Psyllid ID: psy9489

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARSGAKNGPSLGKYHDFPNVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP
Secondary Structure (PSIPRED)
ccccccccccEEEcccEEEHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEcccccccccccccccccEEcccEEEEcccccccccHHHHHHcccccccccccccEEEEEEccEEEEEEEcccccccEEEEcccccEEEEcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccEEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccHcccccccccccHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEccEEEEEEccEEEEEEEccEEEccEEEEcccccEEEEcccEEEEEEEEHHHHHHHHHHHHHHHHccEEEccEEEEEEccEEEEEEEccEEEccEEEEcccccEEEEcccEEEEEEEEHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccHHEEEEEEcccccc
Coil and Loop (DISEMBL)
FLGTVDKLGTAyedkilsfgfgthiavpllrqeteknpqmSKEEAIALIKTCMDLLYVRdarsgakngpslgkyhdfpnvlphyfrrsgsfstplttgtsVLGLVFNGGVILaadsagyygsmmrfndcprimqinkftilgagndyadfqYLNDIVkqkitplttgtsvlGLVFNGGVILaadsagyygsmmrfndcprimqinkftilgagndyadfqYLNDIVKqkildddlhndgfvlkpkslHSWLTRVLYnrrsqfdplWINAFVAGMQNGEP
Flexible Loop (DISEMBL)
flgtvdklGTAYEDKILSFGFGTHIAVPLLrqeteknpqmSKEEAIALIKTCMDLLYVRDARSgakngpslgkyhdFPNVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP
Low Complexity Region (SEG)
FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARSGAKNGPSLGKYHDFPNVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP
Disordered region (IsUnstruct)
*****DKLGTAYEDKILSFGFGTHIAVPLLR*************AIALIKTCMDLLYVRDARSGA**GPSLGKYHDFPNVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG******
Disordered Region (DISOPRED)
FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQET********EEAIALIKTCMDLLYVRDARSGAKNGPSLGKYHDFP************FSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN***
Disordered Region (DISEMBL)
FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARSGAKNGPSLGKYHDFPNVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP
Disordered Region (DISPRO)
FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARSGAKNGPSLGK**D************GSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARSGAKNGPSLGKYHDFPNVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
P28024	242	Proteasome subunit beta t	N/A	N/A	0.419	0.483	0.532	1e-35
Q3T108	264	Proteasome subunit beta t	yes	N/A	0.487	0.515	0.474	7e-33
P28070	264	Proteasome subunit beta t	yes	N/A	0.473	0.5	0.473	3e-32
P99026	264	Proteasome subunit beta t	yes	N/A	0.437	0.462	0.483	4e-32
P34067	263	Proteasome subunit beta t	yes	N/A	0.387	0.410	0.5	3e-31
Q29384	154	Proteasome subunit beta t	no	N/A	0.347	0.629	0.518	2e-30
Q9VNA5	268	Proteasome subunit beta t	yes	N/A	0.394	0.410	0.459	2e-23
Q7DLR9	246	Proteasome subunit beta t	yes	N/A	0.419	0.475	0.380	6e-23
Q9USQ9	262	Probable proteasome subun	yes	N/A	0.440	0.469	0.384	7e-23
Q556Q0	259	Proteasome subunit beta t	yes	N/A	0.433	0.467	0.377	2e-19

>sp|P28024|PSB4_XENLA Proteasome subunit beta type-4 (Fragment) OS=Xenopus laevis GN=psmb4 PE=2 SV=2

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 65/122 (53%), Positives = 89/122 (72%)

Query: 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
           V+  + P+ TGTSVLG+ F+GGVI+AAD  G YGS+ RF +  RIM++N+ TILGA  DY
Sbjct: 21  VRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGDY 80

Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
           AD+QYL  ++ Q ++D++L  DG    PK++HSWLTRV+YNRRS+ +PLW    + G  N
Sbjct: 81  ADYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFYN 140

Query: 277 GE 278
           GE
Sbjct: 141 GE 142

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.
Xenopus laevis (taxid: 8355)
EC: 3EC: .EC: 4EC: .EC: 2EC: 5EC: .EC: 1

>sp|Q3T108|PSB4_BOVIN Proteasome subunit beta type-4 OS=Bos taurus GN=PSMB4 PE=1 SV=1

 Score =  140 bits (354), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 65/137 (47%), Positives = 91/137 (66%), Gaps = 1/137 (0%)

Query: 142 GAGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRI 201
           G+  D     Y + I + +  P+ TGTSVLGL F GGV++AAD  G YGS+ RF +  RI
Sbjct: 29  GSSVDPVSALYGSPITRTQ-NPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRI 87

Query: 202 MQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQ 261
           M++N  T+LGA  DYADFQYL  ++ Q ++D++L  DG    PK++HSWLTR +Y+RRS+
Sbjct: 88  MRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSK 147

Query: 262 FDPLWINAFVAGMQNGE 278
            +PLW    + G  +GE
Sbjct: 148 MNPLWNTMVIGGYADGE 164

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P28070|PSB4_HUMAN Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4

 Score =  139 bits (349), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/133 (47%), Positives = 89/133 (66%), Gaps = 1/133 (0%)

Query: 146 DYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN 205
           D A   Y   I + +  P+ TGTSVLG+ F GGV++AAD  G YGS+ RF +  RIM++N
Sbjct: 33  DPASALYRGPITRTQ-NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVN 91

Query: 206 KFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPL 265
             T+LGA  DYADFQYL  ++ Q ++D++L  DG    P+++HSWLTR +Y+RRS+ +PL
Sbjct: 92  NSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPL 151

Query: 266 WINAFVAGMQNGE 278
           W    + G  +GE
Sbjct: 152 WNTMVIGGYADGE 164

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Mediates the lipopolysaccharide-induced signal macrophage proteasome (By similarity). SMAD1/OAZ1/PSMB4 complex mediates the degradation of the CREBBP/EP300 repressor SNIP1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P99026|PSB4_MOUSE Proteasome subunit beta type-4 OS=Mus musculus GN=Psmb4 PE=1 SV=1

 Score =  138 bits (348), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 59/122 (48%), Positives = 86/122 (70%)

Query: 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
           + +   P+ TGTSVLG+ F+GGV++AAD  G YGS+ RF +  RIM++N  T+LGA  DY
Sbjct: 43  ITRTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDY 102

Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
           ADFQYL  ++ Q ++D++L  DG    P+++HSWLTR +Y+RRS+ +PLW    + G  +
Sbjct: 103 ADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD 162

Query: 277 GE 278
           GE
Sbjct: 163 GE 164

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Mediates the lipopolysaccharide-induced signal macrophage proteasome. SMAD1/OAZ1/PSMB4 complex mediates the degradation of the CREBBP/EP300 repressor SNIP1.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P34067|PSB4_RAT Proteasome subunit beta type-4 OS=Rattus norvegicus GN=Psmb4 PE=1 SV=2

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 82/116 (70%)

Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
           P+ TGTSVLG+ F+ GV++AAD  G YGS+ RF +  RIM++N  T+LGA  DYADFQYL
Sbjct: 48  PMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 107

Query: 223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
             ++ Q ++D++L  DG    P+++HSWLTR +Y+RRS+ +PLW    + G   GE
Sbjct: 108 KQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIGGYAGGE 163

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. SMAD1/OAZ1/PSMB4 complex mediates the degradation of the CREBBP/EP300 repressor SNIP1.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q29384|PSB4_PIG Proteasome subunit beta type-4 (Fragment) OS=Sus scrofa GN=PSMB4 PE=2 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 79/110 (71%)

Query: 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
           + +   P+ TGTSVLG+ F GGV++AAD  G YGS+ RF +  RIM++N  T+LGA  DY
Sbjct: 43  ITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDY 102

Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLW 266
           ADFQYL  ++ Q ++D++L  DG    PK++HSWLTR +YNRR + +PLW
Sbjct: 103 ADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYNRRFKMNPLW 152

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q9VNA5|PSB4_DROME Proteasome subunit beta type-4 OS=Drosophila melanogaster GN=Prosbeta7 PE=2 SV=1

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 76/111 (68%), Gaps = 1/111 (0%)

Query: 170 VLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK 229
           VLG+ ++ GV+LAAD+   YGSM R+ +  R+ ++NK  +LG   D+AD Q +   + QK
Sbjct: 60  VLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSIKRNIDQK 119

Query: 230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP 279
           +++D   +D   +KPKSL SW+TRVLYNRRS+ +PL+I+  V G+ N G P
Sbjct: 120 MIEDQCCDDNIEMKPKSLASWMTRVLYNRRSRMNPLYIDVVVGGVDNEGTP 170

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q7DLR9|PSB4_ARATH Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2

 Score =  108 bits (269), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 82/121 (67%)

Query: 158 KQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYA 217
           ++ + P  TGTS++ + +  GV++A+D  G YGS +R+ +  R+  I K ++LGA  + +
Sbjct: 22  QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEIS 81

Query: 218 DFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG 277
           DFQ +   + +  L+D++ +DG  L PK +H++LTRV+YNRR++F+PLW    + G++NG
Sbjct: 82  DFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNG 141

Query: 278 E 278
           +
Sbjct: 142 K 142

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q9USQ9|PSB7_SCHPO Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC577.10 PE=3 SV=1

 Score =  107 bits (268), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 82/125 (65%), Gaps = 2/125 (1%)

Query: 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
           +++ + P+ TG+SVL L F  GV++AAD+   YGS+ RF D  R+ ++   TI+GAG D 
Sbjct: 33  IQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDI 92

Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM-- 274
           +D+Q +  ++++  + +  + DG+ L+P  +H +L++VLY RR++ DP W    VAG+  
Sbjct: 93  SDYQQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDG 152

Query: 275 QNGEP 279
           +N EP
Sbjct: 153 ENKEP 157

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q556Q0|PSB4_DICDI Proteasome subunit beta type-4 OS=Dictyostelium discoideum GN=psmB4-1 PE=3 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 76/122 (62%), Gaps = 1/122 (0%)

Query: 158 KQK-ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
           KQK + P+ TGTSV+ + ++ GV++ +D    YGS+ RFN   R+ +   +TI+GA  +Y
Sbjct: 34  KQKTLDPIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEY 93

Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
           +DFQ + + +   + DD   +DG  L  + + ++L RVLYN+R++ +PLW    V G Q 
Sbjct: 94  SDFQSITNTLNDLVTDDHCMDDGSKLSSEEIWNYLARVLYNQRNRGNPLWNTLVVMGYQG 153

Query: 277 GE 278
           G+
Sbjct: 154 GK 155

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
321473527	262	hypothetical protein DAPPUDRAFT_99667 [D	0.430	0.458	0.580	2e-38
91087761	254	PREDICTED: similar to predicted protein	0.437	0.480	0.563	5e-38
389610131	262	proteasome beta7 subunit [Papilio xuthus	0.415	0.442	0.547	8e-38
242005373	265	proteasome subunit beta type 4 precursor	0.440	0.464	0.547	1e-37
241242109	154	20S proteasome, regulatory subunit beta,	0.437	0.792	0.557	3e-36
442759993	254	Putative 20s proteasome regulatory subun	0.433	0.476	0.540	1e-35
443697819	215	hypothetical protein CAPTEDRAFT_178772 [	0.415	0.539	0.560	1e-35
156542911	262	PREDICTED: proteasome subunit beta type-	0.405	0.431	0.55	6e-35
427787451	254	Putative 20s proteasome regulatory subun	0.415	0.456	0.555	8e-35
357612754	163	hypothetical protein KGM_20431 [Danaus p	0.448	0.766	0.552	1e-34

>gi|321473527|gb|EFX84494.1| hypothetical protein DAPPUDRAFT_99667 [Daphnia pulex]

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/124 (58%), Positives = 98/124 (79%)

Query: 156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND 215
           I+ +  +P+TTGTS+LGL+F+GGV+LA D  G YGSM +F    RI+++N  T+LGA  D
Sbjct: 40  IITRTQSPVTTGTSILGLIFDGGVMLAGDMLGSYGSMAKFRSIERIIKVNNSTVLGATGD 99

Query: 216 YADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQ 275
            ADFQ+L  I++QK++D+D  +DGF LKPK+LH+WLTRVLYNRRS+FDPLW    VAG++
Sbjct: 100 IADFQHLQSIIEQKVIDEDCADDGFTLKPKALHTWLTRVLYNRRSKFDPLWNTFLVAGIE 159

Query: 276 NGEP 279
           +GEP
Sbjct: 160 DGEP 163

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91087761|ref|XP_974991.1| PREDICTED: similar to predicted protein [Tribolium castaneum] gi|270009385|gb|EFA05833.1| hypothetical protein TcasGA2_TC008617 [Tribolium castaneum]

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 71/126 (56%), Positives = 96/126 (76%)

Query: 154 NDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAG 213
           +D  +    P+TT TS++ + +N GVI+A D  G YGS+ R+ +CPRIM++N   ILGAG
Sbjct: 32  SDFRQHSQAPVTTATSIVAMQYNKGVIIAGDLLGSYGSLARYRNCPRIMKVNDNIILGAG 91

Query: 214 NDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
            DYADFQY+ DI++QKI+D+D  +DGF LKPKSL+ WLTR++YNRRS+FDP W N  V G
Sbjct: 92  GDYADFQYVKDIIEQKIIDEDCLDDGFKLKPKSLYCWLTRIMYNRRSKFDPFWNNFVVGG 151

Query: 274 MQNGEP 279
           +Q+GEP
Sbjct: 152 LQDGEP 157

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389610131|dbj|BAM18677.1| proteasome beta7 subunit [Papilio xuthus]

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 69/126 (54%), Positives = 94/126 (74%)

Query: 154 NDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAG 213
            D       P+TT ++V+G+ F+ G ++AAD+ G YGS+ RF DCPR++++N   +LG+G
Sbjct: 40  QDFRAHSAAPITTTSTVIGIKFDKGCVIAADTLGSYGSLARFRDCPRVLKVNDLILLGSG 99

Query: 214 NDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
            DYAD+QYL DI++QKI+D+    DG  LKPKSLH WLTRVLYN+RS+ DPLW N  VAG
Sbjct: 100 GDYADYQYLRDIIEQKIIDEQCIGDGLQLKPKSLHCWLTRVLYNKRSKMDPLWSNYVVAG 159

Query: 274 MQNGEP 279
           +Q+GEP
Sbjct: 160 IQDGEP 165

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005373|ref|XP_002423543.1| proteasome subunit beta type 4 precursor, putative [Pediculus humanus corporis] gi|212506672|gb|EEB10805.1| proteasome subunit beta type 4 precursor, putative [Pediculus humanus corporis]

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 69/126 (54%), Positives = 98/126 (77%)

Query: 154 NDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAG 213
           N+  ++   P+TTG+SVLG+ FN GV++AAD+ G YG++ RF DC R+ ++NK  I+GAG
Sbjct: 40  NNGFQRSKEPITTGSSVLGIKFNNGVVIAADTLGSYGTLARFRDCSRVYKVNKNIIIGAG 99

Query: 214 NDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
            DYADFQYL +++ QKI+D++  +DGF +KPK+L+ WLTRVLY RR+Q DPLW N  + G
Sbjct: 100 GDYADFQYLKEVINQKIIDEECVDDGFYMKPKALYHWLTRVLYTRRTQLDPLWSNYVIGG 159

Query: 274 MQNGEP 279
           +Q+GEP
Sbjct: 160 IQDGEP 165

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241242109|ref|XP_002401910.1| 20S proteasome, regulatory subunit beta, putative [Ixodes scapularis] gi|215496245|gb|EEC05885.1| 20S proteasome, regulatory subunit beta, putative [Ixodes scapularis]

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/122 (55%), Positives = 96/122 (78%)

Query: 158 KQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYA 217
           ++ + P+ T TSVLG+ F+GGV+LAAD AGYYGS+ +  +CPR++++N   I+GAG DYA
Sbjct: 33  QRTLHPMVTTTSVLGVKFDGGVMLAADLAGYYGSLAKLRNCPRLLKVNDQIIVGAGGDYA 92

Query: 218 DFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG 277
           D+Q+L  ++ QK++ ++  NDGF LKPKSL+SWLTRV+YNRRS+FDPLW    V G+Q+G
Sbjct: 93  DYQFLKGVMDQKVISEECLNDGFKLKPKSLYSWLTRVMYNRRSKFDPLWNTYLVGGLQDG 152

Query: 278 EP 279
            P
Sbjct: 153 VP 154

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442759993|gb|JAA72155.1| Putative 20s proteasome regulatory subunit beta type psmb4/pre4 [Ixodes ricinus]

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/122 (54%), Positives = 95/122 (77%)

Query: 158 KQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYA 217
           ++ + P+ T TSVLG+ F+GGV+LAAD  GYYG++ +  +CPR++++N   I+GAG DYA
Sbjct: 33  QRTLHPMVTTTSVLGVKFDGGVMLAADLGGYYGTLAKLRNCPRLLKVNDQIIVGAGGDYA 92

Query: 218 DFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG 277
           D+Q+L  ++ QK++ ++  NDGF LKPKSL+SWLTRV+YNRRS+FDPLW    V G+Q+G
Sbjct: 93  DYQFLKGVMDQKVISEECLNDGFKLKPKSLYSWLTRVMYNRRSKFDPLWNTYLVGGLQDG 152

Query: 278 EP 279
            P
Sbjct: 153 VP 154

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443697819|gb|ELT98117.1| hypothetical protein CAPTEDRAFT_178772 [Capitella teleta]

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 65/116 (56%), Positives = 94/116 (81%)

Query: 164 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLN 223
           + TGTSVLG+ F+GG+I+AAD+ G YGS+ RF DCPR+M++N+ ++LGAG DYAD+Q+L 
Sbjct: 1   MVTGTSVLGVKFDGGIIIAADTLGSYGSLARFRDCPRVMKVNECSVLGAGGDYADYQHLK 60

Query: 224 DIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
            +++QK+LD+D  NDGF   PKSL +WLTR++Y++RS F+PLW    + G+Q+GEP
Sbjct: 61  AMIEQKVLDEDNLNDGFNYTPKSLFNWLTRIMYHKRSNFNPLWNTLVIGGLQDGEP 116

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|156542911|ref|XP_001601321.1| PREDICTED: proteasome subunit beta type-4-like [Nasonia vitripennis]

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 93/120 (77%)

Query: 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
           +++  +P+TTGTSV+GL F  G+++AAD    YGS+ RF +C R++++N   ILGAG DY
Sbjct: 40  MQRTQSPMTTGTSVIGLQFKDGIVIAADVLASYGSLARFRNCERVIKVNDNIILGAGGDY 99

Query: 217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
           AD+QYL  I++QKILD+   +DGF LKPKSLH WLTRV+YN+RS+FDPLW N  + G+++
Sbjct: 100 ADYQYLRSIIEQKILDERCLDDGFTLKPKSLHCWLTRVMYNKRSKFDPLWNNFIIGGIED 159

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427787451|gb|JAA59177.1| Putative 20s proteasome regulatory subunit beta type psmb4/pre4 [Rhipicephalus pulchellus]

 Score =  153 bits (386), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 65/117 (55%), Positives = 88/117 (75%)

Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
           P+TT TSVL   F+GGV+LAAD  G YGS+ RF +CPRI+++N   +  A  DYAD+QYL
Sbjct: 38  PMTTATSVLATKFDGGVMLAADILGSYGSLARFRNCPRILKVNDQIVAAASGDYADYQYL 97

Query: 223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
             ++ QK++ ++  NDGF LKPKSL+SWLTR++YNRRS+FDPLW    + G+Q+G P
Sbjct: 98  KSVIDQKMISEECLNDGFRLKPKSLYSWLTRIMYNRRSRFDPLWNTYLIGGLQDGVP 154

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357612754|gb|EHJ68152.1| hypothetical protein KGM_20431 [Danaus plexippus]

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/125 (55%), Positives = 93/125 (74%)

Query: 151 QYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL 210
           + + D      TP+TT T+V+GL F+ G ++AAD+ G YGS+ RF DCPR++++N   +L
Sbjct: 6   ETVADFKAHSATPITTTTTVIGLKFDKGCVIAADTLGSYGSLARFRDCPRVLKVNDLILL 65

Query: 211 GAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAF 270
           G+G DYAD+QYL DI++QKI+D+    DG  LKPKSLH WLTRVLYN+RS+ DPLW N  
Sbjct: 66  GSGGDYADYQYLKDIIEQKIIDEQCIGDGLNLKPKSLHCWLTRVLYNKRSKMDPLWSNYI 125

Query: 271 VAGMQ 275
           VAG+Q
Sbjct: 126 VAGIQ 130

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
ZFIN|ZDB-GENE-050417-333	256	psmb4 "proteasome (prosome, ma	0.437	0.476	0.532	2.2e-34
UNIPROTKB|P28024	242	psmb4 "Proteasome subunit beta	0.437	0.504	0.532	3.6e-34
UNIPROTKB|H9L0U6	258	PSMB4 "Proteasome subunit beta	0.422	0.457	0.525	1.2e-33
UNIPROTKB|Q3T108	264	PSMB4 "Proteasome subunit beta	0.487	0.515	0.474	6e-32
UNIPROTKB|F1ST02	264	PSMB4 "Proteasome subunit beta	0.473	0.5	0.481	9.8e-32
UNIPROTKB|P28070	264	PSMB4 "Proteasome subunit beta	0.473	0.5	0.473	2e-31
MGI|MGI:1098257	264	Psmb4 "proteasome (prosome, ma	0.415	0.439	0.508	5.4e-31
UNIPROTKB|E2RBR6	264	PSMB4 "Proteasome subunit beta	0.415	0.439	0.508	6.9e-31
RGD|61877	263	Psmb4 "proteasome (prosome, ma	0.415	0.441	0.5	3.8e-30
UNIPROTKB|P34067	263	Psmb4 "Proteasome subunit beta	0.415	0.441	0.5	3.8e-30

ZFIN|ZDB-GENE-050417-333 psmb4 "proteasome (prosome, macropain) subunit, beta type, 4" [Danio rerio (taxid:7955)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 65/122 (53%), Positives = 88/122 (72%)

Query:   157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
             +K  + P+ TGTSVLG+ F GGVI+AAD  G YGS+ RF +  R+M++N  TILGA  DY
Sbjct:    35 IKHTLNPMVTGTSVLGVKFKGGVIIAADMLGSYGSLARFRNISRLMKVNNSTILGASGDY 94

Query:   217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
             AD+QYL  I++Q ++D++L  DG    PK++HSWLTRV+YNRRS+ +PLW    + G  N
Sbjct:    95 ADYQYLKQIIEQMVIDEELLGDGHSYTPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFYN 154

Query:   277 GE 278
             GE
Sbjct:   155 GE 156

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|P28024 psmb4 "Proteasome subunit beta type-4" [Xenopus laevis (taxid:8355)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 65/122 (53%), Positives = 89/122 (72%)

Query:   157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
             V+  + P+ TGTSVLG+ F+GGVI+AAD  G YGS+ RF +  RIM++N+ TILGA  DY
Sbjct:    21 VRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGDY 80

Query:   217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
             AD+QYL  ++ Q ++D++L  DG    PK++HSWLTRV+YNRRS+ +PLW    + G  N
Sbjct:    81 ADYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFYN 140

Query:   277 GE 278
             GE
Sbjct:   141 GE 142

GO:0005839 "proteasome core complex" evidence=ISS

UNIPROTKB|H9L0U6 PSMB4 "Proteasome subunit beta type" [Gallus gallus (taxid:9031)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 62/118 (52%), Positives = 85/118 (72%)

Query:   161 ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQ 220
             +TP+ TGTSVLG+ F GG+++AAD  G YGS+ RF    R++++N  T+LGA  DYADFQ
Sbjct:    41 LTPMVTGTSVLGVKFEGGIVIAADMMGSYGSLARFRSISRLLRVNDSTVLGASGDYADFQ 100

Query:   221 YLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
             YL  I+ Q ++D++L  DG    PK++HSWLTRV+YNRRS+ +PLW    + G  NGE
Sbjct:   101 YLTQIINQMVIDEELLGDGHSYSPKAIHSWLTRVMYNRRSKINPLWNTVVIGGFYNGE 158

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IEA

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

UNIPROTKB|Q3T108 PSMB4 "Proteasome subunit beta type-4" [Bos taurus (taxid:9913)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 65/137 (47%), Positives = 91/137 (66%)

Query:   142 GAGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRI 201
             G+  D     Y + I + +  P+ TGTSVLGL F GGV++AAD  G YGS+ RF +  RI
Sbjct:    29 GSSVDPVSALYGSPITRTQ-NPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRI 87

Query:   202 MQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQ 261
             M++N  T+LGA  DYADFQYL  ++ Q ++D++L  DG    PK++HSWLTR +Y+RRS+
Sbjct:    88 MRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSK 147

Query:   262 FDPLWINAFVAGMQNGE 278
              +PLW    + G  +GE
Sbjct:   148 MNPLWNTMVIGGYADGE 164

GO:0005839 "proteasome core complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|F1ST02 PSMB4 "Proteasome subunit beta type" [Sus scrofa (taxid:9823)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 64/133 (48%), Positives = 90/133 (67%)

Query:   146 DYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN 205
             D A   Y + I + +  P+ TGTSVLG+ F GGV++AAD  G YGS+ RF +  RIM++N
Sbjct:    33 DPASVLYGSPITRTQ-NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVN 91

Query:   206 KFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPL 265
               T+LGA  DYADFQYL  ++ Q ++D++L  DG    PK++HSWLTR +Y+RRS+ +PL
Sbjct:    92 NSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPL 151

Query:   266 WINAFVAGMQNGE 278
             W    + G  +GE
Sbjct:   152 WNTMVIGGYADGE 164

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|P28070 PSMB4 "Proteasome subunit beta type-4" [Homo sapiens (taxid:9606)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 63/133 (47%), Positives = 89/133 (66%)

Query:   146 DYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN 205
             D A   Y   I + +  P+ TGTSVLG+ F GGV++AAD  G YGS+ RF +  RIM++N
Sbjct:    33 DPASALYRGPITRTQ-NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVN 91

Query:   206 KFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPL 265
               T+LGA  DYADFQYL  ++ Q ++D++L  DG    P+++HSWLTR +Y+RRS+ +PL
Sbjct:    92 NSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPL 151

Query:   266 WINAFVAGMQNGE 278
             W    + G  +GE
Sbjct:   152 WNTMVIGGYADGE 164

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IEA

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IEA

GO:0005634 "nucleus" evidence=TAS

GO:0005839 "proteasome core complex" evidence=ISS

GO:0000502 "proteasome complex" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

MGI|MGI:1098257 Psmb4 "proteasome (prosome, macropain) subunit, beta type 4" [Mus musculus (taxid:10090)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 59/116 (50%), Positives = 84/116 (72%)

Query:   163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
             P+ TGTSVLG+ F+GGV++AAD  G YGS+ RF +  RIM++N  T+LGA  DYADFQYL
Sbjct:    49 PMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 108

Query:   223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
               ++ Q ++D++L  DG    P+++HSWLTR +Y+RRS+ +PLW    + G  +GE
Sbjct:   109 KQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGE 164

GO:0000502 "proteasome complex" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IDA

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IMP

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|E2RBR6 PSMB4 "Proteasome subunit beta type" [Canis lupus familiaris (taxid:9615)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 59/116 (50%), Positives = 83/116 (71%)

Query:   163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
             P+ TGTSVLG+ F GGV++AAD  G YGS+ RF +  RIM++N  T+LGA  DYADFQYL
Sbjct:    49 PMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 108

Query:   223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
               ++ Q ++D++L  DG    P+++HSWLTR +Y+RRS+ +PLW    + G  +GE
Sbjct:   109 KQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGE 164

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

RGD|61877 Psmb4 "proteasome (prosome, macropain) subunit, beta type 4" [Rattus norvegicus (taxid:10116)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 58/116 (50%), Positives = 82/116 (70%)

Query:   163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
             P+ TGTSVLG+ F+ GV++AAD  G YGS+ RF +  RIM++N  T+LGA  DYADFQYL
Sbjct:    48 PMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 107

Query:   223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
               ++ Q ++D++L  DG    P+++HSWLTR +Y+RRS+ +PLW    + G   GE
Sbjct:   108 KQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIGGYAGGE 163

GO:0001530 "lipopolysaccharide binding" evidence=IEA;ISO

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IEA;ISO

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA;ISO;ISS

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|P34067 Psmb4 "Proteasome subunit beta type-4" [Rattus norvegicus (taxid:10116)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 58/116 (50%), Positives = 82/116 (70%)

Query:   163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
             P+ TGTSVLG+ F+ GV++AAD  G YGS+ RF +  RIM++N  T+LGA  DYADFQYL
Sbjct:    48 PMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 107

Query:   223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
               ++ Q ++D++L  DG    P+++HSWLTR +Y+RRS+ +PLW    + G   GE
Sbjct:   108 KQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIGGYAGGE 163

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.25.1	LOW CONFIDENCE prediction!
3rd Layer	3.4.25	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	279
cd03760	197	cd03760, proteasome_beta_type_4, proteasome beta t	2e-54
cd01912	189	cd01912, proteasome_beta, proteasome beta subunit	1e-26
cd03760	197	cd03760, proteasome_beta_type_4, proteasome beta t	3e-26
cd03760	197	cd03760, proteasome_beta_type_4, proteasome beta t	3e-25
cd01906	182	cd01906, proteasome_protease_HslV, proteasome_prot	9e-19
cd01912	189	cd01912, proteasome_beta, proteasome beta subunit	6e-15
cd01912	189	cd01912, proteasome_beta, proteasome beta subunit	1e-12
COG0638	236	COG0638, PRE1, 20S proteasome, alpha and beta subu	2e-11
cd01901	164	cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term	2e-11
pfam00227	188	pfam00227, Proteasome, Proteasome subunit	2e-10
cd01906	182	cd01906, proteasome_protease_HslV, proteasome_prot	4e-10
pfam00227	188	pfam00227, Proteasome, Proteasome subunit	2e-09
cd01906	182	cd01906, proteasome_protease_HslV, proteasome_prot	1e-08
COG0638	236	COG0638, PRE1, 20S proteasome, alpha and beta subu	2e-07
pfam00227	188	pfam00227, Proteasome, Proteasome subunit	1e-06
cd01901	164	cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term	2e-05
COG0638	236	COG0638, PRE1, 20S proteasome, alpha and beta subu	4e-05
cd03758	193	cd03758, proteasome_beta_type_2, proteasome beta t	5e-04
TIGR03634	185	TIGR03634, arc_protsome_B, proteasome endopeptidas	0.001
TIGR03634	185	TIGR03634, arc_protsome_B, proteasome endopeptidas	0.001
cd03764	188	cd03764, proteasome_beta_archeal, Archeal proteaso	0.004
PTZ00488	247	PTZ00488, PTZ00488, Proteasome subunit beta type-5	0.004

>gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit

 Score =  174 bits (444), Expect = 2e-54
 Identities = 60/115 (52%), Positives = 81/115 (70%), Gaps = 1/115 (0%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
           TGTSV+ + +  GVI+AAD+ G YGS+ RF +  RI ++   T+LGA  DYADFQYL  +
Sbjct: 1   TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRL 60

Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP 279
           + Q ++DD+  +DG  L PK +HS+LTRVLYNRRS+ +PLW    V G+ N GEP
Sbjct: 61  LDQLVIDDECLDDGHSLSPKEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEP 115

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 197

>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit

 Score =  102 bits (257), Expect = 1e-26
 Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 3/111 (2%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
           T+++G+    GV+LAAD+    GS++   +  +I +I+   +LG     AD Q L  ++K
Sbjct: 1   TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLK 60

Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
           + +   +L N    L  K+  + L+ +LY+ R    P +++  V G+  G 
Sbjct: 61  RNLRLYELRNGRE-LSVKAAANLLSNILYSYR--GFPYYVSLIVGGVDKGG 108

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit

 Score =  101 bits (254), Expect = 3e-26
 Identities = 32/66 (48%), Positives = 45/66 (68%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
           TGTSV+ + +  GVI+AAD+ G YGS+ RF +  RI ++   T+LGA  DYADFQYL  +
Sbjct: 1   TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRL 60

Query: 157 VKQKIT 162
           + Q + 
Sbjct: 61  LDQLVI 66

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 197

>gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit

 Score = 99.2 bits (248), Expect = 3e-25
 Identities = 39/66 (59%), Positives = 50/66 (75%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
           FLG VD LGTAYED  ++ GFG ++A+PLLR+  EK P +++EEA ALI+ CM +LY RD
Sbjct: 116 FLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEARALIEECMKVLYYRD 175

Query: 61  ARSGAK 66
           ARS  K
Sbjct: 176 ARSINK 181

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 197

>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV

 Score = 81.4 bits (202), Expect = 9e-19
 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 1/111 (0%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
           T+++G+    GV+LAAD     G ++  +   +I +I+           AD Q L + ++
Sbjct: 1   TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLR 60

Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
           ++         G  +  ++L   L  +LY       PL ++  VAG+    
Sbjct: 61  KE-AQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEG 110

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182

>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit

 Score = 70.9 bits (175), Expect = 6e-15
 Identities = 19/63 (30%), Positives = 36/63 (57%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
           T+++G+    GV+LAAD+    GS++   +  +I +I+   +LG     AD Q L  ++K
Sbjct: 1   TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLK 60

Query: 159 QKI 161
           + +
Sbjct: 61  RNL 63

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit

 Score = 64.8 bits (159), Expect = 1e-12
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
           FL  VD LG+  E   ++ G G+  A  +L +  + +  M+ EEA+ L+K  +D    RD
Sbjct: 111 FLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPD--MTLEEAVELVKKAIDSAIERD 168

Query: 61  ARSG 64
             SG
Sbjct: 169 LSSG 172

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 1/114 (0%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            GT+ +G+    GV+LAAD     G ++  ++  +I +I+    +      AD Q L   
Sbjct: 29  GGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRY 88

Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
            + +         G  +  ++L   L+ +L        P  ++  VAG+ +G P
Sbjct: 89  ARAEAQ-LYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGP 141

Length = 236

>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 2/112 (1%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
           ++ + +   GGV+LAAD     G  +  +   +I +       G     AD Q L   ++
Sbjct: 1   STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLR 60

Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
           +  L       G  +   +L   L ++L     Q  P  +N  VAG+  G  
Sbjct: 61  EA-LQLYRLRYGEPISVVALAKELAKLLQVYT-QGRPFGVNLIVAGVDEGGG 110

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either the nucleophilic hydroxyl in a Ser or Thr residue or the nucleophilic thiol in a Cys residue. The position of the N-terminal nucleophile in the active site and the mechanism of catalysis are conserved in this family, despite considerable variation in the protein sequences. Length = 164

>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 4/117 (3%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRF-NDCPRIMQINKFTILGAGNDYADFQYLND 224
           TGT+++G+    GV+LAAD     GS +   +   +I +I+    +      AD Q L D
Sbjct: 3   TGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADAQTLVD 62

Query: 225 IVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYN-RRSQFDPLWINAFVAGM-QNGEP 279
             + +         G  +  +       ++    + S   P  ++  +AG  ++G P
Sbjct: 63  YARAE-AQLYRLRYGRPISVELAKRIADKLQAYTQYSGRRPYGVSLLIAGYDEDGGP 118

The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188

>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV

 Score = 57.1 bits (139), Expect = 4e-10
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
           T+++G+    GV+LAAD     G ++  +   +I +I+           AD Q L + ++
Sbjct: 1   TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLR 60

Query: 159 QKI 161
           ++ 
Sbjct: 61  KEA 63

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182

>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRF-NDCPRIMQINKFTILGAGNDYADFQYLND 155
           TGT+++G+    GV+LAAD     GS +   +   +I +I+    +      AD Q L D
Sbjct: 3   TGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADAQTLVD 62

Query: 156 IVKQKI 161
             + + 
Sbjct: 63  YARAEA 68

The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188

>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
            L +VD  G+  E K  + G G+  A+ +L +  + +  M+ EEAI L    +     RD
Sbjct: 113 QLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPD--MTLEEAIELALKALKSALERD 170

Query: 61  ARSG 64
             SG
Sbjct: 171 LYSG 174

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182

>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
            GT+ +G+    GV+LAAD     G ++  ++  +I +I+    +      AD Q L   
Sbjct: 29  GGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRY 88

Query: 157 VKQKIT 162
            + +  
Sbjct: 89  ARAEAQ 94

Length = 236

>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
            L ++D  G+  E K  + G G+  A   L  E    P M+ EEA+ L    +     RD
Sbjct: 119 HLYSIDPSGSVIEYKATAIGSGSQYAYGFL--EKLYKPDMTLEEAVELAVKALKEAIERD 176

Query: 61  ARSG 64
           A SG
Sbjct: 177 ALSG 180

The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188

>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
           ++ + +   GGV+LAAD     G  +  +   +I +       G     AD Q L   ++
Sbjct: 1   STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLR 60

Query: 159 QKI 161
           + +
Sbjct: 61  EAL 63

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either the nucleophilic hydroxyl in a Ser or Thr residue or the nucleophilic thiol in a Cys residue. The position of the N-terminal nucleophile in the active site and the mechanism of catalysis are conserved in this family, despite considerable variation in the protein sequences. Length = 164

>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 5   VDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARSG 64
            D  G+  E K  + G G+  A   L +E  ++  +S EEAI L    +     RDA SG
Sbjct: 146 TDPSGSYNEYKATAIGSGSQFAYGFLEKEYRED--LSLEEAIELAVKALRAAIERDAASG 203

Query: 65  AKN 67
              
Sbjct: 204 GGI 206

Length = 236

>gnl|CDD|239727 cd03758, proteasome_beta_type_2, proteasome beta type-2 subunit

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVR 59
            L  +D LGT  +    + G+G +  + +L  +    P M+ EEA+ L+K C+  L  R
Sbjct: 114 SLYYIDYLGTLVKVPYAAHGYGAYFCLSIL--DRYYKPDMTVEEALELMKKCIKELKKR 170

