Psyllid ID: psy9422

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MPSGCLPLKSLLLLICFESWQQEHVKFKTEVGPGTPNFKDRRVLIQGTQNFKVHQNRTRQEHVKLCERLKSTPPGPADRKLWISMTANGKYFHVGKRSLFKGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHcccEEEEEEEccccccccccEEEEEccccEEEEccHHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccccEEEEEccccccccccccccccccccccccccccccHHccccHHHHHHHHccccccccccEEEEEEccEEEEcccccccccEEEEEEcccHHHHHHHHHcccEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHcEEEcccccccccccccEEEEEcccccEEcccccHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccccEEccccccccccccccHHHHHHHcccccccEEEHHHHHHcccHHHHHHHHHcccccccEEEHHHcccEEEEcccccccccEEEEEHHHHHHHHHHHHHcccEEEEEc
Coil and Loop (DISEMBL)
mpsgclplkSLLLLICFESWQQEHVKFktevgpgtpnfkDRRVLIQGTQNFKVHQNRTRQEHVKLCErlkstppgpadrkLWISMTANgkyfhvgkrslfkghhqfniHQRHLTAFSIVLNMNMgivrrseerrvgeegrlLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKvlgkgripkqpviVKAKFFSKLAEEKIKAVGGACVLTA
Flexible Loop (DISEMBL)
MPSGCLPLKSLLLLICFESWQQEHVKFktevgpgtpnfKDRRVLIQGTqnfkvhqnrtrQEHVKlcerlkstppgpadrkLWISMTANGKYFHVGKRSLFKGHHQFNIHQRHLTAFSIVLNMNMGivrrseerrvgeegrllNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVlgkgripkqpVIVKAKFFSKLAEEKIkavggacvlta
Low Complexity Region (SEG)
MPSGClplksllllICFESWQQEHVKFKTEVGPGTPNFKDRRVLIQGTQNFKVHQNRTRQEHVKLCERLKSTPPGPADRKLWISMTANGKYFHVGKRSLFKGHHQFNIHQRHLTAFSIVLNMNMGIvrrseerrvgeegrLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA
Disordered region (IsUnstruct)
****CLPLKSLLLLICFESWQQEHVKFKTEVGPGTPNFKDRRVLIQGTQNFKVH**********L*************RKLWISMTANGKYFHVGKRSLFKGHHQFNIHQRHLTAFSIVLNMNMGIVRRSE**RVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVL**
Disordered Region (DISOPRED)
****CLPLKSLLLLICFESWQQEHVKFKTEVGPGTPNFKDRRVLIQGTQNFKVHQNRTR*EHVK***********************************FKGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRS*T***VLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA
Disordered Region (DISEMBL)
MPSGCLPLKSLLLLICFESWQQEHVKFKTEVGPGTPNFKDRRVLIQGTQNFKVHQNRTRQEHVKLCERLKSTPPGPADRKLWISMTANGKYFHVGKRSLFKGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA
Disordered Region (DISPRO)
***GCLPLKSLLLLICFESWQQEHVKFKTEVGPGTPNFKDRRVLIQGTQNFKVHQNRTRQEHVKLCERLKSTPPGPADRKLWISMTANGKYFHVGKRSLFKGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPSGCLPLKSLLLLICFESWQQEHVKFKTEVGPGTPNFKDRRVLIQGTQNFKVHQNRTRQEHVKLCERLKSTPPGPADRKLWISMTANGKYFHVGKRSLFKGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q5REY2	148	60S ribosomal protein L27	no	N/A	0.222	0.317	0.755	3e-14
P46776	148	60S ribosomal protein L27	yes	N/A	0.222	0.317	0.755	3e-14
Q56K03	148	60S ribosomal protein L27	yes	N/A	0.222	0.317	0.755	3e-14
Q4R723	148	60S ribosomal protein L27	N/A	N/A	0.222	0.317	0.755	3e-14
P18445	148	60S ribosomal protein L27	yes	N/A	0.222	0.317	0.755	3e-14
P47830	148	60S ribosomal protein L27	N/A	N/A	0.203	0.290	0.860	3e-14
P14115	148	60S ribosomal protein L27	yes	N/A	0.222	0.317	0.755	3e-14
Q5R1X0	148	60S ribosomal protein L27	yes	N/A	0.222	0.317	0.734	7e-14
Q00454	149	60S ribosomal protein L27	N/A	N/A	0.222	0.315	0.693	2e-12
O01358	145	60S ribosomal protein L27	N/A	N/A	0.203	0.296	0.767	1e-11

>sp|Q5REY2|RL27A_PONAB 60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 45/49 (91%), Gaps = 2/49 (4%)

Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK+VGGACVL A
Sbjct: 100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148

Pongo abelii (taxid: 9601)

>sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 45/49 (91%), Gaps = 2/49 (4%)

Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK+VGGACVL A
Sbjct: 100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148

Homo sapiens (taxid: 9606)

>sp|Q56K03|RL27A_BOVIN 60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 44/49 (89%), Gaps = 2/49 (4%)

Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK VGGACVL A
Sbjct: 100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

Bos taurus (taxid: 9913)

>sp|Q4R723|RL27A_MACFA 60S ribosomal protein L27a OS=Macaca fascicularis GN=RPL27A PE=2 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 44/49 (89%), Gaps = 2/49 (4%)

Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK VGGACVL A
Sbjct: 100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

Macaca fascicularis (taxid: 9541)

>sp|P18445|RL27A_RAT 60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 44/49 (89%), Gaps = 2/49 (4%)

Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK VGGACVL A
Sbjct: 100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

Rattus norvegicus (taxid: 10116)

>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a OS=Xenopus laevis GN=rpl27a PE=2 SV=2

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 169 AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           AGYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK+VGGACVL A
Sbjct: 106 AGYYKVLGKGKLPKQPVIVKAKFFSRKAEEKIKSVGGACVLGA 148

Xenopus laevis (taxid: 8355)

>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=2 SV=5

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 44/49 (89%), Gaps = 2/49 (4%)

Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK VGGACVL A
Sbjct: 100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

Mus musculus (taxid: 10090)

>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a OS=Pan troglodytes GN=RPL27A PE=2 SV=3

 Score = 77.0 bits (188), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 44/49 (89%), Gaps = 2/49 (4%)

Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK+VGGACVL  
Sbjct: 100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVG 148

Pan troglodytes (taxid: 9598)

>sp|Q00454|RL27A_TETTH 60S ribosomal protein L27a OS=Tetrahymena thermophila GN=RPL27A PE=1 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 43/49 (87%), Gaps = 2/49 (4%)

Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++D+  AG++KVLGKGR+P QPV+VKAK+FSK AE +I AVGGACVLTA
Sbjct: 101 VIDVTKAGFFKVLGKGRLPNQPVVVKAKYFSKTAERRIVAVGGACVLTA 149

Tetrahymena thermophila (taxid: 5911)

>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a OS=Oscheius brevesophaga GN=rpl-27a PE=3 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 37/43 (86%)

Query: 169 AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           AGY+KVLGKG +PKQP+IVKAKFFS  AE KIKA GGAC+L A
Sbjct: 103 AGYFKVLGKGLLPKQPLIVKAKFFSHEAENKIKAAGGACILVA 145

Oscheius brevesophaga (taxid: 57871)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
110671480	148	putative ribosomal protein L27Ae [Diapho	0.516	0.736	0.495	2e-15
307192847	90	60S ribosomal protein L27a [Harpegnathos	0.417	0.977	0.466	3e-14
161671326	148	60S ribosomal protein l27a [Lycosa singo	0.222	0.317	0.816	3e-14
91080583	148	PREDICTED: similar to ribosomal protein	0.222	0.317	0.836	5e-14
90820018	148	putative ribosomal protein L27Ae [Grapho	0.222	0.317	0.836	9e-14
70909819	148	ribosomal protein L27Ae [Agriotes lineat	0.222	0.317	0.836	1e-13
70909821	148	ribosomal protein L27Ae [Biphyllus lunat	0.222	0.317	0.816	1e-13
15213766	148	ribosomal protein L27A [Spodoptera frugi	0.421	0.601	0.466	2e-13
340722361	182	PREDICTED: 60S ribosomal protein L27a-li	0.222	0.258	0.795	2e-13
66526748	147	PREDICTED: 60S ribosomal protein L27a [A	0.222	0.319	0.795	2e-13

>gi|110671480|gb|ABG81991.1| putative ribosomal protein L27Ae [Diaphorina citri]

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/109 (49%), Positives = 62/109 (56%)

Query: 103 HHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALT 162
           HH+ N  + H   F  V   N  I + ++   +    RL  +     R            
Sbjct: 40  HHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAP 99

Query: 163 SLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
            +    AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA
Sbjct: 100 IIDCVKAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 148

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192847|gb|EFN75901.1| 60S ribosomal protein L27a [Harpegnathos saltator]

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 62/105 (59%), Gaps = 17/105 (16%)

Query: 107 NIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLV 166
           N H R  T +   LN++      SE+ R+              +   G+  ++ L     
Sbjct: 3   NYHLRRNTKWCPTLNLDKLWTLVSEQTRLK------------YKDVEGKAPVIDLVK--- 47

Query: 167 DIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
             AGYYK+LGKGR+PKQPVIVKAKFFSKLAE+KIKAVGGAC+L A
Sbjct: 48  --AGYYKLLGKGRLPKQPVIVKAKFFSKLAEDKIKAVGGACILCA 90

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161671326|gb|ABX75515.1| 60S ribosomal protein l27a [Lycosa singoriensis]

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 46/49 (93%), Gaps = 2/49 (4%)

Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++D+  AGYYKVLGKGR+P QPVIVKA+FFSKLAEEKIKAVGGAC+LTA
Sbjct: 100 VIDVVNAGYYKVLGKGRLPSQPVIVKARFFSKLAEEKIKAVGGACILTA 148

Source: Lycosa singoriensis

Species: Lycosa singoriensis

Genus: Lycosa

Family: Lycosidae

Order: Araneae

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080583|ref|XP_973590.1| PREDICTED: similar to ribosomal protein L27Ae [Tribolium castaneum] gi|270005809|gb|EFA02257.1| hypothetical protein TcasGA2_TC007920 [Tribolium castaneum]

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/49 (83%), Positives = 46/49 (93%), Gaps = 2/49 (4%)

Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++DI  AGYYK+LGKGR+PKQPVIVKAKFFSK AEEKIKAVGGACVL+A
Sbjct: 100 VIDIVKAGYYKLLGKGRLPKQPVIVKAKFFSKSAEEKIKAVGGACVLSA 148

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|90820018|gb|ABD98766.1| putative ribosomal protein L27Ae [Graphocephala atropunctata]

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/49 (83%), Positives = 45/49 (91%), Gaps = 2/49 (4%)

Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++D+  AGYYKVLGKGRIPKQPVIVKAKFFSK AE+KIKAVGGACVL A
Sbjct: 100 VIDVVKAGYYKVLGKGRIPKQPVIVKAKFFSKKAEDKIKAVGGACVLQA 148

Source: Graphocephala atropunctata

Species: Graphocephala atropunctata

Genus: Graphocephala

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909819|emb|CAJ17396.1| ribosomal protein L27Ae [Agriotes lineatus]

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/49 (83%), Positives = 45/49 (91%), Gaps = 2/49 (4%)

Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++DI  AGYYK+LGKGRIPKQPVIVKAKFFSK AE+KIKAVGGACVL A
Sbjct: 100 VIDIVKAGYYKLLGKGRIPKQPVIVKAKFFSKSAEDKIKAVGGACVLCA 148

Source: Agriotes lineatus

Species: Agriotes lineatus

Genus: Agriotes

Family: Elateridae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909821|emb|CAJ17397.1| ribosomal protein L27Ae [Biphyllus lunatus]

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 45/49 (91%), Gaps = 2/49 (4%)

Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++DI  AGYYK+LGKGR+P QPVIVKAKFFSK AE+KIKAVGGACVLTA
Sbjct: 100 VIDIVKAGYYKLLGKGRLPDQPVIVKAKFFSKSAEDKIKAVGGACVLTA 148

Source: Biphyllus lunatus

Species: Biphyllus lunatus

Genus: Biphyllus

Family: Biphyllidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|15213766|gb|AAK92158.1|AF400186_1 ribosomal protein L27A [Spodoptera frugiperda]

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 16/105 (15%)

Query: 107 NIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLV 166
           N H+R    F+ VLN++      SE+ R+              + AT     + + +++ 
Sbjct: 60  NYHERKNKLFNPVLNLDKLWTLVSEQARL--------------KYATATDGKVPVINIVK 105

Query: 167 DIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
             AGYYK+LGKG++PKQPVIVKAKFFSK AE+KIKAVGGACVL+A
Sbjct: 106 --AGYYKLLGKGKLPKQPVIVKAKFFSKTAEKKIKAVGGACVLSA 148

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722361|ref|XP_003399575.1| PREDICTED: 60S ribosomal protein L27a-like [Bombus terrestris]

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 46/49 (93%), Gaps = 2/49 (4%)

Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++D+  AGYYK+LGKGR+PKQPVIVKAKFFSKLAE+KIKAVGG CVL+A
Sbjct: 134 VIDLVKAGYYKLLGKGRLPKQPVIVKAKFFSKLAEDKIKAVGGVCVLSA 182

