Psyllid ID: psy9354

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MSSGMSGRYVVASPVEYSPEPLPATVKYAKKRSSAGLGDEGGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDHNTASSEQEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYNDGLLAEEDDSMLLDDESGSFDSSQITIETVMPEEVMSVSGSEGESDLSSDIDHVEVH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHccccccccccccccccHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccEEEEEEcccccEEEEEccccEEEEccHHHHHHHccccccccccccHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHcHHHEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcEEEEEEccccEEEEEEEccccEEEEEEcccccEEccHHHHHHHHccccccccccccHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcc
Coil and Loop (DISEMBL)
mssgmsgryvvaspveyspeplpaTVKYAKkrssaglgdeggaykRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSedhntasseQEKKEIKwlglptnslqESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNidsekihgepapssaiqlpflivstdkktvidcsmsndkteyLFVFDNKFEIHDDIEILKRMglgmgldkgewtEEDLQEAKRLVAPCMEKYVNQIAyndgllaeeddsmllddesgsfdssqitietvmpeevmsvsgsegesdlssdidhvevh
Flexible Loop (DISEMBL)
mssgmsgryvvaspveyspeplPATVKYAKkrssaglgdeggaykrsrekaskglrhfsmkvcekvrrkgvTTYNEVADELVQEFsedhntasseqekkeikwlglptnsLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHgepapssaiqlpFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYNDGLLAEEDDSMLLDDESGSFDSSQITIETVMPEEVMSVsgsegesdlssdidhvevh
Low Complexity Region (SEG)
MSSGMSGRYVVASPVEYSPEPLPATVKYAKKRSSAGLGDEGGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDHNTASSEQEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDlllqqislkkliqkniDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYNDGllaeeddsmllddesgsFDSSQITIETVMPeevmsvsgsegesdlssdIDHVEVH
Disordered region (IsUnstruct)
*********************************************************FSMKVCEKVRRKGVTTYNEVAD***********************WL*******************LIQRINQKTRHLHDLLLQQISLKKLIQKNI*************AIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYNDGLLA****************************************************
Disordered Region (DISOPRED)
**********************************************************SMKVCEKVRRKGVTTYNEVADELVQEF***************IKWLGLPTNSLQ*******************TRHLHDLLLQQISLKKLI******************IQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGL****************AKRLVAPCMEKYVNQIAY**********************************************************
Disordered Region (DISEMBL)
MSSGMSGRYVVASPVEYSPEPLPATVKYAKKRSSAGLGDEGGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEF**************EIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYNDGLLAEEDDSMLLDDESGSFDSSQITIETVMPEE***********************
Disordered Region (DISPRO)
****************************************************KGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDHNTASSEQEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYN*********************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSGMSGRYVVASPVEYSPEPLPATVKYAKKRSSAGLGDEGGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDHNTASSEQEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYNDGLLAEEDDSMLLDDESGSFDSSQITIETVMPEEVMSVSGSEGESDLSSDIDHVEVH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	308	2.2.26 [Sep-21-2011]
Q14186	410	Transcription factor Dp-1	yes	N/A	0.678	0.509	0.531	6e-63
Q08639	410	Transcription factor Dp-1	yes	N/A	0.678	0.509	0.527	8e-63
Q17QZ4	410	Transcription factor Dp-1	yes	N/A	0.678	0.509	0.527	5e-62
Q14188	446	Transcription factor Dp-2	no	N/A	0.853	0.589	0.458	1e-59
Q24318	445	Transcription factor Dp O	yes	N/A	0.727	0.503	0.454	1e-53
Q64163	446	Transcription factor Dp-2	no	N/A	0.853	0.589	0.438	1e-52
Q5H9I0	405	Transcription factor Dp f	no	N/A	0.795	0.604	0.407	1e-48
Q22703	598	Transcription factor dpl-	yes	N/A	0.642	0.331	0.383	3e-40
Q9FNY2	385	Transcription factor-like	yes	N/A	0.574	0.459	0.373	7e-27
Q9FNY3	292	Transcription factor-like	no	N/A	0.561	0.592	0.276	3e-15

>sp|Q14186|TFDP1_HUMAN Transcription factor Dp-1 OS=Homo sapiens GN=TFDP1 PE=1 SV=1

 Score =  241 bits (614), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 126/237 (53%), Positives = 158/237 (66%), Gaps = 28/237 (11%)

Query: 41  GGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFS--EDH---NTASSE 95
            G   R  EK  KGLRHFSMKVCEKV+RKG T+YNEVADELV EFS  ++H   N ++ +
Sbjct: 102 AGKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHILPNESAYD 161

Query: 96  Q----------------------EKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTR 133
           Q                      EKKEIKW+GLPTNS QE  NL  ER++ ++RI QK  
Sbjct: 162 QKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQS 221

Query: 134 HLHDLLLQQISLKKLIQKNIDSEKIHGEPAP-SSAIQLPFLIVSTDKKTVIDCSMSNDKT 192
            L +L+LQQI+ K L+Q+N  +E+    P P +S I LPF+IV+T KKTVIDCS+SNDK 
Sbjct: 222 QLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKF 281

Query: 193 EYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
           EYLF FDN FEIHDDIE+LKRMG+  GL+ G  + EDL+ A+ LV   +E YV ++A
Sbjct: 282 EYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDLKMARSLVPKALEPYVTEMA 338

Can stimulate E2F-dependent transcription. Binds DNA cooperatively with E2F family members through the E2 recognition site, 5'-TTTC[CG]CGC-3', found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DP2/E2F complex functions in the control of cell-cycle progression from G1 to S phase. The E2F-1/DP complex appears to mediate both cell proliferation and apoptosis.
Homo sapiens (taxid: 9606)

>sp|Q08639|TFDP1_MOUSE Transcription factor Dp-1 OS=Mus musculus GN=Tfdp1 PE=1 SV=1

 Score =  240 bits (613), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 125/237 (52%), Positives = 158/237 (66%), Gaps = 28/237 (11%)

Query: 41  GGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFS--EDH---NTASSE 95
            G   R  EK  KGLRHFSMKVCEKV+RKG T+YNEVADELV EFS  ++H   N ++ +
Sbjct: 102 AGKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHILPNESAYD 161

Query: 96  Q----------------------EKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTR 133
           Q                      EKKEIKW+GLPTNS QE  NL  ER++ ++RI QK  
Sbjct: 162 QKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQS 221

Query: 134 HLHDLLLQQISLKKLIQKNIDSEK-IHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKT 192
            L +L+LQQI+ K L+Q+N  +E+     P P+S I LPF+IV+T +KTVIDCS+SNDK 
Sbjct: 222 QLQELILQQIAFKNLVQRNRQAEQQARRPPPPNSVIHLPFIIVNTSRKTVIDCSISNDKF 281

Query: 193 EYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
           EYLF FDN FEIHDDIE+LKRMG+  GL+ G  + EDL+ A+ LV   +E YV ++A
Sbjct: 282 EYLFNFDNTFEIHDDIEVLKRMGMACGLESGNCSAEDLKVARSLVPKALEPYVTEMA 338

Can stimulate E2F-dependent transcription. Binds DNA cooperatively with E2F family members through the E2 recognition site, 5'-TTTC[CG]CGC-3', found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DP2/E2F complex functions in the control of cell-cycle progression from G1 to S phase. The E2F-1/DP complex appears to mediate both cell proliferation and apoptosis.

Mus musculus (taxid: 10090)

>sp|Q17QZ4|TFDP1_BOVIN Transcription factor Dp-1 OS=Bos taurus GN=TFDP1 PE=2 SV=1

 Score =  238 bits (607), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 125/237 (52%), Positives = 154/237 (64%), Gaps = 28/237 (11%)

Query: 41  GGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSE-DHNTASSE---- 95
            G   R  EK  KGLRHFSMKVCEKV+RKG T+YNEVADELV EFS  D +   SE    
Sbjct: 102 AGKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADSHILPSESAYD 161

Query: 96  ----------------------QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTR 133
                                 +EKKEIKW+GLPTNS QE  +L  ER++ ++RI QK  
Sbjct: 162 QKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQSLEVERQRRLERIKQKQS 221

Query: 134 HLHDLLLQQISLKKLIQKNIDSEKIHGEPAP-SSAIQLPFLIVSTDKKTVIDCSMSNDKT 192
            L +L+LQQI+ K L+Q+N   E+    P P +S I LPF+IV+T KKTVIDCS+SNDK 
Sbjct: 222 QLQELILQQIAFKNLVQRNRQVEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKF 281

Query: 193 EYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
           EYLF FDN FEIHDDIE+LKRMG+  GL+ G  + EDL+ A+ LV   +E YV ++A
Sbjct: 282 EYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSPEDLRVARSLVPKALEPYVTEMA 338

Can stimulate E2F-dependent transcription. Binds DNA cooperatively with E2F family members through the E2 recognition site, 5'-TTTC[CG]CGC-3', found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DP2/E2F complex functions in the control of cell-cycle progression from G1 to S phase. The E2F-1/DP complex appears to mediate both cell proliferation and apoptosis.

