Psyllid ID: psy9352

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTNL
cccccccEEEEEcccccccccHHHHHHHHcccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEcccEEEcccc
cccccccEEEEEcccccccccHHHHHHHHccccHcccccEEEEEEEcHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHHcccEEEEEcccEcccccc
MGGTPECAVHWIRkgmrlhdnpalLSAINYknekgqnillkplyildphfrkfmrvgpnRWRFLQQSLADLDQKFRALGSRlyvvqgkpeevfpDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVShtlyntnl
MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYvvqgkpeevfpdIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVkveqhvshtlyntnl
MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTNL
******CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV*********
****PEC**HWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTNL
MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTNL
****PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTNL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query146 2.2.26 [Sep-21-2011]
Q9R194 592 Cryptochrome-2 OS=Mus mus yes N/A 0.952 0.234 0.517 3e-36
Q923I8 594 Cryptochrome-2 OS=Rattus yes N/A 0.952 0.234 0.517 4e-36
Q49AN0 593 Cryptochrome-2 OS=Homo sa yes N/A 0.945 0.232 0.513 2e-35
Q5IZC5 620 Cryptochrome-1 OS=Erithac N/A N/A 0.890 0.209 0.514 9e-34
Q6ZZY0 620 Cryptochrome-1 OS=Sylvia N/A N/A 0.890 0.209 0.507 1e-33
P97784 606 Cryptochrome-1 OS=Mus mus no N/A 0.890 0.214 0.507 1e-33
Q8QG60 582 Cryptochrome-2 OS=Gallus yes N/A 0.904 0.226 0.507 1e-33
Q32Q86 588 Cryptochrome-1 OS=Rattus no N/A 0.890 0.221 0.507 2e-33
Q8WP19 586 Cryptochrome-1 OS=Macaca N/A N/A 0.890 0.221 0.507 2e-33
Q16526 586 Cryptochrome-1 OS=Homo sa no N/A 0.904 0.225 0.5 2e-33
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1 Back     alignment and function desciption
 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/145 (51%), Positives = 96/145 (66%), Gaps = 6/145 (4%)

Query: 1   MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
           MG     +VHW RKG+RLHDNPALL+A+     +G   + + +YILDP F     VG NR
Sbjct: 16  MGADGASSVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINR 69

Query: 61  WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
           WRFL QSL DLD   R L SRL+VV+G+P +VFP +FK W +  LT+EYD EP+ K+RD 
Sbjct: 70  WRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDA 129

Query: 121 LVEDMAKEYKVKVEQHVSHTLYNTN 145
            +  MAKE  V+V    SHTLY+ +
Sbjct: 130 AIMKMAKEAGVEVVTENSHTLYDLD 154
Blue light-dependent regulator of the circadian feedback loop. Inhibits CLOCK|NPAS2-ARNTL E box-mediated transcription. Acts, in conjunction with CRY2, in maintaining period length and circadian rhythmicity. Has no photolyase activity. Capable of translocating circadian clock core proteins such as PER proteins to the nucleus. May inhibit CLOCK|NPAS2-ARNTL transcriptional activity through stabilizing the unphosphorylated form of ARNTL.
Mus musculus (taxid: 10090)
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1 Back     alignment and function description
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2 Back     alignment and function description
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2 Back     alignment and function description
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1 Back     alignment and function description
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1 Back     alignment and function description
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2 Back     alignment and function description
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1 Back     alignment and function description
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query146
193702257 535 PREDICTED: cryptochrome-1-like [Acyrthos 0.965 0.263 0.624 1e-47
195148597204 GL19602 [Drosophila persimilis] gi|19410 1.0 0.715 0.527 1e-40
195433475 546 GK15094 [Drosophila willistoni] gi|19416 0.979 0.261 0.538 2e-40
195387030 541 GJ17431 [Drosophila virilis] gi|19414866 1.0 0.269 0.527 3e-40
158293404 556 AGAP008651-PA [Anopheles gambiae str. PE 0.945 0.248 0.543 4e-40
157115313 553 DNA photolyase [Aedes aegypti] gi|108883 0.979 0.258 0.531 5e-40
194759941 539 GF14557 [Drosophila ananassae] gi|190615 0.945 0.256 0.565 5e-40
194878837 540 GG21562 [Drosophila erecta] gi|190657323 0.945 0.255 0.557 7e-40
125986217 533 GA15376 [Drosophila pseudoobscura pseudo 0.945 0.258 0.543 2e-39
312378885 558 hypothetical protein AND_09443 [Anophele 0.945 0.247 0.514 3e-39
>gi|193702257|ref|XP_001946012.1| PREDICTED: cryptochrome-1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/141 (62%), Positives = 108/141 (76%)