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66526748|ref|XP_624696.1| PREDICTED: 60S ribosomal protein L27a [Apis mellifera] gi|380014363|ref|XP_003691204.1| PREDICTED: 60S ribosomal protein L27a-like [Apis florea]

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 46/49 (93%), Gaps = 2/49 (4%)

Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++D+  AGYYK+LGKGR+PKQPVIVKAKFFSKLAE+KIKAVGG CVL+A
Sbjct: 99  VIDLVKAGYYKLLGKGRLPKQPVIVKAKFFSKLAEDKIKAVGGVCVLSA 147

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
ZFIN|ZDB-GENE-030131-8670	148	zgc:77235 "zgc:77235" [Danio r	0.222	0.317	0.775	9.8e-16
UNIPROTKB|E9PJD9	91	RPL27A "60S ribosomal protein	0.222	0.516	0.755	2e-15
UNIPROTKB|E9PLX7	113	RPL27A "60S ribosomal protein	0.222	0.415	0.755	2e-15
UNIPROTKB|P46776	148	RPL27A "60S ribosomal protein	0.222	0.317	0.755	2e-15
UNIPROTKB|G1K1B4	147	RPL27A "60S ribosomal protein	0.222	0.319	0.755	2.6e-15
UNIPROTKB|G3MWX5	148	G3MWX5 "Uncharacterized protei	0.222	0.317	0.755	2.6e-15
UNIPROTKB|Q56K03	148	RPL27A "60S ribosomal protein	0.222	0.317	0.755	2.6e-15
UNIPROTKB|E2RI34	148	RPL27A "Uncharacterized protei	0.222	0.317	0.755	2.6e-15
UNIPROTKB|F1RGC0	148	LOC100739437 "Uncharacterized	0.222	0.317	0.755	2.6e-15
RGD|1309771	148	Rpl27a "ribosomal protein L27a	0.222	0.317	0.755	2.6e-15

ZFIN|ZDB-GENE-030131-8670 zgc:77235 "zgc:77235" [Danio rerio (taxid:7955)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 38/49 (77%), Positives = 45/49 (91%)

Query:   165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
             ++D+  AGY+KVLGKG++PKQPVIVKAKFFS+ AEEKIK VGGACVLTA
Sbjct:   100 IIDVVRAGYFKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLTA 148

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|E9PJD9 RPL27A "60S ribosomal protein L27a" [Homo sapiens (taxid:9606)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 37/49 (75%), Positives = 45/49 (91%)

Query:   165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
             ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK+VGGACVL A
Sbjct:    43 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 91

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|E9PLX7 RPL27A "60S ribosomal protein L27a" [Homo sapiens (taxid:9606)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 37/49 (75%), Positives = 45/49 (91%)

Query:   165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
             ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK+VGGACVL A
Sbjct:    65 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 113

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|P46776 RPL27A "60S ribosomal protein L27a" [Homo sapiens (taxid:9606)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 37/49 (75%), Positives = 45/49 (91%)

Query:   165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
             ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK+VGGACVL A
Sbjct:   100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|G1K1B4 RPL27A "60S ribosomal protein L27a" [Bos taurus (taxid:9913)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query:   165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
             ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK VGGACVL A
Sbjct:    99 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 147

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|G3MWX5 G3MWX5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query:   165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
             ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK VGGACVL A
Sbjct:   100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q56K03 RPL27A "60S ribosomal protein L27a" [Bos taurus (taxid:9913)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query:   165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
             ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK VGGACVL A
Sbjct:   100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2RI34 RPL27A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query:   165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
             ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK VGGACVL A
Sbjct:   100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1RGC0 LOC100739437 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query:   165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
             ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK VGGACVL A
Sbjct:   100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1309771 Rpl27a "ribosomal protein L27a" [Rattus norvegicus (taxid:10116)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query:   165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
             ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK VGGACVL A
Sbjct:   100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0022626 "cytosolic ribosome" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	211
PTZ00160	147	PTZ00160, PTZ00160, 60S ribosomal protein L27a; Pr	2e-21
pfam00828	122	pfam00828, Ribosomal_L18e, Ribosomal protein L18e/	1e-11
PRK06419	148	PRK06419, rpl15p, 50S ribosomal protein L15P; Revi	3e-08
COG0200	152	COG0200, RplO, Ribosomal protein L15 [Translation,	3e-06
PRK04005	111	PRK04005, PRK04005, 50S ribosomal protein L18e; Pr	1e-05
PRK05592	146	PRK05592, rplO, 50S ribosomal protein L15; Reviewe	3e-05
COG1727	122	COG1727, RPL18A, Ribosomal protein L18E [Translati	0.004

>gnl|CDD|185489 PTZ00160, PTZ00160, 60S ribosomal protein L27a; Provisional

 Score = 85.8 bits (213), Expect = 2e-21
 Identities = 36/43 (83%), Positives = 41/43 (95%)

Query: 169 AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           AGY+KVLGKG +PKQPVIVKA++FSK AE+KIKAVGGACVLTA
Sbjct: 105 AGYFKVLGKGHLPKQPVIVKARYFSKKAEKKIKAVGGACVLTA 147

Length = 147

>gnl|CDD|216140 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/L15

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 167 DIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT 210
            +    KVLG G + K P+ VKA  FSK A EKI+  GG  VL 
Sbjct: 80  TVTDDVKVLGNGELTK-PLTVKALKFSKSAREKIEKAGGEVVLL 122

This family includes eukaryotic L18 as well as prokaryotic L15. Length = 122

>gnl|CDD|235799 PRK06419, rpl15p, 50S ribosomal protein L15P; Reviewed

 Score = 50.6 bits (122), Expect = 3e-08
 Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 169 AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT 210
            GY KVLG G++  +P+++KA  FS+ A EKI+A GG  VL+
Sbjct: 105 LGYDKVLGGGKV-TRPLVIKADAFSEKAIEKIEAAGGEVVLS 145

Length = 148

>gnl|CDD|223278 COG0200, RplO, Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 164 LLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++  +    KVLG G++ K   +      SK A EKI+A GG   L  
Sbjct: 105 VIRKLKDLVKVLGNGKLTKAVPVKVKAKASKSAIEKIEAAGGKVELIE 152

Length = 152

>gnl|CDD|235196 PRK04005, PRK04005, 50S ribosomal protein L18e; Provisional

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 173 KVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACV 208
           KVLG G++    V V A  FS+ A+EKI+  GG  +
Sbjct: 58  KVLGSGKLDH-KVTVAALSFSETAKEKIEEAGGKAL 92

Length = 111

>gnl|CDD|235523 PRK05592, rplO, 50S ribosomal protein L15; Reviewed

 Score = 42.0 bits (100), Expect = 3e-05
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 173 KVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT 210
           KVLG G + K  + VKA  FSK A+E I+A GG     
Sbjct: 110 KVLGNGELTK-KLTVKAHKFSKSAKEAIEAAGGKVEEI 146

Length = 146

>gnl|CDD|224641 COG1727, RPL18A, Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 173 KVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACV 208
           KVLG G++ K  V V A  FSK A EKI+  GG C+
Sbjct: 69  KVLGDGKLDK-KVTVAALRFSKTAREKIEEAGGECL 103

Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
PTZ00160	147	60S ribosomal protein L27a; Provisional	100.0
PRK06419	148	rpl15p 50S ribosomal protein L15P; Reviewed	100.0
KOG1742|consensus	147		100.0
TIGR01071	145	rplO_bact ribosomal protein L15, bacterial/organel	99.93
COG0200	152	RplO Ribosomal protein L15 [Translation, ribosomal	99.93
PRK05592	146	rplO 50S ribosomal protein L15; Reviewed	99.92
PF00828	129	Ribosomal_L18e: Ribosomal protein L18e/L15; InterP	99.9
KOG0846|consensus	274		99.43
PRK04005	111	50S ribosomal protein L18e; Provisional	99.41
COG1727	122	RPL18A Ribosomal protein L18E [Translation, riboso	98.77
PTZ00469	187	60S ribosomal subunit protein L18; Provisional	98.05
PTZ00195	198	60S ribosomal protein L18; Provisional	98.02
KOG1714|consensus	188		84.62

>PTZ00160 60S ribosomal protein L27a; Provisional

Probab=100.00  E-value=2.6e-40  Score=272.01  Aligned_cols=135  Identities=37%  Similarity=0.520  Sum_probs=115.8

Q ss_pred             eeeccccccchhhcc-ccccCCCCCCCCCCc-------eEEEeecCcceecCccccCCCCCCCCC-CCCCCceEEeEEec
Q psy9422          52 KVHQNRTRQEHVKLC-ERLKSTPPGPADRKL-------WISMTANGKYFHVGKRSLFKGHHQFNI-HQRHLTAFSIVLNM  122 (211)
Q Consensus        52 ~~~~~r~~rghvs~~-gri~k~r~~~~~rg~-------~~~~~~~g~~fe~Gq~~l~~PKrGF~n-~~~~~k~y~pvINL  122 (211)
                      +.+||||.||||||| |||++||+||||||.       |+||+++.        |.+++|+||++ |...++.|+|+|||
T Consensus         4 r~kK~rK~RG~rt~G~G~~gkhR~~~GGrG~AG~~kH~~~~~~ky~--------p~~fGK~Gfr~~~~~~~~~~~~~INl   75 (147)
T PTZ00160          4 RFKKCRKMRGHVSHGYGRVGKHRKHPGGRGNAGGQHHHRINFDKYH--------PGYFGKVGMRHFHLKKNKYYCPTINV   75 (147)
T ss_pred             ccccccCCCCCCccCCCCCCCCCCCCCCCcccCCCcceEEEeeecC--------CCccCCCCccCCccccccccCceeEH
Confidence            678999999999999 999999999999996       99999976        56778888875 44446677889999


Q ss_pred             hhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCCceEEEEecccHHHHHHHHH
Q psy9422         123 NMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKA  202 (211)
Q Consensus       123 ~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEa  202 (211)
                      ++||+++++...+         +++   +.++.+|     |||+.+++|+||||+|+|+++|++|+|++||++|+||||+
T Consensus        76 ~~L~~lv~~~~~~---------~~a---~~~~~~~-----vIDl~~~g~~KVLG~G~l~~~~v~Vka~~~Sk~A~ekIe~  138 (147)
T PTZ00160         76 DKLWSLVPEETRY---------KYA---KKGDKAP-----VIDVTKAGYFKVLGKGHLPKQPVIVKARYFSKKAEKKIKA  138 (147)
T ss_pred             HHHHHHhHHHHHH---------hhh---hccCCce-----EEEeeccCceEEecCCeEcCccEEEEEeecCHHHHHHHHH
Confidence            9999998774332         344   3455667     9999999999999999995379999999999999999999


Q ss_pred             cCCEEEEcC
Q psy9422         203 VGGACVLTA  211 (211)
Q Consensus       203 AGG~V~lia  211 (211)
                      |||+|+++|
T Consensus       139 aGG~v~l~a  147 (147)
T PTZ00160        139 VGGACVLTA  147 (147)
T ss_pred             cCCEEEEcC
Confidence            999999986

>PRK06419 rpl15p 50S ribosomal protein L15P; Reviewed

Probab=100.00  E-value=9.1e-39  Score=262.43  Aligned_cols=132  Identities=25%  Similarity=0.351  Sum_probs=118.0

Q ss_pred             eeeccccccchhhcc-ccccCCCC--CCCCCCc-------eEEEeecCcceecCccccCCCCCCCCCCCCCCceEEeEEe
Q psy9422          52 KVHQNRTRQEHVKLC-ERLKSTPP--GPADRKL-------WISMTANGKYFHVGKRSLFKGHHQFNIHQRHLTAFSIVLN  121 (211)
Q Consensus        52 ~~~~~r~~rghvs~~-gri~k~r~--~~~~rg~-------~~~~~~~g~~fe~Gq~~l~~PKrGF~n~~~~~k~y~pvIN  121 (211)
                      +.+||||.||||||| |++++||+  ||||||+       |+||++++        |.|+||+||+++...+..|. +||
T Consensus         4 ~~~k~rk~RG~~t~G~G~~~~~R~~G~~GGrG~aG~~~h~~~~~~k~~--------p~~fpK~GF~~~~~~~~~~~-~IN   74 (148)
T PRK06419          4 KKKKSRKLRGSRTHGGGTHKNHRGAGSRGGRGMAGRHKHKWTWVVKYG--------PDWYGKHGFKRPPKLIKEVS-TIN   74 (148)
T ss_pred             ccccccCCCcCCCcCCCCcCcCCCCCCCCCCcccCCCcccceEeeeeC--------CCCCCCCCccCCCcCcceee-eEE
Confidence            578999999999999 99999999  9999986       99999988        67999999999754456787 899


Q ss_pred             chhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCCceEEEEecccHHHHHHHH
Q psy9422         122 MNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIK  201 (211)
Q Consensus       122 L~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIE  201 (211)
                      |++||+++         +.|.+.+++   +.++..+     +||+.+.+|+||||+|+++ +||+|+|++||++|+||||
T Consensus        75 L~~L~~l~---------~~l~~~g~i---~~~~~~~-----vid~~~~g~~KVLG~G~l~-~pl~Vka~~fS~~A~ekIe  136 (148)
T PRK06419         75 VGELDELA---------DLLKAEGKA---EEEDGKI-----VVDLTELGYDKVLGGGKVT-RPLVIKADAFSEKAIEKIE  136 (148)
T ss_pred             HHHHHHhH---------HHHHHCCcc---cccCCcc-----eeeeccCCceEEeCCCccC-cCEEEEEeccCHHHHHHHH
Confidence            99999885         346677786   4556667     9999999999999999999 8999999999999999999