Bos taurus (taxid: 9913)

>sp|Q14188|TFDP2_HUMAN Transcription factor Dp-2 OS=Homo sapiens GN=TFDP2 PE=1 SV=2

 Score =  230 bits (586), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 142/310 (45%), Positives = 190/310 (61%), Gaps = 47/310 (15%)

Query: 6   SGRYVVASPVEYSPEPLPAT----------VKYAKKRSSAGLGDEGGAYKRSR--EKASK 53
           SG  ++ SP  Y+P P   T          V   +KR+   +  +    KRS+  +K  K
Sbjct: 73  SGSVLIGSP--YTPAPAMVTQTHIAEATGWVPGDRKRARKFIDSDFSESKRSKKGDKNGK 130

Query: 54  GLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDHNTASSE------------------ 95
           GLRHFSMKVCEKV+RKG T+YNEVADELV EF+  +N  +++                  
Sbjct: 131 GLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNV 190

Query: 96  --------QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKK 147
                   +EKKEIKW+GLPTNS QE  NL  E+++ I+RI QK   L +LLLQQI+ K 
Sbjct: 191 LMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKN 250

Query: 148 LIQKNIDSEKIH-GEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHD 206
           L+Q+N  +E+ + G PA +S IQLPF+I++T +KTVIDCS+S+DK EYLF FDN FEIHD
Sbjct: 251 LVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFEIHD 310

Query: 207 DIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA-----YNDGLLAEEDDS 261
           DIE+LKRMG+  GL+ G+ + EDL+ AK LV   +E Y+  I+      N GLL     S
Sbjct: 311 DIEVLKRMGMSFGLESGKCSLEDLKLAKSLVPKALEGYITDISTGPSWLNQGLLLNSTQS 370

Query: 262 ML-LDDESGS 270
           +  LD  +G+
Sbjct: 371 VSNLDLTTGA 380

Can stimulate E2F-dependent transcription. Binds DNA cooperatively with E2F family members through the E2 recognition site, 5'-TTTC[CG]CGC-3', found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DP2/E2F complex functions in the control of cell-cycle progression from G1 to S phase. The E2F-1/DP complex appears to mediate both cell proliferation and apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q24318|TFDP_DROME Transcription factor Dp OS=Drosophila melanogaster GN=Dp PE=1 SV=2

 Score =  210 bits (534), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 114/251 (45%), Positives = 155/251 (61%), Gaps = 27/251 (10%)

Query: 45  KRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQE----FSEDHNTASSE----- 95
           KR  +KA KGLRHFSMKVCEKV  KG TTYNEVAD+LV E     + D+N          
Sbjct: 160 KRKPDKAGKGLRHFSMKVCEKVEEKGKTTYNEVADDLVSEEMKNNAYDNNCDQKNIRRRV 219

Query: 96  --------------QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQ 141
                         ++KKEI+W+GLP NS +  L L +E  Q  +RI QK   L ++++Q
Sbjct: 220 YDALNVLMAINVISKDKKEIRWIGLPANSTETFLALEEENCQRRERIKQKNEMLREMIMQ 279

Query: 142 QISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNK 201
            ++ K L+++N  +E     P+P+++IQLPF+IV+T K T I+CS++NDK+EY+F FD  
Sbjct: 280 HVAFKGLVERNKRNESQGVVPSPNASIQLPFIIVNTHKSTKINCSVTNDKSEYIFKFDKT 339

Query: 202 FEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYNDGLLAEEDDS 261
           FE+HDDIE+LKRMG  +GLDKGE T E+++  K  V P + KYV   AY  G   E  + 
Sbjct: 340 FEMHDDIEVLKRMGFLLGLDKGECTPENIERVKSWVPPNLAKYVE--AYGTGKTGE--NM 395

Query: 262 MLLDDESGSFD 272
              DDE   F+
Sbjct: 396 YESDDEDNEFN 406

Component of the DREAM complex, a multiprotein complex that can both act as a transcription activator or repressor depending on the context. In follicle cells, the complex plays a central role in the site-specific DNA replication at the chorion loci. During development, the complex represses transcription of developmentally controlled E2F target genes. Can stimulate E2F-dependent transcription.

Drosophila melanogaster (taxid: 7227)

>sp|Q64163|TFDP2_MOUSE Transcription factor Dp-2 OS=Mus musculus GN=Tfdp2 PE=1 SV=2

 Score =  206 bits (525), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/310 (43%), Positives = 184/310 (59%), Gaps = 47/310 (15%)

Query: 6   SGRYVVASPVEYSPEPLPAT----------VKYAKKRSSAGLGDEGGAYKRSR--EKASK 53
           SG  ++ +P  Y+P P   T          V   +KR+   +  +    KRS+  +K  K
Sbjct: 73  SGSVLIGNP--YTPAPAMVTQTHIAEAAGWVPSDRKRAREFIDSDFSESKRSKKGDKNGK 130

Query: 54  GLRHFSMKVCEKVRRKGVTTYNEVADELVQEF--SEDHNTASSEQEKKEIKWL------- 104
           GLRHFSMKVCEKV+RKG T+YNEVADELV EF  S +H  A S  +++ I+         
Sbjct: 131 GLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQENIRRRVYDALNV 190

Query: 105 --------GLPT---------NSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKK 147
                    LPT         NS QE  NL  E+++ I+RI QK   L +LLLQQI+ K 
Sbjct: 191 LMAMNIISSLPTGKKRNQVDCNSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKN 250

Query: 148 LIQKNIDSEKIH-GEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHD 206
           L+Q+N  +E+ + G PA +S IQLPF+I++T +KTVIDCS+S+DK EYLF FDN FEIHD
Sbjct: 251 LVQRNRQNEQQNQGPPAVNSTIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFEIHD 310

Query: 207 DIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA-----YNDGLLAEEDDS 261
           DIE+LKRMG+  GL+ G+ + EDL+ A+ LV   +E Y+  I+      N GLL     S
Sbjct: 311 DIEVLKRMGMSFGLESGKCSLEDLKIARSLVPKALEGYITDISTGPSWLNQGLLLNSTQS 370

Query: 262 ML-LDDESGS 270
           +  LD  +G+
Sbjct: 371 VSNLDPTTGA 380

Can stimulate E2F-dependent transcription. Binds DNA cooperatively with E2F family members through the E2 recognition site, 5'-TTTC[CG]CGC-3', found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DP2/E2F complex functions in the control of cell-cycle progression from G1 to S phase. The E2F-1/DP complex appears to mediate both cell proliferation and apoptosis.

Mus musculus (taxid: 10090)

>sp|Q5H9I0|TFDP3_HUMAN Transcription factor Dp family member 3 OS=Homo sapiens GN=TFDP3 PE=1 SV=1

 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/275 (40%), Positives = 155/275 (56%), Gaps = 30/275 (10%)

Query: 4   GMSGRYVVAS-PVEYSPEPLPATVKYAKKRSSAGLGDEGGAYKRSREKASKGLRHFSMKV 62
           GM  R   ++ PV  SP P P+T   ++ + S       G + R  EK   GL   SMKV
Sbjct: 60  GMPQRPAASNIPVVGSPNP-PSTHFASQNQHSYSSPPWAGQHNRKGEKNGMGLCRLSMKV 118

Query: 63  CEKVRRKGVTTYNEVADELVQEFSEDHNTASSEQ-------------------------- 96
            E V+RKG T+  EV  ELV +F    N AS  +                          
Sbjct: 119 WETVQRKGTTSCQEVVGELVAKFRAASNHASPNESAYDVKNIKRRTYDALNVLMAMNIIS 178

Query: 97  -EKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKN-ID 154
            EKK+IKW+GL TNS Q   NL  ER++ ++RI QK   L  L+LQQI+ K L+ +N   
Sbjct: 179 REKKKIKWIGLTTNSAQNCQNLRVERQKRLERIKQKQSELQQLILQQIAFKNLVLRNQYV 238

Query: 155 SEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRM 214
            E++   P P+S I +PF+I+S+ KKTVI+CS+S+DK+EYLF F++ FEIHDD E+L  M
Sbjct: 239 EEQVSQRPLPNSVIHVPFIIISSSKKTVINCSISDDKSEYLFKFNSSFEIHDDTEVLMWM 298

Query: 215 GLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
           G+  GL+ G  + EDL+ A+ LV   +E YV ++A
Sbjct: 299 GMTFGLESGSCSAEDLKMARNLVPKALEPYVTEMA 333

Competitive inhibitor of E2F-mediated transactivation activity. Impairs E2F-mediated cell-cycle progression from G(1) to S phase.

Homo sapiens (taxid: 9606)

>sp|Q22703|TFDP1_CAEEL Transcription factor dpl-1 OS=Caenorhabditis elegans GN=dpl-1 PE=1 SV=2

 Score =  166 bits (419), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 136/227 (59%), Gaps = 29/227 (12%)

Query: 54  GLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDH-----NTASSE------------- 95
           GLRHFS KVCEKV+ KG+T YNEVADELV ++ +++     +    E             
Sbjct: 72  GLRHFSTKVCEKVKEKGLTNYNEVADELVADYFQNNLIKQIDVVKQEYDMKNIRRRVYDA 131

Query: 96  -----------QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQIS 144
                      + KK+I+W+GLP ++ QE   L +E+ +    I+ K + L +++LQ +S
Sbjct: 132 LNVLLAMNIITKSKKDIRWIGLPASASQEISRLEEEKSRREASISSKKQALEEMVLQIVS 191

Query: 145 LKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEI 204
            K L+++N  +E  +G P   + + LPFLI++TDK+  ++CS+S+DK+E+LF FD KFEI
Sbjct: 192 YKNLVERNRKNEHKNGRPENDTVLHLPFLIINTDKEANVECSVSSDKSEFLFSFDKKFEI 251

Query: 205 HDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYN 251
           HDD EILK++ L   L+    T E+++ AK  +    + YV++I  N
Sbjct: 252 HDDFEILKKLNLACSLETTNPTAEEVKTAKSFLPTLHQHYVDEIIAN 298

Synthetic multivulva class B (synMuvB) protein. SynMuvB proteins are required to repress the induction of vulval development by Ras signaling and probably act by forming the multiprotein DRM complex that repress transcription. Can stimulate E2F-dependent transcription.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9FNY2|DPB_ARATH Transcription factor-like protein DPB OS=Arabidopsis thaliana GN=DPB PE=1 SV=1

 Score =  121 bits (303), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 109/217 (50%), Gaps = 40/217 (18%)

Query: 35  AGLGDEGGAYKRSR-------EKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSE 87
           AG     G  K+ R       +K  +GLR FSMKVCEKV  KG TTYNEVADELV EF+ 
Sbjct: 77  AGSQGASGVKKKKRGQRAAGPDKTGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFAL 136

Query: 88  DHNTASS----------------------------EQEKKEIKWLGLPTNSLQESLNLNK 119
            +N  +S                             ++KKEI+W GLP  SL +   L  
Sbjct: 137 PNNDGTSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSLSDIEELKN 196

Query: 120 ERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEP-APSSAIQLPFLIVSTD 178
           ER  L  RI +KT +  +L  Q + L+ LIQ+N   E ++    APS  + LPF++V T 
Sbjct: 197 ERLSLRNRIEKKTAYSQELEEQYVGLQNLIQRN---EHLYSSGNAPSGGVALPFILVQTR 253

