Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 67
PRK02106 560
PRK02106, PRK02106, choline dehydrogenase; Validat
8e-16 COG2303 542
COG2303, BetA, Choline dehydrogenase and related f
3e-15 TIGR01810 532
TIGR01810, betA, choline dehydrogenase
5e-13 pfam00732 218
pfam00732, GMC_oxred_N, GMC oxidoreductase
1e-11 TIGR03970 487
TIGR03970, Rv0697, dehydrogenase, Rv0697 family
7e-10
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated
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Score = 69.1 bits (170), Expect = 8e-16
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNL 56
GKV+GG++ +NG++Y RG++ DYD + +L G GW Y + LPYF K+E
Sbjct: 85 GKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRD 135
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
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Score = 67.5 bits (165), Expect = 3e-15
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEY-EKLGATGWGYKNVLPYFLKSEHNL 56
GKV+GG++ +NG++Y RG D+D + ++ GA GW Y +VLPYF ++E L
Sbjct: 84 GKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLL 134
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase
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Score = 61.0 bits (148), Expect = 5e-13
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKNVLPYFLKSEH 54
GKV+GG++ +NG++Y RG+ DY+++ K G W Y + LPY+ + E
Sbjct: 79 GKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLET 127
Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532
>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase
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Score = 56.1 bits (136), Expect = 1e-11
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 7 GKVMGGTTVLNGLMYCRGDSSDYDE-YEKLGATGWGYKNVLPYFLKSE 53
G +GG + +N R ++ DE + G GWGY + LPY K E
Sbjct: 24 GSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE 71
This family of proteins bind FAD as a cofactor. Length = 218
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family
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Score = 52.1 bits (125), Expect = 7e-10
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 4 IFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQY 58
I G+V+GG+ +NG +CR +D+D + GW + +VLP+F E +L +
Sbjct: 78 IVRGRVLGGSGAVNGGYFCRALPADFDAW---PIPGWSWDDVLPHFRAIETDLDF 129
This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
67
KOG1238|consensus 623
99.87 TIGR01810 532
betA choline dehydrogenase. This enzyme is a membe
99.75 PRK02106 560
choline dehydrogenase; Validated
99.72 COG2303 542
BetA Choline dehydrogenase and related flavoprotei
99.72 PF00732 296
GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001
99.7 PLN02785 587
Protein HOTHEAD
99.43 TIGR02462 544
pyranose_ox pyranose oxidase. Pyranose oxidase (al
96.65
>KOG1238|consensus
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Probab=99.87 E-value=7.3e-23 Score=154.30 Aligned_cols=59 Identities=42% Similarity=0.856 Sum_probs=55.8
Q ss_pred CccccccccccchhHhhcceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhhccCCC
Q psy939 1 MVKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYN 59 (67)
Q Consensus 1 ~~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g~~gWsw~~~~p~f~k~e~~~~~~ 59 (67)
.|.|||||||||||+||+|+|+||++.|||+|++.|++||+|++++|||+|+|+...|.
T Consensus 131 ~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~ 189 (623)
T KOG1238|consen 131 RCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPD 189 (623)
T ss_pred ceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCC
Confidence 47899999999999999999999999999999999999999999999999999886654
>TIGR01810 betA choline dehydrogenase
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Probab=99.75 E-value=7.5e-19 Score=128.64 Aligned_cols=56 Identities=38% Similarity=0.856 Sum_probs=52.6
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHh-cCCCCCChhhHHHHHHHhhhccC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKNVLPYFLKSEHNLQ 57 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~-~g~~gWsw~~~~p~f~k~e~~~~ 57 (67)
+.+++||+|||||+||+|+|+|+++.|||.|++ .|+++|+|++|+|||+|+|++..
T Consensus 74 ~~~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~ 130 (532)
T TIGR01810 74 VGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFG 130 (532)
T ss_pred EeeecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCC
Confidence 468999999999999999999999999999998 48999999999999999998865
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
>PRK02106 choline dehydrogenase; Validated
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Probab=99.72 E-value=3e-18 Score=126.25 Aligned_cols=56 Identities=43% Similarity=0.934 Sum_probs=52.8
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhhccC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQ 57 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~-g~~gWsw~~~~p~f~k~e~~~~ 57 (67)
+.+++||+|||||+||+|+|+|+++.|||.|+++ |+++|+|++|+|||+|+|++..
T Consensus 80 ~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~ 136 (560)
T PRK02106 80 MECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDG 136 (560)
T ss_pred eecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCC
Confidence 4678999999999999999999999999999998 9999999999999999998863
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
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Probab=99.72 E-value=3e-18 Score=127.04 Aligned_cols=56 Identities=43% Similarity=0.928 Sum_probs=52.6
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhhccC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQ 57 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~-g~~gWsw~~~~p~f~k~e~~~~ 57 (67)
+.++|||+|||||+||+|+|+|+++.|||.|++. |+++|+|++|+|||+|+|++..