Q ss_pred             HcCCEEEEc
Q psy9422         202 AVGGACVLT  210 (211)
Q Consensus       202 aAGG~V~li  210 (211)
                      +|||+|+++
T Consensus       137 ~aGG~v~l~  145 (148)
T PRK06419        137 AAGGEVVLS  145 (148)
T ss_pred             HcCCEEEEe
Confidence            999999986

>KOG1742|consensus

Probab=100.00  E-value=1.1e-36  Score=248.48  Aligned_cols=135  Identities=39%  Similarity=0.567  Sum_probs=122.0

Q ss_pred             eeeccccccchhhcc-ccccCCCCCCCCCCc-----eEEEee--cCcceecCccccCCCCCCCCCCCCCCceEEeEEech
Q psy9422          52 KVHQNRTRQEHVKLC-ERLKSTPPGPADRKL-----WISMTA--NGKYFHVGKRSLFKGHHQFNIHQRHLTAFSIVLNMN  123 (211)
Q Consensus        52 ~~~~~r~~rghvs~~-gri~k~r~~~~~rg~-----~~~~~~--~g~~fe~Gq~~l~~PKrGF~n~~~~~k~y~pvINL~  123 (211)
                      .++||||+|||||+| |||+||||||||||+     +|+|++  ||||.++||+.         +|...++.|+|+||||
T Consensus         4 ~~rKTrKLrGHVShGhgrigKhrkhpgGrg~agghhr~~fdKyhpgyfgkvgmr~---------yh~~rn~~~~P~vnld   74 (147)
T KOG1742|consen    4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGHHHRINFDKYHPGYFGKVGMRH---------YHLKRNQSFCPTVNLD   74 (147)
T ss_pred             hhhHHHHhhcccccccccccccccCCCCccccCCcccccccccCCCcccccchhH---------HHHhhccCcCCcccHH
Confidence            578999999999999 999999999999986     899955  89999999999         6666788999999999


Q ss_pred             hhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCC-CCceEEEEecccHHHHHHHHH
Q psy9422         124 MGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIP-KQPVIVKAKFFSKLAEEKIKA  202 (211)
Q Consensus       124 kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs-~kpVtVkA~~fSksAkEKIEa  202 (211)
                      +||.++++++.++         +.  ..+++.+|     |||+...||.||||+|.++ .+||+|+|.+||+.|+|+|.+
T Consensus        75 kLWtlv~~~~~~~---------~~--~~k~g~aP-----vidv~~~Gy~kvlGkgklp~~~PvIVKak~~s~~AeekIk~  138 (147)
T KOG1742|consen   75 KLWTLVREQTRVK---------AA--KNKTGAAP-----VIDVVQSGYYKVLGKGKLPEETPVIVKAKYFSRRAEEKIKK  138 (147)
T ss_pred             HHHHhhhHHHHHH---------Hh--ccCCCCCc-----eeeeeecceeEeeccccCCCCCcEEEeccccCccchHHHHh
Confidence            9999999987765         32  23456678     9999999999999999999 899999999999999999999


Q ss_pred             cCCEEEEcC
Q psy9422         203 VGGACVLTA  211 (211)
Q Consensus       203 AGG~V~lia  211 (211)
                      +||.|++++
T Consensus       139 ~gg~~~~~~  147 (147)
T KOG1742|consen  139 AGGAVVLTA  147 (147)
T ss_pred             cCceeeecC
Confidence            999999875

>TIGR01071 rplO_bact ribosomal protein L15, bacterial/organelle

Probab=99.93  E-value=3.3e-26  Score=186.92  Aligned_cols=99  Identities=24%  Similarity=0.355  Sum_probs=82.1

Q ss_pred             eecCcceecCccccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccc
Q psy9422          86 TANGKYFHVGKRSLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTS  163 (211)
Q Consensus        86 ~~~g~~fe~Gq~~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gv  163 (211)
                      .++|  ||+||||||  +||+||+++. ++.+|. +|||++|+++++++..++ ++.|.+.++                 
T Consensus        45 ~~~g--fEGGQ~Pl~rrlPK~GF~~~~-~~~~~~-~VNL~~L~~~~~~g~~i~-~~~L~~~gl-----------------  102 (145)
T TIGR01071        45 VRRG--FEGGQMPLYRRLPKRGFSNKR-FKKEYA-EVNLGKLAKLFPNGEVVT-LETLKEKGL-----------------  102 (145)
T ss_pred             CCCe--ecCCCCceEEECCCCCCCCcc-cCccee-EEEHHHHhhhhhcCCEec-HHHHhhCcc-----------------
Confidence            4444  999999999  7999999863 468898 799999999887765565 555555444                 


Q ss_pred             eeeecccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEE
Q psy9422         164 LLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACV  208 (211)
Q Consensus       164 Idl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~  208 (211)
                      |+ ...+|+||||+|+++ ++|+|+|++||++|+|+||+|||+|+
T Consensus       103 i~-~~~~~vKvLg~G~l~-~~l~I~a~~~S~sA~ekIE~aGG~v~  145 (145)
T TIGR01071       103 IT-KKIKFVKVLGNGKLT-KPLTVKAHRVSKSAKAAIEAAGGSVE  145 (145)
T ss_pred             Cc-CCCCceEEeCCCCcC-cCEEEEEEEECHHHHHHHHHcCCEEC
Confidence            44 334679999999999 89999999999999999999999984

>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=8.3e-26  Score=187.08  Aligned_cols=136  Identities=22%  Similarity=0.178  Sum_probs=104.3

Q ss_pred             eccccccc-hhhcc-ccccCCC--CCCCCCCceEEEeecC-----cceecCccccC--CCCCCCCCCCCCCc-eEEeEEe
Q psy9422          54 HQNRTRQE-HVKLC-ERLKSTP--PGPADRKLWISMTANG-----KYFHVGKRSLF--KGHHQFNIHQRHLT-AFSIVLN  121 (211)
Q Consensus        54 ~~~r~~rg-hvs~~-gri~k~r--~~~~~rg~~~~~~~~g-----~~fe~Gq~~l~--~PKrGF~n~~~~~k-~y~pvIN  121 (211)
                      ++-...|| +.+++ +..+.||  +..+|||.--.--++|     ..||+||||||  +||+||+|+. +.. +|. +||
T Consensus         4 ~~l~~~~G~~~~~~rvgrG~~sG~Gkt~GRG~kGqkaRsg~~~~~~gfeGgq~Pl~rrlpK~GF~~~~-~~~~~~~-~vn   81 (152)
T COG0200           4 NDLKPARGSKKTRKRVGRGIGSGLGKTGGRGHKGQKARSGHKWVRPGFEGGQMPLYRRLPKRGFTNSK-FKKVEYA-VVN   81 (152)
T ss_pred             cccCcCCCCccccCCcccCCCCCCCCCCCCCCCCCccccCCceecceeecCCcchhhhcCCCCCcccc-cccccee-EEE
Confidence            33334778 77777 8889998  7788998622211111     34889999999  8999999832 445 898 799


Q ss_pred             chhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCCceEEEEe-cccHHHHHHH
Q psy9422         122 MNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAK-FFSKLAEEKI  200 (211)
Q Consensus       122 L~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~-~fSksAkEKI  200 (211)
                      +++|++++++...++ .+.|.+.+++   .             +.. .. +||||+|+|+ +++.|++. .||++|+|+|
T Consensus        82 ~~~l~~~~~~~~~v~-~~~l~~~~~i---~-------------~~~-~~-vKvLg~G~l~-~~~~~~v~a~~S~~A~ekI  141 (152)
T COG0200          82 LGKLAELLPEGEEVT-LASLKAAGVI---R-------------KLK-DL-VKVLGNGKLT-KAVPVKVKAKASKSAIEKI  141 (152)
T ss_pred             HHHhhhhcccccccc-HHHHhhCCeE---e-------------ccc-cc-cEEeccCeec-cceeEEEEeeeCHHHHHHH
Confidence            999999998887776 7788877775   1             111 12 8999999999 77777777 9999999999


Q ss_pred             HHcCCEEEEcC
Q psy9422         201 KAVGGACVLTA  211 (211)
Q Consensus       201 EaAGG~V~lia  211 (211)
                      |+|||+|+++.
T Consensus       142 e~aGG~v~~~~  152 (152)
T COG0200         142 EAAGGKVELIE  152 (152)
T ss_pred             HHcCCEEEecC
Confidence            99999999863

>PRK05592 rplO 50S ribosomal protein L15; Reviewed

Probab=99.92  E-value=6e-25  Score=180.32  Aligned_cols=96  Identities=28%  Similarity=0.297  Sum_probs=80.9

Q ss_pred             ceecCccccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeec
Q psy9422          91 YFHVGKRSLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDI  168 (211)
Q Consensus        91 ~fe~Gq~~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~  168 (211)
                      .||+||||||  +||+||+|+  ++.+|. +|||++|+.+ +++..++ +++|++.+++   ..              ..
T Consensus        49 gFEGGQ~Pl~rrlPk~Gf~~~--~~~~y~-~VNL~~L~~~-~~~~~I~-~~~L~~~gli---~~--------------~~  106 (146)
T PRK05592         49 GFEGGQMPLYRRLPKRGFTNI--FRKEYA-VVNLGDLNKF-EEGTEVT-LEALKAAGLI---RK--------------NI  106 (146)
T ss_pred             ccccCCCceEEEcccCCcCCC--CcceEE-EEeHHHhhcc-CCCCeEC-HHHHHHCCcc---cC--------------CC
Confidence            3999999999  799999997  468999 7999999974 4445565 7888888876   11              11


Q ss_pred             ccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422         169 AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT  210 (211)
Q Consensus       169 ~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~li  210 (211)
                       .++||||+|+|+ ++|+|+|+.||++|+|+||+|||+|+++
T Consensus       107 -~~vKvLg~G~l~-~~i~I~a~~~S~sA~e~IE~aGG~v~~~  146 (146)
T PRK05592        107 -KGVKVLGNGELT-KKLTVKAHKFSKSAKEAIEAAGGKVEEI  146 (146)
T ss_pred             -cceEEEecCccc-cCEEEEEEccCHHHHHHHHHcCCEEEeC
Confidence             239999999999 9999999999999999999999999864

>PF00828 Ribosomal_L18e: Ribosomal protein L18e/L15; InterPro: IPR021131 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.90  E-value=5.8e-25  Score=174.64  Aligned_cols=122  Identities=26%  Similarity=0.319  Sum_probs=88.0

Q ss_pred             ccccCCCCC--CCCCCceEEEeecCcceecCccccC--CCCCCCCCCCC--CCceEEeEEechhhhhhhcccceechhhH
Q psy9422          67 ERLKSTPPG--PADRKLWISMTANGKYFHVGKRSLF--KGHHQFNIHQR--HLTAFSIVLNMNMGIVRRSEERRVGEEGR  140 (211)
Q Consensus        67 gri~k~r~~--~~~rg~~~~~~~~g~~fe~Gq~~l~--~PKrGF~n~~~--~~k~y~pvINL~kL~~li~~~~~v~~~~~  140 (211)
                      |++++||++  +|+|+. .-..+.-..||+||+|+|  +||+||+++..  .+.+|. +|||++|+++++......    
T Consensus         1 G~~gkt~grG~kG~~~r-sG~~~~~~~feggq~pl~rr~pK~Gf~~~~~~~~~~~~~-~vnL~~L~~~i~~~~~~~----   74 (129)
T PF00828_consen    1 GRKGKTRGRGHKGGRGR-SGGHKHRPGFEGGQMPLYRRLPKRGFNNPHLRKNRREYP-PVNLSKLQELIEKLKIDG----   74 (129)
T ss_dssp             SSSSSSSSSSSSSSSSS-TTTSSTSSHHHHHHSHHHHHSSSSSHHHCCHCSGTCCCE-EEEHHHHHHHTTTSSSSS----
T ss_pred             CCCCccCcccCCCCCCC-CCCCCCCchhcccccccccccCcccccccccccCcceeE-eeeHHHHHHHHHhccccc----
Confidence            677777766  444432 111223346899999999  99999997432  235777 799999999887643331    


Q ss_pred             HhhCccceeeccchhhHHHhccceeeec-ccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422         141 LLNMNMGIVRSATGRQVLLALTSLLVDI-AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT  210 (211)
Q Consensus       141 L~~~Gl~~~~~k~~~~~l~~~gvIdl~~-~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~li  210 (211)
                           .     .++...     ++++.. .+|+||||+|+++ .||+|+|+.||++|+|+||+|||+|++.
T Consensus        75 -----~-----~~~~~~-----~~~~~~~~~~~KvLg~G~l~-~~l~I~a~~~S~~A~ekIe~aGG~v~~~  129 (129)
T PF00828_consen   75 -----T-----EIDGKI-----LVDAGLIKGYVKVLGKGELT-KPLTIKAHRFSKSAKEKIEAAGGEVVTF  129 (129)
T ss_dssp             -----C-----ECTTSE-----EEECCEESSEEEEESSSSSS-SSEEEEESEETHHHHHHHHHTSEEEEEH
T ss_pred             -----c-----ccCCce-----eeeccccccceeeeccCCcc-cceEEEEEecCHHHHHHHHHcCCEEEeC
Confidence                 0     112223     334333 3789999999999 9999999999999999999999999873

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents both L15 and L18e ribosomal proteins, which share a common structure consisting mainly of parallel beta sheets (beta-alpha-beta units) with a core of three turns of irregular (beta-beta-alpha)n superhelix [, ].; PDB: 3O58_Y 1S1I_V 3O5H_Y 3IZS_O 3IZR_R 2OTL_L 1M1K_M 3G6E_L 1VQ9_L 1YIT_L ....

