  Aligned_cols=54  Identities=17%  Similarity=0.215  Sum_probs=34.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISH  147 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~  147 (330)
                      ...|+|+|++|||||||.++|+.... ......+.|||....+-  .++..+.|++.
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~-~i~s~~~~tTr~~~~gi~~~~~~~i~~iDT   63 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKI-SITSRKAQTTRHRIVGIHTEGAYQAIYVDT   63 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSE-EECCCCSSCCSSCEEEEEEETTEEEEEESS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCCCcceeeEEEEEEECCeeEEEEEC
Confidence            34799999999999999999986421 01233566777543321  13444555554

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.44  E-value=0.0017  Score=54.15  Aligned_cols=24  Identities=17%  Similarity=0.487  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ..-|+|+|++|||||||.++|...
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            347999999999999999999854

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.43  E-value=0.0016  Score=55.13  Aligned_cols=25  Identities=28%  Similarity=0.591  Sum_probs=22.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++.++|+||+|+|||||++.|+...
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            5799999999999999999988764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.42  E-value=0.0013  Score=53.88  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+|+|++|||||||.++|....
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            58999999999999999997543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.41  E-value=0.02  Score=49.27  Aligned_cols=25  Identities=12%  Similarity=0.372  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ...|+|+|++|||||||.++|....
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3579999999999999999998764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.41  E-value=0.0016  Score=53.55  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4899999999999999999753

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.41  E-value=0.0017  Score=57.81  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|||||||.+.|....+
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467999999999999999998876543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.40  E-value=0.0016  Score=59.14  Aligned_cols=52  Identities=15%  Similarity=0.137  Sum_probs=34.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISH  147 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~  147 (330)
                      +.|+|+|++|||||||.++|....  ......|.+|.....+  +.+|..+.+++.
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDt   55 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNAN--QRVGNWPGVTVEKKTGEFLLGEHLIEITDL   55 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTS--EEEEECTTSSSEEEEEEEEETTEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CCccCCCCceEEEEEEEEEECCeEEEEEeC
Confidence            468999999999999999998653  2334455666544333  224555555543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.37  E-value=0.0011  Score=56.83  Aligned_cols=25  Identities=12%  Similarity=0.324  Sum_probs=22.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +.++|+||||||||||++.|+..++
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            5899999999999999999988754

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.36  E-value=0.003  Score=58.82  Aligned_cols=38  Identities=26%  Similarity=0.382  Sum_probs=28.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSP  132 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~p  132 (330)
                      ..|+|+|.+|||||||.++|+.... ......|.|||..
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~~~-~ivs~~~~tTr~~   45 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGVKV-APISPRPQTTRKR   45 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCce-eeecCCCCceeEE
Confidence            4699999999999999999986532 1123466788754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.36  E-value=0.0024  Score=54.75  Aligned_cols=23  Identities=26%  Similarity=0.559  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+||+|||||||.++|....
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998753

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.33  E-value=0.032  Score=47.73  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            6899999999999999999864

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=96.33  E-value=0.001  Score=47.33  Aligned_cols=29  Identities=24%  Similarity=0.744  Sum_probs=23.9

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChh
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPE   31 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~   31 (330)
                      |+.|++++|++||.++..  +++.|++|+..
T Consensus        28 ~i~v~~~~~~~Ww~g~~~--~G~~G~fP~ny   56 (60)
T 2lx7_A           28 LITLLQVPDGGWWEGEKE--DGLRGWFPASY   56 (60)
T ss_dssp             EEEBSCCCTTSCEEEECT--TSCEEEECGGG
T ss_pred             EEEEeEecCCCeEEEEeC--CCCEEEEcHHH
Confidence            578899999999999852  46789999865

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.32  E-value=0.00096  Score=57.37  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=22.1

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ..+..|+|+|++|||||||.++|...
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            34567999999999999999998754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.31  E-value=0.0037  Score=56.09  Aligned_cols=54  Identities=17%  Similarity=0.308  Sum_probs=34.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCcccc-ccc-cccCCCC--cccCCeeEEEecccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYP-VPH-TTRSPRS--DEENGRAYYFISHDE  149 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~-v~~-TTR~pr~--~E~~G~dy~fvs~~~  149 (330)
                      ..|+|+|++|||||||.++|+...  .|... .+. ||+....  ...+|..+.+++..-
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG   80 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRKQ--AFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPD   80 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTSC--CSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCG
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCCceeeeeEEEEEEeCCCEEEEEECcC
Confidence            479999999999999999998643  23222 222 5554432  234566666666543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.30  E-value=0.0033  Score=58.45  Aligned_cols=27  Identities=26%  Similarity=0.407  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||||||||||++.|....+
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             cCCeEEEECCCCCcHHHHHHHhccccc
Confidence            457999999999999999999986543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.30  E-value=0.0021  Score=59.08  Aligned_cols=24  Identities=25%  Similarity=0.567  Sum_probs=21.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .++|+||+|+|||||++.|....+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            589999999999999999987643

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.30  E-value=0.0027  Score=52.81  Aligned_cols=27  Identities=30%  Similarity=0.530  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+.++|+||+|+|||+|++.+++...
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            347899999999999999999987653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.30  E-value=0.003  Score=60.61  Aligned_cols=27  Identities=22%  Similarity=0.431  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||||||||||++.|+...+
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhcccc
Confidence            457999999999999999999987654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.29  E-value=0.0022  Score=58.63  Aligned_cols=27  Identities=11%  Similarity=0.217  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|||||||.+.|....+
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            568999999999999999998876543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.29  E-value=0.0031  Score=60.72  Aligned_cols=27  Identities=19%  Similarity=0.340  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||||||||||.+.|+...+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence            567999999999999999998886653

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.29  E-value=0.0022  Score=58.04  Aligned_cols=27  Identities=11%  Similarity=0.357  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            567999999999999999998876653

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.29  E-value=0.003  Score=46.41  Aligned_cols=32  Identities=31%  Similarity=0.709  Sum_probs=25.7

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCc------eeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSA------GLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~------GlIPS~~~   32 (330)
                      ||+|++++|++||+++.....+..      |++|+...
T Consensus        31 ~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv   68 (77)
T 2d8j_A           31 KLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYV   68 (77)
T ss_dssp             CEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTE
T ss_pred             EEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHe
Confidence            689999999999999986432455      99999664

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.28  E-value=0.0036  Score=53.54  Aligned_cols=22  Identities=32%  Similarity=0.665  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=96.28  E-value=0.0021  Score=46.42  Aligned_cols=31  Identities=16%  Similarity=0.422  Sum_probs=25.4

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |+.|+++.|++||.++.. .+++.|++|+...
T Consensus        30 ~i~v~~~~~~gWw~g~~~-~~g~~G~~P~nyV   60 (65)
T 2lj0_A           30 IVDVMEKCDDGWFVGTSR-RTKQFGTFPGNYV   60 (65)
T ss_dssp             EEEEEEECTTSEEEEEET-TTCCEEEEETTSE
T ss_pred             EEEEeEeCCCCEEEEEEC-CCCCEEEEehhHe
Confidence            578999999999999864 3578999998653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.28  E-value=0.0019  Score=58.09  Aligned_cols=26  Identities=15%  Similarity=0.455  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..++|+||+|||||||.+.|....
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            56799999999999999999887654

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=96.27  E-value=0.03  Score=49.41  Aligned_cols=28  Identities=25%  Similarity=0.203  Sum_probs=23.7

Q ss_pred             ccceEEEecC-CHHHHHHHHHHHHHHhcC
Q psy933          242 HFFDLTVVNN-DIEETIGILEKAIEELHT  269 (330)
Q Consensus       242 ~~fD~vI~N~-dle~a~~~L~~~i~~~~~  269 (330)
                      ..+|++|+|| ++++..++|..++..++.
T Consensus       164 ~~~D~vI~Ndgt~eel~~~v~~ll~~~~~  192 (202)
T 3ch4_B          164 GDFDWVIENHGVEQRLEEQLENLIEFIRS  192 (202)
T ss_dssp             CCCSEEEEECSCHHHHHHHHHHHHHHHHT
T ss_pred             CcCCEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            3699999998 899999999988887653

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.27  E-value=0.0066  Score=59.59  Aligned_cols=26  Identities=19%  Similarity=0.425  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+|=|+|.||+|+|||+|++.|+...
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~~  230 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANST  230 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            34679999999999999999998764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.26  E-value=0.0024  Score=57.13  Aligned_cols=27  Identities=15%  Similarity=0.444  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            568999999999999999998876553

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.25  E-value=0.0029  Score=52.96  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4889999999999999999865

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.24  E-value=0.0011  Score=73.48  Aligned_cols=78  Identities=17%  Similarity=0.274  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      .+..++|+||||+|||||++.|...++             |..|+  ++|.+...++.....+.   +.+..++..++..
T Consensus       415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~-------------~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~  481 (1284)
T 3g5u_A          415 SGQTVALVGNSGCGKSTTVQLMQRLYD-------------PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIA  481 (1284)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHTTTSSC-------------CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC-------------CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHH
Confidence            568999999999999999998877654             33444  37776555554444332   2355555555555


Q ss_pred             Cc-cccc---cHHHHHHHHH
Q psy933          167 DA-MYGT---KLETIRRIHQ  182 (330)
Q Consensus       167 g~-~YGt---s~~~i~~v~~  182 (330)
                      +| .||.   +.+.+.++++
T Consensus       482 eNi~~g~~~~~~~~~~~~~~  501 (1284)
T 3g5u_A          482 ENIRYGREDVTMDEIEKAVK  501 (1284)
T ss_dssp             HHHHHHCSSCCHHHHHHHHH
T ss_pred             HHHhcCCCCCCHHHHHHHHH
Confidence            55 3553   3445555443

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.24  E-value=0.0022  Score=60.16  Aligned_cols=28  Identities=14%  Similarity=0.115  Sum_probs=23.8

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..|+|+||+|||||||++.|....+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            3456999999999999999999987653

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.23  E-value=0.0016  Score=59.62  Aligned_cols=27  Identities=19%  Similarity=0.380  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|||||||++.|+...+
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~   50 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYIN   50 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence            456899999999999999999987653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.23  E-value=0.0038  Score=50.96  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999865

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.23  E-value=0.0025  Score=57.97  Aligned_cols=27  Identities=19%  Similarity=0.452  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            567999999999999999998876553

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.23  E-value=0.0032  Score=61.11  Aligned_cols=44  Identities=14%  Similarity=0.194  Sum_probs=34.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE  136 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E  136 (330)
                      ++..++|+|++|||||||.+.|..... .-....|.||+.|..|.
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~-a~~~~~p~tTi~p~~G~   62 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVL-GNPANYPYATIDPEEAK   62 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTT-TSTTCCSSCCCCTTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCc-ccccCCCceeecceeee
Confidence            456899999999999999999987532 13455788899988774

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.22  E-value=0.0026  Score=57.29  Aligned_cols=27  Identities=19%  Similarity=0.436  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            567999999999999999998886654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.0072  Score=59.48  Aligned_cols=26  Identities=19%  Similarity=0.429  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+|=|+|.||+|+|||.|++.|+.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~  239 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATI  239 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            45789999999999999999999764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.21  E-value=0.0024  Score=57.15  Aligned_cols=26  Identities=8%  Similarity=0.244  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..|.|+||+|||||||++.|....
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34689999999999999999998764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.21  E-value=0.0034  Score=53.36  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+|+|++|||||||+++|....
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.21  E-value=0.0026  Score=58.46  Aligned_cols=27  Identities=26%  Similarity=0.476  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|....+
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            567999999999999999998876653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.20  E-value=0.0026  Score=58.01  Aligned_cols=27  Identities=26%  Similarity=0.418  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            567999999999999999999886554

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.20  E-value=0.0028  Score=59.47  Aligned_cols=28  Identities=25%  Similarity=0.438  Sum_probs=24.6

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -..+..++|+||+|+|||||++.|+..+
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            3456899999999999999999998775

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.20  E-value=0.0038  Score=52.47  Aligned_cols=23  Identities=17%  Similarity=0.508  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+|+|++|||||||+++|....
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            68999999999999999998653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.20  E-value=0.0023  Score=58.20  Aligned_cols=24  Identities=38%  Similarity=0.484  Sum_probs=21.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +.|+|+|++|||||||.++|....
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999998653

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=96.19  E-value=0.0022  Score=44.40  Aligned_cols=30  Identities=33%  Similarity=0.890  Sum_probs=24.8

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +++|++++|++||+++..  ++..|++|+...
T Consensus        25 ~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~yv   54 (57)
T 1cka_A           25 ILRIRDKPEEQWWNAEDS--EGKRGMIPVPYV   54 (57)
T ss_dssp             EEEEEECSSSSEEEEECT--TSCEEEEEGGGE
T ss_pred             EEEEEEecCCCcEEEEeC--CCCEEEEeHHHE
Confidence            478999999999999854  378999998653

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.19  E-value=0.0027  Score=58.20  Aligned_cols=27  Identities=19%  Similarity=0.279  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence            567999999999999999998876543

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=96.18  E-value=0.0018  Score=46.70  Aligned_cols=32  Identities=19%  Similarity=0.471  Sum_probs=25.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCC--CceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAG--SAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~--~~GlIPS~~~   32 (330)
                      |+.|+++.|++||+++..+..+  ..|++|+...
T Consensus        31 ~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv   64 (68)
T 1tg0_A           31 EIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV   64 (68)
T ss_dssp             EEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGE
T ss_pred             EEEEEEecCCCeEEEEECCCCCCCEEEEEchHHE
Confidence            5789999999999999864322  7899998653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.18  E-value=0.0027  Score=60.70  Aligned_cols=27  Identities=15%  Similarity=0.271  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||||||||||.+.|+...+
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            567999999999999999998886654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.18  E-value=0.0025  Score=55.52  Aligned_cols=25  Identities=20%  Similarity=0.392  Sum_probs=22.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .+..++|+||+|+|||||++.|+..
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4579999999999999999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.16  E-value=0.0037  Score=51.71  Aligned_cols=23  Identities=30%  Similarity=0.622  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+|+|++|||||||.++|....
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            68999999999999999998653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.15  E-value=0.0025  Score=56.58  Aligned_cols=27  Identities=19%  Similarity=0.422  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467899999999999999998876543

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.15  E-value=0.0024  Score=59.28  Aligned_cols=27  Identities=15%  Similarity=0.252  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..|+|+||||||||||++.|...++
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            345899999999999999999987764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.15  E-value=0.0033  Score=58.07  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=22.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR  133 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr  133 (330)
                      ..++|+|.+|||||||.|.|..... .-....|.|||.+.
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~~-~~~~~~~g~T~~~~  159 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQ  159 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCC-C------------C
T ss_pred             ceEEEEecCCCchHHHHHHHhcCce-eecCCCCCeeeeeE
Confidence            3689999999999999999987542 23556788888764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.15  E-value=0.046  Score=51.08  Aligned_cols=27  Identities=19%  Similarity=0.374  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +++.|+|+||+|+||||++..|+..+.
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~  129 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFV  129 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence            456899999999999999999987653

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=96.14  E-value=0.0026  Score=63.25  Aligned_cols=56  Identities=18%  Similarity=0.268  Sum_probs=28.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccchh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEMM  151 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f~  151 (330)
                      .|+|+|++|||||||.++|..... .+....+.|||.....  +.+|..+.+++..-+.
T Consensus       235 kV~ivG~~nvGKSSLln~L~~~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~  292 (476)
T 3gee_A          235 STVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLR  292 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC-----
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCC
Confidence            599999999999999999987632 3566688899987554  4578888888765543

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.13  E-value=0.0013  Score=66.97  Aligned_cols=28  Identities=25%  Similarity=0.454  Sum_probs=24.2

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..++|+||+|+|||||.+.|...++
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            3568999999999999999998887654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.13  E-value=0.0029  Score=55.24  Aligned_cols=23  Identities=26%  Similarity=0.528  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~  115 (330)
                      +..|+|+|++||||||+++.|.+
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999976

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.13  E-value=0.0045  Score=51.09  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=21.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .-|+|+|++|||||||+++|....
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998653

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.13  E-value=0.0016  Score=48.06  Aligned_cols=32  Identities=19%  Similarity=0.514  Sum_probs=26.4

Q ss_pred             CcEEEeCCCCCceeEEeCCC-CCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNV-AGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~-~~~~GlIPS~~~   32 (330)
                      ||+|++++|++||+++..+. ++..|++|+..+
T Consensus        33 ~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv   65 (75)
T 2egc_A           33 SMEVLERNPNGWWYCQILDGVKPFKGWVPSNYL   65 (75)
T ss_dssp             EEEECEECTTSEEEEEECCSSSCEEEEEEGGGE
T ss_pred             EEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHC
Confidence            57899999999999998543 368999998765

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.12  E-value=0.0031  Score=57.31  Aligned_cols=27  Identities=19%  Similarity=0.372  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            567999999999999999999887654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.12  E-value=0.0033  Score=56.94  Aligned_cols=25  Identities=24%  Similarity=0.508  Sum_probs=22.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .+..++|+||+|+|||||.+.|...
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5679999999999999999988764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.11  E-value=0.0032  Score=52.41  Aligned_cols=27  Identities=33%  Similarity=0.511  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+.++|+||+|+|||+|++.+.+...
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999987753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.11  E-value=0.0045  Score=50.72  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999865

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=96.10  E-value=0.0023  Score=44.37  Aligned_cols=29  Identities=34%  Similarity=0.842  Sum_probs=24.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +++|+++.|++||+++.   ++..|++|+...
T Consensus        26 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   54 (58)
T 1sem_A           26 VITLINKDDPNWWEGQL---NNRRGIFPSNYV   54 (58)
T ss_dssp             EEEEEECSSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEecCCCEEEEEE---CCcEEEechHHe
Confidence            47899999999999997   368999998653

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.10  E-value=0.0084  Score=58.42  Aligned_cols=26  Identities=19%  Similarity=0.451  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .++=|+|.||+|+|||.|++.|+.+.
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e~  206 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHHT  206 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence            34679999999999999999998764

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=96.10  E-value=0.0032  Score=43.77  Aligned_cols=30  Identities=33%  Similarity=0.586  Sum_probs=25.2

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChh
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPE   31 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~   31 (330)
                      +++|+++.|++||.++.. .++..|++|+..
T Consensus        24 ~i~v~~~~~~~Ww~g~~~-~~g~~G~~P~~y   53 (58)
T 1jo8_A           24 KIINIEFVDDDWWLGELE-KDGSKGLFPSNY   53 (58)
T ss_dssp             EEEEEECCSSSEEEEEET-TTCCEEEEEGGG
T ss_pred             EEEEEEecCCCcEEEEEC-CCCCEEEechHH
Confidence            478999999999999875 347899999865

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=96.10  E-value=0.0011  Score=46.23  Aligned_cols=29  Identities=38%  Similarity=0.833  Sum_probs=24.7

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|+|+.+.|++||.++.   ++..|++|+...
T Consensus        27 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   55 (58)
T 1zlm_A           27 IIYITDMSDTNWWKGTS---KGRTGLIPSNYV   55 (58)
T ss_dssp             EEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEeCCCCEEEEEE---CCCEEEEehHHE
Confidence            57899999999999986   568999998754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.10  E-value=0.15  Score=43.67  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.09  E-value=0.0032  Score=53.21  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      --|+|+|++|||||||.++|...
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHHcC
Confidence            36899999999999999999864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.09  E-value=0.0032  Score=57.42  Aligned_cols=28  Identities=14%  Similarity=0.273  Sum_probs=23.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..++|+||+|+|||||.+.|....+
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3567999999999999999998876653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.09  E-value=0.0028  Score=59.08  Aligned_cols=28  Identities=14%  Similarity=0.172  Sum_probs=23.7

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..|+|+||+|||||||++.|....+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3456899999999999999999987643

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.09  E-value=0.005  Score=50.20  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+|+|++|||||||.++|....
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            38899999999999999998653

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=96.08  E-value=0.0009  Score=53.36  Aligned_cols=32  Identities=22%  Similarity=0.436  Sum_probs=26.3

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |+.|++++|++||+++..+..+..|+|||...
T Consensus        29 ~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV   60 (108)
T 2rqv_A           29 NLFICAHHNCEWFIAKPIGRLGGPGLVPVGFV   60 (108)
T ss_dssp             EECCCCEETTTEEEECCSSSSCCCEEEESTTC
T ss_pred             EEEEeEecCCCEEEEEECCccCCeeEeecceE
Confidence            46788888999999988666677899999765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.08  E-value=0.0032  Score=58.16  Aligned_cols=27  Identities=30%  Similarity=0.466  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            467999999999999999998876654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.08  E-value=0.004  Score=50.91  Aligned_cols=22  Identities=23%  Similarity=0.610  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.08  E-value=0.0028  Score=56.11  Aligned_cols=27  Identities=19%  Similarity=0.304  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .++.|+|+||||+|||+|+..|++...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            357899999999999999999998643

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.08  E-value=0.0053  Score=55.69  Aligned_cols=54  Identities=20%  Similarity=0.292  Sum_probs=33.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEeccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHD  148 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~  148 (330)
                      ..|+|+|++|+|||||.++|+.... .+....+.||+.+...  +.+|..+.++|..
T Consensus        40 ~~I~vvG~~g~GKSSLin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTp   95 (270)
T 1h65_A           40 LTILVMGKGGVGKSSTVNSIIGERV-VSISPFQSEGPRPVMVSRSRAGFTLNIIDTP   95 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSSCCCSSCEEEEEEETTEEEEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCcceeeEEEEEeeCCeEEEEEECC
Confidence            3689999999999999999986542 1223344455543222  2344555555543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.07  E-value=0.0031  Score=52.14  Aligned_cols=23  Identities=22%  Similarity=0.507  Sum_probs=20.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .-|+|+|++|||||||+++|...
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.06  E-value=0.0027  Score=53.63  Aligned_cols=22  Identities=23%  Similarity=0.599  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.06  E-value=0.004  Score=54.16  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..++++|.||+|+|||+|++.|....
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~   76 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARA   76 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999998764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.06  E-value=0.0034  Score=57.06  Aligned_cols=27  Identities=26%  Similarity=0.503  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999998887654

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=96.05  E-value=0.0026  Score=44.12  Aligned_cols=29  Identities=24%  Similarity=0.784  Sum_probs=24.7

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +++|+++.|++||.++.   ++..|++|+...
T Consensus        26 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   54 (58)
T 2vwf_A           26 FIHVMDNSDPNWWKGAC---HGQTGMFPRNYV   54 (58)
T ss_dssp             EEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEcCCCCEEEEEE---CCcEEEEchHHe
Confidence            47899999999999987   568999998653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.05  E-value=0.005  Score=51.07  Aligned_cols=22  Identities=32%  Similarity=0.602  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999865

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.05  E-value=0.0039  Score=58.34  Aligned_cols=27  Identities=22%  Similarity=0.476  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..|+|+||+||||||+++.|...++
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~  127 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ  127 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            457999999999999999999987654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.05  E-value=0.0042  Score=51.36  Aligned_cols=23  Identities=30%  Similarity=0.618  Sum_probs=21.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .-|+|+|++|||||||.++|...
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999999875

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.05  E-value=0.0027  Score=52.93  Aligned_cols=26  Identities=15%  Similarity=0.434  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..++|+||+|+|||+|++.|....
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999998764

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=96.04  E-value=0.0037  Score=46.25  Aligned_cols=31  Identities=23%  Similarity=0.804  Sum_probs=25.2

Q ss_pred             CcEEEeCC-CCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKD-DHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~-D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||+|++++ |.+||+++.. .++..|++||...
T Consensus        42 ~i~v~~~~~~~gWw~g~~~-~~g~~G~fP~nyV   73 (78)
T 1k1z_A           42 IVELTKAEAEHNWWEGRNT-ATNEVGWFPCNRV   73 (78)
T ss_dssp             EEEEEECCSSCSCEEEEET-TTTEEEEECSTTE
T ss_pred             EEEEEEcCCCCCeEEEEEC-CCCCEEEEehHHe
Confidence            57899995 9999999864 3567999999653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.04  E-value=0.0051  Score=49.91  Aligned_cols=22  Identities=27%  Similarity=0.620  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.04  E-value=0.0037  Score=57.24  Aligned_cols=25  Identities=20%  Similarity=0.498  Sum_probs=22.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .+..++|+||+|+|||||.+.|...
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5679999999999999999988764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.04  E-value=0.0035  Score=57.32  Aligned_cols=27  Identities=15%  Similarity=0.351  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            567999999999999999998876543

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=96.03  E-value=0.0027  Score=44.11  Aligned_cols=29  Identities=21%  Similarity=0.700  Sum_probs=24.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ++.|+++.|++||.++.   ++..|++|+...
T Consensus        25 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   53 (58)
T 1uti_A           25 VVEVLDSSNPSWWTGRL---HNKLGLFPANYV   53 (58)
T ss_dssp             EEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEECCCCEEEEEE---CCeEEEeeHHHe
Confidence            47899999999999986   468999998653

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=96.02  E-value=0.0028  Score=44.06  Aligned_cols=29  Identities=31%  Similarity=0.762  Sum_probs=24.6

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +++|+.++|++||.++.   ++..|++|+...
T Consensus        25 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   53 (58)
T 2bz8_A           25 IITNIRKEDGGWWEGQI---NGRRGLFPDNFV   53 (58)
T ss_dssp             EEEEEECCTTTEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEeCCCCEEEEEE---CCeEEEEehHHe
Confidence            47899999999999986   468999998653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.01  E-value=0.0064  Score=51.73  Aligned_cols=24  Identities=25%  Similarity=0.420  Sum_probs=21.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..|+|+|++|||||||.++|....
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~~   47 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKNDR   47 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999998653

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=96.00  E-value=0.0031  Score=45.25  Aligned_cols=30  Identities=43%  Similarity=0.897  Sum_probs=25.0

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|+++.|++||+++..  ++..|++|+...
T Consensus        26 ~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~yv   55 (67)
T 1gl5_A           26 EYIILEKNDLHWWRARDK--YGSEGYIPSNYV   55 (67)
T ss_dssp             EEEEEECSSSSEEEEECS--SSCEEEEETTSE
T ss_pred             EEEEEEccCCCcEEEEEC--CCCEEEEEhHhE
Confidence            578999999999999854  467999999764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.99  E-value=0.013  Score=54.54  Aligned_cols=25  Identities=16%  Similarity=0.413  Sum_probs=22.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+.|+|.||+|+|||+|++.+....
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH
Confidence            3679999999999999999998763

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.99  E-value=0.0037  Score=56.38  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=22.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..++|+||+|+|||||.+.|....+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            6899999999999999999887654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=95.98  E-value=0.0025  Score=63.13  Aligned_cols=55  Identities=16%  Similarity=0.223  Sum_probs=39.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM  150 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f  150 (330)
                      .|+|+|++|||||||.++|..... .+....+.|||.....  ..+|..+.+++..-+
T Consensus       226 kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~  282 (462)
T 3geh_A          226 KVAIVGRPNVGKSSLLNAWSQSDR-AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGI  282 (462)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHB-SCCSCCTTCCHHHHHHEEEETTEEEEECC----
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCeeEEEEEEEEEECCEEEEEEECCcc
Confidence            599999999999999999987632 2455667788865433  457888888876655

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=95.98  E-value=0.003  Score=43.78  Aligned_cols=29  Identities=24%  Similarity=0.656  Sum_probs=24.7

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +++|+.++|++||.++.   ++..|++|+...
T Consensus        27 ~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv   55 (58)
T 2drm_A           27 TIIVHQKDPAGWWEGEL---NGKRGWVPANYV   55 (58)
T ss_dssp             EEEEEECCTTSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEecCCCEEEEEE---CCcEEEEeHHHE
Confidence            47899999999999987   468999998653

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.97  E-value=0.0029  Score=60.20  Aligned_cols=26  Identities=19%  Similarity=0.303  Sum_probs=22.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ....|+|+|++|||||||+++|...+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998653

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=95.97  E-value=0.0058  Score=62.37  Aligned_cols=54  Identities=15%  Similarity=0.274  Sum_probs=37.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc---------cCCeeEEEecccch
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE---------ENGRAYYFISHDEM  150 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E---------~~G~dy~fvs~~~f  150 (330)
                      ..|+|+|++|||||||+|+|..... .|  .+++|||....|-         ..|..+.++|..-+
T Consensus        39 ~~VaivG~pnvGKStLiN~L~g~~~-~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi  101 (592)
T 1f5n_A           39 VVVAIVGLYRTGKSYLMNKLAGKKK-GF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL  101 (592)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSS-CS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred             cEEEEECCCCCCHHHHHHhHcCCCC-cc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCc
Confidence            4688999999999999999987642 23  6777877654442         13455666665544

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.97  E-value=0.0055  Score=49.93  Aligned_cols=22  Identities=32%  Similarity=0.656  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.96  E-value=0.0095  Score=58.55  Aligned_cols=26  Identities=15%  Similarity=0.307  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+|=|+|.||+|+|||.|++.|+.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~  239 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQT  239 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHh
Confidence            35789999999999999999999864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.95  E-value=0.0056  Score=51.10  Aligned_cols=22  Identities=23%  Similarity=0.613  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999865

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.95  E-value=0.0031  Score=55.96  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=22.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .+..|+|.||+|||||||++.|...
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            4578999999999999999988775

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.95  E-value=0.0042  Score=54.03  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=22.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..++|+||+|+|||||++.|+...+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            4689999999999999999987764

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=95.94  E-value=0.0026  Score=51.41  Aligned_cols=32  Identities=28%  Similarity=0.516  Sum_probs=27.6

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|++++|++||+++..+..+..|++|+...
T Consensus        27 ~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv   58 (120)
T 2kym_A           27 NLSICAHYDYEWFIAKPINRLGGPGLVPVSYV   58 (120)
T ss_dssp             EEEEEEEETTTEEEEEESSSCSCCCCEEGGGE
T ss_pred             EEEEEEecCCCEEEEEECCCCCCEEEEchHHE
Confidence            57899999999999998666788999999764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.94  E-value=0.0035  Score=57.37  Aligned_cols=52  Identities=13%  Similarity=0.130  Sum_probs=33.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISH  147 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~  147 (330)
                      ..|+|+|.+|||||||.++|....  ......|.||..+..+  +.+|..+.+++.
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDt   57 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDL   57 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC--EEEEECTTSSSEEEEEEEECSSCEEEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeeEEEEEEEEEeCCCceEEEEC
Confidence            368999999999999999998754  2334455556544333  223444555543

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.93  E-value=0.0092  Score=56.65  Aligned_cols=25  Identities=16%  Similarity=0.413  Sum_probs=22.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+.|+|.||+|+|||+|++.|+...
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHh
Confidence            3579999999999999999998764

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=95.93  E-value=0.0038  Score=43.21  Aligned_cols=31  Identities=13%  Similarity=0.329  Sum_probs=25.6

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |+.|+.++|++||.++.. .++..|++|+...
T Consensus        25 ~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~yv   55 (58)
T 1zuy_A           25 VIYITREEPSGWSLGKLL-DGSKEGWVPTAYM   55 (58)
T ss_dssp             EEEEEEECTTSEEEEEES-SCSCEEEEEGGGE
T ss_pred             EEEEEEecCCCeEEEEEC-CCCCEEEecHHHE
Confidence            478999999999999876 3478999998653

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=95.92  E-value=0.0032  Score=45.44  Aligned_cols=31  Identities=23%  Similarity=0.772  Sum_probs=25.0

Q ss_pred             CcEEEeC-CCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISK-DDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~-~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |++|+++ .|.+||.++.. .++..|++||...
T Consensus        34 ~i~v~~~~~~~~Ww~g~~~-~~g~~G~fP~~yv   65 (70)
T 1gcq_C           34 IVELTKAEAEHNWWEGRNT-ATNEVGWFPCNRV   65 (70)
T ss_dssp             EEEEEECCTTCSEEEEEET-TTTEEEEEEGGGE
T ss_pred             EEEEEeCCCCCCCeEEEeC-CCCCEeEeehHHe
Confidence            5789999 68999999864 3578999998653

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.91  E-value=0.0062  Score=51.45  Aligned_cols=23  Identities=26%  Similarity=0.572  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      --|+|+|++|||||||+++|...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            36899999999999999999875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.91  E-value=0.0044  Score=58.54  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=21.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..|.|+||+|||||||++.|.....
T Consensus        93 ~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           93 YIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4799999999999999999977653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.90  E-value=0.0065  Score=51.22  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .-|+|+|++|||||||+++|...
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999865

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.90  E-value=0.0056  Score=51.82  Aligned_cols=23  Identities=22%  Similarity=0.492  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+|+|++|||||||.++|....
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998653

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.90  E-value=0.0065  Score=50.09  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999854

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.90  E-value=0.0032  Score=55.59  Aligned_cols=25  Identities=16%  Similarity=0.231  Sum_probs=22.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .+..++|+||+|+|||||++.|...
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3578999999999999999998865