T Consensus 79 ~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~ 135 (542)
T COG2303 79 LAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLG 135 (542)
T ss_pred ccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcC
Confidence 5689999999999999999999999999999987 8899999999999999998544
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]
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Probab=99.70 E-value=7.9e-18 Score=113.92 Aligned_cols=58 Identities=36% Similarity=0.731 Sum_probs=47.4
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhhccCCC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYN 59 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~-g~~gWsw~~~~p~f~k~e~~~~~~ 59 (67)
+.+++||+|||||+||+|+++|+++.||+.|+.. |.++|+|++|.|||+++|+++.++
T Consensus 72 ~~~~~G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~ 130 (296)
T PF00732_consen 72 INWPRGKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS 130 (296)
T ss_dssp EEEEEB-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB
T ss_pred eeeecceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc
Confidence 4577999999999999999999999999999998 889999999999999999776654
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
>PLN02785 Protein HOTHEAD
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Probab=99.43 E-value=4.2e-14 Score=106.11 Aligned_cols=49 Identities=27% Similarity=0.406 Sum_probs=44.8
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhhcc
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNL 56 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g~~gWsw~~~~p~f~k~e~~~ 56 (67)
+.++|||+|||||+||+|+|+|++++||++ .||+|+.+.|+|+++|+..
T Consensus 123 ~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~ 171 (587)
T PLN02785 123 VINARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQI 171 (587)
T ss_pred eeccccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccc
Confidence 468999999999999999999999999963 6899999999999999864
>TIGR02462 pyranose_ox pyranose oxidase
Back Show alignment and domain information
Probab=96.65 E-value=0.001 Score=50.43 Aligned_cols=49 Identities=10% Similarity=-0.075 Sum_probs=40.0
Q ss_pred cccccccchhHhhcceeccCChhhHHHHHhcCCCCC--ChhhHHHHHHHhhhccC
Q psy939 5 FDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGW--GYKNVLPYFLKSEHNLQ 57 (67)
Q Consensus 5 ~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g~~gW--sw~~~~p~f~k~e~~~~ 57 (67)
.|-|.|||+|.+=+....|-++++- .|. ..+| ++++|.|||.++|.+..
T Consensus 112 ar~R~vGGsS~hW~g~~~R~~p~~r-~g~---~~dWPI~y~eL~PyY~~Ae~~~g 162 (544)
T TIGR02462 112 AVTRGVGGMSTHWTCATPRFHREER-PKL---SDDAAEDDAEWDRLYTKAESLIG 162 (544)
T ss_pred heeeccCchhhhcCcccCCCCHHhc-cCC---CCCCCCCHHHHHHHHHHHHHHhC
Confidence 4678999999999999999998642 122 2689 99999999999999744
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 67
d1cf3a1 385
Glucose oxidase {Aspergillus niger [TaxId: 5061]}
99.78 d1gpea1 391
Glucose oxidase {Penicillium amagasakiense [TaxId:
99.77 d1kdga1 360
Flavoprotein domain of flavocytochrome cellobiose
99.53 d1ju2a1 351
Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI
99.47 d1n4wa1 367
Cholesterol oxidase of GMC family {Streptomyces sp
99.05 d3coxa1 370
Cholesterol oxidase of GMC family {Brevibacterium
98.89 d2f5va1 379
Pyranose 2-oxidase {White-rot fungus (Peniophora s
84.92
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}
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class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]
Probab=99.78 E-value=5.5e-20 Score=126.13 Aligned_cols=58 Identities=33% Similarity=0.616 Sum_probs=54.2
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhhccCCC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYN 59 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~-g~~gWsw~~~~p~f~k~e~~~~~~ 59 (67)
+.+++||+|||||+||+|+|+|+++.|||.|+++ ++++|+|++|+|||+|+|++..+.
T Consensus 90 ~~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~ 148 (385)
T d1cf3a1 90 ALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPN 148 (385)
T ss_dssp CEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCC
T ss_pred eeecccccccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhhcCCC
Confidence 4578999999999999999999999999999998 999999999999999999987654
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}
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class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]
Probab=99.77 E-value=1.2e-19 Score=125.20 Aligned_cols=57 Identities=35% Similarity=0.648 Sum_probs=53.7
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhhccCC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQY 58 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~-g~~gWsw~~~~p~f~k~e~~~~~ 58 (67)
+.+++||+|||||+||+|+|+|+++.||+.|+.. |+++|+|++++|||+|+|++..+
T Consensus 96 ~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~ 153 (391)
T d1gpea1 96 NNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTP 153 (391)
T ss_dssp CEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCC
T ss_pred eeeceeeccCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCC
Confidence 5689999999999999999999999999999987 99999999999999999988654
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
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class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=99.53 E-value=8.3e-16 Score=104.46 Aligned_cols=54 Identities=28% Similarity=0.486 Sum_probs=46.8
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhhccCC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQY 58 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g~~gWsw~~~~p~f~k~e~~~~~ 58 (67)
+.+++||+|||||+||+|+|+|+.+.||+.|. + -.|+|++++|||+|+|+..+.