>KOG0846|consensus

Probab=99.43  E-value=2.4e-13  Score=120.84  Aligned_cols=98  Identities=15%  Similarity=0.144  Sum_probs=75.2

Q ss_pred             ceecCccccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccce-----echhhHHhhCccceeeccchhhHHHhccc
Q psy9422          91 YFHVGKRSLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERR-----VGEEGRLLNMNMGIVRSATGRQVLLALTS  163 (211)
Q Consensus        91 ~fe~Gq~~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~-----v~~~~~L~~~Gl~~~~~k~~~~~l~~~gv  163 (211)
                      .||+||+|++  +||.||.+..  ...|. .++|.+|+.+++.+..     ++ +.+|.+.|++   ....         
T Consensus        68 GfEgGqtP~yrr~Pk~~~~~~~--~r~~~-pl~L~rlq~lID~grid~~q~Id-m~tL~~~g~i---~p~~---------  131 (274)
T KOG0846|consen   68 GFEGGQTPLYRRFPKFGFGNGG--RRQYL-PLSLGRLQKLIDTGRIDPSQPID-MKTLKDSGLI---NPKG---------  131 (274)
T ss_pred             ccccCCchhHHhcccccccccc--cccCC-cccHHHHHHHHHhcCCCccCcee-HHHHHhccCC---Cccc---------
Confidence            4999999999  7999999874  47898 5999999999876543     43 5566666643   1111         


Q ss_pred             eeeecccceEEe--ccccCCCCceEEEEecccHHHHHHHHHcCCEEEE
Q psy9422         164 LLVDIAGYYKVL--GKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVL  209 (211)
Q Consensus       164 Idl~~~GyvKVL--G~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~l  209 (211)
                         .+.| +.+.  |.++++ -+|.|+|..+|..|+++||+|||+|..
T Consensus       132 ---~eyG-v~L~~~G~d~~~-~~i~iEvs~aS~~AiaaIEkaGG~vtt  174 (274)
T KOG0846|consen  132 ---REYG-VQLTADGADEFK-AKINIEVSRASVQAIAAIEKAGGSVTT  174 (274)
T ss_pred             ---cccC-ceeeccCCcccc-ceEEEEehhhhHHHHHHHHhcCCeEEE
Confidence               1233 5555  456787 899999999999999999999999975

>PRK04005 50S ribosomal protein L18e; Provisional

Probab=99.41  E-value=1.5e-13  Score=108.95  Aligned_cols=71  Identities=27%  Similarity=0.299  Sum_probs=55.8

Q ss_pred             CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccC
Q psy9422         101 KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRI  180 (211)
Q Consensus       101 ~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeL  180 (211)
                      +++| |..+   +.+|. +|||++|+.+..++.                             +++.    .+||||+|++
T Consensus        24 v~~r-l~~~---r~~y~-vVNL~~L~~~~~~~~-----------------------------vv~~----~~KVLg~G~l   65 (111)
T PRK04005         24 VAER-LEKP---RRRRA-EVNLSKINRYAKEGD-----------------------------TVVV----PGKVLGSGKL   65 (111)
T ss_pred             HHHH-HhCC---CCccc-eEEHHHHHhhccCCC-----------------------------EEEE----eeEEEcCceE
Confidence            5676 5444   36899 799999986542321                             1111    2899999999


Q ss_pred             CCCceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422         181 PKQPVIVKAKFFSKLAEEKIKAVGGACVLT  210 (211)
Q Consensus       181 s~kpVtVkA~~fSksAkEKIEaAGG~V~li  210 (211)
                      + ++++|+|+.||++|+++||+|||+|+++
T Consensus        66 ~-k~l~V~a~~~Sk~A~ekIe~aGG~v~~~   94 (111)
T PRK04005         66 D-HKVTVAALSFSETAKEKIEEAGGKALTI   94 (111)
T ss_pred             c-CCEEEEEeecCHHHHHHHHHcCCEEEEH
Confidence            9 8999999999999999999999999874

>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=1.1e-08  Score=82.53  Aligned_cols=61  Identities=34%  Similarity=0.394  Sum_probs=49.9

Q ss_pred             eEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCCceEEEEecccH
Q psy9422         115 AFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSK  194 (211)
Q Consensus       115 ~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~~fSk  194 (211)
                      .++ .|||++|+++..++..+          ++         |              -||||.|.+. ++++|-|-.||+
T Consensus        45 ~ra-~VnlsKI~r~ak~~d~v----------vV---------p--------------GkVLg~g~l~-~kVtVaAl~FS~   89 (122)
T COG1727          45 NRA-EVNVSKINRYAKEGDTV----------VV---------P--------------GKVLGDGKLD-KKVTVAALRFSK   89 (122)
T ss_pred             cCC-ceeHHHHHhhcCCCCEE----------EE---------e--------------eeEecCcccc-cceEEEEEecCH
Confidence            556 69999999886543222          11         1              4999999999 999999999999


Q ss_pred             HHHHHHHHcCCEEEEc
Q psy9422         195 LAEEKIKAVGGACVLT  210 (211)
Q Consensus       195 sAkEKIEaAGG~V~li  210 (211)
                      +|.+||++|||+|.-+
T Consensus        90 ~A~~KI~~aGGe~~tl  105 (122)
T COG1727          90 TAREKIEEAGGECLTL  105 (122)
T ss_pred             HHHHHHHHcCCeEeeH
Confidence            9999999999999753

>PTZ00469 60S ribosomal subunit protein L18; Provisional

Probab=98.05  E-value=6.4e-06  Score=70.92  Aligned_cols=38  Identities=24%  Similarity=0.346  Sum_probs=34.3

Q ss_pred             eEEeccccCC-CCceEEEEecccHHHHHHHHHcCCEEEE
Q psy9422         172 YKVLGKGRIP-KQPVIVKAKFFSKLAEEKIKAVGGACVL  209 (211)
Q Consensus       172 vKVLG~GeLs-~kpVtVkA~~fSksAkEKIEaAGG~V~l  209 (211)
                      -||||+|.|. -.+++|-|-.||++|+++|++|||+|.-
T Consensus        83 GkVl~dgrl~~vpkvtVaAL~fS~~Ar~kI~~AGGe~lT  121 (187)
T PTZ00469         83 GSITDDKRLYDCKKLKVCALRFTETARKRILDAGGECLT  121 (187)
T ss_pred             eeEccCccccccCceEEEEEecCHHHHHHHHHhCCEEEe
Confidence            4999999986 2489999999999999999999999975

>PTZ00195 60S ribosomal protein L18; Provisional

Probab=98.02  E-value=5.7e-06  Score=71.69  Aligned_cols=37  Identities=38%  Similarity=0.472  Sum_probs=34.8

Q ss_pred             eEEeccccCCCC--ceEEEEecccHHHHHHHHHcCCEEEE
Q psy9422         172 YKVLGKGRIPKQ--PVIVKAKFFSKLAEEKIKAVGGACVL  209 (211)
Q Consensus       172 vKVLG~GeLs~k--pVtVkA~~fSksAkEKIEaAGG~V~l  209 (211)
                      -|||++|.|. .  +++|-|-.||++|+++|++|||+|..
T Consensus        91 GkVtdd~rl~-~vPkvtVaALrfS~tAr~rI~kAGGe~lT  129 (198)
T PTZ00195         91 GDVLDDVRMA-RIPAMRVCALRFSKSARQSIVAAGGECLT  129 (198)
T ss_pred             eeEcCCcccc-ccCceEEEEEecCHHHHHHHHHhCCEEEe
Confidence            4999999998 7  99999999999999999999999975

>KOG1714|consensus

Probab=84.62  E-value=0.6  Score=40.48  Aligned_cols=29  Identities=31%  Similarity=0.430  Sum_probs=25.8

Q ss_pred             cCCCCceEEEEecccHHHHHHHHHcCCEEEE
Q psy9422         179 RIPKQPVIVKAKFFSKLAEEKIKAVGGACVL  209 (211)
Q Consensus       179 eLs~kpVtVkA~~fSksAkEKIEaAGG~V~l  209 (211)
                      +++  ++.|.|-.||+.|.++|++|||+|..
T Consensus        94 ~vP--kl~v~al~~t~~ar~rI~kagg~i~T  122 (188)
T KOG1714|consen   94 EVP--KLKVAALRFTKGARARILKAGGEILT  122 (188)
T ss_pred             ecc--cceeeeeecccchhhhhhccCceEEe
Confidence            444  78999999999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
2zkr_l	148	Structure Of A Mammalian Ribosomal 60s Subunit With		2e-15
4a17_K	149	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-13
3o58_Y	149	Yeast 80s Ribosome. This Entry Consists Of The 60s		1e-10
3izs_O	149	Localization Of The Large Subunit Ribosomal Protein		1e-10
1s1i_V	148	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		1e-10
3jyw_V	142	Structure Of The 60s Proteins For Eukaryotic Riboso		3e-10
3izr_O	144	Localization Of The Large Subunit Ribosomal Protein		2e-08
3zf7_b	145	High-resolution Cryo-electron Microscopy Structure		2e-05
3j21_L	147	Promiscuous Behavior Of Proteins In Archaeal Riboso		2e-05

>pdb|2ZKR|LL Chain l, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 148

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 45/49 (91%), Gaps = 2/49 (4%)
Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++D+  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK+VGGACVL A
Sbjct: 100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148

>pdb|4A17|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 149

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 43/49 (87%), Gaps = 2/49 (4%)
Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++D+  AG++KVLGKGR+P QPV+VKAK+FSK AE +I AVGGACVLTA
Sbjct: 101 VIDVTKAGFFKVLGKGRLPNQPVVVKAKYFSKTAERRIVAVGGACVLTA 149

>pdb|3O58|Y Chain Y, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The First 80s In The Asymmetric Unit. Length = 149

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Query: 162 TSLLVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           T+ ++D   AGY K+LGKGRIP  PVIVKA+F SKLAEEKI+A GG   L A
Sbjct: 98  TAPVIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEEKIRAAGGVVELIA 149

>pdb|3IZS|O Chain O, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 149

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Query: 162 TSLLVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           T+ ++D   AGY K+LGKGRIP  PVIVKA+F SKLAEEKI+A GG   L A
Sbjct: 98  TAPVIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEEKIRAAGGVVELIA 149

>pdb|1S1I|V Chain V, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 148

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Query: 162 TSLLVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           T+ ++D   AGY K+LGKGRIP  PVIVKA+F SKLAEEKI+A GG   L A
Sbjct: 97  TAPVIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEEKIRAAGGVVELIA 148

>pdb|3JYW|V Chain V, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 142

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 2/50 (4%)
Query: 162 TSLLVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVL 209
           T+ ++D   AGY K+LGKGRIP  PVIVKA+F SKLAEEKI+A GG   L
Sbjct: 92  TAPVIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEEKIRAAGGVVEL 141

>pdb|3IZR|O Chain O, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 144

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 40/50 (80%), Gaps = 3/50 (6%)
Query: 165 LVDIA--GYYKVLGKGRIP-KQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           ++D+   GY KVLGKG +P ++P++VKAK  SK+AE+KIKA GGA +LTA
Sbjct: 95  VIDVTQFGYTKVLGKGMLPPERPIVVKAKLISKVAEKKIKAAGGAVLLTA 144

>pdb|3ZF7|BB Chain b, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 145

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 159 LALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           L +  LL +  GY K+LG G + + P IVKA++ SKLA++KI+  GGA VL A
Sbjct: 96  LPVIDLLAN--GYSKLLGNGHL-QAPCIVKARWVSKLADKKIRKAGGAVVLQA 145

>pdb|3J21|L Chain L, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 147

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 10/67 (14%)
Query: 144 MNMGIVRSATGRQVLLALTSLLVDIAGYY-KVLGKGRIPKQPVIVKAKFFSKLAEEKIKA 202
           M MGI     G+        ++VD+  +  KVLG G++ + P+++KA+ FS  AEEKIKA
Sbjct: 89  MQMGIAYEEGGK--------IIVDVTQFADKVLGTGKLTR-PLVIKARAFSPKAEEKIKA 139
Query: 203 VGGACVL 209
            GG  VL
Sbjct: 140 AGGEAVL 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
2zkr_l	148	60S ribosomal protein L27A; protein-RNA complex, 6	9e-19
3iz5_O	144	60S ribosomal protein L27A (L15P); eukaryotic ribo	3e-17
4a17_K	149	L29, RPL27A, 60S ribosomal protein L27A; eukaryoti	3e-17
3o58_Y	149	60S ribosomal protein L28; ribosomal RNA and prote	4e-17
1vq8_L	165	50S ribosomal protein L15P; ribosome 50S, protein-	8e-12
2zjr_I	156	50S ribosomal protein L15; ribosome, large ribosom	1e-05
3bbo_N	257	Ribosomal protein L15; large ribosomal subunit, sp	2e-05
3v2d_P	150	50S ribosomal protein L15; ribosome associated inh	5e-05
3r8s_L	143	50S ribosomal protein L15; protein biosynthesis, R	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 148