Query: 179 KKTVIDCSMSNDKTEYLFVFDN-KFEIHDDIEILKRM 214
               ++  +S D     F F++  FE+HDD  +LK M
Sbjct: 254 PHATVEVEISEDMQLVHFDFNSTPFELHDDNFVLKTM 290

Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNY3|DPA_ARATH Transcription factor-like protein DPA OS=Arabidopsis thaliana GN=DPA PE=1 SV=1

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 33/206 (16%)

Query: 40  EGGAYKRSREKASKG-LRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDHNTASS---- 94
           E G+ K+ + + S G LR FS+ VC+K+  K +TTY EVADE++ +F+     A      
Sbjct: 38  EIGSEKKGQSRTSGGGLRQFSVMVCQKLEAKKITTYKEVADEIISDFATIKQNAEKPLNE 97

Query: 95  -------------------------EQEKKEIKWLGLPTNSLQESLNLNKERKQLIQRIN 129
                                     ++KKEI+W GLP    ++   +  +R +++  + 
Sbjct: 98  NEYNEKNIRRRVYDALNVFMALDIIARDKKEIRWKGLPITCKKDVEEVKMDRNKVMSSVQ 157

Query: 130 QKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSN 189
           +K   L +L  +  SL+ L+ +N   E +     P+    LPF+++ T+   V++  +S 
Sbjct: 158 KKAAFLKELREKVSSLESLMSRN--QEMVVKTQGPAEGFTLPFILLETNPHAVVEIEISE 215

Query: 190 DKTEYLFVFDNK-FEIHDDIEILKRM 214
           D       F++  F +HDD  ILK M
Sbjct: 216 DMQLVHLDFNSTPFSVHDDAYILKLM 241

Involved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specic genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
322779033	472	hypothetical protein SINV_05415 [Solenop	0.727	0.474	0.549	2e-69
332027172	479	Transcription factor Dp-1 [Acromyrmex ec	0.727	0.467	0.545	5e-69
328792669	472	PREDICTED: transcription factor Dp-1 [Ap	0.727	0.474	0.545	5e-69
340709415	475	PREDICTED: transcription factor Dp-1-lik	0.727	0.471	0.545	6e-69
383856553	473	PREDICTED: transcription factor Dp-1-lik	0.727	0.473	0.545	7e-69
380023485	474	PREDICTED: LOW QUALITY PROTEIN: transcri	0.727	0.472	0.545	1e-68
345479912	404	PREDICTED: transcription factor Dp-1-lik	0.675	0.514	0.540	3e-66
189237332	460	PREDICTED: similar to Transcription fact	0.824	0.552	0.485	8e-65
270006536	412	hypothetical protein TcasGA2_TC010400 [T	0.824	0.616	0.485	1e-64
126337399	434	PREDICTED: transcription factor Dp-1 [Mo	0.678	0.481	0.540	7e-62

>gi|322779033|gb|EFZ09432.1| hypothetical protein SINV_05415 [Solenopsis invicta]

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/251 (54%), Positives = 173/251 (68%), Gaps = 27/251 (10%)

Query: 29  AKKRSSAGLGDEGGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSED 88
           ++KR     GD     +R  EK  KGLRHFSMKVCEKV++KG T+YNEVADELV EF+  
Sbjct: 151 SRKRQDVESGDFVPDKRRKAEKVGKGLRHFSMKVCEKVKKKGTTSYNEVADELVGEFTNP 210

Query: 89  H--NTASSEQ-------------------------EKKEIKWLGLPTNSLQESLNLNKER 121
              N+ + +Q                         EKKEI+WLGLPTNSLQE + L K++
Sbjct: 211 AHINSLTDQQYDQKNIRRRVYDALNVLMAMNIISKEKKEIRWLGLPTNSLQECVALEKDK 270

Query: 122 KQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKT 181
           K+ I+RI  KT+ LH L+L  IS K L+++N  +E + G P P+SAIQLPFLIV+T KKT
Sbjct: 271 KKKIERIKAKTQQLHQLILSHISFKNLVERNRLNESLRGPPKPNSAIQLPFLIVNTSKKT 330

Query: 182 VIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCM 241
           VIDCS+SNDKTEYLF F++KFEIHDDIE+LK+MGL  GL+KGE TEEDLQ+AK +V   +
Sbjct: 331 VIDCSISNDKTEYLFNFNDKFEIHDDIEVLKQMGLAFGLEKGECTEEDLQKAKCMVPKSL 390

Query: 242 EKYVNQIAYND 252
           EKYV Q+A  D
Sbjct: 391 EKYVEQLASGD 401

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027172|gb|EGI67264.1| Transcription factor Dp-1 [Acromyrmex echinatior]

 Score =  267 bits (682), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 137/251 (54%), Positives = 173/251 (68%), Gaps = 27/251 (10%)

Query: 29  AKKRSSAGLGDEGGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSED 88
           ++KR     GD     +R  EK  KGLRHFSMKVCEKV++KG T+YNEVADELV EF+  
Sbjct: 158 SRKRQDVESGDFVPDKRRKAEKVGKGLRHFSMKVCEKVKKKGTTSYNEVADELVGEFTNP 217

Query: 89  H--NTASSEQ-------------------------EKKEIKWLGLPTNSLQESLNLNKER 121
              N+ + +Q                         EKKEI+WLGLPTNSLQE + L K++
Sbjct: 218 AHINSLTDQQYDQKNIRRRVYDALNVLMAMNIISKEKKEIRWLGLPTNSLQECVALEKDK 277

Query: 122 KQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKT 181
           K+ I+RI  KT+ LH L+L  IS K L+++N  +E + G P P+SAIQLPFLIV+T KKT
Sbjct: 278 KKKIERIKAKTQQLHQLILSHISFKNLVERNRLNENLRGPPKPNSAIQLPFLIVNTSKKT 337

Query: 182 VIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCM 241
           VIDCS+SNDKTEYLF F++KFEIHDDIE+LK+MGL  GL+KGE TEE+LQ+AK +V   +
Sbjct: 338 VIDCSISNDKTEYLFNFNDKFEIHDDIEVLKQMGLAFGLEKGECTEENLQKAKFMVPKSL 397

Query: 242 EKYVNQIAYND 252
           EKYV Q+A  D
Sbjct: 398 EKYVEQLASGD 408

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792669|ref|XP_393377.4| PREDICTED: transcription factor Dp-1 [Apis mellifera]

 Score =  267 bits (682), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 137/251 (54%), Positives = 173/251 (68%), Gaps = 27/251 (10%)

Query: 29  AKKRSSAGLGDEGGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSED 88
           ++KR     GD     +R  EK  KGLRHFSMKVCEKV++KG T+YNEVADELV EF+  
Sbjct: 151 SRKRQDVEGGDFVPDKRRKTEKVGKGLRHFSMKVCEKVKKKGTTSYNEVADELVGEFTNP 210

Query: 89  H--NTASSEQ-------------------------EKKEIKWLGLPTNSLQESLNLNKER 121
              N+ + +Q                         EKKEI+WLGLPTNSLQE L L K++
Sbjct: 211 AHINSLTDQQYDQKNIRRRVYDALNVLMAMNIISKEKKEIRWLGLPTNSLQECLALEKDK 270

Query: 122 KQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKT 181
           K+ I+RI  KT+ LH L+L  IS K L+++N  +E + G P P+SAIQLPFLIV+T KKT
Sbjct: 271 KKKIERIKMKTQQLHQLILSHISFKNLVERNRANESLRGPPKPNSAIQLPFLIVNTSKKT 330

Query: 182 VIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCM 241
           VIDCS+SNDKTEYLF F++KFEIHDDIE+LK+MGL  GL+KGE TEE+L++AK +V   +
Sbjct: 331 VIDCSISNDKTEYLFNFNDKFEIHDDIEVLKQMGLAFGLEKGECTEENLRKAKLMVPKSL 390

Query: 242 EKYVNQIAYND 252
           EKYV Q+A  D
Sbjct: 391 EKYVEQLASGD 401

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709415|ref|XP_003393305.1| PREDICTED: transcription factor Dp-1-like [Bombus terrestris] gi|350407142|ref|XP_003487998.1| PREDICTED: transcription factor Dp-1-like [Bombus impatiens]

 Score =  267 bits (682), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 137/251 (54%), Positives = 173/251 (68%), Gaps = 27/251 (10%)

Query: 29  AKKRSSAGLGDEGGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSED 88
           ++KR     GD     +R  EK  KGLRHFSMKVCEKV++KG T+YNEVADELV EF+  
Sbjct: 154 SRKRQDVEGGDFVPDKRRKTEKVGKGLRHFSMKVCEKVKKKGTTSYNEVADELVGEFTNP 213

Query: 89  H--NTASSEQ-------------------------EKKEIKWLGLPTNSLQESLNLNKER 121
              N+ + +Q                         EKKEI+WLGLPTNSLQE L L K++
Sbjct: 214 AHINSLTDQQYDQKNIRRRVYDALNVLMAMNIISKEKKEIRWLGLPTNSLQECLALEKDK 273

Query: 122 KQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKT 181
           K+ I+RI  KT+ LH L+L  IS K L+++N  +E + G P P+SAIQLPFLIV+T KKT
Sbjct: 274 KKKIERIKAKTQQLHQLILSHISFKNLVERNRANESLRGPPKPNSAIQLPFLIVNTSKKT 333

Query: 182 VIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCM 241
           VIDCS+SNDKTEYLF F++KFEIHDDIE+LK+MGL  GL+KGE TEE+L++AK +V   +
Sbjct: 334 VIDCSISNDKTEYLFNFNDKFEIHDDIEVLKQMGLAFGLEKGECTEENLRKAKLMVPKSL 393

Query: 242 EKYVNQIAYND 252
           EKYV Q+A  D
Sbjct: 394 EKYVEQLASGD 404

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856553|ref|XP_003703772.1| PREDICTED: transcription factor Dp-1-like [Megachile rotundata]

 Score =  266 bits (681), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 137/251 (54%), Positives = 173/251 (68%), Gaps = 27/251 (10%)

Query: 29  AKKRSSAGLGDEGGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSED 88
           ++KR     GD     +R  EK  KGLRHFSMKVCEKV++KG T+YNEVADELV EF+  
Sbjct: 152 SRKRQDVEGGDFVPDKRRKTEKVGKGLRHFSMKVCEKVKKKGTTSYNEVADELVGEFTNP 211

Query: 89  H--NTASSEQ-------------------------EKKEIKWLGLPTNSLQESLNLNKER 121
              N+ + +Q                         EKKEI+WLGLPTNSLQE L L K++
Sbjct: 212 AHINSLTDQQYDQKNIRRRVYDALNVLMAMNIISKEKKEIRWLGLPTNSLQECLALEKDK 271

Query: 122 KQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKT 181
           K+ I+RI  KT+ LH L+L  IS K L+++N  +E + G P P+SAIQLPFLIV+T KKT
Sbjct: 272 KKKIERIKAKTQQLHQLILSHISFKNLVERNRANESLRGPPKPNSAIQLPFLIVNTSKKT 331

Query: 182 VIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCM 241
           VIDCS+SNDKTEYLF F++KFEIHDDIE+LK+MGL  GL+KGE TEE+L++AK +V   +
Sbjct: 332 VIDCSISNDKTEYLFNFNDKFEIHDDIEVLKQMGLAFGLEKGECTEENLRKAKLMVPKSL 391

Query: 242 EKYVNQIAYND 252
           EKYV Q+A  D
Sbjct: 392 EKYVEQLASGD 402

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023485|ref|XP_003695551.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor Dp-1-like [Apis florea]

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 137/251 (54%), Positives = 171/251 (68%), Gaps = 27/251 (10%)

Query: 29  AKKRSSAGLGDEGGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSED 88
           ++KR     GD     +R  EK  KGLRHFSMKVCEKV++KG T+YNEVADELV EF+  
Sbjct: 153 SRKRQDVEGGDFVPDKRRKTEKVGKGLRHFSMKVCEKVKKKGTTSYNEVADELVGEFTNP 212

Query: 89  H--NTASSEQ-------------------------EKKEIKWLGLPTNSLQESLNLNKER 121
              N+ + +Q                         EKKEI+WLGLPTNSLQE L L K+ 
Sbjct: 213 AHINSLTDQQYDQKNIRRRVYDALNVLMAMNIISKEKKEIRWLGLPTNSLQECLALEKDX 272

Query: 122 KQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKT 181
           K+ I+RI  KT+ LH L+L  IS K L+++N  +E + G P P SAIQLPFLIV+T KKT
Sbjct: 273 KKKIERIKMKTQQLHQLILSHISFKNLVERNRANESLRGPPKPXSAIQLPFLIVNTSKKT 332

Query: 182 VIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCM 241
           VIDCS+SNDKTEYLF F++KFEIHDDIE+LK+MGL  GL+KGE TEE+L++AK +V   +
Sbjct: 333 VIDCSISNDKTEYLFNFNDKFEIHDDIEVLKQMGLAFGLEKGECTEENLRKAKLMVPKSL 392

Query: 242 EKYVNQIAYND 252
           EKYV Q+A  D
Sbjct: 393 EKYVEQLASGD 403

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479912|ref|XP_001605304.2| PREDICTED: transcription factor Dp-1-like, partial [Nasonia vitripennis]

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 127/235 (54%), Positives = 166/235 (70%), Gaps = 27/235 (11%)

Query: 45  KRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSE-DHNTASSEQ------- 96
           +R  EK  KGLRHFSMKVCEKV++KG T+YNEVADELV EF+   H  + ++Q       
Sbjct: 170 RRKTEKVGKGLRHFSMKVCEKVKKKGTTSYNEVADELVGEFTNPTHANSLTDQQYDQKNI 229

Query: 97  -------------------EKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHD 137
                              EKKEI+WLGLPTNSLQE + L KE+K+  +RI  KT+ LH 
Sbjct: 230 RRRVYDALNVLMAMNIISKEKKEIRWLGLPTNSLQECMALEKEKKKRFERIKAKTQQLHR 289

Query: 138 LLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFV 197
           ++LQ I++K L+++N  +E I G P P+SAIQLPF+I++TD+KTV++CS+SNDKTEYL  
Sbjct: 290 IILQHIAIKNLVERNRINEAISGPPKPNSAIQLPFIIINTDRKTVVNCSISNDKTEYLLN 349

Query: 198 FDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYND 252
           F++KFEIHDDIEILK MGL  GLDKGE ++E+L +AK +V   +EKYV Q+A  D
Sbjct: 350 FNDKFEIHDDIEILKEMGLAYGLDKGECSDENLHKAKTMVPKALEKYVEQMASGD 404

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237332|ref|XP_973384.2| PREDICTED: similar to Transcription factor Dp-2 (E2F dimerization partner 2) [Tribolium castaneum]

 Score =  253 bits (646), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 147/303 (48%), Positives = 194/303 (64%), Gaps = 49/303 (16%)

Query: 45  KRSR--EKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEF-SEDHNTASSEQ----- 96
           KRSR  EK  KGLRHFSMKVCEKVR+KG TTYNEVADELV EF S   N + ++Q     
Sbjct: 161 KRSRKSEKVGKGLRHFSMKVCEKVRKKGKTTYNEVADELVGEFTSASSNNSLADQYDQKN 220

Query: 97  --------------------EKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLH 136
                               EKKEI+W+GLPTNSLQE + L +E+ + I  I +K + L 
Sbjct: 221 IRRRVYDALNVLMAMNIISKEKKEIRWIGLPTNSLQECMQLEREKLKKIASIREKKKQLQ 280

Query: 137 DLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLF 196
           +L+L QIS K L Q+N + E+I+G PAPSS IQLPFLI+ST+KKT IDCS+SNDK EY+F
Sbjct: 281 ELILNQISFKNLAQRNREMEEINGPPAPSSYIQLPFLIISTNKKTEIDCSISNDKKEYVF 340

Query: 197 VFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYNDGLLA 256
            F++KFEI DD+E+LK +G+ MGL+ G+ T E+L+  K++V   +E YV+Q+A+     A
Sbjct: 341 KFNDKFEIKDDVEVLKSIGMLMGLESGKCTPENLERIKKMVPKSLESYVDQLAFG----A 396

Query: 257 EEDDSMLLDDESGSFDSSQIT---IETVMPEEVMSVSGS-------------EGESDLSS 300
            ++   LLD E+    SS +T   +ET + EE    S S             EG+SD+SS
Sbjct: 397 ADETEALLDVEAPG-TSSMLTEDFVETTLDEENSHQSSSDPLSPGAPDFSDDEGDSDMSS 455

Query: 301 DID 303
           DI+
Sbjct: 456 DIE 458

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006536|gb|EFA02984.1| hypothetical protein TcasGA2_TC010400 [Tribolium castaneum]

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 147/303 (48%), Positives = 194/303 (64%), Gaps = 49/303 (16%)

Query: 45  KRSR--EKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEF-SEDHNTASSEQ----- 96
           KRSR  EK  KGLRHFSMKVCEKVR+KG TTYNEVADELV EF S   N + ++Q     
Sbjct: 113 KRSRKSEKVGKGLRHFSMKVCEKVRKKGKTTYNEVADELVGEFTSASSNNSLADQYDQKN 172

Query: 97  --------------------EKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLH 136
                               EKKEI+W+GLPTNSLQE + L +E+ + I  I +K + L 
Sbjct: 173 IRRRVYDALNVLMAMNIISKEKKEIRWIGLPTNSLQECMQLEREKLKKIASIREKKKQLQ 232

Query: 137 DLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLF 196
           +L+L QIS K L Q+N + E+I+G PAPSS IQLPFLI+ST+KKT IDCS+SNDK EY+F
Sbjct: 233 ELILNQISFKNLAQRNREMEEINGPPAPSSYIQLPFLIISTNKKTEIDCSISNDKKEYVF 292

Query: 197 VFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYNDGLLA 256
            F++KFEI DD+E+LK +G+ MGL+ G+ T E+L+  K++V   +E YV+Q+A+     A
Sbjct: 293 KFNDKFEIKDDVEVLKSIGMLMGLESGKCTPENLERIKKMVPKSLESYVDQLAFG----A 348

Query: 257 EEDDSMLLDDESGSFDSSQIT---IETVMPEEVMSVSGS-------------EGESDLSS 300
            ++   LLD E+    SS +T   +ET + EE    S S             EG+SD+SS
Sbjct: 349 ADETEALLDVEAPG-TSSMLTEDFVETTLDEENSHQSSSDPLSPGAPDFSDDEGDSDMSS 407

Query: 301 DID 303
           DI+
Sbjct: 408 DIE 410

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|126337399|ref|XP_001373603.1| PREDICTED: transcription factor Dp-1 [Monodelphis domestica]

 Score =  243 bits (620), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 128/237 (54%), Positives = 158/237 (66%), Gaps = 28/237 (11%)

Query: 41  GGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFS--EDH---NTASSE 95
            G   R  EK  KGLRHFSMKVCEKV+RKG T+YNEVADELV EFS  ++H   N ++ +
Sbjct: 125 AGKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHILPNESAYD 184

Query: 96  Q----------------------EKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTR 133
           Q                      EKKEIKW+GLPTNS QE  NL  ER++ ++RI QK  
Sbjct: 185 QKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQS 244

Query: 134 HLHDLLLQQISLKKLIQKNIDSEKIHGEPAPS-SAIQLPFLIVSTDKKTVIDCSMSNDKT 192
            L +L+LQQI+ K L+Q+N  +E+    P PS S I LPF+IV+T KKTVIDCS+SNDK 
Sbjct: 245 QLQELILQQIAFKNLVQRNRQAEQQASRPPPSNSVIHLPFIIVNTSKKTVIDCSISNDKF 304

Query: 193 EYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
           EYLF FDN FEIHDDIEILKRMG+  GL+ G  + EDL+ A+ LV   +E YV ++A
Sbjct: 305 EYLFNFDNTFEIHDDIEILKRMGMACGLESGSCSAEDLKMARSLVPKALEPYVTEMA 361