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 193

>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 98  GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN-KFTILGAGNDYADFQYLNDI 156
           GT+ +G+    GV+LAAD     G+ +   +  ++ QI+    +  AG    D Q L  I
Sbjct: 1   GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAG-SVGDAQSLVRI 59

Query: 157 VK 158
           +K
Sbjct: 60  LK 61

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 185

>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN-KFTILGAGNDYADFQYLNDI 225
           GT+ +G+    GV+LAAD     G+ +   +  ++ QI+    +  AG    D Q L  I
Sbjct: 1   GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAG-SVGDAQSLVRI 59

Query: 226 VK 227
           +K
Sbjct: 60  LK 61

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 185

>gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 10/67 (14%)

Query: 2   LGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIAL----IKTCMDLLY 57
           L ++D LG+  EDK  + G G+  A  +L  E E    M+ EEA  L    IK+ ++   
Sbjct: 111 LYSLDPLGSIIEDKYTATGSGSPYAYGVL--EDEYKEDMTVEEAKKLAIRAIKSAIE--- 165

Query: 58  VRDARSG 64
            RD+ SG
Sbjct: 166 -RDSASG 171

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|185666 PTZ00488, PTZ00488, Proteasome subunit beta type-5; Provisional

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 78  PNVLPHYFRRSGSFSTP-------LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCP 130
           P   P  F    +F             GT+ L   + GG+I+A DS    G  +      
Sbjct: 12  PGAHPGDFLAEYTFDHGDANKAIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVK 71

Query: 131 RIMQINKFTILG 142
           ++++IN  T+LG
Sbjct: 72  KVIEINP-TLLG 82

Length = 247

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
KOG0175|consensus	285		99.94
PTZ00488	247	Proteasome subunit beta type-5; Provisional	99.93
COG0638	236	PRE1 20S proteasome, alpha and beta subunits [Post	99.91
cd03757	212	proteasome_beta_type_1 proteasome beta type-1 subu	99.9
KOG0185|consensus	256		99.9
cd03760	197	proteasome_beta_type_4 proteasome beta type-4 subu	99.9
cd03761	188	proteasome_beta_type_5 proteasome beta type-5 subu	99.9
cd03759	195	proteasome_beta_type_3 proteasome beta type-3 subu	99.89
cd03750	227	proteasome_alpha_type_2 proteasome_alpha_type_2. T	99.89
TIGR03634	185	arc_protsome_B proteasome endopeptidase complex, a	99.89
KOG0185|consensus	256		99.88
cd03752	213	proteasome_alpha_type_4 proteasome_alpha_type_4. T	99.88
PRK05456	172	ATP-dependent protease subunit HslV; Provisional	99.88
cd03751	212	proteasome_alpha_type_3 proteasome_alpha_type_3. T	99.88
cd03763	189	proteasome_beta_type_7 proteasome beta type-7 subu	99.88
cd03758	193	proteasome_beta_type_2 proteasome beta type-2 subu	99.88
cd03762	188	proteasome_beta_type_6 proteasome beta type-6 subu	99.88
TIGR03690	219	20S_bact_beta proteasome, beta subunit, bacterial	99.88
cd03764	188	proteasome_beta_archeal Archeal proteasome, beta s	99.87
PTZ00246	253	proteasome subunit alpha; Provisional	99.87
cd03756	211	proteasome_alpha_archeal proteasome_alpha_archeal.	99.87
cd01911	209	proteasome_alpha proteasome alpha subunit. The 20S	99.87
KOG0174|consensus	224		99.87
cd03755	207	proteasome_alpha_type_7 proteasome_alpha_type_7. T	99.87
KOG0179|consensus	235		99.87
TIGR03633	224	arc_protsome_A proteasome endopeptidase complex, a	99.87
KOG0177|consensus	200		99.86
PF00227	190	Proteasome: Proteasome subunit; InterPro: IPR00135	99.86
cd01913	171	protease_HslV Protease HslV and the ATPase/chapero	99.86
cd03749	211	proteasome_alpha_type_1 proteasome_alpha_type_1. T	99.85
cd03753	213	proteasome_alpha_type_5 proteasome_alpha_type_5. T	99.85
TIGR03692	171	ATP_dep_HslV ATP-dependent protease HslVU, peptida	99.85
PRK03996	241	proteasome subunit alpha; Provisional	99.85
KOG0173|consensus	271		99.84
cd01912	189	proteasome_beta proteasome beta subunit. The 20S p	99.84
cd03754	215	proteasome_alpha_type_6 proteasome_alpha_type_6. T	99.84
cd03760	197	proteasome_beta_type_4 proteasome beta type-4 subu	99.82
cd01906	182	proteasome_protease_HslV proteasome_protease_HslV.	99.82
TIGR03691	228	20S_bact_alpha proteasome, alpha subunit, bacteria	99.81
cd03750	227	proteasome_alpha_type_2 proteasome_alpha_type_2. T	99.8
cd03759	195	proteasome_beta_type_3 proteasome beta type-3 subu	99.8
KOG0176|consensus	241		99.8
cd03757	212	proteasome_beta_type_1 proteasome beta type-1 subu	99.79
cd03761	188	proteasome_beta_type_5 proteasome beta type-5 subu	99.79
TIGR03634	185	arc_protsome_B proteasome endopeptidase complex, a	99.79
cd03751	212	proteasome_alpha_type_3 proteasome_alpha_type_3. T	99.78
PTZ00488	247	Proteasome subunit beta type-5; Provisional	99.78
cd03755	207	proteasome_alpha_type_7 proteasome_alpha_type_7. T	99.78
cd03765	236	proteasome_beta_bacterial Bacterial proteasome, be	99.78
cd03764	188	proteasome_beta_archeal Archeal proteasome, beta s	99.78
COG0638	236	PRE1 20S proteasome, alpha and beta subunits [Post	99.77
cd03756	211	proteasome_alpha_archeal proteasome_alpha_archeal.	99.77
TIGR03633	224	arc_protsome_A proteasome endopeptidase complex, a	99.77
cd03758	193	proteasome_beta_type_2 proteasome beta type-2 subu	99.76
cd01911	209	proteasome_alpha proteasome alpha subunit. The 20S	99.75
PRK03996	241	proteasome subunit alpha; Provisional	99.75
cd03762	188	proteasome_beta_type_6 proteasome beta type-6 subu	99.75
TIGR03690	219	20S_bact_beta proteasome, beta subunit, bacterial	99.74
cd03754	215	proteasome_alpha_type_6 proteasome_alpha_type_6. T	99.74
KOG0180|consensus	204		99.74
cd03752	213	proteasome_alpha_type_4 proteasome_alpha_type_4. T	99.74
cd03749	211	proteasome_alpha_type_1 proteasome_alpha_type_1. T	99.74
KOG0179|consensus	235		99.73
cd03763	189	proteasome_beta_type_7 proteasome beta type-7 subu	99.73
cd03753	213	proteasome_alpha_type_5 proteasome_alpha_type_5. T	99.73
PTZ00246	253	proteasome subunit alpha; Provisional	99.72
cd01912	189	proteasome_beta proteasome beta subunit. The 20S p	99.71
cd01906	182	proteasome_protease_HslV proteasome_protease_HslV.	99.69
PF00227	190	Proteasome: Proteasome subunit; InterPro: IPR00135	99.67
KOG0174|consensus	224		99.65
KOG0177|consensus	200		99.63
KOG0176|consensus	241		99.61
KOG0184|consensus	254		99.61
KOG0175|consensus	285		99.58
cd03765	236	proteasome_beta_bacterial Bacterial proteasome, be	99.57
KOG0184|consensus	254		99.57
KOG0178|consensus	249		99.56
KOG0181|consensus	233		99.54
TIGR03691	228	20S_bact_alpha proteasome, alpha subunit, bacteria	99.52
KOG0183|consensus	249		99.52
cd01901	164	Ntn_hydrolase The Ntn hydrolases (N-terminal nucle	99.51
KOG0180|consensus	204		99.47
KOG0178|consensus	249		99.45
KOG0183|consensus	249		99.41
cd01901	164	Ntn_hydrolase The Ntn hydrolases (N-terminal nucle	99.4
KOG0181|consensus	233		99.37
PRK05456	172	ATP-dependent protease subunit HslV; Provisional	99.34
cd01913	171	protease_HslV Protease HslV and the ATPase/chapero	99.34
TIGR03692	171	ATP_dep_HslV ATP-dependent protease HslVU, peptida	99.32
KOG0173|consensus	271		99.26
KOG0182|consensus	246		99.21
KOG0182|consensus	246		99.14
KOG0863|consensus	264		99.09
KOG0863|consensus	264		99.04
COG5405	178	HslV ATP-dependent protease HslVU (ClpYQ), peptida	98.31
COG5405	178	HslV ATP-dependent protease HslVU (ClpYQ), peptida	96.32

>KOG0175|consensus

Probab=99.94  E-value=5.2e-28  Score=208.32  Aligned_cols=172  Identities=19%  Similarity=0.259  Sum_probs=141.7

Q ss_pred             CCCCCCeeecCCCCCCCcc-c-cCC--CcCc--CccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceE
Q psy9489          67 NGPSLGKYHDFPNVLPHYF-R-RSG--SFST--PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTI  140 (279)
Q Consensus        67 ~g~~~~~f~~~~~~~~~~~-~-~~~--~~~~--~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~  140 (279)
                      +..+|  +..||+.+|.+| + ...  ....  .+.+|||+||++|++|||+|+|+|+|.|++|.++.++||..||++++
T Consensus        36 ~f~~~--~~~P~~~~p~~~l~~~~~~~~~~~~i~~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylL  113 (285)
T KOG0175|consen   36 RFANP--LALPPGESPQTFLFAITDDETAGVLIKFAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLL  113 (285)
T ss_pred             cccCc--ccCCCCCCchhhhhhccCCCcccceeeecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhh
Confidence            33555  888999999888 2 221  1111  24599999999999999999999999999999999999999999999


Q ss_pred             eeecCcccccccchhhhhc--------cccccc---------------------ceeeEEEEEeCCcEEEEEcCCCccCc
Q psy9489         141 LGAGNDYADFQYLNDIVKQ--------KITPLT---------------------TGTSVLGLVFNGGVILAADSAGYYGS  191 (279)
Q Consensus       141 ~~~sG~~aD~~~l~~~l~~--------~~~pi~---------------------~g~tvlgi~~~~gvlia~D~~gs~g~  191 (279)
                      .++||.+||||+|.+.+.+        +.+.++                     .|+.+.|.+-+++-|+.+|.-|+-  
T Consensus       114 GTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~YkGmGLsmGtMi~G~Dk~GP~lyYVDseG~R--  191 (285)
T KOG0175|consen  114 GTMAGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQYKGMGLSMGTMIAGWDKKGPGLYYVDSEGTR--  191 (285)
T ss_pred             hcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhccCcchhheeeEeeccCCCCceEEEcCCCCE--
Confidence            9999999999999999885        122222                     334444555556666666666643  


Q ss_pred             eeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         192 MMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       192 li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                                  +..+++.+|||+    .+++++|++.|+++|+.+|+.+|..++|+++.+|+.||.
T Consensus       192 ------------l~G~~FSVGSGs----~yAYGVLDsgYr~dls~eEA~~L~rrAI~hAThRDaySG  242 (285)
T KOG0175|consen  192 ------------LSGDLFSVGSGS----TYAYGVLDSGYRYDLSDEEAYDLARRAIYHATHRDAYSG  242 (285)
T ss_pred             ------------ecCceEeecCCC----ceeEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccccC
Confidence                        677899999999    999999999999999999999999999999999999975

>PTZ00488 Proteasome subunit beta type-5; Provisional

Probab=99.93  E-value=1.1e-25  Score=200.17  Aligned_cols=172  Identities=17%  Similarity=0.236  Sum_probs=145.0

Q ss_pred             CCCeeecCCCCCCCcc------c-cCCCcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEee
Q psy9489          70 SLGKYHDFPNVLPHYF------R-RSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG  142 (279)
Q Consensus        70 ~~~~f~~~~~~~~~~~------~-~~~~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~  142 (279)
                      +|-.|..||+..|..|      . +-....-++.+|+|+|||+++||||||+|+|.+.++++.+++.+||++|++|++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~   83 (247)
T PTZ00488          4 GPEHFEHPPGAHPGDFLAEYTFDHGDANKAIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGT   83 (247)
T ss_pred             CccccccCCCCCHHHHHHHhhhccccCCcccccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEE
Confidence            5677888998888665      1 11122237889999999999999999999999999999999999999999999999


Q ss_pred             ecCcccccccchhhhhccc---------------------------cc--ccceeeEEEEEeCCcEEEEEcCCCccCcee
Q psy9489         143 AGNDYADFQYLNDIVKQKI---------------------------TP--LTTGTSVLGLVFNGGVILAADSAGYYGSMM  193 (279)
Q Consensus       143 ~sG~~aD~~~l~~~l~~~~---------------------------~p--i~~g~tvlgi~~~~gvlia~D~~gs~g~li  193 (279)
                      .+|+.+|++.+.+.++.+.                           +|  +..+..+.|++.+++-++.+|+.|++    
T Consensus        84 ~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~----  159 (247)
T PTZ00488         84 MAGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNYKGMGLSMGTMICGWDKKGPGLFYVDNDGTR----  159 (247)
T ss_pred             eCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCCCEEEEEcCCcce----
Confidence            9999999999999998621                           11  11122334888778899999999987    


Q ss_pred             eecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         194 RFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       194 ~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                                ...++.+.|+|+    ..+..+|++.|+++|+.+|+.++..+++.+++.|+.++..
T Consensus       160 ----------~~~~~~a~G~gs----~~~~~~Le~~~k~dms~eEai~l~~kal~~~~~Rd~~sg~  211 (247)
T PTZ00488        160 ----------LHGNMFSCGSGS----TYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGG  211 (247)
T ss_pred             ----------eecCCEEEccCH----HHHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHhccccCC
Confidence                      667889999999    9999999999999999999999999999999999987754

>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.1e-24  Score=191.00  Aligned_cols=151  Identities=19%  Similarity=0.228  Sum_probs=131.9

Q ss_pred             cCcCcc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhc----------
Q psy9489          91 FSTPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ----------  159 (279)
Q Consensus        91 ~~~~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~----------  159 (279)
                      +.+++. +|+|+|||+++||||||+|+|.+.+.++.+++++||++|+||+++++||+.+|+|.|++.++.          
T Consensus        22 a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~  101 (236)
T COG0638          22 ALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYG  101 (236)
T ss_pred             HHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhC
Confidence            355666 569999999999999999999999999999999999999999999999999999999999984          


Q ss_pred             -------------------cc--ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhh
Q psy9489         160 -------------------KI--TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYAD  218 (279)
Q Consensus       160 -------------------~~--~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD  218 (279)
                                         ..  .|+..+..+.|++..++.|+..|+.|++              ...++.++|+|+   
T Consensus       102 ~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~--------------~~~~~~a~Gsgs---  164 (236)
T COG0638         102 EPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYSTDPSGSY--------------NEYKATAIGSGS---  164 (236)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcCCCCeEEEECCCCce--------------eecCEEEEcCCc---
Confidence                               01  2433344444776656799999999988              677899999999   


Q ss_pred             HHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         219 FQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       219 ~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                       +.++..|+++|+++|+.+|+.++.+++|.+++.|+..+..
T Consensus       165 -~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~  204 (236)
T COG0638         165 -QFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGG  204 (236)
T ss_pred             -HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCC
Confidence             9999999999999999999999999999999999887653

>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit

Probab=99.90  E-value=7.6e-24  Score=184.64  Aligned_cols=150  Identities=21%  Similarity=0.281  Sum_probs=128.8

Q ss_pred             CcCcc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------
Q psy9489          92 STPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI---------  161 (279)
Q Consensus        92 ~~~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~---------  161 (279)
                      |+|+. +|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|+|.+.+.++.+.         
T Consensus         1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~   80 (212)
T cd03757           1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNK   80 (212)
T ss_pred             CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCC
Confidence            45776 99999999999999999999999999999999999999999999999999999999999988511         


Q ss_pred             ------------------c--cccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHH
Q psy9489         162 ------------------T--PLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQ  220 (279)
Q Consensus       162 ------------------~--pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~  220 (279)
                                        +  |......+.|++.+ ++.|+.+|+.|++              ...++++.|+|+    +
T Consensus        81 ~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~--------------~~~~~~a~G~g~----~  142 (212)
T cd03757          81 EMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSY--------------ERETYSAGGSAS----S  142 (212)
T ss_pred             CCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCe--------------eecCEEEEeecH----H
Confidence                              1  32222233378754 4789999999987              677899999999    9


Q ss_pred             HHHHHHHhhcc---------cccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         221 YLNDIVKQKIL---------DDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       221 ~l~~~l~~~~~---------~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      .+..+||+.|+         ++|+.+|+.++..+++...+.|+..+..
T Consensus       143 ~~~~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~  190 (212)
T cd03757         143 LIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGD  190 (212)
T ss_pred             HHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCC
Confidence            99999999985         7899999999999999999999887653

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0185|consensus

Probab=99.90  E-value=5.2e-24  Score=181.55  Aligned_cols=118  Identities=45%  Similarity=0.865  Sum_probs=114.2

Q ss_pred             ccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccC
Q psy9489         160 KITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDG  239 (279)
Q Consensus       160 ~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~  239 (279)
                      .+.|+.+|+++|+++|++|||+++|..+|||++.++++++|+++++++..+++||..+|+|++.+.|+....++..++++
T Consensus        34 t~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg  113 (256)
T KOG0185|consen   34 TLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDG  113 (256)
T ss_pred             ccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccc
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999888889999


Q ss_pred             CCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCC
Q psy9489         240 FVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG  277 (279)
Q Consensus       240 ~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~  277 (279)
                      ..+.+++|++++.|.||++|++++|+|.++++||+|++
T Consensus       114 ~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~  151 (256)
T KOG0185|consen  114 QSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNT  151 (256)
T ss_pred             cccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCC
Confidence            99999999999999999999999999999999999973

>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit

Probab=99.90  E-value=1.3e-23  Score=181.07  Aligned_cols=145  Identities=28%  Similarity=0.394  Sum_probs=126.8

Q ss_pred             CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------------
Q psy9489          97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI---------------  161 (279)
Q Consensus        97 ~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~---------------  161 (279)
                      +|+|+|||+++||||||||+|.+.++++.+++.+||++|+++++++.+|..+|++.+.+.++.+.               
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~   80 (197)
T cd03760           1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK   80 (197)
T ss_pred             CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence            69999999999999999999998899999999999999999999999999999999999887411               


Q ss_pred             -----------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHH
Q psy9489         162 -----------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLN  223 (279)
Q Consensus       162 -----------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~  223 (279)
                                       +|......+.|++. .++.|+..|+.|++              ...++.+.|+|+    +++.
T Consensus        81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~--------------~~~~~~a~G~g~----~~~~  142 (197)
T cd03760          81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTA--------------YEDPHVATGFGA----YLAL  142 (197)
T ss_pred             HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccE--------------EECCEeEEccHH----HHHH
Confidence                             12222233348875 56899999999987              677899999999    9999


Q ss_pred             HHHHhhccc--ccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         224 DIVKQKILD--DDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       224 ~~l~~~~~~--~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      .+|++.|++  +|+.+|+.++..+++...+.|+..+..
T Consensus       143 ~~Le~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~  180 (197)
T cd03760         143 PLLREAWEKKPDLTEEEARALIEECMKVLYYRDARSIN  180 (197)
T ss_pred             HHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCC
Confidence            999999999  999999999999999999999887654

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit

Probab=99.90  E-value=2.2e-23  Score=178.44  Aligned_cols=143  Identities=20%  Similarity=0.284  Sum_probs=125.4

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------cccc-----
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TPLT-----  165 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~pi~-----  165 (279)
                      +|+|||+++||||||+|+|.+.++++.+++.+||++|++|++++.+|+.+|+|.+.+.++.+.        ++++     
T Consensus         1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la   80 (188)
T cd03761           1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS   80 (188)
T ss_pred             CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999998521        1111     


Q ss_pred             --------------ceee--EEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhh
Q psy9489         166 --------------TGTS--VLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK  229 (279)
Q Consensus       166 --------------~g~t--vlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~  229 (279)
                                    .+.+  +.|++.+++.++..|+.|++              ...++.+.|+|+    +.+..+||+.
T Consensus        81 ~~ls~~l~~~~~~~~~v~~li~G~D~~g~~L~~~dp~G~~--------------~~~~~~a~G~g~----~~~~~~Le~~  142 (188)
T cd03761          81 KLLSNMLYQYKGMGLSMGTMICGWDKTGPGLYYVDSDGTR--------------LKGDLFSVGSGS----TYAYGVLDSG  142 (188)
T ss_pred             HHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEEcCCceE--------------EEcCeEEEcccH----HHHHHHHHhc
Confidence                          2222  33788667899999999987              677899999999    9999999999


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       230 ~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      |+++|+.+|+.++..+++...+.|+..+..
T Consensus       143 ~~~~~s~eea~~l~~~~l~~~~~rd~~sg~  172 (188)
T cd03761         143 YRYDLSVEEAYDLARRAIYHATHRDAYSGG  172 (188)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence            999999999999999999999999887653

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit

Probab=99.89  E-value=3.5e-23  Score=178.20  Aligned_cols=146  Identities=17%  Similarity=0.133  Sum_probs=123.4

Q ss_pred             CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------------
Q psy9489          97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI---------------  161 (279)
Q Consensus        97 ~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~---------------  161 (279)
                      +|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|+|.+.+.++...               
T Consensus         2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~   81 (195)
T cd03759           2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT   81 (195)
T ss_pred             CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            69999999999999999999998888888889999999999999999999999999999998511               


Q ss_pred             --------------ccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHH
Q psy9489         162 --------------TPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV  226 (279)
Q Consensus       162 --------------~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l  226 (279)
                                    .|...+..+.|++.+ ++.|+.+|+.|++.             ....+.+.|+|+    +.+..+|
T Consensus        82 la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~-------------~~~~~~a~G~g~----~~~~~~L  144 (195)
T cd03759          82 FSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPS-------------IPSDFVVSGTAS----EQLYGMC  144 (195)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCccc-------------ccCCEEEEcccH----HHHHHHH
Confidence                          122222233378744 58999999999861             223488999999    9999999


Q ss_pred             HhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       227 ~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      |++|+++|+.+|+.++..+++.....|+..+..
T Consensus       145 e~~~~~~~s~~ea~~l~~~~l~~~~~rd~~~~~  177 (195)
T cd03759         145 ESLWRPDMEPDELFETISQALLSAVDRDALSGW  177 (195)
T ss_pred             HhccCCCCCHHHHHHHHHHHHHHHHhhCcccCC
Confidence            999999999999999999999999998887653

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2

Probab=99.89  E-value=2.2e-23  Score=183.55  Aligned_cols=147  Identities=14%  Similarity=0.156  Sum_probs=128.0

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      .+++++++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++++++|..+|++.+.+.++...        
T Consensus        19 yA~~av~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~   97 (227)
T cd03750          19 YALAAVSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYG   97 (227)
T ss_pred             HHHHHHHcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHC
Confidence            456789999999999999999999999977 78888999999999999999999999999999999988511        


Q ss_pred             -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                               +|+.....+.|++.+++.|+..|+.|++              ...++.+.|+|+ 
T Consensus        98 ~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~--------------~~~~~~a~G~g~-  162 (227)
T cd03750          98 EPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSY--------------FTWKATAIGKNY-  162 (227)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCE--------------EeeeEEEECCCC-
Confidence                                     1222223334888678899999999987              677899999999 


Q ss_pred             hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHH
Q psy9489         217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVL  255 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~l  255 (279)
                         +.+..+|+++|+++|+++|+.++..++|...+.+++
T Consensus       163 ---~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l  198 (227)
T cd03750         163 ---SNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQM  198 (227)
T ss_pred             ---HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC
Confidence               999999999999999999999999999998887654

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit

Probab=99.89  E-value=8e-23  Score=174.30  Aligned_cols=144  Identities=20%  Similarity=0.281  Sum_probs=126.4

Q ss_pred             CccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc----------------
Q psy9489          98 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI----------------  161 (279)
Q Consensus        98 G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~----------------  161 (279)
                      |+|+|||+++||||||+|+|.+.++++.+++.+||++|+++++++.+|..+|++.+.+.++.+.                
T Consensus         1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (185)
T TIGR03634         1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL   80 (185)
T ss_pred             CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            7999999999999999999999999999999999999999999999999999999999887410                


Q ss_pred             -------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHh
Q psy9489         162 -------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ  228 (279)
Q Consensus       162 -------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~  228 (279)
                                   .|+.....+.|++.+++.++..|+.|++              ...++.+.|+|+    +++..+|++
T Consensus        81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~--------------~~~~~~a~G~g~----~~~~~~Le~  142 (185)
T TIGR03634        81 ATLLSNILNSNRFFPFIVQLLVGGVDEEGPHLYSLDPAGGI--------------IEDDYTATGSGS----PVAYGVLED  142 (185)
T ss_pred             HHHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEECCCCCe--------------EECCEEEEcCcH----HHHHHHHHh
Confidence                         1222223344887778999999999987              666899999999    999999999


Q ss_pred             hcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         229 KILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       229 ~~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      .|+++++.+|+..+..+++...+.|+.++..
T Consensus       143 ~~~~~~s~~ea~~l~~~~l~~~~~r~~~~~~  173 (185)
T TIGR03634       143 EYREDMSVEEAKKLAVRAIKSAIERDVASGN  173 (185)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence            9999999999999999999999998887654

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>KOG0185|consensus

Probab=99.88  E-value=2.3e-23  Score=177.58  Aligned_cols=180  Identities=26%  Similarity=0.407  Sum_probs=127.0

Q ss_pred             CCCCCCCeeecCCCCCCCcc-c-cCCCcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeee
Q psy9489          66 KNGPSLGKYHDFPNVLPHYF-R-RSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGA  143 (279)
Q Consensus        66 ~~g~~~~~f~~~~~~~~~~~-~-~~~~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~  143 (279)
                      -+||+|+.|| |-+...-++ . +.+++++|+.+|||+||+||+||||||||++.|+|++.++++++||++|+|++++|+
T Consensus         8 ~g~pa~~~f~-~~~~~m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~   86 (256)
T KOG0185|consen    8 WGGPAPGTFY-PSGSLMENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGA   86 (256)
T ss_pred             cCCCCCCcCc-CccchhhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEec
Confidence            5689999999 223332223 2 567789999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccccchhhhhcc------------cc--------------------cccceeeEEEEEeCCcEEE-EEcCCCccC
Q psy9489         144 GNDYADFQYLNDIVKQK------------IT--------------------PLTTGTSVLGLVFNGGVIL-AADSAGYYG  190 (279)
Q Consensus       144 sG~~aD~~~l~~~l~~~------------~~--------------------pi~~g~tvlgi~~~~gvli-a~D~~gs~g  190 (279)
                      ||+.+|+|.+.+.|++.            +.                    |+-..-.+-|++.++-..+ .+|-+|.. 
T Consensus        87 sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~-  165 (256)
T KOG0185|consen   87 SGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVA-  165 (256)
T ss_pred             CccHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeecccc-
Confidence            99999999999999862            11                    2111112226665433333 46777755 


Q ss_pred             ceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHH---hhccCC-CCccc
Q psy9489         191 SMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVL---YNRRSQ-FDPLW  266 (279)
Q Consensus       191 ~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~l---ys~r~~-~~P~~  266 (279)
                                   .....+++|-|.    ..+..+||+.+.     ....+++.++....+.+.|   |.+.++ .+-|.
T Consensus       166 -------------Y~~~~vATGfg~----hLa~P~lR~~~~-----~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fq  223 (256)
T KOG0185|consen  166 -------------YESPVVATGFGA----HLALPLLRDEWE-----KKGEDLSREEAEALIEKCMRVLYYRDARASNEFQ  223 (256)
T ss_pred             -------------ccCchhhhhhHH----HhhhHHHHHhhh-----ccchhhHHHHHHHHHHHHHHHHhccccccccceE
Confidence                         456677888888    777778877775     1223555555444444433   433322 34455


Q ss_pred             eEE
Q psy9489         267 INA  269 (279)
Q Consensus       267 vs~  269 (279)
                      +..
T Consensus       224 va~  226 (256)
T KOG0185|consen  224 VAT  226 (256)
T ss_pred             EEE
Confidence            544

>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4

Probab=99.88  E-value=5.4e-23  Score=179.34  Aligned_cols=149  Identities=17%  Similarity=0.167  Sum_probs=128.3

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      .+++++++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++++++++||..+|++.+.+.++...        
T Consensus        21 ya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~  100 (213)
T cd03752          21 YAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQ  100 (213)
T ss_pred             hHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHC
Confidence            456789999999999999999999999998888887889999999999999999999999999999998510        


Q ss_pred             -------------------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489         162 -------------------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND  215 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~  215 (279)
                                               +|+..+..+.|++. +++.|+..|+.|++              ...++.+.|+|+
T Consensus       101 ~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~--------------~~~~~~a~G~gs  166 (213)
T cd03752         101 EPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNY--------------SGWKATAIGNNN  166 (213)
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCe--------------eeeeEEEECCCc
Confidence                                     12222233448874 46799999999987              556899999999


Q ss_pred             hhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHh
Q psy9489         216 YADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLY  256 (279)
Q Consensus       216 ~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~ly  256 (279)
                          ..+..+|+++|+++|+.+|+.++..++|.+++.|+..
T Consensus       167 ----~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~  203 (213)
T cd03752         167 ----QAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKL  203 (213)
T ss_pred             ----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCC
Confidence                9999999999999999999999999999999887643

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PRK05456 ATP-dependent protease subunit HslV; Provisional

Probab=99.88  E-value=1.5e-22  Score=170.61  Aligned_cols=139  Identities=18%  Similarity=0.182  Sum_probs=119.4

Q ss_pred             CccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEe-cCceEeeecCcccccccchhhhhcccc--------------
Q psy9489          98 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKIT--------------  162 (279)
Q Consensus        98 G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i-~~~~~~~~sG~~aD~~~l~~~l~~~~~--------------  162 (279)
                      |||++||+++||||||||+|.+.|.++.+++.+||++| ++++++++||..||+|+|.+.++.+.+              
T Consensus         1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~~~~~~a~l~   80 (172)
T PRK05456          1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGNLLRAAVELA   80 (172)
T ss_pred             CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCccHHHHHHHH
Confidence            79999999999999999999999999999999999999 999999999999999999999996211              


Q ss_pred             ------cc--cceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecc--cEEEEeccChhhHHHHHHHHHhhcc-
Q psy9489         163 ------PL--TTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINK--FTILGAGNDYADFQYLNDIVKQKIL-  231 (279)
Q Consensus       163 ------pi--~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~--~~~~~gSG~~aD~~~l~~~l~~~~~-  231 (279)
                            |.  .....+|  .++++.++..|+.|+.              +.+  ++++.|||+    .+++++|+++|+ 
T Consensus        81 ~~l~~~~~~~~l~~~~l--v~d~~~ly~id~~G~~--------------~~~~~~~~a~GSGs----~~a~g~ld~~y~~  140 (172)
T PRK05456         81 KDWRTDRYLRRLEAMLI--VADKEHSLIISGNGDV--------------IEPEDGIIAIGSGG----NYALAAARALLEN  140 (172)
T ss_pred             HHHHhccCCCccEEEEE--EEcCCcEEEECCCCcE--------------eccCCCeEEEecCH----HHHHHHHHHhhhc
Confidence                  11  0112222  1456788888988865              444  799999999    999999999999 


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         232 DDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       232 ~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      ++|   |+.++..+++.+++.|+.+|..
T Consensus       141 ~~m---eA~~la~kai~~A~~Rd~~sg~  165 (172)
T PRK05456        141 TDL---SAEEIAEKALKIAADICIYTNH  165 (172)
T ss_pred             CCC---CHHHHHHHHHHHHHHhCeeCCC
Confidence            988   8999999999999999999864

>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3

Probab=99.88  E-value=7.1e-23  Score=178.54  Aligned_cols=145  Identities=12%  Similarity=0.123  Sum_probs=124.4

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      .+++++++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++++++|+.+|++.+.+.++...        
T Consensus        22 ya~~a~~~G~tvIgik~kdgVvla~d~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~  100 (212)
T cd03751          22 YANKAVENSGTAIGIRCKDGVVLAVEKLVT-SKLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYG  100 (212)
T ss_pred             HHHHHHhcCCCEEEEEeCCEEEEEEEcccc-ccccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHC
Confidence            456788999999999999999999999976 47777789999999999999999999999999999988411        


Q ss_pred             -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                               +|+.....+.|++.+++.|+..|+.|++              ...++.+.|+|+ 
T Consensus       101 ~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~--------------~~~~~~a~G~g~-  165 (212)
T cd03751         101 TPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVS--------------YGYFGCAIGKGK-  165 (212)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCE--------------EeeEEEEECCCC-
Confidence                                     1222223344888668999999999988              677899999999 


Q ss_pred             hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489         217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR  253 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr  253 (279)
                         ..+..+||++|+++|+++|+.++..++|.+.+..
T Consensus       166 ---~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~  199 (212)
T cd03751         166 ---QAAKTELEKLKFSELTCREAVKEAAKIIYIVHDE  199 (212)
T ss_pred             ---HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhc
Confidence               9999999999999999999988888888887763

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit

Probab=99.88  E-value=2.3e-22  Score=172.21  Aligned_cols=143  Identities=15%  Similarity=0.219  Sum_probs=124.3

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------cccc-----
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TPLT-----  165 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~pi~-----  165 (279)
                      ||+|||+++||||||+|+|.+.|+++.+++.+||++|+++++++++|..+|+|.+.+.++.+.        ++++     
T Consensus         1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (189)
T cd03763           1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL   80 (189)
T ss_pred             CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999888521        1111     


Q ss_pred             -------------ceee--EEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhc
Q psy9489         166 -------------TGTS--VLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI  230 (279)
Q Consensus       166 -------------~g~t--vlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~  230 (279)
                                   .+.+  +.|++.+++.|+..|+.|++              ...++.+.|+|+    ..+..+|+++|
T Consensus        81 ~~l~~~l~~~~~p~~v~~ivaG~d~~g~~ly~~d~~G~~--------------~~~~~~a~G~~~----~~~~~~L~~~~  142 (189)
T cd03763          81 TMLKQHLFRYQGHIGAALVLGGVDYTGPHLYSIYPHGST--------------DKLPFVTMGSGS----LAAMSVLEDRY  142 (189)
T ss_pred             HHHHHHHHHcCCccceeEEEEeEcCCCCEEEEECCCCCE--------------EecCEEEEcCCH----HHHHHHHHhhc
Confidence                         1222  33787667899999999987              677899999999    99999999999


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         231 LDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       231 ~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      +++++.+|+.++..+++.....|+.++..
T Consensus       143 ~~~ls~~ea~~l~~~~l~~~~~rd~~~~~  171 (189)
T cd03763         143 KPDMTEEEAKKLVCEAIEAGIFNDLGSGS  171 (189)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCcCCC
Confidence            99999999999999999999998877643

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit

Probab=99.88  E-value=2.2e-22  Score=172.92  Aligned_cols=142  Identities=16%  Similarity=0.204  Sum_probs=124.5

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------------  161 (279)
                      +|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++.||+.||+|.+.+.++...                 
T Consensus         2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la   81 (193)
T cd03758           2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA   81 (193)
T ss_pred             ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999988510                 


Q ss_pred             --------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHH
Q psy9489         162 --------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV  226 (279)
Q Consensus       162 --------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l  226 (279)
                                    .|+..+..+.|++. .++.|+..|+.|++              ...++.+.|+|+    +.+..+|
T Consensus        82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~--------------~~~~~~a~G~gs----~~~~~~L  143 (193)
T cd03758          82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTL--------------VKVPYAAHGYGA----YFCLSIL  143 (193)
T ss_pred             HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcce--------------EECCeeEEeecH----HHHHHHH
Confidence                          13333333448874 57899999999987              677899999999    9999999


Q ss_pred             HhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       227 ~~~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      |+.|+++|+.+|+.++..+++.+...|+..+.
T Consensus       144 e~~~~~~ms~eeai~l~~~a~~~~~~rd~~~~  175 (193)
T cd03758         144 DRYYKPDMTVEEALELMKKCIKELKKRFIINL  175 (193)
T ss_pred             HhccCCCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            99999999999999999999999998887654

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit

Probab=99.88  E-value=2.7e-22  Score=171.56  Aligned_cols=142  Identities=20%  Similarity=0.262  Sum_probs=122.9

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------ccc------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TPL------  164 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~pi------  164 (279)
                      +|+|||+++||||||+|+|.+.|+++.+++.+||++|+++++++++|+.+|+|.|.+.++...        +++      
T Consensus         1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a   80 (188)
T cd03762           1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA   80 (188)
T ss_pred             CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999987511        111      


Q ss_pred             ------------cceee--EEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhh
Q psy9489         165 ------------TTGTS--VLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK  229 (279)
Q Consensus       165 ------------~~g~t--vlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~  229 (279)
                                  ..+.+  +.|++. +++.++..|+.|++              ...+++++|+|+    +.+..+|++.
T Consensus        81 ~~l~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~--------------~~~~~~~~G~g~----~~~~~~Le~~  142 (188)
T cd03762          81 SLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGML--------------IRQPFAIGGSGS----TYIYGYVDAN  142 (188)
T ss_pred             HHHHHHHHhccccceeeEEEEEEcCCCCcEEEEECCCCCE--------------EecCEEEEcccH----HHHHHHHHhc
Confidence                        02333  337764 56899999999987              566788899999    9999999999


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       230 ~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      |+++++.+|+.++..+++..++.|+..+.
T Consensus       143 ~~~~~s~~ea~~l~~~al~~~~~rd~~~~  171 (188)
T cd03762         143 YKPGMTLEECIKFVKNALSLAMSRDGSSG  171 (188)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            99999999999999999999999988764

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type

Probab=99.88  E-value=2e-22  Score=176.50  Aligned_cols=145  Identities=17%  Similarity=0.231  Sum_probs=124.8

Q ss_pred             CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------------
Q psy9489          97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI---------------  161 (279)
Q Consensus        97 ~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~---------------  161 (279)
                      +|+|+|||+++||||||+|+|.+.|+++.+++.+||++|++|++++++|+.+|++.+.+.++.+.               
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~   80 (219)
T TIGR03690         1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG   80 (219)
T ss_pred             CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence            48999999999999999999999999999999999999999999999999999999999998411               


Q ss_pred             -----------------ccccceeeEEEEEe--CCcEEEEEcCCCc-cCceeeecCCCceEEecccEEEEeccChhhHHH
Q psy9489         162 -----------------TPLTTGTSVLGLVF--NGGVILAADSAGY-YGSMMRFNDCPRIMQINKFTILGAGNDYADFQY  221 (279)
Q Consensus       162 -----------------~pi~~g~tvlgi~~--~~gvlia~D~~gs-~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~  221 (279)
                                       +|+.....+.|++.  .++.++.+|+.|+ +              ...++.+.|+|+    +.
T Consensus        81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~--------------~~~~~~a~G~g~----~~  142 (219)
T TIGR03690        81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRY--------------EERGYHAVGSGS----VF  142 (219)
T ss_pred             HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCee--------------ecCCeEEEeccH----HH
Confidence                             12211222337874  3578999999994 4              344689999999    99


Q ss_pred             HHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         222 LNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       222 l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      +..+|+++|+++|+.+|+.++..+++.+.+.++.++..
T Consensus       143 a~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~  180 (219)
T TIGR03690       143 AKGALKKLYSPDLDEDDALRVAVEALYDAADDDSATGG  180 (219)
T ss_pred             HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHhcccccCC
Confidence            99999999999999999999999999999999987765

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.