 Score = 78.3 bits (192), Expect = 9e-19
 Identities = 45/115 (39%), Positives = 59/115 (51%)

Query: 97  RSLFKGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQ 156
            +    HH+ N  + H   F  V   +  + R           +   +     R    + 
Sbjct: 34  NAGGMHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKN 93

Query: 157 VLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
                  + V  +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK+VGGACVL A
Sbjct: 94  KTGVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148

>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K Length = 149

 Score = 74.4 bits (182), Expect = 3e-17
 Identities = 33/43 (76%), Positives = 39/43 (90%)

Query: 169 AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           AG++KVLGKGR+P QPV+VKAK+FSK AE +I AVGGACVLTA
Sbjct: 107 AGFFKVLGKGRLPNQPVVVKAKYFSKTAERRIVAVGGACVLTA 149

>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 1s1i_V 3jyw_V Length = 149

 Score = 74.0 bits (181), Expect = 4e-17
 Identities = 31/43 (72%), Positives = 34/43 (79%)

Query: 169 AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           AGY K+LGKGRIP  PVIVKA+F SKLAEEKI+A GG   L A
Sbjct: 107 AGYGKILGKGRIPNVPVIVKARFVSKLAEEKIRAAGGVVELIA 149

>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ... Length = 165

 Score = 60.2 bits (146), Expect = 8e-12
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 157 VLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT 210
           V +       D A Y KVLG G++ +  + + A  FS+ A EK++  GG+  LT
Sbjct: 92  VDVRDVVEEADDADYVKVLGAGQV-RHELTLIADDFSEGAREKVEGAGGSVELT 144

>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M Length = 156

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 173 KVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           K+L  G I  + V V     S  A + ++A GG  VL  
Sbjct: 107 KLLASGEI-SRAVTVHVDAASAAAIKAVEAAGGRVVLPE 144

>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 257

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 173 KVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
           K+L  G +  + + +KA  FS  A+EK++  G + ++  
Sbjct: 184 KILADGEL-SKKLTIKAGAFSTSAKEKLEYAGCSLIVLP 221

>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ... Length = 150

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 173 KVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVL 209
           K+LG+G    +P+ V A  FSK A EK+KA GG  VL
Sbjct: 113 KILGEGEA--KPLKVVAHAFSKSALEKLKAAGGEPVL 147

>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L 2i2v_L ... Length = 143

 Score = 40.9 bits (97), Expect = 5e-05
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 173 KVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGAC 207
           KV+  G +   PV V+    +K A   I+A GG  
Sbjct: 108 KVILAGEV-TTPVTVRGLRVTKGARAAIEAAGGKI 141

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 41/248 (16%), Positives = 70/248 (28%), Gaps = 84/248 (33%)

Query: 9   KSLLLLICFESWQQEHVK-----------------FKTE-VGPG--TPNFKDRR-VLIQG 47
            +L L     S Q+E V+                  KTE   P   T  + ++R  L   
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 48  TQNFKVHQNRTRQEHV-KLCERLKSTPPGPADRKLWIS---MTANGKYFHVGKRSLFKGH 103
            Q F  + N +R +   KL + L    P        +    +   G     GK  +    
Sbjct: 123 NQVFAKY-NVSRLQPYLKLRQALLELRPAK-----NVLIDGVL--G----SGKTWV---- 166

Query: 104 HQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTS 163
                           L+     V  S + +   + ++  +N+    S     VL  L  
Sbjct: 167 ---------------ALD-----VCLSYKVQCKMDFKIFWLNLKNCNSP--ETVLEMLQK 204

Query: 164 LLVDIAGYYKVLGKG--RIPKQPVIVKAKFFSKLAEEK----------------IKAVGG 205
           LL  I   +         I  +   ++A+    L  +                   A   
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 206 AC---VLT 210
           +C   + T
Sbjct: 265 SCKILLTT 272

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
3o58_Y	149	60S ribosomal protein L28; ribosomal RNA and prote	100.0
3j21_L	147	50S ribosomal protein L15P; archaea, archaeal, KIN	100.0
3iz5_O	144	60S ribosomal protein L27A (L15P); eukaryotic ribo	100.0
4a17_K	149	L29, RPL27A, 60S ribosomal protein L27A; eukaryoti	100.0
2zkr_l	148	60S ribosomal protein L27A; protein-RNA complex, 6	100.0
1vq8_L	165	50S ribosomal protein L15P; ribosome 50S, protein-	99.97
3r8s_L	143	50S ribosomal protein L15; protein biosynthesis, R	99.93
3v2d_P	150	50S ribosomal protein L15; ribosome associated inh	99.92
2zjr_I	156	50S ribosomal protein L15; ribosome, large ribosom	99.91
3bbo_N	257	Ribosomal protein L15; large ribosomal subunit, sp	99.89
3j21_P	120	50S ribosomal protein L18E; archaea, archaeal, KIN	99.7
1vq8_O	116	50S ribosomal protein L18E; ribosome 50S, protein-	99.61
2zkr_o	188	60S ribosomal protein L18; protein-RNA complex, 60	99.51
3jyw_O	121	60S ribosomal protein L18(A); eukaryotic ribosome,	99.44
3iz5_R	188	60S ribosomal protein L18 (L18E); eukaryotic ribos	99.29
3izc_R	186	60S ribosomal protein RPL18 (L18E); eukaryotic rib	99.27
4a17_N	181	RPL18, 60S ribosomal protein L5; eukaryotic riboso	99.25

>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V

Probab=100.00  E-value=2.6e-41  Score=277.35  Aligned_cols=137  Identities=34%  Similarity=0.458  Sum_probs=115.8

Q ss_pred             eeeccccccchhhcc-ccccCCCCCCCCCCc-------eEEEeecCcceecCccccCCCCCCCC-CCCCCCceEEeEEec
Q psy9422          52 KVHQNRTRQEHVKLC-ERLKSTPPGPADRKL-------WISMTANGKYFHVGKRSLFKGHHQFN-IHQRHLTAFSIVLNM  122 (211)
Q Consensus        52 ~~~~~r~~rghvs~~-gri~k~r~~~~~rg~-------~~~~~~~g~~fe~Gq~~l~~PKrGF~-n~~~~~k~y~pvINL  122 (211)
                      +++||||+||||||| |+|++||+||||||+       ||||++|.        |.||||+||+ +|...++.|+|+|||
T Consensus         4 r~kKtrK~RG~~s~G~G~~gkhR~h~GGrG~AGg~~Hh~~~~~Ky~--------p~~fGK~G~r~~h~~~n~~~~~~INl   75 (149)
T 3o58_Y            4 RFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGEHHHRINMDKYH--------PGYFGKVGMRYFHKQQAHFWKPVLNL   75 (149)
T ss_dssp             SSGGGSSSSSCSSSBTTBSCCSSCSSSSSSSCCCSSSSCCCSCCCT--------TSSSSCCSCCCCCCCCCCCCCCSTTT
T ss_pred             cccccccccCCCccCCCCCCCCCCCCCCCccccCccceeEEEeeeC--------CCccCCCCcccCcccccccccceEEH
Confidence            579999999999999 999999999999996       99998754        4566666666 454456788989999


Q ss_pred             hhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCCceEEEEecccHHHHHHHHH
Q psy9422         123 NMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKA  202 (211)
Q Consensus       123 ~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEa  202 (211)
                      |+||++++++..++         ++. .++++.+|     |||+.+.||+||||+|+|+++||+|+|.+||++|+||||+
T Consensus        76 dkL~~lv~~~~~~~---------~a~-~~~~~~~~-----vID~~~~g~vKVLG~G~l~~~~v~Vka~~fS~~A~ekIe~  140 (149)
T 3o58_Y           76 DKLWTLIPEDKRDQ---------YLK-SASKETAP-----VIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEEKIRA  140 (149)
T ss_dssp             THHHHCSSCCSCSS---------CTT-SSTTSSCC-----BCCCSSSCSCCCCCCCCCCSCCEEECSSCCTTTTHHHHGG
T ss_pred             HHHHHHhHHHHhhh---------hhh-hccCCCCc-----EEEEecccceEEEcCCccCCCCEEEEEeecCHHHHHHHHH
Confidence            99999998876554         430 11246677     9999999999999999993389999999999999999999


Q ss_pred             cCCEEEEcC
Q psy9422         203 VGGACVLTA  211 (211)
Q Consensus       203 AGG~V~lia  211 (211)
                      |||+|+++|
T Consensus       141 aGG~~~~~~  149 (149)
T 3o58_Y          141 AGGVVELIA  149 (149)
T ss_dssp             GSCEEECCC
T ss_pred             cCCEEEEcC
Confidence            999999986

>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.2e-39  Score=266.53  Aligned_cols=131  Identities=26%  Similarity=0.345  Sum_probs=115.7

Q ss_pred             eeeccccccchhhcc-ccccCCCC--CCCCCCc----------eEEEeecCcceecCccccCCCCCCCCCCCCCCceEEe
Q psy9422          52 KVHQNRTRQEHVKLC-ERLKSTPP--GPADRKL----------WISMTANGKYFHVGKRSLFKGHHQFNIHQRHLTAFSI  118 (211)
Q Consensus        52 ~~~~~r~~rghvs~~-gri~k~r~--~~~~rg~----------~~~~~~~g~~fe~Gq~~l~~PKrGF~n~~~~~k~y~p  118 (211)
                      +++||||.||||||| |+|++||+  ||||||+          ||||++|.        |.++||+||+|+..++.+|. 
T Consensus         4 r~~k~rk~rG~~s~g~G~~~khR~~G~~GGrG~aG~g~~~~H~~~~~~ky~--------p~~~pK~GF~n~~~~~~~~~-   74 (147)
T 3j21_L            4 RRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYA--------PDHLGKRGFSRPPEVQREVR-   74 (147)
T ss_dssp             HHHHHTTTTCCSSTTSCSTTTSCSHHHHTSSTTTTSSCSSSSSSSCSSSSC--------SCCSCCCSCCCCTTTCCCCC-
T ss_pred             cccccccccCCCccCCCCCCCcCCCCCCCCCcccCCCccCcccEEEEeecC--------CCcCCcCCCCccccccceeE-
Confidence            578999999999999 99999999  9999974          99999876        67899999998754457888 


Q ss_pred             EEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCCceEEEEecccHHHHH
Q psy9422         119 VLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEE  198 (211)
Q Consensus       119 vINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkE  198 (211)
                      +|||++||+++++         |.+.|++   +.+++.+     +||+.++| +||||+|+|+ +||+|+|++||++|+|
T Consensus        75 ~VNL~~L~~l~~~---------L~~~gli---~~~~~~~-----vid~~~~G-vKVLG~G~l~-~~v~Vka~~fS~~A~e  135 (147)
T 3j21_L           75 VVNLKFIDEHLDE---------LMQMGIA---YEEGGKI-----IVDVTQFA-DKVLGTGKLT-RPLVIKARAFSPKAEE  135 (147)
T ss_dssp             EEEHHHHHHTTTT---------TTTSCCC---SSSSBSE-----EEEGGGGC-CEEECCSCCS-SCEEEEESEECHHHHH
T ss_pred             EEEHHHHHHHHHH---------HHHcCcc---cccCCcc-----eecccccC-cEEecCCccC-cCEEEEEEecCHHHHH
Confidence            8999999999753         6677886   3445566     99999999 9999999999 8999999999999999


Q ss_pred             HHHHcCCEEEEc
Q psy9422         199 KIKAVGGACVLT  210 (211)
Q Consensus       199 KIEaAGG~V~li  210 (211)
                      |||+|||+|+++
T Consensus       136 kIeaaGG~v~~~  147 (147)
T 3j21_L          136 KIKAAGGEAVLV  147 (147)
T ss_dssp             HHHHTTCEEEEC
T ss_pred             HHHHcCCEEEeC
Confidence            999999999975

>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K

Probab=100.00  E-value=3e-39  Score=264.76  Aligned_cols=135  Identities=34%  Similarity=0.462  Sum_probs=113.9