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
ZFIN|ZDB-GENE-040426-1746	386	tfdp1b "transcription factor D	0.5	0.398	0.445	4.2e-49
MGI|MGI:107167	446	Tfdp2 "transcription factor Dp	0.457	0.316	0.471	3.3e-47
WB|WBGene00001061	598	dpl-1 [Caenorhabditis elegans	0.506	0.260	0.358	9.8e-38
UNIPROTKB|F1Q0W2	415	TFDP1 "Uncharacterized protein	0.5	0.371	0.516	1e-36
UNIPROTKB|Q14186	410	TFDP1 "Transcription factor Dp	0.5	0.375	0.516	1.3e-36
UNIPROTKB|B4DLQ9	311	TFDP1 "Transcription factor Dp	0.5	0.495	0.516	1.3e-36
UNIPROTKB|F1P3E8	411	TFDP1 "Uncharacterized protein	0.5	0.374	0.516	1.3e-36
UNIPROTKB|F1MA53	409	MGC112830 "Protein MGC112830"	0.5	0.376	0.509	1.7e-36
MGI|MGI:101934	410	Tfdp1 "transcription factor Dp	0.5	0.375	0.509	1.7e-36
UNIPROTKB|G3V8H9	290	MGC112830 "Similar to transcri	0.5	0.531	0.509	1.7e-36

ZFIN|ZDB-GENE-040426-1746 tfdp1b "transcription factor Dp-1, b" [Danio rerio (taxid:7955)]

 Score = 353 (129.3 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
 Identities = 69/155 (44%), Positives = 101/155 (65%)

Query:    96 QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDXXXXXXXXXXXXXXXXDS 155
             ++KKEIKW+G PTNS QE  +L  ER++  +RI QK   L +                + 
Sbjct:   182 KDKKEIKWIGFPTNSAQECEDLKAERQKRQERIKQKQSQLQELIVQQIAFKNLVQRNREV 241

Query:   156 EK-IHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRM 214
             E+     P+ ++ IQLPF+I++T KKT+IDCS+SNDK EYLF FD+ FEIHDD+E+LKR+
Sbjct:   242 EQQSKRSPSANTIIQLPFIIINTSKKTIIDCSISNDKFEYLFNFDSMFEIHDDVEVLKRL 301

Query:   215 GLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
             GL +GL+ G  + E ++ A  LV+  ++ YV ++A
Sbjct:   302 GLALGLESGRCSAEQMKIATSLVSKALQPYVTEMA 336

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:107167 Tfdp2 "transcription factor Dp 2" [Mus musculus (taxid:10090)]

 Score = 323 (118.8 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
 Identities = 67/142 (47%), Positives = 92/142 (64%)

Query:   109 NSLQESLNLNKERKQLIQRINQKTRHLHDXXXXXXXXXXXXXXXXDSEKIH-GEPAPSSA 167
             NS QE  NL  E+++ I+RI QK   L +                 +E+ + G PA +S 
Sbjct:   212 NSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPAVNST 271

Query:   168 IQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTE 227
             IQLPF+I++T +KTVIDCS+S+DK EYLF FDN FEIHDDIE+LKRMG+  GL+ G+ + 
Sbjct:   272 IQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFEIHDDIEVLKRMGMSFGLESGKCSL 331

Query:   228 EDLQEAKRLVAPCMEKYVNQIA 249
             EDL+ A+ LV   +E Y+  I+
Sbjct:   332 EDLKIARSLVPKALEGYITDIS 353

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005635 "nuclear envelope" evidence=TAS

GO:0005667 "transcription factor complex" evidence=IC

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0008134 "transcription factor binding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

WB|WBGene00001061 dpl-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 284 (105.0 bits), Expect = 9.8e-38, Sum P(2) = 9.8e-38
 Identities = 56/156 (35%), Positives = 91/156 (58%)

Query:    96 QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDXXXXXXXXXXXXXXXXDS 155
             + KK+I+W+GLP ++ QE   L +E+ +    I+ K + L +                 +
Sbjct:   143 KSKKDIRWIGLPASASQEISRLEEEKSRREASISSKKQALEEMVLQIVSYKNLVERNRKN 202

Query:   156 EKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMG 215
             E  +G P   + + LPFLI++TDK+  ++CS+S+DK+E+LF FD KFEIHDD EILK++ 
Sbjct:   203 EHKNGRPENDTVLHLPFLIINTDKEANVECSVSSDKSEFLFSFDKKFEIHDDFEILKKLN 262

Query:   216 LGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYN 251
             L   L+    T E+++ AK  +    + YV++I  N
Sbjct:   263 LACSLETTNPTAEEVKTAKSFLPTLHQHYVDEIIAN 298

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IMP

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0012501 "programmed cell death" evidence=IGI;IMP

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1Q0W2 TFDP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 80/155 (51%), Positives = 102/155 (65%)

Query:    96 QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDXXXXXXXXXXXXXXXXDS 155
             +EKKEIKW+GLPTNS QE  NL  ER++ ++RI QK   L +                 +
Sbjct:   189 KEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRQA 248

Query:   156 EKIHGEPAP-SSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRM 214
             E+    P P +S I LPF+IV+T KKTVIDCS+SNDK EYLF FDN FEIHDDIE+LKRM
Sbjct:   249 EQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRM 308

Query:   215 GLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
             G+  GL+ G  + EDL+ A+ LV   +E YV ++A
Sbjct:   309 GMACGLESGSCSAEDLKMARSLVPKALEPYVTEMA 343

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|Q14186 TFDP1 "Transcription factor Dp-1" [Homo sapiens (taxid:9606)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 80/155 (51%), Positives = 102/155 (65%)

Query:    96 QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDXXXXXXXXXXXXXXXXDS 155
             +EKKEIKW+GLPTNS QE  NL  ER++ ++RI QK   L +                 +
Sbjct:   184 KEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHA 243

Query:   156 EKIHGEPAP-SSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRM 214
             E+    P P +S I LPF+IV+T KKTVIDCS+SNDK EYLF FDN FEIHDDIE+LKRM
Sbjct:   244 EQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRM 303

Query:   215 GLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
             G+  GL+ G  + EDL+ A+ LV   +E YV ++A
Sbjct:   304 GMACGLESGSCSAEDLKMARSLVPKALEPYVTEMA 338

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0003713 "transcription coactivator activity" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0000080 "G1 phase of mitotic cell cycle" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006351 "transcription, DNA-dependent" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=TAS

UNIPROTKB|B4DLQ9 TFDP1 "Transcription factor Dp-1" [Homo sapiens (taxid:9606)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 80/155 (51%), Positives = 102/155 (65%)

Query:    96 QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDXXXXXXXXXXXXXXXXDS 155
             +EKKEIKW+GLPTNS QE  NL  ER++ ++RI QK   L +                 +
Sbjct:    89 KEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHA 148

Query:   156 EKIHGEPAP-SSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRM 214
             E+    P P +S I LPF+IV+T KKTVIDCS+SNDK EYLF FDN FEIHDDIE+LKRM
Sbjct:   149 EQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRM 208

Query:   215 GLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
             G+  GL+ G  + EDL+ A+ LV   +E YV ++A
Sbjct:   209 GMACGLESGSCSAEDLKMARSLVPKALEPYVTEMA 243

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1P3E8 TFDP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 80/155 (51%), Positives = 102/155 (65%)

Query:    96 QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDXXXXXXXXXXXXXXXXDS 155
             +EKKEIKW+GLPTNS QE  NL  E+++ ++RI QK   L +                 +
Sbjct:   184 KEKKEIKWIGLPTNSAQECQNLEVEKQRRLERIKQKQSQLQELILQQIAFKNLVQRNRQA 243

Query:   156 EKIHGEPAPS-SAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRM 214
             E+    P PS S I LPF+IV+T KKTVIDCS+SNDK EYLF FDN FEIHDDIE+LKRM
Sbjct:   244 EQQANRPPPSNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRM 303

Query:   215 GLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
             G+  GL+ G  + EDL+ A+ LV   +E YV ++A
Sbjct:   304 GMACGLESGSCSAEDLKIARSLVPKALEPYVTEMA 338

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0000084 "S phase of mitotic cell cycle" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008544 "epidermis development" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1MA53 MGC112830 "Protein MGC112830" [Rattus norvegicus (taxid:10116)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 79/155 (50%), Positives = 102/155 (65%)

Query:    96 QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDXXXXXXXXXXXXXXXXDS 155
             +EKKEIKW+GLPTNS QE  NL  ER++ ++RI QK   L +                 +
Sbjct:   183 KEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRQA 242

Query:   156 EK-IHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRM 214
             E+     P P+S I LPF+IV+T +KTVIDCS+SNDK EYLF FDN FEIHDDIE+LKRM
Sbjct:   243 EQQARRPPPPNSVIHLPFIIVNTSRKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRM 302

Query:   215 GLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
             G+  GL+ G  + EDL+ A+ LV   +E YV ++A
Sbjct:   303 GMACGLESGSCSAEDLKVARSLVPKALEPYVTEMA 337

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

MGI|MGI:101934 Tfdp1 "transcription factor Dp 1" [Mus musculus (taxid:10090)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 79/155 (50%), Positives = 102/155 (65%)

Query:    96 QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDXXXXXXXXXXXXXXXXDS 155
             +EKKEIKW+GLPTNS QE  NL  ER++ ++RI QK   L +                 +
Sbjct:   184 KEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRQA 243

Query:   156 EK-IHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRM 214
             E+     P P+S I LPF+IV+T +KTVIDCS+SNDK EYLF FDN FEIHDDIE+LKRM
Sbjct:   244 EQQARRPPPPNSVIHLPFIIVNTSRKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRM 303

Query:   215 GLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
             G+  GL+ G  + EDL+ A+ LV   +E YV ++A
Sbjct:   304 GMACGLESGNCSAEDLKVARSLVPKALEPYVTEMA 338

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005667 "transcription factor complex" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0006915 "apoptotic process" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008544 "epidermis development" evidence=IMP

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000278 "regulation of DNA biosynthetic process" evidence=IMP

UNIPROTKB|G3V8H9 MGC112830 "Similar to transcription factor, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 79/155 (50%), Positives = 102/155 (65%)

