Psyllid ID: psy9444

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
MSVTHLRYIYVIISEGEESIPADESLVSKLPGVAVVSKLLTERRTFVLVRKAIDVKRALTILSAQWRAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESIEKKAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESIDRAGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPGRNDFNGEKRPVWYVFSGMGSQWAGMDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQDSDTFEHILNSFVSIAAVQFV
ccEEEEEEEcEEEEccEEEccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEEEEcccccHHHHHHHHHHHcccccccEEEEEEHHHcccccccEEEEEEccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHccEEccccccccccccccccccccEEEccccccccccccccccccEEEEEccccccHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
ccccHHEEEEEEEcccccccccHHHHHHccccccccccccccHcEEEccEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEccccHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHcccHccccHHHHHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHcccccccccHHHccccHHHHHHHHHHHHHHccccccEEccccHHHHEEEEccccccHHHHHHHHHHccccEHHccccccccccccccccEEEEEEEccccccEEEEccccccEEEEEccccccccHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MSVTHLRYIYVIISegeesipadeslvskLPGVAVVSKLLTERRTFVLVRKAIDVKRALTILSAQWRAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTlipilesepmlsvdltvhsnapenfNGLIESIEKKAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTlipilesepmlsvdltvhsnapenfnGLIESidragrpsiqcghftgrkEVACAYADGTLTAEQTILCAYWRGRSILecklapgrndfngekrpVWYVFSGmgsqwagmdfngekrpVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEAlrgenfdlipvitsedadTFEHILNSFVSIaavqdsdtfEHILNSFVSIAAVQFV
MSVTHLRYIYVIIsegeesipadESLVSKLPGVAVVSkllterrtfvlvrkaidvkRALTILSAQWRAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESIEKKAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESIDRAGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLapgrndfngeKRPVWYVFSGMGSQWAGMDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQDSDTFEHILNSFVSIAAVQFV
MSVTHLRYIYVIISEGEESIPADESLVSKLPGVAVVSKLLTERRTFVLVRKAIDVKRALTILSAQWRAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESIEKKAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESIDRAGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPGRNDFNGEKRPVWYVFSGMGSQWAGMDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQDSDTFEHILNSFVSIAAVQFV
***THLRYIYVIISEGEESIPADESLVSKLPGVAVVSKLLTERRTFVLVRKAIDVKRALTILSAQWRAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESIEKKAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESIDRAGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPGRNDFNGEKRPVWYVFSGMGSQWAGMDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQDSDTFEHILNSFVSIAAVQ**
MSVTHLRYIYVIISEGEESIPA********************RRTFVLVRKA**************RAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSN****************IDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESIDRAGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPGRNDFNGEKRPVWYVFSGMGSQWAGMDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQDSDTFEHILNSFVSIAAVQFV
MSVTHLRYIYVIISEGEESIPADESLVSKLPGVAVVSKLLTERRTFVLVRKAIDVKRALTILSAQWRAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESIEKKAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESIDRAGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPGRNDFNGEKRPVWYVFSGMGSQWAGMDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQDSDTFEHILNSFVSIAAVQFV
*SVTHLRYIYVIISEGEESIPADESLVSKLPGVAVVSKLLTERRTFVLVRKAIDVKRALTILSAQWRAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESIEKKAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESIDRAGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPGRNDFNGEKRPVWYVFSGMGSQWAGMDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQDSDTFEHILNSFVSIAAVQFV
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MSVTHLRYIYVIISEGEESIPADESLVSKLPGVAVVSKLLTERRTFVLVRKAIDVKRALTILSAQWRAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESIEKKAIDVKRALTILSQLVLENSAGALKLKIAEIASDKTAETAFANTLIPILESEPMLSVDLTVHSNAPENFNGLIESIDRAGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECKLAPGRNDFNGEKRPVWYVFSGMGSQWAGMDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSFVSIAAVQDSDTFEHILNSFVSIAAVQFV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query395 2.2.26 [Sep-21-2011]
P12276 2512 Fatty acid synthase OS=Ga yes N/A 0.154 0.024 0.408 4e-11
P12785 2505 Fatty acid synthase OS=Ra yes N/A 0.177 0.027 0.416 3e-10
P19096 2504 Fatty acid synthase OS=Mu yes N/A 0.174 0.027 0.402 7e-10
P49327 2511 Fatty acid synthase OS=Ho yes N/A 0.174 0.027 0.402 1e-09
Q71SP7 2513 Fatty acid synthase OS=Bo yes N/A 0.177 0.027 0.388 1e-08
>sp|P12276|FAS_CHICK Fatty acid synthase OS=Gallus gallus GN=FASN PE=1 SV=5 Back     alignment and function desciption
 Score = 69.3 bits (168), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 48/71 (67%)

Query: 304 RPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHI 363
           RP+WY+ SGMG+QW GM   L+ + +F QSI +S EAL+     +  ++ + D +TF+  
Sbjct: 489 RPLWYICSGMGTQWKGMGLSLMKLDLFRQSILRSDEALKSTGLKVSDLLLNADENTFDDT 548