>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit

Probab=99.87  E-value=3.8e-22  Score=170.57  Aligned_cols=143  Identities=20%  Similarity=0.267  Sum_probs=124.2

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------------  161 (279)
                      +|+|||+++||||||+|+|.+.|+++.+++.+||++|+++++++++|+.+|++.+.+.++...                 
T Consensus         1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~   80 (188)
T cd03764           1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA   80 (188)
T ss_pred             CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999888511                 


Q ss_pred             ------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhh
Q psy9489         162 ------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK  229 (279)
Q Consensus       162 ------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~  229 (279)
                                  .|......+.|++.+++.|+..|+.|++              ...++.+.|+|+    +++..+|++.
T Consensus        81 ~~i~~~~~~~~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~--------------~~~~~~a~G~g~----~~~~~~L~~~  142 (188)
T cd03764          81 TLLSNILNSSKYFPYIVQLLIGGVDEEGPHLYSLDPLGSI--------------IEDKYTATGSGS----PYAYGVLEDE  142 (188)
T ss_pred             HHHHHHHHhcCCCCcEEEEEEEEEeCCCCEEEEECCCCCE--------------EEcCEEEEcCcH----HHHHHHHHhc
Confidence                        1221222333787667899999999987              566799999999    9999999999


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       230 ~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      |+++++.+|+.++..+++...+.|+.++..
T Consensus       143 ~~~~~~~~ea~~l~~~~l~~~~~rd~~~~~  172 (188)
T cd03764         143 YKEDMTVEEAKKLAIRAIKSAIERDSASGD  172 (188)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence            999999999999999999999998876643

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PTZ00246 proteasome subunit alpha; Provisional

Probab=99.87  E-value=2.2e-22  Score=179.97  Aligned_cols=149  Identities=19%  Similarity=0.143  Sum_probs=127.6

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc--------c
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------I  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------~  161 (279)
                      .+++++++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.+.+.++..        .
T Consensus        23 YA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~  102 (253)
T PTZ00246         23 YALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYG  102 (253)
T ss_pred             HHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHC
Confidence            56779999999999999999999999999988888888899999999999999999999999999987741        0


Q ss_pred             -------------------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489         162 -------------------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND  215 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~  215 (279)
                                               +|+.....+.|++. +++.|+..|+.|++              ...++.+.|+|+
T Consensus       103 ~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~--------------~~~~~~a~G~gs  168 (253)
T PTZ00246        103 EPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNY--------------SGWKATAIGQNN  168 (253)
T ss_pred             CCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCE--------------ecceEEEECCCc
Confidence                                     12222233448874 56789999999987              567789999999


Q ss_pred             hhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHh
Q psy9489         216 YADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLY  256 (279)
Q Consensus       216 ~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~ly  256 (279)
                          +.+..+|+++|+++|+.+|+.++..++|...+.++..
T Consensus       169 ----~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~  205 (253)
T PTZ00246        169 ----QTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSP  205 (253)
T ss_pred             ----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCC
Confidence                9999999999999999999999999999988876654

>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal

Probab=99.87  E-value=1.7e-22  Score=175.97  Aligned_cols=147  Identities=18%  Similarity=0.225  Sum_probs=125.9

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK---------  160 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~---------  160 (279)
                      .+++++++|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++++.||+.+|++.+.+.++..         
T Consensus        20 ya~~av~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~   98 (211)
T cd03756          20 YAREAVKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYG   98 (211)
T ss_pred             HHHHHHHcCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            456788999999999999999999999976 6778889999999999999999999999999999988741         


Q ss_pred             ------------------------cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         161 ------------------------ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       161 ------------------------~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                              .+|......+.|++..++.|+..|+.|++              ...++.+.|+|+ 
T Consensus        99 ~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~--------------~~~~~~a~G~g~-  163 (211)
T cd03756          99 EPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAY--------------NEYKATAIGSGR-  163 (211)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCe--------------eeeEEEEECCCC-
Confidence                                    01222333444888778999999999987              566789999999 


Q ss_pred             hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHH
Q psy9489         217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVL  255 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~l  255 (279)
                         +.+..+|++.|+++|+.+|+.++..+++..++.+++
T Consensus       164 ---~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~  199 (211)
T cd03756         164 ---QAVTEFLEKEYKEDMSLEEAIELALKALYAALEENE  199 (211)
T ss_pred             ---HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC
Confidence               999999999999999999999999999998877654

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01911 proteasome_alpha proteasome alpha subunit

Probab=99.87  E-value=2.3e-22  Score=174.88  Aligned_cols=147  Identities=16%  Similarity=0.183  Sum_probs=126.7

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      .+++++.+|+|+|||+++||||||+|+|.+. +++..++.+||++|+++++++++|..+|++.+.+.++...        
T Consensus        19 ya~~~~~~G~tvigi~~~dgVvlaaD~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g   97 (209)
T cd01911          19 YALEAVKNGSTAVGIKGKDGVVLAVEKKVTS-KLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYG   97 (209)
T ss_pred             HHHHHHHcCCCEEEEEECCEEEEEEEecCCc-cccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhC
Confidence            3456889999999999999999999999875 5667789999999999999999999999999999988410        


Q ss_pred             -------------------------ccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489         162 -------------------------TPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND  215 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~  215 (279)
                                               +|+.....+.|++.+ ++.|+..|+.|++              ...++.+.|+|+
T Consensus        98 ~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~--------------~~~~~~a~G~g~  163 (209)
T cd01911          98 EPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTY--------------FGYKATAIGKGS  163 (209)
T ss_pred             CCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCe--------------eeeeEEEeCCCc
Confidence                                     133333444588755 7889999999987              567799999999


Q ss_pred             hhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHH
Q psy9489         216 YADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVL  255 (279)
Q Consensus       216 ~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~l  255 (279)
                          ..+..+|++.|+++|+.+|+.++..+++.+...|++
T Consensus       164 ----~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~  199 (209)
T cd01911         164 ----QEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK  199 (209)
T ss_pred             ----HHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC
Confidence                999999999999999999999999999999998876

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.

>KOG0174|consensus

Probab=99.87  E-value=5.3e-23  Score=170.88  Aligned_cols=147  Identities=19%  Similarity=0.263  Sum_probs=120.8

Q ss_pred             cCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------ccc
Q psy9489          93 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TPL  164 (279)
Q Consensus        93 ~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~pi  164 (279)
                      +++++|||++|+.|+|||||+||+|.|.|.++.+|-.+|+.+|+|+++||.||.+||.|.+.+.+++++        +|.
T Consensus        14 ~evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p   93 (224)
T KOG0174|consen   14 EEVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPP   93 (224)
T ss_pred             cccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCc
Confidence            378899999999999999999999999999999999999999999999999999999999999999733        121


Q ss_pred             c--c------------------eeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHH
Q psy9489         165 T--T------------------GTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLN  223 (279)
Q Consensus       165 ~--~------------------g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~  223 (279)
                      .  .                  |-.+.|.+. ++|.+++.---|+.              ....++++|||+    .+++
T Consensus        94 ~v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~iplGG~l--------------~rq~~aIgGSGS----tfIY  155 (224)
T KOG0174|consen   94 LVHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSIPLGGSL--------------TRQPFAIGGSGS----TFIY  155 (224)
T ss_pred             hHHHHHHHHHHHHHhCHHhhhcceEEeecccccCceEEEeecCceE--------------eecceeeccCCc----eeee
Confidence            1  1                  111113332 24455544333322              456799999999    9999


Q ss_pred             HHHHhhcccccccccCCCCCHHHHHHHHHHHHhh
Q psy9489         224 DIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYN  257 (279)
Q Consensus       224 ~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys  257 (279)
                      ++++.+|++.|++||+..+..++++.++.|+--|
T Consensus       156 Gf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsS  189 (224)
T KOG0174|consen  156 GFCDANWRPNMTLEECVRFVKNAVSLAIERDGSS  189 (224)
T ss_pred             eeehhhcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            9999999999999999999999999999998755

>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7

Probab=99.87  E-value=3.8e-22  Score=173.30  Aligned_cols=144  Identities=15%  Similarity=0.192  Sum_probs=123.3

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK---------  160 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~---------  160 (279)
                      .+++++++|+|+|||+++||||||+|+|.+ ..++.+++.+||++|++|++++++|+.+|++.+.+.++..         
T Consensus        19 ya~~av~~G~t~Igik~~dgVvlaad~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~   97 (207)
T cd03755          19 YAQEAVRKGTTAVGVRGKDCVVLGVEKKSV-AKLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVE   97 (207)
T ss_pred             HHHHHHHcCCCEEEEEeCCEEEEEEecCCC-CcccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHC
Confidence            456789999999999999999999999955 5677788999999999999999999999999999988851         


Q ss_pred             ------------------------cccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489         161 ------------------------ITPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND  215 (279)
Q Consensus       161 ------------------------~~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~  215 (279)
                                              .+|+.....+.|++.+ ++.|+..|+.|++              ...+..+.|+|+
T Consensus        98 ~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~--------------~~~~~~a~G~gs  163 (207)
T cd03755          98 DPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTY--------------SAWKANAIGRNS  163 (207)
T ss_pred             CCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCE--------------EcceEEEECCCC
Confidence                                    1133333344488754 7899999999987              666789999999


Q ss_pred             hhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHH
Q psy9489         216 YADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLT  252 (279)
Q Consensus       216 ~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~is  252 (279)
                          +.+..+|+++|+++|+.+|+.++..++|...+.
T Consensus       164 ----~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~  196 (207)
T cd03755         164 ----KTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ  196 (207)
T ss_pred             ----HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC
Confidence                999999999999999999999999999988875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0179|consensus

Probab=99.87  E-value=4.5e-22  Score=167.16  Aligned_cols=166  Identities=16%  Similarity=0.192  Sum_probs=132.5

Q ss_pred             eecCCCCCCCccccCCCcCcCcc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCccccccc
Q psy9489          74 YHDFPNVLPHYFRRSGSFSTPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY  152 (279)
Q Consensus        74 f~~~~~~~~~~~~~~~~~~~~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~  152 (279)
                      ++.+|+....  .+.+.+|+|+. +|+|++||++.|+.|||+|||.+.|+.|.+|+.+|||+++|+++++.+|++||+..
T Consensus         6 ~~~~~~~~s~--~~~~~~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~   83 (235)
T KOG0179|consen    6 IESASGGSSK--TMDHERFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLA   83 (235)
T ss_pred             eeecCCCccC--ccccccCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHH
Confidence            4555643222  35667899998 99999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhccc-----------------------------ccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceE
Q psy9489         153 LNDIVKQKI-----------------------------TPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIM  202 (279)
Q Consensus       153 l~~~l~~~~-----------------------------~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~  202 (279)
                      |+..+++.+                             -|+...+.+-|++.+ .|.|+..||.|++             
T Consensus        84 L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsy-------------  150 (235)
T KOG0179|consen   84 LVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSY-------------  150 (235)
T ss_pred             HHHHHHHHHHHHhhcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcce-------------
Confidence            999888521                             244455666688865 5899999999998             


Q ss_pred             EecccEEEEeccChhhHHHHHHHHHhhccc-----------ccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         203 QINKFTILGAGNDYADFQYLNDIVKQKILD-----------DDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       203 ~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~-----------~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                       -...+.++||+.    ..+..+|+++...           .++++++.+|..++...+.+|++|+..
T Consensus       151 -er~~~~AgGsa~----~mI~PfLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD  213 (235)
T KOG0179|consen  151 -ERVTCRAGGSAA----SMIQPFLDNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGD  213 (235)
T ss_pred             -eeeeeecCCcch----hhhhhhhhhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCC
Confidence             445678888888    8899999887642           234456666666777777777887764

>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit

Probab=99.87  E-value=5e-22  Score=174.52  Aligned_cols=148  Identities=17%  Similarity=0.213  Sum_probs=125.4

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK---------  160 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~---------  160 (279)
                      .+++++++|+|+|||+++||||||+|+|.+ ++++..++.+||++|++++++++||..+|++.+.+.++..         
T Consensus        21 ya~~av~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   99 (224)
T TIGR03633        21 YAREAVKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYG   99 (224)
T ss_pred             HHHHHHHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHC
Confidence            456789999999999999999999999987 7788889999999999999999999999999999887641         


Q ss_pred             ------------------------cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         161 ------------------------ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       161 ------------------------~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                              .+|......+.|++..++.|+..|+.|++              ...++.+.|+|+ 
T Consensus       100 ~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~--------------~~~~~~a~G~g~-  164 (224)
T TIGR03633       100 EPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAL--------------LEYKATAIGAGR-  164 (224)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCe--------------ecceEEEECCCC-
Confidence                                    01222233344888667899999999987              566789999999 


Q ss_pred             hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhh
Q psy9489         217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYN  257 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys  257 (279)
                         ..+..+|++.|+++++.+|+.++..+++.++.. +..+
T Consensus       165 ---~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~  201 (224)
T TIGR03633       165 ---QAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLT  201 (224)
T ss_pred             ---HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCC
Confidence               999999999999999999999999999988776 4433

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>KOG0177|consensus

Probab=99.86  E-value=9.1e-23  Score=168.94  Aligned_cols=76  Identities=26%  Similarity=0.308  Sum_probs=71.7

Q ss_pred             CccccccccccccCCeeeccccchhhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcc--------ccccCCCCCCCCC
Q psy9489           1 FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVR--------DARSGAKNGPSLG   72 (279)
Q Consensus         1 ~l~~~d~~~~~~~~~~~~~g~g~~~~~~~l~~~~~~~~~~~~~ea~~l~~~c~~~~~~r--------d~~~~~~~g~~~~   72 (279)
                      +|+||||||++.++||+|||||++||+|||||+|+  ||||.|||++|++||+.||++|        .++++||+|+...
T Consensus       114 ~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~--pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~  191 (200)
T KOG0177|consen  114 ELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYK--PDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDGIRKL  191 (200)
T ss_pred             ceeeehhhhhcccCCcccccchhhhhHHHHHhhhC--CCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCceec
Confidence            58999999999999999999999999999999997  8999999999999999999999        8899999999988


Q ss_pred             eeecCC
Q psy9489          73 KYHDFP   78 (279)
Q Consensus        73 ~f~~~~   78 (279)
                      ...+++
T Consensus       192 ~~i~~~  197 (200)
T KOG0177|consen  192 DDINFI  197 (200)
T ss_pred             cccccc
Confidence            776654

>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins

Probab=99.86  E-value=8.8e-22  Score=167.92  Aligned_cols=147  Identities=27%  Similarity=0.366  Sum_probs=125.9

Q ss_pred             ccCCccEEEEEeCCeEEEEEeCCCccCCceeeCC-CCceEEecCceEeeecCcccccccchhhhhccc------------
Q psy9489          95 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFND-CPRIMQINKFTILGAGNDYADFQYLNDIVKQKI------------  161 (279)
Q Consensus        95 ~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~-~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~------------  161 (279)
                      |++|+|+|||+++||||||+|+|.+.|+.+..++ .+||++|+++++++++|..+|++.+.+.++...            
T Consensus         1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~   80 (190)
T PF00227_consen    1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS   80 (190)
T ss_dssp             HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred             CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence            4689999999999999999999999998887666 799999999999999999999999999988510            


Q ss_pred             ---------------------ccccceeeEEEEEeCC-cEEEEEcCCCccCceeeecCCCceEEecc-cEEEEeccChhh
Q psy9489         162 ---------------------TPLTTGTSVLGLVFNG-GVILAADSAGYYGSMMRFNDCPRIMQINK-FTILGAGNDYAD  218 (279)
Q Consensus       162 ---------------------~pi~~g~tvlgi~~~~-gvlia~D~~gs~g~li~~~~~~kI~~i~~-~~~~~gSG~~aD  218 (279)
                                           +|......+.|++.++ +.|+..|+.|++              ... ++.+.|+|+   
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~--------------~~~~~~~aiG~g~---  143 (190)
T PF00227_consen   81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSY--------------IECKRFAAIGSGS---  143 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEE--------------EEBSSEEEESTTH---
T ss_pred             chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeecccccc--------------ccccccccchhcc---
Confidence                                 1222223344888665 889999999987              566 699999999   


Q ss_pred             HHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         219 FQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       219 ~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                       +.+..+|++.|+++++++|+.++..+++..+..++..+..
T Consensus       144 -~~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~~d~~~~~  183 (190)
T PF00227_consen  144 -QFAQPILEKLYKPDLSLEEAIELALKALKEAIDRDILSGD  183 (190)
T ss_dssp             -HHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHBTTSTS
T ss_pred             -hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhCCccCC
Confidence             9999999999999999999999999999999988877654

They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....

>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome

Probab=99.86  E-value=1.9e-21  Score=163.10  Aligned_cols=138  Identities=15%  Similarity=0.127  Sum_probs=115.6

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecC-ceEeeecCcccccccchhhhhccccccc------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINK-FTILGAGNDYADFQYLNDIVKQKITPLT------------  165 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~-~~~~~~sG~~aD~~~l~~~l~~~~~pi~------------  165 (279)
                      ||++||+++||||||+|+|.+.|.++.+++.+||++|++ |++|+.||..||+|+|.+.++.+.+-..            
T Consensus         1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~~aa~l~~   80 (171)
T cd01913           1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLRAAVELAK   80 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence            699999999999999999999999999999999999999 9999999999999999999986321100            


Q ss_pred             ----------ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecc--cEEEEeccChhhHHHHHHHHHhhcccc
Q psy9489         166 ----------TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINK--FTILGAGNDYADFQYLNDIVKQKILDD  233 (279)
Q Consensus       166 ----------~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~--~~~~~gSG~~aD~~~l~~~l~~~~~~~  233 (279)
                                ..+.++.  .+...++..|+.|+.              +++  ++.++|||+    .++++.++.+|+++
T Consensus        81 ~l~~~~~~~~l~a~~iv--~~~~~ly~id~~G~~--------------ie~~~~~~a~GSGS----~ya~g~ld~~yk~~  140 (171)
T cd01913          81 DWRTDRYLRRLEAMLIV--ADKEHTLLISGNGDV--------------IEPDDGIAAIGSGG----NYALAAARALLDHT  140 (171)
T ss_pred             HHHhccCcCceEEEEEE--eCCCcEEEECCCCCE--------------eccCCCeEEEeCCH----HHHHHHHHHhhccC
Confidence                      1122222  233478888888865              555  599999999    99999999999984


Q ss_pred             -cccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         234 -DLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       234 -~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                       |+   +.++..+++..++.|+.+|.-
T Consensus       141 ~ms---~~~la~~Av~~A~~rd~~tg~  164 (171)
T cd01913         141 DLS---AEEIARKALKIAADICIYTNH  164 (171)
T ss_pred             CCC---HHHHHHHHHHHHHhhCcccCC
Confidence             88   349999999999999999864

HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.

>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1

Probab=99.85  E-value=1e-21  Score=171.06  Aligned_cols=144  Identities=14%  Similarity=0.137  Sum_probs=120.6

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      .+++++++|+|+|||+++||||||+|+|.+.+ +  .++.+||++|++++++++||+.+|++.+.+.++.+.        
T Consensus        19 ya~~av~~G~t~IgIk~~dgVvlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~   95 (211)
T cd03749          19 YAMEAVKQGSATVGLKSKTHAVLVALKRATSE-L--SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYD   95 (211)
T ss_pred             HHHHHHhcCCCEEEEEeCCEEEEEEeccCccc-c--CCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhC
Confidence            45779999999999999999999999996544 3  457799999999999999999999999999998511        


Q ss_pred             -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                               +|+..+..+.|++.+++.|+..|+.|++              ...++.+.|+|+ 
T Consensus        96 ~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~--------------~~~~~~a~G~g~-  160 (211)
T cd03749          96 SPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNY--------------FEYKATSIGARS-  160 (211)
T ss_pred             CCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCE--------------eeeeEEEECCCc-
Confidence                                     1322233344888778999999999987              666789999999 


Q ss_pred             hhHHHHHHHHHhhcc--cccccccCCCCCHHHHHHHHHHH
Q psy9489         217 ADFQYLNDIVKQKIL--DDDLHNDGFVLKPKSLHSWLTRV  254 (279)
Q Consensus       217 aD~~~l~~~l~~~~~--~~~~~ee~~~l~~~~la~~isr~  254 (279)
                         +.+..+||++|+  ++|+.+|+.++..++|.+++.++
T Consensus       161 ---~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~  197 (211)
T cd03749         161 ---QSARTYLERHFEEFEDCSLEELIKHALRALRETLPGE  197 (211)
T ss_pred             ---HHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccC
Confidence               999999999998  58899998888888888887754

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5

Probab=99.85  E-value=1.2e-21  Score=170.77  Aligned_cols=145  Identities=17%  Similarity=0.182  Sum_probs=122.7

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      .+++++++|+|+|||+++||||||+|+|.+. .++..++.+||++|+++++++++|..+|+|.+.+.++...        
T Consensus        19 ya~~a~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~   97 (213)
T cd03753          19 YAIEAIKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYN   97 (213)
T ss_pred             HHHHHHhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4567889999999999999999999999874 6677889999999999999999999999999998887410        


Q ss_pred             ------------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEE
Q psy9489         162 ------------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG  211 (279)
Q Consensus       162 ------------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~  211 (279)
                                                    +|......+.|++.+++.|+..|+.|++              ...++.+.
T Consensus        98 ~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~--------------~~~~~~a~  163 (213)
T cd03753          98 EPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTF--------------TRCDAKAI  163 (213)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCe--------------ecccEEEE
Confidence                                          1222223334887778899999999987              66789999


Q ss_pred             eccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489         212 AGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR  253 (279)
Q Consensus       212 gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr  253 (279)
                      |+|+    +.+..+|+++|+++++.+|+.++..++|.....+
T Consensus       164 G~~~----~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~  201 (213)
T cd03753         164 GSGS----EGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEE  201 (213)
T ss_pred             CCCc----HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcc
Confidence            9999    9999999999999999999999999988876554

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit

Probab=99.85  E-value=3.9e-21  Score=161.15  Aligned_cols=139  Identities=14%  Similarity=0.141  Sum_probs=115.0

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEe-cCceEeeecCcccccccchhhhhcccc---------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKIT---------------  162 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i-~~~~~~~~sG~~aD~~~l~~~l~~~~~---------------  162 (279)
                      ||++||+++||||||+|+|.+.|.++.+++.+||++| ++|++++.||..||+|+|.+.++.+.+               
T Consensus         1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~~~~~a~l~~   80 (171)
T TIGR03692         1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNLTRAAVELAK   80 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence            6999999999999999999999999999999999999 599999999999999999999997321               


Q ss_pred             -----ccc--ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecc--cEEEEeccChhhHHHHHHHHHhhcccc
Q psy9489         163 -----PLT--TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINK--FTILGAGNDYADFQYLNDIVKQKILDD  233 (279)
Q Consensus       163 -----pi~--~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~--~~~~~gSG~~aD~~~l~~~l~~~~~~~  233 (279)
                           |..  ....++.  .+...++..|+.|+.              +++  ++.++|||+    .++++.++.+|++ 
T Consensus        81 ~~~~~~~~~~l~a~~iv--~~~~~ly~i~~~G~~--------------ie~~~~~~a~GSGS----~~a~g~ld~~y~~-  139 (171)
T TIGR03692        81 DWRTDRYLRRLEAMLIV--ADKETSLLISGTGDV--------------IEPEDGIAAIGSGG----NYALAAARALLRN-  139 (171)
T ss_pred             HHhhcccccccEEEEEE--EcCCCEEEEcCCCcE--------------eccCCCeEEEeCCH----HHHHHHHHHhhhc-
Confidence                 100  1122222  234478888888875              553  699999999    9999999999952 


Q ss_pred             cccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         234 DLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       234 ~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                       +..++.++..+++..++.|+.+|.-
T Consensus       140 -~~~sa~~la~~Av~~A~~rd~~sg~  164 (171)
T TIGR03692       140 -TDLSAEEIAREALKIAADICIYTNH  164 (171)
T ss_pred             -CCCCHHHHHHHHHHHHHhhCccCCC
Confidence             2234899999999999999999864

The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.

>PRK03996 proteasome subunit alpha; Provisional

Probab=99.85  E-value=1.7e-21  Score=173.03  Aligned_cols=145  Identities=17%  Similarity=0.220  Sum_probs=123.8

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK---------  160 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~---------  160 (279)
                      .+++++++|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++++++|..+|++.+.+.++..         
T Consensus        28 ya~~av~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~  106 (241)
T PRK03996         28 YAREAVKRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYG  106 (241)
T ss_pred             HHHHHHHhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            456788999999999999999999999987 7788889999999999999999999999999999887741         


Q ss_pred             ------------------------cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         161 ------------------------ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       161 ------------------------~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                              .+|+.....+.|++.+++.|+..|+.|++              ...++.+.|+|+ 
T Consensus       107 ~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~--------------~~~~~~a~G~g~-  171 (241)
T PRK03996        107 EPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAY--------------LEYKATAIGAGR-  171 (241)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCe--------------ecceEEEECCCc-
Confidence                                    01222233344787667899999999987              566789999999 


Q ss_pred             hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489         217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR  253 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr  253 (279)
                         ..+..+|+++|+++++.+|+.++..+++.++..+
T Consensus       172 ---~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~  205 (241)
T PRK03996        172 ---DTVMEFLEKNYKEDLSLEEAIELALKALAKANEG  205 (241)
T ss_pred             ---HHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc
Confidence               9999999999999999999999999988887654

>KOG0173|consensus

Probab=99.84  E-value=2.2e-21  Score=167.05  Aligned_cols=149  Identities=16%  Similarity=0.240  Sum_probs=126.1

Q ss_pred             cCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------c-
Q psy9489          93 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI---------T-  162 (279)
Q Consensus        93 ~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~---------~-  162 (279)
                      ...++|||++||+||||||++||+|++.|+.+..++++||+.|.++|+||.+|.+||...+.+.+.+++         + 
T Consensus        32 ~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~  111 (271)
T KOG0173|consen   32 KATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKP  111 (271)
T ss_pred             cccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCC
Confidence            355799999999999999999999999999999999999999999999999999999999988777532         1 


Q ss_pred             ccc----------------ceeeEE--EEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHH
Q psy9489         163 PLT----------------TGTSVL--GLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLND  224 (279)
Q Consensus       163 pi~----------------~g~tvl--gi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~  224 (279)
                      ++.                .|+.+|  |++..++.++..-+-||..              .-.+.+.|||+    +.++.
T Consensus       112 rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~TGpHLy~i~phGStd--------------~~Pf~alGSGs----laAms  173 (271)
T KOG0173|consen  112 RVVTALRMLKQHLFRYQGHIGAALILGGVDPTGPHLYSIHPHGSTD--------------KLPFTALGSGS----LAAMS  173 (271)
T ss_pred             ceeeHHHHHHHHHHHhcCcccceeEEccccCCCCceEEEcCCCCcC--------------ccceeeeccch----HHHHH
Confidence            222                123333  6667777777777777662              23589999999    88889


Q ss_pred             HHHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         225 IVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       225 ~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      +||..|+++|+.||+.+|..++++.-|.+++.|.-
T Consensus       174 vlEsr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGs  208 (271)
T KOG0173|consen  174 VLESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGS  208 (271)
T ss_pred             HHHHhcCcccCHHHHHHHHHHHHHhhhccccCCCC
Confidence            99999999999999999999999999999998753

>cd01912 proteasome_beta proteasome beta subunit

Probab=99.84  E-value=1.2e-20  Score=161.06  Aligned_cols=142  Identities=24%  Similarity=0.323  Sum_probs=121.7

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------------  161 (279)
                      ||+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++.+|+.+|++.+.+.++...                 
T Consensus         1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~   80 (189)
T cd01912           1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA   80 (189)
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            689999999999999999999999988999999999999999999999999999999887410                 


Q ss_pred             ------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHh
Q psy9489         162 ------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ  228 (279)
Q Consensus       162 ------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~  228 (279)
                                  .|......+.|++. .++.|+..|+.|++              ...++++.|+|+    +.+..+|++
T Consensus        81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~--------------~~~~~~a~G~~~----~~~~~~Le~  142 (189)
T cd01912          81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSL--------------IEAPFVATGSGS----KYAYGILDR  142 (189)
T ss_pred             HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCe--------------EecCEEEEcccH----HHHHHHHHh
Confidence                        12222223337875 57899999999987              667799999999    999999999


Q ss_pred             hcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         229 KILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       229 ~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      .|+++++++++.++..+++.+...++..+.
T Consensus       143 ~~~~~~s~~ea~~~~~~~l~~~~~~d~~~~  172 (189)
T cd01912         143 GYKPDMTLEEAVELVKKAIDSAIERDLSSG  172 (189)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHhcCccC
Confidence            999999999999999999998888877654

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6

Probab=99.84  E-value=4.3e-21  Score=167.65  Aligned_cols=148  Identities=11%  Similarity=0.096  Sum_probs=123.6

Q ss_pred             CcCcCcc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-------
Q psy9489          90 SFSTPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------  161 (279)
Q Consensus        90 ~~~~~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------  161 (279)
                      .++++++ +|+|+|||+++||||||+|+|.+. +++..++.+||++|+++++++.||+.+|++.+.+.++...       
T Consensus        20 ya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~-~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~   98 (215)
T cd03754          20 YAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPD-KLIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKY   98 (215)
T ss_pred             hHHHHHhcCCccEEEEEeCCEEEEEEeccccc-cccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHH
Confidence            5677887 588999999999999999999764 5666678999999999999999999999999999998510       


Q ss_pred             --------------------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489         162 --------------------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN  214 (279)
Q Consensus       162 --------------------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG  214 (279)
                                                +|+.....+.|++. +++.|+..|+.|++              ...++.+.|+|
T Consensus        99 ~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~--------------~~~~~~a~G~g  164 (215)
T cd03754          99 GYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYF--------------AGYKATAAGVK  164 (215)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccE--------------EeEEEEEECCC
Confidence                                      13333333448884 57899999999988              66789999999


Q ss_pred             ChhhHHHHHHHHHhhcccc--c--ccccCCCCCHHHHHHHHHHHHh
Q psy9489         215 DYADFQYLNDIVKQKILDD--D--LHNDGFVLKPKSLHSWLTRVLY  256 (279)
Q Consensus       215 ~~aD~~~l~~~l~~~~~~~--~--~~ee~~~l~~~~la~~isr~ly  256 (279)
                      +    +.+..+||++|+++  |  +.+|+.++..+++.+++.|++.
T Consensus       165 s----~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~  206 (215)
T cd03754         165 E----QEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFK  206 (215)
T ss_pred             c----HHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCC
Confidence            9    99999999999984  5  7889999999999888887643

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit

Probab=99.82  E-value=8.3e-20  Score=157.39  Aligned_cols=114  Identities=53%  Similarity=0.971  Sum_probs=105.4

Q ss_pred             ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHH
Q psy9489         166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPK  245 (279)
Q Consensus       166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~  245 (279)
                      +|+|+|||+++|+|++++|++.+++.++.+++.+|||+++++++++.+|..+|++.+.+.++.+.+..+.++++.+++++
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~   80 (197)
T cd03760           1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK   80 (197)
T ss_pred             CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence            47899999999999999999998899999999999999999999999999999999999999887644566778899999


Q ss_pred             HHHHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489         246 SLHSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       246 ~la~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      .+++.+++.+|++|.+++||+|++||||||+ ++|
T Consensus        81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp  115 (197)
T cd03760          81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEP  115 (197)
T ss_pred             HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCE
Confidence            9999999999999888999999999999996 565

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01906 proteasome_protease_HslV proteasome_protease_HslV

Probab=99.82  E-value=5.3e-20  Score=155.88  Aligned_cols=141  Identities=26%  Similarity=0.298  Sum_probs=120.7

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------------  161 (279)
                      ||+|||+++||||||+|+|.+.+..+.+++.+|||+|+++++++++|..+|++.+.+.++...                 
T Consensus         1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~   80 (182)
T cd01906           1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA   80 (182)
T ss_pred             CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            689999999999999999999888888999999999999999999999999999999988510                 


Q ss_pred             --------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHH
Q psy9489         162 --------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV  226 (279)
Q Consensus       162 --------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l  226 (279)
                                    .|......+.|++. .++.|+..|+.|++              ...++.+.|+|+    +++..+|
T Consensus        81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~--------------~~~~~~a~G~g~----~~~~~~L  142 (182)
T cd01906          81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSY--------------IEYKATAIGSGS----QYALGIL  142 (182)
T ss_pred             HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCE--------------eeccEEEECCCc----HHHHHHH
Confidence                          23323333447875 57899999999987              556899999999    9999999


Q ss_pred             HhhcccccccccCCCCCHHHHHHHHHHHHhh
Q psy9489         227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYN  257 (279)
Q Consensus       227 ~~~~~~~~~~ee~~~l~~~~la~~isr~lys  257 (279)
                      ++.|+++++.+|+..+..+++.....++..+
T Consensus       143 ~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~  173 (182)
T cd01906         143 EKLYKPDMTLEEAIELALKALKSALERDLYS  173 (182)
T ss_pred             HHHccCCCCHHHHHHHHHHHHHHHHcccCCC
Confidence            9999999999999888888888888876654

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo

>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type

Probab=99.81  E-value=2.6e-20  Score=163.99  Aligned_cols=152  Identities=13%  Similarity=0.147  Sum_probs=120.6

Q ss_pred             eeecCCCCCCCccccCCCcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCccccccc
Q psy9489          73 KYHDFPNVLPHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY  152 (279)
Q Consensus        73 ~f~~~~~~~~~~~~~~~~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~  152 (279)
                      .||.+|..--  .++...+++++++|+|+|||+++||||||+|++        +++.+||++|+||++|+++|+.+|++.
T Consensus         4 ~~~~~~~~~~--~~~~EYA~kav~~g~T~VGIk~kdgVVLaaek~--------~~~~~KI~~I~d~ig~~~sG~~~D~~~   73 (228)
T TIGR03691         4 PFYVSPEQIM--RDRAELARKGIARGRSVVVLTYADGILFVAENP--------SRSLHKISELYDRIGFAAVGKYNEFEN   73 (228)
T ss_pred             CcccCHHHHH--hhHHHHHHHHHHcCCcEEEEEeCCeEEEEEecC--------CCCcCcEEEecCCEEEEEcCCHHHHHH
Confidence            4666663210  045556788999999999999999999999997        246899999999999999999999999


Q ss_pred             chhhhhc---------ccc----------------------cccceeeE--EEEEe--CCcEEEEEcCCCccCceeeecC
Q psy9489         153 LNDIVKQ---------KIT----------------------PLTTGTSV--LGLVF--NGGVILAADSAGYYGSMMRFND  197 (279)
Q Consensus       153 l~~~l~~---------~~~----------------------pi~~g~tv--lgi~~--~~gvlia~D~~gs~g~li~~~~  197 (279)
                      +++..+.         ...                      ..+.+.++  .|++.  +++.|+.+|+.|++        
T Consensus        74 lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~--------  145 (228)
T TIGR03691        74 LRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSI--------  145 (228)
T ss_pred             HHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCc--------
Confidence            9986663         000                      01133333  37763  46899999999987        


Q ss_pred             CCceEEeccc-EEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHH
Q psy9489         198 CPRIMQINKF-TILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLT  252 (279)
Q Consensus       198 ~~kI~~i~~~-~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~is  252 (279)
                            ...+ +.+.|+|+    +.+..+|+++|+++|+.+|+.++..++|.+.+.
T Consensus       146 ------~~~~~~~aiG~gs----~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~  191 (228)
T TIGR03691       146 ------VDERGFVVMGGTT----EPIATALKESYRDGLSLADALGLAVQALRAGGN  191 (228)
T ss_pred             ------eeccceEEECCCh----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc
Confidence                  5545 79999999    999999999999999999999999999988754

Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.