Query: 6   ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
           E  VHW RKGMRLHDNPA   +   KN  G+   L+P+YILDP+FRK++R G NRWRFLQ
Sbjct: 11  ETTVHWFRKGMRLHDNPAFKLSCEAKNSNGERYKLRPIYILDPYFRKYIRAGANRWRFLQ 70

Query: 66  QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
           QSL DLD   R LG+RLYV++G P EVFPD+F  WN+KLLT+E D EPYA++RD  VE +
Sbjct: 71  QSLVDLDTTLRKLGTRLYVIRGLPHEVFPDLFAKWNVKLLTFELDTEPYARERDNQVEQL 130

Query: 126 AKEYKVKVEQHVSHTLYNTNL 146
           A+++ VKVEQ VSHT+YNT L
Sbjct: 131 ARKHGVKVEQKVSHTIYNTEL 151

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195148597|ref|XP_002015257.1| GL19602 [Drosophila persimilis] gi|194107210|gb|EDW29253.1| GL19602 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|195433475|ref|XP_002064736.1| GK15094 [Drosophila willistoni] gi|194160821|gb|EDW75722.1| GK15094 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|195387030|ref|XP_002052207.1| GJ17431 [Drosophila virilis] gi|194148664|gb|EDW64362.1| GJ17431 [Drosophila virilis] Back     alignment and taxonomy information
>gi|158293404|ref|XP_314748.3| AGAP008651-PA [Anopheles gambiae str. PEST] gi|157016689|gb|EAA10141.3| AGAP008651-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|157115313|ref|XP_001658195.1| DNA photolyase [Aedes aegypti] gi|108883518|gb|EAT47743.1| AAEL001175-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|194759941|ref|XP_001962202.1| GF14557 [Drosophila ananassae] gi|190615899|gb|EDV31423.1| GF14557 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|194878837|ref|XP_001974136.1| GG21562 [Drosophila erecta] gi|190657323|gb|EDV54536.1| GG21562 [Drosophila erecta] Back     alignment and taxonomy information
>gi|125986217|ref|XP_001356872.1| GA15376 [Drosophila pseudoobscura pseudoobscura] gi|54645198|gb|EAL33938.1| GA15376 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|312378885|gb|EFR25332.1| hypothetical protein AND_09443 [Anopheles darlingi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query146
FB|FBgn0016054 540 phr6-4 "(6-4)-photolyase" [Dro 0.945 0.255 0.550 1.6e-38
MGI|MGI:1270859 592 Cry2 "cryptochrome 2 (photolya 0.938 0.231 0.524 1.2e-33
RGD|620935 594 Cry2 "cryptochrome 2 (photolya 0.938 0.230 0.524 1.3e-33
UNIPROTKB|Q923I8 594 Cry2 "Cryptochrome-2" [Rattus 0.938 0.230 0.524 1.3e-33
ZFIN|ZDB-GENE-010426-6 598 cry3 "cryptochrome 3" [Danio r 0.890 0.217 0.544 2.2e-33
ZFIN|ZDB-GENE-010426-8 545 cry5 "cryptochrome 5" [Danio r 0.883 0.236 0.525 3e-33
UNIPROTKB|Q49AN0 593 CRY2 "Cryptochrome-2" [Homo sa 0.924 0.227 0.528 4.5e-33
UNIPROTKB|B4DZD6 614 CRY2 "Cryptochrome-2" [Homo sa 0.924 0.219 0.528 5.5e-33
UNIPROTKB|F1PNC9 593 CRY2 "Uncharacterized protein" 0.890 0.219 0.536 5.9e-33
UNIPROTKB|F1SHJ9 613 CRY2 "Uncharacterized protein" 0.931 0.221 0.507 1.2e-31
FB|FBgn0016054 phr6-4 "(6-4)-photolyase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 76/138 (55%), Positives = 97/138 (70%)

Query:     9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
             VHW RKG+RLHDNPAL       N       ++P++ILDP    +M+VG NRWRFLQQ+L
Sbjct:     9 VHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTL 68