T Consensus 80 ~~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~--g-wp~~~~~l~py~~~~e~~~~~ 133 (360)
T d1kdga1 80 ITVFAGCLVGGGTSVNGALYWYPNDGDFSSSV--G-WPSSWTNHAPYTSKLSSRLPS 133 (360)
T ss_dssp BSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGG--T-CCGGGSCCHHHHHHHHHHSCC
T ss_pred ccccceeeecchhccccccccccchhhheecc--c-ccccccchhhhhhhhhccccc
Confidence 46789999999999999999999999999884 1 124899999999999988654
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}
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class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=99.47 E-value=3.1e-15 Score=101.63 Aligned_cols=52 Identities=25% Similarity=0.485 Sum_probs=47.7
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhhccC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQ 57 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g~~gWsw~~~~p~f~k~e~~~~ 57 (67)
+.+++||+|||||+||+|+|+|+.+.|||.|. .+|+|+++.|||+++|....
T Consensus 95 ~~~~rG~~lGGsS~in~~~~~R~~~~dfd~~~----~~W~~~~~~p~~~~~e~~~~ 146 (351)
T d1ju2a1 95 IDNVRGRVLGGTSIINAGVYARANTSIYSASG----VDWDMDLVNQTYEWVEDTIV 146 (351)
T ss_dssp CEEEEECBTTGGGGTSCCEECBCCTTSSTTSS----SCCCHHHHHHHHHHHHHHHC
T ss_pred eeeeeeeecccccccceeeeccCCHHHHhhcc----cccChhHhCcceeecccccc
Confidence 56889999999999999999999999999984 78999999999999997644
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}
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class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]
Probab=99.05 E-value=2.1e-11 Score=80.90 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=46.0
Q ss_pred cccccccccchhHhhcceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhhccCC
Q psy939 3 KIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQY 58 (67)
Q Consensus 3 ~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g~~gWsw~~~~p~f~k~e~~~~~ 58 (67)
.+++|++|||+|.+|++++.|+++.||+.|.. ..|.++++.|||+++|+...+
T Consensus 97 ~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~---~~~~~~~l~pyy~~ae~~l~~ 149 (367)
T d1n4wa1 97 SVYVGRGVGGGSLVNGGMAVEPKRSYFEEILP---RVDSSEMYDRYFPRANSMLRV 149 (367)
T ss_dssp EEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT---TSCHHHHHHTHHHHHHHHHTC
T ss_pred ceeeEEecCCCCceecceeeccChhHhhcccc---ccCcHHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999963 345678899999999987654
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}
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class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]
Probab=98.89 E-value=2e-10 Score=76.33 Aligned_cols=54 Identities=20% Similarity=0.358 Sum_probs=45.5
Q ss_pred ccccccccccchhHhhcceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhhccCC
Q psy939 2 VKIFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQY 58 (67)
Q Consensus 2 ~~~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g~~gWsw~~~~p~f~k~e~~~~~ 58 (67)
+.+++|++|||+|.+|++++.|+++.||+.|.. ..+.++.+.|||+++|.....
T Consensus 100 ~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~---~~~~~~~~~~~y~~~e~~lgv 153 (370)
T d3coxa1 100 IKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILP---SVDSNEMYNKYFPRANTGLGV 153 (370)
T ss_dssp CEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT---TSCHHHHHHTHHHHHHHHHTC
T ss_pred ceeeeeccccccccccCceeccCCHHHhhcccc---cCCcHHHHHHHHHHHHHhcCC
Confidence 346789999999999999999999999999973 334567799999999987543
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}
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class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=84.92 E-value=0.017 Score=36.31 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=36.8
Q ss_pred ccccccccchhHhhcceeccCChhhHHHHHhcC--C--CCC--ChhhHHHHHHHhhhcc
Q psy939 4 IFDGKVMGGTTVLNGLMYCRGDSSDYDEYEKLG--A--TGW--GYKNVLPYFLKSEHNL 56 (67)
Q Consensus 4 ~~rGk~lGGsS~iN~~~~~rg~~~d~d~Wa~~g--~--~gW--sw~~~~p~f~k~e~~~ 56 (67)
+..++.+||++.++..++.|..+.||+.+.... . ..| +++.+.++|.+.+...
T Consensus 113 ~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T d2f5va1 113 QAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQF 171 (379)
T ss_dssp CEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHHHHHHHHTEESCTT
T ss_pred chhhhcCCCCccccccEeccCCHHHhhhccccCCCccCCcCccchhhhhhhhhHHHHHH
Confidence 346789999999999999999999986554311 0 112 4566777777665543