>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2

Probab=99.80  E-value=2.6e-19  Score=157.59  Aligned_cols=122  Identities=16%  Similarity=0.261  Sum_probs=113.0

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++..+++..|+++||++++||||+++|++.+ ++++.+++.+||++++++++++.+|..+|++.+.+.++.+.. .++
T Consensus        16 QveyA~~av~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~   93 (227)
T cd03750          16 QIEYALAAVSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQ-QYY   93 (227)
T ss_pred             HHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHH-HHH
Confidence            466778899999999999999999999999987 688888899999999999999999999999999999999998 788


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      +.++.+++++.+++.+++.+  |++|+++|||+|++||||||++||
T Consensus        94 ~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~  139 (227)
T cd03750          94 LVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGP  139 (227)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCC
Confidence            88999999999999999988  777888899999999999997665

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit

Probab=99.80  E-value=4.3e-19  Score=152.73  Aligned_cols=111  Identities=23%  Similarity=0.361  Sum_probs=102.5

Q ss_pred             ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHH
Q psy9489         166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPK  245 (279)
Q Consensus       166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~  245 (279)
                      .|+|+|||+++|||++|+|++.+.+..+..++.+|||+++++++++.||..+|++.+.+.++.+.. .++++++.+++++
T Consensus         2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~~~~~~~~~~~   80 (195)
T cd03759           2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVN-LYRLREEREIKPK   80 (195)
T ss_pred             CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHH-HHHHHhCCCCCHH
Confidence            588999999999999999999888776777889999999999999999999999999999999988 7888899999999


Q ss_pred             HHHHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489         246 SLHSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       246 ~la~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      .+++.+++.+|++|  ++||+|++||||||+ ++|
T Consensus        81 ~la~~l~~~ly~~r--~~P~~v~~ii~G~D~~~~p  113 (195)
T cd03759          81 TFSSLISSLLYEKR--FGPYFVEPVVAGLDPDGKP  113 (195)
T ss_pred             HHHHHHHHHHHHhc--CCCceEEEEEEEEcCCCCE
Confidence            99999999999987  679999999999995 445

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0176|consensus

Probab=99.80  E-value=8.2e-20  Score=152.35  Aligned_cols=148  Identities=16%  Similarity=0.176  Sum_probs=127.5

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhc--------cc
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ--------KI  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~--------~~  161 (279)
                      ++.++++.|+|+|||+.++|||||+++|.+ +.+..+..++||++|++||+|++||+.||++.+++..+-        ..
T Consensus        26 YaieAikLGsTaIGv~TkEgVvL~vEKrit-SpLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~  104 (241)
T KOG0176|consen   26 YAIEAIKLGSTAIGVKTKEGVVLAVEKRIT-SPLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYG  104 (241)
T ss_pred             hHHHHHhcCCceeeeeccceEEEEEecccc-CcccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecC
Confidence            567899999999999999999999999955 899999999999999999999999999999999998873        00


Q ss_pred             ccc----------------------------cceeeEE--EEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEE
Q psy9489         162 TPL----------------------------TTGTSVL--GLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG  211 (279)
Q Consensus       162 ~pi----------------------------~~g~tvl--gi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~  211 (279)
                      +++                            ++|..+|  |++.+++.++..||.|++              +..+.-+.
T Consensus       105 e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf--------------~~~~AKAI  170 (241)
T KOG0176|consen  105 EPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTF--------------IRYKAKAI  170 (241)
T ss_pred             CcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCce--------------EEecceec
Confidence            111                            1444444  888889999999999998              77778889


Q ss_pred             eccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHh
Q psy9489         212 AGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLY  256 (279)
Q Consensus       212 gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~ly  256 (279)
                      |||+    .-+.+.|+++|+++++++|+..+....|...+..-+-
T Consensus       171 GSgs----Ega~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~  211 (241)
T KOG0176|consen  171 GSGS----EGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLN  211 (241)
T ss_pred             cccc----hHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcC
Confidence            9999    8889999999999999999999988888888876553

>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit

Probab=99.79  E-value=7.2e-19  Score=153.30  Aligned_cols=111  Identities=24%  Similarity=0.380  Sum_probs=104.3

Q ss_pred             ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHH
Q psy9489         166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPK  245 (279)
Q Consensus       166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~  245 (279)
                      .|+|+|||+++|||++|+|++.+++.++..++.+||+++++++++++||..+|++.+.+.++.+.+ .++++++.+++++
T Consensus         7 ~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~-~~~~~~g~~i~~~   85 (212)
T cd03757           7 NGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIK-MYKYSHNKEMSTE   85 (212)
T ss_pred             CCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHH-HHhHHhCCCCCHH
Confidence            789999999999999999999999888888999999999999999999999999999999999987 7888899999999


Q ss_pred             HHHHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489         246 SLHSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       246 ~la~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      .+++.+++.+|++|  ++||+|++||||||+ ++|
T Consensus        86 ~la~~ls~~ly~~R--~~P~~~~~iiaG~D~~~~p  118 (212)
T cd03757          86 AIAQLLSTILYSRR--FFPYYVFNILAGIDEEGKG  118 (212)
T ss_pred             HHHHHHHHHHHhhc--CCCeEEEEEEEEEcCCCCE
Confidence            99999999999987  689999999999995 444

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit

Probab=99.79  E-value=1.1e-18  Score=149.42  Aligned_cols=109  Identities=22%  Similarity=0.338  Sum_probs=103.1

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +|+||++++|||++++|++.+++.++.+++.+|||+++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++++
T Consensus         1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~y~~~~~~~i~~~~l   79 (188)
T cd03761           1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECR-LYELRNKERISVAAA   79 (188)
T ss_pred             CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHH
Confidence            4789999999999999999999889999999999999999999999999999999999999998 788889999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++.+++.+|++|  ..||+|++||||||++||
T Consensus        80 a~~ls~~l~~~~--~~~~~v~~li~G~D~~g~  109 (188)
T cd03761          80 SKLLSNMLYQYK--GMGLSMGTMICGWDKTGP  109 (188)
T ss_pred             HHHHHHHHHhcC--CCCeEEEEEEEEEeCCCC
Confidence            999999999987  569999999999998776

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit

Probab=99.79  E-value=1.2e-18  Score=148.64  Aligned_cols=110  Identities=25%  Similarity=0.427  Sum_probs=103.3

Q ss_pred             eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHH
Q psy9489         167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKS  246 (279)
Q Consensus       167 g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~  246 (279)
                      |+++||+++++||++++|++.++++++..++.+|||+++++++++.||..+|++.+.+.++.+.+ .++.+++.+++++.
T Consensus         1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~   79 (185)
T TIGR03634         1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAK-LYELRRGRPMSVKA   79 (185)
T ss_pred             CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHH
Confidence            57899999999999999999998999999999999999999999999999999999999999887 67778899999999


Q ss_pred             HHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         247 LHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       247 la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      +++++++.+|..+  ++||+|++||||||++||
T Consensus        80 ~a~~l~~~~~~~~--~rP~~v~~ivaG~d~~g~  110 (185)
T TIGR03634        80 LATLLSNILNSNR--FFPFIVQLLVGGVDEEGP  110 (185)
T ss_pred             HHHHHHHHHHhcC--CCCeEEEEEEEEEeCCCC
Confidence            9999999999875  889999999999998766

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3

Probab=99.78  E-value=9.4e-19  Score=152.58  Aligned_cols=122  Identities=16%  Similarity=0.222  Sum_probs=110.0

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++.++++..|+++|||+++||||+|+|++.+. .+...++.+||+++++++++++||..+|++.+.+.++.+.+ .++
T Consensus        19 Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~y~   96 (212)
T cd03751          19 QVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAE-NYR   96 (212)
T ss_pred             HHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHH-HHH
Confidence            4567778889999999999999999999999865 67777789999999999999999999999999999999987 788


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++++.+++++.+++.+++.+  |++++++|||+|++||||||++||
T Consensus        97 ~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp  142 (212)
T cd03751          97 DNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGP  142 (212)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcC
Confidence            88999999999999999976  566667889999999999997666

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PTZ00488 Proteasome subunit beta type-5; Provisional

Probab=99.78  E-value=2.2e-18  Score=153.41  Aligned_cols=117  Identities=18%  Similarity=0.290  Sum_probs=108.1

Q ss_pred             ccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccC
Q psy9489         160 KITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDG  239 (279)
Q Consensus       160 ~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~  239 (279)
                      +.-|++.|+|+|||+++||||+++|++.+++.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++
T Consensus        32 ~~~~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~-~y~~~~g  110 (247)
T PTZ00488         32 KAIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCR-LYELRNG  110 (247)
T ss_pred             cccccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHH-HHHHHHC
Confidence            334788999999999999999999999999999999999999999999999999999999999999999987 7888899


Q ss_pred             CCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         240 FVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       240 ~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      .+++++.+++.+++.+|++|  ..|+.+++||||||++||
T Consensus       111 ~~isv~~la~~ls~~l~~~R--~~~~~v~~iiaG~D~~gp  148 (247)
T PTZ00488        111 ELISVAAASKILANIVWNYK--GMGLSMGTMICGWDKKGP  148 (247)
T ss_pred             CCCCHHHHHHHHHHHHHhcC--CCCeeEEEEEEEEeCCCC
Confidence            99999999999999999988  457778899999997766

>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7

Probab=99.78  E-value=1.5e-18  Score=150.79  Aligned_cols=122  Identities=14%  Similarity=0.218  Sum_probs=110.7

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++..+++..|+++||++++|+|++++|++.+ ..++..++.+||++++++++++.||..+|++.+.+.++.+.+ .++
T Consensus        16 Qveya~~av~~G~t~Igik~~dgVvlaad~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~   93 (207)
T cd03755          16 QVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSV-AKLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQ-SHR   93 (207)
T ss_pred             HHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCC-CcccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHH-HHH
Confidence            466777889999999999999999999999854 357777789999999999999999999999999999999998 788


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeC-CCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      ++++.+++++.+++.+++.+  |++|.++|||+|++||||||+ ++|
T Consensus        94 ~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p  140 (207)
T cd03755          94 LTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTP  140 (207)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCe
Confidence            88999999999999999999  788888999999999999995 465

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit

Probab=99.78  E-value=1.3e-18  Score=153.75  Aligned_cols=140  Identities=16%  Similarity=0.213  Sum_probs=112.5

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEec----CceEeeecCcccccccchhhhhcc--------cc-cc-
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN----KFTILGAGNDYADFQYLNDIVKQK--------IT-PL-  164 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~----~~~~~~~sG~~aD~~~l~~~l~~~--------~~-pi-  164 (279)
                      |=+|||+++||||||||+|.+.+ ++..++.+||++|+    +|++|+.||..||+|.+.+.++.+        .+ ++ 
T Consensus         1 ~~~vGIk~kdGVVLaadkr~~~~-l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~   79 (236)
T cd03765           1 TYCLGIKLDAGLVFASDSRTNAG-VDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT   79 (236)
T ss_pred             CeEEEEEeCCeEEEEEccCccCC-CccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence            34799999999999999997655 44445899999998    899999999999999999988751        11 11 


Q ss_pred             ----------------------------cceeeEE--EEE-eCCcEEEEEcCCCccCceeeecCCCceEEecc----cEE
Q psy9489         165 ----------------------------TTGTSVL--GLV-FNGGVILAADSAGYYGSMMRFNDCPRIMQINK----FTI  209 (279)
Q Consensus       165 ----------------------------~~g~tvl--gi~-~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~----~~~  209 (279)
                                                  ..+.++|  |++ .+++.|+.+|+.|++              ++.    ++.
T Consensus        80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~--------------~e~~a~~~~~  145 (236)
T cd03765          80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNF--------------IEATPDTPFL  145 (236)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCE--------------EeecCCCcee
Confidence                                        1233333  776 457899999999987              332    445


Q ss_pred             EEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         210 LGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       210 ~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      +.| |+    +++..+|+++|+++|+++|+.++..++|.+.+.|+..+.
T Consensus       146 AiG-~~----~~a~~~Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg  189 (236)
T cd03765         146 QIG-ET----KYGKPILDRVITPDTSLEDAAKCALVSMDSTMRSNLSVG  189 (236)
T ss_pred             eeC-Cc----hhhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            666 45    889999999999999999999999999999999988764

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit

Probab=99.78  E-value=2.8e-18  Score=146.68  Aligned_cols=109  Identities=24%  Similarity=0.382  Sum_probs=102.4

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +|+||++++|||++++|++.++|+++.+++.+||+.++++++++.+|..+|++.+.+.++.+.+ .+..+++.+++++++
T Consensus         1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~l   79 (188)
T cd03764           1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEAR-LYELRRGRPMSIKAL   79 (188)
T ss_pred             CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999999887 778888999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++.+++.+|..|  ++||+|++||||||+++|
T Consensus        80 ~~~i~~~~~~~~--~~P~~~~~lvaG~d~~~~  109 (188)
T cd03764          80 ATLLSNILNSSK--YFPYIVQLLIGGVDEEGP  109 (188)
T ss_pred             HHHHHHHHHhcC--CCCcEEEEEEEEEeCCCC
Confidence            999999999876  789999999999998665

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=2.1e-18  Score=152.66  Aligned_cols=120  Identities=22%  Similarity=0.292  Sum_probs=107.8

Q ss_pred             cccccccc-eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccc
Q psy9489         159 QKITPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHN  237 (279)
Q Consensus       159 ~~~~pi~~-g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~e  237 (279)
                      +..+++.. |+|+||++++||||+++|++.+++.++..++.+|||++++|++++.||..+|++.+.++++.+.+ .+++.
T Consensus        21 ~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~-~~~~~   99 (236)
T COG0638          21 YALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQ-LYRLR   99 (236)
T ss_pred             HHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHH-HHHHH
Confidence            34445555 49999999999999999999999989999999999999999999999999999999999998887 78888


Q ss_pred             cCCCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         238 DGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       238 e~~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++.+++++.+++.+++.++..+...+||+|+++|||+|+++|
T Consensus       100 ~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p  141 (236)
T COG0638         100 YGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGP  141 (236)
T ss_pred             hCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcCCCC
Confidence            999999999999999999877633589999999999998665

>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal

Probab=99.77  E-value=2.7e-18  Score=149.48  Aligned_cols=122  Identities=20%  Similarity=0.267  Sum_probs=111.0

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++..+++..|+++||+++++||++++|++.+ +.++..++.+||++++++++++.||..+|++.+.+.++.+.+ .+.
T Consensus        17 Q~eya~~av~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~-~~~   94 (211)
T cd03756          17 QVEYAREAVKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQ-IHR   94 (211)
T ss_pred             HHHHHHHHHHcCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHH-HHH
Confidence            566778889999999999999999999999976 577778899999999999999999999999999999999888 788


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++++.+++++.+++.+++.+  |++++++|||+|++||||||+++|
T Consensus        95 ~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~  140 (211)
T cd03756          95 LTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGP  140 (211)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCC
Confidence            88899999999999999987  566667899999999999998665

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit

Probab=99.77  E-value=3.1e-18  Score=150.45  Aligned_cols=122  Identities=19%  Similarity=0.276  Sum_probs=110.6

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++..+++..|+++||++++++||+++|++.+ ++++..++.+||++++++++++.||..+|++.+.+.++.+.. .+.
T Consensus        18 Qieya~~av~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~   95 (224)
T TIGR03633        18 QVEYAREAVKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQ-INR   95 (224)
T ss_pred             HHHHHHHHHHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHH-HHH
Confidence            466777889999999999999999999999986 677778899999999999999999999999999999998887 677


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++++.+++++.+++.+++.+  |+++++.|||+|++||||+|+++|
T Consensus        96 ~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~  141 (224)
T TIGR03633        96 LTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGP  141 (224)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcC
Confidence            88899999999999999987  566667889999999999998765

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit

Probab=99.76  E-value=6.3e-18  Score=145.29  Aligned_cols=110  Identities=22%  Similarity=0.360  Sum_probs=100.7

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +|++|++++|||++++|++.+++.++.+++.+|||+++++++++.||..+|++.+.+.++.+.. .++++++.+++++.+
T Consensus         2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~-~~~~~~~~~i~~~~l   80 (193)
T cd03758           2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQ-LYKMRNGYELSPKAA   80 (193)
T ss_pred             ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999999988 688889999999999


Q ss_pred             HHHHHHHHhh-ccCCCCccceEEEEEEEeC-CCC
Q psy9489         248 HSWLTRVLYN-RRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       248 a~~isr~lys-~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      ++.+++.++. .|.+ +||++++||||||+ ++|
T Consensus        81 a~~l~~~~~~~~~~~-rP~~~~~li~G~d~~~~p  113 (193)
T cd03758          81 ANFTRRELAESLRSR-TPYQVNLLLAGYDKVEGP  113 (193)
T ss_pred             HHHHHHHHHHHhhcC-CCeEEEEEEEEEcCCCCc
Confidence            9999999853 3433 79999999999995 566

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01911 proteasome_alpha proteasome alpha subunit

Probab=99.75  E-value=6.5e-18  Score=146.86  Aligned_cols=122  Identities=16%  Similarity=0.238  Sum_probs=109.4

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++..+++..|+++||+++++||++++|++.+. +++..++.+||++++++++++.||..+|++.+.+.++.... .+.
T Consensus        16 q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~-~~~   93 (209)
T cd01911          16 QVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTS-KLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQ-NYR   93 (209)
T ss_pred             HHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCc-cccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHH-HHH
Confidence            4566678888999999999999999999999875 56667899999999999999999999999999999999887 678


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCC-CC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNG-EP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~-~p  279 (279)
                      ++++.+++++.+++.+++.+  |++|.+.||++|++||||||++ +|
T Consensus        94 ~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~  140 (209)
T cd01911          94 YTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGP  140 (209)
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCc
Confidence            88899999999999999987  6777778899999999999964 55

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.

>PRK03996 proteasome subunit alpha; Provisional

Probab=99.75  E-value=8.6e-18  Score=149.22  Aligned_cols=122  Identities=19%  Similarity=0.266  Sum_probs=110.4

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++..+++..|+++||+++++|||+++|++.+ ++++..++.+||+.++++++++.||..+|++.+.+.++.+.. .+.
T Consensus        25 Q~eya~~av~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~  102 (241)
T PRK03996         25 QVEYAREAVKRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQ-INR  102 (241)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHH-HHH
Confidence            456677888999999999999999999999987 677778899999999999999999999999999999998887 677


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      +.++.+++++.+++.+++.+  |+++++.|||+|++||||||++||
T Consensus       103 ~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp  148 (241)
T PRK03996        103 LTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGP  148 (241)
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcC
Confidence            78889999999999999987  566667889999999999998665

>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit

Probab=99.75  E-value=1.7e-17  Score=141.82  Aligned_cols=108  Identities=23%  Similarity=0.249  Sum_probs=100.9

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +|++|++++|||++++|++.++|.++.+++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++.++.+++++.+
T Consensus         1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~-~~~~~~~~~~~~~~~   79 (188)
T cd03762           1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLD-MHSIELGEPPLVKTA   79 (188)
T ss_pred             CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHH-HhHHhhCCCCCHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999999988 788889999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      ++.+++.+|.+|   +||+|++||||||+ ++|
T Consensus        80 a~~l~~~~~~~~---~~~~~~~ii~G~d~~~gp  109 (188)
T cd03762          80 ASLFKNLCYNYK---EMLSAGIIVAGWDEQNGG  109 (188)
T ss_pred             HHHHHHHHHhcc---ccceeeEEEEEEcCCCCc
Confidence            999999999876   68999999999995 555

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type

Probab=99.74  E-value=2.1e-17  Score=144.80  Aligned_cols=109  Identities=17%  Similarity=0.306  Sum_probs=101.4

Q ss_pred             eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHH
Q psy9489         167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKS  246 (279)
Q Consensus       167 g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~  246 (279)
                      |+|+||++++|||++++|++.++|+++.+++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.
T Consensus         2 G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~-~~~~~~~~~i~~~~   80 (219)
T TIGR03690         2 GTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELE-HYEKIEGVPLTLDG   80 (219)
T ss_pred             CcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999988 78888999999999


Q ss_pred             HHHHHHHHHhhc-cCCCCccceEEEEEEEeC
Q psy9489         247 LHSWLTRVLYNR-RSQFDPLWINAFVAGMQN  276 (279)
Q Consensus       247 la~~isr~lys~-r~~~~P~~vs~ii~G~D~  276 (279)
                      +++.+++.++.. ...++||+|++||||||+
T Consensus        81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~  111 (219)
T TIGR03690        81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDL  111 (219)
T ss_pred             HHHHHHHHHHhhhhhccCCceEEEEEEEECC
Confidence            999999999753 224789999999999995

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.

>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6

Probab=99.74  E-value=1.5e-17  Score=145.33  Aligned_cols=122  Identities=10%  Similarity=0.126  Sum_probs=108.3

Q ss_pred             hhhcccccccc-eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccc
Q psy9489         156 IVKQKITPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDD  234 (279)
Q Consensus       156 ~l~~~~~pi~~-g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~  234 (279)
                      .+++.++++.. |+++||++++|+|++++|++.+. +++..++.+||++++++++++.||..+|++.+.+.++.+.+ .+
T Consensus        17 Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~-~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~   94 (215)
T cd03754          17 QVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPD-KLIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAA-EF   94 (215)
T ss_pred             HHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccc-cccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHH-HH
Confidence            45666778764 77999999999999999999765 56666688999999999999999999999999999999998 78


Q ss_pred             ccccCCCCCHHHHHHHHHHH--HhhccCCCCccceEEEEEEEeC-CCC
Q psy9489         235 LHNDGFVLKPKSLHSWLTRV--LYNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       235 ~~ee~~~l~~~~la~~isr~--lys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      +++++.+++++.+++.+++.  +|++|.+.|||+|++||||||+ +||
T Consensus        95 ~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp  142 (215)
T cd03754          95 KYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGP  142 (215)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCe
Confidence            89999999999999999986  6888877889999999999995 565

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0180|consensus

Probab=99.74  E-value=2.5e-18  Score=140.66  Aligned_cols=157  Identities=19%  Similarity=0.135  Sum_probs=117.3

Q ss_pred             CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc-----------ccccc
Q psy9489          97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK-----------ITPLT  165 (279)
Q Consensus        97 ~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~-----------~~pi~  165 (279)
                      +|++++|+++|+||.||+|.|....+...+.+.+|||+|.|++++|.+|++.|.|.+.+.++.+           ++|-.
T Consensus         7 nGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~   86 (204)
T KOG0180|consen    7 NGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPET   86 (204)
T ss_pred             cCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHH
Confidence            8999999999999999999999888888999999999999999999999999999999999862           23322


Q ss_pred             ------------------ceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHH
Q psy9489         166 ------------------TGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV  226 (279)
Q Consensus       166 ------------------~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l  226 (279)
                                        ....+.|+... .+-+.+.|..|+.             ...+.+++.|+++    .++++.+
T Consensus        87 ~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~-------------~~~~DFVvsGTa~----e~L~GmC  149 (204)
T KOG0180|consen   87 FSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCI-------------DAPKDFVVSGTAS----EQLYGMC  149 (204)
T ss_pred             HHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCc-------------CccCCeEEecchH----HHHHHHH
Confidence                              22333355433 3445556777654             3567899999999    9999999


Q ss_pred             HhhcccccccccCCCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeC
Q psy9489         227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN  276 (279)
Q Consensus       227 ~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~  276 (279)
                      |..|+|+|+.++-.+-..+++.+++.|+..|      .+++.+-|.+-|+
T Consensus       150 E~ly~pnmepd~LFetisQa~Lna~DRDalS------GwGa~vyiI~kdk  193 (204)
T KOG0180|consen  150 EALYEPNMEPDELFETISQALLNAVDRDALS------GWGAVVYIITKDK  193 (204)
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHhHhhhhhhc------cCCeEEEEEccch
Confidence            9999986555444444444444444444443      5777666666553

>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4

Probab=99.74  E-value=1.7e-17  Score=144.74  Aligned_cols=123  Identities=15%  Similarity=0.156  Sum_probs=109.6

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++..+++..|+++||++++++|++++|++.+.+.++..++.+||++++++++++.||..+|++.+.+.++.+.. .++
T Consensus        18 Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~   96 (213)
T cd03752          18 QVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQ-RYL   96 (213)
T ss_pred             HHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHH-HHH
Confidence            4566778889999999999999999999999887766666799999999999999999999999999999999998 788


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeC-CCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      ++++.+++++.+++.++..+  |++..+.|||+|++||+|||+ +||
T Consensus        97 ~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~  143 (213)
T cd03752          97 YSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGF  143 (213)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCC
Confidence            88999999999999998865  665556789999999999995 454

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1

Probab=99.74  E-value=1.7e-17  Score=144.49  Aligned_cols=120  Identities=16%  Similarity=0.174  Sum_probs=106.0

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++.++++..|+++|||+++|+|++++|++.+. .+  .++.+||++++++++++.||..+|++.+.+.++.+.+ .++
T Consensus        16 Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~-~l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~   91 (211)
T cd03749          16 QVEYAMEAVKQGSATVGLKSKTHAVLVALKRATS-EL--SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECL-NYR   91 (211)
T ss_pred             HHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCcc-cc--CCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHH-HHH
Confidence            3566778888999999999999999999998654 33  3466999999999999999999999999999999998 789


Q ss_pred             cccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeCCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++++.+++++.+++.+++.++  +++.+.|||+|+++|+|||++||
T Consensus        92 ~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp  137 (211)
T cd03749          92 FVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGP  137 (211)
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCC
Confidence            999999999999999998764  45666789999999999998666

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0179|consensus

Probab=99.73  E-value=1.5e-17  Score=139.95  Aligned_cols=116  Identities=22%  Similarity=0.377  Sum_probs=109.4

Q ss_pred             cccccc-ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccccc
Q psy9489         160 KITPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHND  238 (279)
Q Consensus       160 ~~~pi~-~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee  238 (279)
                      +..|+. +|.|+++|...|+.|+|.|++.+.|..+..++.+|||++.+++++++||.+||...+...++.+.+ .|..++
T Consensus        21 ~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~-~Y~~~h   99 (235)
T KOG0179|consen   21 RFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIK-QYEHDH   99 (235)
T ss_pred             cCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHH-HHhhcc
Confidence            456765 788999999999999999999999999999999999999999999999999999999999999999 788888


Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCC
Q psy9489         239 GFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE  278 (279)
Q Consensus       239 ~~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~  278 (279)
                      ..+|++.++|+.+++.||++|  |+||++..||+|+|++|
T Consensus       100 ~k~ms~~s~A~lls~~LY~kR--FFPYYv~~ilaGiDeeG  137 (235)
T KOG0179|consen  100 NKKMSIHSAAQLLSTILYSKR--FFPYYVFNILAGIDEEG  137 (235)
T ss_pred             cccccHHHHHHHHHHHHhhcc--cccceeeeeeecccccC
Confidence            999999999999999999999  99999999999999854

>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit

Probab=99.73  E-value=4e-17  Score=139.75  Aligned_cols=108  Identities=19%  Similarity=0.314  Sum_probs=100.7

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +++|||+++|||++++|++.+++.++..++.+|||+++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus         1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~~   79 (189)
T cd03763           1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLE-LHRLNTGRKPRVVTA   79 (189)
T ss_pred             CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHH
Confidence            4789999999999999999999989999999999999999999999999999999999999988 778888999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++++++.+|..+   .|++|++||||||++||
T Consensus        80 a~~l~~~l~~~~---~p~~v~~ivaG~d~~g~  108 (189)
T cd03763          80 LTMLKQHLFRYQ---GHIGAALVLGGVDYTGP  108 (189)
T ss_pred             HHHHHHHHHHcC---CccceeEEEEeEcCCCC
Confidence            999999998764   49999999999997766

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5

Probab=99.73  E-value=3e-17  Score=143.14  Aligned_cols=122  Identities=17%  Similarity=0.241  Sum_probs=108.1

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++..+++..|+++||+++++||++++|++.+. +++..++.+||+.++++++++.||..+|++.+.+.++.+.+ .+.
T Consensus        16 Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~   93 (213)
T cd03753          16 QVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQ-NHR   93 (213)
T ss_pred             HHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHH-HHH
Confidence            4566778889999999999999999999999875 66777889999999999999999999999999999999888 678


Q ss_pred             cccCCCCCHHHHHHHHHHHHhh--cc-----CCCCccceEEEEEEEeCCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVLYN--RR-----SQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~lys--~r-----~~~~P~~vs~ii~G~D~~~p  279 (279)
                      +.++.+++++.+++.+++.++.  ++     ...+||+|++||||||++||
T Consensus        94 ~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp  144 (213)
T cd03753          94 FTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGP  144 (213)
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCC
Confidence            8889999999999999998864  32     22589999999999998776

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PTZ00246 proteasome subunit alpha; Provisional

Probab=99.72  E-value=3e-17  Score=146.79  Aligned_cols=123  Identities=15%  Similarity=0.116  Sum_probs=108.6

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++.++++..|+++||++++|+||+++|++.+.+.++..++.+||++++++++++.+|..+|++.+.+.++.+.. .+.
T Consensus        20 QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~   98 (253)
T PTZ00246         20 QVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQ-RYR   98 (253)
T ss_pred             HHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHH-HHH
Confidence            4567778899999999999999999999999988777777789999999999999999999999999999998877 567


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeC-CCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      ++.+.+++++.+++.++..+  |++++++|||+|++||||||+ ++|
T Consensus        99 ~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp  145 (253)
T PTZ00246         99 YTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGY  145 (253)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCc
Confidence            77788899999999988765  566677899999999999994 555

>cd01912 proteasome_beta proteasome beta subunit

Probab=99.71  E-value=1.3e-16  Score=136.28  Aligned_cols=109  Identities=28%  Similarity=0.467  Sum_probs=101.2

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +++||+++++||++|+|++.+++.....++.+|||+++++++++.+|..+|++.+.+.++.+.. .++.+++.+++++.+
T Consensus         1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~l   79 (189)
T cd01912           1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLR-LYELRNGRELSVKAA   79 (189)
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHH
Confidence            4789999999999999999999888778999999999999999999999999999999999998 788888999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      ++.+++.+|.+|.  +||++++||||+|+ ++|
T Consensus        80 ~~~l~~~~~~~~~--~P~~~~~iv~G~d~~~~~  110 (189)
T cd01912          80 ANLLSNILYSYRG--FPYYVSLIVGGVDKGGGP  110 (189)
T ss_pred             HHHHHHHHHhcCC--CCeEEEEEEEEEcCCCCe
Confidence            9999999998873  79999999999996 555

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01906 proteasome_protease_HslV proteasome_protease_HslV

Probab=99.69  E-value=3e-16  Score=132.82  Aligned_cols=111  Identities=24%  Similarity=0.321  Sum_probs=101.5

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +++||+++++|+++++|++.+.+.....++.+|||.++++++++.+|..+|++.+.+.++.+.. .+..+++.+++++.+
T Consensus         1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~l   79 (182)
T cd01906           1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQ-LYRLRYGEPIPVEAL   79 (182)
T ss_pred             CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHH
Confidence            4789999999999999999998877778999999999999999999999999999999999998 677888999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      ++.+++.++..|...+|+++++++||+|+ ++|
T Consensus        80 ~~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~  112 (182)
T cd01906          80 AKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGP  112 (182)
T ss_pred             HHHHHHHHHHhCCCccChheEEEEEEEeCCCCc
Confidence            99999999877644689999999999996 555

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo

>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins

Probab=99.67  E-value=3.7e-16  Score=133.17  Aligned_cols=113  Identities=30%  Similarity=0.455  Sum_probs=98.0

Q ss_pred             cceeeEEEEEeCCcEEEEEcCCCccCceeeecC-CCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCC
Q psy9489         165 TTGTSVLGLVFNGGVILAADSAGYYGSMMRFND-CPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLK  243 (279)
Q Consensus       165 ~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~-~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~  243 (279)
                      ..|++++|+++++++++++|++.++|+.+..++ .+||++++++++++.||..+|++.+.+.++.+.+ .+++.++.+++
T Consensus         2 ~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~-~~~~~~~~~~~   80 (190)
T PF00227_consen    2 NNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQ-EYRFSYGRPIS   80 (190)
T ss_dssp             HTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHH-HHHHHHSSGTC
T ss_pred             CCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccch-hhhhccCcccc
Confidence            478999999999999999999999888887766 6999999999999999999999999999999998 78888999999


Q ss_pred             HHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCC
Q psy9489         244 PKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGE  278 (279)
Q Consensus       244 ~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~  278 (279)
                      ++.+++.+.+.+  +.++.+++|+++++++||||+.+
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~  117 (190)
T PF00227_consen   81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDG  117 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTT
T ss_pred             chhhhhhhHHHHhhhcccccccCccccceeeeecccc
Confidence            996666666544  22334478999999999999653

They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....

>KOG0174|consensus

Probab=99.65  E-value=3.8e-16  Score=130.17  Aligned_cols=111  Identities=23%  Similarity=0.292  Sum_probs=105.6

Q ss_pred             ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCC
Q psy9489         162 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFV  241 (279)
Q Consensus       162 ~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~  241 (279)
                      .++++|++++++.|++||++++|++.+.|.++.++-.+|+.++.++++++-||+.||.|.+.++++.+.. .|+.+++.+
T Consensus        14 ~evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~-~~~~q~~~~   92 (224)
T KOG0174|consen   14 EEVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLE-LYTIQENKP   92 (224)
T ss_pred             cccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHH-HhhhhcCCC
Confidence            4688999999999999999999999999999999999999999999999999999999999999999888 899999999


Q ss_pred             CCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeC
Q psy9489         242 LKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN  276 (279)
Q Consensus       242 l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~  276 (279)
                      ..+...++.+++..|..|   ..+..++|+||||+
T Consensus        93 p~v~~aA~l~r~~~Y~~r---e~L~AgliVAGwD~  124 (224)
T KOG0174|consen   93 PLVHTAASLFREICYNYR---EMLSAGLIVAGWDE  124 (224)
T ss_pred             chHHHHHHHHHHHHHhCH---HhhhcceEEeeccc
Confidence            999999999999999988   45899999999996

>KOG0177|consensus

Probab=99.63  E-value=9.4e-16  Score=127.39  Aligned_cols=142  Identities=15%  Similarity=0.173  Sum_probs=120.6

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcccc-----------c----
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKIT-----------P----  163 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~~-----------p----  163 (279)
                      .|++||+++|+|++||||..+.+.++...+.+|++++++++++.++|..+|+.++.+.+.+++.           |    
T Consensus         2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa   81 (200)
T KOG0177|consen    2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA   81 (200)
T ss_pred             ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence            4799999999999999999999999999999999999999999999999999999999987431           1    


Q ss_pred             ----------------ccceeeEE-EEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHH
Q psy9489         164 ----------------LTTGTSVL-GLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI  225 (279)
Q Consensus       164 ----------------i~~g~tvl-gi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~  225 (279)
                                      +.. ..++ |.+-+ ++-+...|..++.              ..-++++.|.|+    .+..++
T Consensus        82 hFtR~~La~~LRsr~~yqV-~~LvaGYd~~~gp~L~~iDyla~~--------------~~vpy~~hGy~~----~f~~sI  142 (200)
T KOG0177|consen   82 HFTRRELAESLRSRTPYQV-NILVAGYDPEEGPELYYIDYLATL--------------VSVPYAAHGYGS----YFCLSI  142 (200)
T ss_pred             HHHHHHHHHHHhcCCCceE-EEEEeccCCCCCCceeeehhhhhc--------------ccCCcccccchh----hhhHHH
Confidence                            111 1222 55433 5577788888865              556788899999    999999


Q ss_pred             HHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       226 l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      ++++|+++|+.++|.++..+++.+.-+|++...+
T Consensus       143 lDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~  176 (200)
T KOG0177|consen  143 LDRYYKPDMTIEEALDLMKKCVLELKKRLVINLP  176 (200)
T ss_pred             HHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence            9999999999999999999999999999888765

>KOG0176|consensus

Probab=99.61  E-value=2e-15  Score=126.20  Aligned_cols=121  Identities=17%  Similarity=0.241  Sum_probs=108.6

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH  236 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~  236 (279)
                      +++.++++..|+|.||++.++||+++++++.++ +++.+.++.||+.+++|+.|+.||..+|++.+++..+.+.+ ++.+
T Consensus        24 VEYaieAikLGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~q-nh~f  101 (241)
T KOG0176|consen   24 VEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQ-NHWF  101 (241)
T ss_pred             hhhHHHHHhcCCceeeeeccceEEEEEeccccC-cccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhh-hcee
Confidence            456778999999999999999999999999765 89999999999999999999999999999999999999998 8888


Q ss_pred             ccCCCCCHHHHHHHHHHHHhh-------ccCCCCccceEEEEEEEeCCCC
Q psy9489         237 NDGFVLKPKSLHSWLTRVLYN-------RRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       237 ee~~~l~~~~la~~isr~lys-------~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      -++++++++.+..+++.+...       .+.-.|||+|+++|||+|++||
T Consensus       102 ~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gp  151 (241)
T KOG0176|consen  102 TYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGP  151 (241)
T ss_pred             ecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCc
Confidence            899999999999999987631       2223479999999999998776

>KOG0184|consensus

Probab=99.61  E-value=8.9e-15  Score=124.36  Aligned_cols=160  Identities=13%  Similarity=0.126  Sum_probs=119.9

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc--------c
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------I  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------~  161 (279)
                      .+..++.+++|+||||+|||||+++|+..+ +.+..++..+||+.|++|++++++|+.+|.+++....+..        .
T Consensus        26 YA~KAven~~T~IGIk~kdGVVl~vEKli~-SkLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~  104 (254)
T KOG0184|consen   26 YAQKAVENSGTCIGIKCKDGVVLAVEKLIT-SKLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYG  104 (254)
T ss_pred             HHHHHHhcCCcEEEEecCCeEEEEEeeeec-ccccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcC
Confidence            456699999999999999999999999955 8888889999999999999999999999999999888741        1


Q ss_pred             cccc-----------------------ceeeE-E-EEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         162 TPLT-----------------------TGTSV-L-GLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       162 ~pi~-----------------------~g~tv-l-gi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                      .|++                       +|.+. + +.+-+++.|+-.|+.|.+              ...+-++.|-|. 
T Consensus       105 ~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~--------------~~Y~~aaiGKgr-  169 (254)
T KOG0184|consen  105 DPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSS--------------YGYKGAAIGKGR-  169 (254)
T ss_pred             CCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCc--------------cceeeeeccchh-
Confidence            1221                       23332 2 556567899999999977              566778888888 