Query:    69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
              DLD + R L SRL+VV+GKP EVFP IFK+W +++LT+E DIEPY+  RD  V+ +AK 
Sbjct:    69 EDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKA 128

Query:   129 YKVKVEQHVSHTLYNTNL 146
               V+VE H SHT+YN  L
Sbjct:   129 EGVRVETHCSHTIYNPEL 146
GO:0006281 "DNA repair" evidence=ISS
GO:0003914 "DNA (6-4) photolyase activity" evidence=ISS;NAS
MGI|MGI:1270859 Cry2 "cryptochrome 2 (photolyase-like)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620935 Cry2 "cryptochrome 2 (photolyase-like)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q923I8 Cry2 "Cryptochrome-2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010426-6 cry3 "cryptochrome 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010426-8 cry5 "cryptochrome 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q49AN0 CRY2 "Cryptochrome-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B4DZD6 CRY2 "Cryptochrome-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PNC9 CRY2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SHJ9 CRY2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9R194CRY2_MOUSENo assigned EC number0.51720.95200.2347yesN/A
Q8QG60CRY2_CHICKNo assigned EC number0.50720.90410.2268yesN/A
Q923I8CRY2_RATNo assigned EC number0.51720.95200.2340yesN/A
Q49AN0CRY2_HUMANNo assigned EC number0.51380.94520.2327yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
pfam00875164 pfam00875, DNA_photolyase, DNA photolyase 1e-43
COG0415 461 COG0415, PhrB, Deoxyribodipyrimidine photolyase [D 2e-21
TIGR02765 429 TIGR02765, crypto_DASH, cryptochrome, DASH family 1e-20
TIGR03556 471 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine 2e-18
TIGR02766 475 TIGR02766, crypt_chrom_pln, cryptochrome, plant fa 2e-05
>gnl|CDD|216167 pfam00875, DNA_photolyase, DNA photolyase Back     alignment and domain information 
 Score =  140 bits (355), Expect = 1e-43
 Identities = 51/135 (37%), Positives = 74/135 (54%), Gaps = 6/135 (4%)

Query: 8   AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
            + W R+ +RLHDNPAL +A     E G  ++  P++ILDP      ++G  R  FL +S
Sbjct: 1   VLVWFRRDLRLHDNPALAAAA----ESGAPVI--PVFILDPAQLGSHKLGAARRWFLLES 54

Query: 68  LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
           LADLD+    LG RL V +G P EV P++ K      + W  D EPY ++RD  V++  +
Sbjct: 55  LADLDESLAKLGIRLVVRRGDPAEVLPELAKELGASAVYWNRDYEPYERQRDAAVKEALR 114