Query:    96 QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDXXXXXXXXXXXXXXXXDS 155
             +EKKEIKW+GLPTNS QE  NL  ER++ ++RI QK   L +                 +
Sbjct:    64 KEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRQA 123

Query:   156 EK-IHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRM 214
             E+     P P+S I LPF+IV+T +KTVIDCS+SNDK EYLF FDN FEIHDDIE+LKRM
Sbjct:   124 EQQARRPPPPNSVIHLPFIIVNTSRKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRM 183

Query:   215 GLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
             G+  GL+ G  + EDL+ A+ LV   +E YV ++A
Sbjct:   184 GMACGLESGSCSAEDLKVARSLVPKALEPYVTEMA 218

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q17QZ4	TFDP1_BOVIN	No assigned EC number	0.5274	0.6785	0.5097	yes	N/A
Q08639	TFDP1_MOUSE	No assigned EC number	0.5274	0.6785	0.5097	yes	N/A
Q14186	TFDP1_HUMAN	No assigned EC number	0.5316	0.6785	0.5097	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	308
pfam08781	141	pfam08781, DP, Transcription factor DP	4e-49
pfam02319	67	pfam02319, E2F_TDP, E2F/DP family winged-helix DNA	2e-04

>gnl|CDD|192151 pfam08781, DP, Transcription factor DP

 Score =  159 bits (405), Expect = 4e-49
 Identities = 72/138 (52%), Positives = 98/138 (71%), Gaps = 2/138 (1%)

Query: 112 QESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLP 171
           QE   L +ER++ I+RI QK   L +L+LQQ++LK L+Q+N + E       PSS IQLP
Sbjct: 1   QEIEKLEEERQKRIERIEQKQAQLQELILQQVALKNLVQRNQELE--SSGNVPSSGIQLP 58

Query: 172 FLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQ 231
           F++V+T KK VIDC +S DK+EY F F++ FEIHDDIE+LKRMGL +GL+ G  + E+L+
Sbjct: 59  FILVNTSKKAVIDCEISEDKSEYHFDFNSTFEIHDDIEVLKRMGLALGLESGPCSAENLK 118

Query: 232 EAKRLVAPCMEKYVNQIA 249
            AK LV   +E YV +IA
Sbjct: 119 TAKSLVPKALEPYVTEIA 136

DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer and negatively regulates the G1-S transition. Length = 141

>gnl|CDD|202203 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA-binding domain

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)

Query: 50 KASKGLRHFSMK---VCEKVRRKGVTTYNEVADEL 81
          +  K L   + K   +CEK    G+T  NE A EL
Sbjct: 1  RKEKSLGLLTQKFLKLCEKSPD-GITDLNEAAKEL 34

This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
KOG2829|consensus	326		100.0
PF08781	142	DP: Transcription factor DP; InterPro: IPR014889 D	100.0
PF02319	71	E2F_TDP: E2F/DP family winged-helix DNA-binding do	97.65
KOG2577|consensus	354		92.8

>KOG2829|consensus

Probab=100.00  E-value=9.4e-82  Score=590.38  Aligned_cols=221  Identities=49%  Similarity=0.792  Sum_probs=209.0

Q ss_pred             cccccccccCCCCCC-CCCCcccccccccCcchhhhhHHHHHHHhhcCCcchHHHHHHHHHhhhcccC------------
Q psy9354          24 ATVKYAKKRSSAGLG-DEGGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDHN------------   90 (308)
Q Consensus        24 ~tq~~~~kr~~~~~s-~~~~~krk~~ek~~kGLRhfSmKVcEKVqeKg~TTYnEVADELV~E~~~~~~------------   90 (308)
                      |.++.+     +.+. .|++++.++++++++|||||||+|||||++||+|||||||||||++|...++            
T Consensus        19 ~~~~~~-----s~~~~~~~a~~~~ks~k~g~gLRhfs~kVCeKve~Kg~TtYneVADelVaef~~~n~~~~i~~n~~~yd   93 (326)
T KOG2829|consen   19 VLGNQP-----SDSGSSWSAGRKRKSDKAGGGLRHFSMKVCEKVERKGTTTYNEVADELVAEFAGANNYSHICPNEQEYD   93 (326)
T ss_pred             cccCCc-----CCCCCccccccCCCCCCCCcchhhhhHHHHHHHHhcCCccHHHHHHHHHHHHhccccccccCccccccc
Confidence            555544     4444 8999989999999999999999999999999999999999999999988761            


Q ss_pred             -----------------cccccccCccEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy9354          91 -----------------TASSEQEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNI  153 (308)
Q Consensus        91 -----------------i~IIsKeKKeIkWiGLPtns~qe~~~Le~ek~k~~erIkqKk~~LqELi~Q~iA~KnLV~RNk  153 (308)
                                       ++||+|+||+|+|+|||+|+.++|++|++|++++++||++|+++||||++|++||||||+||+
T Consensus        94 ~KNIRRRVYDALNVlmAmnIIsKdKKEIrW~GLP~~ss~dv~~le~Er~k~~erI~kK~a~lqEl~~q~~~fknLV~RN~  173 (326)
T KOG2829|consen   94 QKNIRRRVYDALNVLMAMNIISKDKKEIRWIGLPATSSQDVSELEEERKKRMERIKKKAAQLQELIEQVSAFKNLVQRNR  173 (326)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcccceeeeeccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                             369999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCCCCCCccccceEEEEcCCCCeEEeeeecCcceEEEEcCCceeeeccHHHHHHhhccCCCCCCCCCHHHHHHH
Q psy9354         154 DSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEA  233 (308)
Q Consensus       154 ~~e~~~~~~~~~~~I~LPFIlV~Tsk~t~IdCeiS~Dk~ey~F~F~~~FEIhDD~eILK~Mgl~~gLe~g~~s~edl~~a  233 (308)
                      .++..+++|+++  |+||||||+|+++|+|+|+||+|+++|+|+||+||+||||++|||+||++|||+.|.||++|++.|
T Consensus       174 ~~e~~~~~P~~~--i~LPFiiinT~k~a~IeceiseDks~~~F~FnktFevHDD~eILK~m~~~~~le~~~~saed~~~~  251 (326)
T KOG2829|consen  174 HAESQGQPPSEN--IHLPFIIINTSKKAVIECEISEDKSEYLFKFNKTFEVHDDIEILKRMGENCGLEQGNCSAEDLKIA  251 (326)
T ss_pred             hhhhccCCCCcc--cccceEEEecCCCceEEEEecccceeeeeecCCceeeccHHHHHHHHHhhcccccCCCCHHHHHHH
Confidence            999976666554  999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccchhhHHHHHHHhhc
Q psy9354         234 KRLVAPCMEKYVNQIAYN  251 (308)
Q Consensus       234 k~lvPk~l~~yv~~~~~~  251 (308)
                      ++|+|++|++|++.|++|
T Consensus       252 ~s~~p~~~e~~~~~~~~~  269 (326)
T KOG2829|consen  252 KSLVPEALEKYVENINTG  269 (326)
T ss_pred             HhhCcccccccccccccc
Confidence            999999999999999999

>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression

Probab=100.00  E-value=5.7e-53  Score=363.15  Aligned_cols=140  Identities=48%  Similarity=0.813  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcCCCCCCCccccceEEEEcCCCCeEEeeeecCc
Q psy9354         112 QESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDK  191 (308)
Q Consensus       112 qe~~~Le~ek~k~~erIkqKk~~LqELi~Q~iA~KnLV~RNk~~e~~~~~~~~~~~I~LPFIlV~Tsk~t~IdCeiS~Dk  191 (308)
                      |+|++|++|++++++||++|+++||||++|++||||||+||+++++.++.|+  ++|+||||||+|+++|+|+|+||+|+
T Consensus         1 q~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~knLv~RN~~~~~~~~~p~--~~i~LPFIlV~T~~~a~I~ceiS~D~   78 (142)
T PF08781_consen    1 QECEELEEEKQRRRERIKKKKEQLQELILQQVAFKNLVQRNRQLEQSGNAPS--SGIQLPFILVNTSKKAVIECEISEDK   78 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS----GEEESS-EEEEEESS--EEEEE-TTS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC--CeeecCEEEEEecCCcEEEEEEcCCc
Confidence            6899999999999999999999999999999999999999999999755544  89999999999999999999999999


Q ss_pred             ceEEEEcCCc-eeeeccHHHHHHhhccCCCCCCCCCHHHHHHHHhccchhhHHHHHHHhhcCC
Q psy9354         192 TEYLFVFDNK-FEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYNDG  253 (308)
Q Consensus       192 ~ey~F~F~~~-FEIhDD~eILK~Mgl~~gLe~g~~s~edl~~ak~lvPk~l~~yv~~~~~~~~  253 (308)
                      ++|+|+||++ ||||||++|||+|||++||++|.|++++++.|++++|++|++||++||.|+.
T Consensus        79 ~~~~F~Fn~~pFeIhDD~eVLK~m~~~~~~~~~~~~~~~~~~~~s~~p~~l~~yv~~~~~~~~  141 (142)
T PF08781_consen   79 SEYHFDFNSTPFEIHDDIEVLKRMGLAFGLESGSCTPEDLAKAKSLVPKALEPYVDEMAQGTS  141 (142)
T ss_dssp             SEEEEEESS--EEEEEHHHHHHHTTTTTTGGGT---HHHHHHHHHTS-GGGHHHHHHHHHSTT
T ss_pred             cEEEEEcCCCceeeechHHHHHHHHhhcCCCCCCCCccchhcccccCCccchhhhHHHhhcCC
Confidence            9999999998 9999999999999999999999999999999999999999999999999975

The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.