Query: 364 LNSFVSIAAVQ 374
           +++FV +AA+Q
Sbjct: 549 VHAFVGLAAIQ 559
Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities and an acyl carrier protein.
Gallus gallus (taxid: 9031)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: 1EC: 4
>sp|P12785|FAS_RAT Fatty acid synthase OS=Rattus norvegicus GN=Fasn PE=1 SV=3 Back     alignment and function description
>sp|P19096|FAS_MOUSE Fatty acid synthase OS=Mus musculus GN=Fasn PE=1 SV=2 Back     alignment and function description
>sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens GN=FASN PE=1 SV=3 Back     alignment and function description
>sp|Q71SP7|FAS_BOVIN Fatty acid synthase OS=Bos taurus GN=FASN PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
345479260 2408 PREDICTED: fatty acid synthase-like isof 0.189 0.031 0.584 6e-20
345479258 2398 PREDICTED: fatty acid synthase-like isof 0.189 0.031 0.584 6e-20
157115283 2422 fatty acid synthase [Aedes aegypti] gi|1 0.215 0.035 0.528 2e-19
195454515 2529 GK18431 [Drosophila willistoni] gi|19417 0.253 0.039 0.458 2e-18
194760591 2550 GF14401 [Drosophila ananassae] gi|190616 0.253 0.039 0.472 2e-18
158299938 2446 AGAP009176-PA [Anopheles gambiae str. PE 0.205 0.033 0.566 2e-18
195030424 2433 GH10963 [Drosophila grimshawi] gi|193904 0.255 0.041 0.485 3e-18
170038418 2419 fatty acid synthase S-acetyltransferase 0.283 0.046 0.425 3e-18
198474816 2603 GA17497 [Drosophila pseudoobscura pseudo 0.253 0.038 0.458 3e-18
195148438 2603 GL18554 [Drosophila persimilis] gi|19410 0.253 0.038 0.458 3e-18
>gi|345479260|ref|XP_001605059.2| PREDICTED: fatty acid synthase-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 62/77 (80%)

Query: 298 DFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDA 357
           D+NG+KRP+WYVFSGMGSQWAGM K L+ IP F++S+R+ A+AL+    DL+ +I +   
Sbjct: 519 DYNGDKRPIWYVFSGMGSQWAGMGKDLMCIPTFNKSLRRCADALKPCGVDLLNLILNGTD 578

Query: 358 DTFEHILNSFVSIAAVQ 374
           +T+E +LNSFVSIAA+Q
Sbjct: 579 ETYEDVLNSFVSIAAIQ 595

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345479258|ref|XP_003423914.1| PREDICTED: fatty acid synthase-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|157115283|ref|XP_001658180.1| fatty acid synthase [Aedes aegypti] gi|108883503|gb|EAT47728.1| AAEL001194-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|195454515|ref|XP_002074274.1| GK18431 [Drosophila willistoni] gi|194170359|gb|EDW85260.1| GK18431 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|194760591|ref|XP_001962523.1| GF14401 [Drosophila ananassae] gi|190616220|gb|EDV31744.1| GF14401 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|158299938|ref|XP_319941.4| AGAP009176-PA [Anopheles gambiae str. PEST] gi|157013759|gb|EAA15087.4| AGAP009176-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|195030424|ref|XP_001988068.1| GH10963 [Drosophila grimshawi] gi|193904068|gb|EDW02935.1| GH10963 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|170038418|ref|XP_001847047.1| fatty acid synthase S-acetyltransferase [Culex quinquefasciatus] gi|167882090|gb|EDS45473.1| fatty acid synthase S-acetyltransferase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|198474816|ref|XP_001356821.2| GA17497 [Drosophila pseudoobscura pseudoobscura] gi|198138561|gb|EAL33887.2| GA17497 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195148438|ref|XP_002015181.1| GL18554 [Drosophila persimilis] gi|194107134|gb|EDW29177.1| GL18554 [Drosophila persimilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
FB|FBgn0027571 2544 CG3523 [Drosophila melanogaste 0.225 0.034 0.488 1.1e-14
FB|FBgn0042627 2409 v(2)k05816 "v(2)k05816" [Droso 0.197 0.032 0.487 2.9e-12
FB|FBgn0040001 2394 CG17374 [Drosophila melanogast 0.192 0.031 0.447 4.6e-09
UNIPROTKB|E1BWG0 2446 FASN "Fatty acid synthase" [Ga 0.179 0.029 0.408 5.9e-08
UNIPROTKB|F1N8A8 2512 FASN "Fatty acid synthase" [Ga 0.179 0.028 0.408 6e-08
UNIPROTKB|P12276 2512 FASN "Fatty acid synthase" [Ga 0.179 0.028 0.408 6e-08
UNIPROTKB|E1BW07 2513 FASN "Fatty acid synthase" [Ga 0.179 0.028 0.408 6e-08
RGD|620665 2505 Fasn "fatty acid synthase" [Ra 0.182 0.028 0.416 1.6e-07
UNIPROTKB|P12785 2505 Fasn "Fatty acid synthase" [Ra 0.182 0.028 0.416 1.6e-07
ZFIN|ZDB-GENE-030131-7802 2514 fasn "fatty acid synthase" [Da 0.179 0.028 0.408 1.7e-07
FB|FBgn0027571 CG3523 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 223 (83.6 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 44/90 (48%), Positives = 63/90 (70%)