Query: 128 EYKVKVEQHVSHTLY 142
           E  ++V     H L 
Sbjct: 115 EAGIEVHSFDDHLLV 129

This domain binds a light harvesting cofactor. Length = 164
>gnl|CDD|223492 COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|234002 TIGR02765, crypto_DASH, cryptochrome, DASH family Back     alignment and domain information
>gnl|CDD|132595 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>gnl|CDD|131813 TIGR02766, crypt_chrom_pln, cryptochrome, plant family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 146
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 100.0
TIGR02765 429 crypto_DASH cryptochrome, DASH family. Photolyases 100.0
TIGR03556 471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 100.0
TIGR02766 475 crypt_chrom_pln cryptochrome, plant family. At lea 100.0
TIGR00591 454 phr2 photolyase PhrII. All proteins in this family 100.0
PRK10674 472 deoxyribodipyrimidine photolyase; Provisional 100.0
COG0415 461 PhrB Deoxyribodipyrimidine photolyase [DNA replica 99.98
KOG0133|consensus 531 99.94
PF04244224 DPRP: Deoxyribodipyrimidine photo-lyase-related pr 97.76
PRK09982142 universal stress protein UspD; Provisional 96.8
PRK10116142 universal stress protein UspC; Provisional 96.43
TIGR00289222 conserved hypothetical protein TIGR00289. Homologo 96.26
cd01994194 Alpha_ANH_like_IV This is a subfamily of Adenine n 96.05
cd00293130 USP_Like Usp: Universal stress protein family. The 95.94
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 95.9
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 95.83
TIGR00290223 MJ0570_dom MJ0570-related uncharacterized domain. 95.83
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 95.82
PRK15005144 universal stress protein F; Provisional 95.57
COG3046 505 Uncharacterized protein related to deoxyribodipyri 95.23
PRK15456142 universal stress protein UspG; Provisional 94.66
COG2102223 Predicted ATPases of PP-loop superfamily [General 94.51
PF01902218 ATP_bind_4: ATP-binding region; InterPro: IPR00276 94.22
TIGR03679218 arCOG00187 arCOG00187 universal archaeal metal-bin 93.6
cd01987124 USP_OKCHK USP domain is located between the N-term 93.21
PRK10490 895 sensor protein KdpD; Provisional 92.74
PF1008797 DUF2325: Uncharacterized protein conserved in bact 92.54
PF00582140 Usp: Universal stress protein family; InterPro: IP 92.18
COG0560212 SerB Phosphoserine phosphatase [Amino acid transpo 91.92
TIGR01490202 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol 91.75
COG1139 459 Uncharacterized conserved protein containing a fer 91.68
PRK15118144 universal stress global response regulator UspA; P 91.3
COG2217713 ZntA Cation transport ATPase [Inorganic ion transp 90.84
PRK11175305 universal stress protein UspE; Provisional 89.97
PRK14719 360 bifunctional RNAse/5-amino-6-(5-phosphoribosylamin 89.14
PRK14010 673 potassium-transporting ATPase subunit B; Provision 88.47
PF1316795 GTP-bdg_N: GTP-binding GTPase N-terminal 88.3
PRK01122 679 potassium-transporting ATPase subunit B; Provision 88.03
TIGR01088141 aroQ 3-dehydroquinate dehydratase, type II. This m 87.53
PF00702215 Hydrolase: haloacid dehalogenase-like hydrolase; I 87.32
TIGR01497 675 kdpB K+-transporting ATPase, B subunit. One sequen 87.12
cd06294 270 PBP1_ycjW_transcription_regulator_like Ligand-bind 85.14
PF13419176 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 85.05
PRK11175 305 universal stress protein UspE; Provisional 84.99
cd06279 283 PBP1_LacI_like_3 Ligand-binding domain of uncharac 84.95
TIGR00338219 serB phosphoserine phosphatase SerB. Phosphoserine 84.71
TIGR00273 432 iron-sulfur cluster-binding protein. Members of th 83.53
PRK10517 902 magnesium-transporting ATPase MgtA; Provisional 83.18
PF05368 233 NmrA: NmrA-like family; InterPro: IPR008030 NmrA i 83.17
TIGR01488177 HAD-SF-IB Haloacid Dehalogenase superfamily, subfa 82.76
PRK09484183 3-deoxy-D-manno-octulosonate 8-phosphate phosphata 82.71
TIGR01428198 HAD_type_II 2-haloalkanoic acid dehalogenase, type 82.49
PRK15122 903 magnesium-transporting ATPase; Provisional 82.24
PF08218182 Citrate_ly_lig: Citrate lyase ligase C-terminal do 82.06
COG2179175 Predicted hydrolase of the HAD superfamily [Genera 81.9
TIGR01491201 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa 81.84
PF13727175 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B. 81.66
PRK09590104 celB cellobiose phosphotransferase system IIB comp 81.39
TIGR01512536 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo 81.14
PF12710192 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P 81.12
cd06277 268 PBP1_LacI_like_1 Ligand-binding domain of uncharac 80.61
TIGR01525556 ATPase-IB_hvy heavy metal translocating P-type ATP 80.56
cd01427139 HAD_like Haloacid dehalogenase-like hydrolases. Th 80.45
TIGR01670154 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho 80.44
TIGR01524 867 ATPase-IIIB_Mg magnesium-translocating P-type ATPa 80.3
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information 
Probab=100.00  E-value=4.2e-40  Score=237.22  Aligned_cols=132  Identities=37%  Similarity=0.681  Sum_probs=113.2