>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle

Probab=97.65  E-value=2.1e-05  Score=60.44  Aligned_cols=55  Identities=25%  Similarity=0.462  Sum_probs=43.2

Q ss_pred             ccCcchhhhhHH---HHHHHhhcCCcchHHHHHHHHHhhhccc------------Ccccccc-cCccEEEec
Q psy9354          50 KASKGLRHFSMK---VCEKVRRKGVTTYNEVADELVQEFSEDH------------NTASSEQ-EKKEIKWLG  105 (308)
Q Consensus        50 k~~kGLRhfSmK---VcEKVqeKg~TTYnEVADELV~E~~~~~------------~i~IIsK-eKKeIkWiG  105 (308)
                      ++.+||.+++.+   +|+..+. +.+++++||++|+.+-....            +++||.| .|+.++|+|
T Consensus         1 r~~~sL~~lt~~fi~~~~~~~~-~~i~l~~ia~~l~~~~~k~~~RRlYDI~NVLealgli~K~~k~~~~W~G   71 (71)
T PF02319_consen    1 RKEKSLKLLTQRFIQLFESSPD-KSISLNEIADKLISENVKTQRRRLYDIINVLEALGLIEKQSKNSYKWIG   71 (71)
T ss_dssp             TTTTHHHHHHHHHHHHHHHCCC-TEEEHHHHHHHCHHHCCHHHCHHHHHHHHHHHHCTSEEEEETTEEEE--
T ss_pred             CCcCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHcccccccccchhhHHHHHHHHhCceeecCCCceEecC
Confidence            467899999999   7777766 99999999999998822111            4689999 888999998

Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.

>KOG2577|consensus

Probab=92.80  E-value=4  Score=40.91  Aligned_cols=146  Identities=18%  Similarity=0.245  Sum_probs=79.8

Q ss_pred             ccccccCcchhhhhHHHHHHHhhc--CCcchHHHHHHHHHhhhccc--------Ccccccc-cCccEEEecCCCCC----
Q psy9354          46 RSREKASKGLRHFSMKVCEKVRRK--GVTTYNEVADELVQEFSEDH--------NTASSEQ-EKKEIKWLGLPTNS----  110 (308)
Q Consensus        46 k~~ek~~kGLRhfSmKVcEKVqeK--g~TTYnEVADELV~E~~~~~--------~i~IIsK-eKKeIkWiGLPtns----  110 (308)
                      .++-+..+.|-.+..|-...|++-  |.-.-|++|+.|=-- +-.-        .|++|.| .|..|+|+|--.++    
T Consensus        64 ~~~~R~d~SLglLTkKFv~Llq~s~dGvldLn~aA~~L~Vq-KRRIYDITNVLEGI~LIeKksKN~IqW~G~~~~~~~~~  142 (354)
T KOG2577|consen   64 SESTRSDTSLGLLTKKFVDLLQESPDGVLDLNKAAEVLNVQ-KRRIYDITNVLEGIGLIEKKSKNNIQWIGGDFNSTGGV  142 (354)
T ss_pred             CCcccchhhHHHHHHHHHHHHHhCCCceeeHHHHHHHhccc-cceeeehhhhhhcccceeeccccceeeecCCCcccccc
Confidence            455667778999999999999876  599999999998322 1111        3567766 45679999987664    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HhHhhhhh----cCCCCCCCccccc-eEEEEcCCCC
Q psy9354         111 LQESLNLNKERKQLIQRINQKTRHLHDLL-LQQISLKKLIQ---KNIDSEKI----HGEPAPSSAIQLP-FLIVSTDKKT  181 (308)
Q Consensus       111 ~qe~~~Le~ek~k~~erIkqKk~~LqELi-~Q~iA~KnLV~---RNk~~e~~----~~~~~~~~~I~LP-FIlV~Tsk~t  181 (308)
                      ...++.|+.|...    +.+....|-+|+ .-+..|++|.+   .++.++-.    ..-+    .++-= .|+|.....+
T Consensus       143 ~e~~~~l~~e~~~----L~~~E~~LD~~i~~~q~~L~~lted~~n~~laYVT~eDI~~i~----~f~~q~vi~vkap~et  214 (354)
T KOG2577|consen  143 PERLNGLEAEVED----LSQEEDDLDQLIRDCQQNLRLLTEDVENRRLAYVTYEDIRSIP----GFDEQTVIAVKAPPET  214 (354)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcchhcccceeeeHHHHhhcc----ccCCceEEEEecCCcc
Confidence            2334444444332    222222332222 12223333322   22222111    1111    11222 2467777778


Q ss_pred             eEEeeee-cCcceEEEEcCC
Q psy9354         182 VIDCSMS-NDKTEYLFVFDN  200 (308)
Q Consensus       182 ~IdCeiS-~Dk~ey~F~F~~  200 (308)
                      ..+|-+. .++..+...-++
T Consensus       215 ~levp~~~~~~~~i~L~s~~  234 (354)
T KOG2577|consen  215 RLEVPDPDEDRYQIRLKSNQ  234 (354)
T ss_pred             eEecccCCCCceEEEeccCC
Confidence            8887777 555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	308
2aze_A	155	Structure Of The Rb C-Terminal Domain Bound To An E		5e-31
1cf7_B	95	Structural Basis Of Dna Recognition By The Heterodi		1e-17

>pdb|2AZE|A Chain A, Structure Of The Rb C-Terminal Domain Bound To An E2f1-Dp1 Heterodimer Length = 155

Iteration: 1
 Score =  131 bits (329), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Query: 112 QESLNLNKERKQLIQRINQKTRHLHDXXXXXXXXXXXXXXXXDSEKIHGEPAP-SSAIQL 170
           QE  NL  ER++ ++RI QK   L +                 +E+    P P +S I L
Sbjct: 5   QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHL 64
Query: 171 PFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDL 230
           PF+IV+T KKTVIDCS+SNDK EYLF FDN FEIHDDIE+LKRMG+  GL+ G  + EDL
Sbjct: 65  PFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDL 124
Query: 231 QEAKRLVAPCMEKYVNQIA 249
           + A+ LV   +E YV ++A
Sbjct: 125 KMARSLVPKALEPYVTEMA 143

>pdb|1CF7|B Chain B, Structural Basis Of Dna Recognition By The Heterodimeric Cell Cycle Transcription Factor E2f-Dp Length = 95

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 55/90 (61%), Gaps = 26/90 (28%)
Query: 49  EKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDHNTASSE------------- 95
           +K  KGLRHFSMKVCEKV+RKG T+YNEVADELV EF+  +N  +++             
Sbjct: 6   DKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVY 65
Query: 96  -------------QEKKEIKWLGLPTNSLQ 112
                        +EKKEIKW+GLPTNS Q
Sbjct: 66  DALNVLMAMNIISKEKKEIKWIGLPTNSAQ 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	308
2aze_A	155	Transcription factor DP-1; coiled coil, beta sandw	9e-53
1cf7_B	95	Protein (transcription factor DP-2); E2F, winged-h	3e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1 Length = 155

 Score =  169 bits (429), Expect = 9e-53
 Identities = 76/139 (54%), Positives = 100/139 (71%), Gaps = 1/139 (0%)

Query: 112 QESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGE-PAPSSAIQL 170
           QE  NL  ER++ ++RI QK   L +L+LQQI+ K L+Q+N  +E+     P P+S I L
Sbjct: 5   QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHL 64

Query: 171 PFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDL 230
           PF+IV+T KKTVIDCS+SNDK EYLF FDN FEIHDDIE+LKRMG+  GL+ G  + EDL
Sbjct: 65  PFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDL 124

Query: 231 QEAKRLVAPCMEKYVNQIA 249
           + A+ LV   +E YV ++A
Sbjct: 125 KMARSLVPKALEPYVTEMA 143

>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Length = 95

 Score = 80.1 bits (197), Expect = 3e-19
 Identities = 45/94 (47%), Positives = 55/94 (58%), Gaps = 26/94 (27%)

Query: 45  KRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDHNTASSEQ-------- 96
            +  +K  KGLRHFSMKVCEKV+RKG T+YNEVADELV EF+  +N  +++         
Sbjct: 2   SKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIR 61

Query: 97  ------------------EKKEIKWLGLPTNSLQ 112
                             EKKEIKW+GLPTNS Q
Sbjct: 62  RRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQ 95

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 30/282 (10%), Positives = 82/282 (29%), Gaps = 65/282 (23%)

Query: 10  VVASPVEYSPEPLPATVKYAKKRSSAGLGDEGGAYKRSREKASKGLRHFSMKVCEKVRRK 69
           ++   ++  P+ LP  V     R  + +        R         +H +   C+K+   
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIA----ESIRDGLATWDNWKHVN---CDKLTTI 358

Query: 70  GVTTYNEVADELVQE-------FSEDHNTASSEQEKKEIKWLGLPTNSLQESLNLNKERK 122
             ++ N +     ++       F    +  +       + W  +  + +   +N   +  
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPT---ILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 123 QLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTV 182
            + ++  + T  +  + L      +L  K  +   +H             ++   D   +
Sbjct: 416 LVEKQPKESTISIPSIYL------ELKVKLENEYALHRS-----------IV---DHYNI 455

Query: 183 IDCSMSNDKT-----EYLFVFD----NKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEA 233
                S+D       +Y +          E  + + + + + L        + E+ ++  
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-----FLEQKIRHD 510

Query: 234 KRLVAPC---------MEKYVNQIAYNDGLLAEEDDSMLLDD 266
                           ++ Y   I  ND          L++ 
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDND-----PKYERLVNA 547

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	308
2aze_A	155	Transcription factor DP-1; coiled coil, beta sandw	100.0
1cf7_B	95	Protein (transcription factor DP-2); E2F, winged-h	99.9
1cf7_A	76	Protein (transcription factor E2F-4); E2F, winged-	96.51

>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1

Probab=100.00  E-value=5.9e-59  Score=403.42  Aligned_cols=146  Identities=52%  Similarity=0.817  Sum_probs=140.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-cCCCCCCCccccceEEEEcCCCCeEEeee
Q psy9354         109 NSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKI-HGEPAPSSAIQLPFLIVSTDKKTVIDCSM  187 (308)
Q Consensus       109 ns~qe~~~Le~ek~k~~erIkqKk~~LqELi~Q~iA~KnLV~RNk~~e~~-~~~~~~~~~I~LPFIlV~Tsk~t~IdCei  187 (308)
                      ||+|+|++|+.|++++++||++|+++||||++|++||||||+||+++++. .++|+++++|+||||||+|+++|+|+|+|
T Consensus         2 ~s~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e~~~~~~~~~~~~I~LPFIlV~T~k~t~I~ceI   81 (155)
T 2aze_A            2 EFAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSI   81 (155)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCGGGEEESSCEEEEEESSCCEEEEE
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCEeecCEEEEEcCCCCEEEEEE
Confidence            89999999999999999999999999999999999999999999999984 44567789999999999999999999999