Q ss_pred             eeeccccccchhhcc-ccccCCCC--CCCCCCc-------eEEEeecCcceecCccccCCCCCCCCCCC-CCCceEEeEE
Q psy9422          52 KVHQNRTRQEHVKLC-ERLKSTPP--GPADRKL-------WISMTANGKYFHVGKRSLFKGHHQFNIHQ-RHLTAFSIVL  120 (211)
Q Consensus        52 ~~~~~r~~rghvs~~-gri~k~r~--~~~~rg~-------~~~~~~~g~~fe~Gq~~l~~PKrGF~n~~-~~~k~y~pvI  120 (211)
                      +++||||.||||||| |+|+|||+  ||||||.       |+||+++.        |.++||+||+++. ..++.|+|+|
T Consensus         4 r~~K~rk~RG~~s~G~G~~gkhR~~Gh~GGrG~AGg~~Hhr~~~~ky~--------p~~fGK~Gfr~~h~~~n~~~~~~V   75 (149)
T 4a17_K            4 HLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWH--------PGYYGKLGMRTFHLKKNPLHCPVV   75 (149)
T ss_dssp             GGSHHHHHTTSSSTTSCSSSCSCCHHHHTSSTTTTTTTTTHHHHHHHS--------TTCSSCCSCCCSSCCCGGGCCCEE
T ss_pred             cccccccccCCCccCCCCCCCcCCCCCCCCCcccCCCcceEEeeeccC--------CCcCCCCCccCCCccCCcceeeEE
Confidence            578999999999999 99999999  9999986       99998865        6789999998753 3346676799


Q ss_pred             echhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCCceEEEEecccHHHHHHH
Q psy9422         121 NMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKI  200 (211)
Q Consensus       121 NL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKI  200 (211)
                      |||+||++++++..++         ++   +.++..+     +||+.+.||+||||+|+|+++||+|+|++||++|+|||
T Consensus        76 NLdkL~~l~~~~~~~~---------~~---~~~~~~~-----vId~~~~g~~KvLG~G~l~~~~v~v~a~~fS~~A~~kI  138 (149)
T 4a17_K           76 NIDKLWSLVSDATRQK---------YA---EDKKKVP-----VIDVTKAGFFKVLGKGRLPNQPVVVKAKYFSKTAERRI  138 (149)
T ss_dssp             EGGGHHHHSCHHHHHH---------HH---HCCSSCC-----EEEHHHHTCCEEECCSCCCSSCCEEEESEECHHHHHHH
T ss_pred             EHHHHHHHhhhhcchh---------hh---hhcCCce-----EEEeccCCeEEEecCCccCCCCEEEEEeecCHHHHHHH
Confidence            9999999998865443         21   1223334     99999999999999999932899999999999999999


Q ss_pred             HHcCCEEEEcC
Q psy9422         201 KAVGGACVLTA  211 (211)
Q Consensus       201 EaAGG~V~lia  211 (211)
                      |+|||+|+++|
T Consensus       139 e~aGG~~~~~~  149 (149)
T 4a17_K          139 VAVGGACVLTA  149 (149)
T ss_dssp             HHTTCEEEECC
T ss_pred             HHcCCEEEEeC
Confidence            99999999986

>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=1.3e-37  Score=253.59  Aligned_cols=135  Identities=36%  Similarity=0.514  Sum_probs=95.2

Q ss_pred             eeeccccccchhhcc-ccccCCCCCCCCCCc-------eEEEeecCcceecCccccCCCCCCCCCCCCCC-ceEEeEEec
Q psy9422          52 KVHQNRTRQEHVKLC-ERLKSTPPGPADRKL-------WISMTANGKYFHVGKRSLFKGHHQFNIHQRHL-TAFSIVLNM  122 (211)
Q Consensus        52 ~~~~~r~~rghvs~~-gri~k~r~~~~~rg~-------~~~~~~~g~~fe~Gq~~l~~PKrGF~n~~~~~-k~y~pvINL  122 (211)
                      +.+|||+.|||+||| |++++||+||||||.       |+||+++.        |.|+||+||+|++... .+||++|||
T Consensus         4 r~~k~rk~RG~~t~G~G~~gq~r~~~Gg~G~aGgq~h~~~~~~k~~--------p~~lpK~GF~~~~~~~~~~~~~~VNl   75 (148)
T 2zkr_l            4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYH--------PGYFGKVGMKHYHLKRNQSFCPTVNL   75 (148)
T ss_dssp             --CHHHHTTTTSCSSCCSCSCC--CCSCSSSTTTTTTTCSSCTTTC--------------------------CCCCEEET
T ss_pred             ccCCcccCCCCcCcCCCCCCCCCCCCCCCCcccCCCCCEEeccccC--------CCcCCCCCcCCCCccccceecceEEH
Confidence            568999999999999 999999999999985       88888765        5689999999875432 266448999


Q ss_pred             hhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCC-ceEEEEecccHHHHHHHH
Q psy9422         123 NMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQ-PVIVKAKFFSKLAEEKIK  201 (211)
Q Consensus       123 ~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~k-pVtVkA~~fSksAkEKIE  201 (211)
                      ++||++++++..++         +.   ...    +.++++||....+|+||||+|+|+ + ||+|+|++||++|+||||
T Consensus        76 ~~L~~l~~~~~~~~---------~~---~~l----~~~~~vI~~~~~~~vKVLG~Gel~-k~~l~Vka~~fSk~A~ekIe  138 (148)
T 2zkr_l           76 DKPWTLVSEQTRVN---------AA---KNK----TGVAPIIDVVRSGYYKVLGKGKLP-KQPVIVKAKFFSRRAEEKIK  138 (148)
T ss_dssp             HHHHHHTTTTTSSC---------TT---TTE----EEHHHHSTTCSSSCCEEECCSCCC-SSCCEEEESEECHHHHHHHH
T ss_pred             HHHHhhhhcCcEEe---------hh---hhc----cccCCeEeccccCceEEecCCccc-cCCEEEEEEecCHHHHHHHH
Confidence            99999987765554         21   000    023458888778999999999999 7 999999999999999999


Q ss_pred             HcCCEEEEcC
Q psy9422         202 AVGGACVLTA  211 (211)
Q Consensus       202 aAGG~V~lia  211 (211)
                      +|||+|+++|
T Consensus       139 aAGG~v~~~~  148 (148)
T 2zkr_l          139 SVGGACVLVA  148 (148)
T ss_dssp             HTTCEEEEC-
T ss_pred             HcCCEEEecC
Confidence            9999999986

>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...

Probab=99.97  E-value=7.8e-32  Score=223.63  Aligned_cols=134  Identities=17%  Similarity=0.149  Sum_probs=100.7

Q ss_pred             eeccccccchhhcc-ccccCCCC--CCCCCCceEEEeecCcceecCccccC-CCCCCCCCCCCCCceEEeEEechhhhhh
Q psy9422          53 VHQNRTRQEHVKLC-ERLKSTPP--GPADRKLWISMTANGKYFHVGKRSLF-KGHHQFNIHQRHLTAFSIVLNMNMGIVR  128 (211)
Q Consensus        53 ~~~~r~~rghvs~~-gri~k~r~--~~~~rg~~~~~~~~g~~fe~Gq~~l~-~PKrGF~n~~~~~k~y~pvINL~kL~~l  128 (211)
                      ++|+||+|||+++| |++||||+  |+|+|+.      .|+.-+.++ |++ +||+||+|++..+.+|. +|||++||++
T Consensus         2 ~~k~~k~R~gRg~GsG~~GKt~grGhkGqk~r------aGg~~~~~~-pl~klPK~GF~~~~~~r~~~~-~VNL~~L~~l   73 (165)
T 1vq8_L            2 TSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGD------AGRDKHEFH-NHEPLGKSGFKRPQKVQEEAA-TIDVREIDEN   73 (165)
T ss_dssp             CCHHHHCTTCSSTTCSSTTSSCSGGGGTSSTT------TTTTTTTCT-TSCCSCCCCCCCCGGGCCCEE-EEEHHHHHHT
T ss_pred             CccccCcCCccCCCCCCCCCCCCCCCCCcccc------cCCCcCCCc-eeeECCCCCCccCCcccceee-eEEHHHHHHH
Confidence            57899999999999 99999999  9998875      222222222 544 89999999754456788 8999999999


Q ss_pred             hcccceechhhHHhhCccceeecc------chhhHHHhccceeeecccceEEeccccCCCCceEEEEecccHHHHHHHHH
Q psy9422         129 RSEERRVGEEGRLLNMNMGIVRSA------TGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKA  202 (211)
Q Consensus       129 i~~~~~v~~~~~L~~~Gl~~~~~k------~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEa  202 (211)
                      +++....         |.+   +.      .+...|+++|+|.    +|+||||+|+|+ +||+|+|++||++|+||||+
T Consensus        74 ~~~~~~~---------g~~---~~~~~~~vId~~~L~~~gli~----~~vKVLG~G~l~-k~l~Vka~~fSk~A~ekIea  136 (165)
T 1vq8_L           74 VTLLAAD---------DVA---EVEDGGFRVDVRDVVEEADDA----DYVKVLGAGQVR-HELTLIADDFSEGAREKVEG  136 (165)
T ss_dssp             TGGGTTS---------CCC---C-----CEEEGGGTCTTCTTS----SEEEEECCSCCC-SCCEEEESEECHHHHHHHHH
T ss_pred             HHHhhhc---------ccc---ccCCCCeEECHHHHHHCCccC----CceEEecCCccC-CCEEEEEEecCHHHHHHHHH
Confidence            7543222         121   00      1222233444441    789999999999 89999999999999999999


Q ss_pred             cCCEEEEcC
Q psy9422         203 VGGACVLTA  211 (211)
Q Consensus       203 AGG~V~lia  211 (211)
                      |||+|++++
T Consensus       137 AGG~v~~i~  145 (165)
T 1vq8_L          137 AGGSVELTD  145 (165)
T ss_dssp             TTCEEEECT
T ss_pred             cCCEEEEee
Confidence            999999875

>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...

Probab=99.93  E-value=3.8e-26  Score=186.13  Aligned_cols=96  Identities=21%  Similarity=0.242  Sum_probs=80.8

Q ss_pred             eecCcceecCccccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccc
Q psy9422          86 TANGKYFHVGKRSLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTS  163 (211)
Q Consensus        86 ~~~g~~fe~Gq~~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gv  163 (211)
                      .++|  ||+||||||  +||+||+|++  +++|. +|||++|+++. . ..++ +++|.+.|++   ..           
T Consensus        45 ~~~g--FEGGQ~Pl~rRlPK~GF~~~~--~~~y~-~VNL~~L~~~~-~-~~I~-~~~L~~~glv---~~-----------  102 (143)
T 3r8s_L           45 VRRG--FEGGQMPLYRRLPKFGFTSRK--AAITA-EIRLSDLAKVE-G-GVVD-LNTLKAANII---GI-----------  102 (143)
T ss_dssp             CCTT--CCTTSCCHHHHSCCCCCCCST--GGGEE-ECCSSSSSCSS-S-SEEE-HHHHGGGTSS---CT-----------
T ss_pred             CCCc--cccCCCccEEEccccccCCcc--cceeE-EEEHHHhhhcc-C-Ceec-HHHHHHcCcc---cc-----------
Confidence            4445  999999999  8999999974  58999 79999999874 2 4565 7888888886   11           


Q ss_pred             eeeecccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEE
Q psy9422         164 LLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACV  208 (211)
Q Consensus       164 Idl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~  208 (211)
                         . ..+|||||+|+|+ ++|+|+|++||++|+|+||+|||+|+
T Consensus       103 ---~-~~~VKVLg~Gel~-~~l~V~a~~~SksA~ekIEaAGG~v~  142 (143)
T 3r8s_L          103 ---Q-IEFAKVILAGEVT-TPVTVRGLRVTKGARAAIEAAGGKIE  142 (143)
T ss_dssp             ---T-CCEEECCCCSCCC-SCCEEESSCCCHHHHHHHHTTTCEEE
T ss_pred             ---C-CCceEEeeCCccc-ccEEEEEEecCHHHHHHHHHcCCEEe
Confidence               1 1249999999999 99999999999999999999999997

>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...