Q ss_pred             EEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEEC
Q psy9352           8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQG   87 (146)
Q Consensus         8 ~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g   87 (146)
                      +|||||+|||++||+||++|++.+.+      |+||||+||........|++|.+|+++||.+|+++|+++|++|+++.|
T Consensus         1 ~l~Wfr~DLRl~DN~aL~~A~~~~~~------v~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g   74 (165)
T PF00875_consen    1 VLVWFRRDLRLHDNPALHAAAQNGDP------VLPVFVFDPEEFHPYRIGPRRRRFLLESLADLQESLRKLGIPLLVLRG   74 (165)
T ss_dssp             EEEEESS--SSTT-HHHHHHHHTTSE------EEEEEEE-HHGGTTCSSCHHHHHHHHHHHHHHHHHHHHTTS-EEEEES
T ss_pred             CEEEEcCCCchhhhHHHHHHHHcCCC------eEEEEEecccccccccCcchHHHHHHHHHHHHHHHHHhcCcceEEEec
Confidence            69999999999999999999988776      999999999833222459999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeCC
Q psy9352          88 KPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN  145 (146)
Q Consensus        88 ~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p~  145 (146)
                      ++.++|++|+++++|++||+|++|++++++||+.+++.|++.||.++.+++++|++|+
T Consensus        75 ~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~~L~~~~  132 (165)
T PF00875_consen   75 DPEEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFDDHTLVPPD  132 (165)
T ss_dssp             SHHHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE--SSSS-HH
T ss_pred             chHHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEECCcEEEecc
Confidence            9999999999999999999999999999999999999999999999999999999985

; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>TIGR02766 crypt_chrom_pln cryptochrome, plant family Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>PRK10674 deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0133|consensus Back     alignment and domain information
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>TIGR00289 conserved hypothetical protein TIGR00289 Back     alignment and domain information
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only] Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] Back     alignment and domain information
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal Back     alignment and domain information
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490 Back     alignment and domain information
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion] Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>PRK14010 potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal Back     alignment and domain information
>PRK01122 potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II Back     alignment and domain information
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase) Back     alignment and domain information
>TIGR01497 kdpB K+-transporting ATPase, B subunit Back     alignment and domain information
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors Back     alignment and domain information
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>TIGR00338 serB phosphoserine phosphatase SerB Back     alignment and domain information
>TIGR00273 iron-sulfur cluster-binding protein Back     alignment and domain information
>PRK10517 magnesium-transporting ATPase MgtA; Provisional Back     alignment and domain information
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA Back     alignment and domain information
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like Back     alignment and domain information
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional Back     alignment and domain information
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II Back     alignment and domain information
>PRK15122 magnesium-transporting ATPase; Provisional Back     alignment and domain information
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6 Back     alignment and domain information
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only] Back     alignment and domain information
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal Back     alignment and domain information
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B Back     alignment and domain information
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed Back     alignment and domain information
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Back     alignment and domain information
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B Back     alignment and domain information
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase Back     alignment and domain information
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases Back     alignment and domain information
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family Back     alignment and domain information
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
3cvu_A 543 Drosophila Melanogaster (6-4) Photolyase Bound To D 5e-42
3cvx_A 543 Drosophila Melanogaster (6-4) Photolyase H369m Muta 5e-42
3cvw_A 543 Drosophila Melanogaster (6-4) Photolyase H365n Muta 5e-42
3fy4_A 537 (6-4) Photolyase Crystal Structure Length = 537 1e-24
4gu5_A 539 Structure Of Full-Length Drosophila Cryptochrome Le 3e-19
1tez_A 474 Complex Between Dna And The Dna Photolyase From Ana 4e-15
1owl_A 484 Structure Of Apophotolyase From Anacystis Nidulans 4e-15
1np7_A 489 Crystal Structure Analysis Of Synechocystis Sp. Pcc 9e-10
2ijg_X 526 Crystal Structure Of Cryptochrome 3 From Arabidopsi 3e-08
2vtb_B 525 Structure Of Cryptochrome 3 - Dna Complex Length = 3e-08
2j4d_A 525 Cryptochrome 3 From Arabidopsis Thaliana Length = 5 3e-08
1iqr_A 420 Crystal Structure Of Dna Photolyase From Thermus Th 2e-07
2e0i_A 440 Crystal Structure Of Archaeal Photolyase From Sulfo 4e-04
1u3c_A 509 Crystal Structure Of The Phr Domain Of Cryptochrome 5e-04
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (419), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 76/138 (55%), Positives = 97/138 (70%)
Query: 9   VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
           VHW RKG+RLHDNPAL       N       ++P++ILDP    +M+VG NRWRFLQQ+L
Sbjct: 32  VHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTL 91
Query: 69  ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
            DLD + R L SRL+VV+GKP EVFP IFK+W +++LT+E DIEPY+  RD  V+ +AK 
Sbjct: 92  EDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKA 151
Query: 129 YKVKVEQHVSHTLYNTNL 146
             V+VE H SHT+YN  L
Sbjct: 152 EGVRVETHCSHTIYNPEL 169
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant Bound To Ds Dna With A T-T (6-4) Photolesion And Cofactor F0 Length = 543 Back     alignment and structure
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure Length = 537 Back     alignment and structure
>pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome Length = 539 Back     alignment and structure
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans Length = 474 Back     alignment and structure
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans Length = 484 Back     alignment and structure
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803 Cryptochrome Length = 489 Back     alignment and structure
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis Thaliana Length = 526 Back     alignment and structure
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex Length = 525 Back     alignment and structure
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana Length = 525 Back     alignment and structure
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus Thermophilus Length = 420 Back     alignment and structure
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor Length = 440 Back     alignment and structure
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana Length = 509 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
2wq7_A 543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 1e-51
3fy4_A 537 6-4 photolyase; DNA repair, clock cryptochrome; HE 1e-46
3tvs_A 538 Cryptochrome-1; circadian clock light entrainment, 2e-46
1np7_A 489 DNA photolyase; protein with FAD cofactor; HET: DN 1e-42
2j4d_A 525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 5e-42
1owl_A 484 Photolyase, deoxyribodipyrimidine photolyase; DNA 6e-30
1u3d_A 509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 6e-27
2j07_A 420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 2e-26
2e0i_A 440 432AA long hypothetical deoxyribodipyrimidine PHO; 3e-26
2xry_A 482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 7e-26
1dnp_A 471 DNA photolyase; DNA repair, electron transfer, exc 5e-25
3umv_A 506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 6e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Length = 543 Back     alignment and structure
 Score =  170 bits (433), Expect = 1e-51
 Identities = 76/143 (53%), Positives = 97/143 (67%)