Q ss_pred             hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhccC--CCCccceEEEEEEEeC
Q psy9489         217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRS--QFDPLWINAFVAGMQN  276 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r~--~~~P~~vs~ii~G~D~  276 (279)
                         |.+...|++.-.        ..|+.+.+.....+.+|-.+.  +-.-|-..+-++|...
T Consensus       170 ---q~aKtElEKL~~--------~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eT  220 (254)
T KOG0184|consen  170 ---QAAKTELEKLKI--------DEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEET  220 (254)
T ss_pred             ---HHHHHHHHhccc--------ccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeec
Confidence               777777664333        278888999888999874321  1123445555555543

>KOG0175|consensus

Probab=99.58  E-value=5.7e-15  Score=127.94  Aligned_cols=113  Identities=21%  Similarity=0.359  Sum_probs=107.8

Q ss_pred             ccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCC
Q psy9489         164 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLK  243 (279)
Q Consensus       164 i~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~  243 (279)
                      +..|+|.||+++++|||+|+|++.+.|+++....+.||..|+++..-+.+|..||+++..++|..+++ .+.+.+.+.++
T Consensus        68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecR-L~eLRnkeriS  146 (285)
T KOG0175|consen   68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECR-LHELRNKERIS  146 (285)
T ss_pred             ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHH-HHHHhcCccee
Confidence            34799999999999999999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         244 PKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       244 ~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      +.+.++.+++.+|.+|+  ..+.+...|+|||+.||
T Consensus       147 VsaASKllsN~~y~YkG--mGLsmGtMi~G~Dk~GP  180 (285)
T KOG0175|consen  147 VSAASKLLSNMVYQYKG--MGLSMGTMIAGWDKKGP  180 (285)
T ss_pred             hHHHHHHHHHHHhhccC--cchhheeeEeeccCCCC
Confidence            99999999999999984  47889999999999887

>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit

Probab=99.57  E-value=2.4e-14  Score=126.52  Aligned_cols=109  Identities=13%  Similarity=0.195  Sum_probs=93.5

Q ss_pred             eEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEec----ccEEEEeccChhhHHHHHHHHHhhcccccccccCC-CCC
Q psy9489         169 SVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN----KFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGF-VLK  243 (279)
Q Consensus       169 tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~----~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~-~l~  243 (279)
                      -+|||+++||||+++|++.+. +++...+.+||++++    +++++++||..+|++.+.+.++.+.+ .+++..+. +++
T Consensus         2 ~~vGIk~kdGVVLaadkr~~~-~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~-~~~~~~g~~~~~   79 (236)
T cd03765           2 YCLGIKLDAGLVFASDSRTNA-GVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLE-DPEETNLLNAPT   79 (236)
T ss_pred             eEEEEEeCCeEEEEEccCccC-CCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHH-hhHHhhCCCCCC
Confidence            468999999999999999765 455555799999998    88999999999999999999999998 78999999 799


Q ss_pred             HHHHHHHHHHHHhh---ccC-----CCCccceEEEEEEEe-CCCC
Q psy9489         244 PKSLHSWLTRVLYN---RRS-----QFDPLWINAFVAGMQ-NGEP  279 (279)
Q Consensus       244 ~~~la~~isr~lys---~r~-----~~~P~~vs~ii~G~D-~~~p  279 (279)
                      ++.+++.++..++.   +..     +.+||+|++|||||| +.||
T Consensus        80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp  124 (236)
T cd03765          80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEP  124 (236)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCC
Confidence            99999999987532   211     247999999999999 4566

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0184|consensus

Probab=99.57  E-value=9.4e-15  Score=124.22  Aligned_cols=133  Identities=14%  Similarity=0.166  Sum_probs=115.8

Q ss_pred             ecCcccccccchhhhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHH
Q psy9489         143 AGNDYADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL  222 (279)
Q Consensus       143 ~sG~~aD~~~l~~~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l  222 (279)
                      .+=+..|-|.+  .+++..+++..++|+|||++++||++++++.-++ ++..+...+||+.+++|+.++.+|..+|.+++
T Consensus        12 ~s~fSpdGrvf--QveYA~KAven~~T~IGIk~kdGVVl~vEKli~S-kLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l   88 (254)
T KOG0184|consen   12 ASTFSPDGRVF--QVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITS-KLYEPGSNERIFSVDRHIGMAVAGLIPDGRHL   88 (254)
T ss_pred             ceeeCCCCcee--hHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecc-cccccCCCCceEeecccccEEEeccccchHHH
Confidence            34456777766  5677788999999999999999999999998765 88888999999999999999999999999999


Q ss_pred             HHHHHhhcccccccccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489         223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       223 ~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ....+.+.. .++.+++.+++.+.+++.+...+  +++....|||+++.++++||++||
T Consensus        89 ~~~ar~ea~-~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~  146 (254)
T KOG0184|consen   89 VNRARDEAA-SWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGP  146 (254)
T ss_pred             HHHHHHHHH-HHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCc
Confidence            999999887 67777888999999999999977  355455779999999999998776

>KOG0178|consensus

Probab=99.56  E-value=3.4e-15  Score=126.00  Aligned_cols=146  Identities=18%  Similarity=0.192  Sum_probs=113.5

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc--------c
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------I  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------~  161 (279)
                      .+++++++.+|+|||..+||||||+++|.+.--+-.+-..+||++|+|++.|+++|+.+|+..|++.+|..        .
T Consensus        23 yAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~  102 (249)
T KOG0178|consen   23 YAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYG  102 (249)
T ss_pred             HHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999997644444456789999999999999999999999999888731        1


Q ss_pred             ccc-----------------------cceeeEE--EEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489         162 TPL-----------------------TTGTSVL--GLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND  215 (279)
Q Consensus       162 ~pi-----------------------~~g~tvl--gi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~  215 (279)
                      +++                       ++|.++|  |.+.+ +..++.+||+|.||+|              +..+.|..+
T Consensus       103 e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gW--------------ka~ciG~N~  168 (249)
T KOG0178|consen  103 EEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGW--------------KATCIGANS  168 (249)
T ss_pred             CCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCcccc--------------ceeeeccch
Confidence            111                       2566766  66544 7899999999999765              567777777


Q ss_pred             hhhHHHHHHHHHhhcccccc-cccCCCCCHHHHHHHHHH
Q psy9489         216 YADFQYLNDIVKQKILDDDL-HNDGFVLKPKSLHSWLTR  253 (279)
Q Consensus       216 ~aD~~~l~~~l~~~~~~~~~-~ee~~~l~~~~la~~isr  253 (279)
                          ..+.+.|+..|+++.. ++++..+.++.+...+..
T Consensus       169 ----~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~  203 (249)
T KOG0178|consen  169 ----GAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDS  203 (249)
T ss_pred             ----HHHHHHHHhhhccccccHHHHHHHHHHHHHhhccc
Confidence                7788999999987655 666666666665555443

>KOG0181|consensus

Probab=99.54  E-value=4.1e-15  Score=124.09  Aligned_cols=145  Identities=16%  Similarity=0.171  Sum_probs=116.3

Q ss_pred             CCCcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhc--------
Q psy9489          88 SGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ--------  159 (279)
Q Consensus        88 ~~~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~--------  159 (279)
                      ..+++.++.+|.+.|||+-.||||||++++ ..+.++....++|+++|.+||+|..||+.+|++.+++..++        
T Consensus        22 ieyAL~Av~~G~~SvGi~A~nGvVlatekk-~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~v  100 (233)
T KOG0181|consen   22 IEYALTAVVNGQTSVGIKAANGVVLATEKK-DVSPLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRV  100 (233)
T ss_pred             HHHHHHHHhCCCCceeeeecCceEEEeccC-CCCccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHH
Confidence            456788999999999999999999999998 44889999999999999999999999999999999988775        


Q ss_pred             ccccc-----------------------cceeeEE--EEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489         160 KITPL-----------------------TTGTSVL--GLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN  214 (279)
Q Consensus       160 ~~~pi-----------------------~~g~tvl--gi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG  214 (279)
                      ..+|+                       .+|.+++  |...+.+.++.+||.|+|              ...+..+.|-+
T Consensus       101 Y~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsy--------------f~wkatA~Gkn  166 (233)
T KOG0181|consen  101 YGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSY--------------FAWKATAMGKN  166 (233)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccce--------------eehhhhhhccC
Confidence            11221                       1455554  666678899999999998              55666777778


Q ss_pred             ChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHH
Q psy9489         215 DYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWL  251 (279)
Q Consensus       215 ~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~i  251 (279)
                      .    .....+++++|.++++++++....+-.|.+..
T Consensus       167 ~----v~aktFlEkR~~edleldd~ihtailtlkE~f  199 (233)
T KOG0181|consen  167 Y----VNAKTFLEKRYNEDLELDDAIHTAILTLKESF  199 (233)
T ss_pred             c----chHHHHHHHHhccccccchHHHHHHHHHHHHh
Confidence            8    77889999999988888876544444444443

>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type

Probab=99.52  E-value=6.5e-14  Score=123.37  Aligned_cols=118  Identities=15%  Similarity=0.158  Sum_probs=97.0

Q ss_pred             chhhhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccc
Q psy9489         153 LNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILD  232 (279)
Q Consensus       153 l~~~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~  232 (279)
                      +.+.-++..+++..|+++|||+++||||+++|++-        ++.+|||.++++++++.+|..+|++.+.+..+.+++ 
T Consensus        13 ~~~~~EYA~kav~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~-   83 (228)
T TIGR03691        13 MRDRAELARKGIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYAD-   83 (228)
T ss_pred             HhhHHHHHHHHHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHH-
Confidence            34555667788889999999999999999999962        457999999999999999999999999999888887 


Q ss_pred             ccccccC-CCCCHHHHHHHHHHHHhh-ccCCCCccceEEEEEEEeC--CCC
Q psy9489         233 DDLHNDG-FVLKPKSLHSWLTRVLYN-RRSQFDPLWINAFVAGMQN--GEP  279 (279)
Q Consensus       233 ~~~~ee~-~~l~~~~la~~isr~lys-~r~~~~P~~vs~ii~G~D~--~~p  279 (279)
                      .+.+..+ .+++++.+++.+++.+.. .+.+.|||+|++||||||+  +||
T Consensus        84 ~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp  134 (228)
T TIGR03691        84 MRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQD  134 (228)
T ss_pred             HHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCC
Confidence            5555554 689999999888876642 1233679999999999984  455

Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.

>KOG0183|consensus

Probab=99.52  E-value=2e-14  Score=121.60  Aligned_cols=144  Identities=11%  Similarity=0.173  Sum_probs=112.2

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhc-----c----
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ-----K----  160 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~-----~----  160 (279)
                      ++++++..|+|++|++++|+|||+.+++ |...+...+.+.||..+++|+++++||+.||++.+++..+-     +    
T Consensus        22 YAqEAvrkGstaVgvrg~~~vvlgvEkk-Sv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~e  100 (249)
T KOG0183|consen   22 YAQEAVRKGSTAVGVRGNNCVVLGVEKK-SVPKLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLE  100 (249)
T ss_pred             hHHHHHhcCceEEEeccCceEEEEEeec-chhhhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccC
Confidence            5678999999999999999999999999 77899999999999999999999999999999999988763     0    


Q ss_pred             ------------------------cccccceeeEEEEEeCC-cEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489         161 ------------------------ITPLTTGTSVLGLVFNG-GVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND  215 (279)
Q Consensus       161 ------------------------~~pi~~g~tvlgi~~~~-gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~  215 (279)
                                              .+|....+.+.|++.++ +.++.+||.|.+              -....-++|-++
T Consensus       101 dpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f--------------~ewka~aiGr~s  166 (249)
T KOG0183|consen  101 DPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIF--------------SEWKANAIGRSS  166 (249)
T ss_pred             CCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcch--------------hhhhcccccccc
Confidence                                    02322233444887654 789999999987              233455566666


Q ss_pred             hhhHHHHHHHHHhhcccc--cccccCCCCCHHHHHHHHH
Q psy9489         216 YADFQYLNDIVKQKILDD--DLHNDGFVLKPKSLHSWLT  252 (279)
Q Consensus       216 ~aD~~~l~~~l~~~~~~~--~~~ee~~~l~~~~la~~is  252 (279)
                          +.+.++|+++|.+.  .+..++.+|++++|.+.++
T Consensus       167 ----k~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvq  201 (249)
T KOG0183|consen  167 ----KTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQ  201 (249)
T ss_pred             ----HHHHHHHHHhcccccccccccHHHHHHHHHHHHhh
Confidence                89999999999854  2234556666666666655

>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

Probab=99.51  E-value=8.2e-14  Score=114.19  Aligned_cols=131  Identities=21%  Similarity=0.196  Sum_probs=105.1

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------------  161 (279)
                      +|+||++++||||+|+|++.+.+......+..||++++++++++.+|..+|++.+.+.++...                 
T Consensus         1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (164)
T cd01901           1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA   80 (164)
T ss_pred             CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            589999999999999999999888887889999999999999999999999999999888522                 


Q ss_pred             -------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecc-cEEEEeccChhhHHHHHHHHH
Q psy9489         162 -------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINK-FTILGAGNDYADFQYLNDIVK  227 (279)
Q Consensus       162 -------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~-~~~~~gSG~~aD~~~l~~~l~  227 (279)
                                   .|......+.|.+.+++-++..|+.|+.              ... .+.+.|+|+    ..+...++
T Consensus        81 ~~~~~~~~~~~~~~p~~~~~iiag~~~~~~~l~~id~~g~~--------------~~~~~~~~~G~~~----~~~~~~l~  142 (164)
T cd01901          81 KELAKLLQVYTQGRPFGVNLIVAGVDEGGGNLYYIDPSGPV--------------IENPGAVATGSRS----QRAKSLLE  142 (164)
T ss_pred             HHHHHHHHHhcCCCCcceEEEEEEEcCCCCEEEEECCCcCE--------------eecCcEEEECCCC----HHHHHHHH
Confidence                         1122222233554456899999999876              445 789999999    99999999


Q ss_pred             hhcccccccccCCCCCHHHH
Q psy9489         228 QKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       228 ~~~~~~~~~ee~~~l~~~~l  247 (279)
                      ..++++++.+++.++..+++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~l  162 (164)
T cd01901         143 KLYKPDMTLEEAVELALKAL  162 (164)
T ss_pred             HHhcCCCCHHHHHHHHHHHH
Confidence            99997777666655544443

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t

>KOG0180|consensus

Probab=99.47  E-value=1.9e-13  Score=112.20  Aligned_cols=111  Identities=24%  Similarity=0.320  Sum_probs=104.4

Q ss_pred             ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHH
Q psy9489         166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPK  245 (279)
Q Consensus       166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~  245 (279)
                      +|++++++..+++|.+|+|.+....+.....+.+|||.+.++.+++.+|...|.+.+.+.++.+.+ .|+++|..++-++
T Consensus         7 nGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~n-Ly~lre~R~i~P~   85 (204)
T KOG0180|consen    7 NGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKN-LYELREEREIKPE   85 (204)
T ss_pred             cCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHh-HHHhhhhcccCcH
Confidence            688999999999999999999888778888999999999999999999999999999999999998 8999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489         246 SLHSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       246 ~la~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      .+++.++..+|++|  |.||.+..++||+|+ ++|
T Consensus        86 ~~s~mvS~~lYekR--fgpYf~~PvVAGl~~~~kP  118 (204)
T KOG0180|consen   86 TFSSMVSSLLYEKR--FGPYFTEPVVAGLDDDNKP  118 (204)
T ss_pred             HHHHHHHHHHHHhh--cCCcccceeEeccCCCCCe
Confidence            99999999999999  889999999999986 344

>KOG0178|consensus

Probab=99.45  E-value=1.7e-13  Score=115.72  Aligned_cols=119  Identities=15%  Similarity=0.226  Sum_probs=104.7

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceee-ecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMR-FNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~-~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      +++.++.++...++|||..+|||+++.+.+.+. .++. ....+|||+++++++|+.+|..+|+..+.+.++-..+ .+.
T Consensus        21 VEyAmeais~aGt~iGila~DGvvLa~e~k~t~-kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ-~yl   98 (249)
T KOG0178|consen   21 VEYAMEAISHAGTCIGILASDGVVLAGENKVTS-KLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQ-RYL   98 (249)
T ss_pred             HHHHHHHHhhhcceeEEEecCceEEEeecccch-hhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHH-HHH
Confidence            445678888999999999999999999887654 4443 3567999999999999999999999999999998888 788


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNG  277 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~  277 (279)
                      ...+++++++.|...+...-  |++.++.|||+||.+.+|||++
T Consensus        99 ~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~  142 (249)
T KOG0178|consen   99 FRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDR  142 (249)
T ss_pred             HHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecC
Confidence            88999999999999998855  8888889999999999999974

>KOG0183|consensus

Probab=99.41  E-value=4.7e-13  Score=113.39  Aligned_cols=128  Identities=11%  Similarity=0.161  Sum_probs=111.0

Q ss_pred             ccccccchhhhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHH
Q psy9489         147 YADFQYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV  226 (279)
Q Consensus       147 ~aD~~~l~~~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l  226 (279)
                      ..|-+-|  .+++.++++..|++.+|++.++.++++++++ |...+...+...||..+++|++++.+|..+|+..+++..
T Consensus        12 SPDGhL~--QVEYAqEAvrkGstaVgvrg~~~vvlgvEkk-Sv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrA   88 (249)
T KOG0183|consen   12 SPDGHLF--QVEYAQEAVRKGSTAVGVRGNNCVVLGVEKK-SVPKLQDERTVRKISMLDDHVVMAFAGLTADARILINRA   88 (249)
T ss_pred             CCCCCEE--eeHhHHHHHhcCceEEEeccCceEEEEEeec-chhhhhhhhhhhhheeecceeeEEecCCCccceeehhhH
Confidence            4455444  3466678888999999999999999999988 456888888999999999999999999999999999999


Q ss_pred             HhhcccccccccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCC
Q psy9489         227 KQKILDDDLHNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGE  278 (279)
Q Consensus       227 ~~~~~~~~~~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~  278 (279)
                      +-+++ .|++.-..+++++.|..+++..-  |++-.+-|||++|++|+|+|+.+
T Consensus        89 rvecq-Shrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g  141 (249)
T KOG0183|consen   89 RVECQ-SHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDG  141 (249)
T ss_pred             hHhhh-hhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCC
Confidence            99998 78888888999999999999866  76655668999999999999753

>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

Probab=99.40  E-value=4.7e-12  Score=103.70  Aligned_cols=110  Identities=22%  Similarity=0.154  Sum_probs=99.9

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      ++++|+.++++++++.|++.+.+.........|++.++++++++.+|..+|.+.+...++.+.+ .+++.++.++++..+
T Consensus         1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   79 (164)
T cd01901           1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQ-LYRLRYGEPISVVAL   79 (164)
T ss_pred             CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHH
Confidence            4788999999999999999988777767889999999999999999999999999999999998 778888999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++.+++.++..|. .+|++++++|||+|+++|
T Consensus        80 ~~~~~~~~~~~~~-~~p~~~~~iiag~~~~~~  110 (164)
T cd01901          80 AKELAKLLQVYTQ-GRPFGVNLIVAGVDEGGG  110 (164)
T ss_pred             HHHHHHHHHHhcC-CCCcceEEEEEEEcCCCC
Confidence            9999999987764 689999999999996443

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t

>KOG0181|consensus

Probab=99.37  E-value=6e-13  Score=111.22  Aligned_cols=120  Identities=16%  Similarity=0.258  Sum_probs=105.9

Q ss_pred             hcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccc
Q psy9489         158 KQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHN  237 (279)
Q Consensus       158 ~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~e  237 (279)
                      ++.+.++..|.+.+|++-.+|+++++++.-. ..+.....++|++.+.+++.++.||..+|.+.+....++..+ .|..-
T Consensus        23 eyAL~Av~~G~~SvGi~A~nGvVlatekk~~-s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe-~Yy~v  100 (233)
T KOG0181|consen   23 EYALTAVVNGQTSVGIKAANGVVLATEKKDV-SPLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAE-QYYRV  100 (233)
T ss_pred             HHHHHHHhCCCCceeeeecCceEEEeccCCC-CccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHH-HHHHH
Confidence            4456677789999999999999999998643 367888899999999999999999999999999999988887 47777


Q ss_pred             cCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489         238 DGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       238 e~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      +++.+++..+...++..+  |++.++.|||+|+++|+|||+++|
T Consensus       101 Y~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p  144 (233)
T KOG0181|consen  101 YGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGP  144 (233)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCce
Confidence            889999999999999988  788888999999999999998776

>PRK05456 ATP-dependent protease subunit HslV; Provisional

Probab=99.34  E-value=1.2e-11  Score=104.32  Aligned_cols=100  Identities=20%  Similarity=0.186  Sum_probs=82.3

Q ss_pred             eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEe-cccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHH
Q psy9489         167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPK  245 (279)
Q Consensus       167 g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i-~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~  245 (279)
                      ++|++|++++|||++++|++.++|.++.+++.+||+++ +++++++.+|+.+|+|.+.++++.+.+ .|+.    ++ ++
T Consensus         1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~-~y~~----~~-~~   74 (172)
T PRK05456          1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLE-EHQG----NL-LR   74 (172)
T ss_pred             CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHH-HccC----cc-HH
Confidence            47899999999999999999999999999999999999 999999999999999999999999988 5552    22 57


Q ss_pred             HHHHHHHHHHhhccCCCCccceEEEEEEE
Q psy9489         246 SLHSWLTRVLYNRRSQFDPLWINAFVAGM  274 (279)
Q Consensus       246 ~la~~isr~lys~r~~~~P~~vs~ii~G~  274 (279)
                      +.++..+... +.+ ..+|+.+++|++++
T Consensus        75 ~~a~l~~~l~-~~~-~~~~l~~~~lv~d~  101 (172)
T PRK05456         75 AAVELAKDWR-TDR-YLRRLEAMLIVADK  101 (172)
T ss_pred             HHHHHHHHHH-hcc-CCCccEEEEEEEcC
Confidence            7776664432 222 12578899999643

>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome

Probab=99.34  E-value=9e-12  Score=104.68  Aligned_cols=99  Identities=18%  Similarity=0.139  Sum_probs=81.4

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecc-cEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINK-FTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKS  246 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~-~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~  246 (279)
                      +|++|++++|||++++|++.++|.++..++.+||+++++ +++++.+|+.+|++.+.++++.+.+ .|+.+..     +.
T Consensus         1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~-~y~~~~~-----~~   74 (171)
T cd01913           1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLE-QYPGNLL-----RA   74 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHH-HhhchHH-----HH
Confidence            578999999999999999999999999999999999998 9999999999999999999999998 6666543     45


Q ss_pred             HHHHHHHHHhhccCCCCccc-eEEEEEEEe
Q psy9489         247 LHSWLTRVLYNRRSQFDPLW-INAFVAGMQ  275 (279)
Q Consensus       247 la~~isr~lys~r~~~~P~~-vs~ii~G~D  275 (279)
                      +++.+...+ +.|  .+|+. +.++++++|
T Consensus        75 aa~l~~~l~-~~~--~~~~l~a~~iv~~~~  101 (171)
T cd01913          75 AVELAKDWR-TDR--YLRRLEAMLIVADKE  101 (171)
T ss_pred             HHHHHHHHH-hcc--CcCceEEEEEEeCCC
Confidence            566654443 223  34665 777777654

HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.

>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit

Probab=99.32  E-value=1.7e-11  Score=103.02  Aligned_cols=99  Identities=19%  Similarity=0.186  Sum_probs=80.9

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEe-cccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKS  246 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i-~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~  246 (279)
                      +|++|++++|||++++|++.++|.++..++.+||+++ +++++++.+|+.+|++.+.++++.+.+ .|+.+    + .+.
T Consensus         1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~-~y~~~----~-~~~   74 (171)
T TIGR03692         1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLE-EYQGN----L-TRA   74 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHH-HccCc----h-HHH
Confidence            5789999999999999999999999999999999999 599999999999999999999999998 56653    2 467


Q ss_pred             HHHHHHHHHhhccCCCCcc-ceEEEEEEEe
Q psy9489         247 LHSWLTRVLYNRRSQFDPL-WINAFVAGMQ  275 (279)
Q Consensus       247 la~~isr~lys~r~~~~P~-~vs~ii~G~D  275 (279)
                      +++.+++. ..++  ..|+ .+.++++|+|
T Consensus        75 ~a~l~~~~-~~~~--~~~~l~a~~iv~~~~  101 (171)
T TIGR03692        75 AVELAKDW-RTDR--YLRRLEAMLIVADKE  101 (171)
T ss_pred             HHHHHHHH-hhcc--cccccEEEEEEEcCC
Confidence            77777662 2222  2344 4777777664

The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.

>KOG0173|consensus

Probab=99.26  E-value=1.3e-11  Score=107.05  Aligned_cols=112  Identities=21%  Similarity=0.324  Sum_probs=101.1

Q ss_pred             ccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCC
Q psy9489         164 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLK  243 (279)
Q Consensus       164 i~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~  243 (279)
                      .++|++++|+.++|+||+++|++.+-|+.+..++++||+.+.++++++|.|..+|...+...+-.+.+ .+++...++..
T Consensus        34 tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~-Lh~l~t~R~~r  112 (271)
T KOG0173|consen   34 TKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLE-LHRLNTGRKPR  112 (271)
T ss_pred             cccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHH-HHHhccCCCCc
Confidence            45789999999999999999999999999999999999999999999999999999999998888887 78888888888


Q ss_pred             HHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         244 PKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       244 ~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      +-+....+++.|+.+.+   -.+..+||||+|.-||
T Consensus       113 Vv~A~~mlkQ~LFrYqG---~IgA~LiiGGvD~TGp  145 (271)
T KOG0173|consen  113 VVTALRMLKQHLFRYQG---HIGAALILGGVDPTGP  145 (271)
T ss_pred             eeeHHHHHHHHHHHhcC---cccceeEEccccCCCC
Confidence            88888899988876653   4889999999998776

>KOG0182|consensus

Probab=99.21  E-value=2.9e-11  Score=102.39  Aligned_cols=146  Identities=14%  Similarity=0.128  Sum_probs=114.5

Q ss_pred             CCcCcCccC-CccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhc--------
Q psy9489          89 GSFSTPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ--------  159 (279)
Q Consensus        89 ~~~~~~~~~-G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~--------  159 (279)
                      ..+++++++ |=|+||+++||++|+++.++.. .+++.+.++.-+|+|+.+|+|+++|..+|.+..++..+.        
T Consensus        26 EYafkAin~~gltsVavrgkDcavvvsqKkvp-DKLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk  104 (246)
T KOG0182|consen   26 EYAFKAINQAGLTSVAVRGKDCAVVVTQKKVP-DKLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYK  104 (246)
T ss_pred             ehHHHHhhcCCCceEEEcCCceEEEEecccCc-ccccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhh
Confidence            356788885 8999999999999999999954 899999999999999999999999999999999988874        


Q ss_pred             -------------------------ccccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEec
Q psy9489         160 -------------------------KITPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAG  213 (279)
Q Consensus       160 -------------------------~~~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gS  213 (279)
                                               .++|.....+++|++.+ ++.++-+|+.|-|              ..-+..++|-
T Consensus       105 ~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy--------------~g~kAtaaG~  170 (246)
T KOG0182|consen  105 YGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYY--------------YGFKATAAGV  170 (246)
T ss_pred             cCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcccc--------------ccceeeeccc
Confidence                                     12344455677888764 6889999999865              3444555555


Q ss_pred             cChhhHHHHHHHHHhhcccc--cccccCCCCCHHHHHHHHHH
Q psy9489         214 NDYADFQYLNDIVKQKILDD--DLHNDGFVLKPKSLHSWLTR  253 (279)
Q Consensus       214 G~~aD~~~l~~~l~~~~~~~--~~~ee~~~l~~~~la~~isr  253 (279)
                      -.    +.+..+|++.++.+  .+.++..++.+.+|...+.-
T Consensus       171 Kq----~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~  208 (246)
T KOG0182|consen  171 KQ----QEATSFLEKKYKKDIDLTFEETVETAISALQSSLGI  208 (246)
T ss_pred             ch----hhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhc
Confidence            56    88999999999876  33555555555555555543

>KOG0182|consensus

Probab=99.14  E-value=2.4e-10  Score=96.94  Aligned_cols=121  Identities=12%  Similarity=0.134  Sum_probs=107.2

Q ss_pred             hhcccccccc-eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         157 VKQKITPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       157 l~~~~~pi~~-g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      +++..+++.. |-+.++++.+|..++.+.+..+ ++++.+..+..+|++..++.++.+|..+|+.+.....+.+.. .++
T Consensus        25 VEYafkAin~~gltsVavrgkDcavvvsqKkvp-DKLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa-~~~  102 (246)
T KOG0182|consen   25 VEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVP-DKLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAA-EFR  102 (246)
T ss_pred             eehHHHHhhcCCCceEEEcCCceEEEEecccCc-ccccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHH-hhh
Confidence            3445567765 6678899999999999888864 588999999999999999999999999999999999999988 788


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCC-CC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNG-EP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~-~p  279 (279)
                      +.++.+++++.|+..+....  |+++..+||++|.+++.|+|++ ||
T Consensus       103 yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP  149 (246)
T KOG0182|consen  103 YKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGP  149 (246)
T ss_pred             hhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCc
Confidence            99999999999999999855  8999999999999999999975 56

>KOG0863|consensus

Probab=99.09  E-value=2.9e-10  Score=97.49  Aligned_cols=120  Identities=19%  Similarity=0.176  Sum_probs=96.0

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++.++++..|+..+|++.+.-.++.+-++...   -.....+|||++++|+.+..+|..+|...+.++|+.++. .++
T Consensus        21 QvEya~EavkqGsatVGLks~thaVLvAl~r~~s---eLss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~-~~~   96 (264)
T KOG0863|consen   21 QVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQS---ELSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECL-NSR   96 (264)
T ss_pred             HHHHHHHHHhcccceEeecccceEEEeeeccchh---HHHHhhheeEecccccceEEeccCcchHHHHHHHHHHHh-hhh
Confidence            4556778888999999999887555544333221   112346899999999999999999999999999999998 778


Q ss_pred             cccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeCCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      .....++++.-+.+-+.+.+.  ++|-+-|||+|.++++|||+.||
T Consensus        97 ~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~  142 (264)
T KOG0863|consen   97 FIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGP  142 (264)
T ss_pred             hccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCc
Confidence            888899999999998888773  34434469999999999998876

>KOG0863|consensus

Probab=99.04  E-value=4.5e-10  Score=96.39  Aligned_cols=160  Identities=13%  Similarity=0.108  Sum_probs=109.0

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc--------c
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------I  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------~  161 (279)
                      .++++++.|+++||+|.++..||+|=+|.. +-+  +...+||++|++|++++.||+.+|.+.+.+.+++.        .
T Consensus        24 ya~EavkqGsatVGLks~thaVLvAl~r~~-seL--ss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~  100 (264)
T KOG0863|consen   24 YAMEAVKQGSATVGLKSRTHAVLVALKRAQ-SEL--SSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYG  100 (264)
T ss_pred             HHHHHHhcccceEeecccceEEEeeeccch-hHH--HHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccC
Confidence            457799999999999999999999999954 322  34568999999999999999999999999999961        0


Q ss_pred             -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                               +|+..|--+.|.+..++.|+-..|.|.+              .+-+-...|+=+ 
T Consensus       101 r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v--------------~e~~g~sIGsRS-  165 (264)
T KOG0863|consen  101 RPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNV--------------FECKGMSIGSRS-  165 (264)
T ss_pred             CcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccE--------------EEEeeeecccch-
Confidence                                     1333333344565567778877887765              444556667777 


Q ss_pred             hhHHHHHHHHHhhcccccccccCCCCCHHHHHH-HHHHHHhhccC--CCCccceEEEEEEEeC
Q psy9489         217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHS-WLTRVLYNRRS--QFDPLWINAFVAGMQN  276 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~-~isr~lys~r~--~~~P~~vs~ii~G~D~  276 (279)
                         |.+..+|+.++.+ +.     +.+++.|.. .+.-+--+...  .+....|++-|.|.|.
T Consensus       166 ---QsARTyLEr~~e~-f~-----~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~  219 (264)
T KOG0863|consen  166 ---QSARTYLERNLEE-FE-----DSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDE  219 (264)
T ss_pred             ---hhHHHHHHHHHHH-Hh-----cCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCC
Confidence               7788888877662 22     334443332 22212122221  2345668888888764

>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1e-06  Score=72.24  Aligned_cols=126  Identities=15%  Similarity=0.177  Sum_probs=89.7

Q ss_pred             CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecC-ceEeeecCcccccccchhhhhccccccccee---eE--
Q psy9489          97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINK-FTILGAGNDYADFQYLNDIVKQKITPLTTGT---SV--  170 (279)
Q Consensus        97 ~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~-~~~~~~sG~~aD~~~l~~~l~~~~~pi~~g~---tv--  170 (279)
                      ++||+++++-++=|+||+|...|.|..+...+..|+-+|.+ +++.|.+|..||+..|.+.++.+.+..+ +.   ..  
T Consensus         3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~-g~L~raave   81 (178)
T COG5405           3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ-GDLFRAAVE   81 (178)
T ss_pred             eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc-CcHHHHHHH
Confidence            68999999999999999999999999999999998888875 8999999999999999988886443222 10   00  


Q ss_pred             EEEE--e------CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcc
Q psy9489         171 LGLV--F------NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKIL  231 (279)
Q Consensus       171 lgi~--~------~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~  231 (279)
                      ++=+  .      -...++.+|+...+   +.+.+- -++.-++.+.+.|||.    .++..-.+..++
T Consensus        82 laKdwr~Dk~lr~LEAmllVad~~~il---~isG~g-dV~epe~~~~aIGSGg----nyAl~AarAl~~  142 (178)
T COG5405          82 LAKDWRTDKYLRKLEAMLLVADKTHIL---IITGNG-DVIEPEDDIIAIGSGG----NYALSAARALME  142 (178)
T ss_pred             HHHhhhhhhHHHHHhhheeEeCCCcEE---EEecCc-ceecCCCCeEEEcCCc----hHHHHHHHHHHh
Confidence            0000  0      02344455665432   222222 2233355689999999    888888887775

>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.32  E-value=0.0057  Score=50.48  Aligned_cols=66  Identities=20%  Similarity=0.244  Sum_probs=57.6

Q ss_pred             ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEe-cccEEEEeccChhhHHHHHHHHHhhcc
Q psy9489         166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKIL  231 (279)
Q Consensus       166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i-~~~~~~~gSG~~aD~~~l~~~l~~~~~  231 (279)
                      .++|+++++-++-++++.|...+.|..+...+..|+.++ ..++.++..|+.+|+..+.+.++..++
T Consensus         3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle   69 (178)
T COG5405           3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLE   69 (178)
T ss_pred             eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHH
Confidence            468899999999999999999999999888877666554 458999999999999999999998887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	279
1iru_N	219	Crystal Structure Of The Mammalian 20s Proteasome A		3e-33
3unb_M	219	Mouse Constitutive 20s Proteasome In Complex With P		3e-33
1ryp_N	233	Crystal Structure Of The 20s Proteasome From Yeast		6e-20
1g0u_M	266	A Gated Channel Into The Proteasome Core Particle L		6e-20
3nzj_H	261	Crystal Structure Of Yeast 20s Proteasome In Comple		3e-04
3nzj_H	261	Crystal Structure Of Yeast 20s Proteasome In Comple		6e-04

>pdb|1IRU|N Chain N, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 219

Iteration: 1
 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 83/116 (71%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
           P+ TGTSVLG+ F GGV++AAD  G YGS+ RF +  RIM++N  T+LGA  DYADFQYL
Sbjct: 4   PMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYL 63
Query: 223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
             ++ Q ++D++L  DG    P+++HSWLTR +Y+RRS+ +PLW    + G  +GE
Sbjct: 64  KQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGE 119

>pdb|3UNB|M Chain M, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 219

Iteration: 1
 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 84/116 (72%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
           P+ TGTSVLG+ F+GGV++AAD  G YGS+ RF +  RIM++N  T+LGA  DYADFQYL
Sbjct: 4   PMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 63
Query: 223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE 278
             ++ Q ++D++L  DG    P+++HSWLTR +Y+RRS+ +PLW    + G  +GE
Sbjct: 64  KQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGE 119

>pdb|1RYP|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 233

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY- 221
           P+ TGTSV+ + ++ GVI+AAD+ G YGS++RFN   R++ +   T++G   D +D Q+ 
Sbjct: 4   PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 63
Query: 222 ---LNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQ-NG 277
              L D+V +   D+ L +    L+P  +  +L  V+Y RRS+ +PLW    VAG+Q NG
Sbjct: 64  ERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNG 123
Query: 278 E 278
           +
Sbjct: 124 D 124

>pdb|1G0U|M Chain M, A Gated Channel Into The Proteasome Core Particle Length = 266

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY- 221
           P+ TGTSV+ + ++ GVI+AAD+ G YGS++RFN   R++ +   T++G   D +D Q+ 
Sbjct: 37  PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 96
Query: 222 ---LNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQ-NG 277
              L D+V +   D+ L +    L+P  +  +L  V+Y RRS+ +PLW    VAG+Q NG
Sbjct: 97  ERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNG 156
Query: 278 E 278
           +
Sbjct: 157 D 157

>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 261

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 77  FPNVLPHYFRRSGSFSTP--LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQ 134
           F N   + F    S + P   +TGT+++G+ FN GV++AAD+    G ++   +C ++ +
Sbjct: 6   FDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHR 65
Query: 135 IN-KFTILGAGNDYADFQYLNDIVKQKI 161
           I+ K    GAG   AD + +  ++   I
Sbjct: 66  ISPKIWCAGAGT-AADTEAVTQLIGSNI 92