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=95.89  E-value=0.0065  Score=58.36  Aligned_cols=41  Identities=22%  Similarity=0.203  Sum_probs=29.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD  135 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~  135 (330)
                      ...|+|+|.+|||||||.++|.....  .....|.||+.|..|
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~--~v~~~p~tTi~p~~g   42 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGI--EAANYPFCTIEPNTG   42 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCceECceEE
Confidence            35699999999999999999997542  344567889888765

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=95.89  E-value=0.003  Score=44.03  Aligned_cols=29  Identities=21%  Similarity=0.706  Sum_probs=24.3

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +++|++++|++||.++.   ++..|++|+...
T Consensus        28 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   56 (59)
T 2g6f_X           28 VIHVTRVEEGGWWEGTH---NGRTGWFPSNYV   56 (59)
T ss_dssp             EEEEEEECTTSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEecCCCEEEEEE---CCcEEEEeHHHE
Confidence            47899999999999986   467899998653

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=95.89  E-value=0.0038  Score=44.99  Aligned_cols=31  Identities=16%  Similarity=0.374  Sum_probs=25.8

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|.|++++|++||+++... ++..|++|+...
T Consensus        27 ~i~v~~~~~~~W~~g~~~~-~g~~G~~P~~yv   57 (69)
T 1ruw_A           27 IVFISRDEPSGWSLAKLLD-GSKEGWVPTAYM   57 (69)
T ss_dssp             EEEEEEECTTSEEEEEETT-SSCEEEEEGGGE
T ss_pred             EEEEEEecCCCeEEEEECC-CCCEEEEehHHe
Confidence            4789999999999998753 478999998764

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=95.89  E-value=0.003  Score=43.90  Aligned_cols=29  Identities=21%  Similarity=0.552  Sum_probs=24.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ++.|+++.|++||.++.   ++..|++|+...
T Consensus        26 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   54 (58)
T 1zx6_A           26 KVQLLEKLSPEWYKGSC---NGRTGIFPANYV   54 (58)
T ss_dssp             EEEEEEECSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEecCCCEEEEEE---CCcEEEeeHHHE
Confidence            47899999999999996   568999998653

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=95.88  E-value=0.0031  Score=44.16  Aligned_cols=29  Identities=34%  Similarity=0.846  Sum_probs=24.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +++|++++|++||.++.   ++..|++|+...
T Consensus        29 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   57 (60)
T 2xmf_A           29 IIDIIKEDPSGWWTGRL---RGKQGLFPNNYV   57 (60)
T ss_dssp             EEEEEEECTTSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEecCCCEEEEEE---CCEEEEEcHHHE
Confidence            47899999999999997   468999998653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.87  E-value=0.0054  Score=56.04  Aligned_cols=39  Identities=21%  Similarity=0.296  Sum_probs=24.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR  133 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr  133 (330)
                      ..++|+|.+|||||||+++|...... -...+|+||+...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~  138 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQ  138 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceE
Confidence            47999999999999999999976532 2456778887653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.87  E-value=0.0073  Score=54.56  Aligned_cols=53  Identities=25%  Similarity=0.297  Sum_probs=32.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISH  147 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~  147 (330)
                      ..|+|+|.+|+|||||.++|..... .+....+.||......  +.+|..+.++|.
T Consensus        37 ~~I~lvG~~g~GKSSLin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~liDT   91 (262)
T 3def_A           37 MTVLVLGKGGVGKSSTVNSLIGEQV-VRVSPFQAEGLRPVMVSRTMGGFTINIIDT   91 (262)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSCC-SCCCSSCC-CCCCEEEEEEETTEEEEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCcceeeEEEEEEECCeeEEEEEC
Confidence            4689999999999999999997542 1333344444433222  234444455543

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=95.86  E-value=0.0043  Score=45.07  Aligned_cols=31  Identities=39%  Similarity=0.860  Sum_probs=25.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|+|+.+.|++||+++.. .++..|++|+...
T Consensus        39 ~i~v~~~~~~~Ww~g~~~-~~g~~G~~P~~yv   69 (73)
T 3h0h_A           39 KFQILNSSEGDWWEARSL-TTGETGYIPSNYV   69 (73)
T ss_dssp             EEEEEECSSSSEEEEEET-TTCCEEEEEGGGE
T ss_pred             EEEEEEecCCCeEEEEEC-CCCCEEEEEHHHe
Confidence            478999999999999975 3467999998653

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=95.86  E-value=0.0045  Score=57.51  Aligned_cols=28  Identities=14%  Similarity=0.382  Sum_probs=23.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..++|+||+|+|||||.+.|....+
T Consensus        62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           62 ERGQLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3568999999999999999998876543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.86  E-value=0.0076  Score=49.35  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .-|+|+|++|||||||.++|...
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.85  E-value=0.0064  Score=51.78  Aligned_cols=22  Identities=14%  Similarity=0.404  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.85  E-value=0.0066  Score=51.90  Aligned_cols=22  Identities=27%  Similarity=0.561  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999865

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=95.85  E-value=0.0036  Score=44.33  Aligned_cols=29  Identities=21%  Similarity=0.706  Sum_probs=24.6

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||+|+.+.|++||.++.   ++..|++|+...
T Consensus        30 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   58 (64)
T 2ak5_A           30 VIHVTRVEEGGWWEGTH---NGRTGWFPSNYV   58 (64)
T ss_dssp             EEEEEECCTTSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEeEecCCCEEEEEE---CCCEEEEehHHe
Confidence            57899999999999986   467999998654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.84  E-value=0.0052  Score=58.86  Aligned_cols=27  Identities=22%  Similarity=0.308  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||||||||||.+.|+...+
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            467999999999999999999886654

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.012  Score=58.34  Aligned_cols=26  Identities=23%  Similarity=0.431  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+|=|+|.||+|+|||.|++.|+.+.
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e~  267 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANRT  267 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhcc
Confidence            45789999999999999999999764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.83  E-value=0.0058  Score=52.45  Aligned_cols=24  Identities=33%  Similarity=0.578  Sum_probs=21.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++++|.||+|+|||+|++.|....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            799999999999999999998764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.82  E-value=0.0053  Score=58.87  Aligned_cols=27  Identities=22%  Similarity=0.374  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||||||||||.+.|+...+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence            567999999999999999999887653

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=95.82  E-value=0.0046  Score=44.70  Aligned_cols=29  Identities=24%  Similarity=0.712  Sum_probs=23.2

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|++++ ++||+++..  ++..|+|||...
T Consensus        28 ~i~vl~~~-~~Ww~~~~~--~g~~G~~Psnyv   56 (67)
T 2b86_A           28 RLWLLDDS-KTWWRVRNA--ANRTGYVPSNYV   56 (67)
T ss_dssp             EEEEEECS-SSSCEEECT--TSCEEECCCCSE
T ss_pred             EEEEEecC-CCeEEEEeC--CCCEEEeChHHE
Confidence            57899985 699999854  478999999654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.80  E-value=0.0057  Score=52.21  Aligned_cols=24  Identities=25%  Similarity=0.313  Sum_probs=21.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .-|+|+|++|||||||+++|....
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            479999999999999999998653

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=95.80  E-value=0.0046  Score=53.11  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .-|+|+|++|||||||.++|...
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999753

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.80  E-value=0.0054  Score=58.87  Aligned_cols=27  Identities=22%  Similarity=0.459  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||||||||||.+.|+...+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            567999999999999999999887654

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.79  E-value=0.0058  Score=54.68  Aligned_cols=26  Identities=15%  Similarity=0.431  Sum_probs=22.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ++.++|+||+|+|||+|++.|.....
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcC
Confidence            46799999999999999999987653

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.79  E-value=0.012  Score=58.50  Aligned_cols=25  Identities=20%  Similarity=0.465  Sum_probs=22.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++.|+|+||+|+|||+|++.|....
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4679999999999999999998753

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=95.79  E-value=0.0048  Score=44.76  Aligned_cols=31  Identities=32%  Similarity=0.778  Sum_probs=24.4

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCc---eeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSA---GLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~---GlIPS~~~   32 (330)
                      ||+| +++|++||.++....++..   |++|+...
T Consensus        34 ~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv   67 (72)
T 2kgt_A           34 VFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYL   67 (72)
T ss_dssp             CEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTS
T ss_pred             EEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHE
Confidence            5788 8889999999985333567   99999654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.78  E-value=0.043  Score=48.58  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=27.3

Q ss_pred             hhhhccceeeEEEEcCCHHHHHHHHHHHHHH
Q psy933          286 LKSAYEHFFDLTVVNNDIEETIGILEKAIEE  316 (330)
Q Consensus       286 ~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~  316 (330)
                      .|..|++.||.+|+|||+++|+.+|+++|..
T Consensus       167 ~e~~~~~~~d~~i~Nd~l~~a~~~l~~ii~~  197 (219)
T 1s96_A          167 AEMSHYAEYDYLIVNDDFDTALTDLKTIIRA  197 (219)
T ss_dssp             HHHTTGGGSSEEEECSSHHHHHHHHHHHHHH
T ss_pred             HHHhhccCCCEEEECcCHHHHHHHHHHHHHH
Confidence            4556889999999999999999999999853

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.77  E-value=0.0056  Score=58.97  Aligned_cols=27  Identities=26%  Similarity=0.358  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||||||||||.+.|+...+
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            567999999999999999998887654

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=95.77  E-value=0.004  Score=44.58  Aligned_cols=31  Identities=19%  Similarity=0.549  Sum_probs=25.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ++.|+++.|++||.++..+ .+..|++|+...
T Consensus        30 ~i~v~~~~~~~Ww~g~~~~-~g~~G~~P~~yv   60 (67)
T 2o9s_A           30 RITLLRQVDENWYEGRIPG-TSRQGIFPITYV   60 (67)
T ss_dssp             EEEEEEECSSSEEEEECTT-SSCEEEEEGGGE
T ss_pred             EEEEEEecCCCEEEEEECC-CCCEEEEChHHe
Confidence            4789999999999998654 468999998653

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.76  E-value=0.0047  Score=58.73  Aligned_cols=26  Identities=31%  Similarity=0.515  Sum_probs=23.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +..++|+||+|+|||||++.|...++
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            67899999999999999999998765

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.76  E-value=0.021  Score=54.05  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..+.|+|.||+|+|||+|++.|+...
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc
Confidence            35789999999999999999998764

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.75  E-value=0.0042  Score=44.65  Aligned_cols=29  Identities=38%  Similarity=0.833  Sum_probs=24.6

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||+|+++.|++||.++.   ++..|++|+...
T Consensus        31 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   59 (68)
T 1x2k_A           31 IIYITDMSDTNWWKGTS---KGRTGLIPSNYV   59 (68)
T ss_dssp             EEEEEECSCSSEEEEES---SSCEEEEETTTE
T ss_pred             EEEEEEcCCCCEEEEEE---CCcEEEEehHHe
Confidence            57899999999999985   568999998664

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=95.74  E-value=0.0051  Score=45.62  Aligned_cols=32  Identities=22%  Similarity=0.627  Sum_probs=26.3

Q ss_pred             CcEEEeCCCCCceeEEeCC--CCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDN--VAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~--~~~~~GlIPS~~~   32 (330)
                      ||+|+.++|++||.++..+  ..+..|++|+...
T Consensus        31 ~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv   64 (80)
T 1ue9_A           31 LILILKKNTSGWWQGELQARGKKRQKGWFPASHV   64 (80)
T ss_dssp             EEEEEEECSSSEEEEEECSCCSSCCEEEEETTSE
T ss_pred             EEEEEEecCCCcEEEEECCCCCCCcEEEEchHHe
Confidence            5789999999999999863  3368999999664

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=95.74  E-value=0.0052  Score=43.27  Aligned_cols=29  Identities=21%  Similarity=0.582  Sum_probs=24.3

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |++|+++.|++||.++.   ++..|++|+...
T Consensus        29 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   57 (62)
T 1k4u_S           29 IILVLSKVNEEWLEGES---KGKVGIFPKVFV   57 (62)
T ss_dssp             EEEEEEESSSSCEEEEC---SSCEEEECGGGC
T ss_pred             EEEEEEeCCCCEEEEEE---CCcEEEEeHHHE
Confidence            57899999999999984   468999998654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.74  E-value=0.0077  Score=51.26  Aligned_cols=24  Identities=33%  Similarity=0.649  Sum_probs=21.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .-|+|+|++|||||||+++|....
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            368999999999999999998753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.74  E-value=0.004  Score=52.50  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .-|+|+|++|||||||.++|...
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999999864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.73  E-value=0.0064  Score=52.68  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=22.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .+..++|+||+|+|||||++.|+..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            4579999999999999999998854

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.73  E-value=0.004  Score=56.54  Aligned_cols=37  Identities=24%  Similarity=0.313  Sum_probs=26.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSP  132 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~p  132 (330)
                      ..|+|+|++|||||||.++|.....  .....|.+|...
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~~~--~~~~~pg~tv~~   42 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGTKQ--YVANWPGVTVEK   42 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTTCE--EEEECTTSCCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCceEEE
Confidence            3689999999999999999986431  223344445433

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.73  E-value=0.0081  Score=50.60  Aligned_cols=23  Identities=13%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .-|+|+|++|||||||+++|...
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999864

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.72  E-value=0.0039  Score=45.90  Aligned_cols=29  Identities=24%  Similarity=0.537  Sum_probs=24.0

Q ss_pred             CcEEEe-CCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIIS-KDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~-~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||+|++ .+|++||+++.   +++.|++||...
T Consensus        38 ~i~v~~~~~~~gWw~g~~---~g~~G~fP~~yv   67 (75)
T 2ege_A           38 VVMVYGPMDDQGFYYGEL---GGHRGLVPAHLL   67 (75)
T ss_dssp             EEEEESCCCTTCEEEEES---SSCEEEEETTTE
T ss_pred             EEEEeEccCCCCEEEEEE---CCcEEEEChHHe
Confidence            578997 58999999985   568999999764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.72  E-value=0.0062  Score=54.17  Aligned_cols=27  Identities=22%  Similarity=0.393  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .++.|+|.||+|+|||+|++.|.....
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            347899999999999999999988653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.72  E-value=0.0066  Score=51.74  Aligned_cols=27  Identities=19%  Similarity=0.517  Sum_probs=22.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +..-|+|+|++|||||+|+++|...+.
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhcCC
Confidence            345799999999999999998876543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.71  E-value=0.0075  Score=48.94  Aligned_cols=22  Identities=18%  Similarity=0.572  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999865

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.71  E-value=0.017  Score=56.74  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .++=|+|.||+|+|||.|++.|+.+.
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e~  240 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQT  240 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred             CCCCCceECCCCchHHHHHHHHHHHh
Confidence            35789999999999999999999874

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.71  E-value=0.0051  Score=58.75  Aligned_cols=27  Identities=19%  Similarity=0.332  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||||||||||.+.|+...+
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCCC
Confidence            567999999999999999998886643

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.70  E-value=0.0077  Score=52.96  Aligned_cols=22  Identities=32%  Similarity=0.665  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999853

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.70  E-value=0.0061  Score=57.82  Aligned_cols=39  Identities=28%  Similarity=0.364  Sum_probs=29.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR  133 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr  133 (330)
                      ...|+|+|++|||||||.++|....+  .....++||+.+.
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~~--~~~~~~~~t~~~~  205 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAKP--EIASYPFTTRGIN  205 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSCC--EEECCTTCSSCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCeeecee
Confidence            45899999999999999999987543  2334567776543

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=95.69  E-value=0.0048  Score=43.91  Aligned_cols=31  Identities=19%  Similarity=0.315  Sum_probs=25.1

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|+.+.|++||.++.. .++..|++||...
T Consensus        30 ~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~yv   60 (65)
T 2j05_A           30 MFIVHNELEDGWMWVTNL-RTDEQGLIVEDLV   60 (65)
T ss_dssp             EEEEEEECTTSEEEEEET-TTCCEEEEEGGGE
T ss_pred             EEEEeEecCCCEEEEEEC-CCCCEEEEEhHHe
Confidence            578999999999999854 3478999998653

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=95.69  E-value=0.0047  Score=46.57  Aligned_cols=32  Identities=9%  Similarity=0.386  Sum_probs=25.7

Q ss_pred             CcEEEeCCCCCceeEEeCCC---CCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNV---AGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~---~~~~GlIPS~~~   32 (330)
                      |+.|+++.|++||+++..+.   ++..|++|+...
T Consensus        43 iI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV   77 (83)
T 2ke9_A           43 VITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIV   77 (83)
T ss_dssp             EEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGE
T ss_pred             EEEEEEecCCCeEEEEECCCCCCCCCEEEechHHE
Confidence            57899999999999997532   478999998653

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.69  E-value=0.0053  Score=57.34  Aligned_cols=27  Identities=19%  Similarity=0.445  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+||||||+++.|+..++
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~  125 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLK  125 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            457999999999999999999987653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.68  E-value=0.0065  Score=50.89  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=21.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .-|+|+|++|||||||.++|....
T Consensus        19 ~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           19 LRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999998654

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.67  E-value=0.0051  Score=58.11  Aligned_cols=27  Identities=19%  Similarity=0.470  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|+...+
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            457899999999999999999988765

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.67  E-value=0.0084  Score=51.83  Aligned_cols=23  Identities=26%  Similarity=0.512  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .-|+|+|++|||||||+++|...
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            36899999999999999999864

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.67  E-value=0.014  Score=57.44  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=22.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +..|+|+|.+|+|||||+++|.+..
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l   63 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYL   63 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999998764

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.67  E-value=0.017  Score=56.50  Aligned_cols=25  Identities=16%  Similarity=0.456  Sum_probs=22.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+.|+|.||+|+|||+|++.|+...
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHc
Confidence            4689999999999999999999875

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.65  E-value=0.0081  Score=53.62  Aligned_cols=25  Identities=28%  Similarity=0.602  Sum_probs=22.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +-++|+||+|+|||||++.|.....
T Consensus        50 ~g~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           50 KGVLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4599999999999999999988754

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=95.64  E-value=0.0041  Score=44.99  Aligned_cols=29  Identities=21%  Similarity=0.582  Sum_probs=24.7

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |+.|+++.|++||.++.   ++..|++|+...
T Consensus        27 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   55 (68)
T 2ew3_A           27 IITLTNQIDENWYEGMI---HGESGFFPINYV   55 (68)
T ss_dssp             EEEEEEESSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEecCCCEEEEEE---CCcEEEeeHHHE
Confidence            57899999999999986   468999998664

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.64  E-value=0.0064  Score=58.95  Aligned_cols=28  Identities=18%  Similarity=0.356  Sum_probs=23.8

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..++|+||||||||||.+.|+...+
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            3568999999999999999998886543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=95.64  E-value=0.0062  Score=58.39  Aligned_cols=56  Identities=20%  Similarity=0.235  Sum_probs=34.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC----C-ccccccccccCCCCcccCCeeEEEecccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD----K-YAYPVPHTTRSPRSDEENGRAYYFISHDE  149 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~----~-f~~~v~~TTR~pr~~E~~G~dy~fvs~~~  149 (330)
                      ++.|+++|.+|+|||||.|.|......    . -....|+||+.+.....+. ...++|..-
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG  220 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-ESSLYDTPG  220 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-SCEEEECCC
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-CeEEEeCCC
Confidence            467999999999999999999987421    1 2355778888765544322 144554443

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.63  E-value=0.0079  Score=50.94  Aligned_cols=22  Identities=27%  Similarity=0.641  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            6899999999999999999865

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.63  E-value=0.006  Score=57.70  Aligned_cols=28  Identities=21%  Similarity=0.316  Sum_probs=23.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..++|+||+||||||+++.|+..++
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~  154 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLK  154 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3467999999999999999999987653

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.62  E-value=0.0073  Score=55.08  Aligned_cols=26  Identities=23%  Similarity=0.466  Sum_probs=23.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+.++|.||+|+|||+|++.|.....
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            47899999999999999999998764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.62  E-value=0.0025  Score=55.49  Aligned_cols=24  Identities=29%  Similarity=0.591  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHH-hhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLI-NKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~-~~~p  118 (330)
                      -|+|+|++|||||||+++|+ ..+.
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~~~~   41 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTGEFE   41 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCC
Confidence            68999999999999999944 4433

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.61  E-value=0.0077  Score=51.44  Aligned_cols=24  Identities=21%  Similarity=0.483  Sum_probs=21.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .-|+|+|++|||||||+++|....
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            468999999999999999998753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.60  E-value=0.0071  Score=58.16  Aligned_cols=39  Identities=21%  Similarity=0.264  Sum_probs=30.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD  135 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~  135 (330)
                      .|+|+|++|||||||.++|....+  .....|.||..|..+
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~~--~v~~~p~~Ti~pn~g   41 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRANA--LAANYPFATIDKNVG   41 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHHT--TCSSCCGGGGSTTEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceecccee
Confidence            588999999999999999987743  344456778877655

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=95.59  E-value=0.003  Score=44.28  Aligned_cols=28  Identities=25%  Similarity=0.770  Sum_probs=23.7

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChh
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPE   31 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~   31 (330)
                      ++.|+++.|++||.++.   ++..|++|+..
T Consensus        30 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~y   57 (60)
T 2gnc_A           30 SLLLYHRASEDWWEGRH---NGIDGLVPHQY   57 (60)
T ss_dssp             EEEEEEEEETTEEEEEE---TTEEEEEEGGG
T ss_pred             EEEEEEecCCCEEEEEE---CCeEEEEeHhh
Confidence            47899998899999997   36899999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.59  E-value=0.0067  Score=50.14  Aligned_cols=24  Identities=25%  Similarity=0.573  Sum_probs=21.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..|+|+|++|||||||+++|....
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc
Confidence            368999999999999999998653

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.59  E-value=0.0077  Score=54.49  Aligned_cols=27  Identities=19%  Similarity=0.399  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .++.++|.||+|+|||+|++.|.....
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            457899999999999999999988753

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.59  E-value=0.008  Score=51.60  Aligned_cols=25  Identities=24%  Similarity=0.484  Sum_probs=22.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +.++|.||+|+|||+|++.+.+...
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5899999999999999999987653

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=95.58  E-value=0.0047  Score=43.25  Aligned_cols=29  Identities=17%  Similarity=0.546  Sum_probs=24.2

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ++.|+++.|++||.++.   ++..|++|+...
T Consensus        28 ~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv   56 (60)
T 1w70_A           28 VIFLLSRINKDWLEGTV---RGATGIFPLSFV   56 (60)
T ss_dssp             EEEEEEECSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEeCCCCeEEEEE---CCCEEEechHHE
Confidence            47899999999999985   368999998653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.57  E-value=0.0062  Score=55.73  Aligned_cols=26  Identities=19%  Similarity=0.578  Sum_probs=22.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +..++|+||+|+|||||.+.|....|
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~p   55 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLLP   55 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCC
Confidence            67999999999999999998876544

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=95.57  E-value=0.0012  Score=48.97  Aligned_cols=30  Identities=23%  Similarity=0.706  Sum_probs=24.8

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|++++|.+||+++.  .++..|++|+...
T Consensus        44 ~i~v~~~~~~~Ww~~~~--~~g~~G~~P~~yv   73 (77)
T 1awj_A           44 EYYLLDSSEIHWWRVQD--KNGHEGYAPSSYL   73 (77)
T ss_dssp             CCSCCCTTSSSBCCCCC--SSSCCCCCBSTTC
T ss_pred             EEEEEEecCCCCEEEEE--CCCCEEEEehHHE
Confidence            57889999999999975  3578999999764

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.57  E-value=0.0041  Score=45.13  Aligned_cols=31  Identities=19%  Similarity=0.315  Sum_probs=24.8

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|+++.|++||.++.. .++..|++|+...
T Consensus        32 ~i~v~~~~~~~W~~g~~~-~~g~~G~~P~~yv   62 (71)
T 2gqi_A           32 MFIVHNELEDGWMWVTNL-RTDEQGLIVEDLV   62 (71)
T ss_dssp             BCCCCEECSSSCEEEECT-TTCCEEEECTTSE
T ss_pred             EEEEEEecCCCEEEEEEC-CCCCEEEeeHHHE
Confidence            577888999999999843 3578999998654

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=95.57  E-value=0.004  Score=44.81  Aligned_cols=32  Identities=22%  Similarity=0.673  Sum_probs=25.9

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhHHH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQE   34 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~~e   34 (330)
                      ++.|++++|++||+++.  .++..|++|+...++
T Consensus        30 ~i~v~~~~~~~Ww~g~~--~~g~~G~~P~~yv~~   61 (69)
T 4esr_A           30 IIRVFFKDNEDWWYGSI--GKGQEGYFPANHVAS   61 (69)
T ss_dssp             EEEEEEECSSSEEEEEE--ETTEEEEEEGGGEEE
T ss_pred             EEEEEEecCCCeEEEEe--CCCCEEEEchHHeEE
Confidence            47899999999999986  246889999976543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.55  E-value=0.006  Score=51.84  Aligned_cols=22  Identities=18%  Similarity=0.665  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999754

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=95.55  E-value=0.0055  Score=42.91  Aligned_cols=29  Identities=21%  Similarity=0.825  Sum_probs=24.2

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ++.|+++.|++||+++.   +++.|++|+...
T Consensus        30 ~i~v~~~~~~~Ww~~~~---~g~~G~~P~~yv   58 (62)
T 3ngp_A           30 ILTLLNSTNKDWWKIEV---NGRQGFVPAAYL   58 (62)
T ss_dssp             EEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEeEecCCCeEEEEE---CCEEEEEEHHHE
Confidence            47899999999999985   468899998653

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=95.55  E-value=0.0059  Score=42.95  Aligned_cols=31  Identities=16%  Similarity=0.371  Sum_probs=25.1

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |+.|+++.|++||.++.. .++..|++|+...
T Consensus        27 ~i~v~~~~~~~W~~g~~~-~~g~~G~fP~~yv   57 (62)
T 2fpe_A           27 PLLVELQAEDYWYEAYNM-RTGARGVFPAYYA   57 (62)
T ss_dssp             EEEEEEECTTSEEEEEET-TTCCEEEEEGGGE
T ss_pred             EEEEEEecCCCEEEEEEC-CCCCEEEechHHE
Confidence            478999999999999863 2578999998653

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.54  E-value=0.008  Score=55.51  Aligned_cols=27  Identities=19%  Similarity=0.449  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .++.|+|.||+|+|||+|++.|.....
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            357899999999999999999998754

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=95.54  E-value=0.0069  Score=45.09  Aligned_cols=31  Identities=42%  Similarity=0.871  Sum_probs=25.7

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|.|++++|++||.++... ++..|++|+...
T Consensus        29 ~i~vl~~~~~~Ww~g~~~~-~g~~G~~P~~yv   59 (79)
T 3cqt_A           29 KFQILNSSEGDWWEARSLT-TGETGYIPSIYL   59 (79)
T ss_dssp             EEEEEECTTSSEEEEEETT-TCCEEEEEGGGE
T ss_pred             EEEEEEecCCCeEEEEECC-CCCEEEeehHHe
Confidence            4789999999999999742 568999998764

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=95.53  E-value=0.0049  Score=44.43  Aligned_cols=31  Identities=19%  Similarity=0.549  Sum_probs=25.7

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|+.+.|++||+++..+ .+..|++|+...
T Consensus        31 ~i~v~~~~~~~Ww~g~~~~-~g~~G~~P~~yv   61 (70)
T 2ecz_A           31 RITLLRQVDENWYEGRIPG-TSRQGIFPITYV   61 (70)
T ss_dssp             BCEEEEEEETTEEEEEETT-TTEEEEECTTTE
T ss_pred             EEEEEEecCCCeEEEEECC-CCCEEEEchHHE
Confidence            5789999899999998764 468999998654

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.53  E-value=0.017  Score=55.26  Aligned_cols=25  Identities=20%  Similarity=0.450  Sum_probs=22.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+.|+|.||+|+|||+|++.+....
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~  172 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAES  172 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhh
Confidence            4799999999999999999998764

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=95.53  E-value=0.0044  Score=43.99  Aligned_cols=29  Identities=14%  Similarity=0.736  Sum_probs=24.4

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |+.|+++.|++||+++.   ++..|++|+...
T Consensus        13 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   41 (63)
T 1tuc_A           13 ILTLLNSTNKDWWKVEV---NDRQGFVPAAYV   41 (63)
T ss_dssp             EEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEecCCCEEEEEE---CCcEEEEeHHHE
Confidence            57899999999999974   457899998764

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=95.53  E-value=0.0054  Score=43.24  Aligned_cols=29  Identities=31%  Similarity=0.810  Sum_probs=24.1

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|+++.|++||+++..   +..|++|+...
T Consensus        29 ~i~v~~~~~~~Ww~g~~~---g~~G~~P~~yv   57 (62)
T 1uj0_A           29 LITVLDDSDANWWQGENH---RGTGLFPSNFV   57 (62)
T ss_dssp             EEEEEECCSSSEEEEEET---TEEEEEEGGGE
T ss_pred             EEEEEEeCCCCEEEEEEC---CCEEEechhHE
Confidence            578999999999999875   35899998654

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.50  E-value=0.0061  Score=45.88  Aligned_cols=30  Identities=23%  Similarity=0.757  Sum_probs=25.1

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|.|++++|++||+++..  ++..|+||+...
T Consensus        43 ~i~v~~~~~~~Ww~~~~~--~g~~G~~P~~yv   72 (85)
T 2yuq_A           43 EYCLLDSSEIHWWRVQDR--NGHEGYVPSSYL   72 (85)
T ss_dssp             EEEEEECCSSSEEEEECS--SSCEEEEETTTC
T ss_pred             EEEEEEecCCCeEEEEEC--CCCEEEEehHHe
Confidence            578999999999999852  468999999765

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=95.50  E-value=0.0078  Score=41.85  Aligned_cols=31  Identities=23%  Similarity=0.647  Sum_probs=24.6

Q ss_pred             CcEEEeC-CCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISK-DDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~-~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ++.|+++ ++++||.++.. .++..|++|+...
T Consensus        26 ~i~v~~~~~~~~Ww~g~~~-~~g~~G~~P~~yv   57 (60)
T 2v1q_A           26 KVYILDDKKSKDWWMCQLV-DSGKSGLVPAQFI   57 (60)
T ss_dssp             EEEEEESSSCSSEEEEEET-TTCCEEEEEGGGE
T ss_pred             EEEEEeCCCCCCCEEEEEC-CCCCEEEEEHHHE
Confidence            4788998 59999999874 3478999998653

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.50  E-value=0.0063  Score=56.93  Aligned_cols=24  Identities=21%  Similarity=0.409  Sum_probs=21.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +.++|+|++|+|||||++.|....
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            478999999999999999999765

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.50  E-value=0.0087  Score=49.07  Aligned_cols=25  Identities=28%  Similarity=0.171  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..+|+|.||+|+||++|++.|....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            4689999999999999999987654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.48  E-value=0.0088  Score=53.13  Aligned_cols=27  Identities=22%  Similarity=0.493  Sum_probs=24.1

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      ++.|+|.|+.||||||+++.|.+.+++
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~   28 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            457999999999999999999998753

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.48  E-value=0.0075  Score=51.66  Aligned_cols=23  Identities=17%  Similarity=0.524  Sum_probs=20.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      --|+|+|++|||||||+++|...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            36899999999999999999854

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.48  E-value=0.011  Score=50.70  Aligned_cols=23  Identities=13%  Similarity=0.355  Sum_probs=21.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ..|+|+|++|||||||.++|...
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999865

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=95.48  E-value=0.0065  Score=43.96  Aligned_cols=31  Identities=32%  Similarity=0.812  Sum_probs=25.0

Q ss_pred             CcEEEe-CCCCCceeEEeCCCCCCceeeCChhHH
Q psy933            1 MFQIIS-KDDHNWWQARKDNVAGSAGLIPSPELQ   33 (330)
Q Consensus         1 iL~v~~-~~D~~WWQA~~~~~~~~~GlIPS~~~~   33 (330)
                      +|+|++ ..|++||+++..  ++..|++|+...+
T Consensus        35 ~i~v~~~~~~~~Ww~g~~~--~g~~G~~P~~yv~   66 (71)
T 1csk_A           35 VLTIVAVTKDPNWYKAKNK--VGREGIIPANYVQ   66 (71)
T ss_dssp             EEEEEEECSSTTEEEEECT--TSCEEEEETTSEE
T ss_pred             EEEEeECCCCCCCEEEEeC--CCCEEEEehHHeE
Confidence            478898 889999999843  5789999997653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=95.48  E-value=0.0064  Score=59.08  Aligned_cols=42  Identities=24%  Similarity=0.310  Sum_probs=24.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE  136 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E  136 (330)
                      +..|+|+|++|||||||.++|.....  -....|.||..|..|.
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~   63 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESR   63 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC---------------CCSEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEE
Confidence            35699999999999999999986532  3445678888886653

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=95.47  E-value=0.0078  Score=44.07  Aligned_cols=29  Identities=21%  Similarity=0.244  Sum_probs=24.1