Query: 1   MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
           M       VHW RKG+RLHDNPAL       N       ++P++ILDP    +M+VG NR
Sbjct: 24  MDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANR 83

Query: 61  WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
           WRFLQQ+L DLD + R L SRL+VV+GKP EVFP IFK+W +++LT+E DIEPY+  RD 
Sbjct: 84  WRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDA 143

Query: 121 LVEDMAKEYKVKVEQHVSHTLYN 143
            V+ +AK   V+VE H SHT+YN
Sbjct: 144 AVQKLAKAEGVRVETHCSHTIYN 166
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Length = 537 Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Length = 489 Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Length = 525 Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Length = 484 Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Length = 509 Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Length = 420 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Length = 440 Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Length = 482 Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Length = 471 Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Length = 506 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query146
3fy4_A 537 6-4 photolyase; DNA repair, clock cryptochrome; HE 100.0
3tvs_A 538 Cryptochrome-1; circadian clock light entrainment, 100.0
1np7_A 489 DNA photolyase; protein with FAD cofactor; HET: DN 100.0
2wq7_A 543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 100.0
1owl_A 484 Photolyase, deoxyribodipyrimidine photolyase; DNA 100.0
2e0i_A 440 432AA long hypothetical deoxyribodipyrimidine PHO; 100.0
3umv_A 506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 100.0
2j4d_A 525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 100.0
1dnp_A 471 DNA photolyase; DNA repair, electron transfer, exc 100.0
1u3d_A 509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 100.0
2j07_A 420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 100.0
2xry_A 482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 99.97
3zxs_A 522 Cryptochrome B, rscryb; lyase, cryPro, lumazine, i 98.99
3s3t_A146 Nucleotide-binding protein, universal stress PROT 96.33
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 96.26
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 96.08
3fdx_A143 Putative filament protein / universal stress PROT; 96.07
3tnj_A150 Universal stress protein (USP); structural genomic 96.01
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 95.87
3dlo_A155 Universal stress protein; unknown function, struct 95.51
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 95.12
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 94.74
2z08_A137 Universal stress protein family; uncharacterized c 94.23
3fg9_A156 Protein of universal stress protein USPA family; A 94.15
1q77_A138 Hypothetical protein AQ_178; structural genomics, 94.06
3loq_A294 Universal stress protein; structural genomics, PSI 93.97
3rjz_A 237 N-type ATP pyrophosphatase superfamily; structural 93.32
3loq_A 294 Universal stress protein; structural genomics, PSI 93.19
3mt0_A290 Uncharacterized protein PA1789; structural genomic 93.06
3olq_A319 Universal stress protein E; structural genomics, P 92.36
3fvv_A232 Uncharacterized protein; unknown function, structu 92.18
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 91.8
3olq_A 319 Universal stress protein E; structural genomics, P 90.14
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 89.75
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 89.27
2pr7_A137 Haloacid dehalogenase/epoxide hydrolase family; NP 87.75
3n07_A195 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; 85.47
3h75_A 350 Periplasmic sugar-binding domain protein; protein 85.43
3kzx_A231 HAD-superfamily hydrolase, subfamily IA, variant; 84.2
3mmz_A176 Putative HAD family hydrolase; structural genomics 84.09
3e8m_A164 Acylneuraminate cytidylyltransferase; 2-keto-3-deo 83.45
3n1u_A191 Hydrolase, HAD superfamily, subfamily III A; struc 83.39
3ij5_A211 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; 83.3
3qk7_A 294 Transcriptional regulators; structural genomics, N 83.11
3mn1_A189 Probable YRBI family phosphatase; structural genom 82.4
3gv0_A 288 Transcriptional regulator, LACI family; transcript 81.99
2iel_A138 Hypothetical protein TT0030; TT0030,thermus thermo 81.34
2r8e_A188 3-deoxy-D-manno-octulosonate 8-phosphate phosphata 80.88
3ab8_A 268 Putative uncharacterized protein TTHA0350; tandem- 80.2
3nvb_A387 Uncharacterized protein; protein FKBH, protein fkb 80.19
3l49_A 291 ABC sugar (ribose) transporter, periplasmic substr 80.03
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=7.3e-38  Score=259.63  Aligned_cols=138  Identities=43%  Similarity=0.727  Sum_probs=127.2