>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 261

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Query: 143 AGNDYADFQYLNDIVKQKIT---PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCP 199
           AG  + ++Q  N + +   T     +TGT+++G+ FN GV++AAD+    G ++   +C 
Sbjct: 2   AGLSFDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCA 61
Query: 200 RIMQIN-KFTILGAGNDYADFQYLNDIVKQKILDDDLHN 237
           ++ +I+ K    GAG   AD + +  ++   I   +LH+
Sbjct: 62  KLHRISPKIWCAGAGT-AADTEAVTQLIGSNI---ELHS 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
1iru_N	219	20S proteasome; cell cycle, immune response, prote	6e-40
1iru_N	219	20S proteasome; cell cycle, immune response, prote	3e-21
1iru_N	219	20S proteasome; cell cycle, immune response, prote	8e-18
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	1e-36
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	8e-21
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	5e-15
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	1e-35
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	8e-21
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	9e-15
1iru_K	201	20S proteasome; cell cycle, immune response, prote	2e-25
1iru_K	201	20S proteasome; cell cycle, immune response, prote	6e-14
1iru_K	201	20S proteasome; cell cycle, immune response, prote	7e-12
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	7e-25
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	1e-13
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	5e-12
1iru_M	213	20S proteasome; cell cycle, immune response, prote	2e-18
1iru_M	213	20S proteasome; cell cycle, immune response, prote	4e-12
1iru_M	213	20S proteasome; cell cycle, immune response, prote	6e-07
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	2e-13
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	3e-09
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	3e-13
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	2e-09
1iru_I	234	20S proteasome; cell cycle, immune response, prote	1e-12
1iru_I	234	20S proteasome; cell cycle, immune response, prote	1e-08
1iru_I	234	20S proteasome; cell cycle, immune response, prote	8e-06
1iru_J	205	20S proteasome; cell cycle, immune response, prote	2e-11
1iru_J	205	20S proteasome; cell cycle, immune response, prote	6e-08
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	3e-10
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	8e-10
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	2e-09
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	5e-08
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	3e-09
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	1e-08
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	5e-09
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	1e-08
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	8e-09
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	8e-07
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	9e-09
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	5e-08
1iru_H	205	20S proteasome; cell cycle, immune response, prote	2e-08
1iru_H	205	20S proteasome; cell cycle, immune response, prote	1e-06
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	4e-08
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	3e-06
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	6e-08
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	4e-07
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	1e-07
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	2e-06
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	1e-07
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	2e-06
1iru_L	204	20S proteasome; cell cycle, immune response, prote	2e-07
1iru_L	204	20S proteasome; cell cycle, immune response, prote	3e-06
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	4e-07
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	4e-06
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	2e-06
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	2e-05
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	3e-06

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219

 Score =  137 bits (347), Expect = 6e-40
 Identities = 59/118 (50%), Positives = 83/118 (70%)

Query: 162 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY 221
            P+ TGTSVLG+ F GGV++AAD  G YGS+ RF +  RIM++N  T+LGA  DYADFQY
Sbjct: 3   NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQY 62

Query: 222 LNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
           L  ++ Q ++D++L  DG    P+++HSWLTR +Y+RRS+ +PLW    + G  +GE 
Sbjct: 63  LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES 120

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219

 Score = 88.4 bits (220), Expect = 3e-21
 Identities = 38/69 (55%), Positives = 50/69 (72%)

Query: 93  TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY 152
            P+ TGTSVLG+ F GGV++AAD  G YGS+ RF +  RIM++N  T+LGA  DYADFQY
Sbjct: 3   NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQY 62

Query: 153 LNDIVKQKI 161
           L  ++ Q +
Sbjct: 63  LKQVLGQMV 71

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219

 Score = 79.2 bits (196), Expect = 8e-18
 Identities = 34/64 (53%), Positives = 44/64 (68%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
           FLG VD LG AYE   L+ G+G ++A PLLR+  EK P +S+ EA  L++ CM +LY RD
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRD 180

Query: 61  ARSG 64
           ARS 
Sbjct: 181 ARSY 184

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233

 Score =  129 bits (326), Expect = 1e-36
 Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 5/123 (4%)

Query: 162 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY 221
            P+ TGTSV+ + ++ GVI+AAD+ G YGS++RFN   R++ +   T++G   D +D Q+
Sbjct: 3   QPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQH 62

Query: 222 LNDIVKQKI----LDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM-QN 276
           +  ++K  +     D+ L +    L+P  +  +L  V+Y RRS+ +PLW    VAG+  N
Sbjct: 63  IERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN 122

Query: 277 GEP 279
           G+ 
Sbjct: 123 GDQ 125

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233

 Score = 87.4 bits (217), Expect = 8e-21
 Identities = 27/70 (38%), Positives = 47/70 (67%)

Query: 93  TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY 152
            P+ TGTSV+ + ++ GVI+AAD+ G YGS++RFN   R++ +   T++G   D +D Q+
Sbjct: 3   QPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQH 62

Query: 153 LNDIVKQKIT 162
           +  ++K  +T
Sbjct: 63  IERLLKDLVT 72

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233

 Score = 71.6 bits (176), Expect = 5e-15
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQ---ETEKNPQMSKEEAIALIKTCMDLLY 57
           FL  V+ LG  Y    L+ GFG H+A PLLR+        P+ + + A   I   M +LY
Sbjct: 126 FLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLY 185

Query: 58  VRDARSG 64
            RDARS 
Sbjct: 186 YRDARSS 192

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266

 Score =  127 bits (321), Expect = 1e-35
 Identities = 44/122 (36%), Positives = 74/122 (60%), Gaps = 5/122 (4%)

Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
           P+ TGTSV+ + ++ GVI+AAD+ G YGS++RFN   R++ +   T++G   D +D Q++
Sbjct: 37  PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 96

Query: 223 NDIVKQKI----LDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM-QNG 277
             ++K  +     D+ L +    L+P  +  +L  V+Y RRS+ +PLW    VAG+  NG
Sbjct: 97  ERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNG 156

Query: 278 EP 279
           + 
Sbjct: 157 DQ 158

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266

 Score = 88.2 bits (219), Expect = 8e-21
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 1/103 (0%)

Query: 60  DARSGAKNGPSLGKYHDFPNVLPHYFRRSGSFST-PLTTGTSVLGLVFNGGVILAADSAG 118
           +    +   P+   Y  +   + +        +  P+ TGTSV+ + ++ GVI+AAD+ G
Sbjct: 2   NHDPFSWGRPADSTYGAYNTQIANAGASPMVNTQQPIVTGTSVISMKYDNGVIIAADNLG 61

Query: 119 YYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI 161
            YGS++RFN   R++ +   T++G   D +D Q++  ++K  +
Sbjct: 62  SYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLV 104

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266

 Score = 71.3 bits (175), Expect = 9e-15
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKN---PQMSKEEAIALIKTCMDLLY 57
           FL  V+ LG  Y    L+ GFG H+A PLLR+  ++    P+ + + A   I   M +LY
Sbjct: 159 FLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLY 218

Query: 58  VRDARSG 64
            RDARS 
Sbjct: 219 YRDARSS 225

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201

 Score = 98.8 bits (247), Expect = 2e-25
 Identities = 17/108 (15%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
             ++G+     V++A+D       +   +D  ++ ++++  +L    +  D     + ++
Sbjct: 2   EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61

Query: 228 QKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
           + +    L+   +G+ L P +  ++  R L +      P  +N  +AG
Sbjct: 62  KNV---QLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAG 106

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201

 Score = 68.0 bits (167), Expect = 6e-14
 Identities = 7/63 (11%), Positives = 28/63 (44%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
             ++G+     V++A+D       +   +D  ++ ++++  +L    +  D     + ++
Sbjct: 2   EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61

Query: 159 QKI 161
           + +
Sbjct: 62  KNV 64

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201

 Score = 62.2 bits (152), Expect = 7e-12
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
            L  +D L    +    + G+G  + + +L  +    P +S+E A+ L++ C++ L  R 
Sbjct: 114 ALYYMDYLAALAKAPFAAHGYGAFLTLSIL--DRYYTPTISRERAVELLRKCLEELQKRF 171

Query: 61  ARSG 64
             + 
Sbjct: 172 ILNL 175

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198

 Score = 97.3 bits (243), Expect = 7e-25
 Identities = 21/116 (18%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
             +LG+     VILA+  A   G  +  +   +  Q++  T++    +  D     + ++
Sbjct: 2   DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61

Query: 228 QKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM--QNGEP 279
             I    L+   + + L P+++ S++ + L        P  +N  + G   +  +P
Sbjct: 62  ANI---QLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKP 114

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198

 Score = 66.8 bits (164), Expect = 1e-13
 Identities = 12/63 (19%), Positives = 26/63 (41%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
             +LG+     VILA+  A   G  +  +   +  Q++  T++    +  D     + ++
Sbjct: 2   DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61

Query: 159 QKI 161
             I
Sbjct: 62  ANI 64

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198

 Score = 62.2 bits (152), Expect = 5e-12
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
            L  +D LGT  E    + G+       LL  +    P M+ EE + L+K C+  L  R 
Sbjct: 115 ELYQIDYLGTKVELPYGAHGYSGFYTFSLL--DHHYRPDMTTEEGLDLLKLCVQELEKRM 172

Query: 61  ARSG 64
               
Sbjct: 173 PMDF 176

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213

 Score = 80.4 bits (199), Expect = 2e-18
 Identities = 22/117 (18%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            G ++L +      I+A+D+    G  +   D P+  ++   T++G    + D   L  I
Sbjct: 8   NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 67

Query: 226 VKQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM-QNGEP 279
           ++ ++    ++  ++   +   ++ + L+ +LY+RR  F P ++   + G+ + G+ 
Sbjct: 68  IEARL---KMYKHSNNKAMTTGAIAAMLSTILYSRR--FFPYYVYNIIGGLDEEGKG 119

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213

 Score = 63.0 bits (154), Expect = 4e-12
 Identities = 15/71 (21%), Positives = 33/71 (46%)

Query: 91  FSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADF 150
           FS  +  G ++L +      I+A+D+    G  +   D P+  ++   T++G    + D 
Sbjct: 2   FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 61

Query: 151 QYLNDIVKQKI 161
             L  I++ ++
Sbjct: 62  LTLTKIIEARL 72

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLL-------RQETEKNPQMSKEEAIALIKTCM 53
            + + D +G+   D   + G  + +  PLL         +  ++  +S + A+ L+K   
Sbjct: 120 AVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVF 179

Query: 54  DLLYVRDARSG 64
                RD  +G
Sbjct: 180 ISAAERDVYTG 190

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 2/108 (1%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            G ++LG+      +LA D+       +     P++       ++ A    AD   L   
Sbjct: 8   NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKR 67

Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
            K  +      ++   L   S    +  +LY +R  F P +++  +AG
Sbjct: 68  FKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKR--FFPYYVHTIIAG 113

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 13/71 (18%), Positives = 25/71 (35%)

Query: 91  FSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADF 150
           F+     G ++LG+      +LA D+       +     P++       ++ A    AD 
Sbjct: 2   FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADG 61

Query: 151 QYLNDIVKQKI 161
             L    K  +
Sbjct: 62  DALVKRFKNSV 72

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 10/118 (8%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            G  V+ +     V +A D      S+   N   +I       +   G    D   LN++
Sbjct: 7   NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGL-ATDVTTLNEM 65

Query: 226 VKQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM--QNGEP 279
            + K    +L+   +   ++P++    ++  LY RR  F P ++   VAG+  ++G+P
Sbjct: 66  FRYKT---NLYKLKEERAIEPETFTQLVSSSLYERR--FGPYFVGPVVAGINSKSGKP 118

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 92  STPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADF 150
           S P +  G  V+ +     V +A D      S+   N   +I       +   G    D 
Sbjct: 1   SDPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGL-ATDV 59

Query: 151 QYLNDIVKQKI 161
             LN++ + K 
Sbjct: 60  TTLNEMFRYKT 70

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 226
           T++ G+V+  G++L AD+    G ++   +C +I  I+      GAG   AD      ++
Sbjct: 1   TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAG-TAADTDMTTQLI 59

Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
              +   +LH  + G + +  + +  L ++L+  R     +     + G+    P
Sbjct: 60  SSNL---ELHSLSTGRLPRVVTANRMLKQMLFRYR---GYIGAALVLGGVDVTGP 108

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 157
           T++ G+V+  G++L AD+    G ++   +C +I  I+      GAG   AD      ++
Sbjct: 1   TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAG-TAADTDMTTQLI 59

Query: 158 K 158
            
Sbjct: 60  S 60

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 2   LGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDA 61
           L ++   G+  +   ++ G G+  A+ +   E +  P M +EEA  L+   +      D 
Sbjct: 110 LYSIYPHGSTDKLPYVTMGSGSLAAMAVF--EDKFRPDMEEEEAKNLVSEAIAAGIFNDL 167

Query: 62  RSG 64
            SG
Sbjct: 168 GSG 170

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLND 224
            G +V+ +     V +AAD      + +   D  +I  +     +G AG    D Q +  
Sbjct: 7   NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGL-ATDVQTVAQ 65

Query: 225 IVKQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
            +K ++   +L+   +G  +KP +L S +  +LY +R  F P +    +AG
Sbjct: 66  RLKFRL---NLYELKEGRQIKPYTLMSMVANLLYEKR--FGPYYTEPVIAG 111

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205

 Score = 51.0 bits (123), Expect = 6e-08
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLND 155
            G +V+ +     V +AAD      + +   D  +I  +     +G AG    D Q +  
Sbjct: 7   NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGL-ATDVQTVAQ 65

Query: 156 IVKQKI 161
            +K ++
Sbjct: 66  RLKFRL 71

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 76  DFPNVLPHYFRRSGSFSTP--LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIM 133
            F N   + F    S + P   +TGT+++G+ FN GV++AAD+    G ++   +C ++ 
Sbjct: 5   SFDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLH 64

Query: 134 QINKFTIL-GAGNDYADFQYLNDIVK 158
           +I+      GAG   AD + +  ++ 
Sbjct: 65  RISPKIWCAGAGT-AADTEAVTQLIG 89

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261

 Score = 57.0 bits (138), Expect = 8e-10
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 10/132 (7%)

Query: 151 QYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL 210
            +L +    +    +TGT+++G+ FN GV++AAD+    G ++   +C ++ +I+     
Sbjct: 13  NFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWC 72

Query: 211 -GAGNDYADFQYLNDIVKQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWI 267
            GAG   AD + +  ++   I   +LH        +  S    L + L+  +     +  
Sbjct: 73  AGAGT-AADTEAVTQLIGSNI---ELHSLYTSREPRVVSALQMLKQHLFKYQ---GHIGA 125

Query: 268 NAFVAGMQNGEP 279
              VAG+     
Sbjct: 126 YLIVAGVDPTGS 137

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQY 221
            +  GT+ L   F GG+I+A DS    G+ +      ++++IN F +   AG   AD Q+
Sbjct: 71  KIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGG-AADCQF 129

Query: 222 LNDIVKQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
               +  +     LH   +   +   +    L+ ++Y  +     L +   + G
Sbjct: 130 WETWLGSQC---RLHELREKERISVAAASKILSNLVYQYKGA--GLSMGTMICG 178

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287

 Score = 51.7 bits (124), Expect = 5e-08
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 59  RDARSGAKNGPSLGKYHDFPNVL-PHYFRRS-------GSFSTPLTTGTSVLGLVFNGGV 110
            D  +GA     L      P +  P  F R+             +  GT+ L   F GG+
Sbjct: 28  SDFVTGASQFQRLAPSLTVPPIASPQQFLRAHTDDSRNPDCKIKIAHGTTTLAFRFQGGI 87

Query: 111 ILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIVK 158
           I+A DS    G+ +      ++++IN F +   AG   AD Q+    + 
Sbjct: 88  IVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGG-AADCQFWETWLG 135

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205

 Score = 54.5 bits (132), Expect = 3e-09
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 164 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYL 222
           ++ G S++ + F  GVIL ADS    G+ +      ++ +++       +G+  AD Q +
Sbjct: 6   VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGS-AADTQAI 64

Query: 223 NDIVKQKILDDDLHNDGFVLKPKSLH--SWLTRVLYNRRSQFDPLWINAFVAG 273
            DIV+  +             P +    S    + Y  +   D L     VAG
Sbjct: 65  ADIVQYHLELYTSQYG----TPSTETAASVFKELCYENK---DNLTAGIIVAG 110

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 95  LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYL 153
           ++ G S++ + F  GVIL ADS    G+ +      ++ +++       +G+  AD Q +
Sbjct: 6   VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGS-AADTQAI 64

Query: 154 NDIVKQKI 161
            DIV+  +
Sbjct: 65  ADIVQYHL 72

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291

 Score = 54.9 bits (132), Expect = 5e-09
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 78  PNVLPHYFRRSGSFSTP---LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQ 134
           P +LP         +     L  GT+++ L + GGV++A D     G+M+   D  ++  
Sbjct: 34  PELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYI 93

Query: 135 INKFTILGAGNDYADFQYLNDIVKQKI 161
            + +T  G     A       +   ++
Sbjct: 94  TDDYTATGIAGTAAVAVEFARLYAVEL 120

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291

 Score = 53.8 bits (129), Expect = 1e-08
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
            L  GT+++ L + GGV++A D     G+M+   D  ++   + +T  G     A     
Sbjct: 53  QLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEF 112

Query: 223 NDIVKQKILDDDLH--NDGFVLKPKSLHSWLTRVLY-NRRSQFDPLWINAFVAG 273
             +   ++   + +   +G  L      + L  ++  N  +    L     +AG
Sbjct: 113 ARLYAVEL---EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAG 163

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199

 Score = 53.4 bits (129), Expect = 8e-09
 Identities = 21/109 (19%), Positives = 49/109 (44%), Gaps = 10/109 (9%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLNDIV 226
           T+++ + F+GGV++ +DS    G+ +      ++  +++      +G+  AD Q + D+ 
Sbjct: 1   TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGS-AADAQAIADMA 59

Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
             ++   +LH           +  + +  + Y  R   + L  +  VAG
Sbjct: 60  AYQL---ELHGLELEEPPLVLAAANVVKNISYKYR---EDLLAHLIVAG 102

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199

 Score = 47.6 bits (114), Expect = 8e-07
 Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLNDIV 157
           T+++ + F+GGV++ +DS    G+ +      ++  +++      +G+  AD Q + D+ 
Sbjct: 1   TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGS-AADAQAIADMA 59

Query: 158 K 158
            
Sbjct: 60  A 60

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217

 Score = 53.4 bits (129), Expect = 9e-09
 Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQY 221
            L TGT+ +G+     VI+A +      + +   +  ++ QI+ +T +  AG    D Q 
Sbjct: 4   TLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGL-VGDAQV 62

Query: 222 LNDIVKQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG 277
           L   +K ++   +L+       +  +++ + L+ +L   +    P  +   V G+   
Sbjct: 63  LVRYMKAEL---ELYRLQRRVNMPIEAVATLLSNMLNQVKYM--PYMVQLLVGGIDTA 115

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 94  PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQY 152
            L TGT+ +G+     VI+A +      + +   +  ++ QI+ +T +  AG    D Q 
Sbjct: 4   TLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGL-VGDAQV 62

Query: 153 LNDIVK 158
           L   +K
Sbjct: 63  LVRYMK 68

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLNDIV 226
           T+++ + F+GGV+L ADS    GS +      ++  I+       +G+  AD Q + D V
Sbjct: 1   TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGS-AADTQAVADAV 59

Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
             ++     H           +  S    + Y  R   + L     +AG
Sbjct: 60  TYQL---GFHSIELNEPPLVHTAASLFKEMCYRYR---EDLMAGIIIAG 102

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLNDIV 157
           T+++ + F+GGV+L ADS    GS +      ++  I+       +G+  AD Q + D V
Sbjct: 1   TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGS-AADTQAVADAV 59

Query: 158 K 158
            
Sbjct: 60  T 60

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 9/109 (8%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 226
           T+ L   F GG+I+A DS    G+ +      R+++IN F +   AG   AD Q+    +
Sbjct: 1   TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGG-AADCQFWETWL 59

Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
             +     LH   +   +   +    L+ ++Y  +     L +   + G
Sbjct: 60  GSQC---RLHELREKERISVAAASKILSNLVYQYKGA--GLSMGTMICG 103

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 157
           T+ L   F GG+I+A DS    G+ +      R+++IN F +   AG   AD Q+    +
Sbjct: 1   TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGG-AADCQFWETWL 59

Query: 158 KQKI 161
             + 
Sbjct: 60  GSQC 63

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294

 Score = 51.9 bits (124), Expect = 6e-08
 Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 8/115 (6%)

Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQY 221
               GT+++ L + GGV+LA D     G+++   D   +   ++++    AG        
Sbjct: 61  LAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGT-AGIAIE 119

Query: 222 LNDIVKQKILDDDLH--NDGFVLKPKSLHSWLTRVLY-NRRSQFDPLWINAFVAG 273
           L  +   ++   + +   +G  L      + L  ++  N  +    L +   + G
Sbjct: 120 LVRLFAVEL---EHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVG 171

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294

 Score = 49.2 bits (117), Expect = 4e-07
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 77  FPNVLPHYFRRSGSFSTP--LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQ 134
                 H  R      +      GT+++ L + GGV+LA D     G+++   D   +  
Sbjct: 42  RIGHRSHSTRGGDGMESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYV 101

Query: 135 INKFTIL-GAGNDYADFQYLNDIVKQKI 161
            ++++    AG        L  +   ++
Sbjct: 102 TDEYSAAGIAGT-AGIAIELVRLFAVEL 128

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 9/109 (8%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLNDIV 226
           T+ +GLV   GV++A +     G+ +      +I QI     +  AG+   D Q+L  I+
Sbjct: 1   TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGS-VGDAQFLARII 59

Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
           K +    +L+          +++ +  + +L + R  + P  +   + G
Sbjct: 60  KIEA---NLYEIRRERKPTVRAIATLTSNLLNSYR--YFPYLVQLLIGG 103

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLNDIV 157
           T+ +GLV   GV++A +     G+ +      +I QI     +  AG+   D Q+L  I+
Sbjct: 1   TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGS-VGDAQFLARII 59

Query: 158 K 158
           K
Sbjct: 60  K 60

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 3/109 (2%), Positives = 16/109 (14%), Gaps = 9/109 (8%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLNDIV 226
           + +  +  +         +              + +      +                 
Sbjct: 2   SHMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDG-VVLAVDRRITS 60

Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
           K               +    +  +             D   + A +  
Sbjct: 61  KLVK---IRSIEKIFQIDDHVAAATSGLVADARVL--IDRARLEAQIYR 104

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 1/61 (1%), Positives = 9/61 (14%), Gaps = 2/61 (3%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG-AGNDYADFQYLNDIV 157
           + +  +  +         +              + +      +                 
Sbjct: 2   SHMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDG-VVLAVDRRITS 60

Query: 158 K 158
           K
Sbjct: 61  K 61

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 9/109 (8%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 226
           T+ L   F  GVI+AADS    G+ +      ++++IN + +   AG   AD  +   ++
Sbjct: 1   TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGG-AADCSFWERLL 59

Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
            ++     ++   +   +   +    L  ++Y  +     L +   + G
Sbjct: 60  ARQC---RIYELRNKERISVAAASKLLANMVYQYKGM--GLSMGTMICG 103

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 157
           T+ L   F  GVI+AADS    G+ +      ++++IN + +   AG   AD  +   ++
Sbjct: 1   TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGG-AADCSFWERLL 59

Query: 158 K 158
            
Sbjct: 60  A 60

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 226
           T+++G+ FN GV++AAD+    G ++   +C ++ +I+      GAG   AD + +  ++
Sbjct: 1   TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGT-AADTEAVTQLI 59

Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
              I   +LH        +  S    L + L+  +     +     VAG+     
Sbjct: 60  GSNI---ELHSLYTSREPRVVSALQMLKQHLFKYQ---GHIGAYLIVAGVDPTGS 108

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 157
           T+++G+ FN GV++AAD+    G ++   +C ++ +I+      GAG   AD + +  ++
Sbjct: 1   TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGT-AADTEAVTQLI 59

Query: 158 K 158
            
Sbjct: 60  G 60

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 226
           T+++ L + GGV+LA D     G+++   D  ++   ++++    AG        L  + 
Sbjct: 1   TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGT-AGIAIELVRLF 59

Query: 227 KQKILDDDLH--NDGFVLKPKSLHSWLTRVLY-NRRSQFDPLWINAFVAG 273
             ++   + +   +G  L      + L  ++  N  +    L +   + G
Sbjct: 60  AVEL---EHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVG 106

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 157
           T+++ L + GGV+LA D     G+++   D  ++   ++++    AG        L  + 
Sbjct: 1   TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGT-AGIAIELVRLF 59

Query: 158 K 158
            
Sbjct: 60  A 60

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 36/145 (24%), Positives = 51/145 (35%), Gaps = 37/145 (25%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 157
           T++ GLVF  GVIL AD+     S++    C +I  I       GAG   AD +    + 
Sbjct: 1   TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGV-AADTEMTTRMA 59

Query: 158 -----------KQKITPLTTGTSVLGLVF-NGGVILAA------DSAG---YY----GSM 192
                       ++    T    +   +F   G + A+      D  G   Y     GS 
Sbjct: 60  ASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSY 119

Query: 193 MRFNDCPRIMQINKFTILGAGNDYA 217
            R            FT LG+G   A
Sbjct: 120 SRL----------PFTALGSGQGAA 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	99.93
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	99.91
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	99.91
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	99.91
1iru_M	213	20S proteasome; cell cycle, immune response, prote	99.91
1iru_N	219	20S proteasome; cell cycle, immune response, prote	99.9
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	99.9
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	99.9
1iru_J	205	20S proteasome; cell cycle, immune response, prote	99.89
3h4p_a	219	Proteasome subunit beta; core particle, cytoplasm,	99.89
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	99.89
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	99.89
1iru_L	204	20S proteasome; cell cycle, immune response, prote	99.88
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	99.88
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	99.88
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	99.88
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	99.88
1iru_B	233	20S proteasome; cell cycle, immune response, prote	99.88
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	99.88
1iru_C	261	20S proteasome; cell cycle, immune response, prote	99.88
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	99.88
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	99.88
1iru_E	241	20S proteasome; cell cycle, immune response, prote	99.88
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	99.88
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	99.88
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	99.87
1iru_A	246	20S proteasome; cell cycle, immune response, prote	99.87
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	99.87
1iru_H	205	20S proteasome; cell cycle, immune response, prote	99.87
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	99.87
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	99.87
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	99.87
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	99.87
1iru_K	201	20S proteasome; cell cycle, immune response, prote	99.87
1iru_I	234	20S proteasome; cell cycle, immune response, prote	99.87
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	99.87
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	99.86
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	99.86
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	99.86
1iru_G	254	20S proteasome; cell cycle, immune response, prote	99.86
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	99.85
1iru_D	248	20S proteasome; cell cycle, immune response, prote	99.85
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	99.85
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	99.85
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	99.85
1iru_F	263	20S proteasome; cell cycle, immune response, prote	99.85
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	99.84
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	99.84
1iru_N	219	20S proteasome; cell cycle, immune response, prote	99.82
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	99.81
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	99.81
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	99.8
1iru_B	233	20S proteasome; cell cycle, immune response, prote	99.79
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	99.78
1iru_M	213	20S proteasome; cell cycle, immune response, prote	99.78
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	99.78
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	99.77
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	99.77
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	99.77
1iru_A	246	20S proteasome; cell cycle, immune response, prote	99.77
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	99.77
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	99.77
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	99.77
1iru_G	254	20S proteasome; cell cycle, immune response, prote	99.77
1iru_E	241	20S proteasome; cell cycle, immune response, prote	99.76
1iru_D	248	20S proteasome; cell cycle, immune response, prote	99.76
3h4p_a	219	Proteasome subunit beta; core particle, cytoplasm,	99.76
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	99.76
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	99.76
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	99.75
1iru_C	261	20S proteasome; cell cycle, immune response, prote	99.75
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	99.74
1iru_J	205	20S proteasome; cell cycle, immune response, prote	99.74
1iru_L	204	20S proteasome; cell cycle, immune response, prote	99.74
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	99.74
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	99.74
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	99.74
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	99.74
1iru_F	263	20S proteasome; cell cycle, immune response, prote	99.73
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	99.73
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	99.72
1iru_K	201	20S proteasome; cell cycle, immune response, prote	99.72
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	99.72
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	99.72
1iru_H	205	20S proteasome; cell cycle, immune response, prote	99.72
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	99.71
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	99.71
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	99.7
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	99.7
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	99.7
1iru_I	234	20S proteasome; cell cycle, immune response, prote	99.7
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	99.68
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	99.67
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	99.45
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	99.39
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	99.39

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5

Probab=99.93  E-value=1.7e-26  Score=208.52  Aligned_cols=173  Identities=20%  Similarity=0.277  Sum_probs=126.3

Q ss_pred             CC-CCeeecCCCCCCCcc--ccCC-----CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceE
Q psy9489          69 PS-LGKYHDFPNVLPHYF--RRSG-----SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTI  140 (279)
Q Consensus        69 ~~-~~~f~~~~~~~~~~~--~~~~-----~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~  140 (279)
                      ++ |..|..||..+|.+|  .+..     ....++.+|||+|||+++||||||+|+|.+.|.++.+++.+||++|+++++
T Consensus        38 ~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~  117 (287)
T 3nzj_K           38 QRLAPSLTVPPIASPQQFLRAHTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLL  117 (287)
T ss_dssp             --------------------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEE
T ss_pred             CCCCcccccCCCCCHHHHHHHhcccccccchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEE
Confidence            44 778999999999998  2222     234578999999999999999999999999999999999999999999999


Q ss_pred             eeecCcccccccchhhhhccc-----------------------------ccccceeeEEEEE-eCCcEEEEEcCCCccC
Q psy9489         141 LGAGNDYADFQYLNDIVKQKI-----------------------------TPLTTGTSVLGLV-FNGGVILAADSAGYYG  190 (279)
Q Consensus       141 ~~~sG~~aD~~~l~~~l~~~~-----------------------------~pi~~g~tvlgi~-~~~gvlia~D~~gs~g  190 (279)
                      +++||..||+|.|.+.++...                             .|+..+..+.|++ ..++.|+..|+.|++ 
T Consensus       118 ~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~-  196 (287)
T 3nzj_K          118 GTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTR-  196 (287)
T ss_dssp             EECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCE-
T ss_pred             EEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceE-
Confidence            999999999999999988511                             1222223344787 457899999999987 


Q ss_pred             ceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         191 SMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       191 ~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                                   +..++++.|+|+    +++..+|++.|+++|+++|+.++..+++.+++.|+.++..
T Consensus       197 -------------~~~~~~AiGsgs----~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~  248 (287)
T 3nzj_K          197 -------------LKGDIFCVGSGQ----TFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGG  248 (287)
T ss_dssp             -------------EECSEEEESTTH----HHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred             -------------EEcCeEEEecch----HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCC
Confidence                         677899999999    9999999999999999999999999999999999988753

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*

Probab=99.91  E-value=3.9e-25  Score=197.72  Aligned_cols=171  Identities=20%  Similarity=0.288  Sum_probs=130.8

Q ss_pred             CCCCeee-cCCCCC-CCccccCCCcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCc
Q psy9489          69 PSLGKYH-DFPNVL-PHYFRRSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND  146 (279)
Q Consensus        69 ~~~~~f~-~~~~~~-~~~~~~~~~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~  146 (279)
                      | |++|| .||... +....|..++++|+++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||.
T Consensus        11 ~-~~~~~~~~~~~~~~~~~~~~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~   89 (266)
T 1g0u_M           11 P-ADSTYGAYNTQIANAGASPMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGD   89 (266)
T ss_dssp             ------------------------CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEE
T ss_pred             C-CccccccCCcccccccccchhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccC
Confidence            5 88888 777553 21113567789999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhhhcc-----c--------cccc---------------------ceee--EEEEEeC-CcEEEEEcCCCcc
Q psy9489         147 YADFQYLNDIVKQK-----I--------TPLT---------------------TGTS--VLGLVFN-GGVILAADSAGYY  189 (279)
Q Consensus       147 ~aD~~~l~~~l~~~-----~--------~pi~---------------------~g~t--vlgi~~~-~gvlia~D~~gs~  189 (279)
                      .||+|.|.+.++..     .        ++++                     .+..  +.|++.+ ++.|+..|+.|++
T Consensus        90 ~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~  169 (266)
T 1g0u_M           90 ISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVT  169 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCE
T ss_pred             HHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCE
Confidence            99999999987751     1        1111                     1223  2377654 7899999999987


Q ss_pred             CceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccc-----ccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         190 GSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILD-----DDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       190 g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~-----~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                                    ...++.+.|+|+    +++..+||+.|++     +|+++|+.++..+++...+.++.++.
T Consensus       170 --------------~~~~~~aiGsgs----~~a~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg  225 (266)
T 1g0u_M          170 --------------YSSPTLATGFGA----HMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSS  225 (266)
T ss_dssp             --------------ECCSEEECTHHH----HTHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCC
T ss_pred             --------------EeCCEEEEccCH----HHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence                          667899999999    9999999999998     89999999999999999999988764

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2

Probab=99.91  E-value=1.7e-24  Score=192.92  Aligned_cols=149  Identities=17%  Similarity=0.265  Sum_probs=125.4

Q ss_pred             CcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------cc
Q psy9489          92 STPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TP  163 (279)
Q Consensus        92 ~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~p  163 (279)
                      ++++++|+|+|||+++||||||+|+|.+.|.++.+++++||++|++|+++++||..||+|.+.+.++.+.        ++
T Consensus        23 ~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~  102 (261)
T 3nzj_H           23 PKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSRE  102 (261)
T ss_dssp             -------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             CcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCC
Confidence            5688999999999999999999999999999999999999999999999999999999999999988521        11


Q ss_pred             cc------------------ceee--EEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHH
Q psy9489         164 LT------------------TGTS--VLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLN  223 (279)
Q Consensus       164 i~------------------~g~t--vlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~  223 (279)
                      ++                  .+..  +.|++.+++.|+..|+.|++              ...++.+.|+|+    +++.
T Consensus       103 ~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~--------------~~~~~~aiGsgs----~~a~  164 (261)
T 3nzj_H          103 PRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGST--------------DVGYYLSLGSGS----LAAM  164 (261)
T ss_dssp             CCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCE--------------EECSEEEESTTH----HHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCcccEEEEEEEEeCCCCEEEEECCCccE--------------EecCeEEeccch----HHHH
Confidence            11                  2233  33787777899999999987              677899999999    9999


Q ss_pred             HHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         224 DIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       224 ~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      .+||+.|+++|+++|+.++..++|.+.+.+++++.
T Consensus       165 ~~Le~~~~~~ms~eEA~~la~~al~~a~~rD~~sg  199 (261)
T 3nzj_H          165 AVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSG  199 (261)
T ss_dssp             HHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHhhCCCCC
Confidence            99999999999999999999999999999988764

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H

Probab=99.91  E-value=2.1e-24  Score=187.38  Aligned_cols=146  Identities=16%  Similarity=0.252  Sum_probs=125.4

Q ss_pred             CccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc------------
Q psy9489          94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI------------  161 (279)
Q Consensus        94 ~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~------------  161 (279)
                      ++.+|+|+|||+++||||||+|+|.+.|+++.+++.+||++|++++++++||..||+|.+.+.++...            
T Consensus         4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   83 (217)
T 1yar_H            4 TLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMP   83 (217)
T ss_dssp             -----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            56799999999999999999999999999999999999999999999999999999999999998510            


Q ss_pred             -----------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHH
Q psy9489         162 -----------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLND  224 (279)
Q Consensus       162 -----------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~  224 (279)
                                       .|...+..+.|++ +++.|+..|+.|++              ...++.+.|+|+    +++..
T Consensus        84 v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~gp~Ly~idp~G~~--------------~~~~~~aiGsgs----~~a~~  144 (217)
T 1yar_H           84 IEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGS--------------VEDIYASTGSGS----PFVYG  144 (217)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCEEEEEEEES-SSEEEEEECTTCCE--------------EEESEEEESTTH----HHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEEEEEC-CCCEEEEECCCCCe--------------EecCEEEEcCCH----HHHHH
Confidence                             1332333344888 88999999999987              566899999999    99999


Q ss_pred             HHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         225 IVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       225 ~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      +|++.|+++++.+|+.++..+++...+.++.++.
T Consensus       145 ~Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~  178 (217)
T 1yar_H          145 VLESQYSEKMTVDEGVDLVIRAISAAKQRDSASG  178 (217)
T ss_dssp             HHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             HHHhhcccCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            9999999999999999999999999999987764

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L

Probab=99.91  E-value=3.9e-24  Score=184.95  Aligned_cols=149  Identities=19%  Similarity=0.244  Sum_probs=128.0

Q ss_pred             CcCcc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------
Q psy9489          92 STPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI---------  161 (279)
Q Consensus        92 ~~~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~---------  161 (279)
                      |+|+. +|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..||+|.|.+.++...         
T Consensus         2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~   81 (213)
T 1iru_M            2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK   81 (213)
T ss_dssp             CCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            56766 99999999999999999999999999999999999999999999999999999999999998511         


Q ss_pred             --------------------ccccceeeEEEEEeCC-cEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHH
Q psy9489         162 --------------------TPLTTGTSVLGLVFNG-GVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQ  220 (279)
Q Consensus       162 --------------------~pi~~g~tvlgi~~~~-gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~  220 (279)
                                          .|+..+..+.|++.++ +.|+..|+.|++              ...++.+.|+|+    +
T Consensus        82 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~--------------~~~~~~aiGsg~----~  143 (213)
T 1iru_M           82 AMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSY--------------QRDSFKAGGSAS----A  143 (213)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCE--------------EEESEEEEETTH----H
T ss_pred             CCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCE--------------EECCEEEEeeCH----H
Confidence                                1222223333776544 789999999987              567899999999    9


Q ss_pred             HHHHHHHhh---------cccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         221 YLNDIVKQK---------ILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       221 ~l~~~l~~~---------~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      ++..+|++.         |+++++++|+.++..+++.+++.++.++.
T Consensus       144 ~a~~~Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~  190 (213)
T 1iru_M          144 MLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTG  190 (213)
T ss_dssp             HHHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSC
T ss_pred             HHHHHHhhccccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccC
Confidence            999999999         77789999999999999999999887764

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M

Probab=99.90  E-value=1.7e-24  Score=188.12  Aligned_cols=150  Identities=30%  Similarity=0.451  Sum_probs=130.7

Q ss_pred             CcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------c
Q psy9489          92 STPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI---------T  162 (279)
Q Consensus        92 ~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~---------~  162 (279)
                      ++|+.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..||+|.|.+.++.+.         +
T Consensus         2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (219)
T 1iru_N            2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH   81 (219)
T ss_dssp             CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999887511         1


Q ss_pred             -----------------------cccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhH
Q psy9489         163 -----------------------PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADF  219 (279)
Q Consensus       163 -----------------------pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~  219 (279)
                                             |+..+..+.|++..++.|+..|+.|++              ...++.+.|+|+    
T Consensus        82 ~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~--------------~~~~~~aiGsgs----  143 (219)
T 1iru_N           82 SYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVA--------------YEAPSLATGYGA----  143 (219)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCE--------------EECSEEECTTHH----
T ss_pred             CCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECCCCEEEEECCCCCe--------------EECCeEEECccH----
Confidence                                   121222333787667899999999987              667899999999    


Q ss_pred             HHHHHHHHhhccc--ccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         220 QYLNDIVKQKILD--DDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       220 ~~l~~~l~~~~~~--~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      +++..+|++.|++  +|+++|+.++..+++.+.+.++.++..
T Consensus       144 ~~a~~~Le~~~~~~~~mt~eea~~l~~~al~~~~~~d~~sg~  185 (219)
T 1iru_N          144 YLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYN  185 (219)
T ss_dssp             HHTHHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcCcCCC
Confidence            9999999999999  999999999999999999999887643

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...