Probab=99.92  E-value=8.7e-26  Score=185.42  Aligned_cols=93  Identities=26%  Similarity=0.253  Sum_probs=80.3

Q ss_pred             ceecCccccC--CCCCCCCC-----CCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccc
Q psy9422          91 YFHVGKRSLF--KGHHQFNI-----HQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTS  163 (211)
Q Consensus        91 ~fe~Gq~~l~--~PKrGF~n-----~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gv  163 (211)
                      .||+||||||  +||+||+|     +  ++++|. +|||++|+. ++ + .++ +++|.+.|++   ..           
T Consensus        50 gFEGGQ~Pl~rRlPK~GF~~~~~~~~--~~~~y~-~VNL~~L~~-~~-G-~I~-~~~L~~~glv---~~-----------  108 (150)
T 3v2d_P           50 RFEGGRSTTLMRLPKRGMQGQVPGEI--KRPRYQ-GVNLKDLAR-FE-G-EVT-PELLVRAGLL---KK-----------  108 (150)
T ss_dssp             TCCTTSCCTTTTSCCCSCCCCTTCCC--CCCCEE-EEEHHHHTT-CC-S-EEC-HHHHHTTTSS---CT-----------
T ss_pred             cccCCCCccEEEcCccCccCcccccc--ccceEE-EEEHHHHhh-cC-C-ccc-HHHHHHCCCc---cc-----------
Confidence            4999999999  79999999     5  468999 799999998 66 5 676 8888888886   11           


Q ss_pred             eeeecccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEcC
Q psy9422         164 LLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA  211 (211)
Q Consensus       164 Idl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~lia  211 (211)
                          .. +|||||+|+|+  +|+|+|++||++|+|+||+|||+|++++
T Consensus       109 ----~~-~VKvLg~G~l~--~v~V~a~~~S~~A~~kIe~aGG~v~~~~  149 (150)
T 3v2d_P          109 ----GY-RLKILGEGEAK--PLKVVAHAFSKSALEKLKAAGGEPVLLE  149 (150)
T ss_dssp             ----TC-EEEEECSSCCC--SCEECBSCBCHHHHHHHHHTTCBCCBCC
T ss_pred             ----cc-ceEEEecCCcc--cEEEEEEEcCHHHHHHHHHcCCEEEEec
Confidence                11 49999999998  9999999999999999999999998763

>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M

Probab=99.91  E-value=3.6e-26  Score=188.24  Aligned_cols=96  Identities=22%  Similarity=0.273  Sum_probs=79.6

Q ss_pred             cceecCccccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeee
Q psy9422          90 KYFHVGKRSLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVD  167 (211)
Q Consensus        90 ~~fe~Gq~~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~  167 (211)
                      ..||+||||+|  +||+||+| +  +.+|. +|||++||++++.+  ++ +++|.+.++                 |+..
T Consensus        47 ~gfEGGQ~Pl~rrlPK~GF~n-~--~~~~~-~VNL~~L~~l~~~~--i~-~~~L~~~gl-----------------i~~~  102 (156)
T 2zjr_I           47 AFFEGGRSRLIARLPKRGFNN-V--GTTYE-VVKLSQLQDLEDTT--FD-RDTLEAYRL-----------------VRRK  102 (156)
T ss_dssp             CSCSCCSSSSTTTSCCCCCCC-C--CCCCC-EECHHHHTTSCCCC--CC-TTTTHHHHH-----------------CCCC
T ss_pred             CceEcCcCCCeEecCCCCCcC-C--ceEEE-eechhHHHhhhcCC--cC-HHHHHhCCc-----------------Eecc
Confidence            35999999999  89999998 3  47888 79999999986654  54 455555554                 4433


Q ss_pred             cccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEcC
Q psy9422         168 IAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA  211 (211)
Q Consensus       168 ~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~lia  211 (211)
                       .+++||||+|+|+ +||+|+|++||++|+|+||+|||+|++++
T Consensus       103 -~~~vKVLG~G~l~-~~l~Vka~~fSk~A~ekIEaAGG~v~~i~  144 (156)
T 2zjr_I          103 -NRPVKLLASGEIS-RAVTVHVDAASAAAIKAVEAAGGRVVLPE  144 (156)
T ss_dssp             -SSCCEECCCCCCC-CCCCCCCSEECHHHHHHHGGGSCCCCCCC
T ss_pred             -ccceEEeeCCccC-cCeEEEEEecCHHHHHHHHHcCCEEEEee
Confidence             3569999999999 99999999999999999999999998764

>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.89  E-value=2.2e-25  Score=196.40  Aligned_cols=100  Identities=18%  Similarity=0.155  Sum_probs=82.8

Q ss_pred             ceecCccccC--CCC-CCCCCCCC-CCceEEeEEechhhhhh-hcccceechhhHHhhCccceeeccchhhHHHhcccee
Q psy9422          91 YFHVGKRSLF--KGH-HQFNIHQR-HLTAFSIVLNMNMGIVR-RSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLL  165 (211)
Q Consensus        91 ~fe~Gq~~l~--~PK-rGF~n~~~-~~k~y~pvINL~kL~~l-i~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvId  165 (211)
                      .|||||||||  +|| |||+|++. ++.+|. +|||++||++ ++++..++ ++.|.+.|++                 +
T Consensus       113 GFEGGQmPl~rRlPK~rGF~n~~~~~r~~y~-~VNL~kL~~lr~~eg~~Id-le~L~~aGlI-----------------~  173 (257)
T 3bbo_N          113 GFEGGQMPLYRRLPKLRGIAGGMHAGLPKYV-NVNLTDIENAGFQDGEEVS-LETLKAKRVI-----------------N  173 (257)
T ss_dssp             TCCSSCSSTTSCCCCCSSCCCCCSSCCSSSS-CSCSSCCSCSSTTTTTTTC-CSSCCSSSCS-----------------S
T ss_pred             ceecCCCcchhhcccccccCCccccCcceee-eEeHHHHhhcccCCCCEeC-HHHHHhCCcc-----------------c
Confidence            4999999998  899 99998643 356898 7999999986 77766665 5566666664                 3


Q ss_pred             ee---cccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422         166 VD---IAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT  210 (211)
Q Consensus       166 l~---~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~li  210 (211)
                      ..   ..+++||||+|+|+ ++|+|+|+.||++|+|+||+|||+|+++
T Consensus       174 ~~gr~~~~~VKVLG~GeLt-kkLtVkA~~fSksA~eKIEaAGG~v~~i  220 (257)
T 3bbo_N          174 PSGRERKLPLKILADGELS-KKLTIKAGAFSTSAKEKLEYAGCSLIVL  220 (257)
T ss_dssp             SSCCCCSCCCCCCCSSCCC-SSCCCCSSCCTGGGTTSSTTTTCCEECC
T ss_pred             ccccccCccEEEEeCCccC-CCeEEEEEecCHHHHHHHHHcCCEEEEe
Confidence            21   24569999999999 9999999999999999999999999875

>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.70  E-value=1.9e-18  Score=136.87  Aligned_cols=76  Identities=22%  Similarity=0.232  Sum_probs=63.6

Q ss_pred             ccccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceE
Q psy9422          96 KRSLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYK  173 (211)
Q Consensus        96 q~~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvK  173 (211)
                      .+|+|  +|||||++.    ++|. +|||++|+++++++..                             |+.    .+|
T Consensus        26 ~~Pl~rrlpKrgF~~r----~~~~-~VnL~~L~~~~~~g~~-----------------------------i~~----~vK   67 (120)
T 3j21_P           26 GVKIWKDVAWRLERPR----RQRA-EVNVSKINRYANDGEM-----------------------------IVV----PGS   67 (120)
T ss_dssp             CCSHHHHHHHHHHSCT----TSSE-EEEHHHHTTSSCTTCE-----------------------------EEE----EEE
T ss_pred             CCcHHHHHHhhcCCCC----Ccce-eEEHHHHHHHHhcCCE-----------------------------EEE----EEE
Confidence            36877  799999983    6798 7999999988654321                             121    289


Q ss_pred             EeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422         174 VLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT  210 (211)
Q Consensus       174 VLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~li  210 (211)
                      |||+|+++ ++++|+|++||++|+|+||+|||+|+++
T Consensus        68 VLg~G~l~-~kl~V~a~~fS~~A~ekIe~AGG~v~~~  103 (120)
T 3j21_P           68 VLGAGKLE-KKVIVAAWKFSETARRKIIEAGGEAITI  103 (120)
T ss_dssp             EECSSCCC-SCCEEEEEEECHHHHHHHTTTSSCEEES
T ss_pred             EcCCCeec-CCEEEEEeccCHHHHHHHHHcCCEEEEe
Confidence            99999999 8999999999999999999999999875

>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...

Probab=99.61  E-value=1.9e-16  Score=124.67  Aligned_cols=76  Identities=26%  Similarity=0.240  Sum_probs=62.0

Q ss_pred             CccccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccce
Q psy9422          95 GKRSLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYY  172 (211)
Q Consensus        95 Gq~~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~Gyv  172 (211)
                      -|||+|  +||||  ++  ++.+|. +|||++|+++++++..+                           +|      ++
T Consensus        22 ~~~Pl~rRlPKrG--~~--~~~~~~-~VnL~~L~~~~~~g~~i---------------------------lv------~v   63 (116)
T 1vq8_O           22 SGGAVWGDVAERL--EK--PRRTHA-EVNLGRIERYAQEDETV---------------------------VV------PG   63 (116)
T ss_dssp             SSCHHHHHHHHHH--TS--CTTTSE-EEEHHHHHHHCCTTSEE---------------------------EE------EE
T ss_pred             cCCCHhhhcccCC--CC--CCceee-eEeHHHHHHHccCCCEE---------------------------EE------EE
Confidence            378999  79999  33  247898 79999999876542110                           11      48


Q ss_pred             EEeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422         173 KVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT  210 (211)
Q Consensus       173 KVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~li  210 (211)
                      ||||+|+++ ++++|+|++||++|+|+||+| |+|+++
T Consensus        64 KVLg~G~l~-k~l~V~a~~fSk~A~ekIeaA-G~v~~~   99 (116)
T 1vq8_O           64 KVLGSGVLQ-KDVTVAAVDFSGTAETKIDQV-GEAVSL   99 (116)
T ss_dssp             EEECCSCCC-SCCEEEEEEECHHHHHHHHHH-SEEEEH
T ss_pred             EEeeCCeec-CCEEEEEEecCHHHHHHHHHc-CeEEEh
Confidence            999999999 899999999999999999999 999864

>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.51  E-value=1.8e-15  Score=128.09  Aligned_cols=77  Identities=19%  Similarity=0.092  Sum_probs=60.4

Q ss_pred             ccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcc-cceechhhHHhhCccceeeccchhhHHHhccceeeecccceEE
Q psy9422          98 SLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSE-ERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKV  174 (211)
Q Consensus        98 ~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~-~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKV  174 (211)
                      |++  +|||||+|.    .+|. +|||++|+++... +....         +                +++     .+||
T Consensus        42 pl~rrlpKRgF~sr----~~y~-~VNLs~L~~~~~~~g~~~~---------i----------------iv~-----~~KV   86 (188)
T 2zkr_o           42 TFNQVVLKRLFMSR----TNRP-PLSLSRMIRKMKLPGRENK---------T----------------AVV-----VGTV   86 (188)
T ss_dssp             HHHHHHHHHHHSCT----TTSC-EEEHHHHHSCSSSCCSTTS---------E----------------EEE-----EEEE
T ss_pred             CHHHHHHHhhCCCc----ccee-eeeHHHHHHHhhhcCCCCc---------E----------------EEe-----ecEE
Confidence            677  799999982    6898 7999999876411 00000         1                111     1699


Q ss_pred             eccccCCCC--ceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422         175 LGKGRIPKQ--PVIVKAKFFSKLAEEKIKAVGGACVLT  210 (211)
Q Consensus       175 LG~GeLs~k--pVtVkA~~fSksAkEKIEaAGG~V~li  210 (211)
                      ||+|+|+ +  +++|+|+.||++|+|+||+|||+|+++
T Consensus        87 Lg~GeL~-kvpkLtV~A~~fSksArekIEaAGG~v~~i  123 (188)
T 2zkr_o           87 TDDVRIL-EVPKLKVCALRVSSRARSRILKAGGKILTF  123 (188)
T ss_dssp             ECSSCCC-CCSSCCEEEEEECHHHHHHHHHHSSCEEEH
T ss_pred             ECCceec-ccCCeEEEEeecCHHHHHHHHHcCCEEEEh
Confidence            9999999 8  999999999999999999999999864

>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O

Probab=99.44  E-value=2.7e-15  Score=119.22  Aligned_cols=79  Identities=18%  Similarity=0.103  Sum_probs=60.3

Q ss_pred             ccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEe
Q psy9422          98 SLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVL  175 (211)
Q Consensus        98 ~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVL  175 (211)
                      |++  +|||||++.    .+|. +|||++|+++++.....+         -+               ++.     .+|||
T Consensus        23 pl~rrvpKRgF~sr----~~~~-~VnLs~L~~~~~~~g~~g---------~~---------------vvv-----~~KVl   68 (121)
T 3jyw_O           23 PFNKVVLKALFLSK----INRP-PVSVSRIARALKQEGAAN---------KT---------------VVV-----VGTVT   68 (121)
T ss_dssp             HHHHHHHHTTTSCS----TTSC-CBCHHHHHHHTTTTSCSS---------SE---------------EEE-----SSCBC
T ss_pred             hHHHHHHHHHCCCC----Cccc-eEEHHHHHHHhhccCCCC---------CE---------------EEE-----EEEEc
Confidence            566  799999984    5888 699999998765210000         00               111     26999


Q ss_pred             ccccCCCC-ceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422         176 GKGRIPKQ-PVIVKAKFFSKLAEEKIKAVGGACVLT  210 (211)
Q Consensus       176 G~GeLs~k-pVtVkA~~fSksAkEKIEaAGG~V~li  210 (211)
                      |+|+++.. +++|+|+.||++|+++||+|||+|+.+
T Consensus        69 g~G~l~~~~kl~V~a~~fS~~A~~kIe~AGG~~~~~  104 (121)
T 3jyw_O           69 DDARIFEFPKTTVAALRFTAGARAKIVKAGGECITL  104 (121)
T ss_dssp             CCSCCCSSSCCCEECSSBCTTTTTHHHHHTCCBCCS
T ss_pred             CCceEcccCCEEEEEEecCHHHHHHHHHcCCEEEEH
Confidence            99999733 899999999999999999999999764

>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N

Probab=99.25  E-value=5.7e-13  Score=112.29  Aligned_cols=78  Identities=18%  Similarity=0.135  Sum_probs=59.7