Q ss_pred             CCCCCceEEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCC---------CCChhhHHHHHHHHHHH
Q psy9352           1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM---------RVGPNRWRFLQQSLADL   71 (146)
Q Consensus         1 ~~~~~~~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~---------~~~~~r~~Fl~~sL~~L   71 (146)
                      |. +++++|||||+|||++|||||.+|++.+.+      |+||||+||.++..+         ..|++|.+||++||.+|
T Consensus         1 ~~-~~~~~lvWFRrDLRl~DN~AL~~A~~~~~~------vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L   73 (537)
T 3fy4_A            1 MA-TGSGSLIWFRKGLRVHDNPALEYASKGSEF------MYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDL   73 (537)
T ss_dssp             ----CCEEEEEESSCCCSTTCHHHHHHHTTCSC------EEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHH
T ss_pred             CC-CCCcEEEEeCCCcccchhHHHHHHHhcCCC------EEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHH
Confidence            54 446899999999999999999999987655      999999999877532         47899999999999999


Q ss_pred             HHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeCC
Q psy9352          72 DQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN  145 (146)
Q Consensus        72 ~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p~  145 (146)
                      +++|+++|++|+|+.|++.++|++|+++++|++||+|++|+|++++||+.|++.|++.||+++++++++|++|+
T Consensus        74 ~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI~~~~~~~~~L~~p~  147 (537)
T 3fy4_A           74 DSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPA  147 (537)
T ss_dssp             HHHHHHTTCCCEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHH
T ss_pred             HHHHHHcCCceEEEECCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCCeEEEecCCEEEchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999985
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis} Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae} Back     alignment and structure
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} Back     alignment and structure
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis} Back     alignment and structure
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis} Back     alignment and structure
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A* Back     alignment and structure
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0 Back     alignment and structure
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis} Back     alignment and structure
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis} Back     alignment and structure
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A Back     alignment and structure
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str} Back     alignment and structure
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4 Back     alignment and structure
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A* Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 146
d1u3da2185 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Ara 3e-14
d1np7a2204 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp. 2e-12
d1owla2202 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus e 2e-11
d1dnpa2200 c.28.1.1 (A:1-200) DNA photolyase {Escherichia col 2e-10
d2j07a2170 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermop 1e-08
d1zpva183 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Strepto 0.002
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 185 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cryptochrome/photolyase, N-terminal domain
superfamily: Cryptochrome/photolyase, N-terminal domain
family: Cryptochrome/photolyase, N-terminal domain
domain: Cryptochrome
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 64.2 bits (155), Expect = 3e-14
 Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 8/138 (5%)

Query: 7   CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
           C++ W R+ +R+ DNPAL +A+     +   ++   L++  P        G     +L+ 
Sbjct: 1   CSIVWFRRDLRVEDNPALAAAV-----RAGPVI--ALFVWAPEEEGHYHPGRVSRWWLKN 53