Probab=99.90  E-value=5.6e-24  Score=183.01  Aligned_cols=149  Identities=16%  Similarity=0.200  Sum_probs=129.8

Q ss_pred             CcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------c-
Q psy9489          92 STPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------T-  162 (279)
Q Consensus        92 ~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~-  162 (279)
                      ++++++|+|+|||+++||||||+|+|.+.++++.+++.+||++|++|+++++||..||++.+.+.++.+.        + 
T Consensus         3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~   82 (205)
T 1ryp_H            3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTP   82 (205)
T ss_dssp             TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999988621        1 


Q ss_pred             ccc----------------ceeeEE--EEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHH
Q psy9489         163 PLT----------------TGTSVL--GLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLN  223 (279)
Q Consensus       163 pi~----------------~g~tvl--gi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~  223 (279)
                      ++.                .+..+|  |++. +++.|+..|+.|++              ...++.+.|+|+    +++.
T Consensus        83 ~v~~la~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~~G~~--------------~~~~~~aiGsgs----~~a~  144 (205)
T 1ryp_H           83 STETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSV--------------HKLPYAIAGSGS----TFIY  144 (205)
T ss_dssp             CHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCC--------------EEESEEEESGGG----GGGH
T ss_pred             CHHHHHHHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECCCccE--------------EecCEEEEEecH----HHHH
Confidence            110                233333  7764 56899999999987              567899999999    9999


Q ss_pred             HHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         224 DIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       224 ~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      .+|++.|+++|+++|+.++..+++.+++.++.++.
T Consensus       145 ~~Le~~~~~~~s~eea~~l~~~al~~a~~~d~~sg  179 (205)
T 1ryp_H          145 GYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG  179 (205)
T ss_dssp             HHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCC
T ss_pred             HHHHhccCCCCCHHHHHHHHHHHHHHHHHhCCccC
Confidence            99999999999999999999999999999988764

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...

Probab=99.90  E-value=1.2e-23  Score=183.31  Aligned_cols=150  Identities=18%  Similarity=0.173  Sum_probs=128.0

Q ss_pred             CcCcc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc--------c-
Q psy9489          92 STPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------I-  161 (279)
Q Consensus        92 ~~~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------~-  161 (279)
                      |+|+. +|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..||++.|.+.++..        . 
T Consensus         2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~   81 (222)
T 1ryp_M            2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHND   81 (222)
T ss_dssp             CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            55665 9999999999999999999999999999999999999999999999999999999999998741        1 


Q ss_pred             cccc-------------------cee--eEEEEEeCC-cEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhH
Q psy9489         162 TPLT-------------------TGT--SVLGLVFNG-GVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADF  219 (279)
Q Consensus       162 ~pi~-------------------~g~--tvlgi~~~~-gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~  219 (279)
                      ++++                   .+.  .+.|++.++ +.|+..|+.|++              ...++.+.|+|+    
T Consensus        82 ~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~--------------~~~~~~a~Gsg~----  143 (222)
T 1ryp_M           82 KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSY--------------EREQCRAGGAAA----  143 (222)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCE--------------EEESEEEEETTH----
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCE--------------EecCEEEEcCcH----
Confidence            2221                   122  333776444 799999999987              567899999999    


Q ss_pred             HHHHHHHHhh-----------------cccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         220 QYLNDIVKQK-----------------ILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       220 ~~l~~~l~~~-----------------~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      +++..+|++.                 |+++++++|+.++..+++.+++.+++++..
T Consensus       144 ~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~  200 (222)
T 1ryp_M          144 SLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGD  200 (222)
T ss_dssp             HHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred             HHHHHHHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence            9999999998                 778899999999999999999999887653

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I

Probab=99.89  E-value=2.3e-23  Score=179.12  Aligned_cols=149  Identities=14%  Similarity=0.111  Sum_probs=125.5

Q ss_pred             cCcc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------c-
Q psy9489          93 TPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------T-  162 (279)
Q Consensus        93 ~~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~-  162 (279)
                      +|+. +|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..||+|.|.+.++.+.        + 
T Consensus         2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (205)
T 1iru_J            2 SIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQ   81 (205)
T ss_dssp             CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CcccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            3444 89999999999999999999999999999999999999999999999999999999999988521        1 


Q ss_pred             --------------------cccceeeEEEEEe--CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHH
Q psy9489         163 --------------------PLTTGTSVLGLVF--NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQ  220 (279)
Q Consensus       163 --------------------pi~~g~tvlgi~~--~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~  220 (279)
                                          |+..+..+.|++.  +++.|+..|+.|++             .....+.+.|+|+    +
T Consensus        82 ~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~-------------~~~~~~~aiG~gs----~  144 (205)
T 1iru_J           82 IKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCP-------------MVTDDFVVSGTCA----E  144 (205)
T ss_dssp             CCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCE-------------EECSSEEEEETTH----H
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCc-------------cccCCeeEeeeCH----H
Confidence                                2222233347763  57899999999975             1234678999999    9


Q ss_pred             HHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         221 YLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       221 ~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      ++..+|++.|+++++++|+.++..+++.+.+.++.++.
T Consensus       145 ~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~  182 (205)
T 1iru_J          145 QMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSG  182 (205)
T ss_dssp             HHHHHHHHHCCSSCCHHHHHHHHHHHHHHHGGGBTTSC
T ss_pred             HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHhCcccC
Confidence            99999999999999999999999999999888877654

>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=99.89  E-value=1.3e-23  Score=182.72  Aligned_cols=143  Identities=17%  Similarity=0.253  Sum_probs=124.3

Q ss_pred             CccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc----------------
Q psy9489          98 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI----------------  161 (279)
Q Consensus        98 G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~----------------  161 (279)
                      |+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..||+|.|.+.++...                
T Consensus         1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l   80 (219)
T 3h4p_a            1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC   80 (219)
T ss_dssp             -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred             CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            7999999999999999999999999999999999999999999999999999999999998511                


Q ss_pred             -------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEeccc-EEEEeccChhhHHHHHHHH
Q psy9489         162 -------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKF-TILGAGNDYADFQYLNDIV  226 (279)
Q Consensus       162 -------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~-~~~~gSG~~aD~~~l~~~l  226 (279)
                                   .|+..+..+.|++. +++.|+..|+.|++              ...+ +.+.|+|+    +++..+|
T Consensus        81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~~aiG~gs----~~a~~~L  142 (219)
T 3h4p_a           81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGM--------------NEEKTFTATGSGS----PIAYGVL  142 (219)
T ss_dssp             HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCE--------------EECSSEEEESTTH----HHHHHHH
T ss_pred             HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCce--------------EecCCEEEEcCCH----HHHHHHH
Confidence                         13223333448876 57899999999987              5566 99999999    9999999


Q ss_pred             HhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       227 ~~~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      ++.|+++++++|+.++..++|.+.+.++.++.
T Consensus       143 e~~~~~~ms~eea~~la~~al~~~~~rd~~sg  174 (219)
T 3h4p_a          143 EAGYDRDMSVEEGIKLALNALKSAMERDTFSG  174 (219)
T ss_dssp             HTSCCTTCCHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Confidence            99999999999999999999999998877664

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...

Probab=99.89  E-value=1.2e-23  Score=184.47  Aligned_cols=150  Identities=23%  Similarity=0.354  Sum_probs=129.8

Q ss_pred             CcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc-----c-----
Q psy9489          92 STPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK-----I-----  161 (279)
Q Consensus        92 ~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~-----~-----  161 (279)
                      ++|+++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..||+|.|.+.++..     .     
T Consensus         2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (233)
T 1ryp_N            2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA   81 (233)
T ss_dssp             CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred             cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence            578999999999999999999999999999999999999999999999999999999999999987741     1     


Q ss_pred             ---cccc---------------------ceee--EEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489         162 ---TPLT---------------------TGTS--VLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN  214 (279)
Q Consensus       162 ---~pi~---------------------~g~t--vlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG  214 (279)
                         ++++                     .+..  +.|++.+ ++.|+..|+.|++              ...++.+.|+|
T Consensus        82 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~--------------~~~~~~aiGsg  147 (233)
T 1ryp_N           82 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVT--------------YSSPTLATGFG  147 (233)
T ss_dssp             TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCE--------------ECCSEEECTHH
T ss_pred             hcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCe--------------EEcCEEEECcC
Confidence               1111                     1222  3377654 7899999999987              66789999999


Q ss_pred             ChhhHHHHHHHHHhhccc-----ccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         215 DYADFQYLNDIVKQKILD-----DDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       215 ~~aD~~~l~~~l~~~~~~-----~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      +    +++..+|++.|++     +|+++|+.++..+++...+.++.++..
T Consensus       148 s----~~a~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~  193 (233)
T 1ryp_N          148 A----HMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSR  193 (233)
T ss_dssp             H----HHHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred             H----HHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence            9    9999999999998     899999999999999999999887643

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...

Probab=99.89  E-value=9.3e-24  Score=186.31  Aligned_cols=146  Identities=11%  Similarity=0.070  Sum_probs=125.9

Q ss_pred             CcCcCccC-CccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc--------
Q psy9489          90 SFSTPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------  160 (279)
Q Consensus        90 ~~~~~~~~-G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------  160 (279)
                      .+++++++ |+|+|||+++||||||+|+|.+ ++++.+++.+||++|++|+++++||+.||+|.|.+.++..        
T Consensus        21 YA~~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~   99 (243)
T 1ryp_A           21 YAFKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKY   99 (243)
T ss_dssp             HHHHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999 9999999999999999999988 9999999999999999999999999999999999998851        


Q ss_pred             -------------------------cccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489         161 -------------------------ITPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN  214 (279)
Q Consensus       161 -------------------------~~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG  214 (279)
                                               ..|+..+..+.|++. .++.|+..|+.|++              ...++.+.|+|
T Consensus       100 ~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~--------------~~~~~~a~G~g  165 (243)
T 1ryp_A          100 GYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYY--------------VGYKATATGPK  165 (243)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCE--------------EEBSEEEESTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCE--------------EEEEEEEECCC
Confidence                                     113323334448875 57899999999987              66789999999


Q ss_pred             ChhhHHHHHHHHHhhccc-------ccccccCCCCCHHHHHHHHHHH
Q psy9489         215 DYADFQYLNDIVKQKILD-------DDLHNDGFVLKPKSLHSWLTRV  254 (279)
Q Consensus       215 ~~aD~~~l~~~l~~~~~~-------~~~~ee~~~l~~~~la~~isr~  254 (279)
                      +    +.+..+|++.|++       +|+++|+.++..+++.+.+.++
T Consensus       166 s----~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd  208 (243)
T 1ryp_A          166 Q----QEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE  208 (243)
T ss_dssp             H----HHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC
T ss_pred             c----HHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc
Confidence            9    9999999999998       8888888888888888887765

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K

Probab=99.88  E-value=5.3e-23  Score=176.69  Aligned_cols=142  Identities=21%  Similarity=0.280  Sum_probs=124.0

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------------  161 (279)
                      ||+|||+++||||||+|+|.+.|+++.+++.+||++|++|+++++||..||+|.|.+.++.+.                 
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (204)
T 1iru_L            1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS   80 (204)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999987511                 


Q ss_pred             ----------c--cccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhh
Q psy9489         162 ----------T--PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK  229 (279)
Q Consensus       162 ----------~--pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~  229 (279)
                                +  |+..+..+.|++.+++.++..|+.|++              ...++.+.|+|+    +++..+|++.
T Consensus        81 ~~l~~~~~~~r~~~~~v~~lvaG~D~~gp~Ly~idp~G~~--------------~~~~~~aiG~gs----~~a~~~Le~~  142 (204)
T 1iru_L           81 KLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNR--------------ISGATFSVGSGS----VYAYGVMDRG  142 (204)
T ss_dssp             HHHHHHHHTTTTSCCCBEEEEEEECSSSEEEEEEESSSCE--------------EECSEEEESTTH----HHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCeeEEEEEEEEeCCCCEEEEECCCCcE--------------EEeCCEEEEcCH----HHHHHHHhcc
Confidence                      1  111223334777678899999999987              667889999999    9999999999


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       230 ~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      |+++++.+|+.++..+++.+.+.++.++.
T Consensus       143 ~~~~~s~eea~~l~~~al~~~~~rd~~s~  171 (204)
T 1iru_L          143 YSYDLEVEQAYDLARRAIYQATYRDAYSG  171 (204)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHBTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCccCC
Confidence            99999999999999999999999887664

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H

Probab=99.88  E-value=5.1e-23  Score=180.74  Aligned_cols=142  Identities=20%  Similarity=0.206  Sum_probs=125.0

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------cccc-----
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TPLT-----  165 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~pi~-----  165 (279)
                      ||+|||+++||||||+|+|.+.|.++.+++++||++|++|+++++||..||+|.+.+.++.+.        ++++     
T Consensus         1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (234)
T 3unf_H            1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT   80 (234)
T ss_dssp             CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred             CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence            799999999999999999999999999999999999999999999999999999999988521        1111     


Q ss_pred             -------------ceee--EEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhc
Q psy9489         166 -------------TGTS--VLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI  230 (279)
Q Consensus       166 -------------~g~t--vlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~  230 (279)
                                   .+..  +.|++.+++.|+..|+.|++              ...++.+.|+|+    +++..+|++.|
T Consensus        81 ~~l~~~l~~~~~p~~v~llvaG~D~~gp~Ly~idp~G~~--------------~~~~~~aiGsgs----~~a~~~Le~~~  142 (234)
T 3unf_H           81 RILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSY--------------SRLPFTALGSGQ----GAAVALLEDRF  142 (234)
T ss_dssp             HHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCE--------------EECSEEEEETTH----HHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCCccEEEEEEEEeCCCCEEEEECCCCCE--------------EeccEEEEcCCc----hhhHHHHHhcc
Confidence                         2233  33787777899999999987              678899999999    99999999999


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         231 LDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       231 ~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      +++|+++|+.++..+++.+.+.+++++.
T Consensus       143 ~~~ms~eeA~~la~~al~~~~~~D~~sg  170 (234)
T 3unf_H          143 QPNMTLEAAQELLVEAITAGILSDLGSG  170 (234)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHBTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCCCC
Confidence            9999999999999999999999988764

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A

Probab=99.88  E-value=1.6e-23  Score=183.65  Aligned_cols=147  Identities=18%  Similarity=0.205  Sum_probs=123.3

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      .+++++++|||+|||+++||||||+|+|.+.+ ++.+++.+||++|++|+++++||..||+|.+.+.++.+.        
T Consensus        26 ya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  104 (233)
T 1yar_A           26 YAREAVKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYG  104 (233)
T ss_dssp             HHHHHHTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            34678999999999999999999999998875 788899999999999999999999999999999988510        


Q ss_pred             -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                               +|...+..+.|++.+++.|+..|+.|++              +..++.+.|+|+ 
T Consensus       105 ~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~--------------~~~~~~aiG~gs-  169 (233)
T 1yar_A          105 SLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTI--------------NEYKATAIGSGK-  169 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCE--------------EEBSEEEESTTH-
T ss_pred             CCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCE--------------EeeeEEEEcCCc-
Confidence                                     1222223333776668899999999987              667899999999 


Q ss_pred             hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHH
Q psy9489         217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVL  255 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~l  255 (279)
                         +++..+|++.|+++++++|+.++..+++.+.+.+++
T Consensus       170 ---~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~  205 (233)
T 1yar_A          170 ---DAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE  205 (233)
T ss_dssp             ---HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC
T ss_pred             ---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC
Confidence               999999999999888888888888888777666543

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...

Probab=99.88  E-value=1.4e-23  Score=185.26  Aligned_cols=146  Identities=15%  Similarity=0.170  Sum_probs=123.9

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      ++++++++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..||+|.|.+.++...        
T Consensus        23 yA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  102 (244)
T 1ryp_C           23 YALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYN  102 (244)
T ss_dssp             HHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHC
Confidence            456789999999999999999999999999888877999999999999999999999999999999987511        


Q ss_pred             -------------------------ccccceeeEEEEE-eCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489         162 -------------------------TPLTTGTSVLGLV-FNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND  215 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~-~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~  215 (279)
                                               +|+..+..+.|++ .+++.|+..|+.|++              ...++.+.|+|+
T Consensus       103 ~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~aiGsgs  168 (244)
T 1ryp_C          103 EDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNY--------------TGWKAISVGANT  168 (244)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCE--------------EEBSEEEESTTH
T ss_pred             CCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccE--------------EeeeEEEECCCc
Confidence                                     1222223334887 567899999999987              667899999999


Q ss_pred             hhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489         216 YADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR  253 (279)
Q Consensus       216 ~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr  253 (279)
                          +++..+|++.|+++|+++|+.++..+++.+.+.+
T Consensus       169 ----~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~r  202 (244)
T 1ryp_C          169 ----SAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDS  202 (244)
T ss_dssp             ----HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred             ----HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhcc
Confidence                9999999999998888888888887777776654

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4

Probab=99.88  E-value=4.5e-23  Score=176.91  Aligned_cols=142  Identities=18%  Similarity=0.254  Sum_probs=123.6

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------------  161 (279)
                      ||+|||+++||||||+|+|.+.|+++.+++.+||++|++|+++++||..||+|.+.+.++...                 
T Consensus         1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (202)
T 1j2q_H            1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA   80 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999998511                 


Q ss_pred             ------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEeccc-EEEEeccChhhHHHHHHHHHh
Q psy9489         162 ------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKF-TILGAGNDYADFQYLNDIVKQ  228 (279)
Q Consensus       162 ------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~-~~~~gSG~~aD~~~l~~~l~~  228 (279)
                                  .|...+..+.|++.+++.|+..|+.|++              ...+ +.+.|+|+    +++..+|++
T Consensus        81 ~~l~~~~~~~r~rp~~~~~lvaG~D~~gp~Ly~id~~G~~--------------~~~~~~~aiG~g~----~~a~~~Le~  142 (202)
T 1j2q_H           81 TLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGA--------------IEEKDIVATGSGS----LTAYGVLED  142 (202)
T ss_dssp             HHHHHHHHHTTTSCCCEEEEEEEEETTEEEEEEECTTCCE--------------EEESSEEEESTTH----HHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCceEEEEEEEEeCCCCEEEEECCCCCe--------------eecCCEEEEcCCH----HHHHHHHHh
Confidence                        1322223333787667899999999987              5556 99999999    999999999


Q ss_pred             hcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         229 KILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       229 ~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      .|+++|+++|+.++..+++...+.++.++.
T Consensus       143 ~~~~~~s~eea~~la~~al~~~~~~d~~s~  172 (202)
T 1j2q_H          143 RFTPEIGVDEAVELAVRAIYSAMKRDSASG  172 (202)
T ss_dssp             HCCTTCCHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred             hcCCCcCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            999999999999999999999888877654

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A

Probab=99.88  E-value=8.5e-24  Score=185.39  Aligned_cols=146  Identities=14%  Similarity=0.118  Sum_probs=123.1

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      .+++++++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|+++++||..||+|.|.+.++.+.        
T Consensus        23 ya~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  101 (233)
T 1iru_B           23 YALAAVAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQ  101 (233)
T ss_dssp             HHHHHHHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHC
Confidence            356788999999999999999999999987 78999999999999999999999999999999999987510        


Q ss_pred             -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                               +|...+..+.|++.+++.|+..|+.|++              +..++.+.|+|+ 
T Consensus       102 ~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~--------------~~~~~~aiG~gs-  166 (233)
T 1iru_B          102 EPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAY--------------FAWKATAMGKNY-  166 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCE--------------EEBSEEEESTTH-
T ss_pred             CCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCE--------------EEeeEEEECCCC-
Confidence                                     1222223333787667899999999987              667899999999 


Q ss_pred             hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHH
Q psy9489         217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRV  254 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~  254 (279)
                         +++..+|++.|+++|+++|+.++..+++.+.+.++
T Consensus       167 ---~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d  201 (233)
T 1iru_B          167 ---VNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ  201 (233)
T ss_dssp             ---HHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC
T ss_pred             ---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc
Confidence               99999999999988888888887777777666554

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H

Probab=99.88  E-value=5e-23  Score=186.38  Aligned_cols=150  Identities=15%  Similarity=0.175  Sum_probs=128.7

Q ss_pred             cCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------
Q psy9489          91 FSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI---------  161 (279)
Q Consensus        91 ~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~---------  161 (279)
                      +++++.+|||+|||+++||||||+|+|.+.|+++.+++++||++|++++++++||..+|++.|.+.++...         
T Consensus        58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~  137 (294)
T 1q5r_H           58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV  137 (294)
T ss_dssp             --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence            57789999999999999999999999999999999999999999999999999999999999999988511         


Q ss_pred             -----------------------ccccceeeEEEEEeC-C-----cEEEEEcCCCccCceeeecCCCceEEecc--cEEE
Q psy9489         162 -----------------------TPLTTGTSVLGLVFN-G-----GVILAADSAGYYGSMMRFNDCPRIMQINK--FTIL  210 (279)
Q Consensus       162 -----------------------~pi~~g~tvlgi~~~-~-----gvlia~D~~gs~g~li~~~~~~kI~~i~~--~~~~  210 (279)
                                             +|+.....+.|++.+ +     +.|+..|+.|++              +..  ++.+
T Consensus       138 ~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~--------------~e~~~~~~A  203 (294)
T 1q5r_H          138 PLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGR--------------YEERAGYHA  203 (294)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCE--------------EECCSSEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeE--------------EecCCCeEE
Confidence                                   121111223377654 4     689999999976              555  7999


Q ss_pred             EeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         211 GAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       211 ~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      .|+|+    +++..+|++.|+++++++|+.++..++|...+.+++++.
T Consensus       204 iGsgs----~~a~~~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG  247 (294)
T 1q5r_H          204 VGSGS----LFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATG  247 (294)
T ss_dssp             ESTTH----HHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred             EecCc----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccccC
Confidence            99999    999999999999999999999999999999999988863

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B

Probab=99.88  E-value=1.5e-23  Score=186.92  Aligned_cols=150  Identities=16%  Similarity=0.137  Sum_probs=126.8

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      ++++++++|||+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..||++.|.+.++...        
T Consensus        23 YA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  102 (261)
T 1iru_C           23 YAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQ  102 (261)
T ss_dssp             HHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHC
Confidence            356789999999999999999999999999999998888999999999999999999999999999987511        


Q ss_pred             -------------------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489         162 -------------------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND  215 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~  215 (279)
                                               +|+..+..+.|++. .++.|+..|+.|++              +..++.+.|+|+
T Consensus       103 ~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~aiGsgs  168 (261)
T 1iru_C          103 EPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNY--------------GGWKATCIGNNS  168 (261)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEE--------------EECSEEEESTTT
T ss_pred             CCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceE--------------EeeeeEEeCccc
Confidence                                     12222233347873 56899999999987              667899999999


Q ss_pred             hhhHHHHHHHHHhhccc-ccccccCCCCCHHHHHHHHHHHHhh
Q psy9489         216 YADFQYLNDIVKQKILD-DDLHNDGFVLKPKSLHSWLTRVLYN  257 (279)
Q Consensus       216 ~aD~~~l~~~l~~~~~~-~~~~ee~~~l~~~~la~~isr~lys  257 (279)
                          +++..+|++.|++ +|+++|+.++..+++...+.++.++
T Consensus       169 ----~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~s  207 (261)
T 1iru_C          169 ----AAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLS  207 (261)
T ss_dssp             ----THHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCC
T ss_pred             ----HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence                9999999999998 8888888888888887777665554

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...

Probab=99.88  E-value=1.1e-22  Score=175.89  Aligned_cols=142  Identities=23%  Similarity=0.303  Sum_probs=123.5

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------c--------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------T--------  162 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~--------  162 (279)
                      ||+|||+++||||||+|+|.+.|+++.+++.+||++|++|+++++||..||+|.|.+.++...        +        
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (212)
T 1ryp_L            1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS   80 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999988511        1        


Q ss_pred             -------------cccceeeEEEEE-eCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHh
Q psy9489         163 -------------PLTTGTSVLGLV-FNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ  228 (279)
Q Consensus       163 -------------pi~~g~tvlgi~-~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~  228 (279)
                                   |+..+..+.|++ .+++.|+..|+.|++              ...++.+.|+|+    +++..+|++
T Consensus        81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~aiGsgs----~~a~~~Le~  142 (212)
T 1ryp_L           81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTR--------------LKGDIFCVGSGQ----TFAYGVLDS  142 (212)
T ss_dssp             HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCE--------------EECSEEEESTTH----HHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCcee--------------EecCCEEEcCCH----HHHHHHHHh
Confidence                         221222333777 457899999999987              667888999999    999999999


Q ss_pred             hcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         229 KILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       229 ~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      .|+++|+++|+.++..+++...+.++.++.
T Consensus       143 ~~~~~~s~eea~~la~~al~~~~~rd~~s~  172 (212)
T 1ryp_L          143 NYKWDLSVEDALYLGKRSILAAAHRDAYSG  172 (212)
T ss_dssp             HCCTTCCHHHHHHHHHHHHHHHHHHBTTCC
T ss_pred             hCCCCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            999999999999999999999999887654

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...

Probab=99.88  E-value=3e-23  Score=182.88  Aligned_cols=145  Identities=12%  Similarity=0.119  Sum_probs=122.8

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK---------  160 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~---------  160 (279)
                      .+++++++|||+|||+++||||||+|+|.+.+.++ +++.+||++|++|+++++||..||+|.+.+.++..         
T Consensus        18 yA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   96 (242)
T 1ryp_E           18 YSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYD   96 (242)
T ss_dssp             HHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHC
Confidence            35678999999999999999999999999988877 89999999999999999999999999999998741         


Q ss_pred             ------------------------------cccccceeeEEEEE-eCCcEEEEEcCCCccCceeeecCCCceEEecccEE
Q psy9489         161 ------------------------------ITPLTTGTSVLGLV-FNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTI  209 (279)
Q Consensus       161 ------------------------------~~pi~~g~tvlgi~-~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~  209 (279)
                                                    .+|+..+..+.|++ .+++.|+..|+.|++              +..++.
T Consensus        97 ~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~  162 (242)
T 1ryp_E           97 EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTF--------------YRYNAK  162 (242)
T ss_dssp             SCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCE--------------EEBSEE
T ss_pred             CCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCE--------------eccCEE
Confidence                                          11222222333787 557899999999987              666899


Q ss_pred             EEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489         210 LGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR  253 (279)
Q Consensus       210 ~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr  253 (279)
                      +.|+|+    +++..+|++.|+++|+++|+.++..+++.+.+.+
T Consensus       163 aiGsgs----~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~  202 (242)
T 1ryp_E          163 AIGSGS----EGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE  202 (242)
T ss_dssp             EESTTH----HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred             EECCCC----HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc
Confidence            999999    9999999999999888888888888888777665

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D

Probab=99.88  E-value=3.1e-23  Score=182.75  Aligned_cols=145  Identities=13%  Similarity=0.088  Sum_probs=123.0

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK---------  160 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~---------  160 (279)
                      .+++++.+|||+|||+++||||||+|+|.+.+.++ +++.+||++|++|+++++||..||+|.+.+.++.+         
T Consensus        26 ya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  104 (241)
T 1iru_E           26 YDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYN  104 (241)
T ss_dssp             HHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhC
Confidence            34678899999999999999999999999988877 89999999999999999999999999999998741         


Q ss_pred             -----------------------------cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEE
Q psy9489         161 -----------------------------ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG  211 (279)
Q Consensus       161 -----------------------------~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~  211 (279)
                                                   .+|+..+..+.|++.+++.|+..|+.|++              +..++.+.
T Consensus       105 ~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~--------------~~~~~~ai  170 (241)
T 1iru_E          105 ETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTF--------------VQCDARAI  170 (241)
T ss_dssp             SCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCE--------------EEBSEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCcE--------------EecceEEE
Confidence                                         01222222333787557899999999987              66789999


Q ss_pred             eccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489         212 AGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR  253 (279)
Q Consensus       212 gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr  253 (279)
                      |+|+    +++..+|++.|+++++++|+.++..+++.+.+.+
T Consensus       171 Gsgs----~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~  208 (241)
T 1iru_E          171 GSAS----EGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE  208 (241)
T ss_dssp             STTH----HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred             CCCc----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc
Confidence            9999    9999999999999899988888888888777765

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...

Probab=99.88  E-value=1.2e-22  Score=176.89  Aligned_cols=142  Identities=15%  Similarity=0.236  Sum_probs=124.2

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------c--------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------T--------  162 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~--------  162 (279)
                      ||+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..||+|.+.+.++.+.        +        
T Consensus         1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a   80 (222)
T 1ryp_I            1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL   80 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999988521        1        


Q ss_pred             ------------cccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhc
Q psy9489         163 ------------PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI  230 (279)
Q Consensus       163 ------------pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~  230 (279)
                                  |+..+..+.|++.+++.|+..|+.|++              ...++.+.|+|+    +++..+|++.|
T Consensus        81 ~~l~~~l~~~~~p~~v~~lvaG~D~~gp~Ly~idp~G~~--------------~~~~~~aiGsgs----~~a~~~Le~~~  142 (222)
T 1ryp_I           81 QMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGST--------------DVGYYLSLGSGS----LAAMAVLESHW  142 (222)
T ss_dssp             HHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCE--------------EECSEEEESTTH----HHHHHHHHHHC
T ss_pred             HHHHHHHhhcCCCCCeeEEEEEEeCCCCEEEEECCCCCE--------------EecCEEEECCCH----HHHHHHHHhhC
Confidence                        111122233787677899999999987              677899999999    99999999999


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         231 LDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       231 ~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      +++|+++|+.++..+++.+.+.+++++.
T Consensus       143 ~~~ms~eeA~~la~~al~~~~~~d~~sg  170 (222)
T 1ryp_I          143 KQDLTKEEAIKLASDAIQAGIWNDLGSG  170 (222)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             CCCcCHHHHHHHHHHHHHHHHhccccCC
Confidence            9999999999999999999999887653

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A

Probab=99.88  E-value=1.9e-22  Score=170.23  Aligned_cols=140  Identities=12%  Similarity=0.139  Sum_probs=120.1

Q ss_pred             cCCccEEEEEeCCeEEEEEeCCCccCCc-eeeCCCCceEEe-cCceEeeecCcccccccchhhhhcccccc---------
Q psy9489          96 TTGTSVLGLVFNGGVILAADSAGYYGSM-MRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKITPL---------  164 (279)
Q Consensus        96 ~~G~t~lgi~~~~gVvlaaD~r~~~~~~-i~~~~~~Ki~~i-~~~~~~~~sG~~aD~~~l~~~l~~~~~pi---------  164 (279)
                      .+|||+|||+++||||||+|+|.+.|.+ +.+++.+||++| ++|+++++||..||++.|.+.++.+.+..         
T Consensus         3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~g~~~~~~~   82 (180)
T 2z3b_A            3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAV   82 (180)
T ss_dssp             BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            5799999999999999999999999988 999999999999 99999999999999999999988632110         


Q ss_pred             -------------cce-eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEec--ccEEEEeccChhhHHHHHHHHHh
Q psy9489         165 -------------TTG-TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN--KFTILGAGNDYADFQYLNDIVKQ  228 (279)
Q Consensus       165 -------------~~g-~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~--~~~~~~gSG~~aD~~~l~~~l~~  228 (279)
                                   ..+ ..+++   +++.|+..|+.|++              ..  .++.+.|+|+    +++...||+
T Consensus        83 ~l~~~~~~~~~~rp~~~~~lva---d~p~ly~~d~~G~~--------------~~~~~~~~a~Gsgs----~~a~~~le~  141 (180)
T 2z3b_A           83 ELAKEWRSDKVLRKLEAMLIVM---NQDTLLLVSGTGEV--------------IEPDDGILAIGSGG----NYALAAGRA  141 (180)
T ss_dssp             HHHHHHHHCTTGGGCCCCEEEE---CSSCEEEECTTCCE--------------ECCSSSEEEESTTH----HHHHHHHHH
T ss_pred             HHHHHHHhhhCcCcceEEEEEE---cCCeEEEECCCCcE--------------EEeCCCEEEECCCH----HHHHHHHHH
Confidence                         122 23445   57899999999986              54  4899999999    999999999


Q ss_pred             hccc---ccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         229 KILD---DDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       229 ~~~~---~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      .|++   +|+.+|   +..+++..++.|+.++..
T Consensus       142 ~~~~~~~~mt~ee---l~~~al~~a~~rd~~sg~  172 (180)
T 2z3b_A          142 LKKHAGESMSASE---IARAALETAGEICVYTND  172 (180)
T ss_dssp             HHHHHGGGCCHHH---HHHHHHHHHHHHCTTCCS
T ss_pred             hhhccCCCCCHHH---HHHHHHHHHHHhcCccCC
Confidence            9997   788877   577999999999998864

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=99.87  E-value=1.8e-23  Score=186.76  Aligned_cols=145  Identities=18%  Similarity=0.247  Sum_probs=124.2

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      ++++++++|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|++|+++++||..||+|.|.+.++...        
T Consensus        30 YA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~  108 (264)
T 3h4p_A           30 YAREAVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYG  108 (264)
T ss_dssp             HHHHHHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTC
T ss_pred             hHHHHHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcC
Confidence            45678999999999999999999999998865 788999999999999999999999999999999888410        


Q ss_pred             -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                               +|+..+..+.|++.+++.|+..|+.|++              +..++.+.|+|+ 
T Consensus       109 ~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~--------------~~~~~~aiGsgs-  173 (264)
T 3h4p_A          109 EEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGAL--------------IEYKATAIGSGR-  173 (264)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCC--------------EEESEEEESTTH-
T ss_pred             CCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceE--------------EecCeEEECCCH-
Confidence                                     1222223334888667899999999987              567899999999 


Q ss_pred             hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489         217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR  253 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr  253 (279)
                         +++..+|++.|+++++++++.++..++|...+.+
T Consensus       174 ---~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~  207 (264)
T 3h4p_A          174 ---PVVMELLEKEYRDDITLDEGLELAITALTKANED  207 (264)
T ss_dssp             ---HHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS
T ss_pred             ---HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc
Confidence               9999999999999999999999988888888764

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G

Probab=99.87  E-value=3.6e-23  Score=182.84  Aligned_cols=146  Identities=12%  Similarity=0.091  Sum_probs=124.2

Q ss_pred             CcCcCccC-CccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-------
Q psy9489          90 SFSTPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-------  161 (279)
Q Consensus        90 ~~~~~~~~-G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-------  161 (279)
                      .+++++++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|+++++||..||+|.|.+.++.+.       
T Consensus        27 ya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~  105 (246)
T 1iru_A           27 YAFKAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKY  105 (246)
T ss_dssp             HHHHHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHH
Confidence            34568888 9999999999999999999988 79999999999999999999999999999999999988511       


Q ss_pred             --------------------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489         162 --------------------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN  214 (279)
Q Consensus       162 --------------------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG  214 (279)
                                                +|+..+..+.|++. .++.|+..|+.|++              +..++.+.|+|
T Consensus       106 ~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~aiG~g  171 (246)
T 1iru_A          106 GYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY--------------CGFKATAAGVK  171 (246)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCE--------------EEBSEEEEETT
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeE--------------EEeeEEEECCC
Confidence                                      12222233347875 57899999999987              66789999999


Q ss_pred             ChhhHHHHHHHHHhhccc--ccccccCCCCCHHHHHHHHHHH
Q psy9489         215 DYADFQYLNDIVKQKILD--DDLHNDGFVLKPKSLHSWLTRV  254 (279)
Q Consensus       215 ~~aD~~~l~~~l~~~~~~--~~~~ee~~~l~~~~la~~isr~  254 (279)
                      +    +++..+|++.|++  +++.+|+.++..+++.+++.++
T Consensus       172 s----~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd  209 (246)
T 1iru_A          172 Q----TESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID  209 (246)
T ss_dssp             H----HHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             c----HHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc
Confidence            9    9999999999998  8888888888888888777765

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...