Query:   286 VFSGMGS-QWAGMDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGE 344
             V S  G+ Q   ++ N +KRP+WY++SGMGSQWA M K L+ I  F ++I++ A+ L+ E
Sbjct:   615 VVSSKGTHQREVIESNDDKRPIWYIYSGMGSQWASMAKDLMKIEAFAKTIQRCADVLKPE 674

Query:   345 NFDLIPVITSEDADTFEHILNSFVSIAAVQ 374
               DLI V+T     +FE+ILNSF+SIAA+Q
Sbjct:   675 GVDLIDVLTRSTDKSFENILNSFISIAAMQ 704
GO:0004312 "fatty acid synthase activity" evidence=ISS
GO:0016295 "myristoyl-[acyl-carrier-protein
GO:0009058 "biosynthetic process" evidence=IEA
GO:0004314 "[acyl-carrier-protein
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0004313 "[acyl-carrier-protein
GO:0004316 "3-oxoacyl-[acyl-carrier-protein
GO:0016296 "palmitoyl-[acyl-carrier-protein
GO:0004320 "oleoyl-[acyl-carrier-protein
GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein
GO:0004319 "enoyl-[acyl-carrier-protein
GO:0004315 "3-oxoacyl-[acyl-carrier-protein
GO:0000166 "nucleotide binding" evidence=IEA
GO:0005811 "lipid particle" evidence=IDA
FB|FBgn0042627 v(2)k05816 "v(2)k05816" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0040001 CG17374 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWG0 FASN "Fatty acid synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8A8 FASN "Fatty acid synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P12276 FASN "Fatty acid synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BW07 FASN "Fatty acid synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|620665 Fasn "fatty acid synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P12785 Fasn "Fatty acid synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7802 fasn "fatty acid synthase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
pfam00698 319 pfam00698, Acyl_transf_1, Acyl transferase domain 9e-12
smart00827 298 smart00827, PKS_AT, Acyl transferase domain in pol 9e-08
pfam00698319 pfam00698, Acyl_transf_1, Acyl transferase domain 0.002
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain Back     alignment and domain information 
 Score = 65.1 bits (159), Expect = 9e-12
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 307 WYVFSGMGSQWAGMVKGLLH-IPVFDQSIRKSAEALRGE-NFDLIPVITSEDADTFEHIL 364
            +VFSG GSQWAGM   LL   PVF  +I +  EA + +  F ++ V+ +      E + 
Sbjct: 1   VFVFSGQGSQWAGMGMDLLKTSPVFAAAIARCDEAFKPQYGFSVLDVLRNNPEGLLERVD 60

Query: 365 NSFVSIAAVQ 374
               ++ A+Q
Sbjct: 61  VVQPALFAMQ 70

Length = 319
>gnl|CDD|214838 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase (PKS) enzymes Back     alignment and domain information
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 395
KOG1202|consensus 2376 99.92
PF00698318 Acyl_transf_1: Acyl transferase domain; InterPro: 99.86
TIGR00128290 fabD malonyl CoA-acyl carrier protein transacylase 99.82
smart00827298 PKS_AT Acyl transferase domain in polyketide synth 99.82
TIGR03131295 malonate_mdcH malonate decarboxylase, epsilon subu 99.78
COG0331310 FabD (acyl-carrier-protein) S-malonyltransferase [ 99.78
PLN02752343 [acyl-carrier protein] S-malonyltransferase 99.73
TIGR02813 2582 omega_3_PfaA polyketide-type polyunsaturated fatty 99.68
TIGR02816538 pfaB_fam PfaB family protein. The protein PfaB is 99.66
COG3321 1061 Polyketide synthase modules and related proteins [ 99.6
PF00698 318 Acyl_transf_1: Acyl transferase domain; InterPro: 99.35
KOG2926|consensus386 99.24
KOG1202|consensus 2376 99.22
TIGR00128 290 fabD malonyl CoA-acyl carrier protein transacylase 99.21
PLN02752 343 [acyl-carrier protein] S-malonyltransferase 99.14
TIGR03131 295 malonate_mdcH malonate decarboxylase, epsilon subu 99.05
smart00827 298 PKS_AT Acyl transferase domain in polyketide synth 99.05
TIGR02813 2582 omega_3_PfaA polyketide-type polyunsaturated fatty 98.85
TIGR02816 538 pfaB_fam PfaB family protein. The protein PfaB is 98.79
COG0331 310 FabD (acyl-carrier-protein) S-malonyltransferase [ 98.7
COG3321 1061 Polyketide synthase modules and related proteins [ 98.51
KOG2926|consensus 386 98.15
>KOG1202|consensus Back     alignment and domain information 
Probab=99.92  E-value=1.1e-25  Score=244.41  Aligned_cols=198  Identities=27%  Similarity=0.378  Sum_probs=166.4

Q ss_pred             CCcchhHHHHhhhccccccc--cceeeeccc-----cccCCCC--C-------CChhHHHHHHHhhhChhHHHHHHHHHh
Q psy9444         131 APENFNGLIESIEKKAIDVK--RALTILSQL-----VLENSAG--A-------LKLKIAEIASDKTAETAFANTLIPILE  194 (395)
Q Consensus       131 ~~~~~~~L~~~i~~~~i~~~--r~~~~~~~~-----~~~~s~~--~-------QGsQ~~gMGr~L~~~pvFr~~l~~~~~  194 (395)
                      -|.+|-.|++.|+..|++.|  |||+++...     +.+...+  +       .||||+||+++||+-+.||+++.+|++
T Consensus       455 ~D~~~l~llndi~s~p~~~~pFRGY~vl~~e~~~~ev~~~~~~eRPiwfiysGMGsQW~~Ma~~LMkl~~F~dsi~~~ae  534 (2376)
T KOG1202|consen  455 DDLELLSLLNDIASVPAPLHPFRGYAVLGGERGGPEVQQVPAGERPIWFIYSGMGSQWAGMAKDLMKLERFRDSIQRSAE  534 (2376)
T ss_pred             chHHHHHHHHHHhcCCccCCcccceEEeccccCCcceeecCCCCcceEEEEeCCcchhhHHHHHHhhhHHHHHHHHHHHh
Confidence            57788899999999999999  999999982     2222222  2       999999999999999999999999999


Q ss_pred             hCCcCCCCee-eccCCCc-chHHHHHHHHh---------------cCCCcEEEecCCChhHHHHHHhcCCCCHHHHHHHH
Q psy9444         195 SEPMLSVDLT-VHSNAPE-NFNGLIESIDR---------------AGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCA  257 (395)
Q Consensus       195 ~l~~~g~~l~-~~~~~~~-~l~~l~~s~~~---------------~I~PdavvGHSlG~~E~AAAyaAGalTLedai~lv  257 (395)
                      .++++|.|+. .+.+.++ .|+++.+++.+               +|+||.++|||+|  |+.|+|++|++|.|+++.++
T Consensus       535 ~l~~~gldv~~vL~~s~~~tfdn~l~sfvsitAiQiaLtDlLs~lgi~PDGIvGHS~G--Elgc~YaDGclt~EqtvlaA  612 (2376)
T KOG1202|consen  535 VLKPFGLDVIDVLTRSDESTFDNILNSFVSITAIQIALTDLLSCLGIRPDGIVGHSLG--ELGCGYADGCLTQEQTVLAA  612 (2376)
T ss_pred             hhcccCcchhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccc--hhcccccccccCHHHHHHHH
Confidence            9999999998 6655555 78877776532               3999999999999  99999999999999999999


Q ss_pred             HHHhHhhhhccCCCCcccccccCCCceeeeecCcccccccccC------CCCCCceeeecCccccHHHHHHHHccCchhh
Q psy9444         258 YWRGRSILECKLAPGRNDFNGEKRPVWYVFSGMGSQWAGMDFN------GEKRPVWYVFSGMGSQWAGMVKGLLHIPVFD  331 (395)
Q Consensus       258 ~~Rg~lm~~~~~~~G~MaAvg~~~r~~~V~v~l~~~~~~~~i~------~~n~p~~fVFSGqGsq~~~Mg~~L~~~pVFr  331 (395)
                      ||||+.+.+...++|+|+|           ++++.+.....+|      |.|+.-.+++||+.+....|..+|...++|.
T Consensus       613 YwRG~sild~~l~kGaMAA-----------VGLsWEq~~~~~P~~~~paCHNs~D~~TiSGp~a~v~~~v~qL~~~gvFa  681 (2376)
T KOG1202|consen  613 YWRGQSILDTHLPKGAMAA-----------VGLSWEQCKSRCPPDVVPACHNSKDNVTISGPQASVFAFVEQLRAEGVFA  681 (2376)
T ss_pred             HHcCceeccccCCCcchhh-----------hcCCHHHHhccCCCcccccccCCCCceEecCChHHHHHHHHHhhhcCeee
Confidence            9999999988778999998           4555444444443      4678888999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy9444         332 QSIRKSAEAL  341 (395)
Q Consensus       332 ~~L~~~d~aL  341 (395)
                      +.++..--++
T Consensus       682 k~V~t~G~aF  691 (2376)
T KOG1202|consen  682 KEVRTGGYAF  691 (2376)
T ss_pred             eEecCCCccc
Confidence            8877654333

>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2 Back     alignment and domain information
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase Back     alignment and domain information
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes Back     alignment and domain information
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit Back     alignment and domain information
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism] Back     alignment and domain information
>PLN02752 [acyl-carrier protein] S-malonyltransferase Back     alignment and domain information
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA Back     alignment and domain information
>TIGR02816 pfaB_fam PfaB family protein Back     alignment and domain information
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2 Back     alignment and domain information
>KOG2926|consensus Back     alignment and domain information
>KOG1202|consensus Back     alignment and domain information
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase Back     alignment and domain information
>PLN02752 [acyl-carrier protein] S-malonyltransferase Back     alignment and domain information
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit Back     alignment and domain information
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes Back     alignment and domain information
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA Back     alignment and domain information
>TIGR02816 pfaB_fam PfaB family protein Back     alignment and domain information
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism] Back     alignment and domain information
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG2926|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
2jfd_A 425 Structure Of The Mat Domain Of Human Fas Length = 4 1e-10
3hhd_A 965 Structure Of The Human Fatty Acid Synthase Ks-Mat D 1e-10
2jfk_A 433 Structure Of The Mat Domain Of Human Fas With Malon 1e-10
2vz8_A 2512 Crystal Structure Of Mammalian Fatty Acid Synthase 2e-10
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas Length = 425 Back     alignment and structure 
Iteration: 1

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 303 KRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEH 362
           +RP+W++ SGMG+QW GM   L+ +  F  SI +S EA++     +  ++ S D  TF+ 
Sbjct: 91  ERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDD 150
Query: 363 ILNSFVSIAAVQ 374
           I++SFVS+ A+Q
Sbjct: 151 IVHSFVSLTAIQ 162
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain As A Framework For Inhibitor Design. Length = 965 Back     alignment and structure
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa Length = 433 Back     alignment and structure
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
3hhd_A 965 Fatty acid synthase; transferase, multienzyme, meg 1e-21
3hhd_A 965 Fatty acid synthase; transferase, multienzyme, meg 6e-07
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 4e-21
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 2e-07
2qo3_A 915 Eryaii erythromycin polyketide synthase modules 3; 8e-06
2hg4_A 917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 1e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 Back     alignment and structure
 Score = 96.1 bits (240), Expect = 1e-21
 Identities = 29/74 (39%), Positives = 47/74 (63%)

Query: 301 GEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTF 360
             +RP+W++ SGMG+QW GM   L+ +  F  SI +S EA++     +  ++ S D  TF
Sbjct: 489 AGERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTF 548

Query: 361 EHILNSFVSIAAVQ 374
           + I++SFVS+ A+Q
Sbjct: 549 DDIVHSFVSLTAIQ 562
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 Back     alignment and structure
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 Back     alignment and structure
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 Back     alignment and structure
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Length = 915 Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Length = 917 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
3tzy_A491 Polyketide synthase PKS13; acyltransferase, long f 99.93
3ezo_A318 Malonyl COA-acyl carrier protein transacylase; ssg 99.91
3hhd_A 965 Fatty acid synthase; transferase, multienzyme, meg 99.9
2h1y_A321 Malonyl coenzyme A-acyl carrier protein transacyl; 99.9
3ptw_A336 Malonyl COA-acyl carrier protein transacylase; str 99.9
3im9_A316 MCAT, MCT, malonyl COA-acyl carrier protein transa 99.89
3im8_A307 Malonyl acyl carrier protein transacylase; fatty a 99.89
3tqe_A316 Malonyl-COA-[acyl-carrier-protein] transacylase; f 99.89
3k89_A314 Malonyl COA-ACP transacylase; bacterial blight, XO 99.89
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 99.88
2qo3_A 915 Eryaii erythromycin polyketide synthase modules 3; 99.88
3qat_A318 Malonyl COA-acyl carrier protein transacylase; sea 99.88
1mla_A309 Malonyl-coenzyme A acyl carrier protein transacyla 99.88
2qc3_A303 MCT, malonyl COA-acyl carrier protein transacylase 99.88
4amm_A401 DYNE8; transferase; 1.40A {Micromonospora chersina 99.87
2hg4_A 917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 99.87
2cuy_A305 Malonyl COA-[acyl carrier protein] transacylase; t 99.87
1nm2_A317 Malonyl COA:acyl carrier protein malonyltransfera; 99.86
2c2n_A339 Malonyl COA-acyl carrier protein transacylase; fat 99.86
3sbm_A281 DISD protein, DSZD; transferase; HET: P6G; 1.35A { 99.84
3g87_A 394 Malonyl COA-acyl carrier protein transacylase; ssg 99.83
3zen_D 3089 Fatty acid synthase; transferase, mycolic acid bio 99.68
2uv8_G2051 Fatty acid synthase subunit beta (FAS1); fatty aci 99.67
2uva_G2060 Fatty acid synthase beta subunits; fungal, dehydra 99.66
2uv8_G 2051 Fatty acid synthase subunit beta (FAS1); fatty aci 99.52
3tzy_A 491 Polyketide synthase PKS13; acyltransferase, long f 99.51
3zen_D 3089 Fatty acid synthase; transferase, mycolic acid bio 99.49
3hhd_A 965 Fatty acid synthase; transferase, multienzyme, meg 99.46
3ptw_A 336 Malonyl COA-acyl carrier protein transacylase; str 99.45
2h1y_A 321 Malonyl coenzyme A-acyl carrier protein transacyl; 99.43
3ezo_A 318 Malonyl COA-acyl carrier protein transacylase; ssg 99.42
3k89_A 314 Malonyl COA-ACP transacylase; bacterial blight, XO 99.41
3im8_A 307 Malonyl acyl carrier protein transacylase; fatty a 99.4
3tqe_A 316 Malonyl-COA-[acyl-carrier-protein] transacylase; f 99.4
1mla_A 309 Malonyl-coenzyme A acyl carrier protein transacyla 99.38
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 99.35
2uva_G 2060 Fatty acid synthase beta subunits; fungal, dehydra 99.34
3qat_A 318 Malonyl COA-acyl carrier protein transacylase; sea 99.34
2qc3_A 303 MCT, malonyl COA-acyl carrier protein transacylase 99.32
2cuy_A 305 Malonyl COA-[acyl carrier protein] transacylase; t 99.31
2qo3_A 915 Eryaii erythromycin polyketide synthase modules 3; 99.3
2hg4_A 917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 99.27
1nm2_A 317 Malonyl COA:acyl carrier protein malonyltransfera; 99.24
3im9_A 316 MCAT, MCT, malonyl COA-acyl carrier protein transa 99.21
2c2n_A 339 Malonyl COA-acyl carrier protein transacylase; fat 99.13
3g87_A 394 Malonyl COA-acyl carrier protein transacylase; ssg 99.11
3sbm_A 281 DISD protein, DSZD; transferase; HET: P6G; 1.35A { 99.03
4amm_A 401 DYNE8; transferase; 1.40A {Micromonospora chersina 98.94
>3tzy_A Polyketide synthase PKS13; acyltransferase, long fatty acid chain transferase, acyl CAR protein, transferase; HET: PLM; 2.20A {Mycobacterium tuberculosis} PDB: 3tzw_A 3tzx_A* 3tzz_A* Back     alignment and structure
Probab=99.93  E-value=3.2e-28  Score=252.70  Aligned_cols=217  Identities=14%  Similarity=0.079  Sum_probs=149.1

Q ss_pred             hccchhhhhhhhhcchhhcccCcc--ee-eeeEEeecCCcchhHHHHhhhccccccccceeeecc---------------
Q psy9444          97 IASDKTAETAFANTLIPILESEPM--LS-VDLTVHSNAPENFNGLIESIEKKAIDVKRALTILSQ---------------  158 (395)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~L~~~i~~~~i~~~r~~~~~~~---------------  158 (395)
                      -|.++.+++++|.+|..+|+++|-  .+ .|+.+             .+.+|....||...+...               
T Consensus        59 SA~s~~aL~~~a~~l~~~L~~~~~~~~~l~dla~-------------tla~R~~~~~R~~vva~~~~el~~~L~a~a~g~  125 (491)
T 3tzy_A           59 SAFLTSRKKAAAAELADWMQSPEGQASSLESIGR-------------SLSRRNHGRSRAVVLAHDHDEAIKGLRAVAAGK  125 (491)
T ss_dssp             EESSHHHHHHHHHHHHHHHHSHHHHTSCHHHHHH-------------HHHHSCCCSEEEEEEESSHHHHHHHHHHHHTTC
T ss_pred             eCCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH-------------HHhcccCCCceEEEEECCHHHHHHhhhhhhcCC
Confidence            367899999999999999998763  22 33332             222333334444333322               


Q ss_pred             ---ccc---cCCCC-------CCChhHHHHHHHhhh-ChhHHHHHHHHHhhCCcC-CCCee-eccCCCcchHHHHHHHH-
Q psy9444         159 ---LVL---ENSAG-------ALKLKIAEIASDKTA-ETAFANTLIPILESEPML-SVDLT-VHSNAPENFNGLIESID-  221 (395)
Q Consensus       159 ---~~~---~~s~~-------~QGsQ~~gMGr~L~~-~pvFr~~l~~~~~~l~~~-g~~l~-~~~~~~~~l~~l~~s~~-  221 (395)
                         .+.   ....+       .|||||+|||++||+ +|+||+.+++|+++++.+ ++++. .+..+++ ..++.++++ 
T Consensus       126 ~~~~~~~~~~~~~~~~vfvF~GQGsQ~~gMG~~L~~~~p~fr~~~~~~~~~l~~~~~~sl~~~l~~~~~-~~~~~~~Qpa  204 (491)
T 3tzy_A          126 QAPNVFSVDGPVTTGPVWVLAGFGAQHRKMGKSLYLRNEVFAAWIEKVDALVQDELGYSVLELILDDAQ-DYGIETTQVT  204 (491)
T ss_dssp             CCTTEEEESSCCSSCCEEEECCTTTCCTTTTHHHHHHCHHHHHHHHHHHHHHHHHHSSCHHHHHHCTTC-CCCHHHHHHH
T ss_pred             CCCCceeccCCCCCCEEEEECCCCcchhhhHHHHhhcCHHHHHHHHHHHHHhhhhhchhHHHHhcCCch-hhhhHHHHHH
Confidence               000   00111       199999999999995 999999999999998764 88888 4444332 111222221 


Q ss_pred             --------------hcCCCcEEEecCCChhHHHHHHhcCCCCHHHHHHHHHHHhHhhhhcc-CCCCcccccccCCCceee
Q psy9444         222 --------------RAGRPSIQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECK-LAPGRNDFNGEKRPVWYV  286 (395)
Q Consensus       222 --------------~~I~PdavvGHSlG~~E~AAAyaAGalTLedai~lv~~Rg~lm~~~~-~~~G~MaAvg~~~r~~~V  286 (395)
                                    .+|+|++++|||+|  ||+|+|++|+||++|++++++.||++|++.. ...|+|.++       -.
T Consensus       205 lfa~q~Al~~ll~~~Gv~P~av~GHS~G--E~aAa~~AG~lsleda~~lv~~Rg~lm~~~~~~~~g~m~~~-------ma  275 (491)
T 3tzy_A          205 IFAIQIALGELLRHHGAKPAAVIGQSLG--EAASAYFAGGLSLRDATRAICSRSHLMGEGEAMLFGEYIRL-------MA  275 (491)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSEEEECGGG--HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCCGGGCCE-------EE
T ss_pred             HHHHHHHHHHHHHHcCCCcceEeecCHh--HHHHHHHcCCchhhhhhhhhhhhhhhhhhccccCCCcchhh-------hh
Confidence                          26999999999999  9999999999999999999999999998763 345665431       01


Q ss_pred             eecCcccccc--------cccCCCCCCceeeecCccccHHHHHHHHccCchhhHHHHH
Q psy9444         287 FSGMGSQWAG--------MDFNGEKRPVWYVFSGMGSQWAGMVKGLLHIPVFDQSIRK  336 (395)
Q Consensus       287 ~v~l~~~~~~--------~~i~~~n~p~~fVFSGqGsq~~~Mg~~L~~~pVFr~~L~~  336 (395)
                      .+..+.+...        -.+.+.|+|..+|+||.......+.+.|...++|.+.|+.
T Consensus       276 ~v~~~~~~v~~~~~~~~~v~iA~~NsP~~~ViSG~~~ai~~~~~~l~~~g~~~~~L~V  333 (491)
T 3tzy_A          276 LVEYSADEIREVFSDFPDLEVCVYAAPTQTVIGGPPEQVDAILARAEAEGKFARKFAT  333 (491)
T ss_dssp             EESCCHHHHHHHGGGCTTCEEEEEEETTEEEEEECHHHHHHHHHHHHHHTCCEEEESC
T ss_pred             hccchHHHHHhhhcccccceeeeecCCCcEEeCCcHHHHHHHHHHHHhcCceEEeccc
Confidence            1222222211        2345679999999999999999999988765566555543
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Back     alignment and structure
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT, transferase; 2.50A {Helicobacter pylori} Back     alignment and structure
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics, protein structure initiative; 2.10A {Clostridium perfringens} Back     alignment and structure
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus} Back     alignment and structure
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA, acyl carrier protein TRAN (MCAT), FABD, acyltransferase; 2.10A {Streptococcus pneumoniae} Back     alignment and structure
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty acid/phospholipid metabolism, transferase; HET: MSE; 1.50A {Coxiella burnetii} Back     alignment and structure
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. ORYZ KACC10331, transferase; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A* Back     alignment and structure
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Back     alignment and structure
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Back     alignment and structure
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural genomics center for infectious disease, S bartonella, CAT-scratch disease; 1.60A {Bartonella henselae} Back     alignment and structure
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase; acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1 d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A 3hjv_A* Back     alignment and structure
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP transacylase, , nucleophili fatty acids biosynthesis; 2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A Back     alignment and structure
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Back     alignment and structure
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} Back     alignment and structure
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor} SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B Back     alignment and structure
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase, lipid synthesis, mitochondrion transfer transferase; HET: AE4; 1.55A {Homo sapiens} Back     alignment and structure
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium cellulosum} PDB: 3rgi_A Back     alignment and structure
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid, decode biostructures, dried seaweed, acyltran transferase; 2.30A {Burkholderia pseudomallei} Back     alignment and structure
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Back     alignment and structure
>3tzy_A Polyketide synthase PKS13; acyltransferase, long fatty acid chain transferase, acyl CAR protein, transferase; HET: PLM; 2.20A {Mycobacterium tuberculosis} PDB: 3tzw_A 3tzx_A* 3tzz_A* Back     alignment and structure
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* Back     alignment and structure
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Back     alignment and structure
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics, protein structure initiative; 2.10A {Clostridium perfringens} Back     alignment and structure
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT, transferase; 2.50A {Helicobacter pylori} Back     alignment and structure
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. ORYZ KACC10331, transferase; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A* Back     alignment and structure
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA, acyl carrier protein TRAN (MCAT), FABD, acyltransferase; 2.10A {Streptococcus pneumoniae} Back     alignment and structure
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty acid/phospholipid metabolism, transferase; HET: MSE; 1.50A {Coxiella burnetii} Back     alignment and structure
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase; acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1 d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A 3hjv_A* Back     alignment and structure
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Back     alignment and structure
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural genomics center for infectious disease, S bartonella, CAT-scratch disease; 1.60A {Bartonella henselae} Back     alignment and structure
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP transacylase, , nucleophili fatty acids biosynthesis; 2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A Back     alignment and structure
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} Back     alignment and structure
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Back     alignment and structure
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor} SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B Back     alignment and structure
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus} Back     alignment and structure
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase, lipid synthesis, mitochondrion transfer transferase; HET: AE4; 1.55A {Homo sapiens} Back     alignment and structure
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid, decode biostructures, dried seaweed, acyltran transferase; 2.30A {Burkholderia pseudomallei} Back     alignment and structure
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium cellulosum} PDB: 3rgi_A Back     alignment and structure
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 395
d1nm2a1 253 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of m 2e-08
d1mlaa1 235 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of m 5e-08
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]} Length = 253 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: FabD-like
domain: Catalytic domain of malonyl-CoA ACP transacylase FabD
species: Streptomyces coelicolor A3(2) [TaxId: 100226]

 Score = 52.2 bits (124), Expect = 2e-08
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 308 YVFSGMGSQWAGMVKGLLHIPVFDQSIRKSAEALRGENFDLIPVITSEDADTFEHILNSF 367
            V  G G+Q  G +   L +P     +   ++A+     DL    T  DAD       + 
Sbjct: 5   LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAI---GLDLAHFGTKADADEIRDTSVAQ 61

Query: 368 VSIAAVQ 374
             + A  
Sbjct: 62  PLLVAAG 68
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
d1mlaa1235 Catalytic domain of malonyl-CoA ACP transacylase F 99.77
d1nm2a1253 Catalytic domain of malonyl-CoA ACP transacylase F 99.67
d1mlaa1 235 Catalytic domain of malonyl-CoA ACP transacylase F 99.32
d1nm2a1 253 Catalytic domain of malonyl-CoA ACP transacylase F 99.07
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: FabD-like
domain: Catalytic domain of malonyl-CoA ACP transacylase FabD
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=5.7e-20  Score=171.12  Aligned_cols=97  Identities=16%  Similarity=0.220  Sum_probs=79.3

Q ss_pred             CCChhHHHHHHHhhh-ChhHHHHHHHHHhhCCcCCCCee-eccCCCc-chHHHHHHHH----------------hcCCCc
Q psy9444         167 ALKLKIAEIASDKTA-ETAFANTLIPILESEPMLSVDLT-VHSNAPE-NFNGLIESID----------------RAGRPS  227 (395)
Q Consensus       167 ~QGsQ~~gMGr~L~~-~pvFr~~l~~~~~~l~~~g~~l~-~~~~~~~-~l~~l~~s~~----------------~~I~Pd  227 (395)
                      .|||||+|||++||+ +|.||+.+++|++.+   |+++. .+...++ .++++.++++                .+++|+
T Consensus         8 GQGsQ~~gMg~~L~~~~p~~r~~~~~~~~~l---~~~l~~~~~~~~~~~~~~t~~~qpai~~~~~al~~~l~~~~g~~p~   84 (235)
T d1mlaa1           8 GQGSQTVGMLADMAASYPIVEETFAEASAAL---GYDLWALTQQGPAEELNKTWQTQPALLTASVALYRVWQQQGGKAPA   84 (235)
T ss_dssp             CTTCCCTTTTHHHHHHCHHHHHHHHHHHHHH---TSCHHHHHHHCCHHHHTSHHHHHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             ChhhhHHHHHHHHHHCCHHHHHHHHHHHHHh---CCCHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence            499999999999995 899999999999876   67776 3333332 3333333221                258999


Q ss_pred             EEEecCCChhHHHHHHhcCCCCHHHHHHHHHHHhHhhhhcc
Q psy9444         228 IQCGHFTGRKEVACAYADGTLTAEQTILCAYWRGRSILECK  268 (395)
Q Consensus       228 avvGHSlG~~E~AAAyaAGalTLedai~lv~~Rg~lm~~~~  268 (395)
                      +++|||+|  ||+|+|++|++|++|+++++..||.+|++..
T Consensus        85 ~v~GhSlG--E~aAl~~aG~ls~e~~~~lv~~Rg~~m~~~~  123 (235)
T d1mlaa1          85 MMAGHSLG--EYSALVCAGVIDFADAVRLVEMRGKFMQEAV  123 (235)
T ss_dssp             EEEESTHH--HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHS
T ss_pred             eeeeccch--HHHHHHHcCCcccccHHHHHHHHHHHHHHcC
Confidence            99999999  9999999999999999999999999998763
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]} Back     information, alignment and structure
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]} Back     information, alignment and structure