Q ss_pred             ccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEe
Q psy9422          98 SLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVL  175 (211)
Q Consensus        98 ~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVL  175 (211)
                      |++  ++||+|.+.    .+|. +|||++|++++.+.+..          -          .     +++     .+|||
T Consensus        44 pf~r~V~KRLf~sr----~nr~-pVnLsrI~r~~~~~e~g----------k----------~-----vVv-----~gKVL   88 (181)
T 4a17_N           44 KFNQNILKRLSSSR----LNKF-PLSLSRIVKNLNETNKE----------Q----------V-----IVS-----TSTVT   88 (181)
T ss_dssp             HHHHHHHHHHSCCG----GGSC-CEEHHHHHHSCCHHHHH----------S----------E-----EEE-----SSEEE
T ss_pred             hHHHHHHHHHcCCc----cccC-cccHHHHHHHhccccCC----------C----------E-----EEE-----EEEEc
Confidence            555  799999963    5787 69999999876531100          0          0     212     26999


Q ss_pred             ccccCCC-CceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422         176 GKGRIPK-QPVIVKAKFFSKLAEEKIKAVGGACVLT  210 (211)
Q Consensus       176 G~GeLs~-kpVtVkA~~fSksAkEKIEaAGG~V~li  210 (211)
                      |+|+|+. .+++|+|..||++|+++||+|||+|+++
T Consensus        89 g~G~l~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~~  124 (181)
T 4a17_N           89 NDERLLTVPKLTVCALKFTETARKRILAAGGKCLTF  124 (181)
T ss_dssp             CCTTCCSCCCCEEECSEECHHHHHHHHTTTCEEECH
T ss_pred             CCceEcccCCEEEEEeecCHHHHHHHHHcCCEEEEh
Confidence            9999963 3699999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d1vqol1	150	c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {A	1e-08
d1vqoo1	115	c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeo	2e-05
d2j01p1	146	c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {T	0.002

>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 1/116 (0%)

Query: 95  GKRSLFKGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATG 154
           G+    +  H+F+ H+    +               + R + E   LL  +        G
Sbjct: 29  GRGDAGRDKHEFHNHEPLGKSGFKRPQKVQEEAATIDVREIDENVTLLAADDVAEVEDGG 88

Query: 155 RQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT 210
            +V +       D A Y KVLG G++    + + A  FS+ A EK++  GG+  LT
Sbjct: 89  FRVDVRDVVEEADDADYVKVLGAGQVRH-ELTLIADDFSEGAREKVEGAGGSVELT 143

>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L18e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 19/37 (51%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 173 KVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVL 209
           KVLG G + K  V V A  FS  AE KI  VG A  L
Sbjct: 63  KVLGSGVLQK-DVTVAAVDFSGTAETKIDQVGEAVSL 98

>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Thermus thermophilus [TaxId: 274]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 168 IAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVL 209
           +   Y++   G    +P+ V A  FSK A EK+KA GG  VL
Sbjct: 102 LKKGYRLKILGEGEAKPLKVVAHAFSKSALEKLKAAGGEPVL 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d1vqol1	150	Ribosomal protein L15 (L15p) {Archaeon Haloarcula	99.9
d2zjri1	141	Ribosomal protein L15 (L15p) {Deinococcus radiodur	99.87
d2j01p1	146	Ribosomal protein L15 (L15p) {Thermus thermophilus	99.87
d2gycj1	140	Ribosomal protein L15 (L15p) {Escherichia coli [Ta	99.85
d1vqoo1	115	Ribosomal protein L18e {Archaeon Haloarcula marism	99.04

>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.90  E-value=1.3e-24  Score=172.82  Aligned_cols=139  Identities=19%  Similarity=0.143  Sum_probs=95.7

Q ss_pred             eccccccchhhcc-ccccCCCC--CCCCCCceEEEeecCcceecCccccCCCCCCCCCCCCCCceEEeEEechhhhhhhc
Q psy9422          54 HQNRTRQEHVKLC-ERLKSTPP--GPADRKLWISMTANGKYFHVGKRSLFKGHHQFNIHQRHLTAFSIVLNMNMGIVRRS  130 (211)
Q Consensus        54 ~~~r~~rghvs~~-gri~k~r~--~~~~rg~~~~~~~~g~~fe~Gq~~l~~PKrGF~n~~~~~k~y~pvINL~kL~~li~  130 (211)
                      .+++|+|+++.+| |+.++|++  |.|+++. .-+.+  ..|++ ++|  +||+||+++++.+.+|. +|||.+|+++++
T Consensus         2 skk~k~R~gRg~G~G~~~~~~GrG~KGqk~r-sG~~~--~~f~g-~~~--lpK~g~~~~~~~~~~~~-~inl~~L~~~~~   74 (150)
T d1vqol1           2 SKKKRQRGSRTHGGGSHKNRRGAGHRGGRGD-AGRDK--HEFHN-HEP--LGKSGFKRPQKVQEEAA-TIDVREIDENVT   74 (150)
T ss_dssp             CTGGGCTTCSSTTCSSTTSSSSGGGGTSSTT-TTTTT--TTCTT-SCC--SSCCCCCCCGGGCCCEE-EEEHHHHHHTTT
T ss_pred             CccccccCCcCcCCCCCCCCCCCCCCCCCCc-ccCcc--CCCcC-Ccc--CCccCccccccccceee-eccHHHHHHHHh
Confidence            3678999999999 99999866  5555542 11111  24554 444  79999998665678898 799999998876


Q ss_pred             ccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422         131 EERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT  210 (211)
Q Consensus       131 ~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~li  210 (211)
                      .....+ ...+.+. .       ....|.+.+ +.....+|+||||+|+|+ .|++|+|++||++|+|+||+|||+|+++
T Consensus        75 ~~~~~~-~~~~~~~-~-------~~~~l~~~~-~~~~~~~~vKlLG~G~l~-~~l~Ika~~~S~sA~ekIe~aGG~v~l~  143 (150)
T d1vqol1          75 LLAADD-VAEVEDG-G-------FRVDVRDVV-EEADDADYVKVLGAGQVR-HELTLIADDFSEGAREKVEGAGGSVELT  143 (150)
T ss_dssp             TCTTSC-CCC-------------CEEEGGGTC-TTCSSSSEEEEECCSCCC-SCCEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred             hhcccc-ccccccc-h-------hhHHHHhhc-cccccccceEEecCCccC-cCEEEEEEEcCHHHHHHHHHcCCEEEEe
Confidence            543332 0000000 0       000111222 222345789999999999 8999999999999999999999999986

>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.87  E-value=1.6e-23  Score=166.77  Aligned_cols=95  Identities=22%  Similarity=0.247  Sum_probs=76.4

Q ss_pred             cceecCccccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeee
Q psy9422          90 KYFHVGKRSLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVD  167 (211)
Q Consensus        90 ~~fe~Gq~~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~  167 (211)
                      ..||+|||||+  +||+||++.   +..|. +|||++|+.+.+.  .++ .+.|.+.+++                 ...
T Consensus        44 ~gfeGGQ~Pl~rrlPKrGf~~~---~~~~~-~inl~~l~~~~~~--~i~-~~~L~~~~li-----------------~~~   99 (141)
T d2zjri1          44 AFFEGGRSRLIARLPKRGFNNV---GTTYE-VVKLSQLQDLEDT--TFD-RDTLEAYRLV-----------------RRK   99 (141)
T ss_dssp             CSCSCCSSSSTTTSCCCCCCCC---CCCCC-EECHHHHTTSCCC--CCC-TTTTHHHHHC-----------------CCC
T ss_pred             CceecccccceecCCccCCCcc---cceEE-EEEhhhhhccccc--chh-hhhhhhhcee-----------------ccC
Confidence            34999999999  799999985   36888 7999999987543  233 4555555554                 322


Q ss_pred             cccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422         168 IAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT  210 (211)
Q Consensus       168 ~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~li  210 (211)
                      . ..|||||+|+|+ .+++|+|++||++|+++||+|||+|+++
T Consensus       100 ~-~~VKiLg~Gel~-~kl~I~v~~~S~sA~~~IE~aGG~V~l~  140 (141)
T d2zjri1         100 N-RPVKLLASGEIS-RAVTVHVDAASAAAIKAVEAAGGRVVLP  140 (141)
T ss_dssp             S-SCCEECCCCCCC-CCCCCCCSEECHHHHHHHGGGSCCCCCC
T ss_pred             C-CCeEEccCCccc-CCEEEEEEEeCHHHHHHHHHCCCEEEee
Confidence            2 239999999999 9999999999999999999999999875

>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=4.2e-23  Score=164.75  Aligned_cols=94  Identities=27%  Similarity=0.268  Sum_probs=75.2

Q ss_pred             ceecCccccC--CCCCCCCCCCC---CCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhcccee
Q psy9422          91 YFHVGKRSLF--KGHHQFNIHQR---HLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLL  165 (211)
Q Consensus        91 ~fe~Gq~~l~--~PKrGF~n~~~---~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvId  165 (211)
                      .||+||||||  +||+||+++..   ++.+|. +|||++|+++.++   ++ .+.|++.+++                 .
T Consensus        46 gFEGGQ~Pl~rrlPK~Gf~~~~~~~~~~~~~~-~inl~~l~~~~~~---~~-~~~l~~~gli-----------------k  103 (146)
T d2j01p1          46 RFEGGRSTTLMRLPKRGMQGQVPGEIKRPRYQ-GVNLKDLARFEGE---VT-PELLVRAGLL-----------------K  103 (146)
T ss_dssp             SCCSSSCTTCCSCCCCCSCCCSSCSCCCCCEE-EEETTTTTTSCSC---CC-TTTTTTSSSC-----------------S
T ss_pred             hhccCCCCceeccchhhhhcccccceeeEEee-hhhhhhhhhcccc---hh-hHHHHHhCcc-----------------c
Confidence            5999999999  79999998632   256788 7999999876432   33 4567777665                 1


Q ss_pred             eecccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422         166 VDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT  210 (211)
Q Consensus       166 l~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~li  210 (211)
                      ..  -+|||||+|+++  +++|+|++||++|+|+||+|||+|+++
T Consensus       104 ~~--~~vKvLg~Ge~k--~i~I~v~~~SksA~ekIEkaGG~v~il  144 (146)
T d2j01p1         104 KG--YRLKILGEGEAK--PLKVVAHAFSKSALEKLKAAGGEPVLL  144 (146)
T ss_dssp             SC--CEEEEECSSCCC--SSCCCCSBCCHHHHHHHHTSCCCCCCC
T ss_pred             cC--ceEEEecCCceE--eEEEEEEEeCHHHHHHHHHcCCEEEEe
Confidence            11  138999999974  899999999999999999999999886

>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.9e-24  Score=169.39  Aligned_cols=93  Identities=20%  Similarity=0.200  Sum_probs=75.4

Q ss_pred             ceecCccccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeec
Q psy9422          91 YFHVGKRSLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDI  168 (211)
Q Consensus        91 ~fe~Gq~~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~  168 (211)
                      .||+||||||  +||+||+++.  +..|+ +|||++|+.+.  +..++ ++.|.+.+++                 .. .
T Consensus        46 gfEGGQ~Pl~rr~PK~Gf~~~~--~~~~~-~i~l~~l~~~~--~~~i~-~~~L~~~gli-----------------~~-~  101 (140)
T d2gycj1          46 GFEGGQMPLYRRLPKFGFTSRK--AAITA-EIRLSDLAKVE--GGVVD-LNTLKAANII-----------------GI-Q  101 (140)
T ss_dssp             SCCSSCSSSSSSSSSCCCCCCC--CCCCC-CBCCSSSSSSS--SCSCC-STTSCTTTTC-----------------CC-S
T ss_pred             cccCCcccceeeCceeeccccc--cceee-eEEeeeehhcc--ccccc-HHHHhhcCee-----------------ec-c
Confidence            4999999999  7999999864  57888 69999998763  22343 5566666664                 22 1


Q ss_pred             ccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEE
Q psy9422         169 AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACV  208 (211)
Q Consensus       169 ~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~  208 (211)
                      ..++||||.|+|+ .||+|+|++||++|+|+||+|||+|+
T Consensus       102 ~~~vKiLg~Gel~-~ki~i~~~~~S~sA~~~IE~aGG~Ve  140 (140)
T d2gycj1         102 IEFAKVILAGEVT-TPVTVRGLRVTKGARAAIEAAGGKIE  140 (140)
T ss_dssp             SCCCBCCCSCCCC-CCCCCCCSCCCTTTSSSSSSSCCCCC
T ss_pred             ceeeEEeccCccc-CCEEEEEEEeCHHHHHHHHHcCCccC
Confidence            3459999999999 99999999999999999999999985

>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L18e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.04  E-value=7.8e-11  Score=91.07  Aligned_cols=37  Identities=49%  Similarity=0.524  Sum_probs=34.3

Q ss_pred             eEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEEE
Q psy9422         172 YKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVL  209 (211)
Q Consensus       172 vKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~l  209 (211)
                      .||||+|+++ ++++|.|..||++|+||||+|||.+.+
T Consensus        62 gKVLg~G~l~-~k~~V~A~~fS~sA~~kI~~aGg~iti   98 (115)
T d1vqoo1          62 GKVLGSGVLQ-KDVTVAAVDFSGTAETKIDQVGEAVSL   98 (115)
T ss_dssp             EEEECCSCCC-SCCEEEEEEECHHHHHHHHHHSEEEEH
T ss_pred             eEEecccEEc-CCEEEEEeecCHHHHHHHHHcCCEEEH
Confidence            5999999999 999999999999999999999986653