Q ss_pred             ecCcceEEEEcCCceeeeccHHHHHHhhccCCCCCCCCCHHHHHHHHhccchhhHHHHHHHhhcCCC
Q psy9354         188 SNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYNDGL  254 (308)
Q Consensus       188 S~Dk~ey~F~F~~~FEIhDD~eILK~Mgl~~gLe~g~~s~edl~~ak~lvPk~l~~yv~~~~~~~~~  254 (308)
                      |+|+++|+|+||+|||||||++|||+|||+|||++|+||+||++.||+|||++|++||++||+|+..
T Consensus        82 SeD~~~~~F~F~~pFEIHDD~eVLK~mgl~~gle~g~cs~e~l~~~ks~vP~~l~~yv~~~a~g~~~  148 (155)
T 2aze_A           82 SNDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDLKMARSLVPKALEPYVTEMAQGTVG  148 (155)
T ss_dssp             CTTSSEEEEEESSCEEEEEHHHHHHHTTTTTTGGGTCCCHHHHHHHHHTSCGGGHHHHHHHHHTTTC
T ss_pred             ecCccEEEEeCCCCeeccChHHHHHHHHHHhCCCCCCCCHHHHHHHHHhCChhhhhhHHHHhcCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999854

>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17

Probab=99.90  E-value=3.8e-25  Score=178.76  Aligned_cols=68  Identities=65%  Similarity=1.022  Sum_probs=52.5

Q ss_pred             cccccccCcchhhhhHHHHHHHhhcCCcchHHHHHHHHHhhhccc--------------------------CcccccccC
Q psy9354          45 KRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDH--------------------------NTASSEQEK   98 (308)
Q Consensus        45 rk~~ek~~kGLRhfSmKVcEKVqeKg~TTYnEVADELV~E~~~~~--------------------------~i~IIsKeK   98 (308)
                      +|+++|+++|||||||+|||||+++++|||+|||||||+||.++.                          +++||+|+|
T Consensus         2 ~~~~~k~~~GLr~fS~kVcekVk~k~~Tty~eVAdeLV~e~~~~~~~~~~~~~~d~~~~rRRvYD~~NVl~a~gii~K~k   81 (95)
T 1cf7_B            2 SKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISKEK   81 (95)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCCCS
T ss_pred             CccccccCccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcccccCccchhcccccchhhHHHHHHHHHHhcceecCC
Confidence            589999999999999999999999999999999999999997642                          257999999


Q ss_pred             ccEEEecCCCCCHH
Q psy9354          99 KEIKWLGLPTNSLQ  112 (308)
Q Consensus        99 KeIkWiGLPtns~q  112 (308)
                      |.|+|+|+|++++|
T Consensus        82 ~~i~W~g~~~~~~~   95 (95)
T 1cf7_B           82 KEIKWIGLPTNSAQ   95 (95)
T ss_dssp             SCEEBCCCC-----
T ss_pred             CEEEEecCCccccC
Confidence            99999999999865

>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17

Probab=96.51  E-value=0.00094  Score=51.47  Aligned_cols=58  Identities=22%  Similarity=0.341  Sum_probs=43.2

Q ss_pred             ccCcchhhhhHHHHHHHhh--cCCcchHHHHHHHHH-hhhcc----c---Cccccccc-CccEEEecCC
Q psy9354          50 KASKGLRHFSMKVCEKVRR--KGVTTYNEVADELVQ-EFSED----H---NTASSEQE-KKEIKWLGLP  107 (308)
Q Consensus        50 k~~kGLRhfSmKVcEKVqe--Kg~TTYnEVADELV~-E~~~~----~---~i~IIsKe-KKeIkWiGLP  107 (308)
                      +..++|..++.++++.+++  .+..+++++|++|.- +-.--    |   .+++|+|. |..|+|+|+.
T Consensus         7 R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W~G~~   75 (76)
T 1cf7_A            7 RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVG   75 (76)
T ss_dssp             TTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC---
T ss_pred             CccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEEeCCC
Confidence            4567999999999999997  578999999999965 21100    0   46899996 7789999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	308
d2azea1	148	e.63.1.1 (A:199-346) Transcription factor DP-1 {Hu	1e-57
d1cf7b_	82	a.4.5.17 (B:) Cell cycle transcription factor DP-2	1e-18

>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 148

class: Multi-domain proteins (alpha and beta)
fold: E2F-DP heterodimerization region
superfamily: E2F-DP heterodimerization region
family: DP dimerization segment
domain: Transcription factor DP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  180 bits (458), Expect = 1e-57
 Identities = 76/139 (54%), Positives = 100/139 (71%), Gaps = 1/139 (0%)

Query: 112 QESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGE-PAPSSAIQL 170
           QE  NL  ER++ ++RI QK   L +L+LQQI+ K L+Q+N  +E+     P P+S I L
Sbjct: 2   QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHL 61

Query: 171 PFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDL 230
           PF+IV+T KKTVIDCS+SNDK EYLF FDN FEIHDDIE+LKRMG+  GL+ G  + EDL
Sbjct: 62  PFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDL 121

Query: 231 QEAKRLVAPCMEKYVNQIA 249
           + A+ LV   +E YV ++A
Sbjct: 122 KMARSLVPKALEPYVTEMA 140

>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor DP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (189), Expect = 1e-18
 Identities = 40/81 (49%), Positives = 48/81 (59%), Gaps = 26/81 (32%)

Query: 53  KGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDHNTASSEQ---------------- 96
           KGLRHFSMKVCEKV+RKG T+YNEVADELV EF+  +N  +++                 
Sbjct: 2   KGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALN 61

Query: 97  ----------EKKEIKWLGLP 107
                     EKKEIKW+GLP
Sbjct: 62  VLMAMNIISKEKKEIKWIGLP 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	308
d2azea1	148	Transcription factor DP-1 {Human (Homo sapiens) [T	100.0
d1cf7b_	82	Cell cycle transcription factor DP-2 {Human (Homo	99.92

>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: E2F-DP heterodimerization region
superfamily: E2F-DP heterodimerization region
family: DP dimerization segment
domain: Transcription factor DP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-58  Score=396.08  Aligned_cols=144  Identities=53%  Similarity=0.833  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-cCCCCCCCccccceEEEEcCCCCeEEeeeec
Q psy9354         111 LQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKI-HGEPAPSSAIQLPFLIVSTDKKTVIDCSMSN  189 (308)
Q Consensus       111 ~qe~~~Le~ek~k~~erIkqKk~~LqELi~Q~iA~KnLV~RNk~~e~~-~~~~~~~~~I~LPFIlV~Tsk~t~IdCeiS~  189 (308)
                      +|+|++|+.|+.++++||++|+++||||++|++||||||+||+.+++. +++|+++++|+||||||+|+++|+|||+||+
T Consensus         1 aQe~~~Le~E~~~~~erI~~K~~~LqeLi~Q~iafknLV~RN~~~e~~~~~~~~~~~~I~LPFIiV~T~~~t~IdceISe   80 (148)
T d2azea1           1 AQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISN   80 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCGGGEEESSCEEEEEESSCCEEEEECT
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCCCeeecCEEEEecCCCCEEEEEEcc
Confidence            589999999999999999999999999999999999999999999984 5678889999999999999999999999999


Q ss_pred             CcceEEEEcCCceeeeccHHHHHHhhccCCCCCCCCCHHHHHHHHhccchhhHHHHHHHhhcCCC
Q psy9354         190 DKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYNDGL  254 (308)
Q Consensus       190 Dk~ey~F~F~~~FEIhDD~eILK~Mgl~~gLe~g~~s~edl~~ak~lvPk~l~~yv~~~~~~~~~  254 (308)
                      |+++|+|+||++||||||++|||+|||++||++|+||+||++.||+||||+|++||++||+|+..
T Consensus        81 Dk~~y~F~Fn~tFeIhDD~~VLK~Mgl~~gl~~g~~s~e~~~~ak~~vP~~l~~yv~~~~~g~~~  145 (148)
T d2azea1          81 DKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDLKMARSLVPKALEPYVTEMAQGTVG  145 (148)
T ss_dssp             TSSEEEEEESSCEEEEEHHHHHHHTTTTTTGGGTCCCHHHHHHHHHTSCGGGHHHHHHHHHTTTC
T ss_pred             cceeEEecCCCCeEEechHHHHHHHHHHhCCCCCCCCHHHHHHHHHhCChhHHHHHHHHccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999764

>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor DP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.6e-27  Score=182.68  Aligned_cols=56  Identities=70%  Similarity=1.137  Sum_probs=52.4

Q ss_pred             CcchhhhhHHHHHHHhhcCCcchHHHHHHHHHhhhccc--------------------------CcccccccCccEEEec
Q psy9354          52 SKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDH--------------------------NTASSEQEKKEIKWLG  105 (308)
Q Consensus        52 ~kGLRhfSmKVcEKVqeKg~TTYnEVADELV~E~~~~~--------------------------~i~IIsKeKKeIkWiG  105 (308)
                      |||||||||+|||||++|++|||||||||||+||.++.                          +++||+||||+|+|+|
T Consensus         1 gkgLr~~S~kVcekV~~k~~TtY~eVAdeLv~e~~~~~~~~~~~~~~d~KNIRRRVYDALNVLmA~~II~K~kK~I~W~G   80 (82)
T d1cf7b_           1 GKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIG   80 (82)
T ss_dssp             CCHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCCCSSCEEBCC
T ss_pred             CccHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhccCCCcchhhcchhhhHHHHHHHHHHHHHhhhhhcCceeEeec
Confidence            68999999999999999999999999999999998754                          2479999999999999


Q ss_pred             CC
Q psy9354         106 LP  107 (308)
Q Consensus       106 LP  107 (308)
                      ||
T Consensus        81 lp   82 (82)
T d1cf7b_          81 LP   82 (82)
T ss_dssp             CC
T ss_pred             CC
Confidence            99