Query: 67  SLADLDQKFRALGSRLYVVQG-KPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
           SLA LD   R+LG+ L   +         D+ K+     + + +  +P +  RD   +D+
Sbjct: 54  SLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDV 113

Query: 126 AKEYKVKVEQHVSHTLYN 143
                + V    +  LY 
Sbjct: 114 LTAQGIAVRSFNADLLYE 131
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 204 Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 202 Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Length = 170 Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Length = 83 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query146
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 100.0
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 100.0
d1u3da2185 Cryptochrome {Thale cress (Arabidopsis thaliana) [ 100.0
d1dnpa2200 DNA photolyase {Escherichia coli [TaxId: 562]} 100.0
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 100.0
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 96.56
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 95.78
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 95.71
d2d13a1226 Hypothetical protein PH1257 {Archaeon Pyrococcus h 95.45
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 94.78
d2b8ea1135 Cation-transporting ATPase {Archaeon Archaeoglobus 94.37
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 93.79
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 93.24
d2ioja1120 Hypothetical protein AF1212 {Archaeoglobus fulgidu 87.93
d1b43a2219 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyr 84.6
d1nnla_217 Phosphoserine phosphatase {Human (Homo sapiens) [T 84.43
d1wpga2168 Calcium ATPase, catalytic domain P {Rabbit (Orycto 83.37
d1te2a_218 Phosphatase YniC {Escherichia coli [TaxId: 562]} 81.97
d2c4va1158 Type II 3-dehydroquinate dehydratase {Helicobacter 81.36
d2bdua1291 Cytosolic 5'-nucleotidase III {Mouse (Mus musculus 80.85
d2dria_ 271 D-ribose-binding protein {Escherichia coli, strain 80.44
d1vp8a_190 Hypothetical protein AF0103 {Archaeoglobus fulgidu 80.06
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cryptochrome/photolyase, N-terminal domain
superfamily: Cryptochrome/photolyase, N-terminal domain
family: Cryptochrome/photolyase, N-terminal domain
domain: Cryptochrome
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

Probab=100.00  E-value=1.9e-42  Score=254.20  Aligned_cols=140  Identities=26%  Similarity=0.414  Sum_probs=131.6

Q ss_pred             CCCCCceEEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCC-----CCChhhHHHHHHHHHHHHHHH
Q psy9352           1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-----RVGPNRWRFLQQSLADLDQKF   75 (146)
Q Consensus         1 ~~~~~~~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~-----~~~~~r~~Fl~~sL~~L~~~L   75 (146)
                      |.-++.++|||||+|||++||+||.+|++.+++      |+||||+||..+..+     ..|++|.+|+.+||.+|+++|
T Consensus         1 m~~~p~~~lvWfr~DLRl~DN~aL~~A~~~~~~------vi~vyi~dp~~~~~~~~~~~~~~~~r~~fl~~sL~~L~~~L   74 (204)
T d1np7a2           1 MKHVPPTVLVWFRNDLRLHDHEPLHRALKSGLA------ITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESL   74 (204)
T ss_dssp             CCCCCCEEEEEESSCCCSTTCHHHHHHHHTTSE------EEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEeCCCCccccHHHHHHHHhcCCc------EEEEEEECchHhcCcccccccccHHHHHHHHHHHHHHHHHH
Confidence            666777899999999999999999999987766      999999999887543     478999999999999999999


Q ss_pred             HhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeCCC
Q psy9352          76 RALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTNL  146 (146)
Q Consensus        76 ~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p~~  146 (146)
                      +++|++|+|+.|++.++|++|+++++|++||+|++|++++++||+.|.+.|++.||.++.+++++|++|++
T Consensus        75 ~~~g~~L~v~~G~~~~~l~~l~~~~~i~~V~~n~~~~~~e~~rd~~v~~~l~~~~i~~~~~~~~~L~~p~~  145 (204)
T d1np7a2          75 QKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPED  145 (204)
T ss_dssp             HHTTCCEEEEESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGG
T ss_pred             HhccchhhhhhhhhHHHHHHHHHHhhhhheeeeccccHHHHHHHHHHhhhhccceeeeEeccCccccChhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999864
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ioja1 c.98.2.2 (A:206-325) Hypothetical protein AF1212 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c4va1 c.23.13.1 (A:1-158) Type II 3-dehydroquinate dehydratase {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]} Back     information, alignment and structure
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure