Psyllid ID: psy9472

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------
Protein Sequence
LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANARRFHRPSTYSSTRKWDSMSTTHNPNNLQMNTFRRAPQNDPVTMATEITKITNGDQIIINTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSRNANARRFHRPSTYSSTRKWDSVSTTHNPNNLQMNTFRRAPQNDPVTMATEITKITNGDQIIM
Secondary Structure (PSIPRED)
ccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccHHHHHccccccHHHHHHHHHHHHHHHHHHHccHEEEEEEEEccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcHcHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccHccccccccccHHHHHHHHHHHHHHHHHHHccHEEEEEEEEcccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEcccccccccEcc
Coil and Loop (DISEMBL)
LSADRFFAIVDPlrklhsgiggkratRCTILIVAAIWIFAILCAIPSMTLSYVRAFkddtnnntlfescypfppidgypnyprtVIIMRFLIYYAVPLLIIACFYSLMARSLILstknmpgelqgQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFyinptapddyndFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIInsrnanarrfhrpstysstrkwdsmstthnpnnlqmntfrrapqndpvtmATEItkitngdqiiintslstdfkpyserletylVPIVFAFIFVVGVLGNGTLVLIFINhksmrnvpnIYILSLALGDLLVILTCvpftstvytfeswpygesickisestkdiSVGVSVFTLTALSADRFFAIVDPLrklhsgiggkratRCTILIVAAIWIFAILCAIPSMTLSYVRAFkddtnnntlfescypfppidgypnyprtVIIMRFLIYYAVPLLIIACFYSLMARSLILstknmpgelqgQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFyinptapddyndFWHILRIMSSKIInsrnanarrfhrpstysstrkwdsvstthnpnnlqmntfrrapqndpvtMATEItkitngdqiim
Flexible Loop (DISEMBL)
lsadrffaivdplrklhsgiggkratRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKiinsrnanarrfhrpstysstrkwdsmstthnpnnlqmntfrrapqndPVTMATEitkitngdqiiINTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLrklhsgiggkratRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKiinsrnanarrfhrpstysstrkwdsvstthnpnnlqmntfrrapqndpvTMATeitkitngdqiim
Low Complexity Region (SEG)
LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANARRFHRPSTYSSTRKWDSMSTTHNPNNLQMNTFRRAPQNDPVTMATEITKITNGDQIIINTSLSTDFKPYSERLETYLVPIVFAFIFvvgvlgngtlvlIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSRNANARRFHRPSTYSSTRKWDSVSTTHNPNNLQMNTFRRAPQNDPVTMATEITKITNGDQIIM
Disordered region (IsUnstruct)
****RFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKN*********RQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIIN************************************************MATEITKITNGDQIIINTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKN*********RQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIIN****************************************************************
Disordered Region (DISOPRED)
LSADRFFAIVDPLRKLHSG*GGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLI***********************AKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMS*************************WDSMSTTHNPNNLQMNTFRRAPQNDPVTMATEITKITNGDQIIINTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSG*GGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLI***********************AKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSRNANARRFHRPSTYSSTRKW*******************************************
Disordered Region (DISEMBL)
LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANARRF***************STTHNPNNLQMNTFRRAPQNDPVTMATEITKITNGDQIIINTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSRNANARRF***************STTHNPNNLQMNTFRRAPQNDPVTMATEITKITNGDQIIM
Disordered Region (DISPRO)
LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILST**************RARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSS************************************************************************STDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILST************QIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSRNANARRFHRPSTYSSTRKWDSVSTTH************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANARRFHRPSTYSSTRKWDSMSTTHNPNNLQMNTFRRAPQNDPVTMATEITKITNGDQIIINTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSRNANARRFHRPSTYSSTRKWDSVSTTHNPNNLQMNTFRRAPQNDPVTMATEITKITNGDQIIM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	647	2.2.26 [Sep-21-2011]
Q6H2Y3	398	Bombesin receptor subtype	yes	N/A	0.451	0.733	0.392	7e-50
P47751	392	[Phe13]-bombesin receptor	N/A	N/A	0.428	0.706	0.407	3e-48
Q8K418	399	Bombesin receptor subtype	yes	N/A	0.372	0.604	0.444	3e-48
P24053	390	Neuromedin-B receptor OS=	no	N/A	0.446	0.741	0.379	6e-48
O54799	390	Neuromedin-B receptor OS=	yes	N/A	0.446	0.741	0.382	6e-48
P32247	399	Bombesin receptor subtype	yes	N/A	0.412	0.669	0.415	7e-48
P28336	390	Neuromedin-B receptor OS=	no	N/A	0.438	0.728	0.385	1e-47
O54798	399	Bombesin receptor subtype	no	N/A	0.406	0.659	0.415	4e-47
O97967	399	Bombesin receptor subtype	N/A	N/A	0.442	0.716	0.388	3e-46
P21729	384	Gastrin-releasing peptide	no	N/A	0.378	0.638	0.437	2e-43

>sp|Q6H2Y3|BRS3_MACMU Bombesin receptor subtype-3 OS=Macaca mulatta GN=BRS3 PE=2 SV=1

 Score =  199 bits (505), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 126/321 (39%), Positives = 181/321 (56%), Gaps = 29/321 (9%)

Query: 250 HNPNNLQMNTFRRAPQNDPVTMATEITKITNGDQIIINTSLSTDFKPYSERLETYLVPIV 309
           H+PN   ++          +T  TE + + + D    N   S D  P  E L    + I 
Sbjct: 7   HSPNQTLIS----------ITNDTESSSVVSNDNT--NKGRSGDNSPGIEALCA--IYIT 52

Query: 310 FAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESW 369
           +A I  VG+LGN  L+ +F   KSM+ VPNI+I SLA GDLL++LTCVP  +T Y  E W
Sbjct: 53  YAVIISVGILGNAILIKVFFKTKSMQTVPNIFITSLAFGDLLLLLTCVPVDATHYLAEGW 112

Query: 370 PYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIV 429
            +G   CK+    +  SVGVSVFTLT LSADR+ A+V PL +  S      A   T +  
Sbjct: 113 LFGRIGCKVLSFIRLTSVGVSVFTLTILSADRYKAVVKPLERQPSN-----AILKTCIKA 167

Query: 430 AAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIY 489
             +WI +++ A+P    S V +F+D  N N  FESC  +P          +++   FL++
Sbjct: 168 GCVWIVSMIFALPEAIFSNVYSFRDP-NKNVTFESCTSYPVSKKLLQEIHSLLC--FLVF 224

Query: 490 YAVPLLIIACFYSLMARSLILSTKNMPGELQGQTR-QIRARKKVAKTVLTFVVVFAMCFF 548
           Y +PL II+ +YSL+AR+L  ST N+P E QG  R QI +RK++A+TVL  V +FA+C+ 
Sbjct: 225 YIIPLSIISVYYSLIARTLYKSTLNIPTEEQGHARKQIESRKRIARTVLVLVALFALCWL 284

Query: 549 PQHFFFLWF------YINPTA 563
           P H  +L+       Y++P+A
Sbjct: 285 PNHLLYLYHSFTSQTYVDPSA 305

Role in sperm cell division, maturation, or function. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.
Macaca mulatta (taxid: 9544)

>sp|P47751|BRS4_BOMOR [Phe13]-bombesin receptor OS=Bombina orientalis GN=BB4 PE=2 SV=2

 Score =  193 bits (491), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/292 (40%), Positives = 168/292 (57%), Gaps = 15/292 (5%)

Query: 270 TMATEITKITN----GDQIIINTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLV 325
           T+ + I+ I +     D  I+    S D  P  E L   L+ + +A I  VG+LGN  L+
Sbjct: 11  TLPSAISSIAHLESLNDSFILGAKQSEDVSPGLEILA--LISVTYAVIISVGILGNTILI 68

Query: 326 LIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDI 385
            +F   KSM+ VPNI+I SLA GDLL++LTCVP  ++ Y  ++W +G + CKI    +  
Sbjct: 69  KVFFKIKSMQTVPNIFITSLAFGDLLLLLTCVPVDASRYIVDTWMFGRAGCKIISFIQLT 128

Query: 386 SVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMT 445
           SVGVSVFTLT LSADR+ AIV PL+   S    K   +        +WI ++L A P   
Sbjct: 129 SVGVSVFTLTVLSADRYRAIVKPLQLQTSDAVLKTCGK-----AVCVWIISMLLAAPEAV 183

Query: 446 LSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMA 505
            S +  F   +  NT FE+C P+P  +       ++I   FL++Y VPL II+ +Y L+A
Sbjct: 184 FSDLYEF-GSSEKNTTFEACAPYPVSEKILQETHSLIC--FLVFYIVPLSIISAYYFLIA 240

Query: 506 RSLILSTKNMPGELQGQTR-QIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW 556
           ++L  ST NMP E     R QI +RK+VAKTVL  V +FA+C+ P H  +L+
Sbjct: 241 KTLYKSTFNMPAEEHTHARKQIESRKRVAKTVLVLVALFAVCWLPNHMLYLY 292

The relative rank potency of bombesin-like peptides for this receptor is [Phe13]bombesin > [Leu13]bombesin > GRP > neuromedin-B.

Bombina orientalis (taxid: 8346)

>sp|Q8K418|BRS3_RAT Bombesin receptor subtype-3 OS=Rattus norvegicus GN=Brs3 PE=2 SV=1

 Score =  193 bits (491), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/250 (44%), Positives = 153/250 (61%), Gaps = 9/250 (3%)

Query: 308 IVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFE 367
           I +A I  VG+LGN  L+ +F   KSM+ VPNI+I SLA GDLL++LTCVP  +T Y  E
Sbjct: 52  ITYAVIISVGILGNAILIKVFFKTKSMQTVPNIFITSLAFGDLLLLLTCVPVDATHYLAE 111

Query: 368 SWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTIL 427
            W +G+  CK+    +  SVGVSVFTLT LSADR+ A+V PL +  S    K   +    
Sbjct: 112 GWLFGKVGCKVLSFIRLTSVGVSVFTLTILSADRYKAVVKPLERQPSNAILKTCAK---- 167

Query: 428 IVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFL 487
               IWI A++ A+P    S V  F+D  N N  FESC  +P  +       +++   FL
Sbjct: 168 -AGGIWIMAMIFALPEAIFSNVYTFQDP-NRNVTFESCNSYPISERLLQEIHSLLC--FL 223

Query: 488 IYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTR-QIRARKKVAKTVLTFVVVFAMC 546
           ++Y +PL II+ +YSL+AR+L  ST N+P E Q   R QI +RK++AKTVL  V +FA+C
Sbjct: 224 VFYIIPLSIISVYYSLIARTLYKSTLNIPTEEQSHARKQIESRKRIAKTVLVLVALFALC 283

Query: 547 FFPQHFFFLW 556
           + P H  +L+
Sbjct: 284 WLPNHLLYLY 293

Role in sperm cell division, maturation, or function. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Rattus norvegicus (taxid: 10116)

>sp|P24053|NMBR_RAT Neuromedin-B receptor OS=Rattus norvegicus GN=Nmbr PE=2 SV=1

 Score =  192 bits (489), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 181/306 (59%), Gaps = 17/306 (5%)

Query: 293 DFKPYSERLETYLV-----PIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLAL 347
           DF P S+     LV     P ++  I  VG+LGN  LV IF+ + +MR+VPNI+I +LA 
Sbjct: 28  DFLPDSDGTTAELVIRCVIPSLYLIIISVGLLGNIMLVKIFLTNSTMRSVPNIFISNLAA 87

Query: 348 GDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVD 407
           GDLL++LTCVP  ++ Y F+ W +G+  CK+  + +  SVGVSVFTLTALSADR+ AIV+
Sbjct: 88  GDLLLLLTCVPVDASRYFFDEWVFGKLGCKLIPAIQLTSVGVSVFTLTALSADRYRAIVN 147

Query: 408 PLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYP 467
           P+    SG+        T L    IW+ ++L A+P    S V   +  +++N+ F +C P
Sbjct: 148 PMDMQTSGV-----VLWTSLKAVGIWVVSVLLAVPEAVFSEVA--RIGSSDNSSFTACIP 200

Query: 468 FPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQT-RQI 526
           +P  D    +P+   ++ FL+Y+ +PL+II+ +Y  +A++LI S  N+PGE    T +Q+
Sbjct: 201 YPQTDEL--HPKIHSVLIFLVYFLIPLVIISIYYYHIAKTLIRSAHNLPGEYNEHTKKQM 258

Query: 527 RARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSRN 586
             RK++AK VL FV  F  C+FP H  +L+   N    D      H++  + +++++  N
Sbjct: 259 ETRKRLAKIVLVFVGCFVFCWFPNHILYLYRSFNYKEIDP--SLGHMIVTLVARVLSFSN 316

Query: 587 ANARRF 592
           +    F
Sbjct: 317 SCVNPF 322

Receptor for neuromedin-B.

Rattus norvegicus (taxid: 10116)

>sp|O54799|NMBR_MOUSE Neuromedin-B receptor OS=Mus musculus GN=Nmbr PE=2 SV=1

 Score =  192 bits (489), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 180/306 (58%), Gaps = 17/306 (5%)

Query: 293 DFKPYSERLETYLV-----PIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLAL 347
           DF P S+     LV     P ++  I  VG+LGN  LV IF+ + +MRNVPNI+I +LA 
Sbjct: 28  DFLPDSDGTTAELVIRCVIPSLYLIIISVGLLGNIMLVKIFLTNSAMRNVPNIFISNLAA 87

Query: 348 GDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVD 407
           GDLL++LTCVP  ++ Y F+ W +G+  CK+  + +  SVGVSVFTLTALSADR+ AIV+
Sbjct: 88  GDLLLLLTCVPVDASRYFFDEWVFGKLGCKLIPAIQLTSVGVSVFTLTALSADRYRAIVN 147

Query: 408 PLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYP 467
           P+    SG+        T L    IW+ ++L A+P    S V   +  + +N+ F +C P
Sbjct: 148 PMDMQTSGV-----LLWTSLKAVGIWVVSVLLAVPEAVFSEVA--RIGSLDNSSFTACIP 200

Query: 468 FPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQT-RQI 526
           +P  D    +P+   ++ FL+Y+ +PL+II+ +Y  +A++LI S  N+PGE    T +Q+
Sbjct: 201 YPQTDEL--HPKIHSVLIFLVYFLIPLVIISIYYYHIAKTLIKSAHNLPGEYNEHTKKQM 258

Query: 527 RARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSRN 586
             RK++AK VL FV  F  C+FP H  +L+   N    D      H++  + +++++  N
Sbjct: 259 ETRKRLAKIVLVFVGCFVFCWFPNHVLYLYRSFNYKEIDP--SLGHMIVTLVARVLSFSN 316

Query: 587 ANARRF 592
           +    F
Sbjct: 317 SCVNPF 322

Receptor for neuromedin-B.

Mus musculus (taxid: 10090)

>sp|P32247|BRS3_HUMAN Bombesin receptor subtype-3 OS=Homo sapiens GN=BRS3 PE=1 SV=1

 Score =  192 bits (488), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 118/284 (41%), Positives = 165/284 (58%), Gaps = 17/284 (5%)

Query: 287 NTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLA 346
           N   S D  P  E L    + I +A I  VG+LGN  L+ +F   KSM+ VPNI+I SLA
Sbjct: 33  NKGWSGDNSPGIEALCA--IYITYAVIISVGILGNAILIKVFFKTKSMQTVPNIFITSLA 90

Query: 347 LGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIV 406
            GDLL++LTCVP  +T Y  E W +G   CK+    +  SVGVSVFTLT LSADR+ A+V
Sbjct: 91  FGDLLLLLTCVPVDATHYLAEGWLFGRIGCKVLSFIRLTSVGVSVFTLTILSADRYKAVV 150

Query: 407 DPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCY 466
            PL +  S      A   T +    +WI +++ A+P    S V  F+D  N N  FESC 
Sbjct: 151 KPLERQPSN-----AILKTCVKAGCVWIVSMIFALPEAIFSNVYTFRDP-NKNMTFESCT 204

Query: 467 PFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTR-Q 525
            +P          +++   FL++Y +PL II+ +YSL+AR+L  ST N+P E Q   R Q
Sbjct: 205 SYPVSKKLLQEIHSLLC--FLVFYIIPLSIISVYYSLIARTLYKSTLNIPTEEQSHARKQ 262

Query: 526 IRARKKVAKTVLTFVVVFAMCFFPQHFFFLWF------YINPTA 563
           I +RK++A+TVL  V +FA+C+ P H  +L+       Y++P+A
Sbjct: 263 IESRKRIARTVLVLVALFALCWLPNHLLYLYHSFTSQTYVDPSA 306

Role in sperm cell division, maturation, or function. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Homo sapiens (taxid: 9606)

>sp|P28336|NMBR_HUMAN Neuromedin-B receptor OS=Homo sapiens GN=NMBR PE=1 SV=2

 Score =  191 bits (486), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 178/301 (59%), Gaps = 17/301 (5%)

Query: 293 DFKPYSERLETYLV-----PIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLAL 347
           DF P S+   T LV     P ++  I  VG+LGN  LV IFI + +MR+VPNI+I +LA 
Sbjct: 28  DFLPASDGTTTELVIRCVIPSLYLLIITVGLLGNIMLVKIFITNSAMRSVPNIFISNLAA 87

Query: 348 GDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVD 407
           GDLL++LTCVP  ++ Y F+ W +G+  CK+    +  SVGVSVFTLTALSADR+ AIV+
Sbjct: 88  GDLLLLLTCVPVDASRYFFDEWMFGKVGCKLIPVIQLTSVGVSVFTLTALSADRYRAIVN 147

Query: 408 PLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYP 467
           P+    SG     A   T +    IW+ ++L A+P    S V   +  + +N+ F +C P
Sbjct: 148 PMDMQTSG-----ALLRTCVKAMGIWVVSVLLAVPEAVFSEVA--RISSLDNSSFTACIP 200

Query: 468 FPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQT-RQI 526
           +P  D    +P+   ++ FL+Y+ +PL II+ +Y  +A++LI S  N+PGE    T +Q+
Sbjct: 201 YPQTDEL--HPKIHSVLIFLVYFLIPLAIISIYYYHIAKTLIKSAHNLPGEYNEHTKKQM 258

Query: 527 RARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSRN 586
             RK++AK VL FV  F  C+FP H  +++   N    D      H++  + +++++  N
Sbjct: 259 ETRKRLAKIVLVFVGCFIFCWFPNHILYMYRSFNYNEIDP--SLGHMIVTLVARVLSFGN 316

Query: 587 A 587
           +
Sbjct: 317 S 317

Receptor for neuromedin-B.

Homo sapiens (taxid: 9606)

>sp|O54798|BRS3_MOUSE Bombesin receptor subtype-3 OS=Mus musculus GN=Brs3 PE=2 SV=1

 Score =  189 bits (481), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 113/272 (41%), Positives = 161/272 (59%), Gaps = 9/272 (3%)

Query: 308 IVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFE 367
           I +A I  VG+LGN  L+ +F   KSM+ VPNI+I SLA GDLL++LTCVP  +T Y  E
Sbjct: 52  ITYAGIISVGILGNAILIKVFFKTKSMQTVPNIFITSLAFGDLLLLLTCVPVDATHYLAE 111

Query: 368 SWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTIL 427
            W +G+  CK+    +  SVGVSVFTLT LSADR+ A+V PL +         A   T  
Sbjct: 112 GWLFGKVGCKVLSFIRLTSVGVSVFTLTILSADRYKAVVKPLER-----QPPNAILKTCA 166

Query: 428 IVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFL 487
               IWI +++ A+P    S V  F+D  N N  FESC  +P  +       +++   FL
Sbjct: 167 KAGGIWIVSMIFALPEAIFSNVYTFQDP-NRNVTFESCNSYPISERLLQEIHSLLC--FL 223

Query: 488 IYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTR-QIRARKKVAKTVLTFVVVFAMC 546
           ++Y +PL II+ +YSL+AR+L  ST N+P E Q   R QI +RK++AKTVL  V +FA+C
Sbjct: 224 VFYIIPLSIISVYYSLIARTLYKSTLNIPTEEQSHARKQIESRKRIAKTVLVLVALFALC 283

Query: 547 FFPQHFFFLWFYINPTAPDDYNDFWHILRIMS 578
           + P H  +L+      +  +++D   ++ I S
Sbjct: 284 WLPNHLLYLYHSFTYESYANHSDVPFVIIIFS 315

Role in sperm cell division, maturation, or function. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Mus musculus (taxid: 10090)

>sp|O97967|BRS3_SHEEP Bombesin receptor subtype-3 OS=Ovis aries GN=BRS3 PE=2 SV=1

 Score =  187 bits (474), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/301 (38%), Positives = 169/301 (56%), Gaps = 15/301 (4%)

Query: 261 RRAPQNDPVTMATEITKITNGDQIIINTSL----STDFKPYSERLETYLVPIVFAFIFVV 316
           +R PQ+   T+ +      +   ++ N S     + D  P  E L    + I +A I  V
Sbjct: 3   QRQPQSPNQTLISTTNDTESSSSVVPNDSTNKRRTGDNSPGIEAL--CAIYITYAVIISV 60

Query: 317 GVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESIC 376
           G+LGN  L+ +F   KSM+ VPNI+I SLA GDLL++LTCVP   T Y  E W +G   C
Sbjct: 61  GILGNAILIKVFFKTKSMQTVPNIFITSLAFGDLLLLLTCVPVDVTHYLAEGWLFGRIGC 120

Query: 377 KISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFA 436
           K+    +  SVGVSVFTLT LSADR+ A+V PL +       K   +        IWI +
Sbjct: 121 KVLSFIRLTSVGVSVFTLTILSADRYKAVVKPLERQPPNAILKTCAK-----AGCIWIMS 175

Query: 437 ILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLI 496
           ++ A+P    S V  F+D   N T F++C  +P  +       +++   FL++Y +PL I
Sbjct: 176 MIIALPEAIFSNVYTFQDPDKNVT-FKACASYPVSERLLQEIHSLLC--FLVFYIIPLSI 232

Query: 497 IACFYSLMARSLILSTKNMPGELQGQTR-QIRARKKVAKTVLTFVVVFAMCFFPQHFFFL 555
           I+ +YSL+AR+L  ST N+P E Q   R QI +RK++AKTVL  V +FA+C+ P H  +L
Sbjct: 233 ISVYYSLIARTLYKSTLNIPTEEQRHARKQIESRKRIAKTVLVLVALFALCWLPNHLLYL 292

Query: 556 W 556
           +
Sbjct: 293 Y 293

Role in sperm cell division, maturation, or function. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Ovis aries (taxid: 9940)

>sp|P21729|GRPR_MOUSE Gastrin-releasing peptide receptor OS=Mus musculus GN=Grpr PE=1 SV=2

 Score =  178 bits (451), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/254 (43%), Positives = 155/254 (61%), Gaps = 9/254 (3%)

Query: 304 YLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTV 363
           Y++P V+  I V+G++GN TL+ IF   KSMRNVPN++I SLALGDLL+++TC P  ++ 
Sbjct: 42  YVIPAVYGLIIVIGLIGNITLIKIFCTVKSMRNVPNLFISSLALGDLLLLVTCAPVDASK 101

Query: 364 YTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATR 423
           Y  + W +G   CK+    +  SVGVSVFTLTALSADR+ AIV P+      I    A  
Sbjct: 102 YLADRWLFGRIGCKLIPFIQLTSVGVSVFTLTALSADRYKAIVRPM-----DIQASHALM 156

Query: 424 CTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVII 483
              L  A IWI ++L AIP    S +  F     N T F SC P+P  +    +P+   +
Sbjct: 157 KICLKAALIWIVSMLLAIPEAVFSDLHPFHVKDTNQT-FISCAPYPHSNEL--HPKIHSM 213

Query: 484 MRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQT-RQIRARKKVAKTVLTFVVV 542
             FL++Y +PL II+ +Y  +AR+LI S  N+P E      +QI +RK++AKTVL FV +
Sbjct: 214 ASFLVFYVIPLAIISVYYYFIARNLIQSAYNLPVEGNIHVKKQIESRKRLAKTVLVFVGL 273

Query: 543 FAMCFFPQHFFFLW 556
           FA C+ P H  +L+
Sbjct: 274 FAFCWLPNHVIYLY 287

Receptor for gastrin releasing peptide (GRP). This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	647
350405974	463	PREDICTED: gastrin-releasing peptide rec	0.510	0.712	0.572	1e-107
340723941	463	PREDICTED: bombesin receptor subtype-3-l	0.443	0.619	0.648	1e-106
345481755	432	PREDICTED: bombesin receptor subtype-3-l	0.442	0.662	0.644	1e-106
193636558	407	PREDICTED: bombesin receptor subtype-3-l	0.446	0.710	0.657	1e-106
383857703	740	PREDICTED: uncharacterized protein LOC10	0.472	0.413	0.581	1e-104
328779585	468	PREDICTED: gastrin-releasing peptide rec	0.472	0.653	0.590	1e-101
270012689	666	hypothetical protein TcasGA2_TC005327 [T	0.476	0.462	0.587	1e-99
197209896	325	neuropeptide receptor A15 [Bombyx mori]	0.435	0.867	0.624	2e-99
91089693	412	PREDICTED: similar to bombesin receptor	0.476	0.747	0.587	2e-99
328779587	470	PREDICTED: gastrin-releasing peptide rec	0.472	0.651	0.586	3e-99

>gi|350405974|ref|XP_003487616.1| PREDICTED: gastrin-releasing peptide receptor-like [Bombus impatiens]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/351 (57%), Positives = 249/351 (70%), Gaps = 21/351 (5%)

Query: 228 ARRFHRPSTYSSTRKWDSMSTTHNPNNLQMNTFRRAPQNDPVTMATEITKITNGDQIIIN 287
           AR    PS+   +  W    TT   +N+  +TF  A      T  T I K TN ++    
Sbjct: 2   ARTTVSPSSLLFSTSW----TTPTVSNVLKDTFGIAS----TTHYTSIEKQTNAEE---- 49

Query: 288 TSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLAL 347
                 + PY +R ETY VPIVF  I V+G+ GNG L L  + H +MRNVPNIY+ SLAL
Sbjct: 50  -----KYTPYEDRPETYFVPIVFLLILVIGLTGNGVLALTILRHSNMRNVPNIYVFSLAL 104

Query: 348 GDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVD 407
           GDLLVILTCVPFT TVY  +SWP+G  +CK+SE  KDIS+GVSVFTLTALSADRFFAIVD
Sbjct: 105 GDLLVILTCVPFTFTVYIVDSWPFGLVLCKVSECAKDISIGVSVFTLTALSADRFFAIVD 164

Query: 408 PLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYP 467
           P+RKLH+   G+RATR T+++ + IW+ AI+CAIPS + SY+R FK   N N  F++CYP
Sbjct: 165 PMRKLHASGTGRRATRFTVIVASLIWVLAIMCAIPS-SFSYIRVFK--VNTNVTFQACYP 221

Query: 468 FPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIR 527
           +P   G PNYP+T+++ RF IYYAVPL IIA FY LMAR LI ST+N+PGE+Q Q +Q++
Sbjct: 222 YPAEFG-PNYPKTILVCRFFIYYAVPLSIIAFFYILMARHLIHSTRNIPGEMQCQLKQVK 280

Query: 528 ARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMS 578
           ARKKVAK V+ FV+VFA+CFFPQH F LWFYI+PTA  DYN FWH  RI+S
Sbjct: 281 ARKKVAKMVMAFVIVFAVCFFPQHVFMLWFYIHPTAQQDYNTFWHYFRILS 331

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723941|ref|XP_003400345.1| PREDICTED: bombesin receptor subtype-3-like [Bombus terrestris]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/293 (64%), Positives = 229/293 (78%), Gaps = 6/293 (2%)

Query: 286 INTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSL 345
           INT +   + PY +R ETY VPIVF  I V+G+ GNG L LI + H +MRNVPNIY+ SL
Sbjct: 45  INTEV--KYTPYEDRPETYFVPIVFLLILVIGLTGNGVLALIILRHSNMRNVPNIYVFSL 102

Query: 346 ALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAI 405
           ALGDLLVILTCVPFT TVY  +SWP+G  +CKISE  KDIS+GVSVFTLTALSADRFFAI
Sbjct: 103 ALGDLLVILTCVPFTFTVYIVDSWPFGLVLCKISECAKDISIGVSVFTLTALSADRFFAI 162

Query: 406 VDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESC 465
           VDP+RKLH+   G+RATR T+++ + IW+ AI+CAIPS + SY+R FK   N N  F++C
Sbjct: 163 VDPMRKLHASGTGRRATRFTVIVASLIWVLAIICAIPS-SFSYIRVFK--VNANVTFQAC 219

Query: 466 YPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQ 525
           YP+P   G PNYP+ V+I RF IYYAVPL IIA FY LMAR LI ST+N+PGE+Q Q +Q
Sbjct: 220 YPYPAEFG-PNYPKMVLICRFFIYYAVPLGIIAFFYILMARHLIHSTRNIPGEMQCQLKQ 278

Query: 526 IRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMS 578
           ++ARKKVAK V+ FV+VFA+CFFPQH F LWFYI+PTA  DYN FWH  RI+S
Sbjct: 279 VKARKKVAKMVMAFVIVFAVCFFPQHVFMLWFYIHPTAQQDYNTFWHYFRILS 331

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481755|ref|XP_001604352.2| PREDICTED: bombesin receptor subtype-3-like [Nasonia vitripennis]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/290 (64%), Positives = 226/290 (77%), Gaps = 4/290 (1%)

Query: 289 SLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALG 348
           S   ++ PY +R ETY+VPIVFA I VVGV+GNG L+L    H +MRNVPN Y+LSLA+G
Sbjct: 35  SAEENYVPYGDRPETYIVPIVFACILVVGVMGNGLLMLTICRHSNMRNVPNTYVLSLAIG 94

Query: 349 DLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDP 408
           DLLVILTCVPFT TVY  +SWP+G  +CK+SE  KDIS+GVSVFTLTALSADRFFAIVDP
Sbjct: 95  DLLVILTCVPFTFTVYVLDSWPFGLMLCKVSECAKDISIGVSVFTLTALSADRFFAIVDP 154

Query: 409 LRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPF 468
           +RKLH+  GGKRATR T+++   IW+ AI CAIP+ + SY+R F+   N N  F +CYPF
Sbjct: 155 MRKLHATGGGKRATRFTMVVATLIWLLAIFCAIPA-SFSYIRVFR--VNKNVTFLTCYPF 211

Query: 469 PPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRA 528
           P   G PNYPRTV+I RF I+Y  PL IIA FY LMAR L+ ST+N+PGE+QGQ +QI+A
Sbjct: 212 PEEFG-PNYPRTVLICRFCIFYVFPLSIIAVFYMLMARHLVQSTRNIPGEMQGQVKQIKA 270

Query: 529 RKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMS 578
           RKKVAK V+ FV VFA+CFFPQH F LWFY++P+A DDYN FWH  RI+ 
Sbjct: 271 RKKVAKMVMAFVAVFAICFFPQHVFMLWFYLHPSAQDDYNAFWHYFRILG 320

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193636558|ref|XP_001948574.1| PREDICTED: bombesin receptor subtype-3-like isoform 1 [Acyrthosiphon pisum] gi|328711400|ref|XP_003244528.1| PREDICTED: bombesin receptor subtype-3-like isoform 2 [Acyrthosiphon pisum]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/292 (65%), Positives = 239/292 (81%), Gaps = 3/292 (1%)

Query: 287 NTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLA 346
           N++L+ D   YS R ETY+VP++FAFIF VG +GNG+LVLIFI H+ M NVPNIYILSLA
Sbjct: 13  NSTLAVDEYDYSARPETYIVPVLFAFIFFVGTIGNGSLVLIFIRHRHMINVPNIYILSLA 72

Query: 347 LGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIV 406
           LGDLLV+L+C+PFTSTVYT  SWP+G +ICK+SE+TKDIS+GV+VFTLTALSADRFFAIV
Sbjct: 73  LGDLLVLLSCIPFTSTVYTVPSWPFGLTICKVSETTKDISIGVTVFTLTALSADRFFAIV 132

Query: 407 DPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCY 466
           DP+RKLH+ +GG+RAT+ T+ +   IW  AI CA+P+ T SYVR F+ D  N TLFE CY
Sbjct: 133 DPMRKLHASVGGRRATKFTVTVAVTIWCLAIACAVPAATNSYVRQFRQD--NVTLFEVCY 190

Query: 467 PFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQI 526
           P+    G P YPR ++++RFL+YY VPL  IACFY++MAR LI ST+NMPGE+QGQ RQ+
Sbjct: 191 PYAEELG-PAYPRIIVVIRFLVYYVVPLSAIACFYTMMARHLINSTRNMPGEVQGQMRQV 249

Query: 527 RARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMS 578
           RARKKVAKTV+ FV+VFA+CF P H F LWFY+NP + D+YN FWH+LRI+ 
Sbjct: 250 RARKKVAKTVMAFVLVFAVCFLPYHMFNLWFYLNPKSQDEYNLFWHVLRIVG 301

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857703|ref|XP_003704343.1| PREDICTED: uncharacterized protein LOC100878340 [Megachile rotundata]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/313 (58%), Positives = 235/313 (75%), Gaps = 7/313 (2%)

Query: 269 VTMATEITKITNGDQIIINTSL---STDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLV 325
           ++  T  T I +   +I  T L     ++ PY +R ETY+VP+VF  IF++G+ GNG LV
Sbjct: 29  ISSTTHYTSIGSVYDVIDQTMLMDEEENYTPYGDRPETYIVPVVFLLIFLIGLTGNGVLV 88

Query: 326 LIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDI 385
           L  + H++MRNVPNIY+ SLALGDLLVI+TCVPFT TVY  +SWP+G  +C++SE  KDI
Sbjct: 89  LTILRHRNMRNVPNIYVFSLALGDLLVIVTCVPFTITVYILDSWPFGLQLCRVSECAKDI 148

Query: 386 SVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMT 445
           S+GVSVFTLTALSADR+FAIVDP+RKLH+   G RATR  +++   IW+ AI+CAIP+ +
Sbjct: 149 SIGVSVFTLTALSADRYFAIVDPMRKLHATGTGSRATRFAVIVAVMIWLLAIVCAIPA-S 207

Query: 446 LSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMA 505
            SYVR F+ ++N N  F +CYPFP   G P YP+ ++I RF I YA+PL +I  FY+LMA
Sbjct: 208 FSYVREFRVNSNMN--FSACYPFPERFG-PKYPQIIVICRFFINYAIPLTVIGVFYALMA 264

Query: 506 RSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPD 565
           R L+ ST+N+PGE+QGQ RQI+ARKKVAK V+ FV+VFA+CFF  H F LWFYI+PTA  
Sbjct: 265 RHLMRSTRNIPGEIQGQVRQIKARKKVAKMVMAFVIVFAVCFFFHHVFMLWFYIHPTAQK 324

Query: 566 DYNDFWHILRIMS 578
           DYNDFWH  RI+S
Sbjct: 325 DYNDFWHYFRIIS 337

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779585|ref|XP_003249676.1| PREDICTED: gastrin-releasing peptide receptor-like isoform 1 [Apis mellifera]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/315 (59%), Positives = 236/315 (74%), Gaps = 9/315 (2%)

Query: 269 VTMATEITKITNGDQIIINT-----SLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGT 323
           VT A   T     DQ+++       ++   + PY +R ETY+VPIVF  I ++G+ GNG 
Sbjct: 31  VTSAIASTADYAIDQMMLKEDEEQLNMGEKYVPYEDRPETYIVPIVFLLILLIGLTGNGV 90

Query: 324 LVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTK 383
           L L  + H +MRNVPNIY+ SLALGDLLVI+TCVPFT TVY  +SWP+G  +CK+SE  K
Sbjct: 91  LALTILRHSNMRNVPNIYVFSLALGDLLVIMTCVPFTFTVYILDSWPFGLVLCKVSECAK 150

Query: 384 DISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPS 443
           DIS+GVSVFTLTALSADRFFAIVDP+RK H+   GKRATR T+++ A IW+ AI+CAIP 
Sbjct: 151 DISIGVSVFTLTALSADRFFAIVDPMRKFHTTGTGKRATRFTVIVAALIWLLAIMCAIPG 210

Query: 444 MTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSL 503
            + SY+R FK   N++  F +CYP+PP  G PNYP+T+++ RF IYYAVPL+IIA FY L
Sbjct: 211 -SFSYIRVFK--VNSSISFRACYPYPPEFG-PNYPKTILVCRFFIYYAVPLIIIAFFYIL 266

Query: 504 MARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTA 563
           MAR L+ ST+N+PGE+Q Q +Q++ARKKVAK V+ FV+VFA+CFFPQH F LWFYI+PTA
Sbjct: 267 MARHLMRSTRNIPGEMQCQVKQVKARKKVAKMVMAFVIVFAVCFFPQHVFMLWFYIHPTA 326

Query: 564 PDDYNDFWHILRIMS 578
             DYN FWH  RI+ 
Sbjct: 327 QQDYNVFWHYFRILG 341

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012689|gb|EFA09137.1| hypothetical protein TcasGA2_TC005327 [Tribolium castaneum]

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 185/315 (58%), Positives = 229/315 (72%), Gaps = 7/315 (2%)

Query: 264 PQNDPVTMATEITKITNGDQIIINTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGT 323
           PQND +     I  I N     + T    D+ PYS+R ETY+VP++F  IFVVGVLGNGT
Sbjct: 6   PQNDTIMFNYSILDIGNDTHKNV-TGTPHDYIPYSKRPETYVVPVLFFVIFVVGVLGNGT 64

Query: 324 LVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTK 383
           LV+IF+ H++MRNVPN YILSLAL DLLVI+T VPFTS +YT ESWP+GE ICK+SE+ K
Sbjct: 65  LVVIFLRHRTMRNVPNTYILSLALADLLVIVTSVPFTSIIYTLESWPWGELICKVSETAK 124

Query: 384 DISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPS 443
           DIS+GVSVFTLTALSADRFFAIVDPL+K H+  GG++ATR T+    +IWI AILCAIP+
Sbjct: 125 DISIGVSVFTLTALSADRFFAIVDPLKKFHTTSGGRKATRITLCTAISIWILAILCAIPA 184

Query: 444 MTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSL 503
              S+++  +        F  CYPFP       YP+ +I++RFLI Y +PL IIA FY  
Sbjct: 185 AIGSHLKDIEGQ------FIVCYPFPTHWLNHKYPQVMILLRFLILYVIPLTIIAIFYLN 238

Query: 504 MARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTA 563
           MA  LI+ST+N+PGE+QG  RQIRARKKVA TVL FV+VFA+CF P H F L+FY +P +
Sbjct: 239 MANHLIVSTRNVPGEMQGTQRQIRARKKVAITVLIFVLVFALCFLPSHIFMLFFYFDPNS 298

Query: 564 PDDYNDFWHILRIMS 578
            + YN FWH LRI+ 
Sbjct: 299 SEHYNAFWHYLRIIG 313

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|197209896|ref|NP_001127712.1| neuropeptide receptor A15 [Bombyx mori] gi|195947000|dbj|BAG68414.1| neuropeptide receptor A15 [Bombyx mori]

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 178/285 (62%), Positives = 220/285 (77%), Gaps = 3/285 (1%)

Query: 294 FKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVI 353
           ++PY ER ETY+VPI+FA IFV+GV+GNGTLV +F+ HK+MRNVPN YILSLAL DLLVI
Sbjct: 16  YQPYYERPETYIVPILFALIFVIGVVGNGTLVAVFVRHKAMRNVPNTYILSLALADLLVI 75

Query: 354 LTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLH 413
           +TCVPFTS VYT ESWP+G ++C++SE+ KD+S+GVSVFTLTALSADR+FAIVDPLRKLH
Sbjct: 76  ITCVPFTSIVYTVESWPWGRTVCQVSEAAKDVSIGVSVFTLTALSADRYFAIVDPLRKLH 135

Query: 414 SGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDG 473
           +    KRATR TI     IWI A L A P+   SY+R F    N  T F  CYP+P   G
Sbjct: 136 ATGSSKRATRLTIATAIGIWILAGLLATPAFIGSYLRPFV--VNPTTQFLVCYPYPQEWG 193

Query: 474 YPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVA 533
             +Y + V+++RFL+YY++PL +IA FY LMA  L+LST+NMPGE+QG  RQ+RAR+KVA
Sbjct: 194 -EHYAQIVVMVRFLLYYSLPLAVIALFYVLMAWHLVLSTQNMPGEMQGTQRQMRARRKVA 252

Query: 534 KTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMS 578
            TVL FV+VFA CF P H F +WFY  PTA +DYN +WH LRI+ 
Sbjct: 253 VTVLAFVLVFAACFLPSHVFMMWFYFCPTAENDYNGWWHGLRIVG 297

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089693|ref|XP_974772.1| PREDICTED: similar to bombesin receptor subtype-3 [Tribolium castaneum]

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 185/315 (58%), Positives = 229/315 (72%), Gaps = 7/315 (2%)

Query: 264 PQNDPVTMATEITKITNGDQIIINTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGT 323
           PQND +     I  I N     + T    D+ PYS+R ETY+VP++F  IFVVGVLGNGT
Sbjct: 6   PQNDTIMFNYSILDIGNDTHKNV-TGTPHDYIPYSKRPETYVVPVLFFVIFVVGVLGNGT 64

Query: 324 LVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTK 383
           LV+IF+ H++MRNVPN YILSLAL DLLVI+T VPFTS +YT ESWP+GE ICK+SE+ K
Sbjct: 65  LVVIFLRHRTMRNVPNTYILSLALADLLVIVTSVPFTSIIYTLESWPWGELICKVSETAK 124

Query: 384 DISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPS 443
           DIS+GVSVFTLTALSADRFFAIVDPL+K H+  GG++ATR T+    +IWI AILCAIP+
Sbjct: 125 DISIGVSVFTLTALSADRFFAIVDPLKKFHTTSGGRKATRITLCTAISIWILAILCAIPA 184

Query: 444 MTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSL 503
              S+++  +        F  CYPFP       YP+ +I++RFLI Y +PL IIA FY  
Sbjct: 185 AIGSHLKDIEGQ------FIVCYPFPTHWLNHKYPQVMILLRFLILYVIPLTIIAIFYLN 238

Query: 504 MARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTA 563
           MA  LI+ST+N+PGE+QG  RQIRARKKVA TVL FV+VFA+CF P H F L+FY +P +
Sbjct: 239 MANHLIVSTRNVPGEMQGTQRQIRARKKVAITVLIFVLVFALCFLPSHIFMLFFYFDPNS 298

Query: 564 PDDYNDFWHILRIMS 578
            + YN FWH LRI+ 
Sbjct: 299 SEHYNAFWHYLRIIG 313

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779587|ref|XP_395101.4| PREDICTED: gastrin-releasing peptide receptor-like isoform 2 [Apis mellifera]

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 186/317 (58%), Positives = 236/317 (74%), Gaps = 11/317 (3%)

Query: 269 VTMATEITKITNGDQIIINT-----SLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGT 323
           VT A   T     DQ+++       ++   + PY +R ETY+VPIVF  I ++G+ GNG 
Sbjct: 31  VTSAIASTADYAIDQMMLKEDEEQLNMGEKYVPYEDRPETYIVPIVFLLILLIGLTGNGV 90

Query: 324 LVLIFINHKSMRNVPNIYILSLALGDLL--VILTCVPFTSTVYTFESWPYGESICKISES 381
           L L  + H +MRNVPNIY+ SLALGDLL  VI+TCVPFT TVY  +SWP+G  +CK+SE 
Sbjct: 91  LALTILRHSNMRNVPNIYVFSLALGDLLARVIMTCVPFTFTVYILDSWPFGLVLCKVSEC 150

Query: 382 TKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAI 441
            KDIS+GVSVFTLTALSADRFFAIVDP+RK H+   GKRATR T+++ A IW+ AI+CAI
Sbjct: 151 AKDISIGVSVFTLTALSADRFFAIVDPMRKFHTTGTGKRATRFTVIVAALIWLLAIMCAI 210

Query: 442 PSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFY 501
           P  + SY+R FK   N++  F +CYP+PP  G PNYP+T+++ RF IYYAVPL+IIA FY
Sbjct: 211 PG-SFSYIRVFK--VNSSISFRACYPYPPEFG-PNYPKTILVCRFFIYYAVPLIIIAFFY 266

Query: 502 SLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINP 561
            LMAR L+ ST+N+PGE+Q Q +Q++ARKKVAK V+ FV+VFA+CFFPQH F LWFYI+P
Sbjct: 267 ILMARHLMRSTRNIPGEMQCQVKQVKARKKVAKMVMAFVIVFAVCFFPQHVFMLWFYIHP 326

Query: 562 TAPDDYNDFWHILRIMS 578
           TA  DYN FWH  RI+ 
Sbjct: 327 TAQQDYNVFWHYFRILG 343

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	647
FB|FBgn0050106	499	CCHa1r "CCHamide-1 receptor" [	0.435	0.565	0.543	2.2e-82
FB|FBgn0033058	489	CCHa2r "CCHamide-2 receptor" [	0.432	0.572	0.462	2.3e-64
UNIPROTKB|E2R9E7	390	NMBR "Uncharacterized protein"	0.428	0.710	0.363	3.7e-48
RGD|3181	390	Nmbr "neuromedin B receptor" [	0.491	0.815	0.332	7.9e-46
UNIPROTKB|E1BRP1	388	NMBR "Uncharacterized protein"	0.480	0.801	0.357	1e-45
RGD|628645	399	Brs3 "bombesin-like receptor 3	0.491	0.796	0.363	1e-45
MGI|MGI:1100525	390	Nmbr "neuromedin B receptor" [	0.446	0.741	0.359	1.6e-45
UNIPROTKB|Q802E6	396	BRS3.5 "Uncharacterized protei	0.483	0.790	0.375	2.7e-45
UNIPROTKB|P32247	399	BRS3 "Bombesin receptor subtyp	0.451	0.731	0.374	2.7e-45
UNIPROTKB|F1NHS9	387	GRPR "Uncharacterized protein"	0.431	0.720	0.382	4.4e-45

FB|FBgn0050106 CCHa1r "CCHamide-1 receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 156/287 (54%), Positives = 204/287 (71%)

Query:   292 TDFKPYSERLETYLVPIVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLL 351
             T + PY  R ETY+VPI+FA IF            +F++ + MRNVPN YILSLAL DLL
Sbjct:    70 TPYVPYGRRPETYIVPILFALIFVVGVLGNGTLIVVFLSVRQMRNVPNTYILSLALADLL 129

Query:   352 VILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRK 411
             VI+T VP  STVYT E WPYG  +C +SE  KD+S+GVSVFTLTALS DR+FAIVDPLRK
Sbjct:   130 VIITTVPLASTVYTVEYWPYGSFLCSLSEFMKDVSIGVSVFTLTALSGDRYFAIVDPLRK 189

Query:   412 LHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPI 471
              H+  GG+RATR T+    +IW+ AILC +P++  S ++      N  ++   CYP+P  
Sbjct:   190 FHAHGGGRRATRMTLATAVSIWLLAILCGLPALIGSNLKHL--GINEKSIV-ICYPYPEE 246

Query:   472 DGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKK 531
              G  NY ++++++ FL+YYA+PL++IA FY L+A  L+ S  ++PGE+QG  RQ+RAR+K
Sbjct:   247 WGI-NYAKSMVLLHFLVYYAIPLVVIAVFYVLIALHLMYSA-SVPGEIQGAVRQVRARRK 304

Query:   532 VAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMS 578
             VA TVL FVV+F +CF P H FFLWFY  PTA DDYN FWH+LRI++
Sbjct:   305 VAVTVLAFVVIFGICFLPYHVFFLWFYFWPTAQDDYNAFWHVLRIVA 351

GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA

GO:0016021 "integral to membrane" evidence=ISS;IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0008261 "allatostatin receptor activity" evidence=IDA

GO:0031989 "bombesin receptor signaling pathway" evidence=IEA

GO:0004946 "bombesin receptor activity" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IDA

FB|FBgn0033058 CCHa2r "CCHamide-2 receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 137/296 (46%), Positives = 187/296 (63%)

Query:   294 FKPYSERLETYLVPIVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVI 353
             + P  +R ETY+V +++  IF            IF  H+SMRN+PN YILSLAL DLLVI
Sbjct:    60 YVPVLDRPETYIVTVLYTLIFIVGVLGNGTLVIIFFRHRSMRNIPNTYILSLALADLLVI 119

Query:   354 LTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLH 413
             L CVP  + VYT ESWP+  ++C+ISE  KDIS+GVSVFTLTALS +R+ AIV+PLRKL 
Sbjct:   120 LVCVPVATIVYTQESWPFERNMCRISEFFKDISIGVSVFTLTALSGERYCAIVNPLRKLQ 179

Query:   414 SGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT-NNNTLFESCYPFPPID 472
             +          T+     IWI AIL  +PS+  S ++++   T   N   E C PF    
Sbjct:   180 T-------KPLTVFTAVMIWILAILLGMPSVLFSDIKSYPVFTATGNMTIEVCSPFRD-- 230

Query:   473 GYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQG-QTR-QIRARK 530
               P Y + ++  + L+YY +PL II   Y +MA+ L +S +NMPGE Q  Q+R Q RAR 
Sbjct:   231 --PEYAKFMVAGKALVYYLLPLSIIGALYIMMAKRLHMSARNMPGEQQSMQSRTQARARL 288

Query:   531 KVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMS--SKIINS 584
              VA+ V+ FVVVF +CFFP H F LW++  PTA +D+++FW++LRI+   +  +NS
Sbjct:   289 HVARMVVAFVVVFFICFFPYHVFELWYHFYPTAEEDFDEFWNVLRIVGFCTSFLNS 344

GO:0004930 "G-protein coupled receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS;IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA

GO:0004946 "bombesin receptor activity" evidence=IEA

GO:0031989 "bombesin receptor signaling pathway" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IDA

UNIPROTKB|E2R9E7 NMBR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 480 (174.0 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
 Identities = 105/289 (36%), Positives = 162/289 (56%)

Query:   305 LVPIVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVY 364
             ++P ++  I             IFI   +MR+VPNI+I +LA GDLL++LTCVP  ++ Y
Sbjct:    45 VIPSLYLLIIAVGLLGNIMLVKIFITTSAMRSVPNIFISNLAAGDLLLLLTCVPVDASRY 104

Query:   365 TFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRC 424
              F+ W +G+  CK+    +  SVGVSVFTLTALSADR+ AIV+P+    SG     A  C
Sbjct:   105 FFDEWMFGKVGCKLIPVIQLTSVGVSVFTLTALSADRYRAIVNPMDMQTSG-----AVLC 159

Query:   425 TILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIM 484
             T      IW+ ++L A+P    S V+      N N  F +C P+P  D    +P+   ++
Sbjct:   160 TCAKAVGIWVLSVLLAVPEAVFSEVKRIDSLENGN--FTACIPYPQTDEL--HPKIHSVL 215

Query:   485 RFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTR-QIRARKKVAKTVLTFVVVF 543
              FL+Y+ +PL II+ +Y  +A++LI S  N+PGE    T+ Q+  RK++AK VL FV  F
Sbjct:   216 IFLVYFLIPLAIISVYYYHIAKALIKSAHNLPGEYNEHTKKQMETRKRLAKIVLVFVGCF 275

Query:   544 AMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSRNANARRF 592
               C+FP H  +++   N    D      H++  + +++++  N+    F
Sbjct:   276 VFCWFPNHILYMYRSFNYNEIDP--SLGHMIVTLVARVLSFCNSCVNPF 322

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004946 "bombesin receptor activity" evidence=IEA

RGD|3181 Nmbr "neuromedin B receptor" [Rattus norvegicus (taxid:10116)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 110/331 (33%), Positives = 185/331 (55%)

Query:   264 PQNDP-VTMATEITKITNGDQIIINTSLSTDFKPYSERLETYLVPIVFAFIFXXXXXXXX 322
             P++ P +++ TE ++     ++  N  L       +E +   ++P ++  I         
Sbjct:     3 PRSLPNLSLPTEASESELEPEVWENDFLPDSDGTTAELVIRCVIPSLYLIIISVGLLGNI 62

Query:   323 XXXXIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISEST 382
                 IF+ + +MR+VPNI+I +LA GDLL++LTCVP  ++ Y F+ W +G+  CK+  + 
Sbjct:    63 MLVKIFLTNSTMRSVPNIFISNLAAGDLLLLLTCVPVDASRYFFDEWVFGKLGCKLIPAI 122

Query:   383 KDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIP 442
             +  SVGVSVFTLTALSADR+ AIV+P+    SG+        T L    IW+ ++L A+P
Sbjct:   123 QLTSVGVSVFTLTALSADRYRAIVNPMDMQTSGV-----VLWTSLKAVGIWVVSVLLAVP 177

Query:   443 SMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 502
                 S V      +++N+ F +C P+P  D    +P+   ++ FL+Y+ +PL+II+ +Y 
Sbjct:   178 EAVFSEVARI--GSSDNSSFTACIPYPQTDEL--HPKIHSVLIFLVYFLIPLVIISIYYY 233

Query:   503 LMARSLILSTKNMPGELQGQTR-QIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINP 561
              +A++LI S  N+PGE    T+ Q+  RK++AK VL FV  F  C+FP H  +L+   N 
Sbjct:   234 HIAKTLIRSAHNLPGEYNEHTKKQMETRKRLAKIVLVFVGCFVFCWFPNHILYLYRSFNY 293

Query:   562 TAPDDYNDFWHILRIMSSKIINSRNANARRF 592
                D      H++  + +++++  N+    F
Sbjct:   294 KEIDP--SLGHMIVTLVARVLSFSNSCVNPF 322

GO:0004946 "bombesin receptor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0007218 "neuropeptide signaling pathway" evidence=IPI

GO:0008188 "neuropeptide receptor activity" evidence=IPI

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BRP1 NMBR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 117/327 (35%), Positives = 185/327 (56%)

Query:   271 MATEITKIT---NGD-QIIINTSLSTDFKPYSERLETYLVPIVFAFIFXXXXXXXXXXXX 326
             + +E+T ++   NG  Q++  T+L       +      ++P ++  I             
Sbjct:     5 LLSELTALSFGGNGSVQLVPETTLLPPAWGMAMFTVRCVIPSLYLLIITVGLLGNVTLMK 64

Query:   327 IFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDIS 386
             IFI++ +MR+VPNI+I SLA GDLL+++TCVP  ++ Y  E W +GE  CK+  + +  S
Sbjct:    65 IFISNSAMRSVPNIFISSLAAGDLLLLVTCVPVDASRYFSEEWLFGEVGCKLIPAIQLTS 124

Query:   387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
             VGVSVFTLTALSADR+ AIV P+      I    A   T     AIWI +IL ++P    
Sbjct:   125 VGVSVFTLTALSADRYKAIVKPM-----DIQTSSAVLRTCAKAIAIWIISILLSVPEAVF 179

Query:   447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMAR 506
             S + A  +DT+N T F +C P+P  D    +P+   ++ FL+Y+ +PL II+ +Y  +A+
Sbjct:   180 SEL-AHINDTDNAT-FTACIPYPMTDDM--HPKIHSVLIFLVYFLIPLAIISIYYYHIAK 235

Query:   507 SLILSTKNMPGE-LQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPD 565
             SLI S  N+PGE  +   RQ+  RK++AK VL FV  FA+C+FP H  +++   N    D
Sbjct:   236 SLIRSAHNIPGENSEHSKRQMETRKRLAKIVLVFVGFFAICWFPNHVLYMYRSFNYNEID 295

Query:   566 DYNDFWHILRIMSSKIINSRNANARRF 592
               +   H++  + +++++  N+    F
Sbjct:   296 --SSIGHMVVTLVARVLSFCNSCVNPF 320

GO:0004946 "bombesin receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

RGD|628645 Brs3 "bombesin-like receptor 3" [Rattus norvegicus (taxid:10116)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 122/336 (36%), Positives = 178/336 (52%)

Query:   265 QNDPVTMATEITKITNGDQIIINTSLSTDFKPY------SERLETYL-VPIVFAFIFXXX 317
             Q  P +    +  ITN D    ++++S D  P       S  +E    + I +A I    
Sbjct:     3 QRQPQSPNQTLISITN-DTETSSSAVSNDTTPKGWTGDNSPGIEALCAIYITYAVIISVG 61

Query:   318 XXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICK 377
                      +F   KSM+ VPNI+I SLA GDLL++LTCVP  +T Y  E W +G+  CK
Sbjct:    62 ILGNAILIKVFFKTKSMQTVPNIFITSLAFGDLLLLLTCVPVDATHYLAEGWLFGKVGCK 121

Query:   378 ISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAI 437
             +    +  SVGVSVFTLT LSADR+ A+V PL +  S      A   T      IWI A+
Sbjct:   122 VLSFIRLTSVGVSVFTLTILSADRYKAVVKPLERQPSN-----AILKTCAKAGGIWIMAM 176

Query:   438 LCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLII 497
             + A+P    S V  F+D  N N  FESC  +P  +       +++   FL++Y +PL II
Sbjct:   177 IFALPEAIFSNVYTFQDP-NRNVTFESCNSYPISERLLQEIHSLLC--FLVFYIIPLSII 233

Query:   498 ACFYSLMARSLILSTKNMPGELQGQTR-QIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW 556
             + +YSL+AR+L  ST N+P E Q   R QI +RK++AKTVL  V +FA+C+ P H  +L+
Sbjct:   234 SVYYSLIARTLYKSTLNIPTEEQSHARKQIESRKRIAKTVLVLVALFALCWLPNHLLYLY 293

Query:   557 FYINPTAPDDYNDFWHILRIMSSKIINSRNANARRF 592
                   +  + +D   ++ I S +++   N+    F
Sbjct:   294 HSFTYESYAEPSDVPFVVTIFS-RVLAFSNSCVNPF 328

GO:0004946 "bombesin receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043005 "neuron projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

MGI|MGI:1100525 Nmbr "neuromedin B receptor" [Mus musculus (taxid:10090)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 110/306 (35%), Positives = 171/306 (55%)

Query:   293 DFKPYSERLETYLV-----PIVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLAL 347
             DF P S+     LV     P ++  I             IF+ + +MRNVPNI+I +LA 
Sbjct:    28 DFLPDSDGTTAELVIRCVIPSLYLIIISVGLLGNIMLVKIFLTNSAMRNVPNIFISNLAA 87

Query:   348 GDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVD 407
             GDLL++LTCVP  ++ Y F+ W +G+  CK+  + +  SVGVSVFTLTALSADR+ AIV+
Sbjct:    88 GDLLLLLTCVPVDASRYFFDEWVFGKLGCKLIPAIQLTSVGVSVFTLTALSADRYRAIVN 147

Query:   408 PLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYP 467
             P+    SG+        T L    IW+ ++L A+P    S V      + +N+ F +C P
Sbjct:   148 PMDMQTSGV-----LLWTSLKAVGIWVVSVLLAVPEAVFSEVARI--GSLDNSSFTACIP 200

Query:   468 FPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTR-QI 526
             +P  D    +P+   ++ FL+Y+ +PL+II+ +Y  +A++LI S  N+PGE    T+ Q+
Sbjct:   201 YPQTDEL--HPKIHSVLIFLVYFLIPLVIISIYYYHIAKTLIKSAHNLPGEYNEHTKKQM 258

Query:   527 RARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSRN 586
               RK++AK VL FV  F  C+FP H  +L+   N    D      H++  + +++++  N
Sbjct:   259 ETRKRLAKIVLVFVGCFVFCWFPNHVLYLYRSFNYKEIDP--SLGHMIVTLVARVLSFSN 316

Query:   587 ANARRF 592
             +    F
Sbjct:   317 SCVNPF 322

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004946 "bombesin receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=ISO

GO:0008188 "neuropeptide receptor activity" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031989 "bombesin receptor signaling pathway" evidence=IEA

UNIPROTKB|Q802E6 BRS3.5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 122/325 (37%), Positives = 172/325 (52%)

Query:   264 PQNDPVTMATEITKITNG-DQIIINTSLSTDFKPYSERLETYLVPIVFAFIFXXXXXXXX 322
             P N  +  AT  T++ +  D    N   + D  P  E L T  + + +A I         
Sbjct:     8 PSNQTLCAATNGTELKSILDNETTNEKWTEDSFPGLEILCT--IYVTYAVIISVGLLGNA 65

Query:   323 XXXXIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISEST 382
                 +F   KSM+ VPNI+I SLA GDLL++LTCVP  +T Y  ++W +G   CK+    
Sbjct:    66 ILIKVFFKIKSMQTVPNIFITSLAFGDLLLLLTCVPVDATRYIVDTWIFGRIGCKLLSFI 125

Query:   383 KDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIP 442
             +  SVGVSVFTLT LSADR+ AIV PL    S    K  T C       +WI +++ AIP
Sbjct:   126 QLTSVGVSVFTLTVLSADRYRAIVKPLELQTSDALLK--TCCK---AGCVWIVSMVFAIP 180

Query:   443 SMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 502
                 S + +F +   N T FE+C P+P  +       +++   FL++Y VPL +I+ +Y 
Sbjct:   181 EAVFSDLYSFSNPEKNVT-FEACAPYPVSEKILQEVHSLVC--FLVFYIVPLAVISVYYF 237

Query:   503 LMARSLILSTKNMPGELQGQTR-QIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINP 561
             L+AR+L  ST NMP E  G  R QI +RK+VAKTVL  V +FA C+ P H  +L+     
Sbjct:   238 LIARTLYKSTFNMPAEEHGHARKQIESRKRVAKTVLVLVALFAFCWLPNHILYLYRSFTY 297

Query:   562 TAPDDYNDFWHILRIMSSKIINSRN 586
                 D + F  I+ I S  +  S +
Sbjct:   298 HTSVDASTFHLIVTIFSRALAFSNS 322

GO:0004946 "bombesin receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P32247 BRS3 "Bombesin receptor subtype-3" [Homo sapiens (taxid:9606)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 118/315 (37%), Positives = 169/315 (53%)

Query:   261 RRAPQNDPVTMATEITKITNGDQIII-----NTSLSTDFKPYSERLETYLVPIVFAFIFX 315
             +R P +   T+ + IT  T     ++     N   S D  P  E L    + I +A I  
Sbjct:     3 QRQPHSPNQTLIS-ITNDTESSSSVVSNDNTNKGWSGDNSPGIEAL--CAIYITYAVIIS 59

Query:   316 XXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESI 375
                        +F   KSM+ VPNI+I SLA GDLL++LTCVP  +T Y  E W +G   
Sbjct:    60 VGILGNAILIKVFFKTKSMQTVPNIFITSLAFGDLLLLLTCVPVDATHYLAEGWLFGRIG 119

Query:   376 CKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIF 435
             CK+    +  SVGVSVFTLT LSADR+ A+V PL +  S      A   T +    +WI 
Sbjct:   120 CKVLSFIRLTSVGVSVFTLTILSADRYKAVVKPLERQPSN-----AILKTCVKAGCVWIV 174

Query:   436 AILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLL 495
             +++ A+P    S V  F+D  N N  FESC  +P          +++   FL++Y +PL 
Sbjct:   175 SMIFALPEAIFSNVYTFRDP-NKNMTFESCTSYPVSKKLLQEIHSLLC--FLVFYIIPLS 231

Query:   496 IIACFYSLMARSLILSTKNMPGELQGQTR-QIRARKKVAKTVLTFVVVFAMCFFPQHFFF 554
             II+ +YSL+AR+L  ST N+P E Q   R QI +RK++A+TVL  V +FA+C+ P H  +
Sbjct:   232 IISVYYSLIARTLYKSTLNIPTEEQSHARKQIESRKRIARTVLVLVALFALCWLPNHLLY 291

Query:   555 LWF------YINPTA 563
             L+       Y++P+A
Sbjct:   292 LYHSFTSQTYVDPSA 306

GO:0004946 "bombesin receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0008217 "regulation of blood pressure" evidence=TAS

GO:0008343 "adult feeding behavior" evidence=TAS

UNIPROTKB|F1NHS9 GRPR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 111/290 (38%), Positives = 160/290 (55%)

Query:   304 YLVPIVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTV 363
             Y +P ++  I             IF   KSMRNVPN++I SLALGDLL+++TCVP  ++ 
Sbjct:    43 YAIPTIYGIIILIGLIGNITLIKIFCTVKSMRNVPNLFISSLALGDLLLLVTCVPVDASR 102

Query:   364 YTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATR 423
             Y  + W +G   CK+    +  SVGVSVFTLTALSADR+ AIV P+      I    A  
Sbjct:   103 YLADEWLFGRIGCKLIPFIQLTSVGVSVFTLTALSADRYKAIVRPME-----IQASHALM 157

Query:   424 CTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVII 483
                +  A IWI ++L AIP    S +  F D   N T F SC P+P  DG   +P+   +
Sbjct:   158 KICVRAAIIWIASMLLAIPEAVFSDLHPFHDKGTNKT-FISCAPYPHSDGL--HPKIHSM 214

Query:   484 MRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTR-QIRARKKVAKTVLTFVVV 542
               FLI+Y +PL +I+ +Y  +A++LI S  N+P E     R QI +RK++A+TVL FV +
Sbjct:   215 ASFLIFYIIPLSVISVYYYFIAKNLIRSAYNIPVEGNVHVRKQIESRKRLARTVLVFVCL 274

Query:   543 FAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSRNANARRF 592
             FA C+ P H  +L+   + +  D      H +  + ++I+   N+    F
Sbjct:   275 FAFCWLPTHIIYLYRSYHYSEVD--TSVLHFIASICARILAFTNSCVNPF 322

GO:0004946 "bombesin receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	647
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	1e-39
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	7e-24
PHA03087	335	PHA03087, PHA03087, G protein-coupled chemokine re	5e-12
PHA02638	417	PHA02638, PHA02638, CC chemokine receptor-like pro	2e-10
PHA02834	323	PHA02834, PHA02834, chemokine receptor-like protei	3e-08
PHA03235	409	PHA03235, PHA03235, DNA packaging protein UL33; Pr	4e-04

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score =  145 bits (369), Expect = 1e-39
 Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 14/249 (5%)

Query: 326 LIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDI 385
           L+ +  K +R   NI++L+LA+ DLL +LT  P+         WP+G+++CK+      +
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60

Query: 386 SVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMT 445
           +   S+  LTA+S DR+ AIV PLR         R  R   +++  +W+ A+L ++P + 
Sbjct: 61  NGYASILLLTAISIDRYLAIVHPLRYRR-----IRTPRRAKVLILVVWVLALLLSLPPLL 115

Query: 446 LSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMA 505
            S++R     T       +C    P +   +  R+  ++  L+ + +PLL+I   Y+L+ 
Sbjct: 116 FSWLR-----TVEEGNVTTCLIDFPEE---STKRSYTLLSTLLGFVLPLLVILVCYTLIL 167

Query: 506 RSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPD 565
           R+L    ++         R     +K AK +L  VVVF +C+ P H   L   + P +  
Sbjct: 168 RTLRKRARSGA-SQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIW 226

Query: 566 DYNDFWHIL 574
                  ++
Sbjct: 227 RLLPTALLI 235

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score =  100 bits (252), Expect = 7e-24
 Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 17/195 (8%)

Query: 1   LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
           +S DR+ AIV PLR         R  R   +++  +W+ A+L ++P +  S++R     T
Sbjct: 72  ISIDRYLAIVHPLRYRR-----IRTPRRAKVLILVVWVLALLLSLPPLLFSWLR-----T 121

Query: 61  NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
                  +C    P +   +  R+  ++  L+ + +PLL+I   Y+L+ R+L    ++  
Sbjct: 122 VEEGNVTTCLIDFPEE---STKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGA 178

Query: 121 GELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRI 180
                  R     +K AK +L  VVVF +C+ P H   L   + P +            +
Sbjct: 179 -SQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLPTAL---L 234

Query: 181 VGFCLGFINSCINPI 195
           +   L ++NSC+NPI
Sbjct: 235 ITLWLAYVNSCLNPI 249

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional

 Score = 67.5 bits (165), Expect = 5e-12
 Identities = 62/244 (25%), Positives = 110/244 (45%), Gaps = 27/244 (11%)

Query: 308 IVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFE 367
           +V++ IF  G++GN  +V+  +    ++   +IY+L+LA+ DLL ++T +PF    Y   
Sbjct: 45  VVYSTIFFFGLVGN-IIVIYVLTKTKIKTPMDIYLLNLAVSDLLFVMT-LPFQIYYYILF 102

Query: 368 SWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTIL 427
            W +GE  CKI      I    S+  +T +S DR+ AIV P++            +   +
Sbjct: 103 QWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNK-----INTVKYGYI 157

Query: 428 IVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFL 487
           +   IWI +I+   P + +   +  KD     TL   C  F   +   N+   +     +
Sbjct: 158 VSLVIWIISIIETTPILFVYTTK--KDH---ETLI--CCMFYN-NKTMNWKLFINFEINI 209

Query: 488 IYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCF 547
           I   +PL I+   YS +  +L    K+         +  +A     K VL  V++F + +
Sbjct: 210 IGMLIPLTILLYCYSKILITLKGINKS--------KKNKKA----IKLVLIIVILFVIFW 257

Query: 548 FPQH 551
            P +
Sbjct: 258 LPFN 261

Length = 335

>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional

 Score = 62.7 bits (152), Expect = 2e-10
 Identities = 37/142 (26%), Positives = 76/142 (53%), Gaps = 10/142 (7%)

Query: 303 TYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTST 362
           +  + I +  IF++G+ GN  +++I    K ++ + +IYI +LA+ DL+ +   + F   
Sbjct: 98  SEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFV---IDFPFI 153

Query: 363 VYT-FESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRA 421
           +Y  F+ W +G+ +CK+  ++  I    ++F +T +S DR+FAI+ P+          R 
Sbjct: 154 IYNEFDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPI-----SFQKYRT 208

Query: 422 TRCTILIVAAIWIFAILCAIPS 443
               I++    WI +++   P+
Sbjct: 209 FNIGIILCIISWILSLIITSPA 230

Length = 417

>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 37/157 (23%), Positives = 83/157 (52%), Gaps = 10/157 (6%)

Query: 293 DFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLV 352
           DF+  +  +  Y V + +  +F+ G++GN  ++ + I  + M  V ++Y+ ++A+ DL++
Sbjct: 19  DFEMVNSDV-NYFVIVFYILLFIFGLIGNVLVIAVLIVKRFMFVV-DVYLFNIAMSDLML 76

Query: 353 ILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKL 412
           + +  PF         W +GE +CK+      +    ++F +T +S DR+  +V+  +  
Sbjct: 77  VFS-FPFI-IHNDLNEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIK 134

Query: 413 HSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYV 449
           +  I        ++L+  A W+ +++ ++P+M L YV
Sbjct: 135 NKSIS------LSVLLSVAAWVCSVILSMPAMVLYYV 165

Length = 323

>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 54/246 (21%), Positives = 98/246 (39%), Gaps = 37/246 (15%)

Query: 311 AFIFVVGVLGNGTLVLIFI------NHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVY 364
            FI ++ +   G L LI +      N     + P +Y+ +L L +LL +   +PF     
Sbjct: 36  TFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVFV-LPFI---- 90

Query: 365 TFESWPY-GESI--CKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRA 421
              +      S+  CK +      S  V   T+  ++ADR+  I    R          A
Sbjct: 91  MLSNQGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRA------RSSA 144

Query: 422 TRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTV 481
            R T  I+   W  +++C+ P+   + V A  D       +E+C  +   D       T 
Sbjct: 145 YRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTF 204

Query: 482 IIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVV 541
            ++  L++   P++++  FY+   R+L                +  + KK ++T LTFV 
Sbjct: 205 KVLLTLVWGIAPVVMMTWFYTFFYRTL----------------KRASYKKRSRT-LTFVC 247

Query: 542 VFAMCF 547
           +  + F
Sbjct: 248 ILLLSF 253

Length = 409

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	647
KOG4219|consensus	423		100.0
PHA03234	338	DNA packaging protein UL33; Provisional	100.0
PHA03235	409	DNA packaging protein UL33; Provisional	100.0
KOG4220|consensus	503		100.0
PHA02834	323	chemokine receptor-like protein; Provisional	100.0
PHA02638	417	CC chemokine receptor-like protein; Provisional	100.0
PHA03087	335	G protein-coupled chemokine receptor-like protein;	100.0
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.97
KOG4219|consensus	423		99.96
PHA03235	409	DNA packaging protein UL33; Provisional	99.94
KOG2087|consensus	363		99.93
PHA03234	338	DNA packaging protein UL33; Provisional	99.92
PHA02834	323	chemokine receptor-like protein; Provisional	99.91
KOG4220|consensus	503		99.91
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.9
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.88
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.82
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	99.74
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	99.7
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	99.54
KOG2087|consensus	363		99.52
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	99.5
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	99.37
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	99.3
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	99.2
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	99.05
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	98.97
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	98.84
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	98.81
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	98.65
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	98.64
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	98.55
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	98.37
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	98.22
PF10326	307	7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept	98.15
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	98.08
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	98.07
PF04789	305	DUF621: Protein of unknown function (DUF621); Inte	98.04
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	98.03
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	98.01
KOG4193|consensus	610		97.83
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	97.77
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	97.77
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	97.66
PF10319	310	7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept	97.1
PF02117	328	7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept	97.05
PF03125	365	Sre: C. elegans Sre G protein-coupled chemorecepto	96.88
KOG4564|consensus	473		96.83
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	96.6
PF10318	302	7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept	96.59
PF10322	307	7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept	96.56
KOG4193|consensus	610		96.56
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	96.51
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	96.45
PF10326	307	7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept	96.44
PF01534	328	Frizzled: Frizzled/Smoothened family membrane regi	96.29
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	96.19
PF10318	302	7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept	95.99
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	95.79
PF03125	365	Sre: C. elegans Sre G protein-coupled chemorecepto	95.66
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	95.48
KOG4564|consensus	473		95.02
PF03383	153	Serpentine_r_xa: Caenorhabditis serpentine recepto	94.78
PF02076	283	STE3: Pheromone A receptor; InterPro: IPR001499 G-	94.65
PF11970	76	Git3_C: G protein-coupled glucose receptor regulat	93.24
PF11970	76	Git3_C: G protein-coupled glucose receptor regulat	91.85
PF04789	305	DUF621: Protein of unknown function (DUF621); Inte	90.24
PF13853	144	7tm_4: Olfactory receptor	88.42
PF06681	226	DUF1182: Protein of unknown function (DUF1182); In	87.54
PF10319	310	7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept	87.26
PF02175	236	7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept	86.77
PF13853	144	7tm_4: Olfactory receptor	85.74
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	81.66

>KOG4219|consensus

Probab=100.00  E-value=9.4e-43  Score=327.54  Aligned_cols=301  Identities=24%  Similarity=0.364  Sum_probs=246.4

Q ss_pred             chhhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccc
Q psy9472         298 SERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICK  377 (647)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~  377 (647)
                      .+.+...+..+++.++.+++++||.+|++++..+|++|+.+|+|++|||+||+++++++.++........+|.+|.+.|+
T Consensus        30 lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~  109 (423)
T KOG4219|consen   30 LPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCR  109 (423)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceee
Confidence            34567788999999999999999999999999999999999999999999999999999999888888889999999999


Q ss_pred             cchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCC
Q psy9472         378 ISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTN  457 (647)
Q Consensus       378 ~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~  457 (647)
                      +..++..+...+|++++++||+|||.||.+|++       .+.+++..+.+++++|++++++++|..+..........+ 
T Consensus       110 f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~-------~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d-  181 (423)
T KOG4219|consen  110 FVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQ-------PRPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYD-  181 (423)
T ss_pred             eccccchhhhhHhHHHHHHHHHHHHHHHhhhcc-------cCCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccC-
Confidence            999999999999999999999999999999999       458999999999999999999999998887776655432 


Q ss_pred             CCceeeeeecCCCCC-----CCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhh
Q psy9472         458 NNTLFESCYPFPPID-----GYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKV  532 (647)
Q Consensus       458 ~~~~~~~C~~~~~~~-----~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~  532 (647)
                       +.....|...++..     ......+.|...+.++.+++|++++...|..|.+++|..+....++. ++..+.+.++|+
T Consensus       182 -~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d-~~~~~~kak~K~  259 (423)
T KOG4219|consen  182 -GESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQD-RKHEQLKAKKKV  259 (423)
T ss_pred             -CcceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhc-hhhHHHHHHHHH
Confidence             23334555433333     11111233777888899999999999999999999998764333322 345566888999


Q ss_pred             hHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCccccccccccCCC
Q psy9472         533 AKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSVS  608 (647)
Q Consensus       533 ~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~~  608 (647)
                      .||++++++.|.+||+||++..++....++..+.......++....+.+.|+| ||+||.|-++-+|...++.++++
T Consensus       260 vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~c  336 (423)
T KOG4219|consen  260 VKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWC  336 (423)
T ss_pred             HHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhhee
Confidence            99999999999999999999999988766655544444444444444449999 99998887777666666665555

>PHA03234 DNA packaging protein UL33; Provisional

Probab=100.00  E-value=3.3e-37  Score=306.19  Aligned_cols=271  Identities=15%  Similarity=0.183  Sum_probs=195.8

Q ss_pred             hhhhhHhHHHHHHHHHHHHHHhhHHhhhhh--hhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecccccccccc
Q psy9472         299 ERLETYLVPIVFAFIFVVGVLGNGTLVLIF--INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESIC  376 (647)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i--~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C  376 (647)
                      .+....+..++|.+++++|++||+++++++  .+++++|+++|+|++|||+||++.++. .|+.... ..++|.+|+..|
T Consensus        28 ~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~-lp~~~~~-~~~~w~fG~~lC  105 (338)
T PHA03234         28 LKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLC-VFFLTLN-REALFNFNQAFC  105 (338)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH-HHHHHHH-HhCCccCchhHH
Confidence            345677889999999999999999999955  455666899999999999999999664 5554432 345799999999


Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCC
Q psy9472         377 KISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT  456 (647)
Q Consensus       377 ~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~  456 (647)
                      ++..++......+|++++++||+|||++|++|.+     ++.  ++++....++++|+.+++.++|.++........   
T Consensus       106 k~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~-----~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~---  175 (338)
T PHA03234        106 QCVLFIYHASCSYSICMLAIIATIRYKTLHRRKK-----NDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKK---  175 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhh-----hhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecC---
Confidence            9999999999999999999999999999999998     332  233444556667999999999987654322211   


Q ss_pred             CCCceeeeeecCCCCCCCCCcchhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhh
Q psy9472         457 NNNTLFESCYPFPPIDGYPNYPRTVI---IMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVA  533 (647)
Q Consensus       457 ~~~~~~~~C~~~~~~~~~~~~~~~~~---~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~  533 (647)
                         .....|....+.+  ..+ ..+.   ...+.+.+++|+++|+++|.+|.++++++.             .++++|++
T Consensus       176 ---~~~~~C~~~~~~~--~~~-~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~-------------~~~~~k~~  236 (338)
T PHA03234        176 ---GNYGKCNIHISSK--KAY-DLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT-------------EKKHKKTL  236 (338)
T ss_pred             ---CCCCcCcccCCcc--hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------hhhhhhhh
Confidence               1113576543321  111 1111   122334578999999999999999997631             14467899


Q ss_pred             HHHHHHHHHHhhccccHHHHHHHHHhCC---CCCCCc----hhHHHHHHHHhhhhhccC-chhHHhhcCCccccccc
Q psy9472         534 KTVLTFVVVFAMCFFPQHFFFLWFYINP---TAPDDY----NDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTR  602 (647)
Q Consensus       534 ~~~~~i~~~f~~~w~P~~i~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~  602 (647)
                      |++++++++|++||+||++..+++.+..   ......    .........+++  +||| ||+||.|.++.+|...+
T Consensus       237 k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~--~nsclNPiIY~f~~~~FR~~~~  311 (338)
T PHA03234        237 FFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPE--IHCFSNPLVYAFTGGDFRLRFT  311 (338)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHH--hhhhhhHHHHHHhhHHHHHHHH
Confidence            9999999999999999999887654421   111111    112334445555  9999 99998876666554443

>PHA03235 DNA packaging protein UL33; Provisional

Probab=100.00  E-value=7.4e-36  Score=302.93  Aligned_cols=278  Identities=18%  Similarity=0.236  Sum_probs=195.3

Q ss_pred             hhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhc-CCC-CCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccc
Q psy9472         300 RLETYLVPIVFAFIFVVGVLGNGTLVLIFINH-KSM-RNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICK  377 (647)
Q Consensus       300 ~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~-~~l-~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~  377 (647)
                      +....+..+++.+++++|++||+++++++.++ +.. ++..++|+.|||++|++. ++.+|+.+... ...|..|+..|+
T Consensus        29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~Ck  106 (409)
T PHA03235         29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGCK  106 (409)
T ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCeeh
Confidence            44567889999999999999999999986543 322 356789999999999997 56788765321 122334578999


Q ss_pred             cchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCC
Q psy9472         378 ISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTN  457 (647)
Q Consensus       378 ~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~  457 (647)
                      +..++...+..+|++++++||+|||++|++|.+     + ...+++++..+++++|++++++++|..++...........
T Consensus       107 ~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~-----~-~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~  180 (409)
T PHA03235        107 FASLLYYASCTVGFATVALIAADRYRVIHQRTR-----A-RSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDP  180 (409)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHeechhh-----c-cCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCc
Confidence            999999999999999999999999999999986     3 2346888899999999999999999765432211111111


Q ss_pred             CCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHH
Q psy9472         458 NNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVL  537 (647)
Q Consensus       458 ~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~  537 (647)
                      .......|......+........|.+..+++.|++|+++|+++|.+|+++++++.+             ++++|..++++
T Consensus       181 ~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~-------------~~~~k~~~~v~  247 (409)
T PHA03235        181 EAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY-------------KKRSRTLTFVC  247 (409)
T ss_pred             CCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------hcchhhhhhHH
Confidence            11123468654332211111223455566778999999999999999999987532             22457788999


Q ss_pred             HHHHHHhhccccHHHHHHHHHhCCC---CCCCc----hhHHHHHHHHhhhhhccC-chhHHhhcCCccccc
Q psy9472         538 TFVVVFAMCFFPQHFFFLWFYINPT---APDDY----NDFWHILRIMSSKIINSR-NANARRFHRPSTYSS  600 (647)
Q Consensus       538 ~i~~~f~~~w~P~~i~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~  600 (647)
                      +++++|++||+||+++.++..+...   .....    .....+...+++  +||| ||+||.+.++.+|..
T Consensus       248 iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~--~ns~lNPiIY~~~~~~FRk~  316 (409)
T PHA03235        248 ILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPN--LHCLLNPILYAFLGNDFLKR  316 (409)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHH--HHHhHhHHHHHHhhHHHHHH
Confidence            9999999999999999887654321   11111    112233344444  9999 999976654443333

>KOG4220|consensus

Probab=100.00  E-value=1.3e-36  Score=284.62  Aligned_cols=294  Identities=19%  Similarity=0.304  Sum_probs=239.0

Q ss_pred             hhhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecccccccccccc
Q psy9472         299 ERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKI  378 (647)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~  378 (647)
                      +..+..++.++...++++.++||++|++.+.-++.|++..|+|+.+||+||++.|.+.+|++......+.|+.|..+|.+
T Consensus        26 ~~~q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~Cdl  105 (503)
T KOG4220|consen   26 ETWQVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDL  105 (503)
T ss_pred             cceEEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHH
Confidence            34555677888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCC
Q psy9472         379 SESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNN  458 (647)
Q Consensus       379 ~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  458 (647)
                      ...+-++.+.+|++++.+|++|||+.|.+|+.     |+.++|.+|+..+|+++|++|+++-.|.+.+|.+......   
T Consensus       106 WLalDYvaSNASVmNLLiISFDRYFsVTrPLt-----YrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrT---  177 (503)
T KOG4220|consen  106 WLALDYVASNASVMNLLIISFDRYFSVTRPLT-----YRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRT---  177 (503)
T ss_pred             HHHHHHHhhhhhhhhhheeeeecceeeccccc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeee---
Confidence            99999999999999999999999999999999     8899999999999999999999999999888776553322   


Q ss_pred             CceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-------------------
Q psy9472         459 NTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGEL-------------------  519 (647)
Q Consensus       459 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~-------------------  519 (647)
                       -....|....-..+      .+.....+..|-+|..+|+++|.+|++..+++.++....+                   
T Consensus       178 -v~~~eC~iQFlsnp------~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~  250 (503)
T KOG4220|consen  178 -VPDGECYIQFLSNP------AITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGD  250 (503)
T ss_pred             -cCCCceEEEeecCc------eeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCccccccc
Confidence             12235654333322      2233445677889999999999999999987765100000                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy9472         520 --------------------------------------------------------------------------------  519 (647)
Q Consensus       520 --------------------------------------------------------------------------------  519 (647)
                                                                                                      
T Consensus       251 ~~~s~r~~p~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~  330 (503)
T KOG4220|consen  251 SKSSGRSSPSEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQR  330 (503)
T ss_pred             ccCCCCCCCccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcC
Confidence                                                                                            


Q ss_pred             ------------------------------------------------cc-------------------h-----hhhhH
Q psy9472         520 ------------------------------------------------QG-------------------Q-----TRQIR  527 (647)
Q Consensus       520 ------------------------------------------------~~-------------------~-----~~~~~  527 (647)
                                                                      ..                   +     +....
T Consensus       331 ~~D~~~~~~~i~i~~~~~~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~  410 (503)
T KOG4220|consen  331 KVDEEGLNTLIQIPTDQMLPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLV  410 (503)
T ss_pred             CCCccccccccccccccCCCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhH
Confidence                                                            00                   0     00114


Q ss_pred             hhhhhhHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCccccccccccC
Q psy9472         528 ARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDS  606 (647)
Q Consensus       528 ~~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~  606 (647)
                      +|+|++|++..|++.|++||+||.++.++..|+.....  ...|.+..++.+  +||- ||++|.+=++-||+..++...
T Consensus       411 rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~CiP--~tlW~~gYwLCY--INSTiNP~CYALCNatFrkTfk~lL~  486 (503)
T KOG4220|consen  411 RERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKNCIP--ETLWTFGYWLCY--INSTINPLCYALCNATFRKTFKRLLL  486 (503)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccceeeeehHhhcccccc--hhHhhhhhheee--ecccccHHHHHHHhHHHHHHHHHhhe
Confidence            78999999999999999999999999999999865543  335566666777  9999 999998877777777777665


Q ss_pred             CCCCC
Q psy9472         607 VSTTH  611 (647)
Q Consensus       607 ~~~~~  611 (647)
                      |....
T Consensus       487 Cr~~~  491 (503)
T KOG4220|consen  487 CRWKK  491 (503)
T ss_pred             eeecc
Confidence            55443

>PHA02834 chemokine receptor-like protein; Provisional

Probab=100.00  E-value=3.5e-35  Score=292.55  Aligned_cols=272  Identities=18%  Similarity=0.365  Sum_probs=201.6

Q ss_pred             hHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchhh
Q psy9472         303 TYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISEST  382 (647)
Q Consensus       303 ~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~  382 (647)
                      ..+..+++.+++++|++||+++++++.++++ +++.|+|++|||+||++. ++.+|+.+... .++|.+|+..|++..++
T Consensus        28 ~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~~C~~~~~~  104 (323)
T PHA02834         28 NYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEFMCKLVLGV  104 (323)
T ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcchHHHhHHHH
Confidence            4577899999999999999999999887665 457899999999999987 56788765433 35799999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCcee
Q psy9472         383 KDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLF  462 (647)
Q Consensus       383 ~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (647)
                      ...+..+|++++++||+|||++|++|++     ++. .+.+++...++++|+++++.++|+..+......       ...
T Consensus       105 ~~~~~~~Si~tL~~IsidRY~aI~~P~~-----~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~-------~~~  171 (323)
T PHA02834        105 YFVGFFSNMFFVTLISIDRYILVVNATK-----IKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVDNT-------DNL  171 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhheeCchh-----ccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhccC-------CCc
Confidence            9999999999999999999999999998     433 345677778889999999999988765332111       112


Q ss_pred             eeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHH
Q psy9472         463 ESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVV  542 (647)
Q Consensus       463 ~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~  542 (647)
                      ..|........ ..+...+.....++.+++|+++|+++|.+|+++++++++             ++++|..|++++++++
T Consensus       172 ~~C~~~~~~~~-~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~-------------~~~~k~~k~~~~vv~~  237 (323)
T PHA02834        172 KQCIFNDYHEN-FSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN-------------KNKTRSIKIILTVVTF  237 (323)
T ss_pred             eEEeccCCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------cccceEEeehhHHHHH
Confidence            35753221111 111122333345778999999999999999999987532             2345888999999999


Q ss_pred             HhhccccHHHHHHHHHhCCCCCC----C-chh---HHHHHHHHhhhhhccC-chhHHhhcCCccccccccccC
Q psy9472         543 FAMCFFPQHFFFLWFYINPTAPD----D-YND---FWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDS  606 (647)
Q Consensus       543 f~~~w~P~~i~~~~~~~~~~~~~----~-~~~---~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~  606 (647)
                      |++||+|+++..++..+......    . ...   .......+++  .||| ||+||.+.++.+|...++.++
T Consensus       238 F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--~ns~iNPiIY~~~~~~fR~~~~~~~~  308 (323)
T PHA02834        238 TVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISF--VHCCVNPIIYAFVGKNFKKVFKNMFC  308 (323)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHH--hhccccHHHHHHhcHHHHHHHHHHHH
Confidence            99999999999887665322111    1 111   1223344555  9999 999999888777777776553

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=100.00  E-value=2.7e-34  Score=293.19  Aligned_cols=283  Identities=19%  Similarity=0.330  Sum_probs=209.6

Q ss_pred             hhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccc
Q psy9472         300 RLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKIS  379 (647)
Q Consensus       300 ~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~  379 (647)
                      .....+...++.+++++|++||+++++++.+ |++|++++++++|||++|++. ++.+|+.+... .++|.+|+..|++.
T Consensus        95 ~~~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~-~l~lPf~i~~~-~~~W~fg~~~Ck~~  171 (417)
T PHA02638         95 PSISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIF-VIDFPFIIYNE-FDQWIFGDFMCKVI  171 (417)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHH-HHHHHHHHHHH-hccccccccchhhH
Confidence            3355678889999999999999999987755 778899999999999999998 45678766443 46899999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeec---CC
Q psy9472         380 ESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKD---DT  456 (647)
Q Consensus       380 ~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~---~~  456 (647)
                      .++...+..+++++++++++|||++|++|.+     ++...++++....++++|++++++++|++++........   +.
T Consensus       172 ~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~-----~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~  246 (417)
T PHA02638        172 SASYYIGFFSNMFLITLMSIDRYFAILYPIS-----FQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDS  246 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccC
Confidence            9999999999999999999999999999999     666677788888899999999999999987654332111   11


Q ss_pred             CCCceeeeeecCCCCCCC--CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhH
Q psy9472         457 NNNTLFESCYPFPPIDGY--PNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAK  534 (647)
Q Consensus       457 ~~~~~~~~C~~~~~~~~~--~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~  534 (647)
                      +.......|....+....  ..+...+.....++.+++|+++|++||.+|++++++.++             ++++|.+|
T Consensus       247 ~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~-------------~~k~k~~r  313 (417)
T PHA02638        247 NETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK-------------SKKTKSII  313 (417)
T ss_pred             CCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------cccchhhh
Confidence            111112467543322210  111123334445677899999999999999999976421             23467789


Q ss_pred             HHHHHHHHHhhccccHHHHHHHHHhCCC---------CCCCc---hhHHHHHHHHhhhhhccC-chhHHhhcCCcccccc
Q psy9472         535 TVLTFVVVFAMCFFPQHFFFLWFYINPT---------APDDY---NDFWHILRIMSSKIINSR-NANARRFHRPSTYSST  601 (647)
Q Consensus       535 ~~~~i~~~f~~~w~P~~i~~~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~  601 (647)
                      +++.++++|++||+|+.++.++..+...         .....   .....+...+++  +|+| ||+||.|..+-+|+..
T Consensus       314 li~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~--~~sclNPiIY~f~~~~FR~~l  391 (417)
T PHA02638        314 IVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISL--THCCINPLIYTLIGENFRMHL  391 (417)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHH--HHHhhhHHHHHHhCHHHHHHH
Confidence            9999999999999999999888765421         11111   112233344444  9999 9999888777776666


Q ss_pred             cccc
Q psy9472         602 RKWD  605 (647)
Q Consensus       602 ~~~~  605 (647)
                      ++.+
T Consensus       392 ~~~~  395 (417)
T PHA02638        392 LMIF  395 (417)
T ss_pred             HHHH
Confidence            5543

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=100.00  E-value=1.6e-32  Score=276.84  Aligned_cols=282  Identities=22%  Similarity=0.338  Sum_probs=213.3

Q ss_pred             hhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccc
Q psy9472         300 RLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKIS  379 (647)
Q Consensus       300 ~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~  379 (647)
                      +....+..+++.+++++|++||+++++++.++ ++|++.++++.|||++|++.++ ..|..........|..++..|++.
T Consensus        37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~  114 (335)
T PHA03087         37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIV  114 (335)
T ss_pred             cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHH
Confidence            34556788899999999999999999999888 8899999999999999998865 456555444456788899999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCC
Q psy9472         380 ESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNN  459 (647)
Q Consensus       380 ~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (647)
                      .++......+|++++++||+|||++|++|++     |+...+.+++..+++++|+.+++.++|++.........      
T Consensus       115 ~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~-----~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~------  183 (335)
T PHA03087        115 SGLYYIGFYNSMNFITVMSVDRYIAIVHPVK-----SNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDH------  183 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-----cccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccC------
Confidence            9999999999999999999999999999999     77888999999999999999999999887654432211      


Q ss_pred             ceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHH
Q psy9472         460 TLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTF  539 (647)
Q Consensus       460 ~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i  539 (647)
                       ....|........ ..+.........++.+++|+++++++|.++.++++++.+            .++++|..|++..+
T Consensus       184 -~~~~C~~~~~~~~-~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~------------~~~~~k~~k~l~~i  249 (335)
T PHA03087        184 -ETLICCMFYNNKT-MNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK------------SKKNKKAIKLVLII  249 (335)
T ss_pred             -CCceEEecCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------chhcchHHHhHHHH
Confidence             1235654443221 222223333445677899999999999999999986532            24567889999999


Q ss_pred             HHHHhhccccHHHHHHHHHhCC---CCCCCchhHHHHHHHHhhhh--hccC-chhHHhhcCCccccccccccCCC
Q psy9472         540 VVVFAMCFFPQHFFFLWFYINP---TAPDDYNDFWHILRIMSSKI--INSR-NANARRFHRPSTYSSTRKWDSVS  608 (647)
Q Consensus       540 ~~~f~~~w~P~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~ns~-NPiI~~fr~~~~~~~~~~~~~~~  608 (647)
                      +++|++||.|+.+..++.....   ...............+...+  +|++ ||+||.++++.+|...|+..+..
T Consensus       250 v~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~  324 (335)
T PHA03087        250 VILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLM  324 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHH
Confidence            9999999999999877654421   11112222222222222222  9999 99999999988887777665443

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.97  E-value=1.3e-30  Score=253.80  Aligned_cols=255  Identities=29%  Similarity=0.502  Sum_probs=211.8

Q ss_pred             hhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchhhhhhhHHHHHHHHHHHHH
Q psy9472         320 GNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSA  399 (647)
Q Consensus       320 ~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~  399 (647)
                      ||+++++++.++|++|++.+++++|||++|++.++...|........++|..++..|++..++..++..+|.++++++++
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~   80 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI   80 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999999999999998888877666655789999999999999999999999999999999


Q ss_pred             hhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeeecCCCCCCCCCcch
Q psy9472         400 DRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPR  479 (647)
Q Consensus       400 dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~  479 (647)
                      |||++|++|++     |++..+++++...++++|++++++++|+.+.........+.     ...|........    ..
T Consensus        81 dRy~~i~~p~~-----~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~-----~~~C~~~~~~~~----~~  146 (257)
T PF00001_consen   81 DRYLAICHPLR-----YRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGS-----QSFCFIDFSSSS----SQ  146 (257)
T ss_dssp             HHHHHHHSHHT-----HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCC-----CEEEEESCSSSH----HH
T ss_pred             ccccccccccc-----ccccccccccccccccccccccccccccccccccccccccc-----cccccccccccc----cc
Confidence            99999999999     78888899999999999999999999998775544433221     357876544322    34


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-cchhhhhHhhhhhhHHHHHHHHHHhhccccHHHHHHHHH
Q psy9472         480 TVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGEL-QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFY  558 (647)
Q Consensus       480 ~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~  558 (647)
                      .+.....++.+++|+++++++|.+++++++++.++..... +..+++.++++|.++++..++++|++||+|+.+..++..
T Consensus       147 ~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~  226 (257)
T PF00001_consen  147 IYFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSV  226 (257)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHHHHH
Confidence            5667778889999999999999999999999887655433 344556688899999999999999999999999999988


Q ss_pred             hCCCCCCCchhHHHHHHHHhhhhhccC-chhHH
Q psy9472         559 INPTAPDDYNDFWHILRIMSSKIINSR-NANAR  590 (647)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~  590 (647)
                      ..+...............+.+  +|++ ||+||
T Consensus       227 ~~~~~~~~~~~~~~~~~~l~~--~~s~~nP~iY  257 (257)
T PF00001_consen  227 FSPSSSLISSILFYISYFLAF--LNSCLNPIIY  257 (257)
T ss_dssp             HSSTSTCSHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             HcCccchhhHHHHHHHHHHHH--HHHhhCcEEC
Confidence            876663333444455555555  9999 99997

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>KOG4219|consensus

Probab=99.96  E-value=1.3e-28  Score=232.39  Aligned_cols=204  Identities=24%  Similarity=0.446  Sum_probs=163.2

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCC----
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPID----   76 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~----   76 (647)
                      ||+|||+||.||++.       +.++|.+..+++++|+.++++++|..+....+......+  .....|...++..    
T Consensus       129 iA~DRy~AIi~Pl~~-------r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~--~~~~~~~~~~pe~~~~~  199 (423)
T KOG4219|consen  129 IAIDRYMAIIHPLQP-------RPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDG--ESRVVCVTAWPEHVCPT  199 (423)
T ss_pred             HHHHHHHHHhhhccc-------CCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCC--cceEEEEEecccccCCc
Confidence            589999999999994       489999999999999999999999988777766554322  1223466555443    


Q ss_pred             -CCCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHH
Q psy9472          77 -GYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQH  155 (647)
Q Consensus        77 -~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~  155 (647)
                       ......+.|...+.++.+++|++++..+|..|.+.+|.++.. ..+.++..++.+.++|+.||++++++.|.+||+||+
T Consensus       200 ~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~-gd~~d~~~~~~kak~K~vkmliiVV~~FaicWlPyh  278 (423)
T KOG4219|consen  200 ENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIP-GDQQDRKHEQLKAKKKVVKMLIIVVVIFAICWLPYH  278 (423)
T ss_pred             chhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCc-cchhchhhHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence             111222347788889999999999999999999999976632 223334556778899999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccc
Q psy9472         156 FFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKM  216 (647)
Q Consensus       156 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~  216 (647)
                      +..++....+..  ..+...+.+.....+|+++|+|.||+||+++|++||..+++.++|+.
T Consensus       279 ~y~il~~~~~~i--~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp  337 (423)
T KOG4219|consen  279 IYFILNATNPEI--NRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCP  337 (423)
T ss_pred             HHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence            999988754432  23445577888899999999999999999999999999999999884

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.94  E-value=5.6e-26  Score=230.83  Aligned_cols=196  Identities=18%  Similarity=0.286  Sum_probs=138.6

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||++|++|.+..      ..+++++..+++++|+.++++++|++++..................|...+..+....
T Consensus       126 ISiDRY~aI~~p~~~~------~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~  199 (409)
T PHA03235        126 IAADRYRVIHQRTRAR------SSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKT  199 (409)
T ss_pred             HHHHHHHHeechhhcc------CcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceeeEeCCchhHHH
Confidence            6899999999998632      3568889999999999999999997654322111110000011123765443322111


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW  160 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~  160 (647)
                      ....|.+..+++.|++|+++|++||.+|++.++++.+             ++++|..+++++++++|++||+||++..++
T Consensus       200 ~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~-------------~~~~k~~~~v~iivv~F~iCWlPy~v~~l~  266 (409)
T PHA03235        200 VLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY-------------KKRSRTLTFVCILLLSFLCLQTPFVAIMIF  266 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------hcchhhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence            1234556667778999999999999999999986421             234677889999999999999999999887


Q ss_pred             HHhcCC---CCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccc
Q psy9472         161 FYINPT---APDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCK  215 (647)
Q Consensus       161 ~~~~~~---~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~  215 (647)
                      ..+...   ...........+..++.+++++||++||+||++++++||+++++.++++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~  324 (409)
T PHA03235        267 DSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGE  324 (409)
T ss_pred             HHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhh
Confidence            654321   1111122234566788999999999999999999999999999988654

>KOG2087|consensus

Probab=99.93  E-value=6.1e-28  Score=225.65  Aligned_cols=288  Identities=20%  Similarity=0.233  Sum_probs=227.5

Q ss_pred             eccCCCCCCCccchhhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeee
Q psy9472         286 INTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT  365 (647)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~  365 (647)
                      ...+.++...|+++.....++.+..+++.+++++||.+|+......+...++..+++.|||++|+++|+....+...+..
T Consensus         7 ~C~P~~da~~pcEdllg~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~   86 (363)
T KOG2087|consen    7 TCKPSPDAFNPCEDLLGYWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAK   86 (363)
T ss_pred             eecCCCCCCCcHHHhhccceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHH
Confidence            44556677788888899999999999999999999999999988877777788999999999999999876665555444


Q ss_pred             ec-------cccccccccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHH
Q psy9472         366 FE-------SWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAIL  438 (647)
Q Consensus       366 ~~-------~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~  438 (647)
                      ..       .|..+...|++.+++..+.+..|+++++.+++||+++|.+|++     -++....|....+++..|+.+++
T Consensus        87 ~~gey~~~ai~W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~-----~~~~~~lr~~~~ill~~wl~~~l  161 (363)
T KOG2087|consen   87 TRGEYYKHAIDWQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFR-----LDRKAKLRPLVLILLLGWLFAFL  161 (363)
T ss_pred             HHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheecccc-----CCCcccccHHHHHHHHHHHHHHH
Confidence            32       1334567999999999999999999999999999999999999     66777777799999999999999


Q ss_pred             hhhccchheeeeeeecCCCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q psy9472         439 CAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGE  518 (647)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~  518 (647)
                      .++.|+++..         .......|.+....+..+..   +.+..++....+.+++|.++|.+++..+++......  
T Consensus       162 ~A~~Pl~g~s---------~Y~~~~vClPL~~~~~~s~g---~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~--  227 (363)
T KOG2087|consen  162 MALLPLFGIS---------SYGASSVCLPLHIEEPLSTG---YYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSAT--  227 (363)
T ss_pred             HHhccccCCC---------CCcccceeeecccCCccchh---HHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCccc--
Confidence            9988877632         22334789988777653332   566777888999999999999999999986432211  


Q ss_pred             ccchhhhhHhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCcc
Q psy9472         519 LQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPST  597 (647)
Q Consensus       519 ~~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~  597 (647)
                              ....+.+|-++.++++-++||.|..++.+...++.+........+..+..+.   +|+| ||++|.|-.+.+
T Consensus       228 --------~~~~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~li~~~~sk~llv~flP---lns~~NP~LYa~fT~~f  296 (363)
T KOG2087|consen  228 --------LISTSVAKRMAFLVFTDCICWCPIAFFKFSALIGVELISVSYSKWLLVFFLP---LNSCLNPFLYAFFTPVF  296 (363)
T ss_pred             --------cchhhhhhCeeEEEEccccccCchheeeeHHhcCCcccChhhceeEEEEEEE---cccccCchhHHHcCHHH
Confidence                    1114778888999999999999999999998888776655443332222222   9999 999998877776


Q ss_pred             cccccc
Q psy9472         598 YSSTRK  603 (647)
Q Consensus       598 ~~~~~~  603 (647)
                      |...+.
T Consensus       297 k~d~~~  302 (363)
T KOG2087|consen  297 KEDLFL  302 (363)
T ss_pred             HHHHHH
Confidence            665554

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.92  E-value=4.5e-25  Score=219.43  Aligned_cols=183  Identities=16%  Similarity=0.237  Sum_probs=127.6

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||+||++|.+.     +  .+.++....++.+|+.+++.++|.+.........+.      ...|...++.+.  .
T Consensus       126 ISiDRY~aIv~p~~~-----~--~~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~------~~~C~~~~~~~~--~  190 (338)
T PHA03234        126 IATIRYKTLHRRKKN-----D--KKNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGN------YGKCNIHISSKK--A  190 (338)
T ss_pred             HHHHhHeeeechhhh-----h--hhhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCC------CCcCcccCCcch--h
Confidence            689999999999983     2  223444455666799999999998765433221111      013876554321  1


Q ss_pred             Ccchhh---hhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHH
Q psy9472          81 YPRTVI---IMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFF  157 (647)
Q Consensus        81 ~~~~~~---~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~  157 (647)
                      + ..+.   .....+.|++|+++|++||.+|.+++++.             +.++++|++|++++++++|++||+||++.
T Consensus       191 ~-~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~-------------~~~~~~k~~k~i~~vv~vF~iCWlPy~iv  256 (338)
T PHA03234        191 Y-DLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHAL-------------TEKKHKKTLFFIRILILSFLCIQIPNIAI  256 (338)
T ss_pred             h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hhhhhhhhhhHHHHHHHHHHHHHhHHHHH
Confidence            1 1111   12233457899999999999999998642             12456899999999999999999999998


Q ss_pred             HHHHHhcC---CCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhh
Q psy9472         158 FLWFYINP---TAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYL  212 (647)
Q Consensus       158 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~  212 (647)
                      .++.....   ..++......+....++..++++|||+||++|++.+++||+++++.+
T Consensus       257 ~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~  314 (338)
T PHA03234        257 LICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACF  314 (338)
T ss_pred             HHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHH
Confidence            87654421   11122222334566788999999999999999999999999988766

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.91  E-value=1.7e-24  Score=215.87  Aligned_cols=189  Identities=19%  Similarity=0.343  Sum_probs=133.7

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||++|++|++     +.. .+.+++..+++++|+.+++.++|++++......  + .    ...|.......+ ..
T Consensus       119 IsidRY~aI~~P~~-----~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~--~-~----~~~C~~~~~~~~-~~  184 (323)
T PHA02834        119 ISIDRYILVVNATK-----IKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVDNT--D-N----LKQCIFNDYHEN-FS  184 (323)
T ss_pred             HHHHHhhheeCchh-----ccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhccC--C-C----ceEEeccCCccc-hH
Confidence            58999999999998     332 355677788899999999999998765432111  1 1    123763221111 11


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW  160 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~  160 (647)
                      +...+.....++.|++|+++|+++|.+|.++++++.+             ++++|.+|++++++++|++||+||++..++
T Consensus       185 ~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~-------------~~~~k~~k~~~~vv~~F~icWlPy~i~~~l  251 (323)
T PHA02834        185 WSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN-------------KNKTRSIKIILTVVTFTVVFWVPFNIVLFI  251 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------cccceEEeehhHHHHHHHHHHhhHHHHHHH
Confidence            1122333345778999999999999999999976432             135688999999999999999999999887


Q ss_pred             HHhcCCCC--CC--hhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccc
Q psy9472         161 FYINPTAP--DD--YNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKM  216 (647)
Q Consensus       161 ~~~~~~~~--~~--~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~  216 (647)
                      ..+.....  .+  ..........++.+++++||++||++|++++++||+++++.+++..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~~~  311 (323)
T PHA02834        252 NSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCRTN  311 (323)
T ss_pred             HHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHhhh
Confidence            66543211  11  1111122345788999999999999999999999999999886543

>KOG4220|consensus

Probab=99.91  E-value=1.8e-24  Score=203.58  Aligned_cols=199  Identities=23%  Similarity=0.395  Sum_probs=154.8

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||..|.+|+.     |+.+.|.+++..+|+++|++|+++-.|..++|.+.........    ++|...+-..    
T Consensus       124 ISFDRYFsVTrPLt-----YrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~----~eC~iQFlsn----  190 (503)
T KOG4220|consen  124 ISFDRYFSVTRPLT-----YRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPD----GECYIQFLSN----  190 (503)
T ss_pred             eeeecceeeccccc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCC----CceEEEeecC----
Confidence            68999999999999     8889999999999999999999999998876644322221111    2387655432    


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCC----------------C----------------------
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG----------------E----------------------  122 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~----------------~----------------------  122 (647)
                        ...++-..+.-|-+|..+|.++|.+|++..+++.+....                +                      
T Consensus       191 --p~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p~~~~~~~~~  268 (503)
T KOG4220|consen  191 --PAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRSSPSEEGKREPL  268 (503)
T ss_pred             --ceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCCCCccccccccC
Confidence              233445566778899999999999999998765321100                0                      


Q ss_pred             --------------------------cc----------------------------------------------------
Q psy9472         123 --------------------------LQ----------------------------------------------------  124 (647)
Q Consensus       123 --------------------------~~----------------------------------------------------  124 (647)
                                                .+                                                    
T Consensus       269 ~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~~i~i~~~~~  348 (503)
T KOG4220|consen  269 TNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGLNTLIQIPTDQM  348 (503)
T ss_pred             CCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCccccccccccccccC
Confidence                                      00                                                    


Q ss_pred             ------------------------------h--------------------h-----HHHHHHHhHhHHHHHHHHHHHHH
Q psy9472         125 ------------------------------G--------------------Q-----TRQIRARKKVAKTVLTFVVVFAM  149 (647)
Q Consensus       125 ------------------------------~--------------------~-----~~~~~~~~k~~~~~~~i~~~f~~  149 (647)
                                                    .                    +     .....+|+|++|++.+|++.|++
T Consensus       349 ~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTLsAILlAFIi  428 (503)
T KOG4220|consen  349 LPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAKTLSAILLAFIL  428 (503)
T ss_pred             CCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHH
Confidence                                          0                    0     00125889999999999999999


Q ss_pred             hhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccccccc
Q psy9472         150 CFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKI  220 (647)
Q Consensus       150 ~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~~  220 (647)
                      +|+||.++.++..+.+....      +.++.+..+|.|+||-+||+.|.+.|+.||+.+++++.|+.+++.
T Consensus       429 TWtPYNImVlv~tFC~~CiP------~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~Cr~~~~~  493 (503)
T KOG4220|consen  429 TWTPYNIMVLVNTFCKNCIP------ETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLCRWKKRR  493 (503)
T ss_pred             HcccceeeeehHhhcccccc------hhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhheeeecccc
Confidence            99999999999988776443      457789999999999999999999999999999999998876654

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.90  E-value=1.4e-23  Score=214.48  Aligned_cols=196  Identities=16%  Similarity=0.256  Sum_probs=140.0

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeecc---CCCCCccceeeecCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKD---DTNNNTLFESCYPFPPIDG   77 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~---~~~~~~~~~~C~~~~~~~~   77 (647)
                      |++|||+||+||.+     |+...+++.+..+++++|+.++++++|+++.........   +.........|...++.+.
T Consensus       189 isiDRYlaIv~p~~-----~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~  263 (417)
T PHA02638        189 MSIDRYFAILYPIS-----FQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDNEK  263 (417)
T ss_pred             HHHHHHHHHhcccc-----ccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCeeeeeccccc
Confidence            58999999999998     555677788888999999999999999987544321110   0000001124754433221


Q ss_pred             --CCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHH
Q psy9472          78 --YPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQH  155 (647)
Q Consensus        78 --~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~  155 (647)
                        ...+...+.+...++++++|+++|++||.+|++.+++.+             .++++|.+|++++++++|++||+||+
T Consensus       264 ~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~-------------~~~k~k~~rli~~ivi~f~lcW~Py~  330 (417)
T PHA02638        264 NNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLK-------------KSKKTKSIIIVSIIIICSLICWIPLN  330 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------ccccchhhhhHHHHHHHHHHHHhhHH
Confidence              111222334445677789999999999999999997532             12457889999999999999999999


Q ss_pred             HHHHHHHhcCC---------CCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccc
Q psy9472         156 FFFLWFYINPT---------APDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCK  215 (647)
Q Consensus       156 i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~  215 (647)
                      +..++..+...         .++... .......++..++++|||+||++|++.+++||+++++.+++.
T Consensus       331 i~~ll~~~~~~~~~~~~~~~~~c~~~-~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~  398 (417)
T PHA02638        331 IVILFATMYSFKGFNSIISEHICGFI-KLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNI  398 (417)
T ss_pred             HHHHHHHHHHhhccccccccccccHH-HHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHh
Confidence            99888765421         112222 234556678899999999999999999999999999988544

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.88  E-value=3.5e-22  Score=201.60  Aligned_cols=194  Identities=22%  Similarity=0.312  Sum_probs=143.3

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||++|++|++     |....+.+++..+++++|+.+++.++|+............       ..|...+.... ..
T Consensus       132 iaidRy~aI~~p~~-----~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~~-------~~C~~~~~~~~-~~  198 (335)
T PHA03087        132 MSVDRYIAIVHPVK-----SNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHET-------LICCMFYNNKT-MN  198 (335)
T ss_pred             HHHHHHHHhhccCc-----cccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCCC-------ceEEecCCCcc-hh
Confidence            58999999999999     6668899999999999999999999998765543322211       12655444221 11


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW  160 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~  160 (647)
                      +...+.+...++.+++|+++++++|.++.++++++.+            .++++|+.|++.+++++|++||+|+++..++
T Consensus       199 ~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~------------~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~  266 (335)
T PHA03087        199 WKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK------------SKKNKKAIKLVLIIVILFVIFWLPFNVSVFV  266 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------chhcchHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            2222233345667899999999999999998875421            2356789999999999999999999998776


Q ss_pred             HHhcC---CCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccccccc
Q psy9472         161 FYINP---TAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSK  219 (647)
Q Consensus       161 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~  219 (647)
                      .....   ..........+.+..++.+++.+|+++||+||++++++||+++++.++....++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~~~~~  328 (335)
T PHA03087        267 YSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMFTSS  328 (335)
T ss_pred             HHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHHhhcC
Confidence            54421   122222333455667888999999999999999999999999999987554443

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.82  E-value=8.2e-20  Score=177.61  Aligned_cols=179  Identities=29%  Similarity=0.565  Sum_probs=145.0

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||++|++|++     |++..+++++..+++++|++++++++|+.+.........+.     ...|..+.....   
T Consensus        78 is~dRy~~i~~p~~-----~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~-----~~~C~~~~~~~~---  144 (257)
T PF00001_consen   78 ISIDRYLAICHPLR-----YRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGS-----QSFCFIDFSSSS---  144 (257)
T ss_dssp             HHHHHHHHHHSHHT-----HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCC-----CEEEEESCSSSH---
T ss_pred             cccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccc-----cccccccccccc---
Confidence            57999999999999     66688899999999999999999999998765544443322     123876655432   


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc-chhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGEL-QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFL  159 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~  159 (647)
                       ...+.....++.+++|+++++++|.++.+.++++.++..+.. +...++.++|+|.++++++++++|++||+|+.+..+
T Consensus       145 -~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~  223 (257)
T PF00001_consen  145 -SQIYFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSL  223 (257)
T ss_dssp             -HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cccccccccccccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHH
Confidence             346777778888999999999999999999998877655433 345566778999999999999999999999999999


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHH
Q psy9472         160 WFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIAL  197 (647)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY  197 (647)
                      +.......+.    .......++.++.++|+++||++|
T Consensus       224 ~~~~~~~~~~----~~~~~~~~~~~l~~~~s~~nP~iY  257 (257)
T PF00001_consen  224 LSVFSPSSSL----ISSILFYISYFLAFLNSCLNPIIY  257 (257)
T ss_dssp             HHHHSSTSTC----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCccch----hhHHHHHHHHHHHHHHHhhCcEEC
Confidence            8888766521    336777899999999999999998

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.74  E-value=2.3e-18  Score=164.70  Aligned_cols=254  Identities=17%  Similarity=0.226  Sum_probs=176.6

Q ss_pred             HHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchhhhhhhHHHHHHHH
Q psy9472         315 VVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTL  394 (647)
Q Consensus       315 ~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l  394 (647)
                      ++|++||..++.++.++|++|++.+++++.+|++|++.++..+|......  ++.......|-...+...++.......+
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~   79 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIM   79 (257)
T ss_pred             EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999776666654222  2334556789999999999999999999


Q ss_pred             HHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeeecCCCCCCC
Q psy9472         395 TALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGY  474 (647)
Q Consensus       395 ~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~  474 (647)
                      .+|++||++||+.|.+     |+...+.+..........+.+.......+.     ..+     ++....|.+.....+ 
T Consensus        80 l~i~iDr~iaV~~P~~-----Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~~-----~~~-----~~~~~~C~pp~a~~~-  143 (257)
T PF10320_consen   80 LAIAIDRLIAVCFPLR-----YRTISTRKYLIILLIFPVIYSIFFTVIGFL-----YRD-----DETIVICNPPLAFHG-  143 (257)
T ss_pred             HHHHhhheeeEeehhh-----hhhcccccchhhHhHHHHHHHHHHHhheeE-----ecC-----CcccccCCCccccCc-
Confidence            9999999999999999     777788776555555555555554332211     111     123457876444322 


Q ss_pred             CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHHHhhccccHHHHH
Q psy9472         475 PNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFF  554 (647)
Q Consensus       475 ~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~i~~  554 (647)
                          ....+... ... +.-++.++.|...+...+++.++          ..++++|..|.+...++.|+++|.-..+..
T Consensus       144 ----~~~~~~~~-~~~-~inv~tvivY~i~~~~~~~k~~~----------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~  207 (257)
T PF10320_consen  144 ----TASQIWSY-SNI-IINVITVIVYIITIIIFKRKSRS----------NSSRSKKVFKSLKVTVIIFIFSWFLSQIIN  207 (257)
T ss_pred             ----cHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHccc----------cchhHHHHHHHhhhheeeeeHHHHHHHHHH
Confidence                12222211 122 22344566777777777765332          345678999999999999999999888877


Q ss_pred             HHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCccccccccc
Q psy9472         555 LWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKW  604 (647)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~  604 (647)
                      .+......+............+...  .|.+ |.++|-+|+++.|+..|+.
T Consensus       208 ~v~~~~~~~~~~~~~i~~~~~i~v~--~~~s~~ffV~~~~S~EYR~af~~~  256 (257)
T PF10320_consen  208 TVSLALGLDGETIAIIQMYAGIFVN--ISYSQNFFVYYWRSSEYRKAFREL  256 (257)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHH--HHHHHHheEEEEcCHHHHHHHHHh
Confidence            7766544443333333344444444  8888 9999888888877766653

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.70  E-value=7.9e-17  Score=161.14  Aligned_cols=280  Identities=18%  Similarity=0.252  Sum_probs=188.4

Q ss_pred             HHHHHHHhhHHhhhhhhhcCCCC-CCccchhhHHHHHHHHHHhhcccceeeeeeec---c--cc----ccccccccchhh
Q psy9472         313 IFVVGVLGNGTLVLIFINHKSMR-NVPNIYILSLALGDLLVILTCVPFTSTVYTFE---S--WP----YGESICKISEST  382 (647)
Q Consensus       313 ~~~~g~~~N~~vl~~i~~~~~l~-~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~---~--~~----~~~~~C~~~~~~  382 (647)
                      +.++|+++|.+.+.++.|+. +| ++.|.+++.+|++|++..+...+.........   +  .+    .......+...+
T Consensus         6 ~~~~g~~~N~~h~~VLtrk~-mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l   84 (318)
T PF10324_consen    6 LSIFGLFINIFHLIVLTRKS-MRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESL   84 (318)
T ss_pred             EeHHHHHHHHHHhhhcCChh-hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Confidence            46789999999999996554 56 58999999999999999777666554322211   0  00    111122344567


Q ss_pred             hhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCcee
Q psy9472         383 KDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLF  462 (647)
Q Consensus       383 ~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (647)
                      ...+..+|.|..++||+.|++++.+|....   .+...+++.+...+.++++.+.++..+.++.....+..+.   ....
T Consensus        85 ~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~---~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~---~~p~  158 (318)
T PF10324_consen   85 SDIFRRISIWLGVLMALIRYLSIKFPMSSR---FQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDP---WVPP  158 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEecccc---ccCC
Confidence            777888999999999999999999998832   3456678888889999999999999888765554432211   1112


Q ss_pred             eeeecCCCCCCCCCcc---------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhH
Q psy9472         463 ESCYPFPPIDGYPNYP---------------RTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIR  527 (647)
Q Consensus       463 ~~C~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~  527 (647)
                      ..|...+.....+.+.               ..+.+...++.-++|.++..++.+.+.+++|+.++++++..+.+   .+
T Consensus       159 ~~C~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~---~~  235 (318)
T PF10324_consen  159 PNCSGFPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSK---SK  235 (318)
T ss_pred             CceeeccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccc---cc
Confidence            3575332211111111               12333334445789999999999999999998877655443211   45


Q ss_pred             hhhhhhHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhh-hccC-chhH-----HhhcCCccccc
Q psy9472         528 ARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKI-INSR-NANA-----RRFHRPSTYSS  600 (647)
Q Consensus       528 ~~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ns~-NPiI-----~~fr~~~~~~~  600 (647)
                      ++.+.++++..+++.|+++-+|..+..++..+..+.................+. +|+. |++|     .+||+..++.+
T Consensus       236 ~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f  315 (318)
T PF10324_consen  236 KSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLF  315 (318)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHh
Confidence            677899999999999999999999999998874443322222222222222222 9999 9999     56677665555


Q ss_pred             cc
Q psy9472         601 TR  602 (647)
Q Consensus       601 ~~  602 (647)
                      ++
T Consensus       316 ~~  317 (318)
T PF10324_consen  316 GC  317 (318)
T ss_pred             cc
Confidence            44

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.54  E-value=7.4e-14  Score=135.98  Aligned_cols=228  Identities=14%  Similarity=0.122  Sum_probs=158.6

Q ss_pred             HHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecccccccc-ccccchhhhhhhHHHHH
Q psy9472         313 IFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGES-ICKISESTKDISVGVSV  391 (647)
Q Consensus       313 ~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~s~  391 (647)
                      ++++|++.|.++++.+.+.+++|++.+.+-.+.|++|.+.++..+.........+.....+. .-.+.+.....+...+.
T Consensus         3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~   82 (274)
T PF10328_consen    3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGP   82 (274)
T ss_pred             eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999997754433222222221111221 22334667777888899


Q ss_pred             HHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchhee-eeeeecCCCCCceeeeeecCCC
Q psy9472         392 FTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSY-VRAFKDDTNNNTLFESCYPFPP  470 (647)
Q Consensus       392 ~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~~~  470 (647)
                      ++.++||++|+.||..|.+     |++..+.+.+..+++++|++++....+...... ...++.+       ..-+....
T Consensus        83 ~~~~liaiNRf~ai~fP~~-----y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~-------~~~~~~~~  150 (274)
T PF10328_consen   83 LSHLLIAINRFCAIFFPFK-----YKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPE-------TWSWSYPT  150 (274)
T ss_pred             HHHHHHHHHHHheeeeHHH-----HHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccc-------eeeeecCC
Confidence            9999999999999999999     888999999999999999999977655543221 1111111       11111100


Q ss_pred             CCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHHHhhccccH
Q psy9472         471 IDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQ  550 (647)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~  550 (647)
                      .+.    -..+..........+-.+++.+++..++.++++.+++....++..+++.++|.+..+.....-+.|++.+.-+
T Consensus       151 ~~~----C~~~~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~  226 (274)
T PF10328_consen  151 DPP----CGNYSWYFDFYKNFILVIISNILNIITFIKLRKFRKKISVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFY  226 (274)
T ss_pred             CCc----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000    0111222233444455667778889999888887777645555567777889999999999999999998877


Q ss_pred             HHHHHH
Q psy9472         551 HFFFLW  556 (647)
Q Consensus       551 ~i~~~~  556 (647)
                      .+..-+
T Consensus       227 ~~~~~~  232 (274)
T PF10328_consen  227 FFIPPL  232 (274)
T ss_pred             HHHHHh
Confidence            765443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>KOG2087|consensus

Probab=99.52  E-value=1.5e-15  Score=143.08  Aligned_cols=183  Identities=21%  Similarity=0.263  Sum_probs=132.7

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      +++||+++|++|++     -.+....|....+.+.+|+.+++.++.|++....+         .....|.+....+... 
T Consensus       125 itlEr~l~i~~p~~-----~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y---------~~~~vClPL~~~~~~s-  189 (363)
T KOG2087|consen  125 ITLERWLSITYPFR-----LDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSY---------GASSVCLPLHIEEPLS-  189 (363)
T ss_pred             HHHHHHhheecccc-----CCCcccccHHHHHHHHHHHHHHHHHhccccCCCCC---------cccceeeecccCCccc-
Confidence            47899999999999     34456677799999999999999988776552211         1112388765554433 


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW  160 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~  160 (647)
                        ..|+...++..-.+-+++|+++|.+++..+++......          .+..+.+|-+..++++-.+||.|.+++.+.
T Consensus       190 --~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~----------~~~~~~akr~a~LvfTd~icw~Pi~f~~~~  257 (363)
T KOG2087|consen  190 --TGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSAT----------LISTSVAKRMAFLVFTDCICWCPIAFFKFS  257 (363)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCccc----------cchhhhhhCeeEEEEccccccCchheeeeH
Confidence              21455556667789999999999999999975432211          011467777888899999999999999888


Q ss_pred             HHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccc
Q psy9472         161 FYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCK  215 (647)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~  215 (647)
                      ..++........     ...+..++.-+|||+||++|.++++.||+.++..+...
T Consensus       258 al~~~~li~~~~-----sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~  307 (363)
T KOG2087|consen  258 ALIGVELISVSY-----SKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKV  307 (363)
T ss_pred             HhcCCcccChhh-----ceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhc
Confidence            877665443211     11234455669999999999999999999998877544

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.50  E-value=1.9e-13  Score=136.78  Aligned_cols=205  Identities=19%  Similarity=0.263  Sum_probs=148.4

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+.|+++|.+|++.+   .+...+++.+..++..+++.+.+++.+.++.....+..+...   +...|...........
T Consensus        99 mA~iR~l~i~~p~~~~---~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~---p~~~C~~~~~~~~~~~  172 (318)
T PF10324_consen   99 MALIRYLSIKFPMSSR---FQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWV---PPPNCSGFPENYTFPR  172 (318)
T ss_pred             HHHHHHHHHHhhcccc---ccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEecccccc---CCCceeeccccccccc
Confidence            5889999999999854   345778899999999999999999998876554443321111   1123763221111111


Q ss_pred             C---------------cchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHH
Q psy9472          81 Y---------------PRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVV  145 (647)
Q Consensus        81 ~---------------~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~  145 (647)
                      +               .+.+.....++.-++|.++..++...+.+.+++.++++++..+++   .+++.+++++++.+++
T Consensus       173 Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~---~~~~~~tt~li~~~ti  249 (318)
T PF10324_consen  173 YMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSK---SKKSDRTTKLILFMTI  249 (318)
T ss_pred             cchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccc---cccccchHHHHHHHHH
Confidence            1               112333334444689999999999999999987766554443111   4577899999999999


Q ss_pred             HHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccc
Q psy9472         146 VFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCK  215 (647)
Q Consensus       146 ~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~  215 (647)
                      .|+++.+|+.+..++..+....+ ........+..+...+..+|+..|+++|+.++.+||++++++++|+
T Consensus       250 ~f~i~e~p~gi~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~k  318 (318)
T PF10324_consen  250 SFLISELPQGIIFLLESFFEEDS-GLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGCK  318 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhccC
Confidence            99999999999999988744322 2344456677889999999999999999999999999999999874

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=99.37  E-value=5.3e-12  Score=123.49  Aligned_cols=240  Identities=18%  Similarity=0.203  Sum_probs=158.8

Q ss_pred             hHhHHHHHHHHHHHHHHhhHHhhhhhhh---cCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccc
Q psy9472         303 TYLVPIVFAFIFVVGVLGNGTLVLIFIN---HKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKIS  379 (647)
Q Consensus       303 ~~~~~~~~~~~~~~g~~~N~~vl~~i~~---~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~  379 (647)
                      ..+..++..+..++|++||++++.+...   +++.-++.+..+.+||+++++................+....+..+++.
T Consensus         6 ~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (303)
T PF05296_consen    6 EIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKII   85 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHH
Confidence            4567888899999999999999888764   3333468999999999999998655443333333323333455678888


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHH--HhhhccchheeeeeeecCCC
Q psy9472         380 ESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAI--LCAIPSMTLSYVRAFKDDTN  457 (647)
Q Consensus       380 ~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~--~~~~~~~~~~~~~~~~~~~~  457 (647)
                      .++..+....|.+..+++++--++.|...-+.... +-+++=.+.+..++.+.++.++  ...+|..  ...........
T Consensus        86 ~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl-~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~--~~~~~~~~~~~  162 (303)
T PF05296_consen   86 DFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFL-WLKRRISKVVPWLLLGSLLISFLNLLSIPLF--IDNHINNNNTN  162 (303)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--eeeeecccccc
Confidence            88888899999999999999999999876543322 1122222334456777888888  3344432  22111100000


Q ss_pred             CCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-chhhhhHhhhhhhHHH
Q psy9472         458 NNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQ-GQTRQIRARKKVAKTV  536 (647)
Q Consensus       458 ~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~k~~~~~  536 (647)
                            .+.+.............+......+..++|+++++++...+...++||.|+++...+ .+..+.+.+.|+.|++
T Consensus       163 ------~~~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~  236 (303)
T PF05296_consen  163 ------NSRNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTM  236 (303)
T ss_pred             ------CCCcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHH
Confidence                  111111111112223333444445888999999999999999999999998876543 3556778899999999


Q ss_pred             HHHHHHHhhccccHH
Q psy9472         537 LTFVVVFAMCFFPQH  551 (647)
Q Consensus       537 ~~i~~~f~~~w~P~~  551 (647)
                      ....+.|++++.-..
T Consensus       237 ~sfl~ly~~~~~~~~  251 (303)
T PF05296_consen  237 ISFLILYIIYFLSLI  251 (303)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            988888888665443

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=99.30  E-value=6.7e-11  Score=114.04  Aligned_cols=253  Identities=13%  Similarity=0.203  Sum_probs=157.5

Q ss_pred             HhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchhhh
Q psy9472         304 YLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTK  383 (647)
Q Consensus       304 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~  383 (647)
                      .....+..+.++++++|-++++..+...|++|++.+-++.-++++|++..+..+.....    .+-..++..|.+++++.
T Consensus         7 ~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~----~~~~~~s~lC~~Qafli   82 (303)
T PF05462_consen    7 RTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLS----PSAGENSFLCQFQAFLI   82 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCCCCcchhhHhHHH
Confidence            34566777778899999999999999999999999999999999999976543332211    22234577899999999


Q ss_pred             hhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceee
Q psy9472         384 DISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFE  463 (647)
Q Consensus       384 ~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (647)
                      .++..++.+-.++||++=|+.+++...         ..++.-....+++|.++++.++.++....         .+....
T Consensus        83 q~f~~as~lWt~~iA~nly~~~~~~~~---------~~~k~e~~Y~l~~wGiPli~a~i~l~~~~---------~g~~G~  144 (303)
T PF05462_consen   83 QFFMLASFLWTLCIAFNLYLTFVKRYD---------ELEKLEKYYHLVCWGIPLIPAVIPLIGND---------YGPAGN  144 (303)
T ss_pred             HHhhHHHHHHHHHHHHHhhheeEEcCc---------cHHHHHHHHHHHHHHHHHHHHHHHHHccC---------CCCCCC
Confidence            999999999999999999999987543         23455567889999999998876653221         112224


Q ss_pred             eeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHH
Q psy9472         464 SCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIAC----FYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTF  539 (647)
Q Consensus       464 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~----~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i  539 (647)
                      .|+...+.+.       +    -+..+.+|+.+++.    .+....+...+..+   ....   .+.+++.|...-+..=
T Consensus       145 WCWI~~~~~~-------~----r~~lfY~Pl~ii~~~~~ilv~i~~~~~y~~~~---~~~s---d~~~~~~~~~~kL~~Y  207 (303)
T PF05462_consen  145 WCWIKPEWDV-------W----RFALFYIPLWIIIIISAILVGITMRYIYRVIR---NGVS---DNKDKHLKYQLKLVNY  207 (303)
T ss_pred             ceeecCCCcc-------h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cccc---hhHHHHHHHHHHHHHH
Confidence            7876433211       1    11233344332221    11111122222111   1111   1111112222234467


Q ss_pred             HHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHH-HHHhhhhhccC-chhHHhhcCCccccccc
Q psy9472         540 VVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHIL-RIMSSKIINSR-NANARRFHRPSTYSSTR  602 (647)
Q Consensus       540 ~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ns~-NPiI~~fr~~~~~~~~~  602 (647)
                      .++|++||.|..+-.+.+.++. .+  .  ...++ ..++-  +.-. |.++|++.++...+...
T Consensus       208 p~ifiicw~fa~INRI~~~~~~-~~--~--~l~~Lh~~~s~--lqGf~nsivy~~n~~~~~~~~~  265 (303)
T PF05462_consen  208 PLIFIICWIFATINRIYNFIGK-NP--F--WLSVLHVGFSP--LQGFFNSIVYGYNNSLMWRYLG  265 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC-Cc--h--HHHHHHHHHHH--HHHHHHHHHHHhCCHHHHHHHH
Confidence            8899999999999999887752 22  1  11111 11111  4445 88899988887555444

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.20  E-value=4.3e-11  Score=116.25  Aligned_cols=260  Identities=15%  Similarity=0.192  Sum_probs=156.5

Q ss_pred             HHHHHhhHHhhhhhhhcCC----CCCCccchhhHHHHHHHHHHhhcccceeeeee--ec--cccccccccccchhhhhhh
Q psy9472         315 VVGVLGNGTLVLIFINHKS----MRNVPNIYILSLALGDLLVILTCVPFTSTVYT--FE--SWPYGESICKISESTKDIS  386 (647)
Q Consensus       315 ~~g~~~N~~vl~~i~~~~~----l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~--~~--~~~~~~~~C~~~~~~~~~~  386 (647)
                      ++.++....+++.+.+.|+    .+++.+.++.+.+++|++..+...........  ..  ....++..-++.....+..
T Consensus         6 ~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~   85 (283)
T PF10323_consen    6 IVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYF   85 (283)
T ss_pred             eehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHH
Confidence            4556666777777776554    34677889999999999986543332221111  00  1112233345555566677


Q ss_pred             HHHHHHHHHHHHHhhhheeeccc-cccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeee
Q psy9472         387 VGVSVFTLTALSADRFFAIVDPL-RKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESC  465 (647)
Q Consensus       387 ~~~s~~~l~~ia~dRy~~i~~P~-~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  465 (647)
                      ..+-....+.+|++||.+|++|. +     ++...++.+...++++-|+.++++++|.+..... .++...+        
T Consensus        86 ~~~~~~gi~lls~nR~~ai~~P~~~-----~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~-~f~~~~~--------  151 (283)
T PF10323_consen   86 LYIQCIGIVLLSLNRYLAICFPTSR-----HTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDF-YFDNEEN--------  151 (283)
T ss_pred             HHHHHHhHHHHHHhhhheEEeecHH-----HhhhccccchhheeeeeehhhhhheeeeeccCce-eeecccc--------
Confidence            77888899999999999999999 6     6788899999999999999999999986543322 2221110        


Q ss_pred             ecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHHHhh
Q psy9472         466 YPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAM  545 (647)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~  545 (647)
                      ..   ...+...... ......+...+-.+..+++|..++..+||+.+   ...+..+++.++|.+.+.+..+.++++++
T Consensus       152 ~~---~~~d~~~~~~-~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k---~~s~~~s~~~~rE~~L~~~~~i~~~a~~~  224 (283)
T PF10323_consen  152 MS---LFVDPEFIQR-NFLIAFIFVSVTCVICIVCYGIIFIFIRKRNK---KKSKSSSRSRRREIRLAIQVFILFCAFFV  224 (283)
T ss_pred             ee---eecCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence            11   1111111112 22233344556677888999999999997764   22333556667888888888777776655


Q ss_pred             ccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhH-----HhhcCCcccc
Q psy9472         546 CFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANA-----RRFHRPSTYS  599 (647)
Q Consensus       546 ~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI-----~~fr~~~~~~  599 (647)
                      ... +.+........... +.......+...+..  ..|. ||+.     +.+|+++.++
T Consensus       225 ~~~-~~~~~~~~~~~~~~-~~~~~~r~~y~~~~~--~~s~inP~~LLi~n~~lr~~~~~~  280 (283)
T PF10323_consen  225 ILV-YYIFSNYFAQNFNT-DPIFYLRAFYPILNG--LLSFINPWMLLIFNKDLRKQVRRM  280 (283)
T ss_pred             HHH-HHHHHHHHHhcccc-hHHHHHHHHHHHHHH--HHHhhhhHHhhhccHHHHHHHHHH
Confidence            533 33333332322111 111111112222333  6777 9998     6666665443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.05  E-value=5e-10  Score=108.82  Aligned_cols=187  Identities=22%  Similarity=0.295  Sum_probs=121.8

Q ss_pred             Cccceehhhhccc-cccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCC
Q psy9472           1 LSADRFFAIVDPL-RKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYP   79 (647)
Q Consensus         1 isidRy~aI~~P~-~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~   79 (647)
                      +|++||.||++|. +     +.++.++.+...+++.-|+.++++++|.+...... +....+ ..    -..    +  .
T Consensus        96 ls~nR~~ai~~P~~~-----~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~-f~~~~~-~~----~~~----d--~  158 (283)
T PF10323_consen   96 LSLNRYLAICFPTSR-----HTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFY-FDNEEN-MS----LFV----D--P  158 (283)
T ss_pred             HHHhhhheEEeecHH-----HhhhccccchhheeeeeehhhhhheeeeeccCcee-eecccc-ee----eec----C--H
Confidence            5789999999999 5     55689999999999999999999999965433222 111111 00    000    0  0


Q ss_pred             CCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Q psy9472          80 NYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFL  159 (647)
Q Consensus        80 ~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~  159 (647)
                      ...... .........+-++..+++|..+...++++.+   ++.++..+..++|.+.+.+.++.++++++..+=+.. ..
T Consensus       159 ~~~~~~-~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k---~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~~~-~~  233 (283)
T PF10323_consen  159 EFIQRN-FLIAFIFVSVTCVICIVCYGIIFIFIRKRNK---KKSKSSSRSRRREIRLAIQVFILFCAFFVILVYYIF-SN  233 (283)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            011111 2223344556667888999999999987664   222334556678888888887777766554443333 32


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcc
Q psy9472         160 WFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFC  214 (647)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~  214 (647)
                      .......  .   +....+..+-.++.-..|.+||+.-.++|+++|+++++.++|
T Consensus       234 ~~~~~~~--~---~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~~  283 (283)
T PF10323_consen  234 YFAQNFN--T---DPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLKC  283 (283)
T ss_pred             HHHhccc--c---hHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcCC
Confidence            2222221  1   112344456667778899999999999999999999999887

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.97  E-value=1.2e-09  Score=104.79  Aligned_cols=176  Identities=16%  Similarity=0.225  Sum_probs=110.2

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      |++||++||+.|++     |++..+.+..........+++....+-    +.....++..      ..|.......+.  
T Consensus        82 i~iDr~iaV~~P~~-----Y~~~~~~~y~~~~~~~~~~~s~~~~~~----~~~~~~~~~~------~~C~pp~a~~~~--  144 (257)
T PF10320_consen   82 IAIDRLIAVCFPLR-----YRTISTRKYLIILLIFPVIYSIFFTVI----GFLYRDDETI------VICNPPLAFHGT--  144 (257)
T ss_pred             HHhhheeeEeehhh-----hhhcccccchhhHhHHHHHHHHHHHhh----eeEecCCccc------ccCCCccccCcc--
Confidence            58999999999999     667777775555555555555544332    2222221111      127654333221  


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW  160 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~  160 (647)
                      ....+...    ..++. +++++.|...+...+++.++          ..++++|..|.+...++.|+..|.-..+...+
T Consensus       145 ~~~~~~~~----~~~in-v~tvivY~i~~~~~~~k~~~----------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v  209 (257)
T PF10320_consen  145 ASQIWSYS----NIIIN-VITVIVYIITIIIFKRKSRS----------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTV  209 (257)
T ss_pred             HHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHccc----------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHH
Confidence            11122211    12222 33455666666655543221          23457889999999999999999877776665


Q ss_pred             HHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhh
Q psy9472         161 FYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYL  212 (647)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~  212 (647)
                      .......    .+....+.....++..++.+.|.++|.++|+|||+++++.+
T Consensus       210 ~~~~~~~----~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~  257 (257)
T PF10320_consen  210 SLALGLD----GETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF  257 (257)
T ss_pred             HHHhCCc----HHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence            5443322    22234566778899999999999999999999999999864

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=98.84  E-value=6.6e-08  Score=94.06  Aligned_cols=266  Identities=12%  Similarity=0.094  Sum_probs=154.3

Q ss_pred             hhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccc
Q psy9472         300 RLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKIS  379 (647)
Q Consensus       300 ~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~  379 (647)
                      ...+.++++.+.+.+++-.+..+..+.++.+++..|.+.+-++.-|++.|++...+.-...-...     ..|...|..-
T Consensus        29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~-----i~G~vfC~~P  103 (313)
T PF10321_consen   29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILA-----IFGAVFCSYP  103 (313)
T ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHH-----hcCccccCCc
Confidence            34556788888888888889999999999888877889999999999999999544322211111     1245566543


Q ss_pred             ------hhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHH--HHHHHHHhhhccchheeeee
Q psy9472         380 ------ESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAA--IWIFAILCAIPSMTLSYVRA  451 (647)
Q Consensus       380 ------~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~--~W~~~~~~~~~~~~~~~~~~  451 (647)
                            +.+...+-.++......++++|..-+..|..     .......++....+.+  +|.+-..+-.++..+.... 
T Consensus       104 ~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~-----~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~-  177 (313)
T PF10321_consen  104 RFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFK-----LKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEY-  177 (313)
T ss_pred             hHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchh-----hHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCc-
Confidence                  3344445567888888999999999998876     3334454554444333  3333333334544432111 


Q ss_pred             eecCCCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhh
Q psy9472         452 FKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKK  531 (647)
Q Consensus       452 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k  531 (647)
                                  .++..++..........|.-....+..++-.+.+.++|..+...++++.+...     ..+..+.+++
T Consensus       178 ------------~sw~fDP~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~-----s~~~~k~~~q  240 (313)
T PF10321_consen  178 ------------MSWFFDPMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYST-----SSQLSKAQRQ  240 (313)
T ss_pred             ------------ceEecCccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----chhhhhhhHH
Confidence                        12211111100001111222233444555567788899999999988755442     3445567778


Q ss_pred             hhHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHH-----hhcCCcccccccc
Q psy9472         532 VAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANAR-----RFHRPSTYSSTRK  603 (647)
Q Consensus       532 ~~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~-----~fr~~~~~~~~~~  603 (647)
                      ......++.+.+.+.++-|..+..   +..    + ...........-  +|+. +|+||     ..|+++.++..+|
T Consensus       241 I~iQs~iIC~f~~i~a~iyv~m~f---~~~----p-~~~i~~~~~~Wq--l~~g~~~iIYl~lNrtIR~~~~k~~~~k  308 (313)
T PF10321_consen  241 IFIQSVIICFFHAIAAVIYVYMQF---FPP----P-PWLIIIGQISWQ--LSHGCPPIIYLTLNRTIRNSVLKMLGPK  308 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHeeee---ecc----c-HHHHHHHHHHHh--ccCCccceEEEEECHHHHHHHHHHHccc
Confidence            777777777777665444332222   211    1 112222233333  7777 99994     4455544444433

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.81  E-value=1.4e-08  Score=98.95  Aligned_cols=182  Identities=11%  Similarity=0.090  Sum_probs=117.5

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhh-heeEeeccCCCCCc--cceeeecCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL-SYVRAFKDDTNNNT--LFESCYPFPPIDG   77 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~-~~~~~~~~~~~~~~--~~~~C~~~~~~~~   77 (647)
                      ||++|+.||..|.+     |+.+.+.+.+..+++++|++++....+..+. .-...+..+...-.  ..+.|.       
T Consensus        88 iaiNRf~ai~fP~~-----y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~-------  155 (274)
T PF10328_consen   88 IAINRFCAIFFPFK-----YKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCG-------  155 (274)
T ss_pred             HHHHHHheeeeHHH-----HHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccc-------
Confidence            68999999999999     7778999999999999999999776655442 11111111111000  000121       


Q ss_pred             CCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHH
Q psy9472          78 YPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFF  157 (647)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~  157 (647)
                            .+..........+-.+++..++..+..++++.+++...+.+++++++++|.+..+..+.-...|++.++-|...
T Consensus       156 ------~~~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~  229 (274)
T PF10328_consen  156 ------NYSWYFDFYKNFILVIISNILNIITFIKLRKFRKKISVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFI  229 (274)
T ss_pred             ------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  11111112223334456666777777777766655544444567778899999999999999999999887765


Q ss_pred             HHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHh
Q psy9472         158 FLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKY  211 (647)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~  211 (647)
                      .-+.      +..     ......+.+.-.+.-++|++|+...|+++|+..++.
T Consensus       230 ~~~~------~~~-----~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~  272 (274)
T PF10328_consen  230 PPLS------SNR-----WWQFFCTTFSWVLVHALDGLIMLIFNSEIRRKIRKK  272 (274)
T ss_pred             HHhc------ccc-----HHHHHHHHHHHHHHHHhcceeEeEEcHHHHHHHHhc
Confidence            4331      111     112223333344556789999999999999999874

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.65  E-value=1.2e-07  Score=89.01  Aligned_cols=218  Identities=16%  Similarity=0.155  Sum_probs=134.7

Q ss_pred             CCCccchhhHHHHHHHHHHhh-cccceeeeeeeccccccccccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccc
Q psy9472         335 RNVPNIYILSLALGDLLVILT-CVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLH  413 (647)
Q Consensus       335 ~~~~~~~l~~Lav~Dll~~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~  413 (647)
                      .+|.+..+.+||+++++..+. ++|.... ..... .+++..|++..+++-++-..|+.+.+++++---+.|. |-. ..
T Consensus         8 ~kp~dlIl~hLa~aN~lvLl~rGip~~~~-~~~~~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItIS-P~~-s~   83 (265)
T PF03402_consen    8 LKPIDLILIHLALANILVLLSRGIPQTMA-FFGWK-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITIS-PSN-SR   83 (265)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhHHHHHH-Hhhcc-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEe-cCC-ch
Confidence            579999999999999998543 3343222 11111 3589999999999999999999999999995444443 322 11


Q ss_pred             cCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHH
Q psy9472         414 SGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVP  493 (647)
Q Consensus       414 ~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip  493 (647)
                      |+.-+...++.....+...|++.+++.................+.......|.....+..    ..........+-=++.
T Consensus        84 w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~----~~~~~~~~~~~~D~~f  159 (265)
T PF03402_consen   84 WAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYI----VSSLFATLLSFRDVLF  159 (265)
T ss_pred             hhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchh----hhhhhhhHHHhhHHHH
Confidence            112223445566677888899988876543322211111111111122345754322211    1111122223333555


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCcc-cchhhhhHhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhC
Q psy9472         494 LLIIACFYSLMARSLILSTKNMPGEL-QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYIN  560 (647)
Q Consensus       494 ~~ii~~~y~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~~~  560 (647)
                      +.+|+..-..+...+.||+++.+.-. .....+...|.|+++++++.+..|++.+..-.++..+....
T Consensus       160 vgLM~~aSgyMV~~L~RH~q~VqhIhs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~  227 (265)
T PF03402_consen  160 VGLMIWASGYMVFLLYRHHQQVQHIHSSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSF  227 (265)
T ss_pred             HHHHHhhhhhheeeeeecccccccCcCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHh
Confidence            67888888888888887776554322 23344557889999999999999999999988876654443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.64  E-value=3.9e-07  Score=89.48  Aligned_cols=268  Identities=14%  Similarity=0.157  Sum_probs=153.4

Q ss_pred             HHHHHHHHHHHHhhHHhhhhhhhcCC-CCCCccchhhHHHHHHHHHHhhcccce---------eeeeeecc-cccccccc
Q psy9472         308 IVFAFIFVVGVLGNGTLVLIFINHKS-MRNVPNIYILSLALGDLLVILTCVPFT---------STVYTFES-WPYGESIC  376 (647)
Q Consensus       308 ~~~~~~~~~g~~~N~~vl~~i~~~~~-l~~~~~~~l~~Lav~Dll~~~~~~~~~---------~~~~~~~~-~~~~~~~C  376 (647)
                      +++.+.+.+|++.|.+.++.+.++.. .-+.-.+++.|-|++|++.++......         +.....|. -..|+..|
T Consensus         3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~GpC~~~~~~~C   82 (292)
T PF10317_consen    3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISYGPCRYFGPWFC   82 (292)
T ss_pred             EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEeeecceecCcHHH
Confidence            46778899999999999998877643 235677899999999999976543322         11111111 12467788


Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecC-
Q psy9472         377 KISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD-  455 (647)
Q Consensus       377 ~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~-  455 (647)
                      .....+...+...+.+++.+--.-||..+.++..          ++++....+.+.+..++...+...+.......... 
T Consensus        83 ~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~----------~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~  152 (292)
T PF10317_consen   83 FFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP----------SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAE  152 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----------chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHH
Confidence            8887788888888999999999999999976443          66677777777777777765544332211100000 


Q ss_pred             CCCCceeeeeecCCCCCCC---CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhh
Q psy9472         456 TNNNTLFESCYPFPPIDGY---PNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKV  532 (647)
Q Consensus       456 ~~~~~~~~~C~~~~~~~~~---~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~  532 (647)
                      .........-.+. ...+.   ......+......+..+...+++.++--+|.+.++++..++      .++..+..++.
T Consensus       153 ~~~~~p~y~~~~~-~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~~~~~------S~~tk~~h~~l  225 (292)
T PF10317_consen  153 LNQFHPEYNLENY-SISGFSDISSPPSLINILIMTIPIFPIPIVIFFLRRKILKFLNKKSSSM------SERTKSMHRQL  225 (292)
T ss_pred             HHHhCcccccccc-eeeeecchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhc------CHHHHHHHHHH
Confidence            0000000000000 00010   11111122222222222222334444555666665532222      34445677888


Q ss_pred             hHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhH-----HhhcCCcc
Q psy9472         533 AKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANA-----RRFHRPST  597 (647)
Q Consensus       533 ~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI-----~~fr~~~~  597 (647)
                      .|.+.+-.+.=+++..|.....++..+....... .+  +.......  +.+. ||++     .-+|+.+.
T Consensus       226 v~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~~~~~-~e--~~~~~~~~--~~~~~~P~itl~fv~PYR~~i~  291 (292)
T PF10317_consen  226 VKGLTIQALLPLFFYIPGVIIYFLSQFTGYEHPF-LE--YLIFMLAS--LPPLIDPLITLYFVRPYRKAIL  291 (292)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHhccccHH-HH--HHHHHHHH--HHHHhchHhheeeeHhHHHHhc
Confidence            9999999999999999888888887775543221 11  11222222  6667 9999     44565543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=98.55  E-value=9.5e-07  Score=80.41  Aligned_cols=165  Identities=13%  Similarity=0.083  Sum_probs=101.2

Q ss_pred             CCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchhhhhhhHHHHHHHHHHHHHhhhheeecccccc
Q psy9472         333 SMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKL  412 (647)
Q Consensus       333 ~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~  412 (647)
                      +++.-.+-++.||.++|++.++..+.........+.-..++..|...+++...+...+-+...+||++-|+.|.+|-...
T Consensus        31 r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~~  110 (201)
T PF11710_consen   31 RRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWKR  110 (201)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence            33455566999999999999876544333333334444567899999999999999999999999999999999992100


Q ss_pred             --ccCCCc--ccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeeecCCCCCCCCCcchhhhhhHHHH
Q psy9472         413 --HSGIGG--KRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLI  488 (647)
Q Consensus       413 --~~~~~~--~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~  488 (647)
                        .+..+.  ...+..+.....+.|++...++...   .      .+.........|.......       .+-+...-+
T Consensus       111 ~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~---~------~~~~Y~~~g~WCWi~~~~~-------~~Rl~l~y~  174 (201)
T PF11710_consen  111 KRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIG---L------GGPGYGPAGAWCWIPSRYE-------WYRLWLHYI  174 (201)
T ss_pred             ccccccccceEEeeeeeehHHHHHHHHHHHHHHhc---c------ccCcccccCcEEEECCCcH-------HHHHHHHHH
Confidence              000000  1122223333445555544443322   0      0111122346887543321       123333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9472         489 YYAVPLLIIACFYSLMARSLILSTK  513 (647)
Q Consensus       489 ~~~ip~~ii~~~y~~i~~~l~~~~~  513 (647)
                      .-.+-...+++.|..|+..+||+.|
T Consensus       175 ~~~~~~~~~i~iY~~if~~lrr~~~  199 (201)
T PF11710_consen  175 WRFIIIFAIIIIYIAIFFYLRRRIR  199 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            5556677888999999999998754

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=98.37  E-value=4.2e-06  Score=82.11  Aligned_cols=123  Identities=20%  Similarity=0.288  Sum_probs=91.8

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcch-hHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q psy9472          85 VIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQG-QTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYI  163 (647)
Q Consensus        85 ~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~  163 (647)
                      +......+...+|+.+++.+...+...++||.|+.+.+..+ +..+.+...|+.|++....+.|+++++-..+.......
T Consensus       180 ~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~~~~~~~~~  259 (303)
T PF05296_consen  180 YFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYIIYFLSLILSFLSFFF  259 (303)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444457789999999999999999999998888765433 44566677899999988888888776654432222222


Q ss_pred             cCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccc
Q psy9472         164 NPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKM  216 (647)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~  216 (647)
                      ..   .      .....+........+...|++-.+-|+++|+++++.++|.+
T Consensus       260 ~~---~------~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~k  303 (303)
T PF05296_consen  260 PE---N------SIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCLK  303 (303)
T ss_pred             cc---c------cHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence            11   1      12345677788999999999999999999999999998754

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=98.22  E-value=0.00025  Score=68.43  Aligned_cols=185  Identities=16%  Similarity=0.236  Sum_probs=103.0

Q ss_pred             cchhhHHHHHHHHHHhhcccceeeeeeeccc-----------cccccccccchhhhhhhHHHHHHHHHHHHHhhhheeec
Q psy9472         339 NIYILSLALGDLLVILTCVPFTSTVYTFESW-----------PYGESICKISESTKDISVGVSVFTLTALSADRFFAIVD  407 (647)
Q Consensus       339 ~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~-----------~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~  407 (647)
                      .-.+..||+||++.++-.+.-...+....+.           ......|.....-..++..++-+-+.+-|+|=|+.+.+
T Consensus        68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~  147 (405)
T PF02101_consen   68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR  147 (405)
T ss_pred             chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence            4688999999999976544433322222111           01235788877777778888889999999999998854


Q ss_pred             cccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeeecCCCCCCCCCcchhhhhhHHH
Q psy9472         408 PLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFL  487 (647)
Q Consensus       408 P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~  487 (647)
                      .-           .+......-+.+|..+.++..--....+.   +..       ..|......      .    +- --
T Consensus       148 ~a-----------g~~~~~lYH~~aWgl~~lL~~~Gl~~Ly~---Ps~-------~~Ce~~l~~------a----lp-hY  195 (405)
T PF02101_consen  148 SA-----------GRSTIWLYHMMAWGLPALLCAEGLAMLYY---PSI-------SRCESGLEH------A----LP-HY  195 (405)
T ss_pred             cC-----------CCcchhHHHHHHHHHHHHHHHhccceeec---CCH-------Hhhhhhhhh------c----ch-hH
Confidence            22           12334566788899988876543332221   111       134321110      0    11 11


Q ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHHHhhccccHHHHHHHH
Q psy9472         488 IYYAVPLLIIAC----FYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWF  557 (647)
Q Consensus       488 ~~~~ip~~ii~~----~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~i~~~~~  557 (647)
                      +...+|+++.++    +|.+..+++-+.-+.+.+.-  ..++++.....-+-++.|.++|.+||+|..+-.++.
T Consensus       196 vttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~y--T~~ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL  267 (405)
T PF02101_consen  196 VTTYIPLLLVLVANPILYIKAVRAVASLLKGRQGIY--TENERRLGAQIKIKFFKIMLVFYICWLPNIINGSLL  267 (405)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc--cHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHH
Confidence            223345554444    45555444444333322211  111222223344557788999999999999876644

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.15  E-value=1.5e-05  Score=79.34  Aligned_cols=268  Identities=13%  Similarity=0.180  Sum_probs=150.0

Q ss_pred             HHHHHHHHHHhhHHhhhhhhhcCCC-CCCccchhhHHHHHHHHHHhhcc---ccee------eeee-ecccccccccccc
Q psy9472         310 FAFIFVVGVLGNGTLVLIFINHKSM-RNVPNIYILSLALGDLLVILTCV---PFTS------TVYT-FESWPYGESICKI  378 (647)
Q Consensus       310 ~~~~~~~g~~~N~~vl~~i~~~~~l-~~~~~~~l~~Lav~Dll~~~~~~---~~~~------~~~~-~~~~~~~~~~C~~  378 (647)
                      --+.++++++.|++.++.+.++.+. -..-.+++...|+.|++.+++-.   |..-      .... .+.+..+.....+
T Consensus         5 ~~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (307)
T PF10326_consen    5 QYIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQI   84 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheee
Confidence            3456788999999999988755433 34556788889999999876543   3211      1111 1233344455666


Q ss_pred             chhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecC---
Q psy9472         379 SESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD---  455 (647)
Q Consensus       379 ~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~---  455 (647)
                      ...++..+...++..++.-=+.||.++++|.+     . +..+.++.....+..-+.++.+.....+.....+..++   
T Consensus        85 l~~~y~~~f~~~~~llaihFiYRY~av~~~~~-----l-~~f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr  158 (307)
T PF10326_consen   85 LLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKK-----L-RYFSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLR  158 (307)
T ss_pred             hhhhhhhhHHHHHHHHHhHhhhheeeeccchh-----h-ccccccceeeeehhhhhhcccceEEEeehhccchhhhhhhc
Confidence            66667777777777888888999999999987     2 22333333333333333333333322221111110000   


Q ss_pred             --------CCCCc-eeeeeecC-CCCCCC--CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchh
Q psy9472         456 --------TNNNT-LFESCYPF-PPIDGY--PNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQT  523 (647)
Q Consensus       456 --------~~~~~-~~~~C~~~-~~~~~~--~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~  523 (647)
                              .+.++ ........ .+.++.  ..+..............+.+.++++|-.++++++++..+..      .+
T Consensus       159 ~~~~~~y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~------S~  232 (307)
T PF10326_consen  159 EELLENYGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM------SS  232 (307)
T ss_pred             cccccccCCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc------Ch
Confidence                    00000 00011111 011221  33444444555566677888999999999999995443321      22


Q ss_pred             hhhHhhhhhhHHHHHHHH-HHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhh-hccC-chhH-----HhhcCC
Q psy9472         524 RQIRARKKVAKTVLTFVV-VFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKI-INSR-NANA-----RRFHRP  595 (647)
Q Consensus       524 ~~~~~~~k~~~~~~~i~~-~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ns~-NPiI-----~~fr~~  595 (647)
                      +..+-+++..+.+.+-++ -.++...|..+......++.+.....       ..+...+ +-++ ||++     +++|++
T Consensus       233 ~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~~~~~~-------~~~~~~~~~yP~iDpl~~i~~ik~yR~~  305 (307)
T PF10326_consen  233 KTRKLQKQLFKALVIQTIIPFIFMYIPVFIVFILPFFGIDLGFFS-------NIISILISLYPAIDPLPVIFIIKDYRKA  305 (307)
T ss_pred             hhHHHHHHHHHHHHHHhhhhheeeecchhheeeeeccCCCCCccc-------cHhhhhEEEEeehhhheeeEeeHHHHHh
Confidence            333555666666655544 46677899998888777664433221       1122222 6677 9987     888887


Q ss_pred             c
Q psy9472         596 S  596 (647)
Q Consensus       596 ~  596 (647)
                      .
T Consensus       306 i  306 (307)
T PF10326_consen  306 I  306 (307)
T ss_pred             h
Confidence            5

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.08  E-value=0.00011  Score=73.23  Aligned_cols=241  Identities=12%  Similarity=0.094  Sum_probs=135.4

Q ss_pred             hHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccce---eeeee--ec--cccccccc
Q psy9472         303 TYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFT---STVYT--FE--SWPYGESI  375 (647)
Q Consensus       303 ~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~---~~~~~--~~--~~~~~~~~  375 (647)
                      ......+-.+++++|++.++..++.+..++..+....+++....++.++.++.-+...   +..+.  .+  +...+...
T Consensus        16 l~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~   95 (324)
T PF10292_consen   16 LRLSLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYR   95 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhH
Confidence            3455666777888888888888888877777777777888888888888865322211   11111  11  22345667


Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecC
Q psy9472         376 CKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD  455 (647)
Q Consensus       376 C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~  455 (647)
                      |.+......++...+..+..++++||++|.++.-+     |... ++.....+..+-|++++......+...   +.   
T Consensus        96 C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~-----YE~~-~~~~Gi~l~~~qi~is~~~~~~~~~~~---~~---  163 (324)
T PF10292_consen   96 CFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKS-----YEKS-GKWLGILLAFFQILISLLILYFVYSDE---DF---  163 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----hcCC-CccHHHHHHHHHHHHHHHHHHHHHhhh---hc---
Confidence            88888899999999999999999999999999888     5544 223333444444555554332221111   11   


Q ss_pred             CCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHH
Q psy9472         456 TNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKT  535 (647)
Q Consensus       456 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~  535 (647)
                        .+.....|....+..+   ..........++..++    ..+.+..++++=+|.+++.....-.++-+.++..|..++
T Consensus       164 --~~~~~~yC~~~~~~~~---~~~~~~~~~~~~~~i~----~~i~f~~L~~~Nkk~r~~~~~~~LS~RYQl~ENl~slr~  234 (324)
T PF10292_consen  164 --PNERMYYCQASSSSSP---YRVNIPFIVILVLQIL----ALILFRYLLRKNKKLRKQQKHSTLSERYQLEENLRSLRL  234 (324)
T ss_pred             --cCccceeeEEecCCCc---hhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccCCCcchHHhHHhHHHHHHH
Confidence              1233456876544422   1111111111111111    122233333333332222222223345566777888888


Q ss_pred             HHHHHHHHhhccccHHHHHHHHH-hCCCCC
Q psy9472         536 VLTFVVVFAMCFFPQHFFFLWFY-INPTAP  564 (647)
Q Consensus       536 ~~~i~~~f~~~w~P~~i~~~~~~-~~~~~~  564 (647)
                      +...+.+..+.-..+.+..+... +.+..+
T Consensus       235 L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~  264 (324)
T PF10292_consen  235 LKPFIILSSIFIFFYIFASIFLRLFNPSMS  264 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            77777776666666555544433 443333

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.07  E-value=5.8e-05  Score=74.15  Aligned_cols=267  Identities=12%  Similarity=0.051  Sum_probs=150.4

Q ss_pred             HhHHHHHHHHHHHHHHhhHHhhhhhhhc-CCCCCCccchh---hHHHHHHHHHHhhcccceeeeeeecccccc------c
Q psy9472         304 YLVPIVFAFIFVVGVLGNGTLVLIFINH-KSMRNVPNIYI---LSLALGDLLVILTCVPFTSTVYTFESWPYG------E  373 (647)
Q Consensus       304 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~-~~l~~~~~~~l---~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~------~  373 (647)
                      .++...+-++++++++.|.+.++.+..+ +++.+-.++++   +...++|+-.+++.-|..+.....+. ..|      +
T Consensus         9 ~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy-~~G~l~~~f~   87 (303)
T PF10327_consen    9 QWLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGY-CVGFLARYFG   87 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEE-EEeehhhcCC
Confidence            3567788889999999999999987654 44444333332   34677899998888887665544332 111      1


Q ss_pred             cccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeee
Q psy9472         374 SICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFK  453 (647)
Q Consensus       374 ~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~  453 (647)
                      ..++....+..+....-+-.++.--+-|+.+|.+..+.      ...++........+..+..+....... ..+..+.+
T Consensus        88 i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~------~~l~~~~~~~~~~~~~~~p~~~~~~~~-~~~~s~ee  160 (303)
T PF10327_consen   88 ISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSK------HVLPKWFYIFFYFFCILFPFFIFICFY-FSGMSREE  160 (303)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------CcCcHHHHHHHhhHHHHHHHHHHHHHH-hcCCCHHH
Confidence            23333333444444455555666678899999988772      223444434444444444444433221 11111111


Q ss_pred             cCCCCCceeeeeecCC-CCCCC----CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHh
Q psy9472         454 DDTNNNTLFESCYPFP-PIDGY----PNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRA  528 (647)
Q Consensus       454 ~~~~~~~~~~~C~~~~-~~~~~----~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~  528 (647)
                      .........+.|.... ..++.    .+..........+.....-.++..+++..+++.+++.+++.      .++.-++
T Consensus       161 q~~yI~~nyP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~i------S~~ty~k  234 (303)
T PF10327_consen  161 QMEYIRENYPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKI------SKQTYQK  234 (303)
T ss_pred             HHHHHHhhCCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CHHHHHH
Confidence            1111122334444332 11110    11112222333344455667778888899999888765543      3456678


Q ss_pred             hhhhhHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhH
Q psy9472         529 RKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANA  589 (647)
Q Consensus       529 ~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI  589 (647)
                      ++++.+.+.+-.++-.+|-+|..+..+.-.+..+..  .... .....+..  .+|. |-++
T Consensus       235 Hk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~~~~~--q~i~-~~~~~~f~--~HS~~n~iv  291 (303)
T PF10327_consen  235 HKEAVRSLIAQFATSSICILPPFIFVVVVIFEFEDA--QVIS-EICLAIFS--SHSSVNMIV  291 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhheecCCCc--HHHH-HHHHHHHH--HhhHhhhee
Confidence            889999999999999999999988777666543322  1222 22222221  7777 8777

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity

Probab=98.04  E-value=0.00028  Score=64.75  Aligned_cols=236  Identities=13%  Similarity=0.198  Sum_probs=139.7

Q ss_pred             hhhHhHHHHHHHHHHHHHHhhHHhhh--hhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeee----eeecccccccc
Q psy9472         301 LETYLVPIVFAFIFVVGVLGNGTLVL--IFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTV----YTFESWPYGES  374 (647)
Q Consensus       301 ~~~~~~~~~~~~~~~~g~~~N~~vl~--~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~----~~~~~~~~~~~  374 (647)
                      ...+.....+.+..+.+.+.++..++  ++.-+.-.+-+..+++..|.++-++.+.+.+...+..    ....+. ..+.
T Consensus        10 ~~yy~vi~~Fv~st~~stlLt~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~-~~s~   88 (305)
T PF04789_consen   10 GLYYFVISLFVLSTIASTLLTGAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEF-VQSE   88 (305)
T ss_pred             cEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHH-hccc
Confidence            34445555566666666666654333  2222222234567899999999999876554443322    222222 2344


Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeec
Q psy9472         375 ICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKD  454 (647)
Q Consensus       375 ~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~  454 (647)
                      .-.+..+...++.++-.++-..||++|....-.--.     -.+........+.+..+|++++..-....-  ....+..
T Consensus        89 ~f~~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~~-----t~~~F~s~~iyiWL~~vWils~~v~~~l~~--~nC~Y~y  161 (305)
T PF04789_consen   89 LFIFMSYLIDFCHYSILFSNLVIAIQRFFVFFFRNL-----TDKVFESPVIYIWLLLVWILSIGVVYSLMS--NNCRYRY  161 (305)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhheeeeehhh-----hhhhccchHHHHHHHHHHHHHHHHHHHHHh--CCCeeec
Confidence            556677888899999999999999999877763222     223444566777888899999887654432  3333334


Q ss_pred             CCCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhH
Q psy9472         455 DTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAK  534 (647)
Q Consensus       455 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~  534 (647)
                      +....+..-.|.......+ .......-+...++.+.+|+.+. +.|+.+..++...++         ...++.|.+.+|
T Consensus       162 ~~~~~~y~L~C~~~~~~v~-~~~P~~IqiiE~ilQ~~IPi~Il-~iYiAIIiKI~~MKk---------ssLnK~Ei~ILK  230 (305)
T PF04789_consen  162 NKWSKHYQLNCETCNSVVD-ISPPRGIQIIEIILQFGIPIFIL-VIYIAIIIKIIKMKK---------SSLNKNEITILK  230 (305)
T ss_pred             ccccccEEEEcCCCCeeEe-eCCCCchhHHHHHHHHhHHHHHH-HHHHHHHHHHHHHhh---------ccCCchhHHHHH
Confidence            4444566667875522111 22233445577888999997654 556665555543322         233456788888


Q ss_pred             HHHHHHHHHhhccccHHHHHHHHH
Q psy9472         535 TVLTFVVVFAMCFFPQHFFFLWFY  558 (647)
Q Consensus       535 ~~~~i~~~f~~~w~P~~i~~~~~~  558 (647)
                      .-..+.+.|-.   +..+..+...
T Consensus       231 QAifIFvlFQ~---ss~VFl~~qt  251 (305)
T PF04789_consen  231 QAIFIFVLFQA---SSCVFLLCQT  251 (305)
T ss_pred             HHHHHHHHHHH---HHHHHHhhee
Confidence            87766665544   4444444333

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.03  E-value=9.7e-05  Score=72.29  Aligned_cols=211  Identities=11%  Similarity=0.056  Sum_probs=117.7

Q ss_pred             HHHHHHhhHHhhhhhhhcCC--C-CCCccchhhHHHHHHHHHHhhcccc-eeeeeeec------c-ccccccccccchhh
Q psy9472         314 FVVGVLGNGTLVLIFINHKS--M-RNVPNIYILSLALGDLLVILTCVPF-TSTVYTFE------S-WPYGESICKISEST  382 (647)
Q Consensus       314 ~~~g~~~N~~vl~~i~~~~~--l-~~~~~~~l~~Lav~Dll~~~~~~~~-~~~~~~~~------~-~~~~~~~C~~~~~~  382 (647)
                      ++.+++.+..+++++.++++  . +++.+.+...-++.|++.-+...+. -+......      . ....+....+..++
T Consensus         8 gi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~l   87 (275)
T PF02118_consen    8 GIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYFL   87 (275)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHHH
Confidence            45677788888888888776  3 5566666666666666663332221 11111000      0 11234455666777


Q ss_pred             hhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCcee
Q psy9472         383 KDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLF  462 (647)
Q Consensus       383 ~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (647)
                      .+.+..+-..+.+.++++|+-++..|.+     +++..++ .....++++.++++....+.+.........++    ...
T Consensus        88 ~~~~~~~Q~~~~~~is~nR~t~v~~p~~-----~~~~W~~-~~~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~----~~~  157 (275)
T PF02118_consen   88 QYYFAYVQYLSTILISLNRFTSVLFPIR-----YEKFWKR-YYWIIIIIIFLLPFSFTWNIFISPTYVVYDNG----GFS  157 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHh-----hhHHHHh-hhhhheeeeeehhHHHHHHHHccccEEEEECC----ceE
Confidence            7888888999999999999999999999     5555553 33445555565665554444433333333322    111


Q ss_pred             eeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHH
Q psy9472         463 ESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVV  542 (647)
Q Consensus       463 ~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~  542 (647)
                      ....+..        ..........+.+++-.++.++++....+++++.+          ++..+.|++..+......++
T Consensus       158 ~~~~~~~--------~~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~----------~~~~~~er~L~~is~~~~~~  219 (275)
T PF02118_consen  158 YSYNDTV--------SWASLSIFSLIYFIIIIIITIITNIITYRRLRKLS----------KRIKSVERNLTIISFIISFV  219 (275)
T ss_pred             EEEEecc--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhhhHHHHHHHHHHHHHHHH
Confidence            1111100        01111122334445555566677777777777642          22334566777776666666


Q ss_pred             HhhccccHHH
Q psy9472         543 FAMCFFPQHF  552 (647)
Q Consensus       543 f~~~w~P~~i  552 (647)
                      +++.-....+
T Consensus       220 ~~~~~~~~~~  229 (275)
T PF02118_consen  220 QLLIAIWQII  229 (275)
T ss_pred             HHHHHHHHHH
Confidence            6655444444

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=98.01  E-value=1.3e-05  Score=78.18  Aligned_cols=182  Identities=15%  Similarity=0.136  Sum_probs=107.1

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHH---hhhchHhhheeEeeccCCCCCccceeeecCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAIL---CAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDG   77 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~   77 (647)
                      ++++|..-+..|....     .....++...++.+..++++.   ++-|..+.....              ++...+...
T Consensus       127 LainR~~~l~~~~~~~-----~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~~--------------sw~fDP~i~  187 (313)
T PF10321_consen  127 LAINRCCELNFPFKLK-----FLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEYM--------------SWFFDPMIF  187 (313)
T ss_pred             HHHHHHHHHhcchhhH-----HhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCcc--------------eEecCcccc
Confidence            4688998888887622     244556655555554444433   332333221111              111111110


Q ss_pred             CCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHH
Q psy9472          78 YPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFF  157 (647)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~  157 (647)
                      .......|.-......-++-.+.+.++|..+...++++.+...     +.+..+.+++..-...++.+...+.++=|...
T Consensus       188 ~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~-----s~~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m  262 (313)
T PF10321_consen  188 EGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYST-----SSQLSKAQRQIFIQSVIICFFHAIAAVIYVYM  262 (313)
T ss_pred             CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----chhhhhhhHHHHHHHHHHHHHHHHHHHHHHee
Confidence            0000122333333333445556788888888888876644432     33445567788888888877777766655443


Q ss_pred             HHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccccc
Q psy9472         158 FLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSS  218 (647)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~  218 (647)
                      ...    ..  .      +++..++.+.-.+++..+|+||..+|+..|++++++++.++.+
T Consensus       263 ~f~----~~--p------~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k~~r  311 (313)
T PF10321_consen  263 QFF----PP--P------PWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPKKIR  311 (313)
T ss_pred             eee----cc--c------HHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHcccccc
Confidence            321    11  1      3455677778889999999999999999999999999865443

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>KOG4193|consensus

Probab=97.83  E-value=0.00025  Score=75.28  Aligned_cols=250  Identities=12%  Similarity=0.083  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecccccc-cc-ccccchhhhhhh
Q psy9472         309 VFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYG-ES-ICKISESTKDIS  386 (647)
Q Consensus       309 ~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~-~~-~C~~~~~~~~~~  386 (647)
                      +...+.++.++.-+++-+.   -+++++..+....||+++=++.-++ .       +.+.|..+ .. .|....++..++
T Consensus       328 VG~~iSlvcL~lti~ty~~---~~~l~~~~~~i~~~l~~~L~l~~l~-f-------L~~~~~~~~~~~~C~~~a~llhff  396 (610)
T KOG4193|consen  328 VGCIISLVCLLLTIATYLL---FRKLQNDRTKIHINLCLCLFLAELL-F-------LLGIDRTSTSVVLCIAAAILLHFF  396 (610)
T ss_pred             hhhHHHHHHHHHHHHHHHH---HHHHHhhcchhHHHHHHHHHHHHHH-H-------hcccccccCcccccHHHHHHHHHH
Confidence            3334444444433333333   3334433377777888773333221 1       11222222 22 799999999999


Q ss_pred             HHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeee
Q psy9472         387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCY  466 (647)
Q Consensus       387 ~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~  466 (647)
                      ..+..+-+.+++++=|+.++.-++        ...+++.....+..|..+.++...........+.     .......|+
T Consensus       397 ~LaaF~Wm~leg~hl~~~~v~vf~--------~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~-----~~~~~~~CW  463 (610)
T KOG4193|consen  397 FLAAFFWMLLEGFHLYLLLVEVFR--------SRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEG-----QYGTPRVCW  463 (610)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc--------cccchHHHHHHHHHhhhhHHHHhheeEEeccCcc-----ccccCCceE
Confidence            999999999999999996655443        4566666666679999998887665443332211     111112387


Q ss_pred             cCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHHHhh
Q psy9472         467 PFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSL-ILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAM  545 (647)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l-~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~  545 (647)
                      ...+..-        .+     .|+.|+.+++.+++.++... ++-.++.....+  ..+..+..+..+..+.++.+.-+
T Consensus       464 l~~~~~~--------~~-----~F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~L~~lLGl  528 (610)
T KOG4193|consen  464 LDTQNGF--------IW-----SFLGPVTLIILVNIVMFVVTLKKLLRRLSKLQP--IASKLENISLIRSALALLFLLGL  528 (610)
T ss_pred             EecCCce--------EE-----EEehHHHHHHHHHHHHHHHHHHHHhhcccccCc--chhhHHHHHHHHHHHHHHHHHHH
Confidence            6543321        11     16677777777775554432 222221111111  11111222667777777777777


Q ss_pred             ccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhH---HhhcCCccccccccccCCCCC
Q psy9472         546 CFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANA---RRFHRPSTYSSTRKWDSVSTT  610 (647)
Q Consensus       546 ~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI---~~fr~~~~~~~~~~~~~~~~~  610 (647)
                      .|.-    .++....+.     ..  .+..+...  +|+. --+|   +..+++-.|...+++.++.+.
T Consensus       529 TW~f----gi~s~~~~~-----~~--v~~YlFti--~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~~  584 (610)
T KOG4193|consen  529 TWIF----GIFSWLPGT-----SV--VFAYLFTI--FNALQGVFIFIFHCLLRKKVRKEYRKWLCCGRG  584 (610)
T ss_pred             HHHH----HHHHHhccc-----ch--HHHHHHHH--HHHhhhhHhhHhhhhhhHHHHHHHHHHhcccCC
Confidence            7753    222222211     11  12222333  8888 7666   555666666666666654433

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.77  E-value=0.001  Score=63.52  Aligned_cols=107  Identities=13%  Similarity=0.005  Sum_probs=70.8

Q ss_pred             HhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecccccccc----ccccc
Q psy9472         304 YLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGES----ICKIS  379 (647)
Q Consensus       304 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~----~C~~~  379 (647)
                      .+...+..+...+....|...++.+...|+.+++--.++---.+.|.+.+....+........ .+.....    .=-+.
T Consensus         6 ~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~if~~   84 (273)
T PF10316_consen    6 IIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILF-SLFPEFLDYKNLIFYI   84 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHH-HhChhhhccccEEeeh
Confidence            455667777788888999999999887777445555666678999999987765543322221 1211111    11112


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhhheeeccccc
Q psy9472         380 ESTKDISVGVSVFTLTALSADRFFAIVDPLRK  411 (647)
Q Consensus       380 ~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~  411 (647)
                      +................||+||.+|+..|..|
T Consensus        85 ~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y  116 (273)
T PF10316_consen   85 GWPSSNLGSIRSILALIIALDRVFAVYFPIFY  116 (273)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            22333445667788899999999999999993

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.77  E-value=9.6e-06  Score=77.64  Aligned_cols=202  Identities=14%  Similarity=0.183  Sum_probs=1.6

Q ss_pred             HHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchhhhhhhHHHHH
Q psy9472         312 FIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSV  391 (647)
Q Consensus       312 ~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~  391 (647)
                      +-..+++++-.+++..+...|++|+..+....||++++++..+..+.. ......+.....+..|.....+...+..++.
T Consensus         9 vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy~~la~f   87 (242)
T PF00002_consen    9 VGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHYFFLASF   87 (242)
T ss_dssp             HHHH----------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHHHHHHHH
Confidence            333444445445555555557777777888899999999886543222 1111111111112359999999999999999


Q ss_pred             HHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeeecCCCC
Q psy9472         392 FTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPI  471 (647)
Q Consensus       392 ~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~  471 (647)
                      .-+.+.+++-|..+..+..         ..+++.....+..|.++.++........ ...+        ....|+...+.
T Consensus        88 ~Wm~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~gwg~P~~iv~i~~~~~-~~~y--------~~~~CWl~~~~  149 (242)
T PF00002_consen   88 FWMLVEAFYLYRLLVKVFN---------SSRRRFWWYYLIGWGIPALIVVISVAVN-SDGY--------GNDNCWLSNDW  149 (242)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhheeEEEeec---------ccchhhheeeeeeecCcceeeeeeeeec-cccc--------ccccccccCCC
Confidence            9999999999999988754         2345566677888999988877665443 1111        11356432211


Q ss_pred             CCCCCcchhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCCCCcccchhhhhHhhh-hhhHHHHHHHHHHhhc
Q psy9472         472 DGYPNYPRTVIIMRFLIYYAVPLLIIACFY----SLMARSLILSTKNMPGELQGQTRQIRARK-KVAKTVLTFVVVFAMC  546 (647)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y----~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-k~~~~~~~i~~~f~~~  546 (647)
                       +            ....+..|.++++..+    ..+.++++++.++.      +..+.++.+ +..+....+...+-++
T Consensus       150 -~------------~~~~f~~P~~~~l~in~vi~~~v~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~L~~llg~~  210 (242)
T PF00002_consen  150 -G------------FIWAFVGPVLIILLINIVIFILVLRVLVRKSRSS------DKSEKKKRRKKILRASLILLPLLGIT  210 (242)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -c------------eEEEEEecccceecccchhheeeEEeehhhhhhh------hhhhccchhhhHHHHHHHHHHHHHHH
Confidence             1            0122445555554444    33444444332211      111122222 3677777778888888


Q ss_pred             cccHH
Q psy9472         547 FFPQH  551 (647)
Q Consensus       547 w~P~~  551 (647)
                      |....
T Consensus       211 w~~~~  215 (242)
T PF00002_consen  211 WLFGI  215 (242)
T ss_dssp             -----
T ss_pred             heeee
Confidence            88743

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=97.66  E-value=0.00056  Score=66.51  Aligned_cols=73  Identities=12%  Similarity=0.361  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccccccc
Q psy9472         140 VLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSK  219 (647)
Q Consensus       140 ~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~  219 (647)
                      +..=.++|++||+|-.+..+.+.+++. +       .++..+-..++.+.=.+|.++|++-++-.++.+...++|...+.
T Consensus       204 L~~Yp~ifiicw~fa~INRI~~~~~~~-~-------~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~~~~~~  275 (303)
T PF05462_consen  204 LVNYPLIFIICWIFATINRIYNFIGKN-P-------FWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILCQFTKF  275 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC-c-------hHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch
Confidence            446788899999999999998877532 1       22333444566667789999999999998988887776655444


Q ss_pred             c
Q psy9472         220 I  220 (647)
Q Consensus       220 ~  220 (647)
                      .
T Consensus       276 ~  276 (303)
T PF05462_consen  276 G  276 (303)
T ss_pred             h
Confidence            3

>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.10  E-value=0.043  Score=52.70  Aligned_cols=102  Identities=11%  Similarity=0.083  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHhhHHhhhhhhhcCCCC-CCccchhhHHHHHHHHHHhhcc--cceeee-------eeecccccccccccc
Q psy9472         309 VFAFIFVVGVLGNGTLVLIFINHKSMR-NVPNIYILSLALGDLLVILTCV--PFTSTV-------YTFESWPYGESICKI  378 (647)
Q Consensus       309 ~~~~~~~~g~~~N~~vl~~i~~~~~l~-~~~~~~l~~Lav~Dll~~~~~~--~~~~~~-------~~~~~~~~~~~~C~~  378 (647)
                      +--+.++++.+.|-+-++.+...|+.+ ..-.++++.-|+-|++.++.-+  |..+..       ...++|-.+...-..
T Consensus        10 ~Pk~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~   89 (310)
T PF10319_consen   10 IPKIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQ   89 (310)
T ss_pred             HHHHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHH
Confidence            334566788889999999988877765 3555789999999999876443  433221       122333222111111


Q ss_pred             chhhhhhh-HHHHHHHHHHHHHhhhheeecccc
Q psy9472         379 SESTKDIS-VGVSVFTLTALSADRFFAIVDPLR  410 (647)
Q Consensus       379 ~~~~~~~~-~~~s~~~l~~ia~dRy~~i~~P~~  410 (647)
                      .......+ ...|=..|..==+.||+++++|..
T Consensus        90 ~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~  122 (310)
T PF10319_consen   90 HLLSIRCSFISGSYAILHIHFVYRYLVLFNSKF  122 (310)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHH
Confidence            11111111 222223333444899999999866

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].

>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.05  E-value=0.025  Score=56.32  Aligned_cols=232  Identities=14%  Similarity=0.146  Sum_probs=123.0

Q ss_pred             hhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCcc-chhhHHHHHHHHHHhhcccceee------eeeec--cccc
Q psy9472         301 LETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPN-IYILSLALGDLLVILTCVPFTST------VYTFE--SWPY  371 (647)
Q Consensus       301 ~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~-~~l~~Lav~Dll~~~~~~~~~~~------~~~~~--~~~~  371 (647)
                      ....+..++..++.++++++....+-.++++.-..+.+. +++.+|..+++=.... ....+.      ....+  +..+
T Consensus        18 ~~~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y-~~~~~~~lyrsf~~~~dpC~i~f   96 (328)
T PF02117_consen   18 WNFRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISY-AIIQIWSLYRSFFYSDDPCSILF   96 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCeeeEe
Confidence            334456667777788888888888888877776666554 5566777666654222 111110      11111  2345


Q ss_pred             cccccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeee
Q psy9472         372 GESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRA  451 (647)
Q Consensus       372 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~  451 (647)
                      .+..|.....+..++....++.-.++.+||.+|-..|-.     |+ +.+......+.+.+-+.++...  .+     ..
T Consensus        97 ~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~-----~~-~~~~~~g~~l~i~~li~s~~~~--~~-----i~  163 (328)
T PF02117_consen   97 TSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKY-----YS-KKSYIIGIILSILVLILSFITG--FI-----IY  163 (328)
T ss_pred             ecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhh-----hh-hhhHHHHHHHHHHHHHHHHHHe--eE-----EE
Confidence            567899888888999889999999999999999988865     22 1121121112222222222211  11     11


Q ss_pred             eecCCCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhh
Q psy9472         452 FKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKK  531 (647)
Q Consensus       452 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k  531 (647)
                      . ++ +..+....|...+....     ...... ..+.+++.+. -++....+++.-+|+.++.. =.-+.+-+.++...
T Consensus       164 ~-~~-p~~gyv~~C~~~p~~s~-----~~~~~~-~~~~~~l~i~-~~i~s~~l~~~nkk~e~~~~-f~v~~Ry~~~Eni~  233 (328)
T PF02117_consen  164 W-DD-PLDGYVPSCFYPPKNSV-----NRFNIF-LIVCFVLTIF-NLIVSIFLMYYNKKKEKKTR-FDVNSRYQKRENIN  233 (328)
T ss_pred             e-CC-CCccccccccCCChhHH-----HHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHhcccC-CcHHHHHHHHHHHH
Confidence            1 11 22233467865433221     111111 1112222222 22234444444444433211 11223334466678


Q ss_pred             hhHHHHHHHHHHhhccccHHHHHHH
Q psy9472         532 VAKTVLTFVVVFAMCFFPQHFFFLW  556 (647)
Q Consensus       532 ~~~~~~~i~~~f~~~w~P~~i~~~~  556 (647)
                      .++.+..+.+.-++|.+-|.+...+
T Consensus       234 ST~aI~~i~~~Q~i~~~iys~~v~~  258 (328)
T PF02117_consen  234 STKAICIISISQFICMFIYSFGVFI  258 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888887777654443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF03125 Sre: C

Probab=96.88  E-value=0.062  Score=54.62  Aligned_cols=32  Identities=19%  Similarity=0.064  Sum_probs=25.3

Q ss_pred             chhhhhhhHHHHHHHHHHHHHhhhheeecccc
Q psy9472         379 SESTKDISVGVSVFTLTALSADRFFAIVDPLR  410 (647)
Q Consensus       379 ~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~  410 (647)
                      .+++.........+.+.++++||.+|-..--.
T Consensus       126 ~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~d  157 (365)
T PF03125_consen  126 GGFLRWHYMFSAIFCLLAIVIERCFATYFIKD  157 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555566789999999999999999888

elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>KOG4564|consensus

Probab=96.83  E-value=0.026  Score=57.55  Aligned_cols=253  Identities=12%  Similarity=0.095  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecc------------ccccccc
Q psy9472         308 IVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFES------------WPYGESI  375 (647)
Q Consensus       308 ~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~------------~~~~~~~  375 (647)
                      +++.+-..++++.=++.+.++..-|++|-..|++=.||.++=++-++..+...........            -..+...
T Consensus       149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  228 (473)
T KOG4564|consen  149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG  228 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence            3444444444444444555666667888778888889988888876655444332221110            1245678


Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecC
Q psy9472         376 CKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD  455 (647)
Q Consensus       376 C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~  455 (647)
                      |+....+...+..+.-+=+.+=.+.-|-.+.--..         .-+++......+.|.+++++..+..+.....   ++
T Consensus       229 Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~---------ser~~~~~y~~iGWG~P~v~v~~Wai~r~~~---~d  296 (473)
T KOG4564|consen  229 CKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFF---------SERRYFWLYLLIGWGVPAVFVVVWAIVRLYL---ED  296 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeec---------cCccHHHHHHHHhhCCcHHHhhhHHhHheee---cc
Confidence            99888777777777766666555555544443222         1255666778899999999888876654211   11


Q ss_pred             CCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHH
Q psy9472         456 TNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKT  535 (647)
Q Consensus       456 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~  535 (647)
                             ..|+....... ..|.       .-.-..+++++-.++.+.|++.+-++-|..      +.......+|++|-
T Consensus       297 -------~~CW~~~~~~~-~~WI-------i~gPi~~ai~vNf~flinIvrILv~KLr~~------~~~~~~~y~K~vKa  355 (473)
T KOG4564|consen  297 -------TGCWDSNDTGH-IWWI-------IRGPILLAILVNFIFLINIVRILVTKLRAS------NASETDQYRKLVKA  355 (473)
T ss_pred             -------ccccccCCCcc-eEEE-------EeccHHHHHHHHHHHHHHHHHHHHHHhcCc------cccchHHHHHHHHH
Confidence                   25775444322 1111       111223334444445555666554433322      12222336788888


Q ss_pred             HHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhH---HhhcCCcccccccccc
Q psy9472         536 VLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANA---RRFHRPSTYSSTRKWD  605 (647)
Q Consensus       536 ~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI---~~fr~~~~~~~~~~~~  605 (647)
                      .++.+=+|-+-++.+.       +.++.. .....  ....-.+  ++|. --++   |.|-|.+.+...||..
T Consensus       356 TLvLIPLfGI~~ilf~-------~~P~~~-~~~~v--~~~~~~~--L~SfQGf~VAvlYCFlN~EVq~elrr~W  417 (473)
T KOG4564|consen  356 TLVLIPLFGIHYILFA-------FRPDED-TLREV--YLYFELF--LGSFQGFFVAVLYCFLNGEVQAELRRKW  417 (473)
T ss_pred             HHHHHHHcCCeeEEEE-------ecCchH-HHHHH--HHHHHHH--HHhccchheehheeecCHHHHHHHHHHH
Confidence            8877777766655432       222221 11111  1111111  6677 5555   8888888777766543

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.60  E-value=0.011  Score=57.71  Aligned_cols=173  Identities=14%  Similarity=0.140  Sum_probs=89.2

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||++|+-+|..|.+     |++..++. ...+++++.+.++....+.+.........++...  .  .-...      ..
T Consensus       102 is~nR~t~v~~p~~-----~~~~W~~~-~~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~------~~  165 (275)
T PF02118_consen  102 ISLNRFTSVLFPIR-----YEKFWKRY-YWIIIIIIFLLPFSFTWNIFISPTYVVYDNGGFS--Y--SYNDT------VS  165 (275)
T ss_pred             HHHHHHHHHhhHHh-----hhHHHHhh-hhhheeeeeehhHHHHHHHHccccEEEEECCceE--E--EEEec------cc
Confidence            57899999999999     55566644 3445555566665554443332222222211111  0  00000      00


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW  160 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~  160 (647)
                      +  ..........+++-+++.++++....+++++.+          .+.++.|++..+..++..+++.+.-+...+..+.
T Consensus       166 ~--~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~----------~~~~~~er~L~~is~~~~~~~~~~~~~~~~~~~~  233 (275)
T PF02118_consen  166 W--ASLSIFSLIYFIIIIIITIITNIITYRRLRKLS----------KRIKSVERNLTIISFIISFVQLLIAIWQIINSFA  233 (275)
T ss_pred             h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1  111122333344555566667777777776432          2233457777777777777777666554442221


Q ss_pred             HHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHH
Q psy9472         161 FYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKY  207 (647)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~  207 (647)
                      ... ...+  ..   +....+.....=.-+...|++-.+++++.|++
T Consensus       234 ~~~-~~~~--~~---~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~  274 (275)
T PF02118_consen  234 FFF-DFLP--IS---SFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ  274 (275)
T ss_pred             Hhh-cccc--HH---HHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence            111 1111  11   12222222222244677799999999999985

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.59  E-value=0.044  Score=54.30  Aligned_cols=240  Identities=15%  Similarity=0.173  Sum_probs=119.2

Q ss_pred             hHHHHHHHHHHHHHHhhHHhhhhhhhcCCCC-CCccchhhH----HHHHHHHHHhhcccceeeeeeecccccc-----cc
Q psy9472         305 LVPIVFAFIFVVGVLGNGTLVLIFINHKSMR-NVPNIYILS----LALGDLLVILTCVPFTSTVYTFESWPYG-----ES  374 (647)
Q Consensus       305 ~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~-~~~~~~l~~----Lav~Dll~~~~~~~~~~~~~~~~~~~~~-----~~  374 (647)
                      ......-.+.++++.-|++.++.+.++...+ +.....+++    ..+.|+..+.+..|........+ .+.|     ..
T Consensus         5 ~~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~-~~~G~l~~~gv   83 (302)
T PF10318_consen    5 FYSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAG-YPLGILSYFGV   83 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHh-hCCcchhhccc
Confidence            3455666778889999999999877653322 344444444    44577777777777654433322 1111     23


Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeec
Q psy9472         375 ICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKD  454 (647)
Q Consensus       375 ~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~  454 (647)
                      ...+..++..........++..+=-+||.++....+.       ...++.-.......++.+.+..+|.......++ ..
T Consensus        84 ~~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~~-------~~~~~~r~~~~~~~y~~~~~~~~~~~~~~pdQ~-~~  155 (302)
T PF10318_consen   84 PTPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRSR-------SLWKKIRIIFIIFNYIIAFLFFIPIYLSIPDQE-EA  155 (302)
T ss_pred             ChHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccccc-------ccchhhHHHHHHHHHHHHHHHHHHHhcCCccHH-HH
Confidence            3455556666666677777788889999999865430       112222333444455555555555544322111 10


Q ss_pred             CCCCCceeeeeecCC--CCCC---CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhh
Q psy9472         455 DTNNNTLFESCYPFP--PIDG---YPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRAR  529 (647)
Q Consensus       455 ~~~~~~~~~~C~~~~--~~~~---~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~  529 (647)
                      .. .-....-|.+..  +..+   ... ...+......+..++....+++....+...++++.+.     ...++..+.+
T Consensus       156 k~-~~~~~~pc~~~~~~~~~~~fv~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~-----~~S~~T~k~Q  228 (302)
T PF10318_consen  156 KQ-EVLKKYPCPPPEFFDNPPVFVLST-DSWYILIIIIIFLLIIFIQIIFFAFLIIYYLLKSQKK-----TMSKKTRKMQ  228 (302)
T ss_pred             HH-HHHhhccCCchhhcCCCCeEEEcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-----hhCHHHHHHH
Confidence            00 000111222210  1000   000 0112222223333333344444444455555554331     1133444666


Q ss_pred             hhhhHHHHHHHHHHhhc-cccHHHHHHHHHhC
Q psy9472         530 KKVAKTVLTFVVVFAMC-FFPQHFFFLWFYIN  560 (647)
Q Consensus       530 ~k~~~~~~~i~~~f~~~-w~P~~i~~~~~~~~  560 (647)
                      +|..+.+.+-+++.++. -.|.....+...++
T Consensus       229 kkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~  260 (302)
T PF10318_consen  229 KKFLIALIIQVLIPFIFLFIPLIYFIISIIFG  260 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            67776666655544443 46887777665554

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].

>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.56  E-value=0.14  Score=50.03  Aligned_cols=157  Identities=11%  Similarity=0.034  Sum_probs=97.8

Q ss_pred             cccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeee
Q psy9472         374 SICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFK  453 (647)
Q Consensus       374 ~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~  453 (647)
                      ..=++..++.+.+.+.+.+.-++.++-|..-+..|.+      +....++-....+-++.++++++++|.+...+....-
T Consensus       101 ~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~------~~~i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql  174 (307)
T PF10322_consen  101 HFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRN------HKKICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQL  174 (307)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccc------hhHHHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeC
Confidence            3445666788888999999999999999999999997      2445566667788889999999999887765543322


Q ss_pred             cCCCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhh
Q psy9472         454 DDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVA  533 (647)
Q Consensus       454 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~  533 (647)
                      +..-..+....=.   ..    .+.........++....-++.+++++..++.++|+.+.+. ..+...+++.|+|+..+
T Consensus       175 ~~Pf~fGAI~I~~---~~----~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k~~l-~~~~~s~~~~KAE~SLT  246 (307)
T PF10322_consen  175 DPPFPFGAIIITS---TG----SWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLKSSL-SSQRRSKQSRKAERSLT  246 (307)
T ss_pred             CCCCCCCEEEEEE---Ec----ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhcccchhhheeHH
Confidence            1111111100000   00    0111111223444555567788889999999999875211 11122344557777777


Q ss_pred             HHHHHHHHHHh
Q psy9472         534 KTVLTFVVVFA  544 (647)
Q Consensus       534 ~~~~~i~~~f~  544 (647)
                      .|+.++++-++
T Consensus       247 ~Tmi~mliP~i  257 (307)
T PF10322_consen  247 LTMISMLIPYI  257 (307)
T ss_pred             HHHHHHHHHHH
Confidence            77777766554

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].

>KOG4193|consensus

Probab=96.56  E-value=0.036  Score=59.30  Aligned_cols=163  Identities=12%  Similarity=0.139  Sum_probs=83.2

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCCCcchhhhhhhhhhhhhHHHHHHH
Q psy9472          24 RATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIAC  103 (647)
Q Consensus        24 ~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~  103 (647)
                      ...++-....+..|...++...............   +..  ...|+.+.+...             +..|+-|+.+++.
T Consensus       422 ~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~---~~~--~~~CWl~~~~~~-------------~~~F~GPv~~ii~  483 (610)
T KOG4193|consen  422 RPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQ---YGT--PRVCWLDTQNGF-------------IWSFLGPVTLIIL  483 (610)
T ss_pred             ccchHHHHHHHHHhhhhHHHHhheeEEeccCccc---ccc--CCceEEecCCce-------------EEEEehHHHHHHH
Confidence            3445555565689999877754433221111100   111  112876543321             1116788888888


Q ss_pred             HHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q psy9472         104 FYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGF  183 (647)
Q Consensus       104 ~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (647)
                      +++.++...-.+-.+.....+...++. ++.+..+..++.++++-+.|.=-..    .....   .        ...+..
T Consensus       484 ~Ni~~Fv~t~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~L~~lLGlTW~fgi~----s~~~~---~--------~~v~~Y  547 (610)
T KOG4193|consen  484 VNIVMFVVTLKKLLRRLSKLQPIASKL-ENISLIRSALALLFLLGLTWIFGIF----SWLPG---T--------SVVFAY  547 (610)
T ss_pred             HHHHHHHHHHHHHhhcccccCcchhhH-HHHHHHHHHHHHHHHHHHHHHHHHH----HHhcc---c--------chHHHH
Confidence            886544433222111111111111111 1225677777777777777754221    21111   0        112333


Q ss_pred             HHhhhhc---hhhHHHHHHhcHHHHHHHHHhhcccccccc
Q psy9472         184 CLGFINS---CINPIALYCVSGTFRKYFQKYLFCKMSSKI  220 (647)
Q Consensus       184 ~l~~~ns---~~NPiiY~~~~~~fr~~~~~~~~~~~~~~~  220 (647)
                      ++..+|+   ..=.++|++++++.|++.++.++|.+.+..
T Consensus       548 lFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~~~~~  587 (610)
T KOG4193|consen  548 LFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCGRGDSS  587 (610)
T ss_pred             HHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcccCCCCC
Confidence            4444444   566778999999999999999987655543

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.51  E-value=0.0032  Score=59.51  Aligned_cols=173  Identities=13%  Similarity=0.138  Sum_probs=101.9

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCCCcchhhhhhhhhhhhhHHHHHHH
Q psy9472          24 RATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIAC  103 (647)
Q Consensus        24 ~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~  103 (647)
                      ..++.....+.+.|++..++........................-|.........   ...+. ....+.-++.+.+|+.
T Consensus        90 k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~---~~~~~-~~~~~~D~~fvgLM~~  165 (265)
T PF03402_consen   90 KAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIV---SSLFA-TLLSFRDVLFVGLMIW  165 (265)
T ss_pred             hcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhh---hhhhh-hHHHhhHHHHHHHHHh
Confidence            3445566677888999887765322211110000000100111226543222111   11222 2233444667778888


Q ss_pred             HHHHHHHHHHhccCCCCCCc-chhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q psy9472         104 FYSLMARSLILSTKNMPGEL-QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVG  182 (647)
Q Consensus       104 ~y~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (647)
                      .-..+.-.+.||+++.+.-. .+..++...|.|++++++..+..|+..+..-.+..+........+        ++..+.
T Consensus       166 aSgyMV~~L~RH~q~VqhIhs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~~~--------~~~~~~  237 (265)
T PF03402_consen  166 ASGYMVFLLYRHHQQVQHIHSSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKNSP--------WLLNIS  237 (265)
T ss_pred             hhhhheeeeeecccccccCcCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcCCc--------ceeEHH
Confidence            88888887877766654322 223344457999999999999999999998877765544332221        122355


Q ss_pred             HHHhhhhchhhHHHHHHhcHHHHHHH
Q psy9472         183 FCLGFINSCINPIALYCVSGTFRKYF  208 (647)
Q Consensus       183 ~~l~~~ns~~NPiiY~~~~~~fr~~~  208 (647)
                      .+++..-+.+-|++-...+++..+.+
T Consensus       238 ~~ls~cfptisPfvLI~~d~~i~~~~  263 (265)
T PF03402_consen  238 VFLSSCFPTISPFVLISSDKRIIKFL  263 (265)
T ss_pred             HHHhHHhHhhChHHhhccCchHHHHh
Confidence            67888889999999999998887765

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.45  E-value=0.086  Score=52.65  Aligned_cols=85  Identities=16%  Similarity=0.194  Sum_probs=55.1

Q ss_pred             hHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHH
Q psy9472         126 QTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFR  205 (647)
Q Consensus       126 ~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr  205 (647)
                      ++-+.+++.|+.+++..++.+..+.-+-+.+..+............  ....+..+. ...-..+.+=|++.....++.|
T Consensus       221 ~RYQl~ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~y~al~e~~-~~~P~Y~ii~~~~~~~~~k~~r  297 (324)
T PF10292_consen  221 ERYQLEENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFNPSMSKP--NYFALAELN-HIFPLYSIISPLILYRKIKKIR  297 (324)
T ss_pred             hHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChh--hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            4445667788999888888888877777777766555433222111  111222222 2455678888999998999999


Q ss_pred             HHHHHhhc
Q psy9472         206 KYFQKYLF  213 (647)
Q Consensus       206 ~~~~~~~~  213 (647)
                      ++.++.+.
T Consensus       298 ~~~~~~l~  305 (324)
T PF10292_consen  298 KKRKKRLE  305 (324)
T ss_pred             HHHHHHHH
Confidence            88877663

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.44  E-value=0.0019  Score=64.25  Aligned_cols=116  Identities=14%  Similarity=0.252  Sum_probs=77.2

Q ss_pred             CCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHH-HHHHHhhhhHHHHH
Q psy9472          80 NYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFV-VVFAMCFFPQHFFF  158 (647)
Q Consensus        80 ~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~-~~f~~~~~P~~i~~  158 (647)
                      .+..............+.+.++++|-.++++++++..+..      +.+.++-+++..+.+.+=+ +=+++...|..+..
T Consensus       191 ~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~------S~~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~  264 (307)
T PF10326_consen  191 NWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM------SSKTRKLQKQLFKALVIQTIIPFIFMYIPVFIVF  264 (307)
T ss_pred             chhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc------ChhhHHHHHHHHHHHHHHhhhhheeeecchhhee
Confidence            3444444555555667889999999999999995433321      2233344556666555544 34566889988877


Q ss_pred             HHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHH
Q psy9472         159 LWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQ  209 (647)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~  209 (647)
                      ....++.....        ...+...+..+-+++||++-.+.-|+||++++
T Consensus       265 ~~p~~~i~~~~--------~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~  307 (307)
T PF10326_consen  265 ILPFFGIDLGF--------FSNIISILISLYPAIDPLPVIFIIKDYRKAIK  307 (307)
T ss_pred             eeeccCCCCCc--------cccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence            76655533221        22345667889999999999999999999864

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].

>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]

Probab=96.29  E-value=0.22  Score=49.11  Aligned_cols=149  Identities=14%  Similarity=0.067  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceee------eee-e------cccccc
Q psy9472         306 VPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTST------VYT-F------ESWPYG  372 (647)
Q Consensus       306 ~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~------~~~-~------~~~~~~  372 (647)
                      ......+.+.+.++.+.+++..+...++.-+-+..-++-++++-++.++..+.-.+.      ... .      .....+
T Consensus        11 ~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~~~~   90 (328)
T PF01534_consen   11 ARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQDGLE   90 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeecCCC
Confidence            333444445555556666666555544432333445555555555554432221111      110 0      011234


Q ss_pred             ccccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeee
Q psy9472         373 ESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAF  452 (647)
Q Consensus       373 ~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~  452 (647)
                      +..|.+...+.+.+..++..=-+.+++.=|++....-.       .-.-.++....-+++|.++.+..+..+......  
T Consensus        91 ~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~-------~e~i~~~s~yfH~~aW~iP~~~ti~vL~~~~Vd--  161 (328)
T PF01534_consen   91 NSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWG-------SEAIEKKSSYFHLVAWGIPAVLTIAVLALRKVD--  161 (328)
T ss_pred             CCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccC-------cchhhhhcchhhhHHhhhhHHHHHHHHHhcccc--
Confidence            67899998888888888887777888888888765433       112345666779999999999888766554322  


Q ss_pred             ecCCCCCceeeeeecC
Q psy9472         453 KDDTNNNTLFESCYPF  468 (647)
Q Consensus       453 ~~~~~~~~~~~~C~~~  468 (647)
                           .++..+.|...
T Consensus       162 -----gD~ltGiC~Vg  172 (328)
T PF01534_consen  162 -----GDELTGICFVG  172 (328)
T ss_pred             -----cccccceeEEe
Confidence                 22445678753

In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.19  E-value=0.04  Score=54.17  Aligned_cols=98  Identities=12%  Similarity=0.188  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHH
Q psy9472         100 IIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILR  179 (647)
Q Consensus       100 ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~  179 (647)
                      ++.++-.+|.+.++++..+      -+++.+++.++..|.+.+-+++=+++..|-....++..+.....       ....
T Consensus       195 ~~~~~R~ki~~~L~~~~~~------~S~~tk~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~~~-------~~~e  261 (292)
T PF10317_consen  195 VIFFLRRKILKFLNKKSSS------MSERTKSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGYEH-------PFLE  261 (292)
T ss_pred             HHHHHHHHHHHHHHhhhhh------cCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-------HHHH
Confidence            3444555666666542221      13344446677888888888888889998887777776654322       2344


Q ss_pred             HHHHHHhhhhchhhHHHHHHhcHHHHHHHHH
Q psy9472         180 IVGFCLGFINSCINPIALYCVSGTFRKYFQK  210 (647)
Q Consensus       180 ~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~  210 (647)
                      .+...+..+.+.+||++...+=+.||++++|
T Consensus       262 ~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r  292 (292)
T PF10317_consen  262 YLIFMLASLPPLIDPLITLYFVRPYRKAILR  292 (292)
T ss_pred             HHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence            5566678899999999999999999999864

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.99  E-value=0.089  Score=52.13  Aligned_cols=105  Identities=18%  Similarity=0.298  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHH-hhhhHHHHHHHHHhcCCCCCChhhHH
Q psy9472          97 PLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAM-CFFPQHFFFLWFYINPTAPDDYNDFW  175 (647)
Q Consensus        97 p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~-~~~P~~i~~~~~~~~~~~~~~~~~~~  175 (647)
                      ....+++....+.+.++++.+.     +.+++..|.++|..+.+.+=+.+..+ .-.|.....+....+...        
T Consensus       197 ~~~~~~~f~~~~~~~l~~~~~~-----~~S~~T~k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~~~~--------  263 (302)
T PF10318_consen  197 IFIQIIFFAFLIIYYLLKSQKK-----TMSKKTRKMQKKFLIALIIQVLIPFIFLFIPLIYFIISIIFGYYN--------  263 (302)
T ss_pred             HHHHHHHHHHHHHHHHHhhchh-----hhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc--------
Confidence            3333334444444445444331     11344555666777666655555444 556877766655443221        


Q ss_pred             HHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcc
Q psy9472         176 HILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFC  214 (647)
Q Consensus       176 ~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~  214 (647)
                      +.+..++..+...+..+.-++..+.+|.+|+.++++++|
T Consensus       264 q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~~  302 (302)
T PF10318_consen  264 QALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFRC  302 (302)
T ss_pred             cccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence            223456677888999999999999999999999999987

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=95.79  E-value=0.24  Score=48.49  Aligned_cols=65  Identities=18%  Similarity=0.355  Sum_probs=34.7

Q ss_pred             hhHHHHHHH----HHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9472          95 AVPLLIIAC----FYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWF  161 (647)
Q Consensus        95 ~~p~~ii~~----~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~  161 (647)
                      .+|++++.+    .|.+..+++-..-+.....-..  +.++....+-+-.+.|.++|.+||+|-.+--++-
T Consensus       199 Y~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~yT~--~ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL  267 (405)
T PF02101_consen  199 YIPLLLVLVANPILYIKAVRAVASLLKGRQGIYTE--NERRLGAQIKIKFFKIMLVFYICWLPNIINGSLL  267 (405)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHhhccccccH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHH
Confidence            356555554    4445544444333332222111  1122223344556678899999999988876644

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF03125 Sre: C

Probab=95.66  E-value=0.18  Score=51.23  Aligned_cols=41  Identities=17%  Similarity=0.054  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccc
Q psy9472         176 HILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKM  216 (647)
Q Consensus       176 ~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~  216 (647)
                      ..+..+......+++.+=|.+-....++.|+++++.+...+
T Consensus       283 ~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~  323 (365)
T PF03125_consen  283 TILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIR  323 (365)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhh
Confidence            34555677778888888888888899999999998886443

elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.48  E-value=0.033  Score=54.90  Aligned_cols=107  Identities=14%  Similarity=0.237  Sum_probs=76.9

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCC
Q psy9472          88 MRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTA  167 (647)
Q Consensus        88 ~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~  167 (647)
                      ...+++..+-.+++.+++..+++.+++.+++..      .+..++.+++.+.+.+-.++-.+|-+|..+...........
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS------~~ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~~~~  269 (303)
T PF10327_consen  196 ILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKIS------KQTYQKHKEAVRSLIAQFATSSICILPPFIFVVVVIFEFED  269 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecCCC
Confidence            334444555666777778888888765544322      34455677888899988899999999988877655543221


Q ss_pred             CCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHH
Q psy9472         168 PDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKY  207 (647)
Q Consensus       168 ~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~  207 (647)
                      .       +.+..+......++|.+|-++-.+.++.||+.
T Consensus       270 ~-------q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f  302 (303)
T PF10327_consen  270 A-------QVISEICLAIFSSHSSVNMIVLIITTPPYRKF  302 (303)
T ss_pred             c-------HHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence            1       34556777888999999999999999999984

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>KOG4564|consensus

Probab=95.02  E-value=0.23  Score=50.92  Aligned_cols=158  Identities=14%  Similarity=0.192  Sum_probs=88.7

Q ss_pred             chhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCCCcchhhhhhhhhhhhhHHHHHHHHH
Q psy9472          26 TRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFY  105 (647)
Q Consensus        26 ~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y  105 (647)
                      ++.-..-.++.|.+..++..+.........   +.       .|...... ....|     +  .-...++++++-.++.
T Consensus       266 r~~~~~y~~iGWG~P~v~v~~Wai~r~~~~---d~-------~CW~~~~~-~~~~W-----I--i~gPi~~ai~vNf~fl  327 (473)
T KOG4564|consen  266 RRYFWLYLLIGWGVPAVFVVVWAIVRLYLE---DT-------GCWDSNDT-GHIWW-----I--IRGPILLAILVNFIFL  327 (473)
T ss_pred             ccHHHHHHHHhhCCcHHHhhhHHhHheeec---cc-------cccccCCC-cceEE-----E--EeccHHHHHHHHHHHH
Confidence            345566777889999888888766542211   11       27644332 11111     1  1222345566666777


Q ss_pred             HHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Q psy9472         106 SLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCL  185 (647)
Q Consensus       106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (647)
                      ..|.|.+-+.-|.....      ...+.+|++|-.++.+=+|-+-.+.+       .+.+  +.+  ........+...|
T Consensus       328 inIvrILv~KLr~~~~~------~~~~y~K~vKaTLvLIPLfGI~~ilf-------~~~P--~~~--~~~~v~~~~~~~L  390 (473)
T KOG4564|consen  328 INIVRILVTKLRASNAS------ETDQYRKLVKATLVLIPLFGIHYILF-------AFRP--DED--TLREVYLYFELFL  390 (473)
T ss_pred             HHHHHHHHHHhcCcccc------chHHHHHHHHHHHHHHHHcCCeeEEE-------EecC--chH--HHHHHHHHHHHHH
Confidence            77777776544332222      11236677777766666665544331       1111  111  1112333345566


Q ss_pred             hhhhchhhHHHHHHhcHHHHHHHHHhhcccccc
Q psy9472         186 GFINSCINPIALYCVSGTFRKYFQKYLFCKMSS  218 (647)
Q Consensus       186 ~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~  218 (647)
                      ..+.=.+=-++||+.|++.|.++||.+...+-.
T Consensus       391 ~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~~~  423 (473)
T KOG4564|consen  391 GSFQGFFVAVLYCFLNGEVQAELRRKWSRWRLS  423 (473)
T ss_pred             HhccchheehheeecCHHHHHHHHHHHHhcChh
Confidence            667777778899999999999999988655443

>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.78  E-value=0.073  Score=45.33  Aligned_cols=123  Identities=11%  Similarity=0.118  Sum_probs=77.0

Q ss_pred             ccchhhHHHHHHHHHHhhcccceeeeeeeccc---cccccccccchhhhhhhHHHHHHHHHHHHHhhhheeecccccccc
Q psy9472         338 PNIYILSLALGDLLVILTCVPFTSTVYTFESW---PYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHS  414 (647)
Q Consensus       338 ~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~---~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~  414 (647)
                      +-.|+.++.++.++..+....-........+-   .+.+..=+-...+..++.....+...+|++||-..|.+|++    
T Consensus         3 P~vYI~~M~i~gi~~~~~~~v~~~~~~~~~~~~Y~~yr~~~G~~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~----   78 (153)
T PF03383_consen    3 PFVYIYNMIICGIIDKFFIFVDFWIPLFLPDEGYEEYRQFFGKEVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFG----   78 (153)
T ss_pred             CEEEEeHHHHhhHHHHHHHHhhhhhhhccChhHHHHHHHHhCCEEeeeehHHHHHHHHHHHHHHHhheEEEEecCC----
Confidence            34677888888887755422211111111110   00011122234456667778889999999999999999999    


Q ss_pred             CCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeeec
Q psy9472         415 GIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYP  467 (647)
Q Consensus       415 ~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~  467 (647)
                       -..+.+.+|.+..+.++.++.+...+.|.+..-...++..  .......|.+
T Consensus        79 -~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S~C~vnf~~~--~~~f~s~Cap  128 (153)
T PF03383_consen   79 -SEIWFSDKKLWIYCGIIAILSFISLLIPYFSDCYVNFDAR--TFSFVSACAP  128 (153)
T ss_pred             -CccccccchhHHHHHHHHHHHHHHHHhhcCCCCcEEEEee--eeEEEEccCC
Confidence             3447899999999998888888877777665444444332  2334456765

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].

>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.65  E-value=0.73  Score=44.58  Aligned_cols=214  Identities=14%  Similarity=0.122  Sum_probs=104.4

Q ss_pred             HHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchhhhhhhHHHHHHHH
Q psy9472         315 VVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTL  394 (647)
Q Consensus       315 ~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l  394 (647)
                      ++|++..+.-+....|.+  ..++-.++.-+.++++...+= ....- ... .+|.  +..|.+..-+.......-....
T Consensus         5 ~i~~~l~i~Pl~wH~ra~--N~~~~~li~Wl~l~nl~~~IN-aiIW~-~n~-~~~~--~~wCDI~~kl~~~~~~g~~~a~   77 (283)
T PF02076_consen    5 FIAFVLLIVPLPWHWRAR--NIGTCSLIFWLFLSNLIYFIN-AIIWR-DND-INWW--PVWCDISTKLIIGSSVGIPAAS   77 (283)
T ss_pred             HHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHh-hhhcC-CCC-CccC--ceeeeehHHHHHHHHHHHHHHH
Confidence            344444443333333333  245667888899999888442 22211 111 2232  2799999877777666655555


Q ss_pred             HHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchhee-eeeeecCCCCCceeeeeecCCCCCC
Q psy9472         395 TALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSY-VRAFKDDTNNNTLFESCYPFPPIDG  473 (647)
Q Consensus       395 ~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~~~~~~  473 (647)
                      ++|+-.-|. |..+-+..   .....++|+...=..+++.++++.....++... ....-+       ...|.+..... 
T Consensus        78 lcI~r~L~~-I~s~r~~~---~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e-------~~GC~~~~~~s-  145 (283)
T PF02076_consen   78 LCIMRRLYR-IASARAVS---LSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVE-------DVGCYPAIYPS-  145 (283)
T ss_pred             HHHHHHHHH-HhccccCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEec-------ccCCccCCCCC-
Confidence            555543332 33322210   122234677777788888888887665544332 222222       24676432221 


Q ss_pred             CCCcchhhhhhHHHHHHHHHHHH--HHHHHH-HHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHHHhhccccH
Q psy9472         474 YPNYPRTVIIMRFLIYYAVPLLI--IACFYS-LMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQ  550 (647)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~ip~~i--i~~~y~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~  550 (647)
                               .....+.++-|.++  +...|. ..++...|+++..++.-+.+ ++.-+..|..| +..+.++.+++.+|.
T Consensus       146 ---------~~~~~l~~iwp~i~~lia~vYa~lt~~~f~~rr~~f~~~l~~s-~s~l~~~Rf~R-L~~la~~~i~~~~P~  214 (283)
T PF02076_consen  146 ---------WPTIFLFIIWPPIFSLIAAVYAILTLRRFIRRRKQFRDILSSS-NSGLNTSRFFR-LLALALVIILIYLPL  214 (283)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcccHHHHHH-HHHHHHHHHHHHHHH
Confidence                     11222222223222  222232 22333333332211111111 11112234444 666778888889999


Q ss_pred             HHHHHHHH
Q psy9472         551 HFFFLWFY  558 (647)
Q Consensus       551 ~i~~~~~~  558 (647)
                      .+..++..
T Consensus       215 ~i~~~v~n  222 (283)
T PF02076_consen  215 SIYYLVSN  222 (283)
T ss_pred             HHHHHHHH
Confidence            99988843

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=93.24  E-value=0.34  Score=36.01  Aligned_cols=69  Identities=4%  Similarity=0.062  Sum_probs=50.4

Q ss_pred             HHHHhHhHHHHHHHHHHHHHhhh-hHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHH
Q psy9472         130 IRARKKVAKTVLTFVVVFAMCFF-PQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGT  203 (647)
Q Consensus       130 ~~~~~k~~~~~~~i~~~f~~~~~-P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~  203 (647)
                      +++-+|.++.+++==++|+++|+ |...-.+-.........     ..++..++.++..+|..+|-++|++.-|.
T Consensus         4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p-----~~~l~~i~~~~~~~~G~VD~lvf~~~erp   73 (76)
T PF11970_consen    4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGP-----SFWLFCIAGFMQPSQGFVDCLVFTLRERP   73 (76)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----chHHHHHHHHHHHccCHHHhhheeeeccc
Confidence            34556788999999999999999 97766554442222111     14566788899999999999999986543

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.

>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=91.85  E-value=0.7  Score=34.34  Aligned_cols=67  Identities=4%  Similarity=0.104  Sum_probs=42.4

Q ss_pred             hHhhhhhhHHHHHHHHHHhhccc-cHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhh-hccC-chhHHhhcCCc
Q psy9472         526 IRARKKVAKTVLTFVVVFAMCFF-PQHFFFLWFYINPTAPDDYNDFWHILRIMSSKI-INSR-NANARRFHRPS  596 (647)
Q Consensus       526 ~~~~~k~~~~~~~i~~~f~~~w~-P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ns~-NPiI~~fr~~~  596 (647)
                      .++-+|.++.+++=-++|+++|+ |...-..-.....+. .+.   +.+..+.+..+ +|.. |-++|.+|++-
T Consensus         4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~-~p~---~~l~~i~~~~~~~~G~VD~lvf~~~erp   73 (76)
T PF11970_consen    4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGH-GPS---FWLFCIAGFMQPSQGFVDCLVFTLRERP   73 (76)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCc---hHHHHHHHHHHHccCHHHhhheeeeccc
Confidence            45567888999999999999999 877655544422222 111   11122222222 7888 99999998753

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.

>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity

Probab=90.24  E-value=0.98  Score=42.25  Aligned_cols=167  Identities=13%  Similarity=0.248  Sum_probs=89.5

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCCCcchhhhhhhhhhhhhHHHHHHH
Q psy9472          24 RATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIAC  103 (647)
Q Consensus        24 ~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~  103 (647)
                      ..+.-..+....+|+.++..-.-....+-.+.+....  ..+.-.|.......+. ......-+.-.++.+.+|+++. .
T Consensus       129 F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~--~~y~L~C~~~~~~v~~-~~P~~IqiiE~ilQ~~IPi~Il-~  204 (305)
T PF04789_consen  129 FESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWS--KHYQLNCETCNSVVDI-SPPRGIQIIEIILQFGIPIFIL-V  204 (305)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHhCCCeeeccccc--ccEEEEcCCCCeeEee-CCCCchhHHHHHHHHhHHHHHH-H
Confidence            3355667778889999988766544444333333322  3333346644111100 0112233466778889998655 4


Q ss_pred             HHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q psy9472         104 FYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGF  183 (647)
Q Consensus       104 ~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (647)
                      .|..+..++..-++         ....+.|.+.+|..+.+.++|-+   +..+..    +.+..+... .....+..+-.
T Consensus       205 iYiAIIiKI~~MKk---------ssLnK~Ei~ILKQAifIFvlFQ~---ss~VFl----~~qt~~~~~-~tAFlIKR~iN  267 (305)
T PF04789_consen  205 IYIAIIIKIIKMKK---------SSLNKNEITILKQAIFIFVLFQA---SSCVFL----LCQTFKFNV-ATAFLIKRIIN  267 (305)
T ss_pred             HHHHHHHHHHHHhh---------ccCCchhHHHHHHHHHHHHHHHH---HHHHHH----hheeeeecc-hHHHHHHHHHH
Confidence            56555444432111         11223577788877666555544   432222    222211111 11123334445


Q ss_pred             HHhhhhchhhHHHHHHhcHHHHHHHHHh
Q psy9472         184 CLGFINSCINPIALYCVSGTFRKYFQKY  211 (647)
Q Consensus       184 ~l~~~ns~~NPiiY~~~~~~fr~~~~~~  211 (647)
                      -+..+.-+..|......+||.|+.+...
T Consensus       268 T~ei~agaatP~ffffTs~eirk~~s~k  295 (305)
T PF04789_consen  268 TMEIFAGAATPCFFFFTSKEIRKLVSSK  295 (305)
T ss_pred             HHHHHhhccCCeEEEEehHHHHHHHHhh
Confidence            5566777889999999999999987543

>PF13853 7tm_4: Olfactory receptor

Probab=88.42  E-value=0.0098  Score=51.27  Aligned_cols=115  Identities=17%  Similarity=0.250  Sum_probs=71.4

Q ss_pred             hhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCC-CCCCCCcchhhhhhhhhhhhhHHHHHHHHHHHH
Q psy9472          30 ILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPI-DGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM  108 (647)
Q Consensus        30 ~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i  108 (647)
                      ..+.++.|+.+++.+++.......  ....+.-+..+++ ...... ..+...++.+......+..+.|+.+++++|..|
T Consensus         4 ~~l~~~~~~~~~~~~l~~~~~~~~--l~~~nii~~f~c~-~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~I   80 (144)
T PF13853_consen    4 LLLAAGSWLSGLLNSLPHTLLTLS--LCFCNIIHHFCCD-PPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRI   80 (144)
T ss_pred             ehhhHHHHHHHHHHHHHHHHHHee--CCCCCCCcceeeC-HHHhcccCCchhhhheeeecccceeEEEEeeccccceeEE
Confidence            456677898888887776654332  2222111222111 111111 222233455555666677789999999999999


Q ss_pred             HHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Q psy9472         109 ARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFL  159 (647)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~  159 (647)
                      .+.+.|...            .+.++|+..+...+..+..+.+.|.....+
T Consensus        81 l~avlki~S------------~~~r~KAfsTC~sHL~vv~lfy~~~~~~y~  119 (144)
T PF13853_consen   81 LRAVLKIPS------------AEGRSKAFSTCSSHLTVVSLFYGTVIFMYL  119 (144)
T ss_pred             Eehhhcccc------------cccccccccccccCceEEEEeeeeeEEEEe
Confidence            998875332            234568999999999999888888655444

>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans

Probab=87.54  E-value=3.8  Score=36.64  Aligned_cols=39  Identities=13%  Similarity=0.186  Sum_probs=29.3

Q ss_pred             cccccccchhhhhhhHHHHHHHHHHHHHhhhheeecccc
Q psy9472         372 GESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLR  410 (647)
Q Consensus       372 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~  410 (647)
                      .-..|.+..-.......+.....+++|++||+.|.+-.|
T Consensus       113 tI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r  151 (226)
T PF06681_consen  113 TIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR  151 (226)
T ss_pred             EEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence            456788876655555566666777899999999998666

The function of this family is unknown.

>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=87.26  E-value=6.2  Score=38.32  Aligned_cols=74  Identities=12%  Similarity=0.141  Sum_probs=49.4

Q ss_pred             HHHHHHHhHhHHHHHHHHHH-HHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHH
Q psy9472         127 TRQIRARKKVAKTVLTFVVV-FAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFR  205 (647)
Q Consensus       127 ~~~~~~~~k~~~~~~~i~~~-f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr  205 (647)
                      ++..+.+++..|.+.+-++. ..+|+.|-.+.+....+.....       .+....+......=+.+||+.-.+.=+.||
T Consensus       235 ~~T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~i~~~-------~~~n~~~~iAls~FPf~DPlAii~~lP~~R  307 (310)
T PF10319_consen  235 KKTKRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFGIDLG-------RWNNYFSVIALSAFPFLDPLAIILCLPAFR  307 (310)
T ss_pred             HhHHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHcCChh-------HHHHHHHHHHHHHccccCchHhheecHHhh
Confidence            34444556666666665544 4568889888877666654321       344455555666778999999888889999


Q ss_pred             HH
Q psy9472         206 KY  207 (647)
Q Consensus       206 ~~  207 (647)
                      ++
T Consensus       308 ~r  309 (310)
T PF10319_consen  308 NR  309 (310)
T ss_pred             cc
Confidence            75

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].

>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=86.77  E-value=7.5  Score=35.85  Aligned_cols=41  Identities=12%  Similarity=0.157  Sum_probs=35.8

Q ss_pred             cccccccccchhhhhhhHHHHHHHHHHHHHhhhheeecccc
Q psy9472         370 PYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLR  410 (647)
Q Consensus       370 ~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~  410 (647)
                      ..+...++.......+....+++.-..+++||++|....-+
T Consensus        79 iI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~  119 (236)
T PF02175_consen   79 IIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEK  119 (236)
T ss_pred             EEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            34566788888888899999999999999999999999777

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF13853 7tm_4: Olfactory receptor

Probab=85.74  E-value=0.015  Score=50.08  Aligned_cols=118  Identities=18%  Similarity=0.259  Sum_probs=74.1

Q ss_pred             hhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeee-cCCCCCCCC-CcchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy9472         426 ILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCY-PFPPIDGYP-NYPRTVIIMRFLIYYAVPLLIIACFYSL  503 (647)
Q Consensus       426 ~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-~~~~~~~~~-~~~~~~~~~~~~~~~~ip~~ii~~~y~~  503 (647)
                      ..+.++.|+.+++..++.......  .+..+..++.  .|. +.......+ ..+..+...........|+.+++++|..
T Consensus         4 ~~l~~~~~~~~~~~~l~~~~~~~~--l~~~nii~~f--~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~   79 (144)
T PF13853_consen    4 LLLAAGSWLSGLLNSLPHTLLTLS--LCFCNIIHHF--CCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIR   79 (144)
T ss_pred             ehhhHHHHHHHHHHHHHHHHHHee--CCCCCCCcce--eeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeE
Confidence            345677888888877776654332  2222222221  222 111111112 2233344444556677899999999999


Q ss_pred             HHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHHHhhccccHHHHHHHHHh
Q psy9472         504 MARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYI  559 (647)
Q Consensus       504 i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~~  559 (647)
                      |...+.|..            +.+.++|+..+...+..+..+.++|..+.++....
T Consensus        80 Il~avlki~------------S~~~r~KAfsTC~sHL~vv~lfy~~~~~~y~~~~~  123 (144)
T PF13853_consen   80 ILRAVLKIP------------SAEGRSKAFSTCSSHLTVVSLFYGTVIFMYLSPRS  123 (144)
T ss_pred             EEehhhccc------------ccccccccccccccCceEEEEeeeeeEEEEeccCc
Confidence            999887642            33556699999999999999999998776665544

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=81.66  E-value=3.8  Score=39.47  Aligned_cols=17  Identities=29%  Similarity=0.462  Sum_probs=15.0

Q ss_pred             Cccceehhhhccccccc
Q psy9472           1 LSADRFFAIVDPLRKLH   17 (647)
Q Consensus         1 isidRy~aI~~P~~~~~   17 (647)
                      ||+||-+|+..|..+++
T Consensus       102 Ia~dR~~A~~fPI~y~~  118 (273)
T PF10316_consen  102 IALDRVFAVYFPIFYHN  118 (273)
T ss_pred             HHHHHHHHHcCCHHHHc
Confidence            68999999999999655

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	647
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		4e-18
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		3e-17
2ks9_A	364	Solution Conformation Of Substance P In Water Compl		3e-16
4ej4_A	461	Structure Of The Delta Opioid Receptor Bound To Nal		2e-14
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		3e-12
4dkl_A	464	Crystal Structure Of The Mu-Opioid Receptor Bound T		4e-12
4a4m_A	349	Crystal Structure Of The Light-Activated Constituti		4e-12
3oax_A	349	Crystal Structure Of Bovine Rhodopsin With Beta-Ion		7e-12
1jfp_A	348	Structure Of Bovine Rhodopsin (Dark Adapted) Length		7e-12
2j4y_A	349	Crystal Structure Of A Rhodopsin Stabilizing Mutant		9e-12
3c9m_A	348	Structure Of A Mutant Bovine Rhodopsin In Hexagonal		9e-12
2x72_A	349	Crystal Structure Of The Constitutively Active E113		9e-12
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		1e-11
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		1e-11
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		1e-11
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		1e-11
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		1e-11
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		4e-11
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		1e-10
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-10
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		1e-10
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		2e-10
3pwh_A	329	Thermostabilised Adenosine A2a Receptor Length = 32		9e-08
3vw7_A	484	Crystal Structure Of Human Protease-Activated Recep		1e-07
3vg9_A	326	Crystal Structure Of Human Adenosine A2a Receptor W		3e-07
2ydo_A	325	Thermostabilised Human A2a Receptor With Adenosine		3e-07
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		2e-06
3oe0_A	499	Crystal Structure Of The Cxcr4 Chemokine Receptor I		2e-06
3odu_A	502	The 2.5 A Structure Of The Cxcr4 Chemokine Receptor		2e-06
3oe6_A	508	Crystal Structure Of The Cxcr4 Chemokine Receptor I		3e-06
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		4e-06
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		5e-06
2z73_A	448	Crystal Structure Of Squid Rhodopsin Length = 448		1e-05
2ziy_A	372	Crystal Structure Of Squid Rhodopsin Length = 372		1e-05
3uon_A	467	Structure Of The Human M2 Muscarinic Acetylcholine		3e-05

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 99/200 (49%), Gaps = 11/200 (5%)
Query: 305 LVPIVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVY 364
           ++  V++ +F            + I +  M+   NIYI +LAL D LV  T +PF STVY
Sbjct: 24  IITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVT-TTMPFQSTVY 82
Query: 365 TFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRC 424
              SWP+G+ +CKI  S    ++  S+FTLT +S DR+ A+  P++ L       R    
Sbjct: 83  LMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDF-----RTPLK 137
Query: 425 TILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIM 484
             +I   IW+ +    I ++ L   +  ++D +   + E    FP  D Y  +   + I 
Sbjct: 138 AKIINICIWLLSSSVGISAIVLGGTKV-REDVD---VIECSLQFPD-DDYSWWDLFMKIC 192
Query: 485 RFLIYYAVPLLIIACFYSLM 504
            F+  + +P+LII   Y+LM
Sbjct: 193 VFIFAFVIPVLIIIVCYTLM 212

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 106/229 (46%), Gaps = 19/229 (8%)
Query: 327 IFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDIS 386
           + + H  M+   NIYI +LAL D LV+LT +PF  T      WP+G ++CK   +    +
Sbjct: 149 VILRHTKMKTATNIYIFNLALADTLVLLT-LPFQGTDILLGFWPFGNALCKTVIAIDYYN 207
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
           +  S FTLTA+S DR+ AI  P+R L       R +     +  AIW  A +  +P   +
Sbjct: 208 MFTSTFTLTAMSVDRYVAICHPIRALDV-----RTSSKAQAVNVAIWALASVVGVPVAIM 262
Query: 447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMAR 506
              +   +D     L E   P P     P +     I  FL  + VP+L+I+  YSLM R
Sbjct: 263 GSAQV--EDEEIECLVE--IPTPQDYWGPVFA----ICIFLFSFIVPVLVISVCYSLMIR 314
Query: 507 SLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFL 555
            L          L G   + R  +++ + VL  V VF  C+ P   F L
Sbjct: 315 RL-----RGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVL 358

>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 119/244 (48%), Gaps = 33/244 (13%)
Query: 327 IFINHKSMRNVPNIYILSLALGD--LLVILTCVPFTSTVYTFESWPYGESICKISESTKD 384
           I + HK MR V N ++++LA  +  +    T V FT  V+    W YG   CK       
Sbjct: 56  IILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVH--NEWYYGLFYCKFHNFFPI 113
Query: 385 ISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSM 444
            +V  S++++TA++ DR+ AI+ PL+   S    K       +++  IW+ A+L A P  
Sbjct: 114 AAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATK-------VVICVIWVLALLLAFP-- 164
Query: 445 TLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTV------IIMRFLIYYAVPLLIIA 498
                + +   T        C     +  +P +P  +      I +  LIY+ +PLL+I 
Sbjct: 165 -----QGYYSTTETMPSRVVC-----MIEWPEHPNKIYEKVYHICVTVLIYF-LPLLVIG 213
Query: 499 CFYSLMARSLILSTKNMPGELQGQ-TRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWF 557
             Y+++  +L  S   +PG+   +   Q+ A++KV K ++  V  FA+C+ P H FFL  
Sbjct: 214 YAYTVVGITLWAS--EIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLP 271
Query: 558 YINP 561
           YINP
Sbjct: 272 YINP 275

>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 329 INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVG 388
           + +  ++   NIYI +LAL D L   T +PF S  Y  E+WP+GE +CK   S    ++ 
Sbjct: 40  VRYTKLKTATNIYIFNLALADALATST-LPFQSAKYLMETWPFGELLCKAVLSIDYYNMF 98
Query: 389 VSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSY 448
            S+FTLT +S DR+ A+  P++ L      K       LI   IW+ A    +P M ++ 
Sbjct: 99  TSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAK-----LINICIWVLASGVGVPIMVMAV 153
Query: 449 VRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM 504
            +        +        FP    Y  +     I  FL  + VP+LII   Y LM
Sbjct: 154 TQP------RDGAVVCMLQFPSPSWY--WDTVTKICVFLFAFVVPILIITVCYGLM 201

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 16/227 (7%)
Query: 280 NGDQIII--NTSLSTDFKPYSERLETYLVP--IVFAFIFXXXXXXXXXXXXIFINHKSMR 335
           NG   ++  N S + D     +R E ++V   IV + I                  + ++
Sbjct: 14  NGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQ 73
Query: 336 NVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLT 395
            V N +I SLA  DL++ L  VPF +     + W +G   C+   S   + V  S++TL 
Sbjct: 74  TVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWTLC 133
Query: 396 ALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD 455
            ++ DR+FAI  P +  +  +  K   R  IL+V   WI + L +   + + + RA   +
Sbjct: 134 VIAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQE 188
Query: 456 TNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 502
             N    E+C  F     Y        I   ++ + VPL+I+   YS
Sbjct: 189 AINCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 228

>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 14/178 (7%)
Query: 327 IFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDIS 386
           + + +  M+   NIYI +LAL D L   T +PF S  Y   +WP+G  +CKI  S    +
Sbjct: 41  VIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMGTWPFGNILCKIVISIDYYN 99
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
           +  S+FTL  +S DR+ A+  P++ L       R  R   ++    WI +    +P M +
Sbjct: 100 MFTSIFTLCTMSVDRYIAVCHPVKALDF-----RTPRNAKIVNVCNWILSSAIGLPVMFM 154
Query: 447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM 504
           +  +  +   +    F       P   + N  +  +   F+  + +P+LII   Y LM
Sbjct: 155 ATTKYRQGSIDCTLTFSH-----PTWYWENLLKICV---FIFAFIMPVLIITVCYGLM 204

>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 104/227 (45%), Gaps = 28/227 (12%)
Query: 329 INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT--FESWPYGESICKISESTKDIS 386
           + HK +R   N  +L+LA+ DL ++     FT+T+YT     + +G + C +      + 
Sbjct: 64  VQHKKLRTPLNYILLNLAVADLFMVFG--GFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 121
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
             +++++L  L+ +R+  +  P+     G          I+ VA  W+ A+ CA P + +
Sbjct: 122 GEIALWSLVVLAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-V 174
Query: 447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYS 502
            + R   +         SC     ID Y  +  T     +I  F++++ +PL++I   Y 
Sbjct: 175 GWSRYIPEGMQC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG 225
Query: 503 LMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 549
                L+ + K    + Q      +A K+V + V+ +V+ F +C+ P
Sbjct: 226 ----QLVFTVKEAAAQQQESATTQKAEKEVTRMVIIYVIAFLICWLP 268

>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 28/227 (12%)
Query: 329 INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT--FESWPYGESICKISESTKDIS 386
           + HK +R   N  +L+LA+ DL ++     FT+T+YT     + +G + C +      + 
Sbjct: 64  VQHKKLRTPLNYILLNLAVADLFMVFG--GFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 121
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
             +++++L  L+ +R+  +  P+     G          I+ VA  W+ A+ CA P + +
Sbjct: 122 GEIALWSLVVLAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-V 174
Query: 447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYS 502
            + R   +         SC     ID Y  +  T     +I  F++++ +PL++I   Y 
Sbjct: 175 GWSRYIPEGMQC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG 225
Query: 503 LMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 549
                L+ + K    + Q      +A K+V + V+  V+ F +C+ P
Sbjct: 226 ----QLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLP 268

>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 28/227 (12%)
Query: 329 INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT--FESWPYGESICKISESTKDIS 386
           + HK +R   N  +L+LA+ DL ++     FT+T+YT     + +G + C +      + 
Sbjct: 63  VQHKKLRTPLNYILLNLAVADLFMVFG--GFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 120
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
             +++++L  L+ +R+  +  P+     G          I+ VA  W+ A+ CA P + +
Sbjct: 121 GEIALWSLVVLAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-V 173
Query: 447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYS 502
            + R   +         SC     ID Y  +  T     +I  F++++ +PL++I   Y 
Sbjct: 174 GWSRYIPEGMQC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG 224
Query: 503 LMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 549
                L+ + K    + Q      +A K+V + V+  V+ F +C+ P
Sbjct: 225 ----QLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLP 267

>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349

Iteration: 1
 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 28/227 (12%)
Query: 329 INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT--FESWPYGESICKISESTKDIS 386
           + HK +R   N  +L+LA+ DL ++     FT+T+YT     + +G + C +      + 
Sbjct: 64  VQHKKLRTPLNYILLNLAVADLFMVFG--GFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 121
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
             +++++L  L+ +R+  +  P+     G          I+ VA  W+ A+ CA P + +
Sbjct: 122 GEIALWSLVVLAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-V 174
Query: 447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYS 502
            + R   +         SC     ID Y  +  T     +I  F++++ +PL++I   Y 
Sbjct: 175 GWSRYIPEGMQC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG 225
Query: 503 LMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 549
                L+ + K    + Q      +A K+V + V+  V+ F +C+ P
Sbjct: 226 ----QLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLP 268

>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348

Iteration: 1
 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 28/227 (12%)
Query: 329 INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT--FESWPYGESICKISESTKDIS 386
           + HK +R   N  +L+LA+ DL ++     FT+T+YT     + +G + C +      + 
Sbjct: 63  VQHKKLRTPLNYILLNLAVADLFMVFG--GFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 120
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
             +++++L  L+ +R+  +  P+     G          I+ VA  W+ A+ CA P + +
Sbjct: 121 GEIALWSLVVLAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-V 173
Query: 447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYS 502
            + R   +         SC     ID Y  +  T     +I  F++++ +PL++I   Y 
Sbjct: 174 GWSRYIPEGMQC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG 224
Query: 503 LMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 549
                L+ + K    + Q      +A K+V + V+  V+ F +C+ P
Sbjct: 225 ----QLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLP 267

>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 28/227 (12%)
Query: 329 INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT--FESWPYGESICKISESTKDIS 386
           + HK +R   N  +L+LA+ DL ++     FT+T+YT     + +G + C +      + 
Sbjct: 64  VQHKKLRTPLNYILLNLAVADLFMVFG--GFTTTLYTSLHGYFVFGPTGCNLQGFFATLG 121
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
             +++++L  L+ +R+  +  P+     G          I+ VA  W+ A+ CA P + +
Sbjct: 122 GEIALWSLVVLAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-V 174
Query: 447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYS 502
            + R   +         SC     ID Y  +  T     +I  F++++ +PL++I   Y 
Sbjct: 175 GWSRYIPEGMQC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG 225
Query: 503 LMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 549
                L+ + K    + Q      +A K+V + V+  V+ F +C+ P
Sbjct: 226 ----QLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLP 268

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 19/218 (8%)
Query: 332 KSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSV 391
           + ++ V N +I SLA  DL++ L  VPF +     ++W +G   C+   S   + V  S+
Sbjct: 34  ERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASI 93
Query: 392 FTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRA 451
            TL  ++ DR+FAI  P +  +  +  K   R  IL+V   WI + L +   + + + RA
Sbjct: 94  ETLCVIAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRA 148
Query: 452 FKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILS 511
              +  N    E+C  F     Y        I   ++ + VPL+I+   YS +       
Sbjct: 149 THQEAINCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYSRV------- 194
Query: 512 TKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 549
            +    +LQ   +      K  KT+   +  F +C+ P
Sbjct: 195 FQEAKRQLQKIDKFCLKEHKALKTLGIIMGTFTLCWLP 232

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 16/227 (7%)
Query: 280 NGDQIII--NTSLSTDFKPYSERLETYLVP--IVFAFIFXXXXXXXXXXXXIFINHKSMR 335
           NG   ++  N S + D     +R E ++V   IV + I                  + ++
Sbjct: 13  NGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQ 72
Query: 336 NVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLT 395
            V N +I SLA  DL++ L  VPF +     + W +G   C+   S   + V  S+ TL 
Sbjct: 73  TVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLC 132
Query: 396 ALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD 455
            ++ DR+FAI  P +  +  +  K   R  IL+V   WI + L +   + + + RA   +
Sbjct: 133 VIAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQE 187
Query: 456 TNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 502
             N    E+C  F     Y        I   ++ + VPL+I+   YS
Sbjct: 188 AINCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 227

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 16/227 (7%)
Query: 280 NGDQIII--NTSLSTDFKPYSERLETYLVP--IVFAFIFXXXXXXXXXXXXIFINHKSMR 335
           NG   ++  N S + D     +R E ++V   IV + I                  + ++
Sbjct: 6   NGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQ 65
Query: 336 NVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLT 395
            V N +I SLA  DL++ L  VPF +     + W +G   C+   S   + V  S+ TL 
Sbjct: 66  TVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLC 125
Query: 396 ALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD 455
            ++ DR+FAI  P +  +  +  K   R  IL+V   WI + L +   + + + RA   +
Sbjct: 126 VIAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQE 180
Query: 456 TNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 502
             N    E+C  F     Y        I   ++ + VPL+I+   YS
Sbjct: 181 AINCYANETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 220

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 16/227 (7%)
Query: 280 NGDQIII--NTSLSTDFKPYSERLETYLVP--IVFAFIFXXXXXXXXXXXXIFINHKSMR 335
           NG   ++  N S + D     +R E ++V   IV + I                  + ++
Sbjct: 14  NGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQ 73
Query: 336 NVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLT 395
            V N +I SLA  DL++ L  VPF +     + W +G   C+   S   + V  S+ TL 
Sbjct: 74  TVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLC 133
Query: 396 ALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD 455
            ++ DR+FAI  P +  +  +  K   R  IL+V   WI + L +   + + + RA   +
Sbjct: 134 VIAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQE 188
Query: 456 TNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 502
             N    E+C  F     Y        I   ++ + VPL+I+   YS
Sbjct: 189 AINCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 228

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 16/227 (7%)
Query: 280 NGDQIII--NTSLSTDFKPYSERLETYLVP--IVFAFIFXXXXXXXXXXXXIFINHKSMR 335
           NG   ++  N S + D     +R E ++V   IV + I                  + ++
Sbjct: 7   NGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQ 66
Query: 336 NVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLT 395
            V N +I SLA  DL++ L  VPF +     + W +G   C+   S   + V  S+ TL 
Sbjct: 67  TVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLC 126
Query: 396 ALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD 455
            ++ DR+FAI  P +  +  +  K   R  IL+V   WI + L +   + + + RA   +
Sbjct: 127 VIAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQE 181
Query: 456 TNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 502
             N    E+C  F     Y        I   ++ + VPL+I+   YS
Sbjct: 182 AINCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 221

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%)
Query: 298 SERLETYLVP--IVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVILT 355
            +R E ++V   IV + I                  + ++ V N +I SLA  DL++ L 
Sbjct: 2   QQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLA 61
Query: 356 CVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSG 415
            VPF +     + W +G   C+   S   + V  S+ TL  ++ DR+FAI  P +  +  
Sbjct: 62  VVPFGAACILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFK--YQS 119
Query: 416 IGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYP 475
           +  K   R  IL+V   WI + L +   + + + RA   +  N    E+C  F     Y 
Sbjct: 120 LLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYA 176
Query: 476 NYPRTVIIMRFLIYYAVPLLIIACFYS 502
                  I   ++ + VPL+I+   YS
Sbjct: 177 -------IASSIVSFYVPLVIMVFVYS 196

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 12/171 (7%)
Query: 332 KSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSV 391
           + ++ V N +I SLA  DL++ L  VPF +     + W +G   C+   S   + V  S+
Sbjct: 39  ERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASI 98
Query: 392 FTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRA 451
            TL  ++ DR+FAI  P +  +  +  K   R  IL+V   WI + L +   + + + RA
Sbjct: 99  ETLCVIAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRA 153
Query: 452 FKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 502
              +  N    E+C  F     Y        I   ++ + VPL+I+   YS
Sbjct: 154 THQEAINCYANETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 197

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 12/171 (7%)
Query: 332 KSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSV 391
           + ++ V N +I SLA  DL++ L  VPF +     ++W +G   C+   S   + V  S+
Sbjct: 211 ERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASI 270
Query: 392 FTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRA 451
            TL  ++ DR+FAI  P +  +  +  K   R  IL+V   WI + L +   + + + RA
Sbjct: 271 ETLCVIAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRA 325
Query: 452 FKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 502
              +  N    E+C  F     Y        I   ++ + VPL+I+   YS
Sbjct: 326 THQEAINCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 369

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 37/235 (15%)
Query: 332 KSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSV 391
           + ++ + N++I SLA  DL+V L  VPF +T+    +W +G  +C++  S   + V  S+
Sbjct: 40  QRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASI 99
Query: 392 FTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRA 451
            TL  ++ DR+ AI  P R   S +   RA     +I+  +W  + L +   + + + R 
Sbjct: 100 ETLCVIAIDRYLAITSPFRY-QSLMTRARAK----VIICTVWAISALVSFLPIMMHWWR- 153
Query: 452 FKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILS 511
              D +   L   CY  P    +    R   I   +I + +PLLI           +I  
Sbjct: 154 ---DEDPQAL--KCYQDPGCCDFVT-NRAYAIASSIISFYIPLLI-----------MIFV 196
Query: 512 TKNMPGELQGQTRQI-RARK----------KVAKTVLTFVVVFAMCFFPQHFFFL 555
              +  E + Q R+I RA K          K  KT+   + VF +C+ P   FFL
Sbjct: 197 ALRVYREAKEQIRKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLP---FFL 248

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 39/237 (16%)
Query: 332 KSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSV 391
           + ++ + N++I SLA  DL+V L  VPF +T+    +W +G  +C++  S   + V  S+
Sbjct: 40  QRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASI 99
Query: 392 FTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRA 451
            TL  ++ DR+ AI  P R   S +   RA     +I+  +W  + L +   + + + R 
Sbjct: 100 ETLCVIAIDRYLAITSPFRY-QSLMTRARAK----VIICTVWAISALVSFLPIMMHWWR- 153
Query: 452 FKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILS 511
              D +   L   CY  P    +    R   I   +I + +PLLI           +I  
Sbjct: 154 ---DEDPQAL--KCYQDPGCCDFVT-NRAYAIASSIISFYIPLLI-----------MIFV 196
Query: 512 TKNMPGELQGQTRQI-RARK------------KVAKTVLTFVVVFAMCFFPQHFFFL 555
              +  E + Q R+I RA K            K  KT+   + VF +C+ P   FFL
Sbjct: 197 ALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLP---FFL 250

>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 108/238 (45%), Gaps = 38/238 (15%)
Query: 331 HKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT-FESWPYGESICKISESTKDISVGV 389
           + +++NV N +++SLA  D+LV +  +PF  T+ T F +  +G   C        +    
Sbjct: 34  NSNLQNVTNYFVVSLAAADILVGVLAIPFAITISTGFCAACHG---CLFIACFVLVLAQS 90
Query: 390 SVFTLTALSADRFFAIVDPLRKLHSG-IGGKRATRCTILIVAAIWIFAILCAI-PSMTLS 447
           S+F+L A++ DR+ AI  PLR  ++G + G RA      I+A  W+ +    + P +  +
Sbjct: 91  SIFSLLAIAIDRYIAIAIPLR--YNGLVTGTRAAG----IIAICWVLSFAIGLTPMLGWN 144
Query: 448 YVRAFKDDTNNN---------TLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIA 498
                K+  N++          LFE   P        NY   ++   F     VPLL++ 
Sbjct: 145 NCGQPKEGKNHSQGCGEGQVACLFEDVVPM-------NY---MVYFNFFACVLVPLLLML 194
Query: 499 CFYSLM---ARSLI--LSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQH 551
             Y  +   AR  +  + ++ +PGE    T Q       AK+      +FA+C+ P H
Sbjct: 195 GVYLRIFAAARRQLKQMESQPLPGERARSTLQ--KEVHAAKSAAIIAGLFALCWLPLH 250

>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1 (Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom Length = 484

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 303 TYLVPIVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTST 362
           T  VP V+  +F            +FI    ++    +Y+L LA  D+L + + +PF  +
Sbjct: 20  TLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFV-SVLPFKIS 78
Query: 363 VY-TFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRA 421
            Y +   W +G  +C+   +    ++  S+  +T +S DRF A+V P++ L     G+ +
Sbjct: 79  YYFSGSDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRAS 138
Query: 422 TRCTILIVAAIWIFAILCAIP 442
             C      AIW  AI   +P
Sbjct: 139 FTCL-----AIWALAIAGVVP 154

>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 40/239 (16%)
Query: 331 HKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT-FESWPYGESICKISESTKDISVGV 389
           + +++NV N +++SLA  D+ V +  +PF  T+ T F +  +G   C        +    
Sbjct: 34  NSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHG---CLFIACFVLVLTQS 90
Query: 390 SVFTLTALSADRFFAIVDPLRKLHSG-IGGKRATRCTILIVAAIWI--FAIL-------- 438
           S+F+L A++ DR+ AI  PLR  ++G + G RA      I+A  W+  FAI         
Sbjct: 91  SIFSLLAIAIDRYIAIRIPLR--YNGLVTGTRAKG----IIAICWVLSFAIGLTPMLGWN 144
Query: 439 -CAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLII 497
            C  P     + +   +      LFE   P        NY   ++   F     VPLL++
Sbjct: 145 NCGQPKEGKQHSQGCGEG-QVACLFEDVVPM-------NY---MVYFNFFACVLVPLLLM 193
Query: 498 ACFYS---LMARSLI--LSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQH 551
              Y    L AR  +  + ++ +PGE    T Q       AK++   V +FA+C+ P H
Sbjct: 194 LGVYLRIFLAARRQLKQMESQPLPGERARSTLQ--KEVHAAKSLAIIVGLFALCWLPLH 250

>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 40/239 (16%)
Query: 331 HKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT-FESWPYGESICKISESTKDISVGV 389
           + +++NV N +++S A  D+LV +  +PF   + T F +  +G   C        +    
Sbjct: 34  NSNLQNVTNYFVVSAAAADILVGVLAIPFAIAISTGFCAACHG---CLFIACFVLVLTAS 90
Query: 390 SVFTLTALSADRFFAIVDPLRKLHSG-IGGKRATRCTILIVAAIWI--FAIL-------- 438
           S+F+L A++ DR+ AI  PLR  ++G + G RA      I+A  W+  FAI         
Sbjct: 91  SIFSLLAIAIDRYIAIRIPLR--YNGLVTGTRAKG----IIAICWVLSFAIGLTPMLGWN 144
Query: 439 -CAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLII 497
            C  P    ++ +   +      LFE   P        NY   ++   F     VPLL++
Sbjct: 145 NCGQPKEGKAHSQGCGEG-QVACLFEDVVPM-------NY---MVYFNFFACVLVPLLLM 193
Query: 498 ACFYS---LMARSLI--LSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQH 551
              Y    L AR  +  + ++ +PGE    T Q       AK++   V +FA+C+ P H
Sbjct: 194 LGVYLRIFLAARRQLKQMESQPLPGERARSTLQ--KEVHAAKSLAIIVGLFALCWLPLH 250

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 330 NHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGV 389
           + + +  V N+YI+SL++ DL+V    +P          W  G  +C    S   ++   
Sbjct: 35  SERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTA 94
Query: 390 SVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIP 442
           S+F++  L  DR+ ++  PLR L      +  TR +  I+ A W  + L  IP
Sbjct: 95  SIFSVFILCIDRYRSVQQPLRYLKY----RTKTRASATILGA-WFLSFLWVIP 142

>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 294 FKPYSERLETYLVPIVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVI 353
           F+  +       +P +++ IF            +    K +R++ + Y L L++ DLL +
Sbjct: 39  FREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV 98
Query: 354 LTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLH 413
           +T +PF + V    +W +G  +CK       +++  SV+ L  +S DR+ AIV       
Sbjct: 99  IT-LPFWA-VDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQR 156
Query: 414 SGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKD 454
                 R      ++   +WI A+L  IP    + V    D
Sbjct: 157 P-----RKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADD 192

>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 294 FKPYSERLETYLVPIVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVI 353
           F+  +       +P +++ IF            +    K +R++ + Y L L++ DLL +
Sbjct: 39  FREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV 98
Query: 354 LTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLH 413
           +T +PF + V    +W +G  +CK       +++  SV+ L  +S DR+ AIV       
Sbjct: 99  IT-LPFWA-VDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQR 156
Query: 414 SGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKD 454
                 R      ++   +WI A+L  IP    + V    D
Sbjct: 157 P-----RKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADD 192

>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 294 FKPYSERLETYLVPIVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVI 353
           F+  +       +P +++ IF            +    K +R++ + Y L L++ DLL +
Sbjct: 39  FREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV 98
Query: 354 LTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLH 413
           +T +PF + V    +W +G  +CK       +++  SV+ L  +S DR+ AIV       
Sbjct: 99  IT-LPFWA-VDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQR 156
Query: 414 SGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKD 454
                 R      ++   +WI A+L  IP    + V    D
Sbjct: 157 P-----RKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADD 192

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 329 INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVY---TFESWPYGESICKISESTKDI 385
           +  ++++   N  ++SLA+ DLLV    +P+   VY   T   W +    C +  +   +
Sbjct: 64  LKERALQTTTNYLVVSLAVADLLVATLVMPWV--VYLEVTGGVWNFSRICCDVFVTLDVM 121
Query: 386 SVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIP 442
               S++ L A+S DR+ A+V P+   H    G+ + R   L++ A+W+ A   + P
Sbjct: 122 MCTASIWNLCAISIDRYTAVVMPVHYQHG--TGQSSCRRVALMITAVWVLAFAVSCP 176

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 331 HKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVS 390
           +K ++ V N ++LSLA  DL++ +  +   +T      W  G   C +  S   ++   S
Sbjct: 40  NKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNAS 99
Query: 391 VFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSM 444
           V  L  +S DR+F+I  PL         KR T+   +++   W+ + +   P++
Sbjct: 100 VMNLLVISFDRYFSITRPLT-----YRAKRTTKRAGVMIGLAWVISFVLWAPAI 148

>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 94/206 (45%), Gaps = 20/206 (9%)
Query: 327 IFINHKSMRNVPNIYILSLALGDL-LVILTCVPFTSTVYTFESWPYGESICKISESTKDI 385
           +F   KS++   N++I++LA  D    ++   P  +     + W +G + CK+      I
Sbjct: 58  LFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGI 117
Query: 386 SVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMT 445
              +S+ T+  +S DR+  I  P+         K + R   +++  +W++++L AI    
Sbjct: 118 FGFMSIMTMAMISIDRYNVIGRPM-----AASKKMSHRRAFIMIIFVWLWSVLWAIGP-- 170
Query: 446 LSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLII-ACFYSLM 504
              +  +   T    L    + +   D   +  R+ I+  F++ +  P+LII  C++   
Sbjct: 171 ---IFGWGAYTLEGVLCNCSFDYISRD---STTRSNILCMFILGFFGPILIIFFCYF--- 221
Query: 505 ARSLILSTKNMPGELQGQTRQIRARK 530
             ++++S  N   E+    +++ A++
Sbjct: 222 --NIVMSVSNHEKEMAAMAKRLNAKE 245

>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 94/206 (45%), Gaps = 20/206 (9%)
Query: 327 IFINHKSMRNVPNIYILSLALGDL-LVILTCVPFTSTVYTFESWPYGESICKISESTKDI 385
           +F   KS++   N++I++LA  D    ++   P  +     + W +G + CK+      I
Sbjct: 57  LFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGI 116
Query: 386 SVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMT 445
              +S+ T+  +S DR+  I  P+         K + R   +++  +W++++L AI    
Sbjct: 117 FGFMSIMTMAMISIDRYNVIGRPM-----AASKKMSHRRAFIMIIFVWLWSVLWAIGP-- 169
Query: 446 LSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLII-ACFYSLM 504
              +  +   T    L    + +   D   +  R+ I+  F++ +  P+LII  C++   
Sbjct: 170 ---IFGWGAYTLEGVLCNCSFDYISRD---STTRSNILCMFILGFFGPILIIFFCYF--- 220
Query: 505 ARSLILSTKNMPGELQGQTRQIRARK 530
             ++++S  N   E+    +++ A++
Sbjct: 221 --NIVMSVSNHEKEMAAMAKRLNAKE 244

>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 331 HKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFES----WPYGESICKISESTKDIS 386
           ++ ++ V N ++ SLA  DL++ +    F+  +YT  +    WP G  +C +  +   + 
Sbjct: 51  NRHLQTVNNYFLFSLACADLIIGV----FSMNLYTLYTVIGYWPLGPVVCDLWLALDYVV 106
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSM 444
              SV  L  +S DR+F +  PL         KR T+   +++AA W+ + +   P++
Sbjct: 107 SNASVMNLLIISFDRYFCVTKPLT-----YPVKRTTKMAGMMIAAAWVLSFILWAPAI 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	647
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	6e-79
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	1e-53
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	4e-66
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	5e-40
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	4e-45
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	3e-22
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	2e-42
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	9e-13
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	4e-12
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	5e-39
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	3e-11
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	6e-08
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-35
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-18
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	2e-25
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	4e-16
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	3e-24
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	7e-08
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	2e-05
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	2e-23
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	6e-14
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	2e-23
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	1e-10
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	2e-04
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	1e-22
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	9e-11
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	3e-04
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	1e-21
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	1e-08
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	2e-21
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	4e-09
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	1e-20
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	4e-07
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	1e-20
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score =  254 bits (650), Expect = 6e-79
 Identities = 78/305 (25%), Positives = 131/305 (42%), Gaps = 25/305 (8%)

Query: 286 INTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSL 345
           I+T+ S   +      +  L    +  I V  V+GN  ++ I + HK MR V N ++++L
Sbjct: 15  ISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNL 74

Query: 346 ALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAI 405
           A  +  +         T      W YG   CK        +V  S++++TA++ DR+ AI
Sbjct: 75  AFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAI 134

Query: 406 VDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESC 465
           + PL+        + +   T +++  IW+ A+L A P    S                 C
Sbjct: 135 IHPLQP-------RLSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRV-------VC 180

Query: 466 YPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGEL-QGQTR 524
               P      Y +   I   ++ Y +PLL+I   Y+++  +L      +PG+       
Sbjct: 181 MIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLW--ASEIPGDSSDRYHE 238

Query: 525 QIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRI------MS 578
           Q+ A++KV K ++  V  FA+C+ P H FFL  YINP        F   + +      MS
Sbjct: 239 QVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYL--KKFIQQVYLAIMWLAMS 296

Query: 579 SKIIN 583
           S + N
Sbjct: 297 STMYN 301

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score =  186 bits (475), Expect = 1e-53
 Identities = 60/252 (23%), Positives = 101/252 (40%), Gaps = 19/252 (7%)

Query: 1   LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
           ++ DR+ AI+ PL+        + +   T +++  IW+ A+L A P    S         
Sbjct: 126 VAFDRYMAIIHPLQP-------RLSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRV 178

Query: 61  NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
                   C    P      Y +   I   ++ Y +PLL+I   Y+++  +L      +P
Sbjct: 179 -------VCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLW--ASEIP 229

Query: 121 GEL-QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILR 179
           G+       Q+ A++KV K ++  V  FA+C+ P H FFL  YINP        F   + 
Sbjct: 230 GDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYL--KKFIQQVY 287

Query: 180 IVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANARRFHRPSTYSS 239
           +    L   ++  NPI   C++  FR  F+    C       +      +      T  S
Sbjct: 288 LAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISAGDYEGLEMKSTRYLQTQGS 347

Query: 240 TRKWDSMSTTHN 251
             K   + TT +
Sbjct: 348 VYKVSRLETTIS 359

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score =  163 bits (414), Expect = 4e-45
 Identities = 45/269 (16%), Positives = 106/269 (39%), Gaps = 16/269 (5%)

Query: 296 PYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILT 355
             +E  +  ++      + ++G   N   + + + HK +R   N  +L+LA+ DL ++  
Sbjct: 31  YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 90

Query: 356 CVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSG 415
               T        + +G + C +      +   +++++L  L+ +R+  +  P+      
Sbjct: 91  GFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS----- 145

Query: 416 IGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYP 475
              +      I+ VA  W+ A+ CA P   L     +  +        SC          
Sbjct: 146 -NFRFGENHAIMGVAFTWVMALACAAPP--LVGWSRYIPEGMQC----SCGIDYYTPHEE 198

Query: 476 NYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKT 535
               + +I  F++++ +PL++I   Y  +  ++  +        Q      +A K+V + 
Sbjct: 199 TNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ----QESATTQKAEKEVTRM 254

Query: 536 VLTFVVVFAMCFFPQHFFFLWFYINPTAP 564
           V+  V+ F +C+ P      + + +  + 
Sbjct: 255 VIIMVIAFLICWLPYAGVAFYIFTHQGSD 283

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 97.5 bits (243), Expect = 3e-22
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 23/220 (10%)

Query: 1   LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
           L+ +R+  +  P+         +      I+ VA  W+ A+ CA P   L     +  + 
Sbjct: 132 LAIERYVVVCKPMS------NFRFGENHAIMGVAFTWVMALACAAPP--LVGWSRYIPEG 183

Query: 61  NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
                  SC              + +I  F++++ +PL++I   Y  +  ++  +     
Sbjct: 184 MQC----SCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ- 238

Query: 121 GELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRI 180
              Q      +A K+V + V+  V+ F +C+ P      + + +  +      F  I   
Sbjct: 239 ---QESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD-----FGPIFMT 290

Query: 181 VGFCLGFINSCINPIALYCVSGT-FRKYFQKYLFCKMSSK 219
           +       ++  NP+ +Y +    FR      L C  +  
Sbjct: 291 IPAFFAKTSAVYNPV-IYIMMNKQFRNCMVTTLCCGKNPL 329

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score =  158 bits (401), Expect = 2e-42
 Identities = 54/275 (19%), Positives = 106/275 (38%), Gaps = 29/275 (10%)

Query: 288 TSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLAL 347
           +            +    +  +++ + VVG+ GN  ++ + + +  M+   NIYI +LAL
Sbjct: 2   SHSLCPQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLAL 61

Query: 348 GDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVD 407
            D L     +PF S  Y   +WP+G  +CKI  S    ++  S+FTL  +S DR+ A+  
Sbjct: 62  ADALATS-TLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCH 120

Query: 408 PLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYP 467
           P++ L       R  R   ++    WI +    +P M ++  +  +           C  
Sbjct: 121 PVKALDF-----RTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSI-------DCTL 168

Query: 468 FPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIR 527
                 +  +   + I  F+  + +P+LII   Y LM   L               + +R
Sbjct: 169 TFSHPTW-YWENLLKICVFIFAFIMPVLIITVCYGLMILRL---------------KSVR 212

Query: 528 ARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPT 562
              ++ +      +         +   +   +  +
Sbjct: 213 NIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKS 247

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 69.6 bits (170), Expect = 9e-13
 Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 3/93 (3%)

Query: 126 QTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCL 185
              + R  +++ + VL  V VF +C+ P H + +   +       +     +       L
Sbjct: 371 AYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQT---VSWHFCIAL 427

Query: 186 GFINSCINPIALYCVSGTFRKYFQKYLFCKMSS 218
           G+ NSC+NP+    +   F++ F+++     S+
Sbjct: 428 GYTNSCLNPVLYAFLDENFKRCFREFCIPTSST 460

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 67.7 bits (165), Expect = 4e-12
 Identities = 43/355 (12%), Positives = 99/355 (27%), Gaps = 43/355 (12%)

Query: 1   LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
           +S DR+ A+  P++ L       R  R   ++    WI +    +P M ++  +  +   
Sbjct: 110 MSVDRYIAVCHPVKALDF-----RTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSI 164

Query: 61  NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
                   C        +  +   + I  F+  + +P+LII   Y LM   L        
Sbjct: 165 -------DCTLTFSHPTW-YWENLLKICVFIFAFIMPVLIITVCYGLMILRL-------- 208

Query: 121 GELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRI 180
                  + +R   ++ +      +         +   +   +  +   +          
Sbjct: 209 -------KSVRNIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKSPSLNAAK------- 254

Query: 181 VGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANARRFHRPSTYSST 240
                    +    I        F +     +   + +  +     +     R +  +  
Sbjct: 255 SELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMV 314

Query: 241 RKWDSMSTTHNPNNLQMNTFRRAPQNDPVTMA-------TEITKITNGDQIIINTSLSTD 293
            +          N+L+M   +R      V +A       T              T  + +
Sbjct: 315 FQMGETGVAGFTNSLRMLQQKR-WDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYE 373

Query: 294 FKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALG 348
                 R+   ++ +V  FI     +    ++   I           +   +ALG
Sbjct: 374 KDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALG 428

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score =  149 bits (378), Expect = 5e-39
 Identities = 56/265 (21%), Positives = 106/265 (40%), Gaps = 17/265 (6%)

Query: 286 INTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSL 345
            ++     F+  +       +P +++ IF+ G++GNG ++L+    K +R++ + Y L L
Sbjct: 31  YDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHL 90

Query: 346 ALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAI 405
           ++ DLL ++T +PF   V    +W +G  +CK       +++  SV+ L  +S DR+ AI
Sbjct: 91  SVADLLFVIT-LPF-WAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAI 148

Query: 406 VDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESC 465
           V             R      ++   +WI A+L  IP    + V    D          C
Sbjct: 149 VHATNSQRP-----RKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRY-------IC 196

Query: 466 YPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQ 525
             F P      +         ++   +P ++I   Y ++   L  S  N+   L+     
Sbjct: 197 DRFYP---NDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGL 253

Query: 526 IRARKKVAKTVLTFVVVFAMCFFPQ 550
                K  +   T  +   +   P 
Sbjct: 254 RLKIYKDTEGYYTIGIGHLLTKSPS 278

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 65.3 bits (159), Expect = 3e-11
 Identities = 27/205 (13%), Positives = 55/205 (26%), Gaps = 40/205 (19%)

Query: 1   LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
           +S DR+ AIV             R      ++   +WI A+L  IP    + V    D  
Sbjct: 140 ISLDRYLAIVHATNSQRP-----RKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRY 194

Query: 61  NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
                   C  F P      +         ++   +P ++I   Y ++   L  S  N  
Sbjct: 195 -------ICDRFYP---NDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSN-- 242

Query: 121 GELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRI 180
                         ++ +      +         +   +   +  + P        + + 
Sbjct: 243 ------------IFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKS-PSLNAAKSELDKA 289

Query: 181 VGF----------CLGFINSCINPI 195
           +G                N  ++  
Sbjct: 290 IGRNTNGVITKDEAEKLFNQDVDAA 314

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 8/106 (7%)

Query: 121 GELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW-----FYINPTAPDDYNDFW 175
           G       +   ++K  KT +  ++ F  C+ P +            I     +  N   
Sbjct: 396 GTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTV- 454

Query: 176 HILRIVGFCLGFINSCINPIALYC-VSGTFRKYFQKYLFCKMSSKI 220
           H    +   L F + C+NPI LY  +   F+   Q  L      ++
Sbjct: 455 HKWISITEALAFFHCCLNPI-LYAFLGAKFKTSAQHALTSGRPLEV 499

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score =  138 bits (348), Expect = 2e-35
 Identities = 57/278 (20%), Positives = 108/278 (38%), Gaps = 32/278 (11%)

Query: 304 YLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLV-ILTCVPFTST 362
           Y + I      ++G  GNG ++ +F   KS++   N++I++LA  D    ++   P  + 
Sbjct: 35  YSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTI 94

Query: 363 VYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRAT 422
               + W +G + CK+      I   +S+ T+  +S DR+  I  P+         K+ +
Sbjct: 95  SCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMA------ASKKMS 148

Query: 423 -RCTILIVAAIWIFAILCAIPSMTL--SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPR 479
            R   +++  +W++++L AI  +    +Y               +C      D       
Sbjct: 149 HRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLE-----GVLC---NCS----FDYISRDST 196

Query: 480 TV--IIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG--------ELQGQTRQIRAR 529
           T   I+  F++ +  P+LII   Y  +  S+    K M          EL+       A 
Sbjct: 197 TRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAE 256

Query: 530 KKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDY 567
            ++AK  +  V  F + + P     L     P      
Sbjct: 257 MRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTP 294

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 88.1 bits (218), Expect = 1e-18
 Identities = 47/285 (16%), Positives = 92/285 (32%), Gaps = 41/285 (14%)

Query: 1   LSADRFFAIVDPLRKLHSGIGGKRAT-RCTILIVAAIWIFAILCAIPSMTL--SYVRAFK 57
           +S DR+  I  P+         K+ + R   +++  +W++++L AI  +    +Y     
Sbjct: 129 ISIDRYNVIGRPMA------ASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLE-- 180

Query: 58  DDTNNNTLFESCYPFPPIDGYPNYPRTV--IIMRFLIYYAVPLLIIACFYSLMARSLILS 115
                     +C      D       T   I+  F++ +  P+LII   Y  +  S+   
Sbjct: 181 ---GVLC---NCS----FDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNH 230

Query: 116 TKNMPG--------ELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTA 167
            K M          EL+       A  ++AK  +  V  F + + P     L     P  
Sbjct: 231 EKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLE 290

Query: 168 PDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGT-FRKYFQKYLFCKMS---SKIINS 223
                        +       ++  NP+ +Y VS   FR+   +     ++        +
Sbjct: 291 WVTP-----YAAQLPVMFAKASAIHNPM-IYSVSHPKFREAISQTFPWVLTCCQFDDKET 344

Query: 224 RNANARRFHRPSTYSSTRKWDSMSTTHNPNNLQMNTFRRAPQNDP 268
            +        P+  SS     + +         M   ++     P
Sbjct: 345 EDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYP 389

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score =  106 bits (266), Expect = 2e-25
 Identities = 59/261 (22%), Positives = 111/261 (42%), Gaps = 19/261 (7%)

Query: 308 IVFAFIFVVGVLGNGTLVLIFINH-KSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTF 366
           ++ A + ++ V GN  LV+  I   + ++ + N++I SLA  DL+V L  VPF +T+   
Sbjct: 16  LLMALVVLLIVAGN-VLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74

Query: 367 ESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTI 426
            +W +G  +C++  S   + V  S+ TL  ++ DR+ AI  P R                
Sbjct: 75  GTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFR-----YQSLMTRARAK 129

Query: 427 LIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRF 486
           +I+  +W  + L +   +    +  ++D+                     Y     I   
Sbjct: 130 VIICTVWAISALVSFLPI---MMHWWRDEDPQALKCYQDPGCCDFVTNRAY----AIASS 182

Query: 487 LIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARK--KVAKTVLTFVVVFA 544
           +I + +PLLI+      + R      + +    + +T ++   +  K  KT+   + VF 
Sbjct: 183 IISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFT 242

Query: 545 MCFFPQHFFFLWFYINPTAPD 565
           +C+ P   FFL   +N    D
Sbjct: 243 LCWLP---FFLVNIVNVFNRD 260

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 78.6 bits (194), Expect = 4e-16
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 21/216 (9%)

Query: 2   SADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTN 61
           + DR+ AI  P R                +I+  +W  + L +   +    +  ++D+  
Sbjct: 106 AIDRYLAITSPFR-----YQSLMTRARAKVIICTVWAISALVSFLPI---MMHWWRDEDP 157

Query: 62  NNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG 121
                              Y     I   +I + +PLLI+      + R      + +  
Sbjct: 158 QALKCYQDPGCCDFVTNRAY----AIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDR 213

Query: 122 ELQGQTRQIRARK--KVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILR 179
             + +T ++   +  K  KT+   + VF +C+ P   FFL   +N    D   D    L 
Sbjct: 214 ASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLP---FFLVNIVNVFNRDLVPD---WLF 267

Query: 180 IVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCK 215
           +    LG+ NS +NPI +YC S  FRK F++ L   
Sbjct: 268 VAFNWLGYANSAMNPI-IYCRSPDFRKAFKRLLAFP 302

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score =  105 bits (262), Expect = 3e-24
 Identities = 60/373 (16%), Positives = 115/373 (30%), Gaps = 16/373 (4%)

Query: 271 MATEITKITNGDQIIINTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFIN 330
           M T I        +  +     D  P    + + +   V   I V+ +LGN  +      
Sbjct: 1   MKTIIALSYIFCLVFADYKDDDDGAPPI--MGSSVYITVELAIAVLAILGNVLVCWAVWL 58

Query: 331 HKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVS 390
           + +++NV N +++SLA  D+ V +  +PF  T+     +      C        +    S
Sbjct: 59  NSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFIACFVLVLTQSS 116

Query: 391 VFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVR 450
           +F+L A++ DR+ AI  PLR       G         I+A  W+ +    +  M      
Sbjct: 117 IFSLLAIAIDRYIAIRIPLR-----YNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNC 171

Query: 451 AFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS---LMARS 507
               +  N++          +         ++   F     VPLL++   Y    L AR 
Sbjct: 172 GQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARR 231

Query: 508 LILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDY 567
            +   ++    L    + I      A+                                 
Sbjct: 232 QLADLEDNWETLNDNLKVIEKADNAAQVKDA----LTKMRAAALDAQKATPPKLEDKSPD 287

Query: 568 NDFWHILRIMSSKIINSRNANARRFHRPSTYSSTRKWDSVSTTHNPNNLQMNTFRRAPQN 627
           +      R     ++   +   +  +      +    + + TT N    +     R+   
Sbjct: 288 SPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQ 347

Query: 628 DPVTMATEITKIT 640
             V  A  +  I 
Sbjct: 348 KEVHAAKSLAIIV 360

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 54.3 bits (130), Expect = 7e-08
 Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 7/130 (5%)

Query: 108 MARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTA 167
             +        +   L+     ++     AK++   V +FA+C+ P     +        
Sbjct: 324 AEQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLP---LHIINCFTFFC 380

Query: 168 PDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNAN 227
           PD  +    ++ +    L   NS +NP         FR+ F+K +   +  +        
Sbjct: 381 PDCSHAPLWLMYLA-IVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ---QEPFK 436

Query: 228 ARRFHRPSTY 237
           A   H    +
Sbjct: 437 AHHHHHHHHH 446

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 8/141 (5%)

Query: 2   SADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTN 61
           + DR+ AI  PLR       G         I+A  W+ +    +  M          +  
Sbjct: 124 AIDRYIAIRIPLR-----YNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGK 178

Query: 62  NNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS---LMARSLILSTKN 118
           N++          +         ++   F     VPLL++   Y    L AR  +   ++
Sbjct: 179 NHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLED 238

Query: 119 MPGELQGQTRQIRARKKVAKT 139
               L    + I      A+ 
Sbjct: 239 NWETLNDNLKVIEKADNAAQV 259

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score =  103 bits (258), Expect = 2e-23
 Identities = 65/303 (21%), Positives = 112/303 (36%), Gaps = 35/303 (11%)

Query: 287 NTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINH-KSMRNVPNIYILSL 345
                T     ++ +    + IV + I +  V GN  LV+  I   + ++ V N +I SL
Sbjct: 166 TFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGN-VLVITAIAKFERLQTVTNYFITSL 224

Query: 346 ALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAI 405
           A  DL++ L  VPF +     ++W +G   C+   S   + V  S+ TL  ++ DR+FAI
Sbjct: 225 ACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAI 284

Query: 406 VDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESC 465
             P +                +I+  +WI + L +   + + + RA   +  N    E+C
Sbjct: 285 TSPFK-----YQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETC 339

Query: 466 YPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM-------ARSLILSTKNMPGE 518
             F     Y       I    + +Y VPL+I+   YS +        + +  S      +
Sbjct: 340 CDFFTNQAY------AIASSIVSFY-VPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQ 392

Query: 519 LQGQTRQIRA--------------RKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAP 564
              Q  Q                   K  KT+   +  F +C+ P     +   I     
Sbjct: 393 NLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLI 452

Query: 565 DDY 567
              
Sbjct: 453 RKE 455

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 73.8 bits (181), Expect = 6e-14
 Identities = 54/259 (20%), Positives = 94/259 (36%), Gaps = 43/259 (16%)

Query: 2   SADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTN 61
           + DR+FAI  P +                +I+  +WI + L +   + + + RA   +  
Sbjct: 277 AVDRYFAITSPFK-----YQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAI 331

Query: 62  NNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM-------ARSLIL 114
           N    E+C  F     Y       I    + +Y VPL+I+   YS +        + +  
Sbjct: 332 NCYAEETCCDFFTNQAY------AIASSIVSFY-VPLVIMVFVYSRVFQEAKRQLQKIDK 384

Query: 115 STKNMPGELQGQTRQIRA--------------RKKVAKTVLTFVVVFAMCFFPQHFFFLW 160
           S      +   Q  Q                   K  KT+   +  F +C+ P   FF+ 
Sbjct: 385 SEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLP---FFIV 441

Query: 161 FYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKI 220
             ++    +        + I+   +G++NS  NP+ +YC S  FR  FQ+ L  + SS  
Sbjct: 442 NIVHVIQDNLIRK---EVYILLNWIGYVNSGFNPL-IYCRSPDFRIAFQELLCLRRSSL- 496

Query: 221 INSRNANARRFHRPSTYSS 239
                 N    +  +   S
Sbjct: 497 --KAYGNGYSSNGNTGEQS 513

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score =  102 bits (256), Expect = 2e-23
 Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 11/247 (4%)

Query: 287 NTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLA 346
           +        P    + + +   V   I V+ +LGN  +      + +++NV N +++SLA
Sbjct: 7   DAMGQPVGAPPI--MGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLA 64

Query: 347 LGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIV 406
             D+ V +  +PF   +     +      C        +    S+F+L A++ DR+ AI 
Sbjct: 65  AADIAVGVLAIPF--AITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIR 122

Query: 407 DPLRKLHSGIGGKRATRCTILIVAAIWIFAIL-CAIPSMTLSYVRAFKDDTNNNTLFESC 465
            PLR                 I+A  W+ +      P +  +     K+  N++      
Sbjct: 123 IPLRYNG-----LVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEG 177

Query: 466 YPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQ 525
                 +        V    F     VPLL++   Y  +  +              +  +
Sbjct: 178 QVACLFEDVVPMNYMVYFNFFACVL-VPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLR 236

Query: 526 IRARKKV 532
           ++  K  
Sbjct: 237 LKIYKDT 243

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 63.6 bits (154), Expect = 1e-10
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 110 RSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPD 169
           R+  + T    G        ++     AK++   V +FA+C+ P     +        PD
Sbjct: 367 RAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLP---LHIINCFTFFCPD 423

Query: 170 DYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANAR 229
             +    ++ +    L   NS +NP         FR+ F+K +   +  +        A 
Sbjct: 424 CSHAPLWLMYLA-IVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ---QEPFKAH 479

Query: 230 RFHRPST 236
             H    
Sbjct: 480 HHHHHHH 486

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 7/136 (5%)

Query: 2   SADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAIL-CAIPSMTLSYVRAFKDDT 60
           + DR+ AI  PLR                 I+A  W+ +      P +  +     K+  
Sbjct: 114 AIDRYIAIRIPLRYNG-----LVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGK 168

Query: 61  NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
           N++            +        V    F     VPLL++   Y  +  +         
Sbjct: 169 NHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVL-VPLLLMLGVYLRIFLAARRQLNIFE 227

Query: 121 GELQGQTRQIRARKKV 136
                +  +++  K  
Sbjct: 228 MLRIDEGLRLKIYKDT 243

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score =  100 bits (251), Expect = 1e-22
 Identities = 58/247 (23%), Positives = 103/247 (41%), Gaps = 16/247 (6%)

Query: 287 NTSLSTDFKPYSERLETYLVPI--VFAFIFVVGVLGNGTLVLI-FINHKSMRNVPNIYIL 343
           N S + D     +R E ++V +  V + I +  V GN  LV+      + ++ V N +I 
Sbjct: 22  NRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGN-VLVITAIAKFERLQTVTNYFIT 80

Query: 344 SLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFF 403
           SLA  DL++ L  VPF +     + W +G   C+   S   + V  S+ TL  ++ DR+F
Sbjct: 81  SLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYF 140

Query: 404 AIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFE 463
           AI  P +                +I+  +WI + L +   + + + RA   +  N    E
Sbjct: 141 AITSPFKYQS-----LLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE 195

Query: 464 SCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQT 523
           +C  F     Y        I   ++ + VPL+I+   YS + +               + 
Sbjct: 196 TCCDFFTNQAY-------AIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEG 248

Query: 524 RQIRARK 530
            +++  K
Sbjct: 249 LRLKIYK 255

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 63.6 bits (154), Expect = 9e-11
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 126 QTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCL 185
             +      K  KT+   +  F +C+ P   FF+   ++    +        + I+   +
Sbjct: 396 AYKFCLKEHKALKTLGIIMGTFTLCWLP---FFIVNIVHVIQDNLIRK---EVYILLNWI 449

Query: 186 GFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANARRFHRPSTYSS 239
           G++NS  NP+ +YC S  FR  FQ+ L  + SS        N    +  +   S
Sbjct: 450 GYVNSGFNPL-IYCRSPDFRIAFQELLCLRRSSL---KAYGNGYSSNGNTGEQS 499

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 12/133 (9%)

Query: 2   SADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTN 61
           + DR+FAI  P +                +I+  +WI + L +   + + + RA   +  
Sbjct: 135 AVDRYFAITSPFKYQS-----LLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAI 189

Query: 62  NNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG 121
           N    E+C  F     Y        I   ++ + VPL+I+   YS + +           
Sbjct: 190 NCYAEETCCDFFTNQAY-------AIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEM 242

Query: 122 ELQGQTRQIRARK 134
               +  +++  K
Sbjct: 243 LRIDEGLRLKIYK 255

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 97.5 bits (242), Expect = 1e-21
 Identities = 46/251 (18%), Positives = 99/251 (39%), Gaps = 17/251 (6%)

Query: 282 DQIIINTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLI-FINHKSMRNVPNI 340
           D    ++  S       +  E   + +V   + +V ++GN  LV++    ++ ++ V N 
Sbjct: 2   DDSTDSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGN-ILVMVSIKVNRHLQTVNNY 60

Query: 341 YILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSAD 400
           ++ SLA  DL++ +  +   +       WP G  +C +  +   +    SV  L  +S D
Sbjct: 61  FLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFD 120

Query: 401 RFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNT 460
           R+F +  PL         KR T+   +++AA W+ + +   P++             +  
Sbjct: 121 RYFCVTKPLTYPV-----KRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGE 175

Query: 461 LFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQ 520
               CY    I  + N    V     +  + +P++I+   Y  ++R+             
Sbjct: 176 ----CY----IQFFSN--AAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRI 225

Query: 521 GQTRQIRARKK 531
            +  +++  K 
Sbjct: 226 DEGLRLKIYKD 236

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 57.0 bits (137), Expect = 1e-08
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 13/107 (12%)

Query: 124 QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGF 183
                     KKV +T+L  ++ F + + P   + +   IN        +       +G+
Sbjct: 374 WDAYPPPSREKKVTRTILAILLAFIITWAP---YNVMVLINTFCAPCIPNTVWT---IGY 427

Query: 184 CLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANARR 230
            L +INS INP      + TF+K F+  L C         +N  A R
Sbjct: 428 WLCYINSTINPACYALCNATFKKTFKHLLMCH-------YKNIGATR 467

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 96.3 bits (239), Expect = 2e-21
 Identities = 43/235 (18%), Positives = 88/235 (37%), Gaps = 17/235 (7%)

Query: 302 ETYLVPIVFAFIFVVGVLGNGTLVLI-FINHKSMRNVPNIYILSLALGDLLVILTCVPFT 360
           +   + +V + I +V V  N  LVL    + + +  V N+YI+SL++ DL+V    +P  
Sbjct: 7   QLMPLVVVLSTICLVTVGLN-LLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMN 65

Query: 361 STVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKR 420
                   W  G  +C    S   ++   S+F++  L  DR+ ++  PLR L       R
Sbjct: 66  ILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLK-----YR 120

Query: 421 ATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRT 480
                   +   W  + L  IP +       +       ++               +   
Sbjct: 121 TKTRASATILGAWFLSFLWVIPIL------GWNHFMQQTSVRREDKCETDFYDVTWF--- 171

Query: 481 VIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKT 535
             +M  +I + +P L++  FY+ + +++             +  +++  K     
Sbjct: 172 -KVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGY 225

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 58.2 bits (140), Expect = 4e-09
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 126 QTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCL 185
               +   +K AK +   +  F +C+ P   +F++F +     +  N+  H+       L
Sbjct: 361 AYLHMNRERKAAKQLGFIMAAFILCWIP---YFIFFMVIAFCKNCCNEHLHM---FTIWL 414

Query: 186 GFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKI 220
           G+INS +NP+     +  F+K F++ L  +    +
Sbjct: 415 GYINSTLNPLIYPLCNENFKKTFKRILHIRSGENL 449

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 94.6 bits (234), Expect = 1e-20
 Identities = 39/250 (15%), Positives = 87/250 (34%), Gaps = 22/250 (8%)

Query: 287 NTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLA 346
           N +   +     E     L  +VF  I    +L N  ++L     K        +I +LA
Sbjct: 48  NYTGKLNISADKE-NSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLA 106

Query: 347 LGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIV 406
           L DLL  +        +    ++    +   + E +  +++  SVF+L A++ +R+  ++
Sbjct: 107 LSDLLAGVAYTANL-LLSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITML 165

Query: 407 DPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCY 466
                               L+++A W+ +++     +            N  +   SC 
Sbjct: 166 KMKLH------NGSNNFRLFLLISACWVISLILGGLPIM---------GWNCISALSSCS 210

Query: 467 PFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQI 526
                   P Y +  I+    ++  + L I+  +  + +     +   M    +G   +I
Sbjct: 211 TV-----LPLYHKHYILFCTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKI 265

Query: 527 RARKKVAKTV 536
               +   T+
Sbjct: 266 YKDTEGYYTI 275

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 52.2 bits (124), Expect = 4e-07
 Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 106 SLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINP 165
               R+  + T    G       +      + KTV+  + VF  C+ P    F+   ++ 
Sbjct: 389 QTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAP---LFILLLLDV 445

Query: 166 TAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRN 225
                  D           L  +NS  NPI     +   R+ F + +   +       + 
Sbjct: 446 GCKVKTCD-ILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPLEVLF---QG 501

Query: 226 ANARRFHRPS 235
            +    H   
Sbjct: 502 PHHHHHHHHH 511

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 94.4 bits (234), Expect = 1e-20
 Identities = 42/253 (16%), Positives = 98/253 (38%), Gaps = 21/253 (8%)

Query: 278 ITNGDQIIINTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNV 337
           ++     +  T  + +    S+        + +  + +  V GNG + +  +  ++++  
Sbjct: 13  LSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTT 72

Query: 338 PNIYILSLALGDLLVILTCVPFTSTVY-TFESWPYGESICKISESTKDISVGVSVFTLTA 396
            N  ++SLA+ DLLV    +P+   +  T   W +    C +  +   +    S++ L A
Sbjct: 73  TNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCA 132

Query: 397 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 456
           +S DR+ A+V P+   +    G+ + R   L++ A+W+ A   + P +            
Sbjct: 133 ISIDRYTAVVMPVH--YQHGTGQSSCRRVALMITAVWVLAFAVSCPLL------------ 178

Query: 457 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 516
                  +    P +    N     +I   ++ + +P  +    Y+ +   L    +   
Sbjct: 179 ----FGFNTTGDPTVCSISN--PDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNI 232

Query: 517 GELQGQTRQIRAR 529
            E+      +R +
Sbjct: 233 FEMLRIDEGLRLK 245

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 54.0 bits (129), Expect = 8e-08
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 126 QTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCL 185
                   KK  + V   +  F +C+ P   FFL   +N      +      L      L
Sbjct: 389 AYGVPLREKKATQMVAIVLGAFIVCWLP---FFLTHVLNTHCQTCHVSPE--LYSATTWL 443

Query: 186 GFINSCINPIALYCVSGTFRKYFQKYLFCK 215
           G++NS +NP+     +  FRK F K L C 
Sbjct: 444 GYVNSALNPVIYTTFNIEFRKAFLKILSCG 473

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 2e-11
 Identities = 85/550 (15%), Positives = 154/550 (28%), Gaps = 165/550 (30%)

Query: 204 FRKYFQKYLFCK---------MSSK----IINSRNA--NARR-FHRPSTYSSTRKWDSMS 247
           F   F     CK         +S +    II S++A     R F    +         + 
Sbjct: 25  FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 248 TTHNPN-NLQMNTFR---RAPQNDPVTMATEITKITNGDQIIINTSLSTDFKPYS-ERLE 302
                N    M+  +   R P         +  ++ N +Q+         F  Y+  RL+
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV---------FAKYNVSRLQ 135

Query: 303 TY---------LVPIVFAFIFVVGVLGNG--TLVL-IFINHKSMRNVPN-IYILSLA--- 346
            Y         L P     + + GVLG+G   + L + +++K    +   I+ L+L    
Sbjct: 136 PYLKLRQALLELRPA--KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 347 --------LGDLLVILTCVPFTSTV------------------YTFESWPYGESI----- 375
                   L  LL  +    +TS                       +S PY   +     
Sbjct: 194 SPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 376 -------------CKISESTKDISV--GVSVFTLTALSADRFFAIVDP-------LRKLH 413
                        CKI  +T+   V   +S  T T +S D     + P       L+ L 
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 414 SGIGGKRATRCTI--LIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNT----------- 460
                      T     ++   I A        T    +    D                
Sbjct: 313 CRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 461 ----LFESCYPFP---PIDGYPNYPRTVIIM--RFLIYYAVPLLIIACF-YSLMARSLIL 510
               +F+    FP    I      P  ++ +    +I   V +++     YSL+ +    
Sbjct: 370 EYRKMFDRLSVFPPSAHI------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 511 STKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDF 570
           ST ++P        ++     + ++++         F             P   D Y  +
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYN-IPKTFDSDDLI-------PPYLDQYF-Y 474

Query: 571 WHI----------------------LRIMSSKIINSRNANARRFHRPSTYSSTRKWDSVS 608
            HI                       R +  KI +   A        +T    + +    
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 609 TTHNPNNLQM 618
             ++P   ++
Sbjct: 535 CDNDPKYERL 544

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	647
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	100.0
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	100.0
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	100.0
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	100.0
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	100.0
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	100.0
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	100.0
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	100.0
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	100.0
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	100.0
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	100.0
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	100.0
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	100.0
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	100.0
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	100.0
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	100.0
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	100.0
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	100.0
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.95
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.94
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.94
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.93
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.93
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.92
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.92
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.91
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.91
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.91
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.91
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.91
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.91
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.91
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.91
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.91
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.9
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.89
2koe_A	40	Human cannabinoid receptor 1 - helix 7/8 peptide;	98.48
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	98.15
2ki9_A	33	Cannabinoid receptor 2; GPCR, G-protein coupled re	97.97
2ki9_A	33	Cannabinoid receptor 2; GPCR, G-protein coupled re	97.83
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	97.29
2koe_A	40	Human cannabinoid receptor 1 - helix 7/8 peptide;	96.85
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	96.29

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=100.00  E-value=1.5e-41  Score=362.38  Aligned_cols=298  Identities=19%  Similarity=0.293  Sum_probs=226.9

Q ss_pred             hhhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCC---CCccchhhHHHHHHHHHHhhcccceeeeee--eccccccc
Q psy9472         299 ERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMR---NVPNIYILSLALGDLLVILTCVPFTSTVYT--FESWPYGE  373 (647)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~---~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~--~~~~~~~~  373 (647)
                      +.....++.++|.+++++|++||+++++++.+++++|   +++|+|++|||++|++.+++.+|+.+....  .+.|.+|+
T Consensus        28 ~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~  107 (510)
T 4grv_A           28 DIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGD  107 (510)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhH
Confidence            3445678888999999999999999999998887655   678999999999999999999998776543  35699999


Q ss_pred             cccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeee
Q psy9472         374 SICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFK  453 (647)
Q Consensus       374 ~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~  453 (647)
                      ..|++..++..++..+|++++++||+|||+||++|++     |+...+++++..+++++|++++++++|+++.+......
T Consensus       108 ~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~-----~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~  182 (510)
T 4grv_A          108 AGCRGYYFLRDACTYATALNVASLSVARYLAICHPFK-----AKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRS  182 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-----CCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEecccc-----ccccccccccceeehHHHHHHHHHHHHHHHhhcccccc
Confidence            9999999999999999999999999999999999999     88899999999999999999999999998887665543


Q ss_pred             cCCCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----------------
Q psy9472         454 DDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG----------------  517 (647)
Q Consensus       454 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~----------------  517 (647)
                      .+. .......|.+..+.    .....+..+.+++.|++|+++|+++|.+|+++++++.+....                
T Consensus       183 ~~~-~~~~~~~c~~~~~~----~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  257 (510)
T 4grv_A          183 ADG-THPGGLVCTPIVDT----ATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTE  257 (510)
T ss_dssp             SSS-CCGGGEEEEECSCH----HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHHHHHHHHTCCEEEEEECTT
T ss_pred             cCC-CCCCcccccccccc----chhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc
Confidence            322 22334567654432    234566677778889999999999999999999865321000                


Q ss_pred             --------------------------------------------------------------------------------
Q psy9472         518 --------------------------------------------------------------------------------  517 (647)
Q Consensus       518 --------------------------------------------------------------------------------  517 (647)
                                                                                                      
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  337 (510)
T 4grv_A          258 GYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINM  337 (510)
T ss_dssp             SCEEEETTEECCCSSSHHHHHHSCCC---CCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCSHHHHHHHHH
T ss_pred             cccccccccccCCCCCCCccccccCcCCCCCCCCcccCCccccccCCCCcccccccccCCCCCCCcCccccccccccCCc
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------cccchhhhhHhhhhhhHHHHHHHHH
Q psy9472         518 -------------------------------------------------------ELQGQTRQIRARKKVAKTVLTFVVV  542 (647)
Q Consensus       518 -------------------------------------------------------~~~~~~~~~~~~~k~~~~~~~i~~~  542 (647)
                                                                             ......+..++++|++||+++|+++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~erk~~k~L~iVv~~  417 (510)
T 4grv_A          338 VFQMGETGVAGFTNSLRMLNNKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSGSVQALRHGVLVARAVVIA  417 (510)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTTCHHHHHHHHHSSCSCCSSHHHHHHHHHHHHHSSSGGGTTSTTTHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCCCccccccccCCCcccccccccccccccCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence                                                                   0000011224678999999999999


Q ss_pred             HhhccccHHHHHHHHHhCCCCCCCchh------HHHHHHHHhhhhhccC-chhHHhhcCCccccccccccCCC
Q psy9472         543 FAMCFFPQHFFFLWFYINPTAPDDYND------FWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSVS  608 (647)
Q Consensus       543 f~~~w~P~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~~  608 (647)
                      |++||+||+++.++..+.+........      ...+..++++  +||| ||+||.|.++.||+.+++.++|+
T Consensus       418 F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y--~NS~iNPiIY~~~n~~FR~aFk~iL~C~  488 (510)
T 4grv_A          418 FVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAY--ASSAINPILYNLVSANFRQVFLSTLACL  488 (510)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHSCCCCC--------
T ss_pred             HHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCHHHHHHHHHHHhhc
Confidence            999999999999998887654433211      2233445566  9999 99999998888888877766543

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=100.00  E-value=7.4e-39  Score=327.72  Aligned_cols=292  Identities=24%  Similarity=0.367  Sum_probs=231.1

Q ss_pred             hhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccch
Q psy9472         301 LETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISE  380 (647)
Q Consensus       301 ~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  380 (647)
                      ....+..+++.+++++|++||+++++++.+++++|++.|++++|||++|++.+++.+|..+.....+.|..++..|++..
T Consensus        30 ~~~~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~  109 (364)
T 2ks9_A           30 WQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHN  109 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhHH
Confidence            34456688899999999999999999999999999999999999999999998888888776666678999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCc
Q psy9472         381 STKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNT  460 (647)
Q Consensus       381 ~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (647)
                      ++..++..+|++++++||+|||++|++|++     |+  .++++....++++|++++++++|.+........       .
T Consensus       110 ~~~~~~~~~s~~~l~~isidRy~aI~~P~~-----~~--~~~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~-------~  175 (364)
T 2ks9_A          110 FFPIAAVFASIYSMTAVAFDRYMAIIHPLQ-----PR--LSATATKVVICVIWVLALLLAFPQGYYSTTETM-------P  175 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-----TS--CCHHHHHHHHHHHHHHHHHHHTTTTTTSCCCBC-------T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cc--cccchHHHHHHHHHHHHHHHHhHHHHHhhheec-------C
Confidence            999999999999999999999999999999     54  578888899999999999999988654332211       1


Q ss_pred             eeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHH
Q psy9472         461 LFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFV  540 (647)
Q Consensus       461 ~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~  540 (647)
                      ....|...........+...|.+...++.+++|+++++++|..|+++++++++..... ...+++.++++|++|++++++
T Consensus       176 ~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~v~  254 (364)
T 2ks9_A          176 SRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSS-DRYHEQVSAKRKVVKMMIVVV  254 (364)
T ss_dssp             TCSSBCCCCSCCCTTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSCCCSSSSS-SCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEeecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-hhhhhhHHhhhhHHHHHHHHH
Confidence            2235765544433334456677777888899999999999999999998755433222 223345577889999999999


Q ss_pred             HHHhhccccHHHHHHHHHhCCCCCCC--chhHHHHHHHHhhhhhccC-chhHHhhcCCccccccccccCCCC
Q psy9472         541 VVFAMCFFPQHFFFLWFYINPTAPDD--YNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSVST  609 (647)
Q Consensus       541 ~~f~~~w~P~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~~~  609 (647)
                      ++|++||+|+.+..++..+.+.....  ..........+.+  +|++ ||+||.++++.+|...++.++++.
T Consensus       255 ~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~ns~~NPiiY~~~~~~fR~~~~~~~~~~~  324 (364)
T 2ks9_A          255 CTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAM--SSTMYNPIIYCCLNDRFRLGFKHAFRCCP  324 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSCSSSCCHHHHHHHHHHHH--HHHHHHHHHHHHHCHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHhhcC
Confidence            99999999999999988876543221  2223333444455  9999 999999988888887777665543

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=100.00  E-value=3.5e-39  Score=343.80  Aligned_cols=290  Identities=20%  Similarity=0.300  Sum_probs=227.4

Q ss_pred             hhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccch
Q psy9472         301 LETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISE  380 (647)
Q Consensus       301 ~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  380 (647)
                      ....+..+++.+++++|++||+++++++.+++++|+++|+|++|||++|++.+++.+|+.+.....+.|.+|...|++..
T Consensus        38 ~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~~  117 (500)
T 2rh1_A           38 VWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWT  117 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHHH
Confidence            34466788999999999999999999999999999999999999999999999988998887777788999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccch-heeeeeeecCCCCC
Q psy9472         381 STKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMT-LSYVRAFKDDTNNN  459 (647)
Q Consensus       381 ~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~  459 (647)
                      ++..++..+|++++++||+|||++|++|++     |+...+++++..+++++|++++++++++++ .+....       .
T Consensus       118 ~~~~~~~~~Si~~l~~isidRy~aI~~Pl~-----~~~~~t~~~~~~~i~~~W~~s~~~~~~p~~~~~~~~~-------~  185 (500)
T 2rh1_A          118 SIDVLCVTASIETLCVIAVDRYFAITSPFK-----YQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRAT-------H  185 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSST-----TSCSSCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCC-------S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHeeccCc-----CCeeecccceeehhhHHHHHHHHHHhcchheeeeccc-------c
Confidence            999999999999999999999999999999     888899999999999999999999864443 322111       1


Q ss_pred             ceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CC------------Cc----
Q psy9472         460 TLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKN-----MP------------GE----  518 (647)
Q Consensus       460 ~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~-----~~------------~~----  518 (647)
                      .....|........ ......|.++..++.+++|+++|+++|.+|++.++++.++     ..            +.    
T Consensus       186 ~~~~~c~~~~~~~~-~~~~~~y~~~~~~~~~~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (500)
T 2rh1_A          186 QEAINCYAEETCCD-FFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIG  264 (500)
T ss_dssp             HHHHHHHHCTTCCC-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHTCCEEEEEECTTSCEEEE
T ss_pred             cCcceecccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCC
Confidence            11123443221111 2234567777788889999999999999999999987654     00            00    


Q ss_pred             ----------------------------------------cc--------------------------------------
Q psy9472         519 ----------------------------------------LQ--------------------------------------  520 (647)
Q Consensus       519 ----------------------------------------~~--------------------------------------  520 (647)
                                                              +.                                      
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (500)
T 2rh1_A          265 IGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGE  344 (500)
T ss_dssp             TTEEEESCSCHHHHHHHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcccccccccccccccCCCCCCccchhhhhhcccCCccccccccccCCCCCCCCCcccccccchhhcccCCCCc
Confidence                                                    00                                      


Q ss_pred             --------------------------------------------------chhhhhHhhhhhhHHHHHHHHHHhhccccH
Q psy9472         521 --------------------------------------------------GQTRQIRARKKVAKTVLTFVVVFAMCFFPQ  550 (647)
Q Consensus       521 --------------------------------------------------~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~  550 (647)
                                                                        ...+..++|+|++|++++++++|++||+|+
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ka~ktl~ivv~~F~icWlP~  424 (500)
T 2rh1_A          345 TGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPF  424 (500)
T ss_dssp             HHHHTCHHHHHHHHTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSGGGTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCchhhhhcccccccccccccccccCCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                              000001367899999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCccccccccccCCC
Q psy9472         551 HFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSVS  608 (647)
Q Consensus       551 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~~  608 (647)
                      .++.++..+....  .....+.+..++++  +||+ ||+||.| ++.+|...++.++++
T Consensus       425 ~i~~l~~~~~~~~--~~~~~~~~~~~L~y--~NS~iNPiIY~~-n~~FR~af~~il~~~  478 (500)
T 2rh1_A          425 FIVNIVHVIQDNL--IRKEVYILLNWIGY--VNSGFNPLIYCR-SPDFRIAFQELLCLR  478 (500)
T ss_dssp             HHHHHHHHHSTTS--SCHHHHHHHHHHHH--HGGGTHHHHGGG-SHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHcCCc--ccHHHHHHHHHHHH--HHHhhcchhhhc-cHHHHHHHHHHHhhh
Confidence            9999999887432  23344556667777  9999 9999986 777777777766443

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=100.00  E-value=1.1e-37  Score=317.07  Aligned_cols=291  Identities=16%  Similarity=0.246  Sum_probs=233.3

Q ss_pred             hhhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecccccccccccc
Q psy9472         299 ERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKI  378 (647)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~  378 (647)
                      ++....+..+++.+++++|++||+++++++.+++++|++.|++++|||++|++.++...|..+.....+.|..++..|++
T Consensus        34 ~~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~  113 (349)
T 1u19_A           34 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNL  113 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHHHH
Confidence            45566788889999999999999999999999999999999999999999999999888887766666789999999999


Q ss_pred             chhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCC
Q psy9472         379 SESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNN  458 (647)
Q Consensus       379 ~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  458 (647)
                      ..++..++..+|++++++||+|||++|++|++     |+. .+++++...++++|++++++++|+++++........   
T Consensus       114 ~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~-----~~~-~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~---  184 (349)
T 1u19_A          114 EGFFATLGGEIALWSLVVLAIERYVVVCKPMS-----NFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGM---  184 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSS-----SCC-CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETT---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHheeeCCcc-----cee-eccchhHHHHHHHHHHHHHHHHHHHHheeeeeccCC---
Confidence            99999999999999999999999999999999     655 688999999999999999999998876543322211   


Q ss_pred             CceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHH
Q psy9472         459 NTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLT  538 (647)
Q Consensus       459 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~  538 (647)
                         ...|...............+.....++.+++|+++++++|.+|+++++++.++...    +.+..++++|.+++++.
T Consensus       185 ---~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~  257 (349)
T 1u19_A          185 ---QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQE----SATTQKAEKEVTRMVII  257 (349)
T ss_dssp             ---TTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSCS----SSHHHHHHHHHHHHHHH
T ss_pred             ---ceeecccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc----chhhHHHHHHHHHHHHH
Confidence               23676544332222234566677777889999999999999999999876553322    23344677899999999


Q ss_pred             HHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCccccccccccCCC
Q psy9472         539 FVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSVS  608 (647)
Q Consensus       539 i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~~  608 (647)
                      ++++|++||+|+.+..++..+....... .........+..  +|++ ||+||.++++.+|...++.+++.
T Consensus       258 i~~~f~i~~~P~~i~~~~~~~~~~~~~~-~~~~~~~~~l~~--~ns~~nPiiY~~~~~~fR~~~~~~~~c~  325 (349)
T 1u19_A          258 MVIAFLICWLPYAGVAFYIFTHQGSDFG-PIFMTIPAFFAK--TSAVYNPVIYIMMNKQFRNCMVTTLCCG  325 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTSCCC-HHHHHHHHHHGG--GGGTHHHHHHHHTCHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHHhHhheecCCcccc-hHHHHHHHHHHH--HHHHHhHHHHHHHhHHHHHHHHHHhccc
Confidence            9999999999999998887776443322 223333444444  9999 99999999888888877766543

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.4e-38  Score=332.90  Aligned_cols=298  Identities=19%  Similarity=0.282  Sum_probs=220.3

Q ss_pred             hhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeee-ecccccccccccc
Q psy9472         300 RLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT-FESWPYGESICKI  378 (647)
Q Consensus       300 ~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~-~~~~~~~~~~C~~  378 (647)
                      .....++.+++.+++++|++||+++++++.+++++++++|+|++|||++|++.++. +|+...... .+.|.++...|++
T Consensus        17 ~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~-~~~~~~~~~~~~~~~~~~~~C~~   95 (484)
T 3vw7_A           17 SWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSV-LPFKISYYFSGSDWQFGSELCRF   95 (484)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTT-HHHHHHHHHTTSCCCSCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcccchhHHhH
Confidence            34556888999999999999999999999999999999999999999999999655 555444333 3479999999999


Q ss_pred             chhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCC
Q psy9472         379 SESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNN  458 (647)
Q Consensus       379 ~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  458 (647)
                      ..++..++..+|++++++||+|||++|++|++     |+...+++++..+++++|++++++++|+++.........    
T Consensus        96 ~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~-----~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~----  166 (484)
T 3vw7_A           96 VTAAFYCNMYASILLMTVISIDRFLAVVYPMQ-----SLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQVPG----  166 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------CCHHHHHHHHHHHHHHHHHHHHHHHTSCCEEEETT----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHheEEEcccc-----cccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC----
Confidence            99999999999999999999999999999999     888899999999999999999999999988766544321    


Q ss_pred             CceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------------c------
Q psy9472         459 NTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG--------------E------  518 (647)
Q Consensus       459 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~--------------~------  518 (647)
                       .....|...........+...|.++..++.+++|+++|+++|..|++.++++.+....              .      
T Consensus       167 -~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti  245 (484)
T 3vw7_A          167 -LGITTCHDVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSANIFEMLRIDEGLRLKIYKNTEGYYTI  245 (484)
T ss_dssp             -TTEEEESSSCSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHCCEEEEEECTTSCEEE
T ss_pred             -CCCceeeccCCccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhHHHHhhhhccchhhhhccccccceee
Confidence             2235787655544333344446667778889999999999999999999887641000              0      


Q ss_pred             --------------------------------------------------------------------------------
Q psy9472         519 --------------------------------------------------------------------------------  518 (647)
Q Consensus       519 --------------------------------------------------------------------------------  518 (647)
                                                                                                      
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  325 (484)
T 3vw7_A          246 GIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMG  325 (484)
T ss_dssp             ETTEEEESSSCHHHHHHHHHHHHTSCCSSBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             eccccccCCcchhcccccccccccccCCCCCCcccccccccccccccccccccccccCcccccccccccchhhccccccC
Confidence                                                                                            


Q ss_pred             -------------------------------------------------ccchhhhhHhhhhhhHHHHHHHHHHhhcccc
Q psy9472         519 -------------------------------------------------LQGQTRQIRARKKVAKTVLTFVVVFAMCFFP  549 (647)
Q Consensus       519 -------------------------------------------------~~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P  549 (647)
                                                                       +.....+.++++|++||+++++++|++||+|
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~r~~k~l~~v~~~F~icwlP  405 (484)
T 3vw7_A          326 ETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYANRSKKSRALFLSAAVFCIFIICFGP  405 (484)
T ss_dssp             HHHHHTTHHHHHHHHTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHCSSHHHHCHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             ccccccchhhhhhhhccchhhhhhhhhhhhhhccCcccccCccceeecchhccccchhHHHHHHHHHHHHHHHHHHHhhH
Confidence                                                             0000013356689999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCchh---HHHHHHHHhhhhhccC-chhHHhhcCCccccccccccCCCCC
Q psy9472         550 QHFFFLWFYINPTAPDDYND---FWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSVSTT  610 (647)
Q Consensus       550 ~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~~~~  610 (647)
                      +.++.++..+..........   ...+..++++  +|++ ||+||.++++.+|...++.+++.+.
T Consensus       406 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~--~ns~iNPiIY~~~~~~fR~~~~~ll~~~~~  468 (484)
T 3vw7_A          406 TNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSS--ISCCIDPLIYYYASSECQRYVYSILCCKES  468 (484)
T ss_dssp             HHHHHHHHHHTCTTCTTSHHHHHHHHHHHHHHT--THHHHHHHHHHHTSSCC-------------
T ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHHHHHHH--hccccchHHHHHhhHHHHHHHHHHHhhccC
Confidence            99999998766443333221   2223344444  9999 9999999999999998887655443

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=100.00  E-value=7e-38  Score=335.10  Aligned_cols=284  Identities=17%  Similarity=0.216  Sum_probs=218.9

Q ss_pred             hhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchh
Q psy9472         302 ETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISES  381 (647)
Q Consensus       302 ~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  381 (647)
                      ...+..+++.+++++|++||+++++++.+++++|+++|+|++|||++|++.+++..|..+.. ....|..+...|.+..+
T Consensus        62 ~~~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~~~c~~~~~  140 (520)
T 3v2y_A           62 SIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQWFLREG  140 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCccccchHHH
Confidence            34678899999999999999999999999999999999999999999999998888876655 45678889999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCce
Q psy9472         382 TKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTL  461 (647)
Q Consensus       382 ~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (647)
                      +..++..+|++++++||+|||+||+ |++     |+...+++++..+++++|++++++++|+++++...         ..
T Consensus       141 ~~~~~~~~S~~~l~~isidRy~aI~-p~~-----~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~---------~~  205 (520)
T 3v2y_A          141 SMFVALSASVFSLLAIAIERYITML-KMK-----LHNGSNNFRLFLLISACWVISLILGGLPIMGWNCI---------SA  205 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC-C------------CCHHHHHHHHHHHHHHHHHHHTTTTTCBCT---------TC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhEEe-ccc-----cccccchhHHHHHHHHHHHHHHHHHHHHHHeeccc---------cC
Confidence            9999999999999999999999999 999     88899999999999999999999999988765432         11


Q ss_pred             eeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCCC-------------c
Q psy9472         462 FESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILST----------KNMPG-------------E  518 (647)
Q Consensus       462 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~----------~~~~~-------------~  518 (647)
                      ...|....+     .....|.++ .++.+++|+++|+++|.+|++.++++.          .+...             .
T Consensus       206 ~~~C~~~~~-----~~~~~~~~~-~~~~~~lPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~t~~~g~  279 (520)
T 3v2y_A          206 LSSCSTVLP-----LYHKHYILF-CTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGH  279 (520)
T ss_dssp             GGGBCSSST-----TBBHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCEECSSSSEEETTTE
T ss_pred             CCcccccCC-----ccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccccceeEeccc
Confidence            236764432     223444433 456799999999999999999999875          00000             0


Q ss_pred             c-------------------------------------------------------------------------------
Q psy9472         519 L-------------------------------------------------------------------------------  519 (647)
Q Consensus       519 ~-------------------------------------------------------------------------------  519 (647)
                      .                                                                               
T Consensus       280 ~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  359 (520)
T 3v2y_A          280 LLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGV  359 (520)
T ss_dssp             ECCSSSCHHHHHHHHHHHHTSCCTTCCCHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHSCHHHHHHHHHHHHHSCHHHH
T ss_pred             ccccccccccccchhhhHHHHhcCCcccHHHhhhHHHhccccccccccccccCCCcCCccchhhhHHHHHHHHccCCCcc
Confidence            0                                                                               


Q ss_pred             ---c--------------------------chhh------------------hhHhhhhhhHHHHHHHHHHhhccccHHH
Q psy9472         520 ---Q--------------------------GQTR------------------QIRARKKVAKTVLTFVVVFAMCFFPQHF  552 (647)
Q Consensus       520 ---~--------------------------~~~~------------------~~~~~~k~~~~~~~i~~~f~~~w~P~~i  552 (647)
                         .                          ...+                  +.++++|+++|+++++++|++||+|+++
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~F~vcw~P~~i  439 (520)
T 3v2y_A          360 AGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFI  439 (520)
T ss_dssp             HTCHHHHHHHHTTCHHHHHHHHHHSHHHHHSHHHHHHHHHHHHHCSGGGTCSSTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhhHhhhhhccchhhhcccchhhHHHHhhcchhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0                          0000                  0124789999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCccccccccccCCCC
Q psy9472         553 FFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSVST  609 (647)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~~~  609 (647)
                      +.++..+.............+..++++  +|+| ||+||.|+++.+|...++.++++.
T Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~l~~--~ns~~NPiiY~~~~~~fr~~~~~~~~~~~  495 (520)
T 3v2y_A          440 LLLLDVGCKVKTCDILFRAEYFLVLAV--LNSGTNPIIYTLTNKEMRRAFIRIMGRPL  495 (520)
T ss_dssp             HHHHHHTSCTTTCSTTTSCHHHHHHHH--HGGGTHHHHHHHHCHHHHHHHHTTCCSCC
T ss_pred             HHHHHHHcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHcCHHHHHHHHHHHHHhc
Confidence            999988876433333333334455666  9999 999999999888888887765543

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=100.00  E-value=1.3e-37  Score=333.11  Aligned_cols=293  Identities=20%  Similarity=0.350  Sum_probs=232.1

Q ss_pred             hhhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecccccccccccc
Q psy9472         299 ERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKI  378 (647)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~  378 (647)
                      ......+..+++.+++++|++||+++++++.+++++|+++|+|++|||++|++.+ +.+|+.+.... .+|.++...|++
T Consensus        44 ~~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~-~~~~~~~~~C~~  121 (502)
T 3odu_A           44 ANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAV-ANWYFGNFLCKA  121 (502)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHH-TCCCSHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHh-cCCcCCchhhhh
Confidence            3456778899999999999999999999999999999999999999999999995 57787665443 479999999999


Q ss_pred             chhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCC
Q psy9472         379 SESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNN  458 (647)
Q Consensus       379 ~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  458 (647)
                      ..++..++..+|++++++||+|||++|++|++     |+...+++++..+++++|++++++++|+++.........    
T Consensus       122 ~~~~~~~~~~~s~~~l~~is~dRy~ai~~P~~-----~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~----  192 (502)
T 3odu_A          122 VHVIYTVNLYSSVWILAFISLDRYLAIVHATN-----SQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADD----  192 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS-----CHHHHHHHHHTHHHHHTHHHHHHTTHHHHHHEEEEECSS----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhheecccc-----cccccchhHHHHhhhHHHHHHHHHHHHHHHheeeeccCC----
Confidence            99999999999999999999999999999999     888999999999999999999999999988765544322    


Q ss_pred             CceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-------------------
Q psy9472         459 NTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGEL-------------------  519 (647)
Q Consensus       459 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~-------------------  519 (647)
                         ...|......   ..+...+.+...++.+++|+++++++|..|+++++++.++.....                   
T Consensus       193 ---~~~C~~~~~~---~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (502)
T 3odu_A          193 ---RYICDRFYPN---DLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYT  266 (502)
T ss_dssp             ---SEEEEECCSS---HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHGGGCSCCHHHHHHHHTCCEEEEEECTTSCEE
T ss_pred             ---ceEEeecCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhccccccccCCCccccc
Confidence               2468754433   234556667777888999999999999999999998765421000                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy9472         520 --------------------------------------------------------------------------------  519 (647)
Q Consensus       520 --------------------------------------------------------------------------------  519 (647)
                                                                                                      
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (502)
T 3odu_A          267 IGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQM  346 (502)
T ss_dssp             EETTEEEECSSCHHHHHHHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             cccccccCcCccccccchhhhcccCcchhhhhhccccccchhhcccccccccccCccccccccCCCCCCcchhhhhhhhh
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------cchhhhhHhhhhhhHHHHHHHHHHhhcc
Q psy9472         520 ----------------------------------------------------QGQTRQIRARKKVAKTVLTFVVVFAMCF  547 (647)
Q Consensus       520 ----------------------------------------------------~~~~~~~~~~~k~~~~~~~i~~~f~~~w  547 (647)
                                                                          ...+.+.++++|+++++++++++|++||
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw  426 (502)
T 3odu_A          347 GETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACW  426 (502)
T ss_dssp             HHHHHHTCHHHHHHHHHTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHCSSHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhcccCccccchhhhchhhhhccccccccccccCcchhhhccccccccccchhhhhhHhHHHHHHHHHHHHHHHHHHh
Confidence                                                                0000223457899999999999999999


Q ss_pred             ccHHHHHHHHHhCCCCCCC----chhHH----HHHHHHhhhhhccC-chhHHhhcCCccccccccccCCCCC
Q psy9472         548 FPQHFFFLWFYINPTAPDD----YNDFW----HILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSVSTT  610 (647)
Q Consensus       548 ~P~~i~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~~~~  610 (647)
                      +|+.++.++..+.......    .....    .+..++.+  +|++ ||+||.++++.+|...++.+++++.
T Consensus       427 ~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--~ns~~NPiIY~~~~~~fR~~~~~ll~~~~~  496 (502)
T 3odu_A          427 LPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAF--FHCCLNPILYAFLGAKFKTSAQHALTSGRP  496 (502)
T ss_dssp             HHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHT--THHHHHHHHTTTTTCCCCCCHHHHHSSCSS
T ss_pred             hhHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHH--HhcccchhhhhhcCHHHHHHHHHHhccCCc
Confidence            9999999887764222111    11111    23333444  9999 9999999999999998887755443

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=100.00  E-value=7.9e-38  Score=333.58  Aligned_cols=297  Identities=19%  Similarity=0.216  Sum_probs=230.4

Q ss_pred             hhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccch
Q psy9472         301 LETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISE  380 (647)
Q Consensus       301 ~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  380 (647)
                      ....+..+++.+++++|++||+++++++.++++++++.++|++|||++|++.+++.+|+.+...  ..|..+...|++..
T Consensus        19 ~~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~--~~~~~~~~~C~~~~   96 (488)
T 3eml_A           19 MGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFIA   96 (488)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHT--TCCEECHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccchHHHHHH
Confidence            3456788899999999999999999999999999999999999999999999998888766533  36788889999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCc
Q psy9472         381 STKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNT  460 (647)
Q Consensus       381 ~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (647)
                      ++..++..+|++++++||+|||++|++|++     |+...+++++..+++++|++++++++|+++++........  ...
T Consensus        97 ~~~~~~~~~s~~~l~~is~dRy~aI~~P~~-----~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~--~~~  169 (488)
T 3eml_A           97 CFVLVLTQSSIFSLLAIAIDRYIAIRIPLR-----YNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKE--GKN  169 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCGGG-----STTTSCHHHHHHHHHHHHHHHHHHHTTGGGTCCSSCC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhheeEecccc-----cccccCHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc--ccc
Confidence            999999999999999999999999999999     8889999999999999999999999998876654332211  111


Q ss_pred             eeeeeecCCCCC--CCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-------------------
Q psy9472         461 LFESCYPFPPID--GYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGEL-------------------  519 (647)
Q Consensus       461 ~~~~C~~~~~~~--~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~-------------------  519 (647)
                      ....|.......  ........+.++.+++.+++|+++++++|..|+++++++.++.....                   
T Consensus       170 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (488)
T 3eml_A          170 HSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTI  249 (488)
T ss_dssp             -CCSSCTTCEECCHHHHSCHHHHHTTTHHHHTHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTCCEEEEEECTTSCEEE
T ss_pred             cccccccccceeeccccccchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhccccccchhhccccccceec
Confidence            112343221100  00122334555667888999999999999999999987754321000                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy9472         520 --------------------------------------------------------------------------------  519 (647)
Q Consensus       520 --------------------------------------------------------------------------------  519 (647)
                                                                                                      
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (488)
T 3eml_A          250 GIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMG  329 (488)
T ss_dssp             ETTEEEESSSCHHHHHHHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred             cccccCCCCccccccccccccCCCCCCCCCCChhhhccCcccCccccccccCCCCCCCCCcCCcchHHHhhhhccccCCC
Confidence                                                                                            


Q ss_pred             ---------------------------------------------------cchhhhhHhhhhhhHHHHHHHHHHhhccc
Q psy9472         520 ---------------------------------------------------QGQTRQIRARKKVAKTVLTFVVVFAMCFF  548 (647)
Q Consensus       520 ---------------------------------------------------~~~~~~~~~~~k~~~~~~~i~~~f~~~w~  548 (647)
                                                                         ....+..++++|+++++++++++|++||+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~F~icw~  409 (488)
T 3eml_A          330 ETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWL  409 (488)
T ss_dssp             HHHHTTCHHHHHHHHTTCHHHHHHHHTTSHHHHHCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccCCCCcchhhhhccccccccCcccccCcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                                                               00111246789999999999999999999


Q ss_pred             cHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCccccccccccCCC
Q psy9472         549 PQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSVS  608 (647)
Q Consensus       549 P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~~  608 (647)
                      |+.++.++..+.+...........+..++.+  +|++ ||+||.++++.+|...++.++++
T Consensus       410 P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~--~ns~~NPiIY~~~~~~fR~~~~~l~~~~  468 (488)
T 3eml_A          410 PLHIINCFTFFCPDCSHAPLWLMYLAIVLSH--TNSVVNPFIYAYRIREFRQTFRKIIRSH  468 (488)
T ss_dssp             HHHHHHHHHHHCTTSCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHhccCccccccHHHHHHHHHHHH--HHhhhchhhhhhcCHHHHHHHHHHHhhc
Confidence            9999999998876554444445555556666  9999 99999998888888777665443

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=100.00  E-value=1.7e-37  Score=329.01  Aligned_cols=291  Identities=19%  Similarity=0.281  Sum_probs=232.7

Q ss_pred             hhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccch
Q psy9472         301 LETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISE  380 (647)
Q Consensus       301 ~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  380 (647)
                      ....+..+++.+++++|++||+++++++.++++++++.|+|++|||++|++.+++.+|+.+.....+.|..+...|++..
T Consensus        21 ~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~  100 (467)
T 3uon_A           21 FEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWL  100 (467)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHhHHH
Confidence            44577888999999999999999999999999999999999999999999999999998888777788999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCc
Q psy9472         381 STKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNT  460 (647)
Q Consensus       381 ~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (647)
                      ++..++..+|++++++||+|||++|++|++     |+...+++++..+++++|++++++++|+++++........    .
T Consensus       101 ~~~~~~~~~s~~~l~~isidRy~ai~~P~~-----~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~----~  171 (467)
T 3uon_A          101 ALDYVVSNASVMNLLIISFDRYFCVTKPLT-----YPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRT----V  171 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-----SGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC----C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----cccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC----C
Confidence            999999999999999999999999999999     8889999999999999999999999998776543211111    1


Q ss_pred             eeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---------------------
Q psy9472         461 LFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGEL---------------------  519 (647)
Q Consensus       461 ~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~---------------------  519 (647)
                      ....|.....      ....+.++..++.+++|+++++++|..|++.++++.+......                     
T Consensus       172 ~~~~C~~~~~------~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (467)
T 3uon_A          172 EDGECYIQFF------SNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIGI  245 (467)
T ss_dssp             CSSCCCCGGG------GSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHSCCEEEEEECTTSCEEEET
T ss_pred             CCCcceeecC------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccccceeeccchhhccccc
Confidence            1234643222      2345677778889999999999999999999998754110000                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy9472         520 --------------------------------------------------------------------------------  519 (647)
Q Consensus       520 --------------------------------------------------------------------------------  519 (647)
                                                                                                      
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (467)
T 3uon_A          246 GHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGET  325 (467)
T ss_dssp             TEECCCCSSHHHHHHHHHHHHSSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             CcccccCCcccccccccccccccCCCCcccccccccccccccchhhcccccCCCCCccccccccccccccccceeecccc
Confidence                                                                                            


Q ss_pred             ------------------------------------------------cchhhhhHhhhhhhHHHHHHHHHHhhccccHH
Q psy9472         520 ------------------------------------------------QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQH  551 (647)
Q Consensus       520 ------------------------------------------------~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~  551 (647)
                                                                      ....+..++++|++|++++++++|++||+|+.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~iv~~F~icw~P~~  405 (467)
T 3uon_A          326 GVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYN  405 (467)
T ss_dssp             HHGGGHHHHHHHHTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSTTSCCCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccccchhhhcCccccccccccccccCCCCcccccccchhhcccccccccchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence                                                            00000013578999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCccccccccccCCCCC
Q psy9472         552 FFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSVSTT  610 (647)
Q Consensus       552 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~~~~  610 (647)
                      ++.++..+.....  ......+..++.+  +|++ ||+||.++++.+|...++.++|+.+
T Consensus       406 i~~~~~~~~~~~~--~~~~~~i~~~L~~--~ns~~NPiIY~~~~~~fR~~~~~ll~c~~~  461 (467)
T 3uon_A          406 VMVLINTFCAPCI--PNTVWTIGYWLCY--INSTINPACYALCNATFKKTFKHLLMCHYK  461 (467)
T ss_dssp             HHHHHHHHCSTTS--CHHHHHHHHHHHH--HTTTHHHHHHHHHCHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHhccc--chHHHHHHHHHHH--HhhhhhhHHHHHcCHHHHHHHHHHHhhhcc
Confidence            9999998875432  2334455555555  9999 9999999999988888887755443

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=100.00  E-value=9.7e-38  Score=330.61  Aligned_cols=291  Identities=24%  Similarity=0.404  Sum_probs=231.0

Q ss_pred             hhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccch
Q psy9472         301 LETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISE  380 (647)
Q Consensus       301 ~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  380 (647)
                      ....++.+++.+++++|++||+++++++.+++++++++|+|++|||++|++.++. +|+.+.....+.|.++...|++..
T Consensus        15 ~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~~~~~~~~~C~~~~   93 (464)
T 4dkl_A           15 VTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMGTWPFGNILCKIVI   93 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCCSCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcccccchhhhHH
Confidence            4467888999999999999999999999999999999999999999999999776 888877777788999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCc
Q psy9472         381 STKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNT  460 (647)
Q Consensus       381 ~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (647)
                      ++..++..+|++++++||+|||++|++|++     |+...+++++..+++++|++++++++|.++.........      
T Consensus        94 ~~~~~~~~~s~~~l~~is~dRy~aI~~P~~-----~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~------  162 (464)
T 4dkl_A           94 SIDYYNMFTSIFTLCTMSVDRYIAVCHPVK-----ALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQG------  162 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSBCCEEETT------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----ccccccccHhHHhHHHHHHHHHHHHHHHHHheeecccCC------
Confidence            999999999999999999999999999999     778889999999999999999999999887554433221      


Q ss_pred             eeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---------------------
Q psy9472         461 LFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGEL---------------------  519 (647)
Q Consensus       461 ~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~---------------------  519 (647)
                       ...|........ ..+...+.++.+++.+++|+++++++|..|+++++++.+......                     
T Consensus       163 -~~~c~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (464)
T 4dkl_A          163 -SIDCTLTFSHPT-WYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRNIFEMLRIDEGLRLKIYKNTEGYYTIGI  240 (464)
T ss_dssp             -EEECCBCCSSSH-HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCCCSHHHHHHHHHCCEEEEEECTTSCEEEET
T ss_pred             -CceEEeecCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccccccccCCCCCccccc
Confidence             245655433321 122445667777888999999999999999999987655110000                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy9472         520 --------------------------------------------------------------------------------  519 (647)
Q Consensus       520 --------------------------------------------------------------------------------  519 (647)
                                                                                                      
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (464)
T 4dkl_A          241 GHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGET  320 (464)
T ss_dssp             TEEEESSSCSHHHHHHHHHHHSSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHTSCHHHHHHHHHHHHHHCHH
T ss_pred             cccccCCCccccccccccccccccccceecCCccccccccCCcccccccccCCCCCccccCcccccchhhhhccccCCCC
Confidence                                                                                            


Q ss_pred             ------------------------------------------------cchhhhhHhhhhhhHHHHHHHHHHhhccccHH
Q psy9472         520 ------------------------------------------------QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQH  551 (647)
Q Consensus       520 ------------------------------------------------~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~  551 (647)
                                                                      ....+..++++|++|++++++++|++||+|+.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~~v~~~F~icw~P~~  400 (464)
T 4dkl_A          321 GVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYEKDRNLRRITRMVLVVVAVFIVCWTPIH  400 (464)
T ss_dssp             HHHTCHHHHHHHHTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccccccchhhcccchhhcccccccccccCccccceeeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence                                                            00111235678999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCch-hHHHHHHHHhhhhhccC-chhHHhhcCCccccccccccCC
Q psy9472         552 FFFLWFYINPTAPDDYN-DFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSV  607 (647)
Q Consensus       552 i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~  607 (647)
                      ++.++..+......... ..+.+..++.+  +|++ ||+||.++++.+|...++.+++
T Consensus       401 i~~l~~~~~~~~~~~~~~~~~~~~~~L~~--~ns~~NPiIY~~~~~~fR~~~~~lc~~  456 (464)
T 4dkl_A          401 IYVIIKALITIPETTFQTVSWHFCIALGY--TNSCLNPVLYAFLDENFKRCFREFCIP  456 (464)
T ss_dssp             HHHHHHHHSCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhcCCccccchhHHHHHHHHHH--hhhchhHHHHHHhhHHHHHHHHHHhcc
Confidence            99999887653322222 22233334444  9999 9999999999998888886543

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=100.00  E-value=1.9e-36  Score=300.10  Aligned_cols=279  Identities=21%  Similarity=0.410  Sum_probs=218.3

Q ss_pred             hhhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecccccccccccc
Q psy9472         299 ERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKI  378 (647)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~  378 (647)
                      ++...++..+++.+++++|++||+++++++.++|++|+++|+|+.|||++|++.++. .|...... ..+|..|+..|+.
T Consensus         7 ~~~~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~-~p~~~~~~-~~~~~~~~~~c~~   84 (296)
T 2lnl_A            7 ETLNKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALT-LPIWAASK-VNGWIFGTFLCKV   84 (296)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHH-HHHHHHHH-HSSSCCSSHHHHH
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHh-hhHHHhhc-cCCCccchhHHHH
Confidence            345567888999999999999999999999999999999999999999999999764 56554433 3579999999999


Q ss_pred             chhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCC
Q psy9472         379 SESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNN  458 (647)
Q Consensus       379 ~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  458 (647)
                      ..++...+..+|++++++||+|||++|++|++     |+...+ ++...+++++|+.++++++|+..+.........   
T Consensus        85 ~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~-----~~~~~~-~~~~~~~~~~W~~s~~~~~p~~~~~~~~~~~~~---  155 (296)
T 2lnl_A           85 VSLLKEVNFYSGILLLACISVDRYLAIVHATR-----TLTQKR-HLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNS---  155 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSS-----SSCCHH-HHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCTT---
T ss_pred             HhhhhhhhHHHHHHHHHHHHhhhhhhhhhccc-----cchhhh-hhhHheehHHHHHHHHHhcchhhcceeecCCCC---
Confidence            99999999999999999999999999999999     655444 566778889999999999998876654432222   


Q ss_pred             CceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHH
Q psy9472         459 NTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLT  538 (647)
Q Consensus       459 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~  538 (647)
                         ...|...... ........+......+.+++|+.++..+|.++.++++++             ..++++|++|++..
T Consensus       156 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~-------------~~~~~~k~~~~~~~  218 (296)
T 2lnl_A          156 ---SPVCYEVLGN-DTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKA-------------HMGQKHRAMRVIFA  218 (296)
T ss_dssp             ---SCCCCSCCSC-CTTTTTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTSSSC-------------CCHHHHTHHHHHHH
T ss_pred             ---Cceeeeeccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hhhhhhhHHHHHHH
Confidence               1122221111 123344566677778889999999999999887766532             22456789999999


Q ss_pred             HHHHHhhccccHHHHHHHHHhCCCCCCCch--------hHHHHHHHHhhhhhccC-chhHHhhcCCccccccccccCC
Q psy9472         539 FVVVFAMCFFPQHFFFLWFYINPTAPDDYN--------DFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSV  607 (647)
Q Consensus       539 i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~  607 (647)
                      ++++|++||+|+.+..++..+.........        ........+++  +||+ ||+||.++++.+|+..++..++
T Consensus       219 v~~~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~ns~~NPiIY~~~~~~fR~~~~~ll~c  294 (296)
T 2lnl_A          219 VVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGF--LHSCLNPIIYAFIGQNFRHGFLKILAM  294 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHHHTTHHHHHHHHHGG--GGGTHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred             hhhheeeeehHHHHHHHHHHHhccccCCcchhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHhcCHHHHHHHHHHhcC
Confidence            999999999999999999888755433221        12233444555  9999 9999999999999888876543

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=100.00  E-value=5e-38  Score=331.13  Aligned_cols=300  Identities=19%  Similarity=0.227  Sum_probs=227.6

Q ss_pred             hhhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecccccccccccc
Q psy9472         299 ERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKI  378 (647)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~  378 (647)
                      ......+..+++.+++++|++||+++++++.+++++++++|+|++|||++|++.+++.+|+.+.  ....|..+...|++
T Consensus        27 ~~~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~--~~~~~~~~~~~C~~  104 (447)
T 4eiy_A           27 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLF  104 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHH--HHTTCEEEHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccccCccHHHH
Confidence            4456678889999999999999999999999999999999999999999999999888887665  23467778899999


Q ss_pred             chhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCC
Q psy9472         379 SESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNN  458 (647)
Q Consensus       379 ~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  458 (647)
                      ..++..++..+|++++++||+|||++|++|++     |+...+++++..+++++|++++++++|+++++........  .
T Consensus       105 ~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~-----~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~~~~~~~~~~~~--~  177 (447)
T 4eiy_A          105 IACFVLVLTQSSIFSLLAIAIDRYIAIRIPLR-----YNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKE--G  177 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----HHHHSCHHHHHHHHHHHHHHHHHHHTGGGGTCSSTTSCCH--H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHeEEecccc-----cchhhhHHHHHHHHhHHHHHHHHHHHhhhheeccccccCc--c
Confidence            99999999999999999999999999999999     7888999999999999999999999998876543221110  0


Q ss_pred             CceeeeeecCCCCC--CCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------------------
Q psy9472         459 NTLFESCYPFPPID--GYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGE------------------  518 (647)
Q Consensus       459 ~~~~~~C~~~~~~~--~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~------------------  518 (647)
                      ......|.......  ........+..+.+++.+++|+++++++|.+|++.++++.++....                  
T Consensus       178 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (447)
T 4eiy_A          178 KNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAA  257 (447)
T ss_dssp             HHHHTTCCTTEEECCHHHHSCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHH
T ss_pred             ccccccccccchhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhccCcCcCCccccch
Confidence            00111232111000  0011123333344556689999999999999999999874422110                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy9472         519 --------------------------------------------------------------------------------  518 (647)
Q Consensus       519 --------------------------------------------------------------------------------  518 (647)
                                                                                                      
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (447)
T 4eiy_A          258 QVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQK  337 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHTHHH
T ss_pred             hhhccchhhhccCCCCCCCCCCCCcCCCCCCcccccccCCCCCCCCccchhhhhcccCCcCcccchhhhhcccccchhhc
Confidence                                                                                            


Q ss_pred             -ccchhhhhHhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCc
Q psy9472         519 -LQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPS  596 (647)
Q Consensus       519 -~~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~  596 (647)
                       .....+..++++|++|++++++++|++||+|+.++.++..+.+...........+..++.+  +|++ ||+||.++++.
T Consensus       338 ~~~~~~~~~~~~~r~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~--~ns~~NPiIY~~~~~~  415 (447)
T 4eiy_A          338 YLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSH--TNSVVNPFIYAYRIRE  415 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHCHH
T ss_pred             cccchhHHHHHHHHHHHHHHHhhhhhheeccHHHHHHHHHHhcCcccccchHHHHHHHHHHH--HHhccchhhhHhccHH
Confidence             0011123467889999999999999999999999999988876544444444455556666  9999 99999988888


Q ss_pred             cccccccccCCCC
Q psy9472         597 TYSSTRKWDSVST  609 (647)
Q Consensus       597 ~~~~~~~~~~~~~  609 (647)
                      +|...++.+++..
T Consensus       416 fR~~~~~~~~~~~  428 (447)
T 4eiy_A          416 FRQTFRKIIRSHV  428 (447)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHH
Confidence            8887777654443

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=323.51  Aligned_cols=287  Identities=17%  Similarity=0.258  Sum_probs=224.9

Q ss_pred             hhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeee-ccccccccccccc
Q psy9472         301 LETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTF-ESWPYGESICKIS  379 (647)
Q Consensus       301 ~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~-~~~~~~~~~C~~~  379 (647)
                      ....+..+++.+++++|++||+++++++.++++++++.|+|++|||++|++.+++.+|+.+..... +.|.++...|++.
T Consensus        36 ~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~  115 (481)
T 3pbl_A           36 RPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVF  115 (481)
T ss_dssp             -----CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhH
Confidence            345677889999999999999999999999999999999999999999999999889987765554 5799999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCC
Q psy9472         380 ESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNN  459 (647)
Q Consensus       380 ~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (647)
                      .++..++..+|++++++||+|||++|++|++|..  .....+++++..+++++|++++++++|+++.+....        
T Consensus       116 ~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~--~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~--------  185 (481)
T 3pbl_A          116 VTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQH--GTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTG--------  185 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH--TTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCS--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccc--ccccccHHHHHHHHHHHHHHHHHHHHHHHheecccC--------
Confidence            9999999999999999999999999999999211  056788899999999999999999999877543211        


Q ss_pred             ceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc------------------
Q psy9472         460 TLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQG------------------  521 (647)
Q Consensus       460 ~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~------------------  521 (647)
                       ....|..         ....+..+..++.+++|+++++++|..|++.++++.++.......                  
T Consensus       186 -~~~~C~~---------~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (481)
T 3pbl_A          186 -DPTVCSI---------SNPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYT  255 (481)
T ss_dssp             -STTCCSC---------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCSSCEECSSSCEE
T ss_pred             -CCCcccc---------cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhccccccCccccee
Confidence             1124532         123466777888999999999999999999999876542100000                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy9472         522 --------------------------------------------------------------------------------  521 (647)
Q Consensus       522 --------------------------------------------------------------------------------  521 (647)
                                                                                                      
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (481)
T 3pbl_A          256 IGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQM  335 (481)
T ss_dssp             ETTTEEEESSSCHHHHHHHHHHHHTSCCTTCCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             ecccccccCCcccccCCCcccchhccCCCceeccCCchhcccCCcccccccccccCccCccccccccccchhcccccccc
Confidence                                                                                            


Q ss_pred             -----------------------------------------------------hhhhhHhhhhhhHHHHHHHHHHhhccc
Q psy9472         522 -----------------------------------------------------QTRQIRARKKVAKTVLTFVVVFAMCFF  548 (647)
Q Consensus       522 -----------------------------------------------------~~~~~~~~~k~~~~~~~i~~~f~~~w~  548 (647)
                                                                           .....++++|+++++++++++|++||+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~iv~~F~icw~  415 (481)
T 3pbl_A          336 GETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWL  415 (481)
T ss_dssp             HHHHHTTCHHHHHHHHTTCHHHHHHHHHTSHHHHHSHHHHHHHHHHHHHSSSTTSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcccccchhccccccccchhhhccccccCCcccccccceeecccccccccccchhhhHHHHHHHHHHHHHHHhh
Confidence                                                                 000012589999999999999999999


Q ss_pred             cHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCccccccccccCCCCC
Q psy9472         549 PQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSVSTT  610 (647)
Q Consensus       549 P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~~~~  610 (647)
                      |+.++.++..+...... ......+..++.+  +|++ ||+||.++++.+|...++.++|+++
T Consensus       416 P~~i~~~~~~~~~~~~~-~~~~~~~~~~L~~--~ns~~NPiIY~~~~~~fR~~~~~ll~c~~~  475 (481)
T 3pbl_A          416 PFFLTHVLNTHCQTCHV-SPELYSATTWLGY--VNSALNPVIYTTFNIEFRKAFLKILSCGRP  475 (481)
T ss_dssp             HHHHHHHHHHSCSSCCC-CHHHHHHHHHHHH--HHHHHHHHHHHHHCHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHhccccccC-cHHHHHHHHHHHH--HhhccchHHHHHcCHHHHHHHHHHHhccCc
Confidence            99999999887654322 3334445555665  9999 9999999999999888887765443

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=320.15  Aligned_cols=290  Identities=18%  Similarity=0.269  Sum_probs=227.5

Q ss_pred             hhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchh
Q psy9472         302 ETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISES  381 (647)
Q Consensus       302 ~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  381 (647)
                      ...++.+++.+++++|++||+++++++.++++++++.|+|++|||++|++.+++.+|+.+.....+.|.++...|++..+
T Consensus         7 ~~~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~   86 (452)
T 3rze_A            7 QLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLS   86 (452)
T ss_dssp             --CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHHHH
Confidence            34567889999999999999999999999999999999999999999999999999998887777899999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCce
Q psy9472         382 TKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTL  461 (647)
Q Consensus       382 ~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (647)
                      +..++..+|++++++||+|||++|++|++     |+...+++++..+++++|++++++++|.+..........    ...
T Consensus        87 ~~~~~~~~s~~~l~~is~dRy~aI~~P~~-----~~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~----~~~  157 (452)
T 3rze_A           87 MDYVASTASIFSVFILCIDRYRSVQQPLR-----YLKYRTKTRASATILGAWFLSFLWVIPILGWNHFMQQTS----VRR  157 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSCC-----TTTTSSHHHHHHHHHHHHHHHGGGHHHHHCCCC-----------CC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHheeCccc-----cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccc----cCC
Confidence            99999999999999999999999999999     888999999999999999999999988654332221110    112


Q ss_pred             eeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc----------------------
Q psy9472         462 FESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGEL----------------------  519 (647)
Q Consensus       462 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~----------------------  519 (647)
                      ...|....      .....+.++..++.+++|+++++++|..|++.++++.+......                      
T Consensus       158 ~~~C~~~~------~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (452)
T 3rze_A          158 EDKCETDF------YDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIG  231 (452)
T ss_dssp             SSSSCCSC------TTCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHCEEEEEEECTTSCEEEEET
T ss_pred             CCeecCCC------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhhhhcccCCcccccccc
Confidence            23454322      12344667778888999999999999999999987643210000                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy9472         520 --------------------------------------------------------------------------------  519 (647)
Q Consensus       520 --------------------------------------------------------------------------------  519 (647)
                                                                                                      
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (452)
T 3rze_A          232 HLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETG  311 (452)
T ss_dssp             EECSSCSSHHHHHHHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHSCHHHHHHHHHHHHHHCHHH
T ss_pred             cccccCCCCCcccccccCCCCCCCCccccCCcccchhcCCCcccccCcccccccCCcccCCCccccccccccccccCCCC
Confidence                                                                                            


Q ss_pred             -----------------------------------------------cchhhhhHhhhhhhHHHHHHHHHHhhccccHHH
Q psy9472         520 -----------------------------------------------QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHF  552 (647)
Q Consensus       520 -----------------------------------------------~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~i  552 (647)
                                                                     .......++++|+++++++++++|++||+|+.+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~f~icwlP~~i  391 (452)
T 3rze_A          312 VAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFI  391 (452)
T ss_dssp             HTSCHHHHHHHHTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccCcchhhhcCCccccccccCCccCCCCCcccchhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence                                                           000012237889999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCccccccccccCCCCC
Q psy9472         553 FFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSVSTT  610 (647)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~~~~  610 (647)
                      +.++..+........  ...+..++.+  +|++ ||+||.++++.+|...++.++++..
T Consensus       392 ~~l~~~~~~~~~~~~--~~~~~~~L~~--~ns~~NPiIY~~~~~~fR~~~~~ll~~~~~  446 (452)
T 3rze_A          392 FFMVIAFCKNCCNEH--LHMFTIWLGY--INSTLNPLIYPLCNENFKKTFKRILHIRSG  446 (452)
T ss_dssp             HHHHHHHHSCCSCTT--THHHHHHHHH--HHHHHHHHHHHHHCHHHHHHHHHHHTC---
T ss_pred             HHHHHHHhcccccHH--HHHHHHHHHH--HHhcccchhhhhccHHHHHHHHHHHHhccc
Confidence            999988865543322  2334555555  9999 9999999999988888887655443

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=100.00  E-value=2.6e-36  Score=302.31  Aligned_cols=292  Identities=20%  Similarity=0.302  Sum_probs=228.5

Q ss_pred             hhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccc
Q psy9472         300 RLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKIS  379 (647)
Q Consensus       300 ~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~  379 (647)
                      +.......+++.+++++|++||+++++++.+++++|+++|++++|||++|++.++..+|..+.....+.|..|+..|++.
T Consensus         8 ~~~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~   87 (315)
T 4amj_A            8 QQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELW   87 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHHHH
Confidence            34456788899999999999999999999999999999999999999999999888889887777778899999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCC
Q psy9472         380 ESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNN  459 (647)
Q Consensus       380 ~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (647)
                      .++..++..+|++++++||+|||++|++|++     |+...+++++..+++++|++++++++|+.+.......      .
T Consensus        88 ~~~~~~~~~~S~~~l~~isidRy~aI~~P~~-----~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~------~  156 (315)
T 4amj_A           88 TSLDVLCVTASIETLCVIAIDRYLAITSPFR-----YQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDE------D  156 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCC------S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccc-----cccccchhhHHHhhhHHHHHHHHHHHHHHHHHhcccc------C
Confidence            9999999999999999999999999999999     7788899999999999999999999887765432211      1


Q ss_pred             ceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc--chhhhhHhhhhhhHHHH
Q psy9472         460 TLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQ--GQTRQIRARKKVAKTVL  537 (647)
Q Consensus       460 ~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~k~~~~~~  537 (647)
                      .....|........ ......+.....++.+++|+++++++|.+|++.++++.++..+..+  .+++..++++|+++++.
T Consensus       157 ~~~~~c~~~~~~~~-~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~  235 (315)
T 4amj_A          157 PQALKCYQDPGCCD-FVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLG  235 (315)
T ss_dssp             HHHHHHHHCTTCCC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHHH
T ss_pred             CCccccccccccch-hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhhhhhhhHHHHHH
Confidence            12234544332221 2344566667777788999999999999999999987765543322  22333457889999999


Q ss_pred             HHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCccccccccccCCC
Q psy9472         538 TFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSVS  608 (647)
Q Consensus       538 ~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~~  608 (647)
                      +++++|++||+|+.+..++..+......  .........+.+  +|++ ||+||. +++.+|...++.++++
T Consensus       236 ~~~~~f~i~~~P~~i~~~~~~~~~~~~~--~~~~~~~~~l~~--~ns~~nPiiY~-~~~~fR~~~~~~l~~~  302 (315)
T 4amj_A          236 IIMGVFTLCWLPFFLVNIVNVFNRDLVP--DWLFVAFNWLGY--ANSAMNPIIYC-RSPDFRKAFKRLLAFP  302 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTSSC--HHHHHHHHHHHH--HGGGTHHHHGG-GSHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccch--HHHHHHHHHHHH--HhccccHHHHc-CcHHHHHHHHHHhCCC
Confidence            9999999999999999999888654322  223334444555  9999 999998 7888888887776543

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=100.00  E-value=5.6e-35  Score=307.50  Aligned_cols=289  Identities=20%  Similarity=0.296  Sum_probs=225.3

Q ss_pred             hhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhh-cccceeeeeeeccccccccccccc
Q psy9472         301 LETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILT-CVPFTSTVYTFESWPYGESICKIS  379 (647)
Q Consensus       301 ~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~-~~~~~~~~~~~~~~~~~~~~C~~~  379 (647)
                      ....++.+++.+++++|++||+++++++.+++++|++.|++++|||++|++.+++ .+|+.+.....+.|.++...|++.
T Consensus        32 ~~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C~~~  111 (448)
T 2z73_A           32 AVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVY  111 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHHHHH
Confidence            3456778899999999999999999999999999999999999999999999876 378776666667899999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCC
Q psy9472         380 ESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNN  459 (647)
Q Consensus       380 ~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (647)
                      .++..++..+|++++++||+|||++|++|++     |+...+++++..+++++|+++++++++.++.+.......     
T Consensus       112 ~~~~~~~~~~S~~~l~~isidRy~aI~~P~~-----~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~-----  181 (448)
T 2z73_A          112 GFIGGIFGFMSIMTMAMISIDRYNVIGRPMA-----ASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEG-----  181 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT-----TCCCCCHHHHHHHHHHHHHHHHHHHSGGGGTSSCEEECT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----ccceechhHHHHHHHHHHHHHHHHHHHHHhceeeeeecC-----
Confidence            9999999999999999999999999999999     788899999999999999999999998887665443321     


Q ss_pred             ceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------cccchhhhhHhhhh
Q psy9472         460 TLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG--------ELQGQTRQIRARKK  531 (647)
Q Consensus       460 ~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~--------~~~~~~~~~~~~~k  531 (647)
                       ....|.......  ......+.....++.+++|+++++++|..|+++++++.++...        ......+..++++|
T Consensus       182 -~~~~c~~~~~~~--~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  258 (448)
T 2z73_A          182 -VLCNCSFDYISR--DSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMR  258 (448)
T ss_dssp             -TSSSEEECCSCC--SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTCCTTHHHHHHHHHHHHH
T ss_pred             -CceeEecccccC--CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhccccHHHH
Confidence             123565433221  1223455566667779999999999999999999876543211        11111223356889


Q ss_pred             hhHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCcccccccccc
Q psy9472         532 VAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWD  605 (647)
Q Consensus       532 ~~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~  605 (647)
                      ++|++++++++|++||+|+.++.++..+....... .....+..++..  +|++ ||+||.++++.+|+..++.+
T Consensus       259 ~~~~l~~iv~~F~i~~~P~~i~~~~~~~~~~~~~~-~~~~~~~~~l~~--~ns~~NPiIY~~~~~~fR~~~~~~~  330 (448)
T 2z73_A          259 LAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVT-PYAAQLPVMFAK--ASAIHNPMIYSVSHPKFREAISQTF  330 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCC-HHHHHHHHHHHH--HGGGSHHHHHHHHCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCcccCC-hHHHHHHHHHHH--HHHhhcchHHHHhhHHHHHHHHHHH
Confidence            99999999999999999999999988876432211 222233334444  9999 99998887777766665543

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=100.00  E-value=1.9e-35  Score=316.26  Aligned_cols=290  Identities=21%  Similarity=0.323  Sum_probs=223.6

Q ss_pred             hhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchh
Q psy9472         302 ETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISES  381 (647)
Q Consensus       302 ~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  381 (647)
                      ...+..+++.+++++|++||+++++++.+++++|++.|+|++|||++|++.+++.+|+.+.....+.|.++...|++..+
T Consensus       181 ~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~  260 (514)
T 3sn6_R          181 WVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTS  260 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhhhHHH
Confidence            44577889999999999999999999999999999999999999999999998889988877777889999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCce
Q psy9472         382 TKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTL  461 (647)
Q Consensus       382 ~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (647)
                      +..++..+|++++++||+|||++|++|++     |+...+++++..+++++|+++++++++++.........      ..
T Consensus       261 l~~~~~~~S~~~l~~isidRy~aI~~Pl~-----~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~~~~~~~~~~------~~  329 (514)
T 3sn6_R          261 IDVLCVTASIETLCVIAVDRYFAITSPFK-----YQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATH------QE  329 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSHHH-----HHHHCCHHHHHHHHHHHHHHHHHTTHHHHHTTTTC---------CH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCccc-----cchhccchHHHHHHHHHHHHHHHHHhhhhhccceeccc------Cc
Confidence            99999999999999999999999999999     77889999999999999999999987665443221111      11


Q ss_pred             eeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---------------------cc
Q psy9472         462 FESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGE---------------------LQ  520 (647)
Q Consensus       462 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~---------------------~~  520 (647)
                      ...|........ ......|.++..++.+++|+++++++|.+|++.++++.++....                     ..
T Consensus       330 ~~~c~~~~~~~~-~~~~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (514)
T 3sn6_R          330 AINCYAEETCCD-FFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLR  408 (514)
T ss_dssp             HHHHHHSSSCCC-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------------
T ss_pred             ccceeecccccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence            123332221111 22345677788889999999999999999999998764321110                     01


Q ss_pred             chhhhhHhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCcccc
Q psy9472         521 GQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYS  599 (647)
Q Consensus       521 ~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~  599 (647)
                      ...+..++++|+++++++++++|++||+|+.++.++..+.....  ......+..++.+  +|++ ||+||. +++.+|.
T Consensus       409 ~~~~~~~~~~r~~~~l~~iv~~F~lcwlP~~i~~~~~~~~~~~~--~~~~~~~~~~l~~--~ns~~NPiIY~-~~~~fR~  483 (514)
T 3sn6_R          409 RSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLI--RKEVYILLNWIGY--VNSGFNPLIYC-RSPDFRI  483 (514)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSS--CHHHHHHHHHHHH--HHHHHHHHHHT-TCHHHHH
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc--chHHHHHHHHHHH--HHHhhhHHhhc-CCHHHHH
Confidence            11223357789999999999999999999999999888754322  2223344445555  9999 999998 6777777


Q ss_pred             ccccccCCC
Q psy9472         600 STRKWDSVS  608 (647)
Q Consensus       600 ~~~~~~~~~  608 (647)
                      ..++.++++
T Consensus       484 ~~~~~l~~~  492 (514)
T 3sn6_R          484 AFQELLCLR  492 (514)
T ss_dssp             HHHTTCC--
T ss_pred             HHHHHhCcC
Confidence            776665443

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.95  E-value=3.1e-29  Score=267.24  Aligned_cols=207  Identities=23%  Similarity=0.364  Sum_probs=148.9

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||+||++|++     |+.+++++++..+++++|++++++++|+++.........+. .......|...++..    
T Consensus       131 is~dRy~ai~~P~~-----~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~-~~~~~~~c~~~~~~~----  200 (510)
T 4grv_A          131 LSVARYLAICHPFK-----AKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADG-THPGGLVCTPIVDTA----  200 (510)
T ss_dssp             HHHHHHHHHHSCCC-----CCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSS-CCGGGEEEEECSCHH----
T ss_pred             HHHHheEEEecccc-----ccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCC-CCCCccccccccccc----
Confidence            58999999999999     77789999999999999999999999999876655443332 222233466544321    


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCC---------------------------------------
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG---------------------------------------  121 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~---------------------------------------  121 (647)
                      ....|..+.+++.|++|+++|+++|.+|++.++++.+....                                       
T Consensus       201 ~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (510)
T 4grv_A          201 TVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSE  280 (510)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHHHHHHHHTCCEEEEEECTTSCEEEETTEECCCSSSHHHHHHS
T ss_pred             hhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccccccccccCCCCCCCccccc
Confidence            23566777788889999999999999999999764321000                                       


Q ss_pred             --------------------------------------------------------------------------------
Q psy9472         122 --------------------------------------------------------------------------------  121 (647)
Q Consensus       122 --------------------------------------------------------------------------------  121 (647)
                                                                                                      
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (510)
T 4grv_A          281 LDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLNNKR  360 (510)
T ss_dssp             CCC---CCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTC
T ss_pred             cCcCCCCCCCCcccCCccccccCCCCcccccccccCCCCCCCcCccccccccccCCccccCCCCCCCCCCccccccccCC
Confidence                                                                                            


Q ss_pred             ---------------Ccc-----------------hhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCC
Q psy9472         122 ---------------ELQ-----------------GQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPD  169 (647)
Q Consensus       122 ---------------~~~-----------------~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~  169 (647)
                                     +.+                 ...+..++|+|++||+++|+++|++||+||++..++..+......
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~  440 (510)
T 4grv_A          361 WDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSGSVQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQW  440 (510)
T ss_dssp             HHHHHHHHHSSCSCCSSHHHHHHHHHHHHHSSSGGGTTSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCC
T ss_pred             CcccccccccccccccCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence                           000                 000012357899999999999999999999999998877654322


Q ss_pred             C--hhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccccc
Q psy9472         170 D--YNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMS  217 (647)
Q Consensus       170 ~--~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~  217 (647)
                      .  ......++..++.+|+++||++||+||+++|++||++++++++|+..
T Consensus       441 ~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aFk~iL~C~C~  490 (510)
T 4grv_A          441 TTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVFLSTLACLCP  490 (510)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC----------
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC
Confidence            2  23344567788999999999999999999999999999999987543

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.94  E-value=1.4e-27  Score=253.98  Aligned_cols=210  Identities=20%  Similarity=0.303  Sum_probs=143.3

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||+||++|++     |..+++++++..+++++|++++++++|+++...........     ...|...+.......
T Consensus       114 is~dRy~aI~~P~~-----~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~-----~~~C~~~~~~~~~~~  183 (484)
T 3vw7_A          114 ISIDRFLAVVYPMQ-----SLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQVPGLG-----ITTCHDVLSETLLEG  183 (484)
T ss_dssp             HHHHHHHHHHCCC----------CCHHHHHHHHHHHHHHHHHHHHHHHTSCCEEEETTTT-----EEEESSSCSSCSSCH
T ss_pred             HHHHHheEEEcccc-----cccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC-----CceeeccCCccchhH
Confidence            58999999999999     77789999999999999999999999998776554333221     124877666544333


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCC-------------------------------C-------
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG-------------------------------E-------  122 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~-------------------------------~-------  122 (647)
                      +...|.+...++.+++|+++|+++|.+|++.++++.++...                               .       
T Consensus       184 ~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~  263 (484)
T 3vw7_A          184 YYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSANIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKSPSLNAAKSE  263 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHCCEEEEEECTTSCEEEETTEEEESSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhHHHHhhhhccchhhhhccccccceeeeccccccCCcchhccccc
Confidence            33446677778889999999999999999999887641100                               0       


Q ss_pred             --------------------------------------------------------------------------------
Q psy9472         123 --------------------------------------------------------------------------------  122 (647)
Q Consensus       123 --------------------------------------------------------------------------------  122 (647)
                                                                                                      
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  343 (484)
T 3vw7_A          264 LDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKR  343 (484)
T ss_dssp             HHHHHTSCCSSBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTC
T ss_pred             ccccccccCCCCCCcccccccccccccccccccccccccCcccccccccccchhhccccccCccccccchhhhhhhhccc
Confidence                                                                                            


Q ss_pred             -----------c--------------------chhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCh
Q psy9472         123 -----------L--------------------QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDY  171 (647)
Q Consensus       123 -----------~--------------------~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~  171 (647)
                                 .                    .......++++|++||+++++++|++||+||+++.++..+...... .
T Consensus       344 ~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~r~~k~l~~v~~~F~icwlP~~i~~l~~~~~~~~~~-~  422 (484)
T 3vw7_A          344 WDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYANRSKKSRALFLSAAVFCIFIICFGPTNVLLIAHYSFLSHTS-T  422 (484)
T ss_dssp             HHHHHHHHTTSHHHHHSHHHHHHHHHHHHHCSSHHHHCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTCTTCT-T
T ss_pred             hhhhhhhhhhhhhhccCcccccCccceeecchhccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc-c
Confidence                       0                    0000133567899999999999999999999999998876543222 2


Q ss_pred             hhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccccccccc
Q psy9472         172 NDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKII  221 (647)
Q Consensus       172 ~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~~~  221 (647)
                      ......+..++.+++++||++||+||++++++||++++++++|++.++..
T Consensus       423 ~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~~~ll~~~~~~~~~  472 (484)
T 3vw7_A          423 TEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYVYSILCCKESSDPS  472 (484)
T ss_dssp             SHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC-----------------
T ss_pred             hhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHHHHHHhhccCCCcc
Confidence            23345677789999999999999999999999999999999887665433

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.94  E-value=7.7e-26  Score=231.01  Aligned_cols=201  Identities=27%  Similarity=0.449  Sum_probs=154.4

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||+||++|++     |+  .+++++..+++++|++++++++|.++..........       ..|..+++......
T Consensus       126 isidRy~aI~~P~~-----~~--~~~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~-------~~C~~~~~~~~~~~  191 (364)
T 2ks9_A          126 VAFDRYMAIIHPLQ-----PR--LSATATKVVICVIWVLALLLAFPQGYYSTTETMPSR-------VVCMIEWPEHPNKI  191 (364)
T ss_dssp             HHHHHHHHHHCCCT-----TS--CCHHHHHHHHHHHHHHHHHHHTTTTTTSCCCBCTTC-------SSBCCCCSCCCTTT
T ss_pred             HHHHHHHHHhhhcc-----cc--cccchHHHHHHHHHHHHHHHHhHHHHHhhheecCCC-------CEEeecCCCcchhH
Confidence            58999999999998     43  688889999999999999999988765433222111       12877665544444


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW  160 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~  160 (647)
                      +...|.+...++.+++|+++++++|.+|.+.++++.+...... ...++.++++|++|++++++++|++||+|+.+..++
T Consensus       192 ~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~~~~~~~~~-~~~~~~~~~~k~~~~~~~v~~~f~~~~~P~~i~~~~  270 (364)
T 2ks9_A          192 YEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSD-RYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLL  270 (364)
T ss_dssp             THHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSCCCSSSSSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcch-hhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777778888999999999999999999986554433222 233455678999999999999999999999999998


Q ss_pred             HHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccccc
Q psy9472         161 FYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSS  218 (647)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~  218 (647)
                      ..+.......  .....+..+..+++++|+++||+||++++++||+++++.++|++++
T Consensus       271 ~~~~~~~~~~--~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~~  326 (364)
T 2ks9_A          271 PYINPDLYLK--KFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFI  326 (364)
T ss_dssp             HHHSTTSCSS--SCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSSSCCC
T ss_pred             HHhCcccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCC
Confidence            8776543211  1123455677889999999999999999999999999999876544

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.93  E-value=1.2e-25  Score=228.04  Aligned_cols=198  Identities=17%  Similarity=0.302  Sum_probs=153.5

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||+||++|++     |+. .+++++..+++++|++++++++|+++...........      ..|..++.......
T Consensus       132 isidRy~aI~~P~~-----~~~-~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~------~~C~~~~~~~~~~~  199 (349)
T 1u19_A          132 LAIERYVVVCKPMS-----NFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQ------CSCGIDYYTPHEET  199 (349)
T ss_dssp             HHHHHHHHHTCCSS-----SCC-CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETTT------TEEECCCSCCCGGG
T ss_pred             HHHHHHheeeCCcc-----cee-eccchhHHHHHHHHHHHHHHHHHHHHheeeeeccCCc------eeecccccCccccc
Confidence            58999999999999     555 7889999999999999999999988754332222111      23776654433333


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW  160 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~  160 (647)
                      ....|.....++.+++|+++++++|.+|.+.++++.++.++    +.+..++++|+++++++++++|++||+|+.+..++
T Consensus       200 ~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~  275 (349)
T 1u19_A          200 NNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQE----SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFY  275 (349)
T ss_dssp             THHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSCS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            44667777788889999999999999999999876654332    23445677899999999999999999999999888


Q ss_pred             HHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccccccc
Q psy9472         161 FYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSK  219 (647)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~  219 (647)
                      ..........     ..+..++.+++++|+++||++|++++++||+++++.++|++++.
T Consensus       276 ~~~~~~~~~~-----~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~c~~~~~  329 (349)
T 1u19_A          276 IFTHQGSDFG-----PIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPL  329 (349)
T ss_dssp             HHHTTTSCCC-----HHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSCCCT
T ss_pred             heecCCcccc-----hHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHhcccCCCC
Confidence            7765433222     23556788899999999999999999999999999998765543

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.93  E-value=2.4e-26  Score=244.64  Aligned_cols=199  Identities=23%  Similarity=0.324  Sum_probs=144.2

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||+||++|++     |..+++++++..+++++|++++++++++++..+.....      .....|...+.... ..
T Consensus       134 isidRy~aI~~Pl~-----~~~~~t~~~~~~~i~~~W~~s~~~~~~p~~~~~~~~~~------~~~~~c~~~~~~~~-~~  201 (500)
T 2rh1_A          134 IAVDRYFAITSPFK-----YQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATH------QEAINCYAEETCCD-FF  201 (500)
T ss_dssp             HHHHHHHHHHSSST-----TSCSSCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCS------HHHHHHHHCTTCCC-CC
T ss_pred             HHHHHHHHeeccCc-----CCeeecccceeehhhHHHHHHHHHHhcchheeeecccc------cCcceecccccccc-cc
Confidence            58999999999999     77789999999999999999999986544332211110      01112544332211 22


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCC---------------C--CCCc--------------------
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKN---------------M--PGEL--------------------  123 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~---------------~--~~~~--------------------  123 (647)
                      ....|.+...++.|++|+++|+++|.+|++.++++.++               .  ..+.                    
T Consensus       202 ~~~~y~~~~~~~~~~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (500)
T 2rh1_A          202 TNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSE  281 (500)
T ss_dssp             CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHTCCEEEEEECTTSCEEEETTEEEESCSCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCCCCCCCcccccccccc
Confidence            34667777888889999999999999999999876554               0  0000                    


Q ss_pred             -----------------------ch----------------------------------------------hHH------
Q psy9472         124 -----------------------QG----------------------------------------------QTR------  128 (647)
Q Consensus       124 -----------------------~~----------------------------------------------~~~------  128 (647)
                                             +.                                              ..+      
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (500)
T 2rh1_A          282 LDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKR  361 (500)
T ss_dssp             HHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred             cccccCCCCCCccchhhhhhcccCCccccccccccCCCCCCCCCcccccccchhhcccCCCCccccccccCchhhhhccc
Confidence                                   00                                              000      


Q ss_pred             -------------------------------------HHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCh
Q psy9472         129 -------------------------------------QIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDY  171 (647)
Q Consensus       129 -------------------------------------~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~  171 (647)
                                                           ..++|+|++|++++++++|++||+||++..++..+.....   
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ka~ktl~ivv~~F~icWlP~~i~~l~~~~~~~~~---  438 (500)
T 2rh1_A          362 WDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLI---  438 (500)
T ss_dssp             HHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSGGGTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSS---
T ss_pred             ccccccccccccccCCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---
Confidence                                                 0026789999999999999999999999999988863221   


Q ss_pred             hhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccccc
Q psy9472         172 NDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSS  218 (647)
Q Consensus       172 ~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~  218 (647)
                         ...+..+..+|+++||++||+||++ +++||++++++++|++++
T Consensus       439 ---~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~af~~il~~~~~~  481 (500)
T 2rh1_A          439 ---RKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCLRRSS  481 (500)
T ss_dssp             ---CHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHHHHHHTTC----
T ss_pred             ---cHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHHHHHHHhhhccC
Confidence               1456678899999999999999985 999999999999876544

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.92  E-value=7.9e-26  Score=240.71  Aligned_cols=209  Identities=18%  Similarity=0.233  Sum_probs=152.3

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCC--CC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPID--GY   78 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~--~~   78 (647)
                      ||+|||+||++|++     |..+++++++..+++++|++++++++|+++.+..........  .....|...+...  ..
T Consensus       113 is~dRy~aI~~P~~-----~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~c~~~~~~~~~~~  185 (488)
T 3eml_A          113 IAIDRYIAIRIPLR-----YNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGK--NHSQGCGEGQVACLFED  185 (488)
T ss_dssp             HHHHHHHHHSCGGG-----STTTSCHHHHHHHHHHHHHHHHHHHTTGGGTCCSSCC---------CCSSCTTCEECCHHH
T ss_pred             HHHHhheeEecccc-----cccccCHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc--ccccccccccceeeccc
Confidence            58999999999999     777899999999999999999999998887554322211111  0111243322111  11


Q ss_pred             CCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc-----------------------------------
Q psy9472          79 PNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGEL-----------------------------------  123 (647)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~-----------------------------------  123 (647)
                      ......+.+..+++.+++|+++|+++|.+|++.++++.++.....                                   
T Consensus       186 ~~~~~~~~~~~~~~~~~~P~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (488)
T 3eml_A          186 VVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAK  265 (488)
T ss_dssp             HSCHHHHHTTTHHHHTHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTCCEEEEEECTTSCEEEETTEEEESSSCHHHHH
T ss_pred             cccchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhccccccchhhccccccceeccccccCCCCccccccc
Confidence            112244556667888999999999999999999987654321000                                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy9472         124 --------------------------------------------------------------------------------  123 (647)
Q Consensus       124 --------------------------------------------------------------------------------  123 (647)
                                                                                                      
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (488)
T 3eml_A          266 SELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQ  345 (488)
T ss_dssp             HHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHSCHHHHHHHHHHHHHHCHHHHTTCHHHHHHHHT
T ss_pred             cccccCCCCCCCCCCChhhhccCcccCccccccccCCCCCCCCCcCCcchHHHhhhhccccCCCCCCccCCCCcchhhhh
Confidence                                                                                            


Q ss_pred             -----------------------------------chhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCC
Q psy9472         124 -----------------------------------QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAP  168 (647)
Q Consensus       124 -----------------------------------~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~  168 (647)
                                                         ....+..++|+|+++++++++++|++||+||+++.++..+.....
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~F~icw~P~~i~~~~~~~~~~~~  425 (488)
T 3eml_A          346 KRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCS  425 (488)
T ss_dssp             TCHHHHHHHHTTSHHHHHCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred             ccccccccCcccccCcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCccc
Confidence                                               001122467899999999999999999999999999988865432


Q ss_pred             CChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccccccc
Q psy9472         169 DDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKI  220 (647)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~~  220 (647)
                      .    ....+..++.+++++|+++||+||++++++||++++++++|+.+++.
T Consensus       426 ~----~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~l~~~~~~~~~  473 (488)
T 3eml_A          426 H----APLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQ  473 (488)
T ss_dssp             C----CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTSCC-
T ss_pred             c----ccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHHHHHHhhcccccC
Confidence            2    12456678889999999999999999999999999999987665543

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.92  E-value=1.6e-25  Score=223.79  Aligned_cols=200  Identities=22%  Similarity=0.314  Sum_probs=146.5

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||+||++|++     |+.+.+++++..+++++|+.++++++|+++.........      ....|..+....+ ..
T Consensus       105 isidRy~aI~~P~~-----~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~------~~~~c~~~~~~~~-~~  172 (315)
T 4amj_A          105 IAIDRYLAITSPFR-----YQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDP------QALKCYQDPGCCD-FV  172 (315)
T ss_dssp             HHHHHHHHHHCHHH-----HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSH------HHHHHHHCTTCCC-CC
T ss_pred             HHHHHHhhcccccc-----cccccchhhHHHhhhHHHHHHHHHHHHHHHHHhccccCC------Cccccccccccch-hh
Confidence            58999999999999     656789999999999999999999988776543221111      1122554433222 22


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcc--hhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHH
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQ--GQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFF  158 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~  158 (647)
                      ....|.....++.+++|+++++++|.+|++.++++.++.++..+  .+.+..++|+|+++++++++++|++||+|+.+..
T Consensus       173 ~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~~~P~~i~~  252 (315)
T 4amj_A          173 TNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVN  252 (315)
T ss_dssp             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677778888889999999999999999999887665443322  2333455789999999999999999999999999


Q ss_pred             HHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccccccc
Q psy9472         159 LWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSK  219 (647)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~  219 (647)
                      ++..+......      .....+..+++++||++||++|+ ++++||++++++++|++.++
T Consensus       253 ~~~~~~~~~~~------~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~~~~~~  306 (315)
T 4amj_A          253 IVNVFNRDLVP------DWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPRKAD  306 (315)
T ss_dssp             HHHHHCTTSSC------HHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC------
T ss_pred             HHHHhcCccch------HHHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCCCCcch
Confidence            98887654322      34556778899999999999999 99999999999998865544

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.91  E-value=4.4e-26  Score=239.77  Aligned_cols=209  Identities=19%  Similarity=0.266  Sum_probs=147.8

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCC--CC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPID--GY   78 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~--~~   78 (647)
                      ||+|||+||++|++     |..+++++++..+++++|++++++++|+++.+........  .......|...+...  ..
T Consensus       123 is~dRy~aI~~P~~-----~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~~~~~~~~~~~~--~~~~~~~c~~~~~~~~~~~  195 (447)
T 4eiy_A          123 IAIDRYIAIRIPLR-----YNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKE--GKNHSQGCGEGQVACLFED  195 (447)
T ss_dssp             HHHHHHHHHHCHHH-----HHHHSCHHHHHHHHHHHHHHHHHHHTGGGGTCSSTTSCCH--HHHHHTTCCTTEEECCHHH
T ss_pred             HHHHHHeEEecccc-----cchhhhHHHHHHHHhHHHHHHHHHHHhhhheeccccccCc--cccccccccccchhhcccc
Confidence            58999999999999     6668999999999999999999999988875432111100  000001132211100  01


Q ss_pred             CCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC------------------------------------
Q psy9472          79 PNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGE------------------------------------  122 (647)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~------------------------------------  122 (647)
                      ......+.+..+++.+++|+++++++|.+|++.++++.++..++                                    
T Consensus       196 ~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (447)
T 4eiy_A          196 VVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQK  275 (447)
T ss_dssp             HSCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhccCcCcCCccccchhhhccchhhhccCCCCCC
Confidence            11124455555677889999999999999999998764322110                                    


Q ss_pred             ---------------------------------------------------------------cchhHHHHHHHhHhHHH
Q psy9472         123 ---------------------------------------------------------------LQGQTRQIRARKKVAKT  139 (647)
Q Consensus       123 ---------------------------------------------------------------~~~~~~~~~~~~k~~~~  139 (647)
                                                                                     .+...+..++|+|++|+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~  355 (447)
T 4eiy_A          276 ATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKS  355 (447)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCCCCCCcccccccCCCCCCCCccchhhhhcccCCcCcccchhhhhcccccchhhccccchhHHHHHHHHHHHH
Confidence                                                                           00112234678899999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccccccc
Q psy9472         140 VLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSK  219 (647)
Q Consensus       140 ~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~  219 (647)
                      +++++++|++||+|+.+..++..+......    ....+..++.+++++||++||+||++++++||++++++++|+.+++
T Consensus       356 l~~vv~~F~icw~P~~i~~~~~~~~~~~~~----~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~~~~r~  431 (447)
T 4eiy_A          356 LAIIVGLFALCWLPLHIINCFTFFCPDCSH----APLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ  431 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCTTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTC---
T ss_pred             HHHhhhhhheeccHHHHHHHHHHhcCcccc----cchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999998887653221    1245667889999999999999999999999999999998776554


Q ss_pred             c
Q psy9472         220 I  220 (647)
Q Consensus       220 ~  220 (647)
                      .
T Consensus       432 ~  432 (447)
T 4eiy_A          432 Q  432 (447)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.91  E-value=2.8e-25  Score=235.09  Aligned_cols=198  Identities=22%  Similarity=0.370  Sum_probs=147.2

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||+||++|++     |..+.+++++..+++++|++++++++|+++.+...........    ..|...+.      
T Consensus       117 isidRy~ai~~P~~-----~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~C~~~~~------  181 (467)
T 3uon_A          117 ISFDRYFCVTKPLT-----YPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVED----GECYIQFF------  181 (467)
T ss_dssp             HHHHHHHHHHCTTT-----SGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCS----SCCCCGGG------
T ss_pred             HHHHHHHHhhcccc-----cccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC----CcceeecC------
Confidence            58999999999999     7778999999999999999999999998876543211111111    12654432      


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC--------------------------------------
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGE--------------------------------------  122 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~--------------------------------------  122 (647)
                      ....|.+...++.+++|+++++++|.+|++.++++.+.....                                      
T Consensus       182 ~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (467)
T 3uon_A          182 SNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSE  261 (467)
T ss_dssp             GSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHSCCEEEEEECTTSCEEEETTEECCCCSSHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccccceeeccchhhcccccCcccccCCcccccccc
Confidence            124577777888899999999999999999998875411000                                      


Q ss_pred             ---------c---c------------------------------------------------------------------
Q psy9472         123 ---------L---Q------------------------------------------------------------------  124 (647)
Q Consensus       123 ---------~---~------------------------------------------------------------------  124 (647)
                               .   .                                                                  
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (467)
T 3uon_A          262 LDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKR  341 (467)
T ss_dssp             HHHHHSSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHSCHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHTTC
T ss_pred             cccccccCCCCcccccccccccccccchhhcccccCCCCCccccccccccccccccceeeccccCCCccccccchhhhcC
Confidence                     0   0                                                                  


Q ss_pred             ----------------hhHHH-----------------HHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCh
Q psy9472         125 ----------------GQTRQ-----------------IRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDY  171 (647)
Q Consensus       125 ----------------~~~~~-----------------~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~  171 (647)
                                      ...+.                 .++|+|+++++++++++|++||+||.+..++..+......  
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~--  419 (467)
T 3uon_A          342 WDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIP--  419 (467)
T ss_dssp             HHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSTTSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSC--
T ss_pred             ccccccccccccccCCCCcccccccchhhcccccccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc--
Confidence                            00000                 0257899999999999999999999999999887653221  


Q ss_pred             hhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccccccc
Q psy9472         172 NDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSK  219 (647)
Q Consensus       172 ~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~  219 (647)
                          ..+..++.+++++|+++||+||++++++||++++++++|++++.
T Consensus       420 ----~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c~~~~~  463 (467)
T 3uon_A          420 ----NTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLMCHYKNI  463 (467)
T ss_dssp             ----HHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHHHHCC------
T ss_pred             ----hHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHHHHHhhhccCC
Confidence                45667888999999999999999999999999999998775543

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.91  E-value=1.6e-24  Score=214.28  Aligned_cols=189  Identities=20%  Similarity=0.364  Sum_probs=141.4

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||+||++|++     |+.. .++++..+++++|+.++++++|+..............      .|..... .....
T Consensus       103 isidRy~aI~~P~~-----~~~~-~~~~~~~~~~~~W~~s~~~~~p~~~~~~~~~~~~~~~------~~~~~~~-~~~~~  169 (296)
T 2lnl_A          103 ISVDRYLAIVHATR-----TLTQ-KRHLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSP------VCYEVLG-NDTAK  169 (296)
T ss_dssp             HHHHHHHHSSSCSS-----SSCC-HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCTTSC------CCCSCCS-CCTTT
T ss_pred             HHhhhhhhhhhccc-----cchh-hhhhhHheehHHHHHHHHHhcchhhcceeecCCCCCc------eeeeecc-ccchh
Confidence            58999999999999     5444 4466777888999999999999887654433222111      1222111 22223


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW  160 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~  160 (647)
                      ....+.+....+.+++|+.++.++|.++.+.++++.+             ++|+|++|++..++++|++||+|+++..++
T Consensus       170 ~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~-------------~~~~k~~~~~~~v~~~f~icw~P~~i~~~~  236 (296)
T 2lnl_A          170 WRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHM-------------GQKHRAMRVIFAVVLIFLLCWLPYNLVLLA  236 (296)
T ss_dssp             TTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTSSSCCC-------------HHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hhhhhHHHHHHHhhhheeeeehHHHHHHHH
Confidence            3456777778888999999999999988876653221             356789999999999999999999999998


Q ss_pred             HHhcCCCCCC----hhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccc
Q psy9472         161 FYINPTAPDD----YNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCK  215 (647)
Q Consensus       161 ~~~~~~~~~~----~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~  215 (647)
                      ..+......+    .......+..++.+++++||++||++|++++++||++++|+++|+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~ll~cr  295 (296)
T 2lnl_A          237 DTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMH  295 (296)
T ss_dssp             HHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGGGTHHHHHHHHHCSHHHHHHHHHHHHC
T ss_pred             HHHhccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence            8876543221    112223456678899999999999999999999999999999875

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.91  E-value=1.1e-25  Score=240.40  Aligned_cols=204  Identities=20%  Similarity=0.302  Sum_probs=156.1

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||+||++|++     |....+++++..+++++|++++++++|+++........+.       ..|...++..   .
T Consensus       140 is~dRy~ai~~P~~-----~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~-------~~C~~~~~~~---~  204 (502)
T 3odu_A          140 ISLDRYLAIVHATN-----SQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDR-------YICDRFYPND---L  204 (502)
T ss_dssp             HHHHHHHHHHCTTS-----CHHHHHHHHHTHHHHHTHHHHHHTTHHHHHHEEEEECSSS-------EEEEECCSSH---H
T ss_pred             HHHHHHhheecccc-----cccccchhHHHHhhhHHHHHHHHHHHHHHHheeeeccCCc-------eEEeecCCch---h
Confidence            58999999999999     6668999999999999999999999999876654433221       2377554332   2


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC-------c------------------------------
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGE-------L------------------------------  123 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~-------~------------------------------  123 (647)
                      +...|.+...++.+++|+++|+++|.+|++.++++.++..+.       +                              
T Consensus       205 ~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (502)
T 3odu_A          205 WVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKS  284 (502)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHGGGCSCCHHHHHHHHTCCEEEEEECTTSCEEEETTEEEECSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhccccccccCCCccccccccccccCcCccccccch
Confidence            345566777788899999999999999999999865542100       0                              


Q ss_pred             --------------------------------------------------------------------------------
Q psy9472         124 --------------------------------------------------------------------------------  123 (647)
Q Consensus       124 --------------------------------------------------------------------------------  123 (647)
                                                                                                      
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (502)
T 3odu_A          285 ELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQK  364 (502)
T ss_dssp             HHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHTCCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred             hhhcccCcchhhhhhccccccchhhcccccccccccCccccccccCCCCCCcchhhhhhhhhchhhcccCccccchhhhc
Confidence                                                                                            


Q ss_pred             ----------------------------------chhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCC--
Q psy9472         124 ----------------------------------QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTA--  167 (647)
Q Consensus       124 ----------------------------------~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~--  167 (647)
                                                        +....+.++|+|+++++++++++|++||+||.++.++..+....  
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~  444 (502)
T 3odu_A          365 RWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEII  444 (502)
T ss_dssp             CHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHCSSHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             hhhhhccccccccccccCcchhhhccccccccccchhhhhhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence                                              00001234579999999999999999999999999887764221  


Q ss_pred             --CCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccccccc
Q psy9472         168 --PDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSK  219 (647)
Q Consensus       168 --~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~  219 (647)
                        ..........+..++.+++++||++||+||++++++||++++++++|+++..
T Consensus       445 ~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~~~~~  498 (502)
T 3odu_A          445 KQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLE  498 (502)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCCCCCCHHHHHSSCSSCG
T ss_pred             hhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHHHHHHHHHHhccCCchh
Confidence              1122334456667899999999999999999999999999999998876554

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.91  E-value=1.7e-24  Score=231.31  Aligned_cols=195  Identities=16%  Similarity=0.258  Sum_probs=136.2

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||+||+ |++     |..+++++++..+++++|++++++++|+++.+...  .+       ...|...++.     
T Consensus       156 isidRy~aI~-p~~-----~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~--~~-------~~~C~~~~~~-----  215 (520)
T 3v2y_A          156 IAIERYITML-KMK-----LHNGSNNFRLFLLISACWVISLILGGLPIMGWNCI--SA-------LSSCSTVLPL-----  215 (520)
T ss_dssp             HHHHHHHHHC-C------------CCHHHHHHHHHHHHHHHHHHHTTTTTCBCT--TC-------GGGBCSSSTT-----
T ss_pred             HHHHHhhEEe-ccc-----cccccchhHHHHHHHHHHHHHHHHHHHHHHeeccc--cC-------CCcccccCCc-----
Confidence            5899999999 999     77789999999999999999999999888755432  11       1138765432     


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhcc----------CCCC-----C--------Cc--------------
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILST----------KNMP-----G--------EL--------------  123 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~----------~~~~-----~--------~~--------------  123 (647)
                      ....|.+ ..++.|++|+++|+++|.+|++.++++.          .+..     .        +.              
T Consensus       216 ~~~~~~~-~~~~~~~lPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~t~~~g~~~~~~~~~~~~~~~~  294 (520)
T 3v2y_A          216 YHKHYIL-FCTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSEL  294 (520)
T ss_dssp             BBHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCEECSSSSEEETTTEECCSSSCHHHHHHHH
T ss_pred             cchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccccceeEecccccccccccccccchh
Confidence            2234443 4556699999999999999999998764          0000     0        00              


Q ss_pred             --------------------------------------------------------------------c-----------
Q psy9472         124 --------------------------------------------------------------------Q-----------  124 (647)
Q Consensus       124 --------------------------------------------------------------------~-----------  124 (647)
                                                                                          +           
T Consensus       295 ~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  374 (520)
T 3v2y_A          295 DKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRW  374 (520)
T ss_dssp             HHHHTSCCTTCCCHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHSCHHHHHHHHHHHHHSCHHHHHTCHHHHHHHHTTCH
T ss_pred             hhHHHHhcCCcccHHHhhhHHHhccccccccccccccCCCcCCccchhhhHHHHHHHHccCCCcccccccccccccccch
Confidence                                                                                0           


Q ss_pred             --------------hhH-HH------------------HHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCh
Q psy9472         125 --------------GQT-RQ------------------IRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDY  171 (647)
Q Consensus       125 --------------~~~-~~------------------~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~  171 (647)
                                    +.. +.                  .++++|+++|+++++++|++||+||++..++..+........
T Consensus       375 ~~~~~~~~~s~~~~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~F~vcw~P~~i~~~~~~~~~~~~~~~  454 (520)
T 3v2y_A          375 DEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDI  454 (520)
T ss_dssp             HHHHHHHHHSHHHHHSHHHHHHHHHHHHHCSGGGTCSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTCST
T ss_pred             hhHhhhhhccchhhhcccchhhHHHHhhcchhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccH
Confidence                          000 00                  014889999999999999999999999999988765432221


Q ss_pred             hhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccccccc
Q psy9472         172 NDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKI  220 (647)
Q Consensus       172 ~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~~  220 (647)
                      .    ....++.+++++||++||+||++++++||++++++++|+.....
T Consensus       455 ~----~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~~  499 (520)
T 3v2y_A          455 L----FRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPLEVLF  499 (520)
T ss_dssp             T----TSCHHHHHHHHHGGGTHHHHHHHHCHHHHHHHHTTCCSCC----
T ss_pred             H----HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhccccc
Confidence            1    22345677999999999999999999999999999987655443

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.91  E-value=2.3e-24  Score=227.02  Aligned_cols=198  Identities=19%  Similarity=0.339  Sum_probs=144.4

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||+||++|++     |..+++++++..+++++|++++++++|.+++...........    ...|..++..     
T Consensus       102 is~dRy~aI~~P~~-----~~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~----~~~C~~~~~~-----  167 (452)
T 3rze_A          102 LCIDRYRSVQQPLR-----YLKYRTKTRASATILGAWFLSFLWVIPILGWNHFMQQTSVRR----EDKCETDFYD-----  167 (452)
T ss_dssp             HHHHHHHHHHCSCC-----TTTTSSHHHHHHHHHHHHHHHGGGHHHHHCCCC-------CC----SSSSCCSCTT-----
T ss_pred             HHHHHHHheeCccc-----cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC----CCeecCCCcc-----
Confidence            58999999999999     777899999999999999999999998664433222111111    1126543322     


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc-------------------------------------
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGEL-------------------------------------  123 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~-------------------------------------  123 (647)
                       ...|.+...++.+++|+++++++|.+|++.++++.++.....                                     
T Consensus       168 -~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (452)
T 3rze_A          168 -VTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSE  246 (452)
T ss_dssp             -CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHCEEEEEEECTTSCEEEEETEECSSCSSHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhhhhcccCCcccccccccccccCCCCCccccc
Confidence             245677778888999999999999999999987644310000                                     


Q ss_pred             -------------c------------------------------------------------------------------
Q psy9472         124 -------------Q------------------------------------------------------------------  124 (647)
Q Consensus       124 -------------~------------------------------------------------------------------  124 (647)
                                   .                                                                  
T Consensus       247 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (452)
T 3rze_A          247 LDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKR  326 (452)
T ss_dssp             HHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHSCHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHTTC
T ss_pred             ccCCCCCCCCccccCCcccchhcCCCcccccCcccccccCCcccCCCccccccccccccccCCCCCCccccCcchhhhcC
Confidence                         0                                                                  


Q ss_pred             ------------------hhH---------------HHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCh
Q psy9472         125 ------------------GQT---------------RQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDY  171 (647)
Q Consensus       125 ------------------~~~---------------~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~  171 (647)
                                        .+.               ...++|+|+++++++++++|++||+||.+..++..+....... 
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~~~~~-  405 (452)
T 3rze_A          327 WDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNE-  405 (452)
T ss_dssp             HHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCT-
T ss_pred             CccccccccCCccCCCCCcccchhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccccH-
Confidence                              000               0123788999999999999999999999999998876543322 


Q ss_pred             hhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccccccc
Q psy9472         172 NDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSK  219 (647)
Q Consensus       172 ~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~  219 (647)
                           .+..++.+++++|+++||+||++++++||++++++++|+++.+
T Consensus       406 -----~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~~~~~  448 (452)
T 3rze_A          406 -----HLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIRSGEN  448 (452)
T ss_dssp             -----TTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTC-----
T ss_pred             -----HHHHHHHHHHHHHhcccchhhhhccHHHHHHHHHHHHhccccc
Confidence                 2345788899999999999999999999999999998876543

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.91  E-value=2.9e-24  Score=225.68  Aligned_cols=195  Identities=19%  Similarity=0.226  Sum_probs=148.8

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||+||++|++     |+.+.+++++..+++++|++++++++|+++.+.........      ..|..++...+  .
T Consensus       129 isidRy~aI~~P~~-----~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~------~~c~~~~~~~~--~  195 (448)
T 2z73_A          129 ISIDRYNVIGRPMA-----ASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVL------CNCSFDYISRD--S  195 (448)
T ss_dssp             HHHHHHHHTTSCTT-----TCCCCCHHHHHHHHHHHHHHHHHHHSGGGGTSSCEEECTTS------SSEEECCSCCS--H
T ss_pred             HHHHHHHhcccccc-----ccceechhHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCc------eeEecccccCC--c
Confidence            58999999999999     77789999999999999999999999887765443332211      12765543322  1


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCC--------CCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhh
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNM--------PGELQGQTRQIRARKKVAKTVLTFVVVFAMCFF  152 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~  152 (647)
                      ....+.....++.+++|+++++++|.+|.+.++++.++.        .++.+...+..++|+|++|++++++++|++||+
T Consensus       196 ~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~iv~~F~i~~~  275 (448)
T 2z73_A          196 TTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWS  275 (448)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhccccHHHHHHHHHHHHHHHHHHHhH
Confidence            234566667778899999999999999999888754321        111122223445788999999999999999999


Q ss_pred             hHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhc
Q psy9472         153 PQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLF  213 (647)
Q Consensus       153 P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~  213 (647)
                      |+.+..++..+......     ...+..+..+++++|+++||+||++++++||++++++++
T Consensus       276 P~~i~~~~~~~~~~~~~-----~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~  331 (448)
T 2z73_A          276 PYAVVALLAQFGPLEWV-----TPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP  331 (448)
T ss_dssp             HHHHHHHHHHHSCGGGC-----CHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHhCCcccC-----ChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHH
Confidence            99999998877532111     134556778899999999999999999999999999884

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.91  E-value=1.1e-24  Score=230.30  Aligned_cols=199  Identities=21%  Similarity=0.400  Sum_probs=149.7

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||+||++|++     |+.+.+++++..+++++|++++++++|+++..........       ..|...+..... .
T Consensus       110 is~dRy~aI~~P~~-----~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~-------~~c~~~~~~~~~-~  176 (464)
T 4dkl_A          110 MSVDRYIAVCHPVK-----ALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGS-------IDCTLTFSHPTW-Y  176 (464)
T ss_dssp             HHHHHHHHHHCHHH-----HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSBCCEEETTE-------EECCBCCSSSHH-H
T ss_pred             HHHHHHHHhhcccc-----ccccccccHhHHhHHHHHHHHHHHHHHHHHheeecccCCC-------ceEEeecCCcch-H
Confidence            58999999999999     6668899999999999999999999998876554433221       236655433221 1


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc-------------------------------------
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGEL-------------------------------------  123 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~-------------------------------------  123 (647)
                      +...|.+...++.+++|+++++++|.+|++.++++.+......                                     
T Consensus       177 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (464)
T 4dkl_A          177 WENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRNIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKSPSLNAAKSE  256 (464)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCCCSHHHHHHHHHCCEEEEEECTTSCEEEETTEEEESSSCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccccccccCCCCCccccccccccCCCcccccccc
Confidence            2345667778888999999999999999999987655110000                                     


Q ss_pred             -------------c------------------------------------------------------------------
Q psy9472         124 -------------Q------------------------------------------------------------------  124 (647)
Q Consensus       124 -------------~------------------------------------------------------------------  124 (647)
                                   .                                                                  
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (464)
T 4dkl_A          257 LDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKR  336 (464)
T ss_dssp             HHHHHSSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHTSCHHHHHHHHHHHHHHCHHHHHTCHHHHHHHHTTC
T ss_pred             ccccccccccceecCCccccccccCCcccccccccCCCCCccccCcccccchhhhhccccCCCCCcccccccccchhhcc
Confidence                         0                                                                  


Q ss_pred             ---------------------------------hhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCh
Q psy9472         125 ---------------------------------GQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDY  171 (647)
Q Consensus       125 ---------------------------------~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~  171 (647)
                                                       ...+..++|+|++|++++++++|++||+|+.+..++..+......  
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~~~~~~~~--  414 (464)
T 4dkl_A          337 WDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPET--  414 (464)
T ss_dssp             HHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC--
T ss_pred             cchhhcccccccccccCccccceeeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCcc--
Confidence                                             000012567899999999999999999999999999887653322  


Q ss_pred             hhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccc
Q psy9472         172 NDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCK  215 (647)
Q Consensus       172 ~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~  215 (647)
                       .....+..++.+++++||++||+||++++++||++++++++++
T Consensus       415 -~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~lc~~~  457 (464)
T 4dkl_A          415 -TFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCIPT  457 (464)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC--
T ss_pred             -ccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHHHHhccc
Confidence             2335566788889999999999999999999999999975543

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.90  E-value=2.6e-24  Score=228.55  Aligned_cols=194  Identities=22%  Similarity=0.322  Sum_probs=145.3

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||+||++|+++..  .....+++++..+++++|++++++++|+++.....   ...      ..|...        
T Consensus       133 is~dRy~aI~~P~~~~~--~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~---~~~------~~C~~~--------  193 (481)
T 3pbl_A          133 ISIDRYTAVVMPVHYQH--GTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTT---GDP------TVCSIS--------  193 (481)
T ss_dssp             HHHHHHHHHHSHHHHHH--TTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCCC---SST------TCCSCC--------
T ss_pred             HHHHHHHhccccccccc--ccccccHHHHHHHHHHHHHHHHHHHHHHHheeccc---CCC------Cccccc--------
Confidence            58999999999999321  15678999999999999999999999988754321   111      126432        


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcc------------------------------------
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQ------------------------------------  124 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~------------------------------------  124 (647)
                       ...|.....++.+++|+++++++|.+|++.++++.++......                                    
T Consensus       194 -~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (481)
T 3pbl_A          194 -NPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAK  272 (481)
T ss_dssp             -CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCSSCEECSSSCEEETTTEEEESSSCHHHHH
T ss_pred             -CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhccccccCcccceeecccccccCCcccccCC
Confidence             2446677788889999999999999999999887654210000                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy9472         125 --------------------------------------------------------------------------------  124 (647)
Q Consensus       125 --------------------------------------------------------------------------------  124 (647)
                                                                                                      
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (481)
T 3pbl_A          273 SELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQ  352 (481)
T ss_dssp             HHHHHHHTSCCTTCCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             CcccchhccCCCceeccCCchhcccCCcccccccccccCccCccccccccccchhccccccccCCCCCCCcccccchhcc
Confidence                                                                                            


Q ss_pred             ------------------hhHHH-----------------HHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCC
Q psy9472         125 ------------------GQTRQ-----------------IRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPD  169 (647)
Q Consensus       125 ------------------~~~~~-----------------~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~  169 (647)
                                        ...+.                 .++|+|+++|+++++++|++||+||.+..++..+......
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~  432 (481)
T 3pbl_A          353 KRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHV  432 (481)
T ss_dssp             TCHHHHHHHHHTSHHHHHSHHHHHHHHHHHHHSSSTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCC
T ss_pred             ccccccchhhhccccccCCcccccccceeecccccccccccchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccC
Confidence                              00000                 0258999999999999999999999999998877543222


Q ss_pred             ChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccccccc
Q psy9472         170 DYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSK  219 (647)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~  219 (647)
                      .     ..+..++.+++++|+++||+||++++++||++++++++|+++.+
T Consensus       433 ~-----~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c~~~~~  477 (481)
T 3pbl_A          433 S-----PELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSCGRPLE  477 (481)
T ss_dssp             C-----HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC-----
T ss_pred             c-----HHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHHHHhccCcHH
Confidence            1     34667788999999999999999999999999999998876543

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.89  E-value=3e-24  Score=229.47  Aligned_cols=199  Identities=22%  Similarity=0.342  Sum_probs=142.2

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      ||+|||+||++|++     |+.+.+++++..+++++|++++++++++++..+.......      ...|....... ...
T Consensus       276 isidRy~aI~~Pl~-----~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~~~~~~~~~~~~------~~~c~~~~~~~-~~~  343 (514)
T 3sn6_R          276 IAVDRYFAITSPFK-----YQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQE------AINCYAEETCC-DFF  343 (514)
T ss_dssp             HHHHHHHHHHSHHH-----HHHHCCHHHHHHHHHHHHHHHHHTTHHHHHTTTTC---CH------HHHHHHSSSCC-CCC
T ss_pred             HHHHHHHHcCCccc-----cchhccchHHHHHHHHHHHHHHHHHhhhhhccceecccCc------ccceeeccccc-ccc
Confidence            58999999999999     6668999999999999999999998766644332211111      01143322111 122


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC---------------------cchhHHHHHHHhHhHHH
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGE---------------------LQGQTRQIRARKKVAKT  139 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~k~~~~  139 (647)
                      ....|.+...++.+++|+++++++|.+|++.++++.++..+.                     .+...+..++++|++++
T Consensus       344 ~~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  423 (514)
T 3sn6_R          344 TNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKT  423 (514)
T ss_dssp             CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------------CHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccchhhhhHHHHHHHHH
Confidence            346777888889999999999999999999987653321100                     00111223477899999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccccc
Q psy9472         140 VLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSS  218 (647)
Q Consensus       140 ~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~  218 (647)
                      +++++++|++||+|+.+..++..+......      ..+..++.+++++||++||+||+ ++++||++++++++|++++
T Consensus       424 l~~iv~~F~lcwlP~~i~~~~~~~~~~~~~------~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~~~~~~  495 (514)
T 3sn6_R          424 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIR------KEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSS  495 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTSSC------HHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccc------hHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhCcCccc
Confidence            999999999999999999998877543211      34556788899999999999999 9999999999999876544

>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}

Probab=98.48  E-value=1.7e-08  Score=64.58  Aligned_cols=37  Identities=24%  Similarity=0.269  Sum_probs=33.1

Q ss_pred             HHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccc
Q psy9472         179 RIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCK  215 (647)
Q Consensus       179 ~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~  215 (647)
                      ..++.+++++||++||+||++++++||+++++.++|+
T Consensus         3 ~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~~~   39 (40)
T 2koe_A            3 FAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFPSA   39 (40)
T ss_dssp             HHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhhhc
Confidence            3567889999999999999999999999999988764

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=98.15  E-value=3.8e-07  Score=54.84  Aligned_cols=30  Identities=33%  Similarity=0.556  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHhhhheeeccccccccCCCcccccc
Q psy9472         389 VSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATR  423 (647)
Q Consensus       389 ~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~  423 (647)
                      +|++++++||+|||++|++|++     |....+++
T Consensus         2 ~Si~~L~~is~dRy~aI~~Pl~-----~~~~~t~~   31 (32)
T 1hll_A            2 SSIVHLCAISLDRYWSITQAIE-----YNLKRTPR   31 (32)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHG-----GGSSCCCC
T ss_pred             cHHHHHHHHHHHHHHHhhhhhh-----cccccCCC
Confidence            6899999999999999999999     66666654

>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}

Probab=97.97  E-value=8.1e-07  Score=53.58  Aligned_cols=29  Identities=24%  Similarity=0.440  Sum_probs=25.5

Q ss_pred             HhHhHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9472         133 RKKVAKTVLTFVVVFAMCFFPQHFFFLWF  161 (647)
Q Consensus       133 ~~k~~~~~~~i~~~f~~~~~P~~i~~~~~  161 (647)
                      |+|++|++++++++|++||+||++..++.
T Consensus         1 e~k~~k~l~~vv~~F~icW~P~~i~~~~~   29 (33)
T 2ki9_A            1 DVRLAKTLGLVLAVLLICWFPVLALMAHS   29 (33)
T ss_dssp             CCSSSSHHHHHHHHHTTTSSHHHHHHTTT
T ss_pred             CchhhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence            46889999999999999999999977654

>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}

Probab=97.83  E-value=2.7e-06  Score=51.21  Aligned_cols=30  Identities=23%  Similarity=0.425  Sum_probs=26.0

Q ss_pred             hhhhhHHHHHHHHHHhhccccHHHHHHHHH
Q psy9472         529 RKKVAKTVLTFVVVFAMCFFPQHFFFLWFY  558 (647)
Q Consensus       529 ~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~  558 (647)
                      |+|++|++.+++++|++||+||++..++..
T Consensus         1 e~k~~k~l~~vv~~F~icW~P~~i~~~~~~   30 (33)
T 2ki9_A            1 DVRLAKTLGLVLAVLLICWFPVLALMAHSL   30 (33)
T ss_dssp             CCSSSSHHHHHHHHHTTTSSHHHHHHTTTT
T ss_pred             CchhhhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence            357899999999999999999999877644

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=97.29  E-value=1.7e-05  Score=47.44  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=17.9

Q ss_pred             CccceehhhhccccccccCCCCcccch
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATR   27 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~   27 (647)
                      ||+|||+||++|++     |...++++
T Consensus        10 is~dRy~aI~~Pl~-----~~~~~t~~   31 (32)
T 1hll_A           10 ISLDRYWSITQAIE-----YNLKRTPR   31 (32)
T ss_dssp             HHTHHHHHHHHHHG-----GGSSCCCC
T ss_pred             HHHHHHHHhhhhhh-----cccccCCC
Confidence            58999999999999     55566654

>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}

Probab=96.85  E-value=0.00019  Score=45.41  Aligned_cols=33  Identities=12%  Similarity=0.065  Sum_probs=25.6

Q ss_pred             HHHHHhhhhhccC-chhHHhhcCCccccccccccCC
Q psy9472         573 ILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSV  607 (647)
Q Consensus       573 ~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~  607 (647)
                      +..++++  +|++ ||+||.++++.+|...++..++
T Consensus         5 ~~~~l~~--~ns~lNPiIY~~~~~~fr~~~~~~~~~   38 (40)
T 2koe_A            5 FASMLCL--LNSTVNPIIYALRSKDLRHAFRSMFPS   38 (40)
T ss_dssp             HHHHHHH--HHHHSSTTTTBTTBHHHHHHHTTTCCC
T ss_pred             HHHHHHH--HHHHHHHHHHHHccHHHHHHHHHHhhh
Confidence            4445555  9999 9999999998888877776544

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=96.29  E-value=0.00067  Score=46.95  Aligned_cols=31  Identities=26%  Similarity=0.702  Sum_probs=27.7

Q ss_pred             hHHHHHHHHHHHHHHhhHHhhhhhhhcCCCC
Q psy9472         305 LVPIVFAFIFVVGVLGNGTLVLIFINHKSMR  335 (647)
Q Consensus       305 ~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~  335 (647)
                      +..++|++++++|++||+++++++.++|..+
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~~~   60 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKGHH   60 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEecccc
Confidence            7889999999999999999999998887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	647
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	7e-20
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	3e-11

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.3 bits (220), Expect = 7e-20
 Identities = 42/266 (15%), Positives = 101/266 (37%), Gaps = 16/266 (6%)

Query: 296 PYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILT 355
             +E  +  ++      + ++G   N   + + + HK +R   N  +L+LA+ DL ++  
Sbjct: 30  YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 89

Query: 356 CVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSG 415
               T        + +G + C +      +   +++++L  L+ +R+  +  P+     G
Sbjct: 90  GFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFG 149

Query: 416 IGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYP 475
                            W+ A+ CA P +        +    +      C          
Sbjct: 150 ENHAIMGVA------FTWVMALACAAPPLVGWSRYIPEGMQCS------CGIDYYTPHEE 197

Query: 476 NYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKT 535
               + +I  F++++ +PL++I   Y  +    + + K    + Q      +A K+V + 
Sbjct: 198 TNNESFVIYMFVVHFIIPLIVIFFCYGQL----VFTVKEAAAQQQESATTQKAEKEVTRM 253

Query: 536 VLTFVVVFAMCFFPQHFFFLWFYINP 561
           V+  V+ F +C+ P      + + + 
Sbjct: 254 VIIMVIAFLICWLPYAGVAFYIFTHQ 279

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.7 bits (151), Expect = 3e-11
 Identities = 28/194 (14%), Positives = 65/194 (33%), Gaps = 9/194 (4%)

Query: 37  WIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAV 96
              A    +     +             +  SC              + +I  F++++ +
Sbjct: 155 MGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFII 214

Query: 97  PLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHF 156
           PL++I   Y  +    + + K    + Q      +A K+V + V+  V+ F +C+ P   
Sbjct: 215 PLIVIFFCYGQL----VFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAG 270

Query: 157 FFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKM 216
              + + +       +DF  I   +       ++  NP+    ++  FR      L C  
Sbjct: 271 VAFYIFTHQG-----SDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGK 325

Query: 217 SSKIINSRNANARR 230
           +    +  +    +
Sbjct: 326 NPLGDDEASTTVSK 339

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	647
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.9

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.9e-35  Score=292.72  Aligned_cols=298  Identities=15%  Similarity=0.235  Sum_probs=234.2

Q ss_pred             CccchhhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecccccccc
Q psy9472         295 KPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGES  374 (647)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~  374 (647)
                      ....+.....++.+++.+++++|++||+++++++.++|++|++.|++++|||++|++.++...|..+.....+.|..+..
T Consensus        29 ~~~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~  108 (348)
T d1u19a_          29 YYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPT  108 (348)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCch
Confidence            34444556678889999999999999999999999999999999999999999999999988888877777788888899


Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeec
Q psy9472         375 ICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKD  454 (647)
Q Consensus       375 ~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~  454 (647)
                      .|....++...+..+++++++++++|||.+|++|++     |+. .++++....++++|.+++++..|+.+.........
T Consensus       109 ~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (348)
T d1u19a_         109 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-----NFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG  182 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSS-----SCC-CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEET
T ss_pred             hhhhhhhccccceeeecchhhhhhcccceeeecccc-----ccc-cccccccccceeeehhhhheecccccccceeccCC
Confidence            999999999999999999999999999999999999     554 45667777888889899888888777655444332


Q ss_pred             CCCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhH
Q psy9472         455 DTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAK  534 (647)
Q Consensus       455 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~  534 (647)
                      .      ...|...............+.++...+.+++|+++++++|.++.++++++.+...    ....+.++++|.+|
T Consensus       183 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~  252 (348)
T d1u19a_         183 M------QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ----ESATTQKAEKEVTR  252 (348)
T ss_dssp             T------TTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSC----SSSHHHHHHHHHHH
T ss_pred             c------ccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc----hhhhhHHHHhhHhh
Confidence            2      1234333333332344566667777888899999999999999988876554332    23445577899999


Q ss_pred             HHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCccccccccccCCCCCC
Q psy9472         535 TVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSVSTTH  611 (647)
Q Consensus       535 ~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~~~~~  611 (647)
                      ++++++++|++||+|+.+..++.......... ........+++.  +|++ ||+||.++++.+|+..++.++++++.
T Consensus       253 ~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~-~~~~~~~~~l~~--~ns~iNPiIY~~~~~~fR~~~~~~l~c~~~~  327 (348)
T d1u19a_         253 MVIIMVIAFLICWLPYAGVAFYIFTHQGSDFG-PIFMTIPAFFAK--TSAVYNPVIYIMMNKQFRNCMVTTLCCGKNP  327 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCC-HHHHHHHHHHGG--GGGTHHHHHHHHTCHHHHHHHHHHHTSSCCC
T ss_pred             eEEEeehHHHHHhhHHHhhhheeeccCCcccc-HHHHHHHHHHHH--HHHHHHHHHHHhcCHHHHHHHHHHhCCCCCC
Confidence            99999999999999999988887776544333 223344444555  9999 99999999988888888776554443

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.1e-23  Score=209.00  Aligned_cols=200  Identities=17%  Similarity=0.287  Sum_probs=151.8

Q ss_pred             CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472           1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN   80 (647)
Q Consensus         1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~   80 (647)
                      |++|||++|++|++     |.. .++++....++++|..++++..|+.+............      .|...........
T Consensus       131 is~~R~~~i~~p~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  198 (348)
T d1u19a_         131 LAIERYVVVCKPMS-----NFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQC------SCGIDYYTPHEET  198 (348)
T ss_dssp             HHHHHHHHHTCCSS-----SCC-CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETTTT------EEECCCSCCCGGG
T ss_pred             hhcccceeeecccc-----ccc-cccccccccceeeehhhhheecccccccceeccCCccc------ccccccccccccc
Confidence            47899999999999     444 56677778888889999888888776654443333221      2544444333334


Q ss_pred             CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9472          81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW  160 (647)
Q Consensus        81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~  160 (647)
                      ....+.+....+.+++|+++++++|.++.++++++.+..++    ...+.++|+|.+|++++++++|++||+||.+..++
T Consensus       199 ~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~  274 (348)
T d1u19a_         199 NNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQE----SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFY  274 (348)
T ss_dssp             THHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSCS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccch----hhhhHHHHhhHhheEEEeehHHHHHhhHHHhhhhe
Confidence            45667777788888999999999999998888765544332    33455678999999999999999999999999888


Q ss_pred             HHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccccccccc
Q psy9472         161 FYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKII  221 (647)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~~~  221 (647)
                      .......+..     .....++.+++++|+++||+||++++++||++++++++|++++...
T Consensus       275 ~~~~~~~~~~-----~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~l~c~~~~~~~  330 (348)
T d1u19a_         275 IFTHQGSDFG-----PIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGD  330 (348)
T ss_dssp             HHHTTTSCCC-----HHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSCCCTTT
T ss_pred             eeccCCcccc-----HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCC
Confidence            7765543332     3455678889999999999999999999999999999887655433