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |+.|+++.|.+||+++.   ++..|++||...
T Consensus        35 ~i~v~~~~~~gWw~g~~---~g~~G~fP~~yv   63 (73)
T 2ebp_A           35 IIDIISKPPMGTWMGLL---NNKVGTFKFIYV   63 (73)
T ss_dssp             EEEEEECCSSSCEEEEC---SSCEEEECSTTE
T ss_pred             EEEEEEeCCCCeEEEEE---CCCEEEEeHHHE
Confidence            57899999999999975   357899999653

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=95.47  E-value=0.0061  Score=43.65  Aligned_cols=29  Identities=24%  Similarity=0.559  Sum_probs=24.3

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |+.|+++.|++||.++.   ++..|++|+...
T Consensus        25 ~i~v~~~~~~~Ww~g~~---~g~~G~fP~~yv   53 (65)
T 2nwm_A           25 IVYIHKEVDKNWLEGEH---HGRLGIFPANYV   53 (65)
T ss_dssp             EEEEEECCTTTCEEEEE---TTEEEEECGGGE
T ss_pred             EEEEEEecCCCEEEEEE---CCcEEEEehhhE
Confidence            47899999999999984   468899998654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.47  E-value=0.005  Score=59.13  Aligned_cols=27  Identities=19%  Similarity=0.380  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+||||||+++.|+..++
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            456899999999999999999987654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.46  E-value=0.009  Score=51.51  Aligned_cols=24  Identities=8%  Similarity=-0.025  Sum_probs=21.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~  115 (330)
                      .+..++|+||+|+|||||+..|+.
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999986

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=95.46  E-value=0.0033  Score=69.67  Aligned_cols=27  Identities=30%  Similarity=0.525  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|...++
T Consensus      1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A         1058 KGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp             SSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            567999999999999999999887654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.45  E-value=0.0084  Score=49.54  Aligned_cols=22  Identities=18%  Similarity=0.477  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.45  E-value=0.0088  Score=50.81  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +.++|.||+|+|||+|++.+.+..
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            459999999999999999998763

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=95.45  E-value=0.0051  Score=44.18  Aligned_cols=29  Identities=14%  Similarity=0.396  Sum_probs=24.2

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |++|++++|++||++..   ++..|++||...
T Consensus        32 ~i~v~~~~~~gWw~g~~---~g~~G~fP~~yv   60 (67)
T 2eyx_A           32 LVKVTKINVSGQWEGEC---NGKRGHFPFTHV   60 (67)
T ss_dssp             EEEEEEECTTSEEEEEE---TTEEEEEEGGGB
T ss_pred             EEEEEEecCCCEEEEEE---CCCEEEEehHhE
Confidence            57899999999999975   368899998653

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=95.44  E-value=0.0035  Score=44.98  Aligned_cols=29  Identities=24%  Similarity=0.596  Sum_probs=24.1

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |+.|+++.|++||.++.   ++..|++||...
T Consensus        25 ~i~v~~~~~~gWw~g~~---~g~~G~fP~~yv   53 (65)
T 2fei_A           25 IIDINEEVEEGWWSGTL---NNKLGLFPSNFV   53 (65)
T ss_dssp             EEECCCCSSSSEEEEES---SSCEEEEETTTS
T ss_pred             EEEEEEecCCCEEEEEE---CCcEEEecHHHE
Confidence            46788999999999984   468999999654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.44  E-value=0.0084  Score=54.93  Aligned_cols=24  Identities=21%  Similarity=0.422  Sum_probs=21.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      -++|+||+|+|||||++.|+....
T Consensus        46 GvlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHcC
Confidence            499999999999999999998754

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.43  E-value=0.019  Score=60.61  Aligned_cols=64  Identities=22%  Similarity=0.431  Sum_probs=42.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      .++-|+|.||+|+|||+|++.|+.+..                     ..++.|+-.++.               +.++|
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~elg---------------------~~~~~v~~~~l~---------------sk~~g  280 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANETG---------------------AFFFLINGPEIM---------------SKLAG  280 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTTTT---------------------CEEEEEEHHHHH---------------SSCTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC---------------------CeEEEEEhHHhh---------------cccch
Confidence            456799999999999999999987542                     234444433331               34567


Q ss_pred             ccHHHHHHHHHh---CCeEEEEe
Q psy933          172 TKLETIRRIHQE---GKIAILDV  191 (330)
Q Consensus       172 ts~~~i~~v~~~---gk~~vldv  191 (330)
                      .+...++++++.   ...||+-+
T Consensus       281 ese~~lr~lF~~A~~~~PsIIfI  303 (806)
T 3cf2_A          281 ESESNLRKAFEEAEKNAPAIIFI  303 (806)
T ss_dssp             HHHHHHHHHHHHHTTSCSEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCeEEEE
Confidence            777777776653   45666665

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=95.42  E-value=0.0067  Score=42.33  Aligned_cols=28  Identities=29%  Similarity=0.845  Sum_probs=23.3

Q ss_pred             CcEEEeCC--CCCceeEEeCCCCCCceeeCChh
Q psy933            1 MFQIISKD--DHNWWQARKDNVAGSAGLIPSPE   31 (330)
Q Consensus         1 iL~v~~~~--D~~WWQA~~~~~~~~~GlIPS~~   31 (330)
                      +++|+++.  +++||.++.   ++..|++|+..
T Consensus        27 ~i~v~~~~~~~~~Ww~g~~---~g~~G~~P~~y   56 (60)
T 1oot_A           27 VITILKKSDSQNDWWTGRV---NGREGIFPANY   56 (60)
T ss_dssp             EEEEEECCSCTTSEEEEEE---TTEEEEEEGGG
T ss_pred             EEEEEEeCCCCCCeEEEEE---CCEEEEEeHHH
Confidence            47888887  789999987   46899999865

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=95.41  E-value=0.0082  Score=42.20  Aligned_cols=30  Identities=27%  Similarity=0.719  Sum_probs=23.4

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|.|++++| +||+++... ++..|++|+...
T Consensus        30 ~i~v~~~~~-~Ww~g~~~~-~g~~G~~P~~yv   59 (62)
T 2iim_A           30 QLRILEQSG-EWWKAQSLT-TGQEGFIPFNFV   59 (62)
T ss_dssp             EEEEEECCS-SEEEEEETT-TCCEEEEEGGGE
T ss_pred             EEEEEEcCC-CEEEEEECC-CCCEEEEEHHHE
Confidence            478899875 999998642 468999998653

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=95.41  E-value=0.14  Score=50.48  Aligned_cols=22  Identities=23%  Similarity=0.501  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|+|||||.++|+..
T Consensus        35 ki~iiG~~~~GKSTLi~~Ll~~   56 (483)
T 3p26_A           35 SFVVLGHVDAGKSTLMGRLLYD   56 (483)
T ss_dssp             EEEEESCGGGTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999999866

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=95.41  E-value=0.0077  Score=57.71  Aligned_cols=56  Identities=14%  Similarity=0.086  Sum_probs=37.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC----CCCccccccccccCCCCcccCCeeEEEecccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF----PDKYAYPVPHTTRSPRSDEENGRAYYFISHDE  149 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~----p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~  149 (330)
                      ++.|+++|++|+|||||.|.|....    ........|.||+.+.....+. ...++|..-
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG  221 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES-GATLYDTPG  221 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST-TCEEEECCS
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC-CeEEEeCCC
Confidence            4679999999999999999999861    1123456778888765443321 244554443

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=95.41  E-value=0.0092  Score=41.22  Aligned_cols=30  Identities=23%  Similarity=0.665  Sum_probs=24.4

Q ss_pred             CcEEEeCCC-CCceeEEeCCCCCCceeeCChh
Q psy933            1 MFQIISKDD-HNWWQARKDNVAGSAGLIPSPE   31 (330)
Q Consensus         1 iL~v~~~~D-~~WWQA~~~~~~~~~GlIPS~~   31 (330)
                      ++.|+.++| ++||.++.. .++..|++|+..
T Consensus        25 ~i~v~~~~~~~~W~~g~~~-~~g~~G~~P~~y   55 (58)
T 1zuu_A           25 KISLVARDTGSGWTKINND-TTGETGLVPTTY   55 (58)
T ss_dssp             CEEEEECCSSSSEEEEEET-TTTEEEEEEGGG
T ss_pred             EEEEeEcCCCCCCEEEEEC-CCCCEEEEEHHH
Confidence            578999987 899999874 246789999864

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.40  E-value=0.0077  Score=43.28  Aligned_cols=29  Identities=14%  Similarity=0.693  Sum_probs=24.3

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||+|+.+.|++||.++.   ++..|++|+...
T Consensus        31 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   59 (68)
T 2dl4_A           31 IITLLEDSNEDWWKGKI---QDRIGFFPANFV   59 (68)
T ss_dssp             EEEEEECCCSSEEEEEC---SSCEEEEETTTE
T ss_pred             EEEEEEeCCCCEEEEEE---CCcEEEEehHHe
Confidence            57899999999999984   458999998654

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=95.40  E-value=0.0082  Score=46.38  Aligned_cols=30  Identities=20%  Similarity=0.450  Sum_probs=25.0

Q ss_pred             CcEEE-eCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQII-SKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~-~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|+ .++|++||+++..  ++..|++|+...
T Consensus        47 ~i~v~~~~~~~gWw~g~~~--~g~~G~~Psnyv   77 (96)
T 1wie_A           47 YLYVYGDMDEDGFYEGELL--DGQRGLVPSNFV   77 (96)
T ss_dssp             EEEEESSCCSSSCCEEEET--TCCBCBCCTTSE
T ss_pred             EEEEeEecCCCCEEEEEEC--CCCEEEEchHHE
Confidence            57899 8899999999963  368999999765

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.40  E-value=0.011  Score=53.63  Aligned_cols=25  Identities=28%  Similarity=0.602  Sum_probs=22.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +-++|+||+|+|||||++.|.....
T Consensus        74 ~gvll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           74 KGVLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECCCcChHHHHHHHHHHHcC
Confidence            4599999999999999999988764

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=95.40  E-value=0.0051  Score=44.90  Aligned_cols=29  Identities=14%  Similarity=0.736  Sum_probs=24.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |++|++++|++||.++.   ++..|++|+...
T Consensus        23 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   51 (73)
T 2kxd_A           23 ILTLLNSTNKDWWKVEV---NDRQGFVPAAYV   51 (73)
T ss_dssp             EEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEecCCCEEEEEE---CCCEEEEehHHe
Confidence            57899999999999974   457899998764

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=95.38  E-value=0.0056  Score=44.90  Aligned_cols=31  Identities=23%  Similarity=0.468  Sum_probs=25.4

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|.|+++.|++||+++.. .++..|++|+...
T Consensus        29 ~i~v~~~~~~gWw~g~~~-~~g~~G~~P~~yv   59 (73)
T 2lcs_A           29 IVFISYKHGQGWLVAENE-SGSKTGLVPEEFV   59 (73)
T ss_dssp             EEEEEEEETTTEEEEECT-TSSCEEEEESTTE
T ss_pred             EEEEEEEcCCCEEEEEEC-CCCCEEEeeHHHE
Confidence            478999999999999865 2478999999764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.38  E-value=0.011  Score=49.38  Aligned_cols=23  Identities=13%  Similarity=0.358  Sum_probs=20.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      --|+|+|++|||||||.++|...
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999865

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=95.37  E-value=0.0044  Score=43.83  Aligned_cols=32  Identities=13%  Similarity=0.598  Sum_probs=25.3

Q ss_pred             CcEEEeCCCCCceeEEeCC---CC--CCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDN---VA--GSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~---~~--~~~GlIPS~~~   32 (330)
                      +|.|+++.|++||.++...   ..  +..|++|+...
T Consensus        25 ~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv   61 (65)
T 2oaw_A           25 ILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV   61 (65)
T ss_dssp             EEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGE
T ss_pred             EEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHe
Confidence            5789999999999998751   11  78999998653

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.37  E-value=0.011  Score=49.92  Aligned_cols=24  Identities=21%  Similarity=0.483  Sum_probs=21.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ...+|+||+|+|||||++.|.-..
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHH
Confidence            389999999999999999987654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.37  E-value=0.0099  Score=52.09  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=22.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .+..++|+||+|+|||||+..|+..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4579999999999999999999874

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=95.36  E-value=0.0098  Score=55.25  Aligned_cols=37  Identities=16%  Similarity=0.422  Sum_probs=26.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS  131 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~  131 (330)
                      .-|+|+|++|||||+|.++|..... .+....+.+|+.
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~~~~-~~~~~~~~~Ti~   40 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFSNYS-AFDTRRLGATID   40 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHSCCC-TGGGGGCCCCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-CccccCcCCccc
Confidence            4689999999999999999987643 244334445543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.36  E-value=0.0091  Score=51.71  Aligned_cols=25  Identities=20%  Similarity=0.430  Sum_probs=22.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+.|+|+|++|||||||+++|+...
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999999764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.36  E-value=0.011  Score=50.10  Aligned_cols=23  Identities=17%  Similarity=0.556  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .-|+|+|++|||||||+++|...
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999999865

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=95.36  E-value=0.0069  Score=42.86  Aligned_cols=29  Identities=28%  Similarity=0.611  Sum_probs=24.1

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|.|+++.|++||.++.   ++..|++|+...
T Consensus        33 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   61 (65)
T 3ulr_B           33 IITNIEMIDDGWWRGVC---KGRYGLFPANYV   61 (65)
T ss_dssp             EEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEecCCCEEEEEE---CCcEEEEehHHe
Confidence            47899999999999985   467899998653

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=95.36  E-value=0.0046  Score=42.89  Aligned_cols=31  Identities=23%  Similarity=0.468  Sum_probs=24.9

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ++.|+++.+++||.++.. .++..|++|+...
T Consensus        25 ~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~yv   55 (59)
T 1yn8_A           25 IVFISYKHGQGWLVAENE-SGSKTGLVPEEFV   55 (59)
T ss_dssp             EEEEEEEEETTEEEEECT-TSSCEEEEEGGGE
T ss_pred             EEEEEEcCCCCeEEEEEC-CCCCEEEEehHHe
Confidence            478899999999999864 2468999998653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.35  E-value=0.0063  Score=51.36  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=21.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ....|+|+|++|||||||+++|...
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3457999999999999999999854

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=95.35  E-value=0.51  Score=45.22  Aligned_cols=26  Identities=8%  Similarity=0.254  Sum_probs=22.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      -.|+++|++|+|||||.++|.....+
T Consensus         9 ~~I~vvG~~~~GKSTLi~~L~~~~~~   34 (403)
T 3sjy_A            9 VNIGVVGHVDHGKTTLVQAITGIWTS   34 (403)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHSCCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcccc
Confidence            47999999999999999999875443

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.35  E-value=0.013  Score=49.17  Aligned_cols=23  Identities=13%  Similarity=0.358  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .-|+|+|++|||||||.++|...
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999854

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=95.34  E-value=0.0036  Score=43.77  Aligned_cols=29  Identities=28%  Similarity=0.910  Sum_probs=23.4

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ++.|+++ |++||+++..  ++..|++|+...
T Consensus        25 ~i~v~~~-~~~Ww~~~~~--~g~~G~~P~~yv   53 (60)
T 1i07_A           25 VLEILDD-RRQWWKVRNA--SGDSGFVPNNIL   53 (60)
T ss_dssp             EEEECGG-GCCEEEEECT--TSCEEEEEGGGE
T ss_pred             EEEEEEc-CCCeEEEEEC--CCCEEEEEHHHe
Confidence            4678888 8999999854  378999998654

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=95.33  E-value=0.0065  Score=44.07  Aligned_cols=29  Identities=31%  Similarity=0.807  Sum_probs=24.1

Q ss_pred             CcEEEeCC--CCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKD--DHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~--D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|++++  |++||.++.   ++..|++|+...
T Consensus        26 ~i~vl~~~~~~~gWw~g~~---~g~~G~~P~~yV   56 (69)
T 2ydl_A           26 IVTLINKDCIDVGWWEGEL---NGRRGVFPDNFV   56 (69)
T ss_dssp             EEEEEESCCSSTTEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEcCCCCCCEEEEEE---CCcEEEecHHHE
Confidence            47899986  899999986   468899998664

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.31  E-value=0.0092  Score=50.12  Aligned_cols=22  Identities=14%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.29  E-value=0.011  Score=42.46  Aligned_cols=31  Identities=13%  Similarity=0.339  Sum_probs=25.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|+|+.+.|++||.++.. .++..|++|+...
T Consensus        31 ~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~yv   61 (70)
T 2ct3_A           31 RVDVMQQCDDGWFVGVSR-RTQKFGTFPGNYV   61 (70)
T ss_dssp             EEEEEEECSSSCEEEEES-SSCCEEEECTTTE
T ss_pred             EEEEEEECCCCEEEEEEC-CCCCEEEechHHe
Confidence            478999999999999875 2478999998654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.28  E-value=0.0099  Score=49.18  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+|+|++|||||||.++|....
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            68999999999999999998753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.27  E-value=0.0083  Score=49.77  Aligned_cols=22  Identities=18%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||+|+++|...
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=95.26  E-value=0.0055  Score=41.85  Aligned_cols=28  Identities=29%  Similarity=0.575  Sum_probs=23.3

Q ss_pred             CcEEEeCCC-CCceeEEeCCCCCCceeeCChh
Q psy933            1 MFQIISKDD-HNWWQARKDNVAGSAGLIPSPE   31 (330)
Q Consensus         1 iL~v~~~~D-~~WWQA~~~~~~~~~GlIPS~~   31 (330)
                      |+.|+.++| ++||.++.   ++..|++|+..
T Consensus        24 ~i~v~~~~~~~~W~~g~~---~g~~G~~P~~y   52 (54)
T 2a28_A           24 IITVIRGDDGSGWTYGEC---DGLKGLFPTSY   52 (54)
T ss_dssp             EEEEEECCCSSSEEEEEE---TTEEEEEEGGG
T ss_pred             EEEEEEecCCCCEEEEEE---CCeEEEeeHHH
Confidence            478899986 79999997   56889999864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.26  E-value=0.0078  Score=55.97  Aligned_cols=21  Identities=33%  Similarity=0.687  Sum_probs=18.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHh
Q psy933           95 TLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~  115 (330)
                      -|+|+||+|||||||++.|..
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            469999999999999999875

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.26  E-value=0.01  Score=56.90  Aligned_cols=27  Identities=19%  Similarity=0.445  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..|+|+||+||||||+++.|+..++
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l~  182 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRLK  182 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence            457999999999999999999987653

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.26  E-value=0.0054  Score=44.63  Aligned_cols=29  Identities=28%  Similarity=0.791  Sum_probs=24.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|+.+.|++||.++.   ++..|++|+...
T Consensus        33 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   61 (72)
T 2dl8_A           33 SLLLYQRASDDWWEGRH---NGIDGLIPHQYI   61 (72)
T ss_dssp             EEEEEEEEETTEEEEEE---TTEEEEECSSSE
T ss_pred             EEEEEeecCCCEEEEEE---CCEEEEEchHHe
Confidence            57899998999999997   468999998654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=95.25  E-value=0.0042  Score=53.71  Aligned_cols=22  Identities=27%  Similarity=0.605  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999998743

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.25  E-value=0.0096  Score=50.19  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=21.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      --|+|+|++|||||||.++|....
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998653

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.25  E-value=0.0067  Score=54.72  Aligned_cols=27  Identities=22%  Similarity=0.281  Sum_probs=23.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      +..|+|.|+.||||||+++.|.+.+.+
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~~l~~   50 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQLCED   50 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            358999999999999999999988753

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=95.24  E-value=0.0098  Score=44.80  Aligned_cols=31  Identities=39%  Similarity=0.775  Sum_probs=25.6

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|.|++++|++||+++.. .++..|++|+...
T Consensus        30 ~i~vl~~~~~~Ww~g~~~-~~g~~G~~P~~yv   60 (84)
T 4ag1_C           30 KFQILEFGPGDWWEARSL-TTGETGYIPSNYV   60 (84)
T ss_dssp             EEEEEECCSSSEEEEEET-TTCCEEEEEGGGE
T ss_pred             EEEEEEecCCCeEEEEEC-CCCCEEEEehHHe
Confidence            478999999999999975 3467899998664

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.23  E-value=0.013  Score=51.07  Aligned_cols=22  Identities=27%  Similarity=0.665  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999999865

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.23  E-value=0.009  Score=55.36  Aligned_cols=26  Identities=19%  Similarity=0.374  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ...+++|.||+|+|||+|++.+....
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            34689999999999999999998764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.23  E-value=0.011  Score=51.45  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=21.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +.|+|+|++|||||||+++|+...
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            578999999999999999999763

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.23  E-value=0.01  Score=55.62  Aligned_cols=24  Identities=17%  Similarity=0.538  Sum_probs=21.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..++|+||+|+|||||++.|+...
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            579999999999999999998875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.22  E-value=0.011  Score=56.88  Aligned_cols=27  Identities=15%  Similarity=0.298  Sum_probs=23.7

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..++.++|+||+|+|||||++.|....
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            356799999999999999999998764

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=95.21  E-value=0.0076  Score=43.52  Aligned_cols=29  Identities=34%  Similarity=0.878  Sum_probs=23.0

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||+|+++ |++||+++..  ++..|++|+...
T Consensus        31 ~i~v~~~-~~~Ww~g~~~--~g~~G~~P~~yv   59 (70)
T 2vkn_A           31 ILQVSDI-EGRWWKARRA--NGETGIIPSNYV   59 (70)
T ss_dssp             EEEEECT-TSSEEEEECT--TSCEEEEEGGGE
T ss_pred             EEEEEEc-CCCeEEEEEC--CCCEEEEehHHE
Confidence            4678876 7899999854  578999998664

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.21  E-value=0.0099  Score=54.01  Aligned_cols=27  Identities=26%  Similarity=0.509  Sum_probs=23.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      +.+++|.||+|+|||+|++.|.+....
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~   76 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANA   76 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            468999999999999999999987643

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=95.20  E-value=0.011  Score=42.64  Aligned_cols=30  Identities=30%  Similarity=0.882  Sum_probs=24.6

Q ss_pred             CcEEEeC--CCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISK--DDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~--~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|+++  .|++||.++..  ++..|++|+...
T Consensus        30 ~i~v~~~~~~~~~Ww~g~~~--~g~~G~~P~~yv   61 (71)
T 1u5s_A           30 TMEVIEKPENDPEWWKCKNA--RGQVGLVPKNYV   61 (71)
T ss_dssp             CEEEEECCCTTTCEEEEEET--TTEEEEEETTSE
T ss_pred             EEEEEECCCCCCCCEEEEeC--CCCEEEEeHHHE
Confidence            5789999  78999999853  468999999654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.19  E-value=0.011  Score=49.12  Aligned_cols=22  Identities=18%  Similarity=0.339  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999854

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=95.19  E-value=0.0073  Score=42.53  Aligned_cols=29  Identities=17%  Similarity=0.552  Sum_probs=24.0

Q ss_pred             CcEEEeC-CCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISK-DDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~-~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|+.+ .|++||.++.   ++..|++|+...
T Consensus        25 ~i~v~~~~~~~~Ww~g~~---~g~~G~~P~~yv   54 (62)
T 2j6f_A           25 IIRNVKKLQEEGWLEGEL---NGRRGMFPDNFV   54 (62)
T ss_dssp             EEEEEEECSSTTEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEecCCCCEEEEEE---CCcEEEechHHE
Confidence            4788888 8999999985   468999998654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.19  E-value=0.012  Score=53.94  Aligned_cols=26  Identities=8%  Similarity=0.271  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..++|+||+|+|||||++.|+...
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999887654

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=95.17  E-value=0.0054  Score=46.40  Aligned_cols=32  Identities=22%  Similarity=0.533  Sum_probs=24.2

Q ss_pred             CcEEEeCC--CCCceeEEeCC-CCCCceeeCChhH
Q psy933            1 MFQIISKD--DHNWWQARKDN-VAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~--D~~WWQA~~~~-~~~~~GlIPS~~~   32 (330)
                      +|+|++..  |++||-||... ...+.|||||..+
T Consensus        41 ~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           41 TVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             EEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             EEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            36788876  69999999843 3456799999664

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=95.17  E-value=0.0074  Score=43.99  Aligned_cols=29  Identities=21%  Similarity=0.597  Sum_probs=24.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|+|+++.|++||.++.   ++..|++|+...
T Consensus        37 ~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv   65 (73)
T 3c0c_A           37 LITLTNQIDENWYEGML---HGQSGFFPLSYV   65 (73)
T ss_dssp             EEEEEEECSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEEecCCCEEEEEE---CCCEEEeChHHE
Confidence            47899999999999986   468899998653

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=95.16  E-value=0.0062  Score=44.72  Aligned_cols=28  Identities=29%  Similarity=0.771  Sum_probs=23.2

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChh
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPE   31 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~   31 (330)
                      ||.|+++.|++||+++..   +..|++|+..
T Consensus        41 ~i~Vl~~~~~gWw~g~~~---g~~G~fP~~y   68 (72)
T 2l0a_A           41 IITVLDDSDPNWWKGETH---QGIGLFPSNF   68 (72)
T ss_dssp             EEEEEEEEETTEEEEECS---SCEEECTTCC
T ss_pred             EEEEEEecCCCEEEEEEC---CCEEEechhh
Confidence            578999999999999854   4589999864

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=95.14  E-value=0.0089  Score=57.93  Aligned_cols=39  Identities=15%  Similarity=0.083  Sum_probs=22.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD  135 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~  135 (330)
                      .|+|+|.+|||||||.++|....  ......|.||+.|..|
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g   40 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVG   40 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceE
Confidence            48899999999999999998654  2344567788877655

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.14  E-value=0.015  Score=48.17  Aligned_cols=23  Identities=17%  Similarity=0.255  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      --|+|+|++|||||||.++|...
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999864

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.14  E-value=0.01  Score=44.97  Aligned_cols=29  Identities=17%  Similarity=0.481  Sum_probs=24.3

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||+|++++|.+||++..   ++..|++|+...
T Consensus        42 ~i~v~~~~~~~Ww~g~~---~g~~G~fP~~yv   70 (88)
T 2dbk_A           42 IVKVTRMNINGQWEGEV---NGRKGLFPFTHV   70 (88)
T ss_dssp             EEEEEEECTTSCEEEEC---SSCEEEECTTTE
T ss_pred             EEEEEEecCCCEEEEEe---CCCEEEEehHHe
Confidence            57899999999999964   368899999664

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.13  E-value=0.013  Score=55.34  Aligned_cols=26  Identities=23%  Similarity=0.547  Sum_probs=23.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +++|+|.||+|+|||++++.|.+...
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999998764

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=95.13  E-value=0.01  Score=42.41  Aligned_cols=29  Identities=24%  Similarity=0.654  Sum_probs=24.2

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ++.|+.+.|++||.++.   ++..|++|+...
T Consensus        31 ~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv   59 (68)
T 2dl3_A           31 IVYIYKQIDQNWYEGEH---HGRVGIFPRTYI   59 (68)
T ss_dssp             EEEEEECCSTTEEEEEC---SSCEEEEETTTE
T ss_pred             EEEEeEecCCCEEEEEE---CCCEEEEchHHE
Confidence            47899999999999983   468899998654

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=95.12  E-value=0.009  Score=42.95  Aligned_cols=29  Identities=24%  Similarity=0.777  Sum_probs=23.9

Q ss_pred             CcEEEeCC---CCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKD---DHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~---D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +++|++++   |++||.++.   ++..|++|+...
T Consensus        27 ~i~v~~~~~~~~~~Ww~g~~---~g~~G~~P~~yv   58 (69)
T 1wyx_A           27 IMTVLEQDTQGLDGWWLCSL---HGRQGIVPGNRL   58 (69)
T ss_dssp             EEEEEETTGGGCTTEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEeECCCCCCCCcEEEEE---CCcEEEechhhE
Confidence            47899998   899999985   467999998654

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=95.12  E-value=0.012  Score=42.79  Aligned_cols=29  Identities=21%  Similarity=0.716  Sum_probs=23.1

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|+++ |++||+++..  ++..|++|+...
T Consensus        31 ~i~v~~~-~~~Ww~g~~~--~g~~G~~P~~yv   59 (72)
T 2jw4_A           31 RLWLLDD-SKSWWRVRNS--MNKTGFVPSNYV   59 (72)
T ss_dssp             EEEEEEC-SSSSEEEECT--TSCEEEECTTSC
T ss_pred             EEEEEEC-CCCEEEEEEC--CCCEEEEEhhHE
Confidence            4788887 5699999854  478999999764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.11  E-value=0.011  Score=56.49  Aligned_cols=26  Identities=15%  Similarity=0.409  Sum_probs=22.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +..|+|+||+||||||+.+.|+...+
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccc
Confidence            34899999999999999999887653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.09  E-value=0.011  Score=50.12  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      --|+|+|++|||||||.++|...
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999999854

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.09  E-value=0.0094  Score=44.35  Aligned_cols=29  Identities=17%  Similarity=0.691  Sum_probs=24.6

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|++++|++||+++..   +..|++|+...
T Consensus        34 ~i~v~~~~~~~Ww~g~~~---g~~G~~P~~yv   62 (81)
T 2ysq_A           34 VIKVLDASNKDWWWGQID---DEEGWFPASFV   62 (81)
T ss_dssp             EEEEEECCSSSEEEEECS---SCEEEEEGGGE
T ss_pred             EEEEEEEcCcCEEEEEEC---CCEEEechHHE
Confidence            578999999999999853   67999998664

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.08  E-value=0.011  Score=55.94  Aligned_cols=26  Identities=19%  Similarity=0.317  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..++|+||+|||||||.+.|....
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            45689999999999999999998653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.07  E-value=0.011  Score=59.52  Aligned_cols=29  Identities=24%  Similarity=0.401  Sum_probs=24.6

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +..+..++|+||+|+|||||++.|....+
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            44567999999999999999999987653

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.07  E-value=0.0099  Score=58.31  Aligned_cols=25  Identities=24%  Similarity=0.535  Sum_probs=21.7

Q ss_pred             CCCE--EEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKT--LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~--ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .+..  ++|+||+|+|||||++.|...
T Consensus        39 ~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           39 QGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            4567  999999999999999999865

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=95.06  E-value=0.0081  Score=43.78  Aligned_cols=30  Identities=37%  Similarity=0.887  Sum_probs=23.6

Q ss_pred             CcEEEeCCCC-----CceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDH-----NWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~-----~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|++++|+     +||+++..  ++..|++||...
T Consensus        32 ~i~Vl~~~~~~~~~~gWW~g~~~--~G~~G~~PsnyV   66 (69)
T 1nm7_A           32 LMAILSKKDPLGRDSDWWKVRTK--NGNIGYIPYNYI   66 (69)
T ss_dssp             EEEECCSSSSSCCSSSCEEEEET--TTEEEEECGGGE
T ss_pred             EEEEEecCCCCCCCCCeeEEEeC--CCCEEEecHHHE
Confidence            4788888864     99999874  367999998653

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=95.06  E-value=0.014  Score=45.69  Aligned_cols=31  Identities=42%  Similarity=0.879  Sum_probs=25.9

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|++++|++||+++.. .++..|+||+...
T Consensus        51 ~i~v~~~~~~~Ww~g~~~-~~g~~G~~P~~yv   81 (109)
T 2yt6_A           51 RFQIINNTEGDWWEARSI-ATGKSGYIPSNYV   81 (109)
T ss_dssp             EEEEEECSCTTCEEEEES-SSCCEEEECTTTE
T ss_pred             EEEEEEccCCCcEEEEEC-CCCCEEEechHHc
Confidence            578999999999999874 2468999999765

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=95.06  E-value=0.013  Score=42.30  Aligned_cols=31  Identities=23%  Similarity=0.701  Sum_probs=25.0

Q ss_pred             CcEEEeCC-CCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKD-DHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~-D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|+|+.+. +++||.++... ++..|++|+...
T Consensus        30 ~i~v~~~~~~~~Ww~g~~~~-~g~~G~~P~~yv   61 (71)
T 2jt4_A           30 KVYILDDKKSKDWWMCQLVD-SGKSGLVPAQFI   61 (71)
T ss_dssp             EEEEEESSSCSSEEEEEETT-TCCEEEEEGGGE
T ss_pred             EEEEEECCCCCCCEEEEECC-CCCeEEechHHe
Confidence            47899987 89999998742 468999998664

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=95.05  E-value=0.016  Score=42.08  Aligned_cols=31  Identities=13%  Similarity=0.413  Sum_probs=24.7

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|.|+.++ ++||.++....++..|++|+...
T Consensus        35 ~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv   65 (74)
T 2m0y_A           35 TVHILETY-EGWYRGYTLRKKSKKGIFPASYI   65 (74)
T ss_dssp             EEEEEEBS-SSCEEEEESSCSSCCEEECGGGE
T ss_pred             EEEEEEcC-CCeEEEEECCCCCCEEEEehHHE
Confidence            47888886 78999998655678999998653

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.05  E-value=0.011  Score=44.72  Aligned_cols=29  Identities=28%  Similarity=0.755  Sum_probs=24.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||+|+++.|++||+++..   +..|++|+...
T Consensus        41 ~i~v~~~~~~~Ww~g~~~---g~~G~~P~~yv   69 (88)
T 1x2q_A           41 IIIVLDDSDANWWKGENH---RGIGLFPSNFV   69 (88)
T ss_dssp             EEEEEECSCSSSEEEEET---TEEEEECGGGE
T ss_pred             EEEEEEeCCCCEEEEEEC---CcEEEEehHHE
Confidence            578999999999999875   45899998764

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=95.04  E-value=0.0097  Score=43.66  Aligned_cols=29  Identities=21%  Similarity=0.652  Sum_probs=24.6

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|+.+.|.+||.++.   ++..|++|+...
T Consensus        34 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   62 (76)
T 1ujy_A           34 IIYVTRVEEGGWWEGTL---NGRTGWFPSNYV   62 (76)
T ss_dssp             CEEESSCCSSSCEEEEE---TTEEEEECTTTS
T ss_pred             EEEEEEecCCCEEEEEE---CCCEEEechHHE
Confidence            57899999999999986   468899999764

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=95.04  E-value=0.01  Score=42.50  Aligned_cols=29  Identities=24%  Similarity=0.636  Sum_probs=24.4

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +++|+.+.|++||.++.   ++..|++|+...
T Consensus        31 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   59 (68)
T 2djq_A           31 VILLRRQLDENWYQGEI---NGVSGIFPASSV   59 (68)
T ss_dssp             EEEEEECCCSSEEEEEE---TTEEEEEESSSE
T ss_pred             EEEEEEecCCCEEEEEE---CCcEEEeehHHE
Confidence            47899999999999985   468999998654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.03  E-value=0.0098  Score=49.46  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~  115 (330)
                      ..-|+|+|++|||||||.++|..
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            35799999999999999999874

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=95.03  E-value=0.0068  Score=43.59  Aligned_cols=29  Identities=24%  Similarity=0.889  Sum_probs=24.7

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |++|+.+.|++||.++..   +..|++|+...
T Consensus        32 ~i~v~~~~~~~Ww~g~~~---g~~G~~P~~yv   60 (69)
T 2dil_A           32 ILEVILEGEDGWWTVERN---GQRGFVPGSYL   60 (69)
T ss_dssp             EEEEEECCSSSEEEEEET---TEEEEEEGGGC
T ss_pred             EEEEEECCCCCEEEEEEC---CCEEEEehHHe
Confidence            578999999999999874   68999998664

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.02  E-value=0.0062  Score=44.83  Aligned_cols=29  Identities=24%  Similarity=0.512  Sum_probs=23.9

Q ss_pred             CcEEEeCCCC-CceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDH-NWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~-~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||+|+.+.|+ +||+++.   ++..|++|+...
T Consensus        38 ~i~v~~~~~~~gWw~g~~---~g~~G~~P~~yv   67 (76)
T 2csi_A           38 IITVFGEIDEDGFYYGEL---NGQKGLVPSNFL   67 (76)
T ss_dssp             EEEEESSCCSSSEEEEEE---TTEEEEEEGGGC
T ss_pred             EEEEeEecCCCCeEEEEE---CCcEEEEehHHE
Confidence            5789999875 7999986   468999999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	330
d1kgda_	178	c.37.1.1 (A:) Guanylate kinase-like domain of Cask	6e-35
d1kjwa2	199	c.37.1.1 (A:526-724) Guanylate kinase-like domain	3e-29
d1lvga_	190	c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu	3e-23
d1gkya_	186	c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac	2e-20
d1s96a_	205	c.37.1.1 (A:) Guanylate kinase {Escherichia coli [	8e-20
d1znwa1	182	c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu	7e-13
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	4e-08
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	2e-06
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	2e-06
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	4e-05
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	0.001

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 6e-35
 Identities = 124/173 (71%), Positives = 151/173 (87%)

Query: 93  RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMS 152
           RKTLVLLGAHGVGRRHIKNTLI K PD++AYP+PHTTR P+ DEENG+ YYF+SHD+MM 
Sbjct: 3   RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ 62

Query: 153 DIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIA 212
           DI+ N+YLEYG+HEDAMYGTKLETIR+IH++G IAILDVEPQALK+LRT EF+PFVVFIA
Sbjct: 63  DISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIA 122

Query: 213 APQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIE 265
           AP +    + D SL++L KESDIL+  Y H+FDLT++NN+I+ETI  LE+A+E
Sbjct: 123 APTITPGLNEDESLQRLQKESDILQRTYAHYFDLTIINNEIDETIRHLEEAVE 175

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 199

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  109 bits (272), Expect = 3e-29
 Identities = 53/197 (26%), Positives = 97/197 (49%), Gaps = 9/197 (4%)

Query: 85  VVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYF 144
           V ++     + +++LG     +    + L+++FPDK+   VPHTTR  R  E +GR Y+F
Sbjct: 1   VTQMEVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHF 57

Query: 145 ISHDEMMSDIAANQ-YLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGE 203
           +S  E M        ++E G +   +YGT ++++R + ++GK  ILDV   A++ L+   
Sbjct: 58  VSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAH 117

Query: 204 FSPFVVFIAAPQLQNLSDYDGSL-----EKLAKESDILKSAYEHFFDLTVVNNDIEETIG 258
             P  +FI    L+N+ + +  +      K    +  L+  +   F   V  +  EE   
Sbjct: 118 LHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYH 177

Query: 259 ILEKAIEELHTTPQWIP 275
            +++ IE+L     W+P
Sbjct: 178 KVKRVIEDLSGPYIWVP 194

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.7 bits (229), Expect = 3e-23
 Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 10/187 (5%)

Query: 96  LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
           +VL G  G G+  +   L  +    + + V HTTR+PR  EE+G+ YYF++ + M  DIA
Sbjct: 3   VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIA 62

Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAP- 214
           A  ++E+      +YGT  E +R +    +I +LDV+ Q ++ ++  +  P  +F+  P 
Sbjct: 63  AGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPS 122

Query: 215 --------QLQNLSDYDGSLEKLAK-ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIE 265
                   +L+N    +   ++LA   +D+  S     FDL ++N+D+++    L++A+ 
Sbjct: 123 LDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQALS 182

Query: 266 ELHTTPQ 272
           E     Q
Sbjct: 183 EEIKKAQ 189

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.4 bits (210), Expect = 2e-20
 Identities = 49/182 (26%), Positives = 94/182 (51%), Gaps = 10/182 (5%)

Query: 94  KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153
           + +V+ G  G G+  +   L  ++PD + + V  TTR+PR+ E NG+ Y F+S DE  S 
Sbjct: 2   RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61

Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILR-TGEFSPFVVFIA 212
           I  N+++E+       YG+ + +++++ + GK  ILD++ Q +K ++   E +   +FIA
Sbjct: 62  IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 121

Query: 213 APQLQNLSDY---------DGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKA 263
            P +++L            +   ++L+     L  A     D  +VN+D+++    L+  
Sbjct: 122 PPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDF 181

Query: 264 IE 265
           I 
Sbjct: 182 IF 183

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 83.7 bits (206), Expect = 8e-20
 Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 10/187 (5%)

Query: 96  LVLLGAHGVGRRHIKNTLINKFP-DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDI 154
            ++    G G+  +   L+   P       V HTTR PR  E +G  Y+F++HDE    I
Sbjct: 5   YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 64

Query: 155 AANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAP 214
           + + +LE+       YGT  E I ++   G    LD++ Q  + +R        +FI  P
Sbjct: 65  SRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPP 124

Query: 215 Q-------LQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAI--E 265
                   L+        +        + + ++   +D  +VN+D +  +  L+  I  E
Sbjct: 125 SKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLKTIIRAE 184

Query: 266 ELHTTPQ 272
            L  + Q
Sbjct: 185 RLRMSRQ 191

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 63.9 bits (154), Expect = 7e-13
 Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 10/180 (5%)

Query: 94  KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153
           + +VL G   VG+  +   L  + P+   + V  TTR+PR  E +G  Y+FI        
Sbjct: 3   RVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQL 61

Query: 154 IAANQYLEYGTHEDAMYGTKLET--IRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFI 211
           I   + LE+      ++ +      +R     G   +++V+    + ++        VF+
Sbjct: 62  IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFL 121

Query: 212 AAPQLQNLSDYDGSLEKLAKESDI--LKSA-----YEHFFDLTVVNNDIEETIGILEKAI 264
           A P  Q+L            +     L +A      +  FD  VVN  +E     L   +
Sbjct: 122 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLL 181

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 48.0 bits (114), Expect = 4e-08
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 3  QIISKDDHNWWQARKDNVAGSAGLIPSP-ELQEWRTA 38
           +  K +++WW  R        G IPSP +L+  R  
Sbjct: 54 HVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQ 90

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 11/46 (23%), Positives = 16/46 (34%)

Query: 1  MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTK 46
             I  K +++WW  R        G IPSP   E         + +
Sbjct: 54 FLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRKR 99

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 1  MFQIISKDDHNWWQARKDNVAGSAGLIPSP-ELQEWRTA 38
             I  K  ++WW  R     G    IPSP  L+  R  
Sbjct: 54 FLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIRLK 92

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 4e-05
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 1  MFQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWR 36
          +  +I   D  WWQAR+   D+     G IPS    E R
Sbjct: 30 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERR 68

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 1  MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW 35
          + +I  K +  WW A      G  G+IP P ++++
Sbjct: 25 ILRIRDKPEEQWWNAEDSE--GKRGMIPVPYVEKY 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	330
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	100.0
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	100.0
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	100.0
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	100.0
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	100.0
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	100.0
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	99.01
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	98.89
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	98.84
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.83
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.8
d1t0hb_	219	Guanylate kinase-like domain of the L-type calcium	98.78
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.73
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.72
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.72
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.68
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.66
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.64
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	98.6
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.59
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.58
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	98.48
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.44
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.42
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.41
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.38
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.37
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	98.37
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.34
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.27
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.25
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	98.25
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.24
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.23
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.23
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.21
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.17
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.11
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.1
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	98.04
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.98
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.97
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.95
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.87
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.86
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.86
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.83
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.81
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.78
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.76
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.67
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.65
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.62
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.61
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.53
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.5
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.49
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.47
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.43
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.4
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.39
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.37
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.36
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.34
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.33
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.31
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.27
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.25
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.24
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.19
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.18
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.17
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.17
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.16
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.15
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.14
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.1
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.05
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.99
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.96
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.93
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.92
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.92
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.91
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.89
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.88
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.88
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.86
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.86
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	96.85
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.83
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	96.81
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.78
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.77
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.76
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.72
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.7
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.7
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.68
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.68
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.66
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.66
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.65
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.65
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.64
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.62
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.6
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.54
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.52
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.52
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.5
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.45
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	96.44
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.42
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	96.4
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.38
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.38
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.38
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.38
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.34
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.33
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.33
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.32
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.32
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.3
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.3
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.29
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	96.29
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.28
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	96.27
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.27
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.26
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.25
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.25
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.23
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.22
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.22
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.2
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.17
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.14
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.09
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.07
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	96.06
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	95.98
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.98
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.96
d1okkd2	207	GTPase domain of the signal recognition particle r	95.93
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.92
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.92
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	95.92
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.9
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.9
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.87
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.84
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.83
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.82
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.81
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.8
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.8
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	95.78
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.75
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	95.74
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.73
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.72
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.69
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.69
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.69
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.67
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.65
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.65
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	95.65
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.62
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.61
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.6
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.6
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.57
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	95.56
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.55
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.55
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	95.54
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.53
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.52
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	95.51
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	95.51
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.5
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.46
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.42
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.41
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	95.39
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.3
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.29
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.25
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.22
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.22
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.21
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.19
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.18
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.14
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.11
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.11
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.1
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.09
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.07
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.06
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.05
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.04
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.04
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.02
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	95.02
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.99
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.94
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	94.89
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.84
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	94.84
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	94.83
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.8
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.74
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.72
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	94.66
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.57
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.54
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.52
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.45
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.44
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.44
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.43
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	94.41
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.39
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.33
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	94.31
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.29
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	94.24
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.23
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.19
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.07
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.03
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.77
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	93.74
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.74
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.69
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	93.62
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	93.56
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.5
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.44
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.43
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.42
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	93.41
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	93.04
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.03
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	93.02
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	92.89
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	92.89
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	92.86
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	92.84
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	92.76
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	92.64
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.6
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	92.56
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.51
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.49
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	92.45
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	92.44
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	92.35
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	92.06
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	91.89
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	91.83
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	91.7
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	91.61
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	91.46
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	91.44
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	91.39
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	91.35
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.1
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	90.85
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	90.71
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	90.54
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	90.3
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	90.23
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	90.22
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	90.04
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	90.02
d1tuea_	205	Replication protein E1 helicase domain {Human papi	89.11
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	88.37
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.29
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	88.26
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	87.65
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	87.21
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	87.04
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	86.63
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	86.23
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	85.82
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	85.36
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	85.0
d1xpua3	289	Transcription termination factor Rho, ATPase domai	84.79
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	84.6
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	84.46
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	84.3
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	84.16
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	83.26
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	81.78
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	81.04
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	80.81
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	80.14
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	80.12

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.1e-49  Score=351.64  Aligned_cols=190  Identities=29%  Similarity=0.569  Sum_probs=176.2

Q ss_pred             eecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEe-cccchhhHHhccceeeEE
Q psy933           85 VVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFI-SHDEMMSDIAANQYLEYG  163 (330)
Q Consensus        85 V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fv-s~~~f~~~i~~~~fle~~  163 (330)
                      |+++....+|||||+||+   |+|+.++|++.+|+.|..+++||||+||+||.+|+||||| ++++|++++..|.|+||+
T Consensus         1 v~~~~~~~~Rpivi~Gp~---K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~   77 (199)
T d1kjwa2           1 VTQMEVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAG   77 (199)
T ss_dssp             EEEEECCSCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEE
T ss_pred             CccccCCCCCCEEEECcC---HHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeee
Confidence            566766678999999994   9999999999999999999999999999999999999999 678899999999999999


Q ss_pred             eecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc-----CchHHHHHHHHHHHHHHh
Q psy933          164 THEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS-----DYDGSLEKLAKESDILKS  238 (330)
Q Consensus       164 ~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~-----~~~e~~~rl~~~~~~ie~  238 (330)
                      +++|++|||+.++|+.++++|++||++++++|+++|+..++.|++|||.|||.+.++     .+++++++..+.+.++++
T Consensus        78 ~~~g~~YGt~~~~i~~~~~~gk~~lldid~~g~~~lk~~~~~~i~IfI~pps~e~l~~l~kr~~~~~i~~r~~~~~~~e~  157 (199)
T d1kjwa2          78 QYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQ  157 (199)
T ss_dssp             EETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred             eecCCccceeeeEEEehhcCCCcccccccchHHhhhhhhccceeEEeeccccHHHHHhhhccccHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988664     356677776666777888


Q ss_pred             hccccceEEEecCCHHHHHHHHHHHHHHhcCCCcccccc
Q psy933          239 AYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS  277 (330)
Q Consensus       239 ~~~~~fD~vI~N~dle~a~~~L~~~i~~~~~~~~WvP~s  277 (330)
                      .+.++||++|+|+|+++|+++|.++|++++++|+|||+.
T Consensus       158 ~~~~~fd~vI~Nddle~a~~~l~~iI~~~~~~~~WvP~~  196 (199)
T d1kjwa2         158 EFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPAR  196 (199)
T ss_dssp             HHGGGCSEEECCSSHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred             HhhccCCEEEECcCHHHHHHHHHHHHHHhcCCCeeecCc
Confidence            899999999999999999999999999999999999974

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-48  Score=340.77  Aligned_cols=178  Identities=70%  Similarity=1.139  Sum_probs=166.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY  170 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y  170 (330)
                      +|+|||||+|||||||+||+++|++.+|+.|..+++||||+||+||.+|+||||||.++|+++++.|.|+||++++|++|
T Consensus         1 ~m~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fie~~~~~g~~Y   80 (178)
T d1kgda_           1 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMY   80 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCccceeeehhhhhhheecCceEEEeeecccce
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhhccccceEEEec
Q psy933          171 GTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVN  250 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~~~~~fD~vI~N  250 (330)
                      ||+++++++++++|++||++++++|+++|+.....|++|||.||+.++..+.++.++|+..+.+.++..+.++||++|+|
T Consensus        81 Gt~~~~i~~~~~~g~~~ildid~~g~~~lk~~~~~~~~IfI~pps~~~~~~~~~~~~r~~~~~~~~e~~~~~~fD~vIvN  160 (178)
T d1kgda_          81 GTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDILQRTYAHYFDLTIIN  160 (178)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTSCCSHHHHHHHHHHHHHHHHHGGGCSEEEEC
T ss_pred             eeeeecccchhccCceEEeccchhhhhhhhccccccceeeEeccccccccchHHHHHHHHHHHHHHHHHhhcCCCEEEEC
Confidence            99999999999999999999999999999999999999999999988777777888899888888888889999999999


Q ss_pred             CCHHHHHHHHHHHHHHhc
Q psy933          251 NDIEETIGILEKAIEELH  268 (330)
Q Consensus       251 ~dle~a~~~L~~~i~~~~  268 (330)
                      +|+++|+++|.++|+..+
T Consensus       161 ddle~a~~el~~iI~~~~  178 (178)
T d1kgda_         161 NEIDETIRHLEEAVELVC  178 (178)
T ss_dssp             SSHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhC
Confidence            999999999999998753

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.1e-45  Score=326.37  Aligned_cols=173  Identities=25%  Similarity=0.419  Sum_probs=157.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCC-CccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPD-KYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY  170 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~-~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y  170 (330)
                      ++++|||+|||||||+||+++|++.+|. .|..+||||||+||+||++|+||||||+++|++++.+|.|+||++++||+|
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~Y   80 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY   80 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCcee
Confidence            3689999999999999999999999995 588999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHH-HHHHHHHHHHHhhcc
Q psy933          171 GTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSL-EKLAKESDILKSAYE  241 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~-~rl~~~~~~ie~~~~  241 (330)
                      ||+.++|+.++++|++||++++++|+..|++..+.+++|||.|||.++|+        +.++.+ +|+..+..++  .+.
T Consensus        81 Gt~~~~v~~~~~~g~~~ildid~~g~~~lk~~~~~~~~ifi~pps~~~l~~RL~~Rg~~~~~~i~~Rl~~a~~E~--~~~  158 (205)
T d1s96a_          81 GTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEM--SHY  158 (205)
T ss_dssp             EEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHH--TTG
T ss_pred             ccccchHHHHHhcCCceeecCcHHHHHHHHhhhcccceeeeeccchHHHHHHHHhcCCchHHHHHHHHHHHHHHH--HHH
Confidence            99999999999999999999999999999999999999999999998774        234444 4566555544  567


Q ss_pred             ccceEEEecCCHHHHHHHHHHHHHH
Q psy933          242 HFFDLTVVNNDIEETIGILEKAIEE  266 (330)
Q Consensus       242 ~~fD~vI~N~dle~a~~~L~~~i~~  266 (330)
                      +.||++|+|+|+++|+++|.++|..
T Consensus       159 ~~fD~vIvNddl~~a~~el~~iI~~  183 (205)
T d1s96a_         159 AEYDYLIVNDDFDTALTDLKTIIRA  183 (205)
T ss_dssp             GGSSEEEECSSHHHHHHHHHHHHHH
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHHH
Confidence            8899999999999999999999964

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-42  Score=302.88  Aligned_cols=173  Identities=29%  Similarity=0.574  Sum_probs=161.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTK  173 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts  173 (330)
                      |||||+|||||||+||+++|++.+|+.|..+++||||+||+||.+|+||||||.++|+.++.+|.|+|+++++|++||++
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~   81 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST   81 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEEEeCHHHHHHHHhc-CCCCEEEEEccCcccccc--------CchHHH-HHHHHHHHHHHhhcccc
Q psy933          174 LETIRRIHQEGKIAILDVEPQALKILRTG-EFSPFVVFIAAPQLQNLS--------DYDGSL-EKLAKESDILKSAYEHF  243 (330)
Q Consensus       174 ~~~i~~v~~~gk~~vldv~~~~v~~L~~~-~~~p~vIfI~pps~~~l~--------~~~e~~-~rl~~~~~~ie~~~~~~  243 (330)
                      .++|..++.+|++||++++++|+..++.. +.+|++||+.||+.+.|+        +.++++ +||..+..++...+.+.
T Consensus        82 ~~~i~~~~~~g~~~i~~~~~~~~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg~~~~~~I~~Rl~~~~~e~~~~~~~~  161 (186)
T d1gkya_          82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGA  161 (186)
T ss_dssp             HHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hhhHHHHhcCCCeEEecchHHHHHHHHHhhcccceEEEecCCcHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhcC
Confidence            99999999999999999999999999985 678999999999998875        345566 57777777777778899


Q ss_pred             ceEEEecCCHHHHHHHHHHHHHH
Q psy933          244 FDLTVVNNDIEETIGILEKAIEE  266 (330)
Q Consensus       244 fD~vI~N~dle~a~~~L~~~i~~  266 (330)
                      ||+||+|+|++.|+++|.++|..
T Consensus       162 fd~vI~N~dle~a~~~l~~iI~~  184 (186)
T d1gkya_         162 HDKVIVNDDLDKAYKELKDFIFA  184 (186)
T ss_dssp             SSEEEECSSHHHHHHHHHHHHHT
T ss_pred             CCEEEECcCHHHHHHHHHHHHHh
Confidence            99999999999999999999874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-41  Score=297.04  Aligned_cols=175  Identities=30%  Similarity=0.628  Sum_probs=159.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTK  173 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts  173 (330)
                      |||||+|||||||+||+++|++.+|+.|..+++||||+||+||.+|++|||||.++|++++..|.|+++++++|++||++
T Consensus         1 rpIvl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~   80 (190)
T d1lvga_           1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTS   80 (190)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHHH-HHHHHHHHHH-hhcccc
Q psy933          174 LETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSLE-KLAKESDILK-SAYEHF  243 (330)
Q Consensus       174 ~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~~-rl~~~~~~ie-~~~~~~  243 (330)
                      .++|++++..|++|++++++.++..|+...+.|++||+.||+.+.|+        +.++.++ |+.+....|. ..+.++
T Consensus        81 ~~~v~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R~~~~~e~i~~rl~~~~~~~~~~~~~~~  160 (190)
T d1lvga_          81 KEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGL  160 (190)
T ss_dssp             HHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGSTTT
T ss_pred             cchhhhhhcCCCceeecchHhhhhhhhhccccceEEEEecchHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhhhcCC
Confidence            99999999999999999999999999999999999999999988875        3455564 5655555443 456788


Q ss_pred             ceEEEecCCHHHHHHHHHHHHHHhc
Q psy933          244 FDLTVVNNDIEETIGILEKAIEELH  268 (330)
Q Consensus       244 fD~vI~N~dle~a~~~L~~~i~~~~  268 (330)
                      ||++|+|+|+|+|+++|..+|.+..
T Consensus       161 fd~iI~N~dle~a~~~l~~iI~~~~  185 (190)
T d1lvga_         161 FDLVIINDDLDKAYATLKQALSEEI  185 (190)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987654

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=9e-40  Score=284.19  Aligned_cols=169  Identities=24%  Similarity=0.418  Sum_probs=154.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcc--c
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAM--Y  170 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~--Y  170 (330)
                      ++.|||+|||||||+||+++|++.+|. |..+++||||+||++|.+|+||||+|.++|++++..|.|+|++.+.+|+  |
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~-~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~   80 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRS   80 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTT-CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCC-CeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCcccc
Confidence            589999999999999999999999994 9999999999999999999999999999999999999999999999975  6


Q ss_pred             cccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHHH-HHHHHHHHHHhhcc
Q psy933          171 GTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSLE-KLAKESDILKSAYE  241 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~~-rl~~~~~~ie~~~~  241 (330)
                      |++..++..++..|++|+++++++|+..++...+.|++|||.|||.+.|+        +.+++++ ||..+.  ++..+.
T Consensus        81 g~~~~~~~~~~~~g~~~i~~~~~~g~~~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg~~~~e~I~~Rl~~~~--~e~~~~  158 (182)
T d1znwa1          81 GTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTAR--IELAAQ  158 (182)
T ss_dssp             EEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHH--HHHHGG
T ss_pred             ccccchhhhhhhcCCccccccccchhhhhhhcCcceeEEeeecccHHHHHHHhhhcCcchHHHHHHHHHHHH--HHHhhH
Confidence            99999999999999999999999999999999999999999999998875        3456664 454433  445678


Q ss_pred             ccceEEEecCCHHHHHHHHHHHH
Q psy933          242 HFFDLTVVNNDIEETIGILEKAI  264 (330)
Q Consensus       242 ~~fD~vI~N~dle~a~~~L~~~i  264 (330)
                      +.||++|+|+|+++|+++|.++|
T Consensus       159 ~~fD~vI~Nddle~a~~~l~~iI  181 (182)
T d1znwa1         159 GDFDKVVVNRRLESACAELVSLL  181 (182)
T ss_dssp             GGSSEEEECSSHHHHHHHHHHHH
T ss_pred             hcCCEEEECcCHHHHHHHHHHHh
Confidence            99999999999999999999886

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=9.8e-11  Score=96.04  Aligned_cols=37  Identities=30%  Similarity=0.569  Sum_probs=32.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhHHHHHH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT   37 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~~e~r~   37 (330)
                      ||||++++|++|||||+.++++.+|||||+.+.|.+.
T Consensus        54 il~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~lE~~r   90 (136)
T d1vyua1          54 FLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIR   90 (136)
T ss_dssp             EEEEEEECSSSEEEEEESSTTCCCEEEECHHHHHHHH
T ss_pred             EEEEEeccCCCcEEEEeccCCCceeccCchHHHhhhh
Confidence            7999999999999999987788899999998666543

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=3.1e-10  Score=98.55  Aligned_cols=48  Identities=21%  Similarity=0.411  Sum_probs=45.0

Q ss_pred             cccchhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHhcCCCceeec
Q psy933          279 LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPV  326 (330)
Q Consensus       279 ~~~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~~~~~qWvp~  326 (330)
                      ..+++.+++..|+|+||.+|+|||++.|+.+|.++|++++++|||||+
T Consensus       148 r~~~~~~~e~~~~~~fd~vI~Nddle~a~~~l~~iI~~~~~~~~WvP~  195 (199)
T d1kjwa2         148 AFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPA  195 (199)
T ss_dssp             HHHHHHHHHHHHGGGCSEEECCSSHHHHHHHHHHHHHHHSCSEEEEEC
T ss_pred             HHHHHHHHHHHhhccCCEEEECcCHHHHHHHHHHHHHHhcCCCeeecC
Confidence            356678899999999999999999999999999999999999999996

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=8.4e-10  Score=91.34  Aligned_cols=39  Identities=28%  Similarity=0.463  Sum_probs=34.1

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhHHHHHHhh
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTAC   39 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~~e~r~~~   39 (330)
                      ||||++++|++||||++.+.++..|||||..++|.....
T Consensus        54 ii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~~e~~~~~   92 (145)
T d1vyva1          54 FLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQ   92 (145)
T ss_dssp             EEEEEEEEETTEEEEEESSTTCCCEEEECHHHHHHHHHT
T ss_pred             EEEEeeccCCCcEEEEEcCCCCceeEeCCchhhhccccc
Confidence            799999999999999997778899999999888765543

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.83  E-value=6.1e-10  Score=92.14  Aligned_cols=151  Identities=15%  Similarity=0.137  Sum_probs=88.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEee----cC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTH----ED  167 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~----~g  167 (330)
                      .+++|+|+||+||||||+++.|.+.+.                     ..+.+++.+.+...+..+...++...    ..
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg---------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~   61 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPG---------------------VPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNR   61 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS---------------------SCEEEECTTHHHHTCCSSCCCTTSSSHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC---------------------CCEEEecHHHHHHHHhcCCcccccchhhhHHH
Confidence            357899999999999999999987643                     23455555555555544433322111    11


Q ss_pred             ccccccHHHHHHHHHhCCeEEEEeCH--HHHHHHHhcCCCCEEEEEccCcccccc----C-------chHHHHHHHHHHH
Q psy933          168 AMYGTKLETIRRIHQEGKIAILDVEP--QALKILRTGEFSPFVVFIAAPQLQNLS----D-------YDGSLEKLAKESD  234 (330)
Q Consensus       168 ~~YGts~~~i~~v~~~gk~~vldv~~--~~v~~L~~~~~~p~vIfI~pps~~~l~----~-------~~e~~~rl~~~~~  234 (330)
                      ..+......+...+..+..+|++--.  .-+..++......++||+.++. +.+.    +       ..+.+..+.+.  
T Consensus        62 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~l~~~~-e~~~~R~~~R~~~~~~~~~~~~~~~~~--  138 (176)
T d1zp6a1          62 MIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTA-AEAIERCLDRGGDSLSDPLVVADLHSQ--  138 (176)
T ss_dssp             HHHHHHHHHHHHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCH-HHHHHHHHTTCTTSCCCHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHhcCCCeEecccccHHHHHHHHhcccccccccCCCCH-HHHHHHHHhCCCccccchhhHHHHHHH--
Confidence            12333344556666778877776433  2244555555566678887653 3321    1       01112222222  


Q ss_pred             HHHhhccccceEEEecC--CHHHHHHHHHHHHHHhc
Q psy933          235 ILKSAYEHFFDLTVVNN--DIEETIGILEKAIEELH  268 (330)
Q Consensus       235 ~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~~~  268 (330)
                       + ..+..+.+++|+++  +++++.++|.+.|+.-.
T Consensus       139 -~-~~~~~~~~~~idt~~~~~ee~~~~I~~~l~~~~  172 (176)
T d1zp6a1         139 -F-ADLGAFEHHVLPVSGKDTDQALQSAINALQSGR  172 (176)
T ss_dssp             -T-TCCGGGGGGEEECTTCCTTTTTTTTHHHHHHTT
T ss_pred             -H-hhcccccCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence             1 23456667788765  78999999999887654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.80  E-value=2.2e-09  Score=87.88  Aligned_cols=153  Identities=9%  Similarity=-0.010  Sum_probs=75.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG  171 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG  171 (330)
                      |++.|+|+||+||||||++++|.+.++..+........+.-+.+...+.++      .              ......+.
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------~--------------~~~~~~~~   60 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWES------D--------------ELLALTWK   60 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGC------H--------------HHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHH------H--------------HHHHHHHH
Confidence            457899999999999999999999876422111111111111111111000      0              00011223


Q ss_pred             ccHHHHHHHHHhCCeEEEEeCH--HHHHHHH-----hcCCCC-EEEEEccCccccccC------ch-HHHHHHHHHHHHH
Q psy933          172 TKLETIRRIHQEGKIAILDVEP--QALKILR-----TGEFSP-FVVFIAAPQLQNLSD------YD-GSLEKLAKESDIL  236 (330)
Q Consensus       172 ts~~~i~~v~~~gk~~vldv~~--~~v~~L~-----~~~~~p-~vIfI~pps~~~l~~------~~-e~~~rl~~~~~~i  236 (330)
                      .....+...+..+..++++...  ...+.+.     .....+ ++||+.++ .+++.+      .+ ....+..+..+++
T Consensus        61 ~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~~  139 (176)
T d2bdta1          61 NITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTN-REELLRRDALRKKDEQMGERCLELVEEF  139 (176)
T ss_dssp             HHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECC-HHHHHHHTTTSCC----CGGGGHHHHHH
T ss_pred             HHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHhcCCCceEEEecccc-HHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence            3345667777889999987642  2222221     122223 45666654 444321      11 1111222222233


Q ss_pred             HhhccccceEEEecC--CHHHHHHHHHHHHHH
Q psy933          237 KSAYEHFFDLTVVNN--DIEETIGILEKAIEE  266 (330)
Q Consensus       237 e~~~~~~fD~vI~N~--dle~a~~~L~~~i~~  266 (330)
                      .. +...-+++|.|+  +.++..+.|++++..
T Consensus       140 ~~-~~~~~~~~id~~~~~~~~~~~~I~~i~~~  170 (176)
T d2bdta1         140 ES-KGIDERYFYNTSHLQPTNLNDIVKNLKTN  170 (176)
T ss_dssp             HH-TTCCTTSEEECSSSCGGGHHHHHHHHHHC
T ss_pred             Hh-CCCCCeEEEECCCCCHHHHHHHHHHHHhc
Confidence            22 233445567665  667777777777754

>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.78  E-value=4.3e-09  Score=89.40  Aligned_cols=89  Identities=17%  Similarity=0.281  Sum_probs=66.5

Q ss_pred             HHHhCCeEEEEeCH-HHHHHHHhcCCCCEEEEEccCccccccC---c--h---HHHHHHHHHHHHHHhhc-cccceEEEe
Q psy933          180 IHQEGKIAILDVEP-QALKILRTGEFSPFVVFIAAPQLQNLSD---Y--D---GSLEKLAKESDILKSAY-EHFFDLTVV  249 (330)
Q Consensus       180 v~~~gk~~vldv~~-~~v~~L~~~~~~p~vIfI~pps~~~l~~---~--~---e~~~rl~~~~~~ie~~~-~~~fD~vI~  249 (330)
                      ...+.+.||||.+. +--.+|.+..+.|++|||+..|.+.|..   +  .   ..+.-..-+++++.|.. +..||.|+.
T Consensus       103 lar~lqLvvLD~dtInhP~ql~ktsLaPIivyikiss~kVLqrLIKsrGksq~k~~nvq~vaa~kl~Qc~p~e~fD~iLd  182 (219)
T d1t0hb_         103 LARTLQLVVLDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPQESFDVILD  182 (219)
T ss_dssp             HHTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHHC------CHHHHHHHHHHHHTSCHHHHCSEEEC
T ss_pred             HhhcccEEEeccCccCCHHHhcccCCcceEEEEEeCcHHHHHHHHHhcChhhhhcccHHHHHHHHHhccCchhccceeec
Confidence            33578999999874 3345888889999999999988887752   1  1   11122233567777775 479999999


Q ss_pred             cCCHHHHHHHHHHHHHHhc
Q psy933          250 NNDIEETIGILEKAIEELH  268 (330)
Q Consensus       250 N~dle~a~~~L~~~i~~~~  268 (330)
                      .+.+++||+.|.+.++.+-
T Consensus       183 en~Le~Acehla~yLE~Yw  201 (219)
T d1t0hb_         183 ENQLEDACEHLADYLEAYW  201 (219)
T ss_dssp             CSSHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHH
Confidence            9999999999999998763

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1.4e-08  Score=83.62  Aligned_cols=28  Identities=18%  Similarity=0.474  Sum_probs=24.6

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+++|+|+||+||||||+++.|.+...
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3568999999999999999999998753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.72  E-value=4.6e-09  Score=87.37  Aligned_cols=142  Identities=16%  Similarity=0.254  Sum_probs=74.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCc-cccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDA-MYGT  172 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~-~YGt  172 (330)
                      |.|+|+||+||||||+++.|++.+.                       |.|+|.+.+-+....-..-+.....|. .+-.
T Consensus         1 k~I~liG~~GsGKsTi~k~La~~l~-----------------------~~~~d~d~~ie~~~g~~i~~~~~~~g~~~~r~   57 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALAKDLD-----------------------LVFLDSDFLIEQKFNQKVSEIFEQKRENFFRE   57 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT-----------------------CEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhC-----------------------CCEEecCchhhhHHhhhhhhHHHhhhhccchh
Confidence            3589999999999999999998752                       234443322110000000001001111 1111


Q ss_pred             cHHHHHHHHHhCCeEEEEeCHHHH--HHHHhcCCCCEEEEEccCcc---ccccC----------chHHHHHHHHHHHHHH
Q psy933          173 KLETIRRIHQEGKIAILDVEPQAL--KILRTGEFSPFVVFIAAPQL---QNLSD----------YDGSLEKLAKESDILK  237 (330)
Q Consensus       173 s~~~i~~v~~~gk~~vldv~~~~v--~~L~~~~~~p~vIfI~pps~---~~l~~----------~~e~~~rl~~~~~~ie  237 (330)
                      .-..+...+.....+|+......+  ..++.   .-++|||.+|.-   +++..          .+..++++.++...+ 
T Consensus        58 ~e~~v~~~l~~~~~~v~~~~g~~~~~~~l~~---~~~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l~~~r~~~-  133 (161)
T d1viaa_          58 QEQKMADFFSSCEKACIATGGGFVNVSNLEK---AGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSK-  133 (161)
T ss_dssp             HHHHHHHHHTTCCSEEEECCTTGGGSTTGGG---GCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHH-
T ss_pred             hhhhhchhhhhccccccccccchhhHHHHHh---CCeEEEeccchHHHHHHHccccccccccccCchHHHHHHHHHHHH-
Confidence            112333444445555555543222  22222   246899988743   22211          122345665554433 


Q ss_pred             hhccccceEEEecC--CHHHHHHHHHHHH
Q psy933          238 SAYEHFFDLTVVNN--DIEETIGILEKAI  264 (330)
Q Consensus       238 ~~~~~~fD~vI~N~--dle~a~~~L~~~i  264 (330)
                        |....|++|..+  ++++++++|.++|
T Consensus       134 --Y~~~ad~~Idt~~~s~eei~~~I~~~i  160 (161)
T d1viaa_         134 --YEQKANFILNIENKNIDELLSEIKKVI  160 (161)
T ss_dssp             --HHHHCSEEEECTTCCHHHHHHHHHHHH
T ss_pred             --HHhhCCEEEECCCCCHHHHHHHHHHHh
Confidence              556678888754  8999999988876

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.72  E-value=2.1e-08  Score=82.22  Aligned_cols=156  Identities=13%  Similarity=0.104  Sum_probs=76.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGT  172 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGt  172 (330)
                      .|.|+|.|||||||||+++.|.+.++..+...-..+-+........+.       ..... ...+....-.....+.|..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~   74 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSA-------EGGIE-FDADGGVSIGPEFRALEGA   74 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTS-------TTSEE-ECTTSCEEECHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhccccccccch-------hHHhh-hhcccchhHHHHHHHHHHH
Confidence            478999999999999999999999875432110001010000000000       00000 0001111111111234444


Q ss_pred             cHHHHHHHHHhCCeEEEEeCH---HHHH-HHH--hcCCCCEEEEEccCccccccCchHHHHHHHHHH--------HHHH-
Q psy933          173 KLETIRRIHQEGKIAILDVEP---QALK-ILR--TGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKES--------DILK-  237 (330)
Q Consensus       173 s~~~i~~v~~~gk~~vldv~~---~~v~-~L~--~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~--------~~ie-  237 (330)
                      ..+.+....+.+..++++...   .... .+.  ......++|||.+|. +.+      .+|+....        ...+ 
T Consensus        75 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~-e~~------~~R~~~R~~~~~~~~~~~~~~  147 (178)
T d1qhxa_          75 WAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDG-AVA------EGRETARGDRVAGMAAKQAYV  147 (178)
T ss_dssp             HHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCH-HHH------HHHHHHTSSSCTTHHHHHTTG
T ss_pred             HHHHHHHHHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCH-HHH------HHHHHhcCCcchhhhhhhhhh
Confidence            455556667778888876642   2221 111  234556678998763 222      12222110        0001 


Q ss_pred             hhccccceEEEecC--CHHHHHHHHHHH
Q psy933          238 SAYEHFFDLTVVNN--DIEETIGILEKA  263 (330)
Q Consensus       238 ~~~~~~fD~vI~N~--dle~a~~~L~~~  263 (330)
                      ......+|++|.+.  +.+++.++|.+.
T Consensus       148 ~~~~~~~dl~IDts~~s~ee~a~~I~~~  175 (178)
T d1qhxa_         148 VHEGVEYDVEVDTTHKESIECAWAIAAH  175 (178)
T ss_dssp             GGTTCCCSEEEETTSSCHHHHHHHHHTT
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHh
Confidence            11234589999876  789998888743

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.68  E-value=2.1e-08  Score=81.08  Aligned_cols=27  Identities=26%  Similarity=0.517  Sum_probs=24.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      |++.|+|+||||||||||+++|++..+
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~~~~   27 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIAKNP   27 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            567899999999999999999988765

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=4.1e-09  Score=85.12  Aligned_cols=26  Identities=23%  Similarity=0.583  Sum_probs=23.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +|.|+|+||+|||||||++.|++.+.
T Consensus         2 ~k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           2 KRNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            47899999999999999999998864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.64  E-value=2.2e-08  Score=83.53  Aligned_cols=26  Identities=19%  Similarity=0.451  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      |.++|+|+||+||||||+++.|++..
T Consensus         1 M~~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           1 MTEPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999999875

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.60  E-value=1.3e-08  Score=78.20  Aligned_cols=36  Identities=28%  Similarity=0.524  Sum_probs=31.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhHHHHH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR   36 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~~e~r   36 (330)
                      ||+|++++|++||+|+..+.++.+|||||..+.|.+
T Consensus        52 ii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~~e~~   87 (96)
T d1t0ha_          52 FLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENM   87 (96)
T ss_dssp             EEEEEEECSSSEEEEEESSTTCCCEEEECHHHHHHH
T ss_pred             EEEEeeeeCCCceEEEEcCCCCCEEEecCcHHHHHH
Confidence            689999999999999998778899999998765543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.59  E-value=1.1e-08  Score=83.92  Aligned_cols=31  Identities=13%  Similarity=0.168  Sum_probs=24.0

Q ss_pred             hhccccceEEEecCCHHHHHHHHHHHHHHhc
Q psy933          238 SAYEHFFDLTVVNNDIEETIGILEKAIEELH  268 (330)
Q Consensus       238 ~~~~~~fD~vI~N~dle~a~~~L~~~i~~~~  268 (330)
                      ..|...+++++.|++++++.+.+.++++.+.
T Consensus       135 ~~~~~~~~i~~~~~~~~~~~~~i~~Ii~~i~  165 (173)
T d1rkba_         135 ASYKEEIVHQLPSNKPEELENNVDQILKWIE  165 (173)
T ss_dssp             HHSCGGGEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccEEEECCCCHHHHHHHHHHHHHHHH
Confidence            3466778889999998888888888877653

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.58  E-value=5.7e-08  Score=79.86  Aligned_cols=25  Identities=12%  Similarity=0.437  Sum_probs=22.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      -.|+|+||+||||||+++.|.+.+.
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            3599999999999999999998864

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=4.5e-08  Score=84.21  Aligned_cols=164  Identities=13%  Similarity=0.170  Sum_probs=84.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE--------
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG--------  163 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~--------  163 (330)
                      +++.|||-|+.||||||++++|.+.+.. .+....++||+|..... |        +.+......+.+....        
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~-~g~~~~~~~~ep~~~~~-g--------~~i~~~~~~~~~~~~~~~~~~~~~   70 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQL-A--------EKLRSLLLDIKSVGDEVITDKAEV   70 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHH-H--------HHHHHHHHSTTTTTTCCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh-CCCCeEEEecCCCCccc-h--------hhhHHHHhccccccccccchHHHH
Confidence            4689999999999999999999876532 33344456787743211 0        1111111111111000        


Q ss_pred             -eecCccccccHHHHHHHHHhCCeEEEEeCH---------------HHHHHHHhc---CC-CCEEEEEccCcccc---cc
Q psy933          164 -THEDAMYGTKLETIRRIHQEGKIAILDVEP---------------QALKILRTG---EF-SPFVVFIAAPQLQN---LS  220 (330)
Q Consensus       164 -~~~g~~YGts~~~i~~v~~~gk~~vldv~~---------------~~v~~L~~~---~~-~p~vIfI~pps~~~---l~  220 (330)
                       -+..+.+-.....|+..+.+|.++|+|=-.               .-+..+...   .+ ...+||+..|.-..   ++
T Consensus        71 ~l~~~~~~~~~~~~i~~~l~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~  150 (210)
T d4tmka_          71 LMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRAR  150 (210)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhh
Confidence             001111222334456677788888887332               222222221   12 34578888763221   11


Q ss_pred             ---C-------chHHHHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933          221 ---D-------YDGSLEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       221 ---~-------~~e~~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                         +       ..+-++++.+...++-..+.. + .+|.++ ++|+..++|..+|++.
T Consensus       151 ~R~~~~~~~~~~~~~~~~v~~~y~~~~~~~~~-~-~~IDa~~~~e~v~~~I~~~i~~~  206 (210)
T d4tmka_         151 ARGELDRIEQESFDFFNRTRARYLELAAQDKS-I-HTIDATQPLEAVMDAIRTTVTHW  206 (210)
T ss_dssp             HHSSCCTTTTSCHHHHHHHHHHHHHHHHTCTT-E-EEEETTSCHHHHHHHHHHHHHHH
T ss_pred             hccccchhhhccHHHHHHHHHHHHHHHhcCCC-E-EEEECCCCHHHHHHHHHHHHHHH
Confidence               0       112234444443333222222 2 455545 8999999999988765

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.2e-07  Score=77.60  Aligned_cols=28  Identities=25%  Similarity=0.419  Sum_probs=24.0

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++++..|.|+|+||||||||++.|.+.+
T Consensus        16 ~~~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          16 GFRGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             SCCCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456788899999999999999998764

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.42  E-value=3.8e-07  Score=76.96  Aligned_cols=26  Identities=23%  Similarity=0.509  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++..|+|+||+||||||++++|++.+
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            44578999999999999999999876

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.41  E-value=6.4e-08  Score=80.18  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      -|||+|++||||||+++.|.+...
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            377889999999999999988753

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.38  E-value=5.2e-08  Score=80.04  Aligned_cols=29  Identities=31%  Similarity=0.504  Sum_probs=25.5

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      +..|.|+|+||+|||||||+++|.+.+..
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~~~~~   33 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAAVFNT   33 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34578999999999999999999998753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.37  E-value=6.2e-07  Score=73.64  Aligned_cols=25  Identities=24%  Similarity=0.448  Sum_probs=22.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      |.|+|.||+||||||++++|.+.+.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            7899999999999999999988653

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=1.6e-06  Score=75.03  Aligned_cols=163  Identities=16%  Similarity=0.176  Sum_probs=79.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcccee--eEE---eec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYL--EYG---THE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fl--e~~---~~~  166 (330)
                      +++.|+|-|+-||||||+++.|.+.+....    ..++.|+.... -|        +.....+..+.+-  ...   -|.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~----~~~~~p~~~~~-~g--------~~ir~~l~~~~~~~~~~~~~llf~   68 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNC----KLLKFPERSTR-IG--------GLINEYLTDDSFQLSDQAIHLLFS   68 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSE----EEEESSCTTSH-HH--------HHHHHHHHCTTCCCCHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCC----EEEEECCCCch-Hh--------HhHHHhhhhccccccchHHHHHHH
Confidence            578999999999999999999998765322    12333332211 11        0011111111100  000   000


Q ss_pred             CccccccHHHHHHHHHhCCeEEEEeCHHH--------------HHHHHh---cCCCC-EEEEEccCcccccc--------
Q psy933          167 DAMYGTKLETIRRIHQEGKIAILDVEPQA--------------LKILRT---GEFSP-FVVFIAAPQLQNLS--------  220 (330)
Q Consensus       167 g~~YGts~~~i~~v~~~gk~~vldv~~~~--------------v~~L~~---~~~~p-~vIfI~pps~~~l~--------  220 (330)
                      .+.+. ....|...+..|+++|.|=-..+              +..+..   ..++| ++||+..|..+.+.        
T Consensus        69 a~r~~-~~~~i~~~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~~  147 (214)
T d1tmka_          69 ANRWE-IVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDE  147 (214)
T ss_dssp             HHHHT-THHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCSS
T ss_pred             HHHHH-HHHHHHHHHhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccchh
Confidence            11111 12457777889999999844322              111111   12355 78899765433332        


Q ss_pred             --CchHHHHHHHHHHHHHHhhccccc--e-EEEec--CCHHHHHHHHHHHHHHhc
Q psy933          221 --DYDGSLEKLAKESDILKSAYEHFF--D-LTVVN--NDIEETIGILEKAIEELH  268 (330)
Q Consensus       221 --~~~e~~~rl~~~~~~ie~~~~~~f--D-~vI~N--~dle~a~~~L~~~i~~~~  268 (330)
                        +..+-++++.+...++-..+...+  . .+|.+  .+.++..++|..+|+++-
T Consensus       148 ~~e~~~~~~~v~~~Y~~l~~~~~~~~~~~~~iID~s~~~~eev~~~I~~~v~~~l  202 (214)
T d1tmka_         148 RYETVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVL  202 (214)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhhCCCcEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence              111223444444333322222222  2 33442  378999999999888764

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=2.9e-07  Score=70.27  Aligned_cols=39  Identities=33%  Similarity=0.662  Sum_probs=33.2

Q ss_pred             CcEEEeCCCCCceeEEeCC---CCCCceeeCChhHHHHHHhh
Q psy933            1 MFQIISKDDHNWWQARKDN---VAGSAGLIPSPELQEWRTAC   39 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~---~~~~~GlIPS~~~~e~r~~~   39 (330)
                      ||+|+++.|++||+|++.+   .+++.|+|||..++|++...
T Consensus        30 il~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~~~~~   71 (96)
T d1kjwa1          30 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWS   71 (96)
T ss_dssp             EEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHHHHHT
T ss_pred             EEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeeehhhh
Confidence            6899999999999999843   46789999999999876543

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.27  E-value=1e-06  Score=74.11  Aligned_cols=160  Identities=16%  Similarity=0.215  Sum_probs=74.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTK  173 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts  173 (330)
                      ..|+|+||+||||||++++|.+.+.-.+ ..+...-|....   .+.    -....+...+..|.++.-..    .....
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~~~~~-is~~~~~~~~~~---~~~----~~~~~~~~~~~~g~~~~~~~----~~~~~   71 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKYQLAH-ISAGDLLRAEIA---AGS----ENGKRAKEFMEKGQLVPDEI----VVNMV   71 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHCCEE-CCHHHHHHHHHH---HTC----HHHHHHHHHHHTTCCCCHHH----HHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHCCcE-EehhHHHHHhhh---ccc----HHHHHHHHHHhcCCccccee----ehhhh
Confidence            3588999999999999999998763111 000000000000   000    00011222233333321110    00011


Q ss_pred             HHHHHHHHHhCCeEEEEeCHHH---HHHHHhcCCCC-EEEEEccCcccccc------CchHHHH-HHHHHH---HHHHhh
Q psy933          174 LETIRRIHQEGKIAILDVEPQA---LKILRTGEFSP-FVVFIAAPQLQNLS------DYDGSLE-KLAKES---DILKSA  239 (330)
Q Consensus       174 ~~~i~~v~~~gk~~vldv~~~~---v~~L~~~~~~p-~vIfI~pps~~~l~------~~~e~~~-rl~~~~---~~ie~~  239 (330)
                      ...+......++..+++--|..   +..+......| .+||+..|. +.+.      ..++.++ |+..-.   ..+...
T Consensus        72 ~~~~~~~~~~~~~~vid~~~~~~~q~~~l~~~~~~p~~~i~L~~~~-e~l~~R~~~~~~~e~~~~rl~~y~~~~~~l~~~  150 (189)
T d1zaka1          72 KERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPD-ELLVERVVFDDTEEKVKLRLETYYQNIESLLST  150 (189)
T ss_dssp             HHHHHSHHHHHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCH-HHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHhhhcccccCcEEeeccchhhHHHhhhhhcccccchheeechhh-hhhhhhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            1111222223345667665544   34444455555 578887753 3332      2233332 333222   223223


Q ss_pred             ccccceEEEec-CCHHHHHHHHHHHHHHh
Q psy933          240 YEHFFDLTVVN-NDIEETIGILEKAIEEL  267 (330)
Q Consensus       240 ~~~~fD~vI~N-~dle~a~~~L~~~i~~~  267 (330)
                      |.. .-++|.+ .++++.++++.++|..+
T Consensus       151 y~~-~~~~Id~~~~idev~~~I~~~l~~i  178 (189)
T d1zaka1         151 YEN-IIVKVQGDATVDAVFAKIDELLGSI  178 (189)
T ss_dssp             TCC-CEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             hCC-CEEEEECCCCHHHHHHHHHHHHHHH
Confidence            332 2245553 49999999999998766

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=6.3e-07  Score=75.18  Aligned_cols=84  Identities=13%  Similarity=0.163  Sum_probs=56.8

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY  170 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y  170 (330)
                      ..+..|+|+|++||||||++++|+...                       +|.+++.+++...                 
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~-----------------------~~~~i~~D~~~~~-----------------   51 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSA-----------------------GYVHVNRDTLGSW-----------------   51 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGG-----------------------TCEEEEHHHHCSH-----------------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc-----------------------CCEEEchHHHHHH-----------------
Confidence            345799999999999999999997542                       1345555554321                 


Q ss_pred             cccHHHHHHHHHhCCeEEEEeCH---HHH----HHHHhcCCCCEEEEEccC
Q psy933          171 GTKLETIRRIHQEGKIAILDVEP---QAL----KILRTGEFSPFVVFIAAP  214 (330)
Q Consensus       171 Gts~~~i~~v~~~gk~~vldv~~---~~v----~~L~~~~~~p~vIfI~pp  214 (330)
                      .--...++..+.+|+.+|+|-..   ...    ...+..+....+|++.+|
T Consensus        52 ~~~~~~~~~~l~~g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~  102 (172)
T d1yj5a2          52 QRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT  102 (172)
T ss_dssp             HHHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             HHHHHHHHHHHHCCCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            11246677888999999998753   222    223445666778888775

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.7e-06  Score=74.66  Aligned_cols=162  Identities=15%  Similarity=0.165  Sum_probs=81.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccce-eeEE----eec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQY-LEYG----THE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~f-le~~----~~~  166 (330)
                      +++.|+|.|+.||||||+++.|.+.+... +..+ .+|+-|..+..-|         ++-.....+.. +...    -+.
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~-g~~v-~~~~~p~~~~~~~---------~~i~~~l~~~~~~~~~~~~~l~~   70 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA-ELLRFPERSTEIG---------KLLSSYLQKKSDVEDHSVHLLFS   70 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE-EEEESSCTTSHHH---------HHHHHHHTTSSCCCHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHC-CCcE-EEEeCCCCCcccc---------hhhhhhhhcccccchhhhhhHHH
Confidence            46799999999999999999998765321 2222 3445443221000         00000000100 0000    000


Q ss_pred             CccccccHHHHHHHHHhCCeEEEEeCHHHH------------HHHH---hcCCCC-EEEEEccCcccccc---------C
Q psy933          167 DAMYGTKLETIRRIHQEGKIAILDVEPQAL------------KILR---TGEFSP-FVVFIAAPQLQNLS---------D  221 (330)
Q Consensus       167 g~~YGts~~~i~~v~~~gk~~vldv~~~~v------------~~L~---~~~~~p-~vIfI~pps~~~l~---------~  221 (330)
                      ...+. ....|...+.+|+++|+|=-..+-            ..+.   ...+.| ++||+..|.-..++         +
T Consensus        71 ~~r~~-~~~~i~~~l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~~~~E  149 (209)
T d1nn5a_          71 ANRWE-QVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYE  149 (209)
T ss_dssp             HHHHT-THHHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTC
T ss_pred             HHHHH-HHHhHHHHhhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhcccccccc
Confidence            11112 135677788899999988543211            1111   112334 67888876322221         1


Q ss_pred             chHHHHHHHHHHHHHHhhccccceE-EEecC-CHHHHHHHHHHHHHHh
Q psy933          222 YDGSLEKLAKESDILKSAYEHFFDL-TVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       222 ~~e~~~rl~~~~~~ie~~~~~~fD~-vI~N~-dle~a~~~L~~~i~~~  267 (330)
                      ..+-++++.+...++...+..  .+ +|.++ +.++..++|..+++..
T Consensus       150 ~~~~~~r~~~~Y~~l~~~~~~--~~~~IDa~~~~e~V~~~I~~~v~~~  195 (209)
T d1nn5a_         150 NGAFQERALRCFHQLMKDTTL--NWKMVDASKSIEAVHEDIRVLSEDA  195 (209)
T ss_dssp             SHHHHHHHHHHHHHHTTCTTS--CEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhCCC--CEEEEECCCCHHHHHHHHHHHHHHH
Confidence            111234444443444322222  33 44444 8999999999988776

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.24  E-value=1.8e-06  Score=73.19  Aligned_cols=153  Identities=16%  Similarity=0.207  Sum_probs=77.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccc-hh--------------hHHhccc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDE-MM--------------SDIAANQ  158 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~-f~--------------~~i~~~~  158 (330)
                      -.|+|+||+||||||++++|++.+.                       +.++|..+ +.              ..+..|.
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~g-----------------------~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~   63 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHFE-----------------------LKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGK   63 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHBC-----------------------CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHHC-----------------------CeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhh
Confidence            4688899999999999999998752                       22333322 21              2222222


Q ss_pred             eeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHH---HHHHhcCCCCEEEEEccCcccccc----CchHHH-HHHH
Q psy933          159 YLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQAL---KILRTGEFSPFVVFIAAPQLQNLS----DYDGSL-EKLA  230 (330)
Q Consensus       159 fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v---~~L~~~~~~p~vIfI~pps~~~l~----~~~e~~-~rl~  230 (330)
                      .+.-    .-....-...+..  ..+...|+|--|...   +.|.....-..+|++..|. +.+.    +..+.+ +|+.
T Consensus        64 ~v~~----~~~~~l~~~~~~~--~~~~~~ildGfPr~~~q~~~l~~~~~~~~vi~L~v~~-~~l~~R~~~r~e~~~kr~~  136 (189)
T d2ak3a1          64 LIPD----DVMTRLVLHELKN--LTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPF-EVIKQRLTDRPETVVKRLK  136 (189)
T ss_dssp             CCCH----HHHHHHHHHHHHH--HTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCH-HHHHHHHTGSHHHHHHHHH
T ss_pred             hccc----hhhhhhhhhhhhh--hhhcCcccccccchhhHHHHhhhcCcceEEEEEeccc-hhhhhhcccchHHHHHHHH
Confidence            2110    0001111111111  123446777555443   3443322234678888863 3332    233333 3333


Q ss_pred             H---HHHHHHhhccccceE-EEecCCHHHHHHHHHHHHHH-hcCCCccccc
Q psy933          231 K---ESDILKSAYEHFFDL-TVVNNDIEETIGILEKAIEE-LHTTPQWIPV  276 (330)
Q Consensus       231 ~---~~~~ie~~~~~~fD~-vI~N~dle~a~~~L~~~i~~-~~~~~~WvP~  276 (330)
                      .   ....+...|...-.+ +|.+++.++.+++|..+|+. +....++.|+
T Consensus       137 ~y~~~~~~v~~~Y~~~~~l~~idg~~~~eV~~~I~~~i~~~l~~~~~~~~~  187 (189)
T d2ak3a1         137 AYEAQTEPVLEYYRKKGVLETFSGTETNKIWPHVYAFLQTKLPQRSQETSV  187 (189)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEECSSHHHHHHHHHHHHHTTSCBCSCCCCS
T ss_pred             HHHHHHHHHHHHHHhcCCEEEECCCChHHHHHHHHHHHHHHhhccccCCCC
Confidence            2   222233334433233 34455899999999999864 4446666554

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=6.4e-07  Score=76.72  Aligned_cols=24  Identities=8%  Similarity=0.253  Sum_probs=21.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|.|.||+|||||||++.|.+.+.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            677999999999999999998864

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=7.7e-06  Score=68.78  Aligned_cols=28  Identities=18%  Similarity=0.414  Sum_probs=24.6

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      |...+.|+|+||+||||||++++|.+.+
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3445789999999999999999999876

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.21  E-value=7.1e-07  Score=73.66  Aligned_cols=26  Identities=19%  Similarity=0.362  Sum_probs=23.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      |.|||.|++||||||+++.|.+.++.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999887654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.17  E-value=1.3e-05  Score=67.09  Aligned_cols=25  Identities=32%  Similarity=0.488  Sum_probs=21.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +..|||+||+||||||++++|++.+
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467789999999999999999875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.7e-05  Score=66.34  Aligned_cols=24  Identities=21%  Similarity=0.504  Sum_probs=21.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..|+|+||+||||||++++|++.+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999876

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.10  E-value=7.2e-06  Score=69.02  Aligned_cols=26  Identities=19%  Similarity=0.489  Sum_probs=23.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +++|+|+||+||||+|++++|++.+.
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            47899999999999999999999863

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.04  E-value=1.1e-06  Score=75.97  Aligned_cols=156  Identities=13%  Similarity=0.178  Sum_probs=81.4

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecC-c
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHED-A  168 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g-~  168 (330)
                      ..++.+|.|+|.||||||||++.|.+......                 |.....++-+.+...+..+.  .|..... .
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~-----------------~~~~~~ldgD~iR~~l~~~l--~ys~~~r~~   81 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDR-----------------RVHAYRLDGDNIRFGLNKDL--GFSEADRNE   81 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHH-----------------CCCEEEECHHHHTTTTTTTC--CSSHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhc-----------------CceEEEEcchHHHHhhcCCC--CCChhHHHH
Confidence            44567999999999999999999986542111                 11223344455544332220  0110000 0


Q ss_pred             cccccHHHHHHHHHhCCeEEEEeC-H-H-HHHHHHh----------cCCCCEEEEEccCccccccCchHHHHHHHHHHHH
Q psy933          169 MYGTKLETIRRIHQEGKIAILDVE-P-Q-ALKILRT----------GEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDI  235 (330)
Q Consensus       169 ~YGts~~~i~~v~~~gk~~vldv~-~-~-~v~~L~~----------~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~  235 (330)
                      .+..-.........+|..++++.. + . .-...+.          .....+.|||.+| .+.+...+.  ++++.....
T Consensus        82 ~~~r~~~~a~~~~~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~-le~~~~Rd~--k~~y~~~~~  158 (208)
T d1m7ga_          82 NIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVP-VEVAEQRDP--KGLYKKARE  158 (208)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECC-HHHHHTSCT--TCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCC-HHHHHHhhc--ccchhhhhc
Confidence            011111222445567888887654 2 2 2222222          1223456999986 344332211  123332221


Q ss_pred             H--------Hhhc--cccceEEEecC--CHHHHHHHHHHHHHHh
Q psy933          236 L--------KSAY--EHFFDLTVVNN--DIEETIGILEKAIEEL  267 (330)
Q Consensus       236 i--------e~~~--~~~fD~vI~N~--dle~a~~~L~~~i~~~  267 (330)
                      -        ...|  +...|.+|.++  ++++++++|.+.|.+-
T Consensus       159 ~~~~~~~gvd~~ye~P~~~dl~Idt~~~s~~e~~~~Ii~~L~~~  202 (208)
T d1m7ga_         159 GVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTK  202 (208)
T ss_dssp             TSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHHT
T ss_pred             CcccceecccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            1        1122  34578999776  8999999999888764

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.98  E-value=1.7e-05  Score=65.80  Aligned_cols=24  Identities=25%  Similarity=0.635  Sum_probs=21.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|+||+||||||++++|++.+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            488999999999999999998863

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.97  E-value=4.1e-08  Score=83.04  Aligned_cols=28  Identities=18%  Similarity=0.214  Sum_probs=24.0

Q ss_pred             cccceEEEecC-CHHHHHHHHHHHHHHhc
Q psy933          241 EHFFDLTVVNN-DIEETIGILEKAIEELH  268 (330)
Q Consensus       241 ~~~fD~vI~N~-dle~a~~~L~~~i~~~~  268 (330)
                      ..++|++|.|+ ++++...+|..+++++.
T Consensus       162 ~~~aD~vI~N~~s~~~l~~~v~~il~~l~  190 (191)
T d1uf9a_         162 RKRATWVLENTGSLEDLERALKAVLAELT  190 (191)
T ss_dssp             HHHCSEEECCSSHHHHHHHHHHHHHHSCC
T ss_pred             HHhCCEEEECCCCHHHHHHHHHHHHHHcc
Confidence            35689999988 89999999999998764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=1.4e-05  Score=66.04  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=21.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|+||+||||||++++|.+.+.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478899999999999999998763

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.91  E-value=2e-06  Score=70.04  Aligned_cols=27  Identities=22%  Similarity=0.268  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ++.+|.|+|+||||||||++.|.+...
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456788999999999999999998754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.87  E-value=2.2e-05  Score=64.93  Aligned_cols=55  Identities=31%  Similarity=0.587  Sum_probs=34.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM  150 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f  150 (330)
                      -|+|+|.+|||||||+++|..... ......+.||+.+..+  ..+|..+..++...+
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~   66 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL   66 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETTEEEEESSCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc-ceeecccccccccceeeeccCCceeeeeccCCc
Confidence            589999999999999999986542 2345556778776654  346666666655443

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.86  E-value=2.1e-06  Score=73.55  Aligned_cols=27  Identities=19%  Similarity=0.348  Sum_probs=22.4

Q ss_pred             cccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933          241 EHFFDLTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       241 ~~~fD~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                      .+..|+||.|+ +++++.++|.+.|.++
T Consensus       166 ~~~aD~vI~N~~~l~~~~~~l~~~i~~i  193 (205)
T d1jjva_         166 LKWADDVINNDAELAQNLPHLQQKVLEL  193 (205)
T ss_dssp             HHHCSEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             HHhCCEEEECCCChHHHHHHHHHHHHHH
Confidence            46789999999 8999888888777665

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.86  E-value=3.2e-05  Score=63.56  Aligned_cols=22  Identities=27%  Similarity=0.640  Sum_probs=20.7

Q ss_pred             EEEEcCCCccHHHHHHHHHhhC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      |+|+||+||||||+++.|++.+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8899999999999999999876

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.83  E-value=3.7e-05  Score=63.81  Aligned_cols=23  Identities=30%  Similarity=0.628  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+|+||+||||||+++.|++.+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999999875

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.81  E-value=8.3e-06  Score=71.45  Aligned_cols=93  Identities=18%  Similarity=0.237  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccc-------cccccCCCCcccCCeeEEEecccch--------hhHHhc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPV-------PHTTRSPRSDEENGRAYYFISHDEM--------MSDIAA  156 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v-------~~TTR~pr~~E~~G~dy~fvs~~~f--------~~~i~~  156 (330)
                      .++..+|+|+||||||||+|.|....- .-...|       .|||+....-..++- -+.+|..-|        +...-.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~-~~T~~vs~~~~rGrHTTt~~~l~~l~~g-g~iiDTPG~r~~~l~~~~~~~l~  171 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFG-GYVVDTPGFANLEINDIEPEELK  171 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTS-CEEESSCSSTTCCCCSSCHHHHG
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhh-hhccCcccccCCCCccccceeEEEECCC-cEEEeCCccccccccccCcchhh
Confidence            468999999999999999999975432 223333       399998777665321 123333222        222223


Q ss_pred             cceeeEEe----ecCc-cccccHHHHHHHHHhCCe
Q psy933          157 NQYLEYGT----HEDA-MYGTKLETIRRIHQEGKI  186 (330)
Q Consensus       157 ~~fle~~~----~~g~-~YGts~~~i~~v~~~gk~  186 (330)
                      ..|.|+..    |.+- +-+-+-++|++++++|.+
T Consensus       172 ~~F~e~~~~~CkF~dC~H~~EpgCaVk~av~~g~i  206 (225)
T d1u0la2         172 HYFKEFGDKQCFFSDCNHVDEPECGVKEAVENGEI  206 (225)
T ss_dssp             GGSTTSSSCCCSSTTCCSSSCSSCHHHHHHHHTSS
T ss_pred             hhhhhHHhCCCCCCCCCCCCCCCCHHHHHHHcCCC
Confidence            44555432    2221 336777889999999974

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.78  E-value=7e-05  Score=61.45  Aligned_cols=49  Identities=22%  Similarity=0.181  Sum_probs=33.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISH  147 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~  147 (330)
                      .|+|+|++|||||||.++|.....  -....|.|||.....+  +.++.+++.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~--~~~~~~g~T~~~~~~~--~~~~~ivDt   50 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKV--RRGKRPGVTRKIIEIE--WKNHKIIDM   50 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCC--SSSSSTTCTTSCEEEE--ETTEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc--eeeCCCCEeecccccc--cccceeccc
Confidence            589999999999999999986543  2345677888754332  223445543

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.76  E-value=4.9e-05  Score=62.81  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=21.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+|+||+||||||++++|.+.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999999886

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.67  E-value=4.6e-06  Score=73.40  Aligned_cols=92  Identities=15%  Similarity=0.253  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCcccccc-------ccccCCCCcccCCeeEEEecccchh--------hHHhc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP-------HTTRSPRSDEENGRAYYFISHDEMM--------SDIAA  156 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~-------~TTR~pr~~E~~G~dy~fvs~~~f~--------~~i~~  156 (330)
                      .++..+|+|+||||||||+|.|+...- .-...|+       ||||....-..+|-  ..+|..-|.        ..--.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~-~~t~~vs~~~~rGrHTTt~~~l~~~~gg--~iiDTPG~r~~~l~~~~~~~l~  172 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTSGG--LVADTPGFSSLEFTDIEEEELG  172 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETTE--EEESSCSCSSCCCTTCCHHHHG
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhH-hhhcccccccCCCceeeeeEEEEecCCC--EEEECCccccccccccCcccch
Confidence            457899999999999999999986532 2233444       99987655444442  333433222        22224


Q ss_pred             cceeeEEeecCc-------cccccHHHHHHHHHhCCe
Q psy933          157 NQYLEYGTHEDA-------MYGTKLETIRRIHQEGKI  186 (330)
Q Consensus       157 ~~fle~~~~~g~-------~YGts~~~i~~v~~~gk~  186 (330)
                      ..|.|..++.++       +-+-+-++|++++++|++
T Consensus       173 ~~F~ei~~~~~~CkF~dC~H~~EpgCaV~~av~~g~i  209 (231)
T d1t9ha2         173 YTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGEL  209 (231)
T ss_dssp             GGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSS
T ss_pred             hhhhhHHHHhCCCCCCCCCCCCCCCchHHHHHHcCCC
Confidence            446655544332       235677889999988874

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=3.5e-06  Score=74.69  Aligned_cols=64  Identities=11%  Similarity=0.248  Sum_probs=44.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~  166 (330)
                      .+..|+|+||||+|||||++.|...++             |..|+  ++|.+....+.+.+.+.+   .+..++..++..
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~-------------p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~   94 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFYI-------------PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII   94 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC-------------CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC-------------CCCCEEEECCEEecccchhhhhceEEEEecccccCCcccc
Confidence            467999999999999999998887654             34454  488877666666665432   345555555555


Q ss_pred             Cc
Q psy933          167 DA  168 (330)
Q Consensus       167 g~  168 (330)
                      .|
T Consensus        95 eN   96 (241)
T d2pmka1          95 DN   96 (241)
T ss_dssp             HH
T ss_pred             cc
Confidence            55

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.3e-05  Score=67.20  Aligned_cols=38  Identities=58%  Similarity=0.933  Sum_probs=34.3

Q ss_pred             cchhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHhc
Q psy933          281 KESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELH  318 (330)
Q Consensus       281 ~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~~  318 (330)
                      +++..++..++|+||.+|+||||+.|+.+|+++|+.++
T Consensus       141 ~~~~~~e~~~~~~fD~vIvNddle~a~~el~~iI~~~~  178 (178)
T d1kgda_         141 KESDILQRTYAHYFDLTIINNEIDETIRHLEEAVELVC  178 (178)
T ss_dssp             HHHHHHHHHHGGGCSEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhcCCCEEEECCCHHHHHHHHHHHHHHhC
Confidence            45677889999999999999999999999999998764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.61  E-value=8.2e-05  Score=61.44  Aligned_cols=52  Identities=19%  Similarity=0.284  Sum_probs=33.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc---cCCeeEEEeccc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE---ENGRAYYFISHD  148 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E---~~G~dy~fvs~~  148 (330)
                      -|+|+|++|||||||.++|.....  ....-+.||+.+..+-   .+|..+.+++..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~--~~~~~~~~T~~~~~~~~~~~~~~~~~~~Dtp   57 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLP   57 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECC--EESSTTSSCCCCCEEEEECSSSCEEEEEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCC--ceecCCCceEeeeeceeEecCCcEEEEecCC
Confidence            389999999999999999987643  2233445565554431   134445555443

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.53  E-value=1.1e-05  Score=71.70  Aligned_cols=47  Identities=17%  Similarity=0.267  Sum_probs=33.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMM  151 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~  151 (330)
                      .+..++|+||||||||||++.|+..++             |..|++  +|.+..-++...+.
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~~-------------p~~G~I~i~g~~i~~~~~~~~r   88 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFYD-------------IDEGHILMDGHDLREYTLASLR   88 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTC-------------CSEEEEEETTEETTTBCHHHHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccC-------------CCccEEEECCcccchhhhhhhh
Confidence            567999999999999999998876553             444543  77765555544443

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.00053  Score=55.48  Aligned_cols=32  Identities=28%  Similarity=0.330  Sum_probs=25.5

Q ss_pred             ecccCCCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           86 VKLPSFKRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        86 ~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .++|.....-|+|+|+++||||||.++|....
T Consensus         9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_           9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             hHCCCccCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34555556789999999999999999997653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.49  E-value=1.7e-05  Score=70.03  Aligned_cols=64  Identities=20%  Similarity=0.283  Sum_probs=42.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhh---HHhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMS---DIAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~---~i~~~~fle~~~~~  166 (330)
                      .+..++|+||||||||||++.|...++             |..|++  +|.+..-++...+.+   .+.++.++.-++..
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~   93 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFYQ-------------PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIR   93 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC-------------CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhC-------------CCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchh
Confidence            467999999999999999998876653             344543  666654444444433   23455555556665


Q ss_pred             Cc
Q psy933          167 DA  168 (330)
Q Consensus       167 g~  168 (330)
                      .|
T Consensus        94 eN   95 (242)
T d1mv5a_          94 EN   95 (242)
T ss_dssp             HH
T ss_pred             hh
Confidence            55

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.47  E-value=0.00023  Score=58.37  Aligned_cols=22  Identities=14%  Similarity=0.305  Sum_probs=20.0

Q ss_pred             EEEEcCCCccHHHHHHHHHhhC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      |+|+|.+|||||||.++|....
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999997654

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00093  Score=56.68  Aligned_cols=27  Identities=22%  Similarity=0.281  Sum_probs=24.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      .|.|+|-|+.||||||+++.|.+.+..
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            478999999999999999999998864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.40  E-value=0.00013  Score=60.80  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=21.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -.|+|+|+||||||||+++|.+..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            368999999999999999999764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.39  E-value=0.00034  Score=58.11  Aligned_cols=24  Identities=33%  Similarity=0.556  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -+.|+|+|++|||||||.+.|...
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCC
Confidence            357999999999999999999853

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=5.2e-05  Score=61.00  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=22.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      -+.|+|+|++|||||||+++|++...
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            36899999999999999999997643

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.36  E-value=8.7e-06  Score=72.64  Aligned_cols=67  Identities=16%  Similarity=0.269  Sum_probs=42.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhhH---HhccceeeEEeec
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMSD---IAANQYLEYGTHE  166 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~~---i~~~~fle~~~~~  166 (330)
                      .+..++|+||||||||||++.|...++             |..|++  +|.+..-++.+.+.+.   +.+..++..++..
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~-------------p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~  109 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFYD-------------VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVK  109 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSC-------------CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcCC-------------ccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHH
Confidence            467999999999999999997776554             344543  7766555555544432   2345555555555


Q ss_pred             Cc-ccc
Q psy933          167 DA-MYG  171 (330)
Q Consensus       167 g~-~YG  171 (330)
                      .| .+|
T Consensus       110 eNi~~g  115 (255)
T d2hyda1         110 ENILLG  115 (255)
T ss_dssp             HHHGGG
T ss_pred             HHHhcc
Confidence            55 254

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=4.8e-05  Score=64.90  Aligned_cols=27  Identities=11%  Similarity=-0.007  Sum_probs=22.2

Q ss_pred             cccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933          241 EHFFDLTVVNN-DIEETIGILEKAIEEL  267 (330)
Q Consensus       241 ~~~fD~vI~N~-dle~a~~~L~~~i~~~  267 (330)
                      ....|+||.|+ ++++...++..+++++
T Consensus       167 ~~~aD~vI~N~~~le~l~~~v~~l~~~~  194 (208)
T d1vhta_         167 LAVADDVIDNNGAPDAIASDVARLHAHY  194 (208)
T ss_dssp             HHHCSEEEECSSCTTSHHHHHHHHHHHH
T ss_pred             HHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence            35789999998 8888888888877665

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.33  E-value=3.9e-05  Score=62.76  Aligned_cols=42  Identities=26%  Similarity=0.373  Sum_probs=23.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE  137 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~  137 (330)
                      .|+|+|++|||||||.++|..... ......++||+.+-.+..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~-~~~~~~~~~t~~~~~~~~   43 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTV   43 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc-ceecccCceeeccccccc
Confidence            689999999999999999986543 234567788887655544

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.31  E-value=0.0016  Score=53.53  Aligned_cols=121  Identities=12%  Similarity=0.110  Sum_probs=68.7

Q ss_pred             ccccccHHHHHHHHHhCCeEEE----------EeCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHH
Q psy933          168 AMYGTKLETIRRIHQEGKIAIL----------DVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILK  237 (330)
Q Consensus       168 ~~YGts~~~i~~v~~~gk~~vl----------dv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie  237 (330)
                      ++|..+.+..++....|....-          ......+...-..+. +.++-+.+                 +....+.
T Consensus        49 dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~g~~~~~~~~~~~~g~-~~i~~~~~-----------------~g~~~l~  110 (182)
T d1znwa1          49 DYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGV-PVLIEVDL-----------------AGARAIK  110 (182)
T ss_dssp             TBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTC-CEEEECCH-----------------HHHHHHH
T ss_pred             ceeeccchhhhhhhcccccchhhhcccCccccccccchhhhhhhcCC-cccccccc-----------------chhhhhh
Confidence            4788999999999988877433          223344444444443 22222221                 1112222


Q ss_pred             hhccccceEEEecCCHHHHHHHHHHHHHHhcCCCccccccccc--cchhhhhhhccceeeEEEEcCCHHHHHHHHHHHH
Q psy933          238 SAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWLA--KESDILKSAYEHFFDLTVVNNDIEETIGILEKAI  314 (330)
Q Consensus       238 ~~~~~~fD~vI~N~dle~a~~~L~~~i~~~~~~~~WvP~sw~~--~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~  314 (330)
                      ..+...+...|.-.+.+...+.|..   +-...     ..-+.  -.+..+|..|.|+||.||+||||++|+.+|.++|
T Consensus       111 ~~~~~~~~i~i~~~s~e~L~~RL~~---Rg~~~-----~e~I~~Rl~~~~~e~~~~~~fD~vI~Nddle~a~~~l~~iI  181 (182)
T d1znwa1         111 KTMPEAVTVFLAPPSWQDLQARLIG---RGTET-----ADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLL  181 (182)
T ss_dssp             HHCTTSEEEEEECSCHHHHHHHHHT---TSCSC-----HHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred             hcCcceeEEeeecccHHHHHHHhhh---cCcch-----HHHHHHHHHHHHHHHhhHhcCCEEEECcCHHHHHHHHHHHh
Confidence            2344444444434477665544432   11100     01111  1344578889999999999999999999999876

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.27  E-value=5.1e-05  Score=61.85  Aligned_cols=27  Identities=15%  Similarity=0.541  Sum_probs=23.2

Q ss_pred             EEEEcCCCccHHHHHHHHHhhCCCCcc
Q psy933           96 LVLLGAHGVGRRHIKNTLINKFPDKYA  122 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~p~~f~  122 (330)
                      |+|+||+|+|||||++.|+...+...+
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~~g   29 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKRAI   29 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCCcc
Confidence            889999999999999999988764433

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.00066  Score=56.70  Aligned_cols=32  Identities=28%  Similarity=0.506  Sum_probs=28.2

Q ss_pred             hhhhccceeeEEEEcCCHHHHHHHHHHHHHHh
Q psy933          286 LKSAYEHFFDLTVVNNDIEETIGILEKAIEEL  317 (330)
Q Consensus       286 ~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~  317 (330)
                      ....++|+||.+|+|+|++.|+++|..+|.+.
T Consensus       153 ~~~~~~~~fd~iI~N~dle~a~~~l~~iI~~~  184 (190)
T d1lvga_         153 ESSKEPGLFDLVIINDDLDKAYATLKQALSEE  184 (190)
T ss_dssp             TGGGSTTTCSEEEECSSHHHHHHHHHHHTHHH
T ss_pred             HhhhhcCCCCEEEECcCHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999987664

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=5e-05  Score=67.36  Aligned_cols=48  Identities=19%  Similarity=0.371  Sum_probs=34.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMS  152 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~  152 (330)
                      ++..++|+||||||||||++.|...++             |..|+  ++|.+..-.+...+.+
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~~-------------p~~G~I~i~g~~i~~~~~~~~r~   88 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLYQ-------------PTGGQLLLDGKPLPQYEHRYLHR   88 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC-------------CSEEEEEETTEEGGGBCHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccC-------------CCcCEEEECCEecchhhhHHHHH
Confidence            567999999999999999998876653             44554  4777655555444443

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.0044  Score=51.10  Aligned_cols=126  Identities=13%  Similarity=0.078  Sum_probs=70.9

Q ss_pred             ccccccHHHHHHHHHhCCeEEEE--------eCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhh
Q psy933          168 AMYGTKLETIRRIHQEGKIAILD--------VEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSA  239 (330)
Q Consensus       168 ~~YGts~~~i~~v~~~gk~~vld--------v~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~  239 (330)
                      ++|-.+.+..+..+++|+...-.        .....+..+-..+.  .+|+.-  +.              .....+...
T Consensus        49 dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~~~i~~~~~~g~--~~i~~~--~~--------------~~~~~lk~~  110 (186)
T d1gkya_          49 DYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGK--TCILDI--DM--------------QGVKSVKAI  110 (186)
T ss_dssp             TEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHHTS--EEEEEC--CH--------------HHHHHHHTC
T ss_pred             cceeccHHHHHHHHhcccceeeeEEccceeecchhhHHHHhcCCC--eEEecc--hH--------------HHHHHHHHh
Confidence            46778999999999999875432        34555555444433  233321  11              111222222


Q ss_pred             ccccceEEE-ecCCHHHHHHHHHHHHHHhcCCCccccccccccchhhhhhhccceeeEEEEcCCHHHHHHHHHHHHH
Q psy933          240 YEHFFDLTV-VNNDIEETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIE  315 (330)
Q Consensus       240 ~~~~fD~vI-~N~dle~a~~~L~~~i~~~~~~~~WvP~sw~~~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~  315 (330)
                      ++.....++ ...+.+...+.|..-   -...+.=+ ..-+......|+..++|+||.||+|+|++.|+.+|.++|.
T Consensus       111 ~~~~~~~i~~~~~~~e~l~~RL~~R---g~~~~~~I-~~Rl~~~~~e~~~~~~~~fd~vI~N~dle~a~~~l~~iI~  183 (186)
T d1gkya_         111 PELNARFLFIAPPSVEDLKKRLEGR---GTETEESI-NKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDFIF  183 (186)
T ss_dssp             GGGCCEEEEEECSCHHHHHHHHHHH---SCSCHHHH-HHHHHHHHHHHHHHTTTCSSEEEECSSHHHHHHHHHHHHH
T ss_pred             hcccceEEEecCCcHHHHHHHHHhh---ccchhHHH-HHHHHHHHHHHHhhhhcCCCEEEECcCHHHHHHHHHHHHH
Confidence            222222333 334666655555331   11000000 0122344566778899999999999999999999999885

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=8.5e-05  Score=62.49  Aligned_cols=25  Identities=12%  Similarity=0.371  Sum_probs=22.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+.|+|.||+||||+|++++|++.+
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3578888999999999999999987

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.17  E-value=0.00018  Score=59.04  Aligned_cols=51  Identities=25%  Similarity=0.383  Sum_probs=34.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEec
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFIS  146 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs  146 (330)
                      .|+|+|.+|||||||+++|..... ......+.||+....+  ...|..+.+++
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~-~~~~~~~~tt~~~~~~~~~~~~~~~~~~D   59 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKV-APISPRPQTTRKRLRGILTEGRRQIVFVD   59 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc-eeecccCCcccccccceeeeeeeeeeecc
Confidence            799999999999999999997643 2334566677765443  23444455444

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=7.9e-05  Score=62.28  Aligned_cols=36  Identities=11%  Similarity=0.256  Sum_probs=27.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD  135 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~  135 (330)
                      +.|+|+|++|||||||.++|....   +   .+.||+....+
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~---~---~~~tt~~~~~~   39 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDS---V---RPTVVSQEPLS   39 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS---C---CCBCCCSSCEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC---C---CCeEEecceEE
Confidence            589999999999999999998753   2   24566654433

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.16  E-value=7.8e-05  Score=65.28  Aligned_cols=48  Identities=17%  Similarity=0.215  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccch
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEM  150 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f  150 (330)
                      -..+..++|+||||||||||++.|....+             |..|++  +|.+..-.+..++
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~-------------p~sG~I~~~g~~i~~~~~~~~   77 (230)
T d1l2ta_          28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK-------------PTEGEVYIDNIKTNDLDDDEL   77 (230)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSC-------------CSEEEEEETTEECTTCCHHHH
T ss_pred             EcCCCEEEEECCCCCCcchhhHhccCCCC-------------CCcceeEECCEEcCcCChhhc
Confidence            34568999999999999999997765432             445543  6666554444443

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.15  E-value=7e-05  Score=61.64  Aligned_cols=26  Identities=19%  Similarity=0.289  Sum_probs=22.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      -+|.|.||+|||||||+++|.+.+..
T Consensus        23 ~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          23 LVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            35669999999999999999887553

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.14  E-value=0.00017  Score=57.03  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999865

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00017  Score=57.82  Aligned_cols=37  Identities=22%  Similarity=0.324  Sum_probs=28.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSP  132 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~p  132 (330)
                      .|+|+|++|||||||.++|..... ......+.||+..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~~-~~~~~~~~~~~~~   39 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDV   39 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSCC-SCCCSSTTCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc-eEeecccccccce
Confidence            488999999999999999997654 2344556666653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.00011  Score=58.99  Aligned_cols=50  Identities=28%  Similarity=0.454  Sum_probs=36.7

Q ss_pred             EEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEec
Q psy933           96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFIS  146 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs  146 (330)
                      |+|+|.+|||||||.++|..... .+....+.||+.+.....  +|..+.+++
T Consensus         3 I~liG~~n~GKSSLin~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   54 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRIVD   54 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCCEEEEETTEEEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCCCc-eeeeccccccccceeEEEEeCCeeEEecc
Confidence            89999999999999999987753 356677888887765533  444444443

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00011  Score=62.88  Aligned_cols=128  Identities=10%  Similarity=0.081  Sum_probs=71.3

Q ss_pred             ccccccHHHHHHHHHhCCeEEEE--------eCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhh
Q psy933          168 AMYGTKLETIRRIHQEGKIAILD--------VEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSA  239 (330)
Q Consensus       168 ~~YGts~~~i~~v~~~gk~~vld--------v~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~  239 (330)
                      +||=.+.+..++.+++|+.+--.        .+...+......+. .+++-+.+                 +....+.+.
T Consensus        51 dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YGt~~~~v~~~~~~g~-~~ildid~-----------------~g~~~lk~~  112 (205)
T d1s96a_          51 HYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGV-DVFLDIDW-----------------QGAQQIRQK  112 (205)
T ss_dssp             TBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHTTTC-EEEEECCH-----------------HHHHHHHHH
T ss_pred             cceeecHHHHHHHhhhhhheeEEEECCceeccccchHHHHHhcCC-ceeecCcH-----------------HHHHHHHhh
Confidence            47779999999999999865321        12333443333322 22221221                 112223333


Q ss_pred             ccccceEEEecCCHHHHHHHHHHHHHHhcCCCccccccccccchhhhhhhccceeeEEEEcCCHHHHHHHHHHHH--HHh
Q psy933          240 YEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAI--EEL  317 (330)
Q Consensus       240 ~~~~fD~vI~N~dle~a~~~L~~~i~~~~~~~~WvP~sw~~~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~--~~~  317 (330)
                      +...+-..|.-.+.++..+.|..   +-.....=   --.+-.+...|..++|.||.||+|||++.|+.+|.++|  +++
T Consensus       113 ~~~~~~ifi~pps~~~l~~RL~~---Rg~~~~~~---i~~Rl~~a~~E~~~~~~fD~vIvNddl~~a~~el~~iI~~e~~  186 (205)
T d1s96a_         113 MPHARSIFILPPSKIELDRRLRG---RGQDSEEV---IAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLKTIIRAERL  186 (205)
T ss_dssp             CTTCEEEEEECSSHHHHHHHHHT---TSCSCHHH---HHHHHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             hcccceeeeeccchHHHHHHHHh---cCCchHHH---HHHHHHHHHHHHHHHhCCCEEEECcCHHHHHHHHHHHHHHHHh
Confidence            44444444445566655444431   11000000   01123445668889999999999999999999999999  455


Q ss_pred             cC
Q psy933          318 HT  319 (330)
Q Consensus       318 ~~  319 (330)
                      ..
T Consensus       187 k~  188 (205)
T d1s96a_         187 RM  188 (205)
T ss_dssp             BH
T ss_pred             hh
Confidence            43

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.99  E-value=0.0012  Score=53.14  Aligned_cols=21  Identities=24%  Similarity=0.637  Sum_probs=19.5

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+++|.+|||||||+++|...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999875

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00018  Score=63.19  Aligned_cols=47  Identities=17%  Similarity=0.253  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccch
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEM  150 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f  150 (330)
                      ..+..++|+||||||||||++.|....+             |..|++  +|.+..-.+..++
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~-------------p~sG~I~~~g~~i~~~~~~~~   77 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLER-------------PTEGSVLVDGQELTTLSESEL   77 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSSC-------------CSEEEEEETTEEECTTCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCcc-------------ccCCceEEcCeEeeeCChhhh
Confidence            4568999999999999999998865432             445553  7766554444433

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.011  Score=47.73  Aligned_cols=22  Identities=32%  Similarity=0.637  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||+|+++|+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999999864

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.92  E-value=0.00023  Score=61.49  Aligned_cols=27  Identities=15%  Similarity=0.416  Sum_probs=23.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      ++-|+|.||+|+|||+|++.|+.....
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~~~   58 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEETQG   58 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            467999999999999999999988643

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.92  E-value=0.00038  Score=61.28  Aligned_cols=55  Identities=20%  Similarity=0.326  Sum_probs=40.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCcc-ccccccccCCCCc--ccCCeeEEEecccch
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYA-YPVPHTTRSPRSD--EENGRAYYFISHDEM  150 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~-~~v~~TTR~pr~~--E~~G~dy~fvs~~~f  150 (330)
                      -.|+|+|.+|||||||.|.|+...  .|. ...+-|||.+..+  ..+|..+.+++..-|
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~~--~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl   90 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGER--VVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGL   90 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC--CSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCS
T ss_pred             cEEEEECCCCCcHHHHHHHHhCCC--ceeecCCCCcceeEEEEEEEeccEEEEEEeeecc
Confidence            369999999999999999999764  232 3456677765444  567888888876654

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.91  E-value=0.00023  Score=60.62  Aligned_cols=27  Identities=19%  Similarity=0.422  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....+
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccc
Confidence            567999999999999999999987654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.00056  Score=53.72  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+|+|++|||||||+++|....
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999998753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.001  Score=58.67  Aligned_cols=25  Identities=16%  Similarity=0.456  Sum_probs=22.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++-++|.||+|+|||+|++.|++..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHc
Confidence            4779999999999999999999764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00024  Score=57.08  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=22.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      |.|+|+||+|+|||||++.+++...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            6799999999999999999987753

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.86  E-value=0.00036  Score=61.23  Aligned_cols=28  Identities=25%  Similarity=0.306  Sum_probs=23.9

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..++|+||||||||||.+.|....+
T Consensus        30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          30 KDGEFLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            3567999999999999999998887543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.86  E-value=0.00044  Score=60.71  Aligned_cols=26  Identities=19%  Similarity=0.359  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..+.|+||||||||||++.|....
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            46799999999999999999887654

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=96.85  E-value=9.8e-05  Score=49.66  Aligned_cols=30  Identities=23%  Similarity=0.706  Sum_probs=24.4

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|.|+++.|++||.++.  .+++.|+||+...
T Consensus        22 ~~~vl~~~~~~Ww~~~~--~~g~~G~vP~~yv   51 (53)
T d2rn8a1          22 EYYLLDSSEIHWWRVQD--KNGHEGYAPSSYL   51 (53)
T ss_dssp             EEEECCCSCSSCEEEEC--TTSCEEEECGGGE
T ss_pred             EEEEeEEcCCCeEEEEe--CCCCEEEEeHHHE
Confidence            47899999999999963  3567899999754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.026  Score=45.05  Aligned_cols=22  Identities=32%  Similarity=0.632  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||+|+++++..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999864

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.00012  Score=50.07  Aligned_cols=31  Identities=32%  Similarity=0.879  Sum_probs=25.4

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhHH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQ   33 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~~   33 (330)
                      |+.|++++|++||+++..  ++..|+||+...+
T Consensus        25 ~i~v~~~~~~~Ww~~~~~--~g~~G~vP~~yve   55 (57)
T d1ckaa_          25 ILRIRDKPEEQWWNAEDS--EGKRGMIPVPYVE   55 (57)
T ss_dssp             EEEEEECSSSSEEEEECT--TSCEEEEEGGGEE
T ss_pred             EEEEEEEcCCCeEEEEEC--CCCEEEEcHHHeE
Confidence            578999999999999753  3578999997653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.78  E-value=0.00065  Score=56.84  Aligned_cols=24  Identities=13%  Similarity=0.304  Sum_probs=21.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      |.|+|+|++|||||||.++|....
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            579999999999999999998753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.77  E-value=0.00039  Score=61.06  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=22.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      -.++|+||+|||||||.+.|....+
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCC
Confidence            4889999999999999999987654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.76  E-value=0.00038  Score=60.69  Aligned_cols=27  Identities=19%  Similarity=0.306  Sum_probs=23.7

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..+..++|+||||||||||.+.|....
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            356799999999999999999998764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.72  E-value=0.00041  Score=60.96  Aligned_cols=28  Identities=14%  Similarity=0.215  Sum_probs=24.1

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..++|+||||||||||.+.|....+
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCcC
Confidence            3568999999999999999999887653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.70  E-value=0.00046  Score=55.94  Aligned_cols=25  Identities=8%  Similarity=0.183  Sum_probs=22.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      |.|.|+|++|||||||+.+|+..+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999987654

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.70  E-value=0.00034  Score=59.02  Aligned_cols=24  Identities=13%  Similarity=0.385  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|.||+||||+|++++|++.+.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            456779999999999999999863

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.68  E-value=0.0012  Score=57.72  Aligned_cols=25  Identities=28%  Similarity=0.602  Sum_probs=22.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++-|+|.||+|+|||+|++.|+...
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCChhHHHHHHHHHc
Confidence            3579999999999999999999764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.68  E-value=0.00051  Score=60.16  Aligned_cols=28  Identities=18%  Similarity=0.375  Sum_probs=24.2

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..++|+||+|+|||||.+.|....+
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3568999999999999999999886654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.66  E-value=0.00052  Score=60.77  Aligned_cols=27  Identities=11%  Similarity=0.185  Sum_probs=23.4

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..+..++|+||+|||||||++.|....
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            456899999999999999999887554

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00063  Score=54.97  Aligned_cols=21  Identities=24%  Similarity=0.618  Sum_probs=19.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+|.+|||||+|+++|+..
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999999864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.65  E-value=0.002  Score=56.38  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=22.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +|-|+|.||+|+|||++++.++....
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhC
Confidence            46799999999999999999998653

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.65  E-value=0.0012  Score=54.99  Aligned_cols=24  Identities=25%  Similarity=0.549  Sum_probs=21.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|.|+-||||||+++.|.+.+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999988654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.64  E-value=0.00045  Score=55.70  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+|+|++|||||||.++|....
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999997653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.00069  Score=58.19  Aligned_cols=27  Identities=15%  Similarity=0.361  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+.++|.||+|+||||+++.|++...
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            447899999999999999999998764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0005  Score=55.79  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .|+|+|.+|||||||+++|...
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999865

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0019  Score=58.95  Aligned_cols=27  Identities=15%  Similarity=0.163  Sum_probs=23.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      ...|.|+||+|||||||.++|+..+..
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~~~   80 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLLIR   80 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            458999999999999999999876543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.52  E-value=0.00049  Score=59.24  Aligned_cols=31  Identities=19%  Similarity=0.399  Sum_probs=20.6

Q ss_pred             cccCCCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           87 KLPSFKRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        87 ~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+|...+.+|+|+||+||||||.+-+|+..+
T Consensus         6 ~~~~k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2           6 VIPDKIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             CSCSSSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3444455678899999999999998898664

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.52  E-value=0.00051  Score=60.61  Aligned_cols=27  Identities=19%  Similarity=0.452  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||++.|.-..+
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCc
Confidence            568999999999999999999876654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.00079  Score=58.72  Aligned_cols=28  Identities=14%  Similarity=0.324  Sum_probs=24.0

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..+..++|+||||||||||.+.|....+
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            4568999999999999999998876653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.45  E-value=0.00037  Score=59.76  Aligned_cols=30  Identities=23%  Similarity=0.358  Sum_probs=25.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCCCc
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKY  121 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f  121 (330)
                      .++.|+|.||+|+|||+|++++++..+..+
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~   57 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLPY   57 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCCe
Confidence            347899999999999999999988766443

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.44  E-value=0.00039  Score=49.78  Aligned_cols=32  Identities=16%  Similarity=0.341  Sum_probs=26.6

Q ss_pred             CcEEEeCCCCCceeEEeCC---CCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDN---VAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~---~~~~~GlIPS~~~   32 (330)
                      +++|+++.|++||.++..+   .+++.|+||+..+
T Consensus        31 ~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yv   65 (74)
T d1wfwa_          31 VVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSIL   65 (74)
T ss_dssp             EEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGC
T ss_pred             EEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHe
Confidence            5789999999999999843   3468999999775

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.42  E-value=0.0011  Score=53.72  Aligned_cols=21  Identities=14%  Similarity=0.422  Sum_probs=19.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+|++|||||||+++|...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            889999999999999999864

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.40  E-value=0.00075  Score=45.90  Aligned_cols=30  Identities=33%  Similarity=0.586  Sum_probs=25.2

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChh
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPE   31 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~   31 (330)
                      +|+|+++.|++||.++.. .+++.|++|+..
T Consensus        24 ~i~v~~~~~~~Ww~~~~~-~~g~~G~~P~~y   53 (58)
T d1jo8a_          24 KIINIEFVDDDWWLGELE-KDGSKGLFPSNY   53 (58)
T ss_dssp             EEEEEECCSSSEEEEEET-TTCCEEEEEGGG
T ss_pred             EEEEEEEcCCCEEEEEEC-CCCCEEEEchHH
Confidence            478999999999999864 456889999864

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.38  E-value=0.0035  Score=55.05  Aligned_cols=26  Identities=19%  Similarity=0.474  Sum_probs=23.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+-|+|.||+|+|||+|++.|+....
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhC
Confidence            46799999999999999999998763

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.38  E-value=0.0011  Score=56.50  Aligned_cols=28  Identities=25%  Similarity=0.374  Sum_probs=24.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      ..+.++|.||+|+|||++++.|++...+
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHhc
Confidence            4468999999999999999999987654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.38  E-value=0.00076  Score=60.86  Aligned_cols=26  Identities=27%  Similarity=0.533  Sum_probs=22.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ++-++|+||||||||.|++.|++..-
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccc
Confidence            46789999999999999999998753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.38  E-value=0.0013  Score=52.77  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4889999999999999999754

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.34  E-value=0.00087  Score=57.66  Aligned_cols=29  Identities=21%  Similarity=0.416  Sum_probs=23.5

Q ss_pred             cCCCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           89 PSFKRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        89 ~~~~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++..+.+|+|+||+||||||-+-+|+..+
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34455688999999999999888888654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.33  E-value=0.00094  Score=56.98  Aligned_cols=28  Identities=14%  Similarity=0.460  Sum_probs=23.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKY  121 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f  121 (330)
                      +-++|.||+|+|||++++.|+++....|
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~~   63 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTNI   63 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCCc
Confidence            4589999999999999999998865433

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.33  E-value=0.00093  Score=56.60  Aligned_cols=25  Identities=20%  Similarity=0.458  Sum_probs=21.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      .|+|+||.|||||||.++|.+....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~   26 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLED   26 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhh
Confidence            5899999999999999999876543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0013  Score=53.31  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||+|+++|...
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999999864

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.32  E-value=0.049  Score=44.02  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+++|||||.++|...
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            4899999999999999999853

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.0011  Score=59.30  Aligned_cols=29  Identities=17%  Similarity=0.352  Sum_probs=24.6

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      -.++..++|+||+|+|||||++.|+..++
T Consensus        59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          59 IEKGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            34568999999999999999999887654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.30  E-value=0.0012  Score=57.63  Aligned_cols=27  Identities=15%  Similarity=0.331  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..+.|+||+|+|||||.+.|....+
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467999999999999999998876543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.29  E-value=0.0025  Score=57.99  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=21.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ...|.|.||+|+|||||..+|+..
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHH
Confidence            357999999999999999999975

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.00047  Score=47.71  Aligned_cols=30  Identities=20%  Similarity=0.582  Sum_probs=24.9

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhHH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQ   33 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~~   33 (330)
                      ++.|++..|++||.++.   +++.|++|+...+
T Consensus        29 ~i~vl~~~~~~Ww~g~~---~g~~G~~P~~yVe   58 (62)
T d1k4us_          29 IILVLSKVNEEWLEGES---KGKVGIFPKVFVE   58 (62)
T ss_dssp             EEEEEEESSSSCEEEEC---SSCEEEECGGGCC
T ss_pred             EEEEeEEcCCCEEEEEE---CCcEEEEchHHeE
Confidence            47899999999999975   4689999997643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.28  E-value=0.00084  Score=55.51  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=23.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      -.|+|-|+.||||||+++.|.+.+++
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            37999999999999999999988754

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.27  E-value=0.00051  Score=46.34  Aligned_cols=29  Identities=14%  Similarity=0.764  Sum_probs=24.4

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ++.|+++.|++||.+++.   ++.|++|+...
T Consensus        24 ~v~v~~~~~~~Ww~g~~~---g~~G~~P~~yv   52 (55)
T d1u06a1          24 ILTLLNSTNKDWWKVEVN---DRQGFVPAAYV   52 (55)
T ss_dssp             EEEEEECCSSSEEEEEET---TEEEEEEGGGE
T ss_pred             EEEEeEEcCCCEEEEEEC---CeEEEEeHHHE
Confidence            478999999999999864   47899999754

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.27  E-value=0.0012  Score=61.19  Aligned_cols=28  Identities=21%  Similarity=0.447  Sum_probs=23.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKY  121 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f  121 (330)
                      .-+.++||||||||.|+++|++.....|
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~~~~~~~   96 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAKHLDIPI   96 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             cceeeeCCCCccHHHHHHHHHhhcccce
Confidence            4699999999999999999998764433

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.26  E-value=0.0014  Score=54.33  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=19.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+|++|||||||+++|...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            889999999999999999864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.25  E-value=0.0013  Score=55.81  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=21.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+.++|.||+|+||||+++.|++..
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH
Confidence            3569999999999999999998764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.25  E-value=0.0011  Score=56.68  Aligned_cols=25  Identities=20%  Similarity=0.588  Sum_probs=22.3

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +.++|.||+|+||||+++.|++...
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            5689999999999999999998754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.23  E-value=0.0012  Score=52.28  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||||.++|...
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999865

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.22  E-value=0.0027  Score=59.23  Aligned_cols=23  Identities=35%  Similarity=0.605  Sum_probs=19.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ..++|+||+|||||+|+..|+..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHHH
Confidence            45788999999999999877765

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0016  Score=52.52  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||+|+++|...
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999999863

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.0017  Score=52.09  Aligned_cols=20  Identities=20%  Similarity=0.469  Sum_probs=18.9

Q ss_pred             EEEEcCCCccHHHHHHHHHh
Q psy933           96 LVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~  115 (330)
                      |+|+|++|||||||+++|..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999985

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0016  Score=52.91  Aligned_cols=21  Identities=33%  Similarity=0.732  Sum_probs=19.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+|++|||||||+++|...
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            889999999999999999864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.0016  Score=52.65  Aligned_cols=21  Identities=29%  Similarity=0.738  Sum_probs=19.2

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+|++|||||||+++|...
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            889999999999999999853

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.002  Score=52.20  Aligned_cols=21  Identities=24%  Similarity=0.640  Sum_probs=19.5

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+|.+|||||+|+++|...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999999864

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.07  E-value=0.0084  Score=54.31  Aligned_cols=29  Identities=17%  Similarity=0.450  Sum_probs=25.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCCCc
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPDKY  121 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f  121 (330)
                      ++.|+++||+||||||+++.|+...|...
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~~~  194 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEE  194 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred             CCCEEEEeeccccchHHHHHHhhhccccc
Confidence            45789999999999999999999887643

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0011  Score=44.27  Aligned_cols=29  Identities=34%  Similarity=0.618  Sum_probs=24.1

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |+.|+++.|++||.+++   +++.|++|+..+
T Consensus        24 ~v~vl~~~~~gWw~g~~---~g~~G~~P~~yv   52 (53)
T d1wlpb1          24 AVEVIHKLLDGWWVIRK---DDVTGYFPSMYL   52 (53)
T ss_dssp             EEEEEECCTTSSEEEES---SSCEEEECSTTE
T ss_pred             EEEEEeecCCceEEEEE---CCcEeEecHHhC
Confidence            47899999999999984   357999998653

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0014  Score=44.22  Aligned_cols=31  Identities=39%  Similarity=0.860  Sum_probs=25.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|+|+++++++||.++.. .+++.|++|+...
T Consensus        24 ~i~v~~~~~~~Ww~~~~~-~~g~~G~vP~~yv   54 (57)
T d1efna_          24 KFQILNSSEGDWWEARSL-TTGETGYIPSNYV   54 (57)
T ss_dssp             EEEEEECSSCSEEEEEET-TTTEEEEEEGGGE
T ss_pred             EEEEEEecCCCCEEEEEC-CCCCEEEEeHHHe
Confidence            478999999999999865 3568899998653

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.98  E-value=0.0017  Score=55.52  Aligned_cols=25  Identities=24%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +++|+|+||+||||||.+.+|+..+
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678899999999999999998764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0027  Score=50.67  Aligned_cols=21  Identities=14%  Similarity=0.461  Sum_probs=19.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+|.+|||||+|+++|+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999864

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.93  E-value=0.0022  Score=54.73  Aligned_cols=26  Identities=23%  Similarity=0.497  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++++|+|+||+||||||.+-+|+..+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999988888654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0029  Score=50.99  Aligned_cols=22  Identities=32%  Similarity=0.567  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||+|+++|+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999999854

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.0028  Score=51.08  Aligned_cols=22  Identities=36%  Similarity=0.606  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||+|+++++..
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999999865

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0015  Score=44.37  Aligned_cols=29  Identities=24%  Similarity=0.717  Sum_probs=24.3

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ++.|+.++|.+||.++..   ++.|++|+..+
T Consensus        26 ~i~vl~~~~~~Ww~~~~~---g~~G~~P~~yv   54 (58)
T d1ng2a1          26 VVEVVEKSESGWWFCQMK---AKRGWIPASFL   54 (58)
T ss_dssp             EEEEEECCTTSCCEEEEC---CCCCCCCGGGC
T ss_pred             EEEEEEecCCCeEEEEEC---CCCcEEcHhHE
Confidence            478999999999999864   46799998764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.90  E-value=0.0021  Score=61.08  Aligned_cols=25  Identities=28%  Similarity=0.566  Sum_probs=22.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++-|+|+||||||||.|+++|++..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999999865

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.003  Score=51.35  Aligned_cols=21  Identities=19%  Similarity=0.589  Sum_probs=19.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+|.+|||||+|+++|...
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999999864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.87  E-value=0.0031  Score=50.61  Aligned_cols=22  Identities=14%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||||+++|...
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.003  Score=50.47  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=19.3

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+|.+|||||+|+++|+..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999854

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0029  Score=51.34  Aligned_cols=22  Identities=27%  Similarity=0.643  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999999864

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0033  Score=50.66  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||+|+++++..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999999864

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.81  E-value=0.003  Score=58.97  Aligned_cols=54  Identities=19%  Similarity=0.124  Sum_probs=32.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCC---CccccccccccCCCCccc-CCeeEEEeccc
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPD---KYAYPVPHTTRSPRSDEE-NGRAYYFISHD  148 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~---~f~~~v~~TTR~pr~~E~-~G~dy~fvs~~  148 (330)
                      -|+|+|.+|||||||.|.|......   .....+..||+.+..... ++..+.++|..
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtP  115 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLP  115 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCC
Confidence            5999999999999999999864321   233346678887655332 22335555543

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0023  Score=51.40  Aligned_cols=22  Identities=27%  Similarity=0.620  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||+|+++|+..
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999999864

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.80  E-value=0.0032  Score=51.47  Aligned_cols=21  Identities=38%  Similarity=0.825  Sum_probs=19.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+|.+|||||||+++|...
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999863

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.78  E-value=0.0019  Score=43.90  Aligned_cols=29  Identities=31%  Similarity=0.810  Sum_probs=24.2

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|+++.|++||.++..   +..|++|+...
T Consensus        26 ~i~v~~~~~~~W~~g~~~---g~~G~~P~~yV   54 (58)
T d1uj0a_          26 LITVLDDSDANWWQGENH---RGTGLFPSNFV   54 (58)
T ss_dssp             EEEEEECCSSSEEEEEET---TEEEEEEGGGE
T ss_pred             EEEEeEEeCCCEEEEEEC---CeEEEEehHhE
Confidence            578999999999999863   57899998653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0022  Score=55.57  Aligned_cols=27  Identities=19%  Similarity=0.372  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .+..++|+||+|+|||||.+.|....|
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl~~   50 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGMTS   50 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTSCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            568999999999999999999886554

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.00062  Score=46.67  Aligned_cols=31  Identities=16%  Similarity=0.387  Sum_probs=24.9

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ++.|+++.|++||.++.. .+++.|+|||...
T Consensus        27 ~i~v~~~~~~~W~~~~~~-~~g~~G~vP~nyv   57 (60)
T d1arka_          27 AIINVQAIDEGWMYGTVQ-RTGRTGMLPANYV   57 (60)
T ss_dssp             EECCSEECSSSEEEEECT-TTCCEEEEETTTC
T ss_pred             EEEEEEEcCCCEEEEEEC-CCCCEEEEcHHHE
Confidence            467888999999999864 3578999999653

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.73  E-value=0.0037  Score=50.24  Aligned_cols=22  Identities=32%  Similarity=0.608  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||+|+++|...
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999999864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0026  Score=51.12  Aligned_cols=23  Identities=17%  Similarity=0.511  Sum_probs=20.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      +-|+|+|++|||||+|+++|+..
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            45899999999999999999753

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.69  E-value=0.0028  Score=50.84  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0027  Score=51.42  Aligned_cols=21  Identities=24%  Similarity=0.588  Sum_probs=19.2

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+|++|||||+|+++++..
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999999854

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.69  E-value=0.0027  Score=53.67  Aligned_cols=23  Identities=17%  Similarity=0.499  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .++|.||+|+||||+++.|++..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHHH
Confidence            48899999999999999998764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0028  Score=50.95  Aligned_cols=22  Identities=41%  Similarity=0.706  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||+|+++|...
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999999864

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0028  Score=54.26  Aligned_cols=25  Identities=24%  Similarity=0.554  Sum_probs=21.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +.+|+|+||+||||||-+-+|+..+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999998654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.0028  Score=53.45  Aligned_cols=23  Identities=17%  Similarity=0.397  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      +.++|.||+|+||||+++.|+++
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            34899999999999999999876

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.65  E-value=0.0026  Score=44.35  Aligned_cols=30  Identities=43%  Similarity=0.897  Sum_probs=24.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|+++.|.+||.++..  ++..|++|+...
T Consensus        26 ~i~v~~~~~~~Ww~~~~~--~g~~G~~P~~yV   55 (67)
T d1gl5a_          26 EYIILEKNDLHWWRARDK--YGSEGYIPSNYV   55 (67)
T ss_dssp             EEEEEECSSSSEEEEECS--SSCEEEEETTSE
T ss_pred             EEEEEEecCCCcEEEEEC--CCCEEEEEhHHe
Confidence            578999999999999742  356899999764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0029  Score=50.95  Aligned_cols=21  Identities=24%  Similarity=0.555  Sum_probs=19.1

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+|.+|||||||+++|+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999853

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0029  Score=51.74  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||+++|...
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3889999999999999999853

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0031  Score=50.92  Aligned_cols=22  Identities=27%  Similarity=0.602  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||+|+++++..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.60  E-value=0.038  Score=51.15  Aligned_cols=107  Identities=11%  Similarity=0.135  Sum_probs=65.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecc---cchhhHH-----hccceeeEEee
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISH---DEMMSDI-----AANQYLEYGTH  165 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~---~~f~~~i-----~~~~fle~~~~  165 (330)
                      -.|+|+||+||||||.+..+++..+..-...  +|-=.|=+.+.+|..-.-++.   ..|...+     ..-+.|-.||.
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i--~tiEdPiE~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEi  236 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQELNSSERNI--LTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI  236 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCCTTSCE--EEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred             ceEEEEcCCCCCccHHHHHHhhhhcCCCceE--EEeccCcccccCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecCc
Confidence            4899999999999999999988764322211  222344444555554333332   2344433     34467777777


Q ss_pred             cCccccccHHHHHHHHHhCCeEEEEeCH----HHHHHHHhcCCC
Q psy933          166 EDAMYGTKLETIRRIHQEGKIAILDVEP----QALKILRTGEFS  205 (330)
Q Consensus       166 ~g~~YGts~~~i~~v~~~gk~~vldv~~----~~v~~L~~~~~~  205 (330)
                      .+.   .+....-++...|+.++.-++.    .++.+|...+..
T Consensus       237 Rd~---~ta~~a~~aa~tGhlV~tTlHa~~a~~~~~Rl~~~~~~  277 (401)
T d1p9ra_         237 RDL---ETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIE  277 (401)
T ss_dssp             CSH---HHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCC
T ss_pred             CCh---HHHHHHHHHHhcCCeEEEEeccCchHhhhhhhhhcccc
Confidence            664   2233334566789999988873    557777766543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.57  E-value=0.055  Score=45.15  Aligned_cols=21  Identities=14%  Similarity=0.262  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHh
Q psy933           95 TLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~  115 (330)
                      .|+++|..++|||||.++|+.
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            489999999999999999974

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.56  E-value=0.0023  Score=43.24  Aligned_cols=29  Identities=21%  Similarity=0.700  Sum_probs=24.1

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ++.|+++.|++||.++.   +++.|++|+...
T Consensus        25 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   53 (57)
T d1utia_          25 VVEVLDSSNPSWWTGRL---HNKLGLFPANYV   53 (57)
T ss_dssp             EEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEeEEcCCCEEEEEE---CCcEEEEEHHHE
Confidence            47899999999999985   357899998653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0027  Score=51.59  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      +-|+|+|.+|||||+|+++|...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            45889999999999999999864

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.55  E-value=0.0032  Score=54.84  Aligned_cols=24  Identities=13%  Similarity=0.277  Sum_probs=21.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +-|+|.||+|+|||+|++.|+...
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhcc
Confidence            468999999999999999998764

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=95.54  E-value=0.0023  Score=43.39  Aligned_cols=29  Identities=34%  Similarity=0.871  Sum_probs=24.4

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|+|+++.|++||.++..   ++.|++|+...
T Consensus        26 ~i~v~~~~~~~W~~g~~~---g~~G~~P~~yv   54 (58)
T d1sema_          26 VITLINKDDPNWWEGQLN---NRRGIFPSNYV   54 (58)
T ss_dssp             EEEEEECSSSSEEEEEET---TEEEEEEGGGE
T ss_pred             EEEEeEEcCCCEEEEEEC---CeEEEEEhhhE
Confidence            578999999999999863   57899998653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0034  Score=51.33  Aligned_cols=22  Identities=18%  Similarity=0.339  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||+|+++|+..
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999864

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0038  Score=53.02  Aligned_cols=27  Identities=22%  Similarity=0.493  Sum_probs=24.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      ++.|||-|+-||||||+++.|.+.++.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            478999999999999999999998875

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0027  Score=42.70  Aligned_cols=29  Identities=24%  Similarity=0.798  Sum_probs=24.3

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|.|+++.|++||.++..   ++.|++|+...
T Consensus        25 ~i~v~~~~~~~W~~g~~~---g~~G~~P~~yv   53 (56)
T d1gcqa_          25 FIHVMDNSDPNWWKGACH---GQTGMFPRNYV   53 (56)
T ss_dssp             EEEEEECCSSSEEEEEET---TEEEEEEGGGE
T ss_pred             EEEEEEecCCCEEEEEEC---CeEEEEEHhHE
Confidence            478999999999999863   57899998653

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0032  Score=45.26  Aligned_cols=32  Identities=22%  Similarity=0.627  Sum_probs=26.6

Q ss_pred             CcEEEeCCCCCceeEEeCC--CCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDN--VAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~--~~~~~GlIPS~~~   32 (330)
                      ||+|+++.|++||.++..+  ...+.|++|+...
T Consensus        31 ~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv   64 (80)
T d1ue9a_          31 LILILKKNTSGWWQGELQARGKKRQKGWFPASHV   64 (80)
T ss_dssp             EEEEEEECSSSEEEEEECSCCSSCCEEEEETTSE
T ss_pred             EEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeE
Confidence            5899999999999998743  4677899998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0033  Score=50.73  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.3

Q ss_pred             EEEEcCCCccHHHHHHHHHhhC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      |+|+|++|||||+|+++|....
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            7899999999999999997643

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.0046  Score=52.29  Aligned_cols=26  Identities=31%  Similarity=0.584  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..++|+||+|||||+|+..|++..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHH
Confidence            34589999999999999999998764

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.42  E-value=0.073  Score=46.89  Aligned_cols=24  Identities=4%  Similarity=0.153  Sum_probs=21.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|.|+|+|..|+|||||+.+|+..
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~   29 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYY   29 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            478999999999999999999754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.41  E-value=0.0042  Score=50.00  Aligned_cols=22  Identities=23%  Similarity=0.520  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||||.++|...
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999653

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0024  Score=44.08  Aligned_cols=31  Identities=32%  Similarity=0.739  Sum_probs=25.6

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|+|+++.+++||.++... +++.|++|+...
T Consensus        26 ~i~v~~~~~~~Ww~~~~~~-~g~~G~vP~~yv   56 (64)
T d1fmka1          26 RLQIVNNTEGDWWLAHSLS-TGQTGYIPSNYV   56 (64)
T ss_dssp             EEEESCCCSSSEEEEEETT-TCCEEEEEGGGE
T ss_pred             EEEEEEEcCCCcEEEEECC-CCCEEEEehHHe
Confidence            4789999999999998753 567999998654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0052  Score=49.73  Aligned_cols=23  Identities=30%  Similarity=0.635  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+|+|.+|||||+|+++|....
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            38899999999999999998654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.0045  Score=52.11  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .++|.||+|+||||+++.|+++.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHh
Confidence            47899999999999999998863

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0062  Score=49.18  Aligned_cols=27  Identities=19%  Similarity=0.261  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .++.++|.||+|+|||+|+..|+...-
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999987643

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0047  Score=50.83  Aligned_cols=22  Identities=18%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||+|+++|+..
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999999864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.005  Score=49.40  Aligned_cols=22  Identities=32%  Similarity=0.656  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||+|++++...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3899999999999999999864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.0057  Score=54.13  Aligned_cols=26  Identities=27%  Similarity=0.557  Sum_probs=22.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..++|+||+|||||+|+..|++..
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            44688999999999999999998763

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.19  E-value=0.0041  Score=52.90  Aligned_cols=23  Identities=26%  Similarity=0.550  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .++|.||+|+||||+++.|++..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            48899999999999999998873

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.18  E-value=0.0052  Score=49.56  Aligned_cols=22  Identities=18%  Similarity=0.572  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||+|++++...
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999998753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0091  Score=48.71  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+++|.+|||||+|+++++...
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58999999999999999998753

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.11  E-value=0.0054  Score=50.13  Aligned_cols=22  Identities=14%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||+|+++++..
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999999874

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.11  E-value=0.0042  Score=52.87  Aligned_cols=33  Identities=15%  Similarity=0.249  Sum_probs=25.5

Q ss_pred             eecccCCCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           85 VVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        85 V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +...+.....|++|.||+|+|||.|++.+..+.
T Consensus        28 ~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          28 ALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             HHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHh
Confidence            334444444679999999999999999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.10  E-value=0.0035  Score=50.68  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHh
Q psy933           95 TLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~  115 (330)
                      -|+|+|++|||||||.++|..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            588999999999999999974

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.09  E-value=0.0035  Score=53.60  Aligned_cols=23  Identities=13%  Similarity=0.388  Sum_probs=19.5

Q ss_pred             EEEEcCCCccHHHHHHHHHhhCC
Q psy933           96 LVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ++|.||+|+|||++++.|++...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHHH
Confidence            45569999999999999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.07  E-value=0.0038  Score=50.79  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=18.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHh
Q psy933           95 TLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~  115 (330)
                      -|+|+|++|||||||.++|..
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            588999999999999999853

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0056  Score=50.14  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||+|+++|+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            3899999999999999999864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.05  E-value=0.0053  Score=50.17  Aligned_cols=19  Identities=26%  Similarity=0.524  Sum_probs=17.9

Q ss_pred             EEEEEcCCCccHHHHHHHH
Q psy933           95 TLVLLGAHGVGRRHIKNTL  113 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L  113 (330)
                      -|+|+|.+|||||||.++|
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999999

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.0043  Score=55.95  Aligned_cols=24  Identities=21%  Similarity=0.504  Sum_probs=21.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .++|+||+|||||.|++.|++...
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCcchhHHHHHHHHhhcc
Confidence            688999999999999999998754

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.04  E-value=0.38  Score=38.91  Aligned_cols=24  Identities=13%  Similarity=0.354  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+++|-..+|||||.++|.....
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~~~   30 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGVWT   30 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred             EEEEEeccCCcHHHHHHHHHhhhh
Confidence            478999999999999999976443

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.02  E-value=0.0059  Score=40.79  Aligned_cols=31  Identities=19%  Similarity=0.587  Sum_probs=23.8

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChh
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPE   31 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~   31 (330)
                      +|.|++.+|.+||-..+...+++.|++|+..
T Consensus        23 ~i~v~~~~~~~~w~~~~~~~~g~~G~~P~ny   53 (56)
T d1zuua1          23 KISLVARDTGSGWTKINNDTTGETGLVPTTY   53 (56)
T ss_dssp             CEEEEECCSSSSEEEEEETTTTEEEEEEGGG
T ss_pred             EEEEEEEecCCCcEEEeCCCCceEEEEehhh
Confidence            5789999888876655544578899999864

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0039  Score=48.12  Aligned_cols=30  Identities=40%  Similarity=0.682  Sum_probs=25.4

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhHH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQ   33 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~~   33 (330)
                      |++|+++.|++||.++..   +..|++|+..++
T Consensus        38 ~i~Vl~~~~~gWw~g~~~---g~~G~~P~~yv~   67 (118)
T d1ng2a2          38 AVEVIHKLLDGWWVIRKD---DVTGYFPSMYLQ   67 (118)
T ss_dssp             EEEEEECCTTSEEEEEET---TEEEEEEGGGEE
T ss_pred             EEEEeEecCCCeEEEEEC---CeEEEEehhhEE
Confidence            589999999999999864   568999997753

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.99  E-value=0.0027  Score=56.90  Aligned_cols=26  Identities=23%  Similarity=0.446  Sum_probs=19.7

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .++|.|+|+|||||||+++.|.+.+.
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHh
Confidence            45899999999999999999987654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=0.0062  Score=54.97  Aligned_cols=24  Identities=17%  Similarity=0.281  Sum_probs=21.0

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -+|.|.|++||||||+++.|....
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCCcHHHHHHHHHH
Confidence            378899999999999999988764

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0027  Score=47.54  Aligned_cols=29  Identities=38%  Similarity=0.920  Sum_probs=24.4

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |+.|+++.|++||.++.   +++.|++|+...
T Consensus        58 ~i~Vl~~~~~gWw~g~~---~g~~G~~P~nyV   86 (98)
T d1udla_          58 LINVMNKDDPDWWQGEI---NGVTGLFPSNYV   86 (98)
T ss_dssp             EEEECBCCSSSEEBCBS---SSCBCCEETTSE
T ss_pred             EEEEeEecCCCeEEEEE---CCeEEEEchHHE
Confidence            57899999999999975   457899999664

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.0038  Score=50.47  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=18.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|++|||||+|+++|...
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999998754

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.0012  Score=46.25  Aligned_cols=30  Identities=33%  Similarity=0.772  Sum_probs=24.2

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|+++.|++||.++.  .+++.|++|+...
T Consensus        32 ~i~v~~~~~~~Ww~~~~--~~g~~G~vP~~yv   61 (67)
T d1awwa_          32 EYFILEESNLPWWRARD--KNGQEGYIPSNYV   61 (67)
T ss_dssp             EEECCCCCSSSEECCBC--TTSCBCCEETTTB
T ss_pred             EEEEEEEcCCCeEEEEE--CCCCEEEEcHHHe
Confidence            47889999999999963  3567899999764

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.83  E-value=0.0058  Score=42.90  Aligned_cols=30  Identities=23%  Similarity=0.778  Sum_probs=23.3

Q ss_pred             CcEEEeC-CCCCceeEEeCCCCCCceeeCChh
Q psy933            1 MFQIISK-DDHNWWQARKDNVAGSAGLIPSPE   31 (330)
Q Consensus         1 iL~v~~~-~D~~WWQA~~~~~~~~~GlIPS~~   31 (330)
                      |+.|+++ .|.+||+++.. .+++.|++||..
T Consensus        34 ~i~Vl~~~~~~gWw~G~~~-~~g~~G~fP~ny   64 (69)
T d1gcqc_          34 IVELTKAEAEHNWWEGRNT-ATNEVGWFPCNR   64 (69)
T ss_dssp             EEEEEECCTTCSEEEEEET-TTTEEEEEEGGG
T ss_pred             EEEEEEEecCCCEEEEEEC-CCCCEEEEeHHH
Confidence            5788876 56789999864 357899999854

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.80  E-value=0.0075  Score=48.58  Aligned_cols=21  Identities=33%  Similarity=0.654  Sum_probs=19.2

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+|.+|||||+|+++++..
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999999864

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.74  E-value=0.0083  Score=49.81  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .++-|+|+|+||+||||++-.|++.
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            3578999999999999999999874

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.72  E-value=0.008  Score=49.95  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=22.0

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .++-|+|.||||+||||++-.|++.
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            4578999999999999999999864

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.66  E-value=0.0036  Score=42.50  Aligned_cols=29  Identities=28%  Similarity=0.900  Sum_probs=22.1

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|.|++++| +||.++..  ++..|+||+...
T Consensus        25 ~i~v~~~~~-~ww~~~~~--~g~~G~~P~nyv   53 (59)
T d1i07a_          25 VLEILDDRR-QWWKVRNA--SGDSGFVPNNIL   53 (59)
T ss_dssp             EEEECGGGC-CEEEEECT--TSCEEEEEGGGE
T ss_pred             EEEEEEEcC-CcEEEEEc--CCCEEEECHHHe
Confidence            477888765 79999753  357899998653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.57  E-value=0.0082  Score=54.46  Aligned_cols=23  Identities=13%  Similarity=0.319  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .++|+||+|+|||.|++.|+...
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHh
Confidence            34457999999999999999764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.54  E-value=0.01  Score=48.14  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      -|+|+|.+|||||+|.+++....
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.52  E-value=0.0052  Score=49.66  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=8.5

Q ss_pred             EEEEcCCCccHHHHHHHHHhh
Q psy933           96 LVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |+|+|.+|||||||+++|+..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999999853

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.44  E-value=0.009  Score=50.58  Aligned_cols=22  Identities=32%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|.+|||||||+++|...
T Consensus         8 KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.44  E-value=0.38  Score=39.36  Aligned_cols=23  Identities=9%  Similarity=0.303  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .|+++|...+|||||.++|+...
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhh
Confidence            48999999999999999998543

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.43  E-value=0.01  Score=50.37  Aligned_cols=24  Identities=17%  Similarity=0.443  Sum_probs=21.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      +.|+|+|+.||||||+++.|.+.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            579999999999999999998764

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.41  E-value=0.0056  Score=42.66  Aligned_cols=30  Identities=37%  Similarity=0.873  Sum_probs=23.1

Q ss_pred             CcEEEeCCC-----CCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDD-----HNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D-----~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|+|+++.|     .+||.++.  .+++.|++||...
T Consensus        30 ~i~vl~~~d~~~~~~~Ww~g~~--~~G~~G~~P~nyv   64 (67)
T d2v1ra1          30 LMAILSKKDPLGRDSDWWKVRT--KNGNIGYIPYNYI   64 (67)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEC--TTSCEEEEEGGGE
T ss_pred             EEEEEEeecCCCcCCCeEEEEe--CCCCEEEEEHHHE
Confidence            478998876     48999974  3568899998653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.39  E-value=0.011  Score=47.74  Aligned_cols=22  Identities=32%  Similarity=0.416  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      -|+|+|..|||||+|+++|...
T Consensus         4 KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4899999999999999999754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.33  E-value=0.011  Score=49.22  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=21.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .++.++|.||+|+|||+|+..++..
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4689999999999999999988754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=94.31  E-value=0.011  Score=51.80  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=22.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR  133 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr  133 (330)
                      -.|.++|-++||||||+|.|....- .-.+..|.|||...
T Consensus       113 ~~v~vvG~PNvGKSsliN~L~~~~~-~~~~~~pG~Tr~~~  151 (273)
T d1puja_         113 IRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQ  151 (273)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCC-C------------C
T ss_pred             eEEEEEecCccchhhhhhhhhccce-EEECCcccccccce
Confidence            3589999999999999999998654 35677889998654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.29  E-value=0.0095  Score=50.80  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=21.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +.++|.|..|||||||+++|++..+
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~~   28 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQH   28 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcCC
Confidence            4678999999999999999998643

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.0093  Score=42.45  Aligned_cols=29  Identities=21%  Similarity=0.681  Sum_probs=24.5

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|+++.|.+||.+...   ++.|++|+...
T Consensus        34 ~i~v~~~~~~~W~~g~~~---g~~G~~P~~yv   62 (76)
T d1ujya_          34 IIYVTRVEEGGWWEGTLN---GRTGWFPSNYV   62 (76)
T ss_dssp             CEEESSCCSSSCEEEEET---TEEEEECTTTS
T ss_pred             EEEEeEEcCCCEEEEEEC---CcEEEEchHHE
Confidence            578999999999999753   56899999764

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.23  E-value=0.014  Score=53.67  Aligned_cols=29  Identities=14%  Similarity=0.260  Sum_probs=25.0

Q ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           91 FKRKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      ..++.++|.||+|+|||++++.|+.....
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~  180 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCGG  180 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            35679999999999999999999987643

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.19  E-value=0.013  Score=48.22  Aligned_cols=25  Identities=20%  Similarity=0.426  Sum_probs=22.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .++-|+|.|+||+||||++-.|++.
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            4578999999999999999999875

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.07  E-value=0.014  Score=52.00  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=18.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .|.|.|++|||||||+..|...
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            5668999999999999877654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.03  E-value=0.012  Score=52.52  Aligned_cols=38  Identities=16%  Similarity=0.133  Sum_probs=21.2

Q ss_pred             EEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933           96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD  135 (330)
Q Consensus        96 ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~  135 (330)
                      |.|+|-+.||||||.+.|....+.  ...-|+||-.|..|
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~~~--v~nypftT~~pn~G   40 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVDVE--IANYPFTTIEANVG   40 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC----------------CCEE
T ss_pred             EeEECCCCCCHHHHHHHHHCCCCc--hhcCCCCcccCccc
Confidence            899999999999999999876542  44557777666444

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.77  E-value=0.017  Score=48.61  Aligned_cols=26  Identities=19%  Similarity=0.378  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .++.++|.||+|+|||+|+-.++...
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            35799999999999999999887654

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.0021  Score=45.39  Aligned_cols=31  Identities=19%  Similarity=0.490  Sum_probs=24.0

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhHH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQ   33 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~~   33 (330)
                      ||+|+++.|.+||.++..  ....|++|+...+
T Consensus        30 ~i~v~~~~~~~Ww~g~~~--~~~~G~fP~~yv~   60 (71)
T d2hspa_          30 IIQNVEKQEGGWWRGDYG--GKKQLWFPSNYVE   60 (71)
T ss_dssp             EEBSCCCBTTTEECCBCS--SCCSCCEETTTCC
T ss_pred             EEEEEEecCCCEEEEEEC--CeEEEEEchHHeE
Confidence            578899999999999743  3455899997653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=93.74  E-value=0.45  Score=39.13  Aligned_cols=22  Identities=9%  Similarity=0.234  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhh
Q psy933           95 TLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .|+++|-.++|||||.++|...
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            4899999999999999999753

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.69  E-value=0.011  Score=52.91  Aligned_cols=25  Identities=20%  Similarity=0.535  Sum_probs=22.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      -|+|+||+|+|||+|+++|....|.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCCC
Confidence            5899999999999999999987764

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.62  E-value=0.012  Score=39.41  Aligned_cols=29  Identities=17%  Similarity=0.548  Sum_probs=20.6

Q ss_pred             CcEEEeCCCCC-ceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHN-WWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~-WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +++|+++++.+ ||.++.   .++.|+|||...
T Consensus        24 ~i~vl~~~~~~~W~~~~~---~g~~G~~P~~yv   53 (57)
T d1opka1          24 KLRVLGYNHNGEWCEAQT---KNGQGWVPSNYI   53 (57)
T ss_dssp             EEEEEEECTTSSEEEEEC---SSCEEEEEGGGE
T ss_pred             EEEEeEecCCCCEEEEEE---CCCEeEEchhhe
Confidence            47889877665 667764   346799998653

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.01  Score=40.78  Aligned_cols=28  Identities=32%  Similarity=0.761  Sum_probs=21.4

Q ss_pred             CcEEEeCCCC---CceeEEeCCCCCCceeeCChh
Q psy933            1 MFQIISKDDH---NWWQARKDNVAGSAGLIPSPE   31 (330)
Q Consensus         1 iL~v~~~~D~---~WWQA~~~~~~~~~GlIPS~~   31 (330)
                      +|.|++++|+   +||.++.   +++.|++|+..
T Consensus        28 ~i~vl~~~~~~~~gW~~g~~---~g~~G~~P~~y   58 (63)
T d1ycsb2          28 CMTIIHREDEDEIEWWWARL---NDKEGYVPRNL   58 (63)
T ss_dssp             EEEECCCCTTSCSSEEEEEE---TTEEEEEEGGG
T ss_pred             EEEEEEecCCCCCCEEEEEE---CCeEEEEchHH
Confidence            4678877765   4999986   35789999865

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.50  E-value=0.021  Score=51.27  Aligned_cols=23  Identities=30%  Similarity=0.697  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+.++||+|+|||.|++.|++..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHh
Confidence            56788999999999999999874

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.44  E-value=0.024  Score=47.57  Aligned_cols=25  Identities=20%  Similarity=0.476  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ++..++|.||+|+|||+|+..++..
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4579999999999999999999876

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.43  E-value=0.024  Score=49.62  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=22.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+.|+|.|+.|+|||||++.+.+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999998764

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.042  Score=48.43  Aligned_cols=35  Identities=23%  Similarity=0.376  Sum_probs=26.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS  131 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~  131 (330)
                      .+|.++||.++|||+|+|.|+..   .+++.+.+|+.+
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~---~~~f~~~~~~~~   67 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGK---KKGFSLGSTVQS   67 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTC---SSCSCCCCSSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC---CCCCccCCCCCC
Confidence            37889999999999999999864   345566555444

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.014  Score=40.93  Aligned_cols=31  Identities=32%  Similarity=0.763  Sum_probs=23.0

Q ss_pred             CcEEEeCC-CCCceeEEeCCCCCCceeeCChhHH
Q psy933            1 MFQIISKD-DHNWWQARKDNVAGSAGLIPSPELQ   33 (330)
Q Consensus         1 iL~v~~~~-D~~WWQA~~~~~~~~~GlIPS~~~~   33 (330)
                      ||.|+++. |..||.++.  ..+..|++|+..++
T Consensus        30 ~i~vl~~~~~~~W~~~~~--~~g~~G~~P~~yve   61 (71)
T d1k9aa1          30 VLTIVAVTKDPNWYKAKN--KVGREGIIPANYVQ   61 (71)
T ss_dssp             EEEEEEECSSTTEEEEEC--TTCCEEEEEGGGEE
T ss_pred             EEEEeEeccCCCEEEEEe--CCCCEEEEchHHeE
Confidence            47888875 667888874  35678999997754

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.03  E-value=0.03  Score=47.60  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=20.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ..++|.||+|+||+++++.+++..
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHHh
Confidence            468999999999999999887764

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.012  Score=40.11  Aligned_cols=30  Identities=27%  Similarity=0.708  Sum_probs=22.3

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|+|++++|. ||-++.. .+++.|++|+...
T Consensus        30 ~i~v~~~~~~-ww~~~~~-~~g~~G~~P~~yV   59 (62)
T d2iima1          30 QLRILEQSGE-WWKAQSL-TTGQEGFIPFNFV   59 (62)
T ss_dssp             EEEEEECCSS-EEEEEET-TTCCEEEEEGGGE
T ss_pred             EEEEeEEcCC-CEEEEec-cCCeEeEEcHHHE
Confidence            5789998865 7777654 3568999998654

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.028  Score=46.97  Aligned_cols=26  Identities=15%  Similarity=0.206  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+++++|.||+|+|||+|+-.++...
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            35799999999999999999998654

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.89  E-value=0.035  Score=49.04  Aligned_cols=40  Identities=15%  Similarity=0.238  Sum_probs=31.9

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhC-CCCccccccccccCCCCc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKF-PDKYAYPVPHTTRSPRSD  135 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~-p~~f~~~v~~TTR~pr~~  135 (330)
                      --|.|+|-+.||||||.+.|.... +.  ...-|.||..|-.|
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~~~~--~anypftTi~pn~g   51 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSVLGN--PANYPYATIDPEEA   51 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHSTTTS--TTCCSSCCCCTTEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCCCC--cCCCCccCccCCeE
Confidence            359999999999999999998653 22  34568999988766

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.86  E-value=0.034  Score=46.53  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ..++|.||+|+||+|++..+++.
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Confidence            46999999999999999988875

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.028  Score=38.42  Aligned_cols=30  Identities=27%  Similarity=0.639  Sum_probs=22.4

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|.|++++ ++||.++... +++.|++|+...
T Consensus        28 ~i~v~~~~-~~ww~~~~~~-~g~~G~vP~~yv   57 (65)
T d1qcfa1          28 QMVVLEES-GEWWKARSLA-TRKEGYIPSNYV   57 (65)
T ss_dssp             EEEEEECC-TTEEEEEETT-TCCEEEEEGGGE
T ss_pred             EEEEEEEC-CCCEEEEEcc-CCCEEEEchHHe
Confidence            47888865 4699987653 467899999764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.76  E-value=0.038  Score=46.75  Aligned_cols=23  Identities=13%  Similarity=0.286  Sum_probs=20.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      +.|+|+|.+++|||||.++|...
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhh
Confidence            45999999999999999999864

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.64  E-value=0.0088  Score=40.04  Aligned_cols=28  Identities=29%  Similarity=0.833  Sum_probs=17.1

Q ss_pred             cEEEeCC-CCCceeEEeCCCCCCceeeCChhH
Q psy933            2 FQIISKD-DHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         2 L~v~~~~-D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |.|++++ ++.||+++.   +++.|++|+...
T Consensus        25 v~v~~~~~~~~W~~~~~---~g~~G~vP~nyv   53 (56)
T d1gria1          25 LKVLNEECDQNWYKAEL---NGKDGFIPKNYI   53 (56)
T ss_dssp             EEC------CCEEEEES---SSCEEEEEGGGE
T ss_pred             EEEEeccCCCCeEEEEE---CCcEEEEehhhE
Confidence            5677754 578888874   457899998653

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.60  E-value=0.031  Score=46.21  Aligned_cols=26  Identities=15%  Similarity=0.296  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..++|.||+|+|||+++..++...
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            35799999999999999999998654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.56  E-value=0.046  Score=47.70  Aligned_cols=37  Identities=14%  Similarity=0.300  Sum_probs=27.2

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSP  132 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~p  132 (330)
                      +-||++|..++|||||+|.|+...  .+......|||.|
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~--~lP~~~~~~T~~~   63 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRD--FLPRGSGIVTRRP   63 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC--CSCCCSSCSCSSC
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCC--cCCCCCCccccCC
Confidence            468999999999999999999642  2234444566655

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.49  E-value=0.039  Score=45.39  Aligned_cols=24  Identities=13%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~  115 (330)
                      .+..++|.|++|+|||+|+..++.
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            457999999999999999876653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.45  E-value=0.025  Score=49.30  Aligned_cols=22  Identities=18%  Similarity=0.534  Sum_probs=19.4

Q ss_pred             CCEEEEEcCCCccHHHHHHHHH
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLI  114 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~  114 (330)
                      +++-||+||.|||||+|.+.|.
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHH
Confidence            3588999999999999998884

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=92.44  E-value=0.0085  Score=47.86  Aligned_cols=22  Identities=18%  Similarity=0.398  Sum_probs=19.5

Q ss_pred             CEEEEEcCCCccHHHHHHHHHh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~  115 (330)
                      .+.||+||.|+|||||...|.-
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999998863

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.011  Score=41.45  Aligned_cols=28  Identities=25%  Similarity=0.643  Sum_probs=21.0

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|++.+ ++||.++.   +++.|+||+..+
T Consensus        32 ~v~vl~~~-~~Ww~~~~---~g~~G~vP~~yv   59 (69)
T d1uhfa_          32 EILVTQKD-GEWWTGSI---GDRSGIFPSNYV   59 (69)
T ss_dssp             EEEECEEE-TTEEEECS---TTCCEEECGGGC
T ss_pred             EEEEEEec-CCEEEEEE---CCcEEEEchhhE
Confidence            46788775 57999974   467899998664

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.06  E-value=0.049  Score=49.03  Aligned_cols=22  Identities=14%  Similarity=0.465  Sum_probs=19.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHH
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLI  114 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~  114 (330)
                      +..-||+||.|+|||+|...|.
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3578999999999999999874

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=91.89  E-value=0.05  Score=46.72  Aligned_cols=25  Identities=8%  Similarity=0.234  Sum_probs=21.3

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ++..++|.|+||+|||+++..|+-.
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            3579999999999999999888743

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=91.83  E-value=0.074  Score=46.31  Aligned_cols=40  Identities=23%  Similarity=0.261  Sum_probs=29.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD  135 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~  135 (330)
                      --|.|+|-+.||||||.+.|....+.  ...-|.||-.|-.|
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~--~~~ypf~ti~pn~g   42 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIE--AANYPFCTIEPNTG   42 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSS
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCc--cccCCCCCCCCceE
Confidence            46899999999999999999987653  33456788877766

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=91.70  E-value=0.036  Score=42.56  Aligned_cols=25  Identities=12%  Similarity=0.040  Sum_probs=20.2

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .+..+|.+|+|+|||+++-.++...
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~~~   32 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYAAQ   32 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHHTT
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHc
Confidence            4678999999999999887666543

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.61  E-value=0.029  Score=39.32  Aligned_cols=31  Identities=16%  Similarity=0.497  Sum_probs=22.5

Q ss_pred             CcEEEeCCCCC-ceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHN-WWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~-WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||+|+.+.|++ ||.++.. ..+..|++|+...
T Consensus        32 ~i~vl~~~~~~gW~~g~~~-~~g~~G~fP~nyV   63 (72)
T d1spka_          32 VLTLLIPEEKDGWLYGEHD-TTKARGWFPSSYT   63 (72)
T ss_dssp             EEEECCSSCBTTEEEEEET-TTCCEEEEEGGGC
T ss_pred             EEEEEEeecCCCeEEEEEC-CCCCEEEEchhhE
Confidence            57888776654 7777654 4578999998664

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.033  Score=39.24  Aligned_cols=28  Identities=21%  Similarity=0.725  Sum_probs=21.8

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||+|++++ ++||.++.   +++.|++|+...
T Consensus        34 ~i~vl~~~-~~ww~g~~---~g~~G~fP~~yv   61 (74)
T d1j3ta_          34 IITVLEQQ-ENWWFGEV---HGGRGWFPKSYV   61 (74)
T ss_dssp             EEEEEEEC-SSEEEEES---TTCCCEEEGGGE
T ss_pred             EEEEEEcc-CCeEEEEE---CCcEEEEchhhE
Confidence            57899885 58999875   367899998664

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=91.44  E-value=0.064  Score=43.40  Aligned_cols=25  Identities=16%  Similarity=0.343  Sum_probs=22.4

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      -.|.|.|+-|+||||+++-+++...
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEecCCCccHHHHHHHHHhhcc
Confidence            4788999999999999999998863

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.035  Score=41.96  Aligned_cols=32  Identities=22%  Similarity=0.408  Sum_probs=24.3

Q ss_pred             CcEEEeC---CCCCceeEEeCCC-----CCCceeeCChhH
Q psy933            1 MFQIISK---DDHNWWQARKDNV-----AGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~---~D~~WWQA~~~~~-----~~~~GlIPS~~~   32 (330)
                      |+.|+.+   ++++||.+...|.     +++.|++||...
T Consensus        45 ~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV   84 (106)
T d1i1ja_          45 VVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIV   84 (106)
T ss_dssp             EEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGE
T ss_pred             EEEEEEecCCCCcceEEEEecCccccccCCcccccccccE
Confidence            4678876   5688999987542     467899999764

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.019  Score=41.98  Aligned_cols=30  Identities=20%  Similarity=0.437  Sum_probs=22.4

Q ss_pred             CcEEEeCC--CCCceeEEeCCCCCCceeeCChhHH
Q psy933            1 MFQIISKD--DHNWWQARKDNVAGSAGLIPSPELQ   33 (330)
Q Consensus         1 iL~v~~~~--D~~WWQA~~~~~~~~~GlIPS~~~~   33 (330)
                      ||+|+.++  |.+||.++.   +++.|++|+..++
T Consensus        29 ~v~Vl~~~~~~~~w~~~~~---~g~~G~~P~~Yve   60 (93)
T d1uffa_          29 IIQVDEKTVGEPGWLYGSF---QGNFGWFPCNYVE   60 (93)
T ss_dssp             EEEECSSCCCSSSEEEEEE---TTEEEEEETTTEE
T ss_pred             EEEEEEeccCCCCEEEEEe---CCcEEEEchHHEE
Confidence            57899776  455777764   4678999998763

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.10  E-value=0.066  Score=45.71  Aligned_cols=24  Identities=17%  Similarity=0.254  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhh
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      +.+++|+|++|+|||+|+-.|+..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            479999999999999999877654

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=0.053  Score=40.17  Aligned_cols=32  Identities=19%  Similarity=0.323  Sum_probs=22.0

Q ss_pred             CcEEEeCCCCCceeEEeCCCCCCceeeCChhHH
Q psy933            1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQ   33 (330)
Q Consensus         1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~~   33 (330)
                      ||.|+++.|++||-.... .+++.|++|+..++
T Consensus        47 ~i~v~~~~~~~gW~~~~~-~~G~~G~~P~nyve   78 (96)
T d1wiea_          47 YLYVYGDMDEDGFYEGEL-LDGQRGLVPSNFVD   78 (96)
T ss_dssp             EEEEESSCCSSSCCEEEE-TTCCBCBCCTTSEE
T ss_pred             EEEEEEeeCCCceEEEEe-CCCCEEEEehHHeE
Confidence            578999888775543332 23578999997764

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.71  E-value=0.051  Score=36.33  Aligned_cols=28  Identities=32%  Similarity=0.903  Sum_probs=21.3

Q ss_pred             CcEEEeCCCC--CceeEEeCCCCCCceeeCChh
Q psy933            1 MFQIISKDDH--NWWQARKDNVAGSAGLIPSPE   31 (330)
Q Consensus         1 iL~v~~~~D~--~WWQA~~~~~~~~~GlIPS~~   31 (330)
                      +|.|+.+.|+  +||.++..   ++.|++|+..
T Consensus        25 ~v~vl~~~~~~~~W~~~~~~---g~~G~vP~~y   54 (58)
T d1oota_          25 VITILKKSDSQNDWWTGRVN---GREGIFPANY   54 (58)
T ss_dssp             EEEEEECCSCTTSEEEEEET---TEEEEEEGGG
T ss_pred             EEEEEEeecCCCCEEEEEEC---CcEEEEcHHH
Confidence            4788888764  68888753   5789999865

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=90.54  E-value=0.062  Score=47.09  Aligned_cols=23  Identities=30%  Similarity=0.657  Sum_probs=20.8

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      |.|+|+|+.|+|||||+.+|+-.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Confidence            68999999999999999999743

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.30  E-value=0.084  Score=36.65  Aligned_cols=30  Identities=30%  Similarity=0.850  Sum_probs=22.3

Q ss_pred             CcEEEeCC--CCCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKD--DHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~--D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ++.|+++.  |++||.++..  +++.|++|+...
T Consensus        30 ~i~vl~~~~~~~~Ww~~~~~--~G~~G~vP~~yv   61 (71)
T d1u5sa1          30 TMEVIEKPENDPEWWKCKNA--RGQVGLVPKNYV   61 (71)
T ss_dssp             CEEEEECCCTTTCEEEEEET--TTEEEEEETTSE
T ss_pred             EEEEEEcccCCCCeEEEEEC--CCCEEEEChHHE
Confidence            57888864  3589999753  357899998654

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.23  E-value=0.098  Score=45.76  Aligned_cols=23  Identities=13%  Similarity=0.549  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      +-||++|..++|||||++.|+..
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCC
Confidence            45899999999999999999964

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.22  E-value=0.59  Score=39.63  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHh
Q psy933           95 TLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~  115 (330)
                      -|+++|-.++|||||..+|+-
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~   28 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIY   28 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            589999999999999999974

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.04  E-value=0.061  Score=38.27  Aligned_cols=29  Identities=31%  Similarity=0.738  Sum_probs=22.3

Q ss_pred             CcEEEeCCC----CCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDD----HNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D----~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      +|+|+++.|    .+||.+++   .+..|++|+...
T Consensus        37 ~i~vl~~~~~~~~~~W~~g~~---~g~~G~vP~~yv   69 (79)
T d1uhca_          37 KLKILEFKDVTGNTEWWLAEV---NGKKGYVPSNYI   69 (79)
T ss_dssp             EEEEEESCCTTSCTTEEEEES---SSCEEEEEGGGE
T ss_pred             EEEEEEeecCCCCCCEEEEEE---CCCEEEEehhhE
Confidence            478898754    68999975   356899998764

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.02  E-value=0.059  Score=39.50  Aligned_cols=29  Identities=28%  Similarity=0.493  Sum_probs=23.1

Q ss_pred             CcEEEeCCC----CCceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDD----HNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D----~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |+.|+++.|    .+||-++.   +++.|++|+..+
T Consensus        41 ~v~vl~~~d~~~~~~Ww~~~~---~g~~G~~P~~yv   73 (92)
T d1ug1a_          41 LVGVIKKKDPMGSQNRWLIDN---GVTKGFVYSSFL   73 (92)
T ss_dssp             EEEEEESCCTTSCSSEEEEEC---SSSEEEEEGGGE
T ss_pred             EEEEEEcccccccCCceEEEe---cccEEEEEhhhc
Confidence            578999876    67999975   357899998765

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=89.11  E-value=0.11  Score=43.64  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      ++..++|.||++.|||.++..|++..
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHh
Confidence            55799999999999999999999875

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=88.37  E-value=0.13  Score=46.68  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=18.9

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHH
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLI  114 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~  114 (330)
                      .++..+|.||+|+|||+++..++
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHHHH
Confidence            35799999999999999875543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.29  E-value=0.2  Score=42.94  Aligned_cols=26  Identities=15%  Similarity=0.314  Sum_probs=21.9

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      ..||+|.|++|+||+.+++.|-..-+
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhcC
Confidence            36899999999999999998876543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=88.26  E-value=0.11  Score=46.77  Aligned_cols=24  Identities=17%  Similarity=0.331  Sum_probs=21.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|-|+-||||||+++.|.+...
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc
Confidence            588999999999999999988754

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.65  E-value=0.16  Score=39.14  Aligned_cols=26  Identities=23%  Similarity=0.319  Sum_probs=22.5

Q ss_pred             CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      +=.|.|.|-+|+||++|++.|...+-
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~~l~   31 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLSTFL   31 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            34899999999999999999987664

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=87.21  E-value=0.13  Score=46.36  Aligned_cols=24  Identities=25%  Similarity=0.560  Sum_probs=21.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|-|+-||||||+++.|.+.+.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            488999999999999999988765

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=87.04  E-value=0.11  Score=46.86  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhhCC
Q psy933           95 TLVLLGAHGVGRRHIKNTLINKFP  118 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~~~p  118 (330)
                      .|+|-|+-||||||+++.|.+.+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            488899999999999999987654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=86.63  E-value=0.23  Score=43.11  Aligned_cols=26  Identities=12%  Similarity=0.266  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKF  117 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~  117 (330)
                      .++.+.|.||+|+|||+|+-.++...
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHH
Confidence            56899999999999999998887653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=86.23  E-value=0.19  Score=45.72  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=19.1

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      +-+.|+|+||+|||++++.|+..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            56889999999999988766644

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.82  E-value=0.062  Score=37.51  Aligned_cols=29  Identities=24%  Similarity=0.586  Sum_probs=20.5

Q ss_pred             CcEEEeCCCCC-ceeEEeCCCCCCceeeCChhH
Q psy933            1 MFQIISKDDHN-WWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         1 iL~v~~~~D~~-WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      ||.|+++.|++ ||.++.   +++.|++|+...
T Consensus        34 ~i~v~~~~~~~~W~~g~~---~g~~G~~P~~yv   63 (72)
T d1ugva_          34 VFDNVHPSQEPGWLEGTL---NGKTGLIPENYV   63 (72)
T ss_dssp             EEBSCCBCSSTTEEEEES---SSCEEEEEGGGE
T ss_pred             EEEEeeccCCCCEEEEEe---CCCEEEEchHHE
Confidence            46778877665 666653   357899998764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=85.36  E-value=0.16  Score=44.08  Aligned_cols=17  Identities=18%  Similarity=0.528  Sum_probs=13.9

Q ss_pred             CEEEEEcCCCccHHHHH
Q psy933           94 KTLVLLGAHGVGRRHIK  110 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~  110 (330)
                      .+++|.||+|+||||.+
T Consensus        25 g~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SCEEEEECTTSCHHHHH
T ss_pred             CCEEEEecCCccHHHHH
Confidence            36788899999999754

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=85.00  E-value=0.22  Score=42.55  Aligned_cols=17  Identities=18%  Similarity=0.425  Sum_probs=14.4

Q ss_pred             CEEEEEcCCCccHHHHH
Q psy933           94 KTLVLLGAHGVGRRHIK  110 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~  110 (330)
                      .|++|+||+|+|||+++
T Consensus        15 ~~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             SEEEECCCTTSCHHHHH
T ss_pred             CCEEEEeeCCccHHHHH
Confidence            47888999999999753

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=84.79  E-value=0.35  Score=42.62  Aligned_cols=179  Identities=8%  Similarity=0.063  Sum_probs=88.8

Q ss_pred             cCCCCCEEEEEcCCCccHHHHHHHHHhh----CCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEe
Q psy933           89 PSFKRKTLVLLGAHGVGRRHIKNTLINK----FPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGT  164 (330)
Q Consensus        89 ~~~~~r~ivLvGpsGvGKstL~~~L~~~----~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~  164 (330)
                      |-.++-.+.|+|++|+|||+|+..+++.    +++......-..-|.   .|          ..+|..+.. +. +-...
T Consensus        39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~~~~~v~~~~~iger~---~e----------v~~~~~~~~-~~-vv~~t  103 (289)
T d1xpua3          39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERP---EE----------VTEMQRLVK-GE-VVAST  103 (289)
T ss_dssp             CCBTTCEEEEEECSSSSHHHHHHHHHHHHHHHCTTSEEEEEEEEECH---HH----------HHHHHHHCS-SE-EEEEE
T ss_pred             cccCCCeeeEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEeeceeH---HH----------HHhHHhhcc-eE-EEecc
Confidence            5557778999999999999999888863    332111111111110   00          022333322 11 22222


Q ss_pred             ecC--------ccccccHHHHHHHHHhCCeEEEEeCH--HHHHHHHhcCCCCEEEEEccCcccccc-CchHHHHHHHHHH
Q psy933          165 HED--------AMYGTKLETIRRIHQEGKIAILDVEP--QALKILRTGEFSPFVVFIAAPQLQNLS-DYDGSLEKLAKES  233 (330)
Q Consensus       165 ~~g--------~~YGts~~~i~~v~~~gk~~vldv~~--~~v~~L~~~~~~p~vIfI~pps~~~l~-~~~e~~~rl~~~~  233 (330)
                      ...        -++|++.+  +...++|+++++.+|-  .-++.++.-....-    .||+ .-.- ..-..+.++.+++
T Consensus       104 ~d~~~~~r~~~~~~a~~iA--Eyfrd~G~dVLli~Dsltr~A~A~rEis~~~g----e~p~-~gyp~~~~~~~~~l~era  176 (289)
T d1xpua3         104 FDEPASRHVQVAEMVIEKA--KRLVEHKKDVIILLDSITRLARAYNTVVPASG----KVLT-GGVDANALHRPKRFFGAA  176 (289)
T ss_dssp             TTSCHHHHHHHHHHHHHHH--HHHHTTTCEEEEEESCHHHHHHHHHHHSCC-------CBS-SSSBTTTTHHHHHHHHTC
T ss_pred             CCCchhHHHHHHHHHHHHH--HHHHHhccCceeecCcHHHHHHHHHHHHhhcc----CCCc-CCcChhhhhhhHHHHHhc
Confidence            222        12344333  3344789999999982  33444444221000    0121 0000 0112334555544


Q ss_pred             HHHHhhcccc----ceEEEe-cCCHHHH-HHHHHHHH-------HHhcCCCccccccccccchhhhhhhcc
Q psy933          234 DILKSAYEHF----FDLTVV-NNDIEET-IGILEKAI-------EELHTTPQWIPVSWLAKESDILKSAYE  291 (330)
Q Consensus       234 ~~ie~~~~~~----fD~vI~-N~dle~a-~~~L~~~i-------~~~~~~~~WvP~sw~~~~~~~~e~~y~  291 (330)
                      ..++.  ++-    +..++. +||+++. ...+..++       .++-..-.|-++.|+..-|+.++..++
T Consensus       177 ~~~~~--gGsit~~~~~~~~~~dd~~~pI~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~l~~  245 (289)
T d1xpua3         177 RNVEE--GGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTT  245 (289)
T ss_dssp             EECTT--SCEEEEEEEEECSSSCHHHHHHHHHHTTTSSEEEEBCHHHHTTTCSSCBCTTTCEESCGGGGSC
T ss_pred             cCCCC--CCcceEEEEEeecCCCccCchHHHHHhcccCeEEEEchhHHhCCCCCCCccCCcccccchhhCC
Confidence            33321  221    222333 3467654 35555542       346667788889999999998886655

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.60  E-value=0.37  Score=40.96  Aligned_cols=27  Identities=22%  Similarity=0.258  Sum_probs=21.5

Q ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           90 SFKRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        90 ~~~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      ..++|.|.++|.-||||||++--|+..
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~   31 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIR   31 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHH
Confidence            456789999999999999966555544

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=84.46  E-value=0.39  Score=41.64  Aligned_cols=28  Identities=29%  Similarity=0.528  Sum_probs=24.7

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINKFPD  119 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~  119 (330)
                      .+..++|.||.+.|||++++.|....++
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            4569999999999999999999988753

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.30  E-value=0.21  Score=42.47  Aligned_cols=29  Identities=17%  Similarity=0.448  Sum_probs=22.0

Q ss_pred             ccCCCCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           88 LPSFKRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        88 ~~~~~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      +....+|+|++.|--||||||++--|...
T Consensus        15 ~~~~~~~iii~sGKGGVGKTT~a~nLA~~   43 (279)
T d1ihua2          15 IARNEHGLIMLMGKGGVGKTTMAAAIAVR   43 (279)
T ss_dssp             HHTTSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             hhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34455689999999999999976555443

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=84.16  E-value=0.14  Score=38.22  Aligned_cols=19  Identities=32%  Similarity=0.160  Sum_probs=15.7

Q ss_pred             CCCEEEEEcCCCccHHHHH
Q psy933           92 KRKTLVLLGAHGVGRRHIK  110 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~  110 (330)
                      +++.++|.+|+|+|||..+
T Consensus         6 ~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTH
T ss_pred             cCCcEEEEcCCCCChhHHH
Confidence            3578899999999999554

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.26  E-value=0.37  Score=40.91  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=19.3

Q ss_pred             CCEEEEEcCCCccHHHHHHHHH
Q psy933           93 RKTLVLLGAHGVGRRHIKNTLI  114 (330)
Q Consensus        93 ~r~ivLvGpsGvGKstL~~~L~  114 (330)
                      .+.++|.||.++||||+++.+.
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHH
Confidence            4799999999999999988654

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=81.78  E-value=0.43  Score=38.27  Aligned_cols=21  Identities=14%  Similarity=0.324  Sum_probs=15.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHh
Q psy933           95 TLVLLGAHGVGRRHIKNTLIN  115 (330)
Q Consensus        95 ~ivLvGpsGvGKstL~~~L~~  115 (330)
                      .++|++|+|+|||.++-.++.
T Consensus        25 n~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHHHHHH
Confidence            467889999999986555543

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.04  E-value=0.54  Score=40.83  Aligned_cols=25  Identities=8%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .++.+.|.||+|+|||+|+-.++..
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~   83 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVAN   83 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHH
Confidence            4689999999999999999877754

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.81  E-value=0.42  Score=39.31  Aligned_cols=23  Identities=13%  Similarity=0.088  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCccHHHHHHHHHhh
Q psy933           94 KTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        94 r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .-++|.||+|+||++++..|.+.
T Consensus        16 ~~~l~~G~~g~gk~~~a~~l~~~   38 (198)
T d2gnoa2          16 ISILINGEDLSYPREVSLELPEY   38 (198)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999998864

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.14  E-value=0.11  Score=37.32  Aligned_cols=23  Identities=17%  Similarity=0.507  Sum_probs=17.7

Q ss_pred             CCCceeEEeCCCCCCceeeCChhH
Q psy933            9 DHNWWQARKDNVAGSAGLIPSPEL   32 (330)
Q Consensus         9 D~~WWQA~~~~~~~~~GlIPS~~~   32 (330)
                      |++||.++.. .++..|++|+...
T Consensus        50 ~~GW~~G~~~-~~g~~G~FP~nYV   72 (83)
T d1phta_          50 EIGWLNGYNE-TTGERGDFPGTYV   72 (83)
T ss_dssp             HHCEEEEEET-TTTEEEEEEGGGE
T ss_pred             CCCeEEEEEC-CCCcEeeEehhhE
Confidence            5679999874 3568999998653

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=80.12  E-value=0.6  Score=40.44  Aligned_cols=25  Identities=8%  Similarity=0.317  Sum_probs=22.2

Q ss_pred             CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933           92 KRKTLVLLGAHGVGRRHIKNTLINK  116 (330)
Q Consensus        92 ~~r~ivLvGpsGvGKstL~~~L~~~  116 (330)
                      .++.+.|.||+|+|||+|+-.++..
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEecCCccchHHHHHHHHHH
Confidence            5689999999999999999888765