Probab=99.87  E-value=1.4e-22  Score=174.11  Aligned_cols=145  Identities=19%  Similarity=0.136  Sum_probs=122.5

Q ss_pred             cCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------c-----
Q psy9489          96 TTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------T-----  162 (279)
Q Consensus        96 ~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~-----  162 (279)
                      .+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+ |+++++||..||+|.|.+.++.+.        +     
T Consensus         6 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~   84 (204)
T 1ryp_J            6 INGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPE   84 (204)
T ss_dssp             SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             CCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHH
Confidence            48999999999999999999999999999999999999999 999999999999999999988521        1     


Q ss_pred             ----------------cccceeeEEEEEe--CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHH
Q psy9489         163 ----------------PLTTGTSVLGLVF--NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLND  224 (279)
Q Consensus       163 ----------------pi~~g~tvlgi~~--~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~  224 (279)
                                      |+..+..+.|++.  .++.|+..|+.|++             .....+.+.|+|+    +++..
T Consensus        85 ~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~-------------~~~~~~~aiG~gs----~~a~~  147 (204)
T 1ryp_J           85 TFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCI-------------DEAKDFIVSGTAS----DQLFG  147 (204)
T ss_dssp             HHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCE-------------ECCSSEEEEETTH----HHHHH
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCc-------------cccCceeEeccCH----HHHHH
Confidence                            2212223337764  56899999999975             1233678899999    99999


Q ss_pred             HHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         225 IVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       225 ~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      +|++.|+++++++|+.++..+++.+++.++.++.
T Consensus       148 ~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~  181 (204)
T 1ryp_J          148 MCESLYEPNLEPEDLFETISQALLNAADRDALSG  181 (204)
T ss_dssp             HHHHHCCSSCCHHHHHHHHHHHHHHHHTTBTTSC
T ss_pred             HHhhhcCCCcCHHHHHHHHHHHHHHHHHhCcccC
Confidence            9999999999999999999999999888877654

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N

Probab=99.87  E-value=1.2e-22  Score=174.50  Aligned_cols=142  Identities=20%  Similarity=0.288  Sum_probs=123.7

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------------  161 (279)
                      ||+|||+++||||||+|+|.+.++++.+++.+||++|++|+++++||..||+|.|.+.++...                 
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (205)
T 1iru_H            1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA   80 (205)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999988511                 


Q ss_pred             -----------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhh
Q psy9489         162 -----------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK  229 (279)
Q Consensus       162 -----------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~  229 (279)
                                 .|+..+..+.|++. +++.++..|+.|++              ...++.+.|+|+    +++..+|++.
T Consensus        81 ~~l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~~G~~--------------~~~~~~a~Gsgs----~~a~~~Le~~  142 (205)
T 1iru_H           81 SLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMM--------------VRQSFAIGGSGS----SYIYGYVDAT  142 (205)
T ss_dssp             HHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCC--------------EECSEEEESGGG----GGGHHHHHHH
T ss_pred             HHHHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECCCCcE--------------EecCEEEECCCH----HHHHHHHHHh
Confidence                       12222233337775 46789999999987              667899999999    9999999999


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       230 ~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      |+++|+.+|+.++..+++.+.+.++.++.
T Consensus       143 ~~~~~s~eea~~l~~~al~~~~~~d~~s~  171 (205)
T 1iru_H          143 YREGMTKEECLQFTANALALAMERDGSSG  171 (205)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHBTTCC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            99999999999999999999999887764

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...

Probab=99.87  E-value=8.1e-23  Score=180.06  Aligned_cols=145  Identities=13%  Similarity=0.133  Sum_probs=124.5

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      .+++++++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..||+|.|.+.++...        
T Consensus        20 ya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   99 (241)
T 1ryp_D           20 YALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLE   99 (241)
T ss_dssp             HHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHC
Confidence            356788999999999999999999999999999888889999999999999999999999999999988511        


Q ss_pred             -------------------------ccccceeeEEEEEe--CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489         162 -------------------------TPLTTGTSVLGLVF--NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN  214 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~--~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG  214 (279)
                                               +|+..+..+.|++.  .++.|+..|+.|++              +..++.+.|+|
T Consensus       100 ~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~--------------~~~~~~aiG~g  165 (241)
T 1ryp_D          100 DPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIY--------------SSWSAQTIGRN  165 (241)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCE--------------EEBSEEEESTT
T ss_pred             CCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCE--------------EEeeeEEECCC
Confidence                                     12222233337775  57899999999987              66678999999


Q ss_pred             ChhhHHHHHHHHHhhc---ccccccccCCCCCHHHHHHHHH
Q psy9489         215 DYADFQYLNDIVKQKI---LDDDLHNDGFVLKPKSLHSWLT  252 (279)
Q Consensus       215 ~~aD~~~l~~~l~~~~---~~~~~~ee~~~l~~~~la~~is  252 (279)
                      +    +++..+|++.|   +++|+++|+.++..+++.+.+.
T Consensus       166 s----~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~  202 (241)
T 1ryp_D          166 S----KTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ  202 (241)
T ss_dssp             H----HHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC
T ss_pred             c----HHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc
Confidence            9    99999999999   8899999999998888887775

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*

Probab=99.87  E-value=7e-23  Score=181.01  Aligned_cols=144  Identities=16%  Similarity=0.190  Sum_probs=123.0

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      .+++++++|||+|||+++||||||+|+|.+.+ ++.+++.+||++|++|+++++||..||+|.|.+.++...        
T Consensus        26 ya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  104 (246)
T 1j2p_A           26 YAREAVKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYD  104 (246)
T ss_dssp             HHHHHHHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             hHHHHHHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhC
Confidence            34668899999999999999999999998865 566899999999999999999999999999999987510        


Q ss_pred             -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                               +|+..+..+.|++ +++.|+..|+.|++              ...++.+.|+|+ 
T Consensus       105 ~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~--------------~~~~~~aiGsgs-  168 (246)
T 1j2p_A          105 IPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGAL--------------LEYKATAIGMGR-  168 (246)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCE--------------EEBSEEEESTTH-
T ss_pred             CCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceE--------------EeeeEEEECCCc-
Confidence                                     1222223334888 88999999999987              566889999999 


Q ss_pred             hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489         217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR  253 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr  253 (279)
                         +++..+|++.|+++++++|+.++..+++.+.+.+
T Consensus       169 ---~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~  202 (246)
T 1j2p_A          169 ---MAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES  202 (246)
T ss_dssp             ---HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             ---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc
Confidence               9999999999999999999999988888888775

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...

Probab=99.87  E-value=5.3e-23  Score=181.64  Aligned_cols=149  Identities=13%  Similarity=0.070  Sum_probs=123.5

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK---------  160 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~---------  160 (279)
                      .+++++++|+|+|||+++||||||+|+|.+.+.++.++ .+||++|++|+++++||..||+|.|.+.++..         
T Consensus        22 ya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  100 (244)
T 1ryp_G           22 YAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYK  100 (244)
T ss_dssp             HHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34678999999999999999999999999988887654 59999999999999999999999999998741         


Q ss_pred             ------------------------cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         161 ------------------------ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       161 ------------------------~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                              ..|+..+..+.|++.+++.|+..|+.|++              +..++.+.|+|+ 
T Consensus       101 ~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~--------------~~~~~~aiG~gs-  165 (244)
T 1ryp_G          101 TPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSY--------------WGYKGAATGKGR-  165 (244)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCE--------------EEBSEEEESTTH-
T ss_pred             CCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCE--------------EEeeEEEECCCh-
Confidence                                    01222223333787667899999999987              667899999999 


Q ss_pred             hhHHHHHHHHHhh---cccccccccCCCCCHHHHHHHHHHHHhh
Q psy9489         217 ADFQYLNDIVKQK---ILDDDLHNDGFVLKPKSLHSWLTRVLYN  257 (279)
Q Consensus       217 aD~~~l~~~l~~~---~~~~~~~ee~~~l~~~~la~~isr~lys  257 (279)
                         +++..+|++.   |+++|+.+|+.++..+++.+.+.++..+
T Consensus       166 ---~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s  206 (244)
T 1ryp_G          166 ---QSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEK  206 (244)
T ss_dssp             ---HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTS
T ss_pred             ---HHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence               9999999997   8888888888888888888777665543

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H

Probab=99.87  E-value=1.2e-22  Score=183.56  Aligned_cols=149  Identities=17%  Similarity=0.195  Sum_probs=109.1

Q ss_pred             cCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------c
Q psy9489          91 FSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------T  162 (279)
Q Consensus        91 ~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~  162 (279)
                      +++ +.+|||+|||+++||||||+|+|.+.|.++.+++++||++|++|+++++||..||+|.|.+.++...        +
T Consensus        51 a~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~  129 (291)
T 2jay_A           51 DAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGV  129 (291)
T ss_dssp             --------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             ccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCC
Confidence            444 7899999999999999999999999999999999999999999999999999999999999988511        1


Q ss_pred             ------------------------cccceeeEEEEEeCC------cEEEEEcCCCccCceeeecCCCceEEe--cccEEE
Q psy9489         163 ------------------------PLTTGTSVLGLVFNG------GVILAADSAGYYGSMMRFNDCPRIMQI--NKFTIL  210 (279)
Q Consensus       163 ------------------------pi~~g~tvlgi~~~~------gvlia~D~~gs~g~li~~~~~~kI~~i--~~~~~~  210 (279)
                                              |+..+..+.|++.++      +.|+..|+.|++              +  ..++.+
T Consensus       130 ~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~--------------~e~~~~~~a  195 (291)
T 2jay_A          130 PLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGW--------------NIEEEGYQA  195 (291)
T ss_dssp             CCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCE--------------EECSSSEEE
T ss_pred             CCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcE--------------EecCCCEEE
Confidence                                    111112333776543      689999999976              5  667999


Q ss_pred             EeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         211 GAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       211 ~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      .|+|+    +++..+|++.|+++++.+|+.++..+++..++.+++++.
T Consensus       196 iGsgs----~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg  239 (291)
T 2jay_A          196 VGSGS----LFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATG  239 (291)
T ss_dssp             ESTTH----HHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC--------
T ss_pred             EecCH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCC
Confidence            99999    999999999999999999999999999999999998764

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J

Probab=99.87  E-value=1.9e-22  Score=172.79  Aligned_cols=142  Identities=13%  Similarity=0.099  Sum_probs=123.1

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------------  161 (279)
                      ||+|||+++||||||+|+|.+.|+++.+++.+||++|++|+++++||..||++.+.+.++.+.                 
T Consensus         2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a   81 (201)
T 1iru_K            2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA   81 (201)
T ss_dssp             CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999887510                 


Q ss_pred             --------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHH
Q psy9489         162 --------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV  226 (279)
Q Consensus       162 --------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l  226 (279)
                                    .|+..+..+.|++. +++.|+..|+.|++              ...++.+.|+|+    +++..+|
T Consensus        82 ~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~--------------~~~~~~aiGsgs----~~a~~~L  143 (201)
T 1iru_K           82 NFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAAL--------------AKAPFAAHGYGA----FLTLSIL  143 (201)
T ss_dssp             HHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCE--------------EECSEEEESHHH----HHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCe--------------EECCEEEECCcH----HHHHHHH
Confidence                          02222223337775 46899999999987              667899999999    9999999


Q ss_pred             HhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       227 ~~~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      ++.|+++++++|+.++..+++.+++.|+.++.
T Consensus       144 e~~~~~~~s~eea~~l~~~al~~a~~rd~~sg  175 (201)
T 1iru_K          144 DRYYTPTISRERAVELLRKCLEELQKRFILNL  175 (201)
T ss_dssp             HHHCCTTCCHHHHHHHHHHHHHHHHHTBCBCC
T ss_pred             HhcccCCCCHHHHHHHHHHHHHHHHhhccccC
Confidence            99999999999999999999999998887764

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H

Probab=99.87  E-value=4.1e-22  Score=174.95  Aligned_cols=142  Identities=15%  Similarity=0.183  Sum_probs=124.1

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------cccc-----
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TPLT-----  165 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~pi~-----  165 (279)
                      ||+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..||+|.+.+.++.+.        ++++     
T Consensus         1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (234)
T 1iru_I            1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN   80 (234)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999998521        1111     


Q ss_pred             -------------ceeeE--EEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhc
Q psy9489         166 -------------TGTSV--LGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI  230 (279)
Q Consensus       166 -------------~g~tv--lgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~  230 (279)
                                   .+..+  .|++.+++.|+..|+.|++              ...++.+.|+|+    +.+..+|++.|
T Consensus        81 ~~l~~~l~~~~~~~~v~llvaG~D~~gp~Ly~idp~G~~--------------~~~~~~aiGsgs----~~a~~~Le~~~  142 (234)
T 1iru_I           81 RMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGST--------------DKLPYVTMGSGS----LAAMAVFEDKF  142 (234)
T ss_dssp             HHHHHHHHHTTTCSCEEEEEEEECSSCEEEEEECTTSCE--------------EECSEEEESTTH----HHHHHHHHHSC
T ss_pred             HHHHHHHHhcCCCCceeEEEEEEcCCCCEEEEECCCCCE--------------EecCEEEECCch----HHHHHHHHHhc
Confidence                         23332  3777678899999999986              667899999999    99999999999


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         231 LDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       231 ~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      +++|+++|+.++..+++...+.+++++.
T Consensus       143 ~~~ms~eeA~~la~~al~~a~~~d~~sg  170 (234)
T 1iru_I          143 RPDMEEEEAKNLVSEAIAAGIFNDLGSG  170 (234)
T ss_dssp             CTTCCHHHHHTHHHHHHHHHHHHCTTCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence            9999999999999999999999887764

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...

Probab=99.87  E-value=2.2e-22  Score=172.02  Aligned_cols=142  Identities=15%  Similarity=0.148  Sum_probs=123.8

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------------  161 (279)
                      ||+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..||+|.|.+.++...                 
T Consensus         2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   81 (198)
T 1ryp_K            2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS   81 (198)
T ss_dssp             CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999988410                 


Q ss_pred             --------------ccccceeeEEEEEe--CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHH
Q psy9489         162 --------------TPLTTGTSVLGLVF--NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI  225 (279)
Q Consensus       162 --------------~pi~~g~tvlgi~~--~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~  225 (279)
                                    .|+..+..+.|++.  +++.|+..|+.|++              ...++.+.|+|+    +++..+
T Consensus        82 ~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~--------------~~~~~~aiG~g~----~~a~~~  143 (198)
T 1ryp_K           82 SFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTK--------------VELPYGAHGYSG----FYTFSL  143 (198)
T ss_dssp             HHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCE--------------EECSEEECTTHH----HHHHHH
T ss_pred             HHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCE--------------EECCEEEEcccH----HHHHHH
Confidence                          13222233348874  57899999999987              667899999999    999999


Q ss_pred             HHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       226 l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      |++.|+++++++|+.++..+++.+.+.++.++.
T Consensus       144 Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~  176 (198)
T 1ryp_K          144 LDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDF  176 (198)
T ss_dssp             HHHHCCTTCCHHHHHHHHHHHHHHHHHHCSBCC
T ss_pred             HHhhcCCCCCHHHHHHHHHHHHHHHHHhCccCC
Confidence            999999999999999999999999998887764

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*

Probab=99.86  E-value=1.1e-22  Score=183.73  Aligned_cols=146  Identities=13%  Similarity=0.071  Sum_probs=123.1

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      ++++++++|+|+|||+++||||||+|+|.+.+.++.+ +.+||++|++|+++++||+.+|+|.|.+.++...        
T Consensus        26 YA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~  104 (288)
T 3nzj_F           26 YAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYK  104 (288)
T ss_dssp             HHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4567999999999999999999999999998877654 7799999999999999999999999999998511        


Q ss_pred             -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                               +|+..+..+.|++.+++.|+..|+.|++              ...+++++|+|+ 
T Consensus       105 ~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~--------------~~~~~~aiGsgs-  169 (288)
T 3nzj_F          105 TPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSY--------------WGYKGAATGKGR-  169 (288)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCE--------------EEBSEEEESTTH-
T ss_pred             CcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCE--------------EEcCEEEEcCcH-
Confidence                                     1322233344888778999999999987              667899999999 


Q ss_pred             hhHHHHHHHHHhh---cccccccccCCCCCHHHHHHHHHHH
Q psy9489         217 ADFQYLNDIVKQK---ILDDDLHNDGFVLKPKSLHSWLTRV  254 (279)
Q Consensus       217 aD~~~l~~~l~~~---~~~~~~~ee~~~l~~~~la~~isr~  254 (279)
                         +++..+|++.   |+++|+++|+.++..++|...+.++
T Consensus       170 ---~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~  207 (288)
T 3nzj_F          170 ---QSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDN  207 (288)
T ss_dssp             ---HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGG
T ss_pred             ---HHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcc
Confidence               9999999999   8888888888888888887776653

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...

Probab=99.86  E-value=1.6e-22  Score=179.21  Aligned_cols=145  Identities=14%  Similarity=0.130  Sum_probs=122.2

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      .+++++++|||+|||+++||||||+|+|.+ +.++.+++.+||++|++|+++++||..||+|.+.+.++...        
T Consensus        23 yA~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  101 (250)
T 1ryp_B           23 YALTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIY  101 (250)
T ss_dssp             HHHHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             hHHHHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356788999999999999999999999987 89999999999999999999999999999999998876311        


Q ss_pred             --------------------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489         162 --------------------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN  214 (279)
Q Consensus       162 --------------------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG  214 (279)
                                                +|+..+..+.|++. .++.|+..|+.|++              +..++.+.|+|
T Consensus       102 ~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~aiGsg  167 (250)
T 1ryp_B          102 GEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSY--------------FPWKATAIGKG  167 (250)
T ss_dssp             SSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCE--------------EEBSEEEESTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCE--------------EeeceeEecCc
Confidence                                      12112222337765 46899999999987              66789999999


Q ss_pred             ChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489         215 DYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR  253 (279)
Q Consensus       215 ~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr  253 (279)
                      +    +++..+|++.|+++|+.+|+.++..+++.+.+.+
T Consensus       168 s----~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~  202 (250)
T 1ryp_B          168 S----VAAKTFLEKRWNDELELEDAIHIALLTLKESVEG  202 (250)
T ss_dssp             H----HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCS
T ss_pred             c----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcc
Confidence            9    9999999999999999998888888888777664

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A

Probab=99.86  E-value=1e-21  Score=164.81  Aligned_cols=137  Identities=13%  Similarity=0.136  Sum_probs=117.8

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEe-cCceEeeecCcccccccchhhhhccc----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKI----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i-~~~~~~~~sG~~aD~~~l~~~l~~~~----------------  161 (279)
                      ||+|||+++||||||+|+|.+.|.++.+++.+||++| ++|+++++||+.||++.|.+.++.+.                
T Consensus         1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~l~~   80 (174)
T 1g3k_A            1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAK   80 (174)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            6999999999999999999999999999999999999 99999999999999999999988521                


Q ss_pred             -------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEec---ccEEEEeccChhhHHHHHHHHHhhcc
Q psy9489         162 -------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN---KFTILGAGNDYADFQYLNDIVKQKIL  231 (279)
Q Consensus       162 -------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~---~~~~~~gSG~~aD~~~l~~~l~~~~~  231 (279)
                             .+ ..+..+++.+  ++.|+..|+.|++              ..   +++.+.|||+    +++...||+.|+
T Consensus        81 ~~~~~~~~r-~~~~~l~g~d--~p~Ly~~d~~G~~--------------~~~~~~~~~a~Gsgs----~~a~~~le~~~~  139 (174)
T 1g3k_A           81 DWRTDRALR-KLEAMLIVAD--EKESLIITGIGDV--------------VQPEEDQILAIGSGG----NYALSAARALVE  139 (174)
T ss_dssp             HHHHSTTGG-GCCCEEEEEC--SSCEEEEETTTEE--------------ECCCTTCEEEESTTH----HHHHHHHHHHHH
T ss_pred             HHHhccCcC-cceEEEEEEC--CCEEEEEcCCCcE--------------EecCCCcEEEEcccH----HHHHHHHHHhcc
Confidence                   11 2455566664  7899999999987              44   3499999999    999999999999


Q ss_pred             -cccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         232 -DDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       232 -~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                       ++|+.+   ++..+++..++.|+.++..
T Consensus       140 ~~~mt~~---~l~~~al~~a~~rd~~sg~  165 (174)
T 1g3k_A          140 NTELSAH---EIVEKSLRIAGDICVFTNT  165 (174)
T ss_dssp             HCCCCHH---HHHHHHHHHHHHHCTTCCS
T ss_pred             cCCCCHH---HHHHHHHHHHHHhccccCC
Confidence             888754   6888899999998888754

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F

Probab=99.86  E-value=8.6e-23  Score=181.33  Aligned_cols=144  Identities=11%  Similarity=0.119  Sum_probs=119.3

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK---------  160 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~---------  160 (279)
                      .+++++++|+|+|||+++||||||+|+|.+.+.++ .++.+||++|++|+++++||..||+|.|.+.++..         
T Consensus        25 yA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  103 (254)
T 1iru_G           25 YAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFG  103 (254)
T ss_dssp             HHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhC
Confidence            35678999999999999999999999999988887 48999999999999999999999999999998851         


Q ss_pred             ------------------------cccccceeeEEEEE-eCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489         161 ------------------------ITPLTTGTSVLGLV-FNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND  215 (279)
Q Consensus       161 ------------------------~~pi~~g~tvlgi~-~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~  215 (279)
                                              .+|+..+..+.|++ ..++.|+..|+.|++              +..++.+.|+|+
T Consensus       104 ~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~aiGsgs  169 (254)
T 1iru_G          104 YNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVS--------------YGYWGCAIGKAR  169 (254)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCE--------------EEBSEEEESTTH
T ss_pred             CCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCE--------------EeeeeEEecCcc
Confidence                                    01222223334887 567899999999987              667899999999


Q ss_pred             hhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHH
Q psy9489         216 YADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLT  252 (279)
Q Consensus       216 ~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~is  252 (279)
                          +++..+|++.|+++|+++|+.++..++|...+.
T Consensus       170 ----~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~  202 (254)
T 1iru_G          170 ----QAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHD  202 (254)
T ss_dssp             ----HHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSC
T ss_pred             ----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence                999999999988777777777777666665543

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4

Probab=99.85  E-value=6.7e-22  Score=173.61  Aligned_cols=142  Identities=17%  Similarity=0.225  Sum_probs=122.9

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------cccc-----
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TPLT-----  165 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~pi~-----  165 (279)
                      ||+|||+++||||||+|+|.+.|+++.+++.+||++|++++++++||..||++.|.+.++...        ++++     
T Consensus         1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (235)
T 1q5q_H            1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA   80 (235)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999988511        1110     


Q ss_pred             -----------------ceee--EEEEEeC-C-----cEEEEEcCCCccCceeeecCCCceEEecc--cEEEEeccChhh
Q psy9489         166 -----------------TGTS--VLGLVFN-G-----GVILAADSAGYYGSMMRFNDCPRIMQINK--FTILGAGNDYAD  218 (279)
Q Consensus       166 -----------------~g~t--vlgi~~~-~-----gvlia~D~~gs~g~li~~~~~~kI~~i~~--~~~~~gSG~~aD  218 (279)
                                       .+..  +.|++.+ +     +.|+..|+.|++              +..  ++.+.|+|+   
T Consensus        81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~--------------~~~~~~~~aiGsgs---  143 (235)
T 1q5q_H           81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGR--------------YEERAGYHAVGSGS---  143 (235)
T ss_dssp             HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCE--------------EECCSSEEEESTTH---
T ss_pred             HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCce--------------EEeCCCeEEECCCH---
Confidence                             1332  2377655 4     689999999976              555  899999999   


Q ss_pred             HHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         219 FQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       219 ~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                       +++..+|++.|+++|+++|+.++..+++...+.++.++.
T Consensus       144 -~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg  182 (235)
T 1q5q_H          144 -LFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATG  182 (235)
T ss_dssp             -HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred             -HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhCcccC
Confidence             999999999999999999999999999999999988864

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*

Probab=99.85  E-value=1.2e-22  Score=179.69  Aligned_cols=144  Identities=11%  Similarity=0.121  Sum_probs=120.9

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      ++++++++|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|++|+++++||..||+|.|.+.++...        
T Consensus        21 YA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   99 (248)
T 1iru_D           21 YAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVE   99 (248)
T ss_dssp             HHHHHHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHC
Confidence            45678999999999999999999999998877 678899999999999999999999999999999988511        


Q ss_pred             -------------------------ccccceeeEEEEE-eCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489         162 -------------------------TPLTTGTSVLGLV-FNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND  215 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~-~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~  215 (279)
                                               +|+..+..+.|++ ..++.|+..|+.|++              +..++.+.|+|+
T Consensus       100 ~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~--------------~~~~~~aiG~gs  165 (248)
T 1iru_D          100 DPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTY--------------HAWKANAIGRGA  165 (248)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCE--------------EEBSEEEESTTH
T ss_pred             CCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcE--------------EEeeEEEECCCc
Confidence                                     1322223334787 567899999999987              667899999999


Q ss_pred             hhhHHHHHHHHHhhccccc--ccccCCCCCHHHHHHHHH
Q psy9489         216 YADFQYLNDIVKQKILDDD--LHNDGFVLKPKSLHSWLT  252 (279)
Q Consensus       216 ~aD~~~l~~~l~~~~~~~~--~~ee~~~l~~~~la~~is  252 (279)
                          +++..+|++.|+++|  +++|+.++..++|...+.
T Consensus       166 ----~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~  200 (248)
T 1iru_D          166 ----KSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ  200 (248)
T ss_dssp             ----HHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC
T ss_pred             ----HHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc
Confidence                999999999999888  888777777777766554

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N

Probab=99.85  E-value=9e-22  Score=168.31  Aligned_cols=141  Identities=16%  Similarity=0.215  Sum_probs=117.8

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------------  161 (279)
                      ||+|||+++||||||+|+|.+.|+++.+++.+||++|++|+++++||..||+|.|.+.++.+.                 
T Consensus         1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a   80 (199)
T 3unf_N            1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA   80 (199)
T ss_dssp             CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred             CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            799999999999999999999999999999999999999999999999999999999988511                 


Q ss_pred             -----------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhh
Q psy9489         162 -----------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK  229 (279)
Q Consensus       162 -----------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~  229 (279)
                                 .|+..+..+.|++. .++.|+.  +.|++             .....+++.|+|+    +++..+|++.
T Consensus        81 ~~l~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~--p~G~~-------------~~~~~~~~~Gsgs----~~a~~~Le~~  141 (199)
T 3unf_N           81 NVVKNISYKYREDLLAHLIVAGWDQREGGQVYG--TMGGM-------------LIRQPFTIGGSGS----SYIYGYVDAA  141 (199)
T ss_dssp             HHHHHHHHHTTTTCCCCEEEEEEETTTEEEEEE--CGGGC-------------CEECSEEEEEGGG----GGGHHHHHHH
T ss_pred             HHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEE--ECCCc-------------eecCCEEEEccCH----HHHHHHHHhh
Confidence                       12222233337765 3456666  66654             1345678889999    9999999999


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       230 ~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      |+++|+++|+.++..+++...+.++.++.
T Consensus       142 ~~~~ms~eea~~la~~al~~~~~~d~~sg  170 (199)
T 3unf_N          142 YKPGMTPEECRRFTTNAITLAMNRDGSSG  170 (199)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            99999999999999999999999988764

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...

Probab=99.85  E-value=1.8e-22  Score=176.94  Aligned_cols=141  Identities=13%  Similarity=0.126  Sum_probs=113.0

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      .+++++++|||+|||+++||||||+|+|.+.+..   ++.+||++|++|+++++||..||+|.|.+.++...        
T Consensus        23 yA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   99 (233)
T 1ryp_F           23 YALEAIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFN   99 (233)
T ss_dssp             HHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHC
Confidence            4567889999999999999999999999887732   58899999999999999999999999999988510        


Q ss_pred             -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                               +|+..+..+.|++.+++.|+..|+.|++              +..++.+.|+|+ 
T Consensus       100 ~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~--------------~~~~~~aiG~gs-  164 (233)
T 1ryp_F          100 RKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNV--------------TELYGTAIGARS-  164 (233)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCE--------------EEESEEEESTTH-
T ss_pred             CCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCe--------------eeeeEEEECCCc-
Confidence                                     1222223334887778999999999987              666899999999 


Q ss_pred             hhHHHHHHHHHhhccc--cc--ccccCCCCCHHHHHHHH
Q psy9489         217 ADFQYLNDIVKQKILD--DD--LHNDGFVLKPKSLHSWL  251 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~--~~--~~ee~~~l~~~~la~~i  251 (279)
                         +++..+|++.|++  +|  +++|+.++..+++.+.+
T Consensus       165 ---~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~  200 (233)
T 1ryp_F          165 ---QGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL  200 (233)
T ss_dssp             ---HHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC
T ss_pred             ---HHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh
Confidence               9999999999997  66  66655555544444443

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4

Probab=99.85  E-value=2e-21  Score=162.57  Aligned_cols=136  Identities=16%  Similarity=0.155  Sum_probs=116.8

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEe-cCceEeeecCcccccccchhhhhcccc---------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKIT---------------  162 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i-~~~~~~~~sG~~aD~~~l~~~l~~~~~---------------  162 (279)
                      ||+|||+++||||||+|+|.+.|.++.+++.+||++| ++|+++++||..||+|.|.+.++.+.+               
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~l~~   80 (171)
T 1m4y_A            1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAK   80 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            6999999999999999999999999999999999999 999999999999999999999986221               


Q ss_pred             --------cccceeeEE-EEEeCCcEEEEEcCCCccCceeeecCCCceEEeccc--EEEEeccChhhHHHHHHHHHhhcc
Q psy9489         163 --------PLTTGTSVL-GLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKF--TILGAGNDYADFQYLNDIVKQKIL  231 (279)
Q Consensus       163 --------pi~~g~tvl-gi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~--~~~~gSG~~aD~~~l~~~l~~~~~  231 (279)
                              | ..+..+| |   +++.|+..|+.|++              +..+  +.+.|+|+    +++..+||+.|+
T Consensus        81 ~~~~~~~~~-~~~~~~lv~---D~p~Ly~~d~~G~~--------------~~~~~~~~a~Gsgs----~~a~~~le~~~~  138 (171)
T 1m4y_A           81 DWRTDRVLR-RLEALLLVA---DKENIFIISGNGEV--------------IQPDDDAAAIGSGG----PYALAAAKALLR  138 (171)
T ss_dssp             HHHHCTTGG-GCCCEEEEE---CSSCEEEECTTSCE--------------ECCSSSEEEESTTH----HHHHHHHHHHHH
T ss_pred             HHHHhCCCC-ceEEEEEEE---cCCEEEEECCCCCE--------------EecCCCEEEECCcH----HHHHHHHHHhcc
Confidence                    1 1344444 5   48899999999987              5544  99999999    999999999999


Q ss_pred             -cccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         232 -DDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       232 -~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                       ++|+.   .++..+++..++.|+.++..
T Consensus       139 ~~~ms~---~~l~~~al~~a~~rd~~sg~  164 (171)
T 1m4y_A          139 NTDLSA---REIVEKAMTIAGEICIYTNQ  164 (171)
T ss_dssp             HCCCCH---HHHHHHHHHHHHHHCTTCCS
T ss_pred             cCCCCH---HHHHHHHHHHHHHhCcccCC
Confidence             78876   56888889999988888753

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E

Probab=99.85  E-value=2.7e-22  Score=179.06  Aligned_cols=144  Identities=14%  Similarity=0.132  Sum_probs=117.9

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      .+++++++|+|+|||+++||||||+|+|.+.+.   .++.+||++|++|+++++||..||+|.|.+.++...        
T Consensus        24 YA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  100 (263)
T 1iru_F           24 YAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFD  100 (263)
T ss_dssp             HHHHHHHHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            346688899999999999999999999988774   258899999999999999999999999999988511        


Q ss_pred             -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                               +|+..+..+.|++.+++.|+..|+.|++              +..++.+.|+|+ 
T Consensus       101 ~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~--------------~~~~~~aiGsgs-  165 (263)
T 1iru_F          101 RPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANY--------------FDCRAMSIGARS-  165 (263)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCE--------------EEESEEEESTTH-
T ss_pred             CCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCE--------------EEeeEEEcCccc-
Confidence                                     1322223334887677899999999987              666899999999 


Q ss_pred             hhHHHHHHHHHhhccc--ccccccCCCCCHHHHHHHHHHH
Q psy9489         217 ADFQYLNDIVKQKILD--DDLHNDGFVLKPKSLHSWLTRV  254 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~--~~~~ee~~~l~~~~la~~isr~  254 (279)
                         +++..+|++.|++  +++++|+.++..++|.+.+.++
T Consensus       166 ---~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd  202 (263)
T 1iru_F          166 ---QSARTYLERHMSEFMECNLNELVKHGLRALRETLPAE  202 (263)
T ss_dssp             ---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTT
T ss_pred             ---HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhcc
Confidence               9999999999997  7777777777777776666554

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A

Probab=99.84  E-value=3.1e-22  Score=178.29  Aligned_cols=147  Identities=14%  Similarity=0.150  Sum_probs=117.4

Q ss_pred             CCCCCcc-c-cCCCcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhh
Q psy9489          79 NVLPHYF-R-RSGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI  156 (279)
Q Consensus        79 ~~~~~~~-~-~~~~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~  156 (279)
                      +.+|.++ . ....+++++++|+|+|||+++||||||+|+|        +++.+||++|++|+++++||..||+|.|.+.
T Consensus         6 ~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~   77 (259)
T 1q5q_A            6 YASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRA   77 (259)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHH
Confidence            4455554 1 2345678999999999999999999999999        4789999999999999999999999999996


Q ss_pred             hhcc--------c-------------------------ccccceeeEEEEE----eCCcEEEEEcCCCccCceeeecCCC
Q psy9489         157 VKQK--------I-------------------------TPLTTGTSVLGLV----FNGGVILAADSAGYYGSMMRFNDCP  199 (279)
Q Consensus       157 l~~~--------~-------------------------~pi~~g~tvlgi~----~~~gvlia~D~~gs~g~li~~~~~~  199 (279)
                      ++..        .                         +|+..+..+.|++    ..++.|+..|+.|++          
T Consensus        78 ~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~----------  147 (259)
T 1q5q_A           78 GIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSI----------  147 (259)
T ss_dssp             HHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCE----------
T ss_pred             HHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCce----------
Confidence            5530        0                         1211222333887    567899999999987          


Q ss_pred             ceEEe-cccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHH
Q psy9489         200 RIMQI-NKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWL  251 (279)
Q Consensus       200 kI~~i-~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~i  251 (279)
                          . ..++.+.|+|+    +.+..+|++.|+++|+++|+.++..++|.+.+
T Consensus       148 ----~~~~~~~aiG~gs----~~a~~~Le~~~~~~ms~eea~~la~~al~~~~  192 (259)
T 1q5q_A          148 ----VDEQHFVVMGGTT----EPIATAMRESYRADLDLEAAVGIAVNALRQGG  192 (259)
T ss_dssp             ----EEESSEEEESSSH----HHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC
T ss_pred             ----eeCCCEEEECCCh----HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHh
Confidence                5 56799999999    99999999999998888888888888888777

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D

Probab=99.84  E-value=1e-21  Score=173.72  Aligned_cols=138  Identities=14%  Similarity=0.183  Sum_probs=115.9

Q ss_pred             CCCcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc-------
Q psy9489          88 SGSFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK-------  160 (279)
Q Consensus        88 ~~~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~-------  160 (279)
                      ...+++++++|+|+|||+++||||||+|+|        +++++||++|++|++++++|+.+|++.|.+.++.+       
T Consensus        17 ~EYA~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~   88 (248)
T 3mi0_A           17 SELARKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYA   88 (248)
T ss_dssp             HHHHHHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHh
Confidence            345678999999999999999999999999        46899999999999999999999999997766531       


Q ss_pred             -c-ccc------------------------cceeeEEEEEe----CCcEEEEEcCCCccCceeeecCCCceEEec-ccEE
Q psy9489         161 -I-TPL------------------------TTGTSVLGLVF----NGGVILAADSAGYYGSMMRFNDCPRIMQIN-KFTI  209 (279)
Q Consensus       161 -~-~pi------------------------~~g~tvlgi~~----~~gvlia~D~~gs~g~li~~~~~~kI~~i~-~~~~  209 (279)
                       . .++                        ..+..+.|++.    +++.|+.+|+.|++              .. .++.
T Consensus        89 ~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~--------------~~e~~~~  154 (248)
T 3mi0_A           89 YDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSI--------------ADEPHFV  154 (248)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCE--------------EEESSEE
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEE--------------eecccEE
Confidence             1 121                        11223338876    67999999999987              64 7899


Q ss_pred             EEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHH
Q psy9489         210 LGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWL  251 (279)
Q Consensus       210 ~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~i  251 (279)
                      +.|+|+    +.+..+|+++|+++|+++|+.++..++|.+.+
T Consensus       155 a~Gsgs----~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~  192 (248)
T 3mi0_A          155 VMGGTT----EPIANALKESYAENASLTDALRIAVAALRAGS  192 (248)
T ss_dssp             EESSCH----HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-
T ss_pred             EECccH----HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence            999999    99999999999999999999999999998888

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M

Probab=99.82  E-value=4e-20  Score=160.43  Aligned_cols=118  Identities=49%  Similarity=0.955  Sum_probs=110.5

Q ss_pred             cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc-ccC
Q psy9489         161 ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH-NDG  239 (279)
Q Consensus       161 ~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~-ee~  239 (279)
                      .+++..|+++||++++|||++++|++.+.|.++.+++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++ +++
T Consensus         2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~   80 (219)
T 1iru_N            2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVI-DEELLGDG   80 (219)
T ss_dssp             CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHH-HHHHHCSS
T ss_pred             CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHH-HHHHHHcC
Confidence            36788999999999999999999999999999999999999999999999999999999999999999998 6766 888


Q ss_pred             CCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         240 FVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       240 ~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      .+++++.+++.+++.+|++|..++||++++||||||+++|
T Consensus        81 ~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~gp  120 (219)
T 1iru_N           81 HSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES  120 (219)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEE
T ss_pred             CCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECCCC
Confidence            9999999999999999998878899999999999997655

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...

Probab=99.81  E-value=1.1e-19  Score=159.09  Aligned_cols=118  Identities=35%  Similarity=0.707  Sum_probs=110.5

Q ss_pred             cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc----
Q psy9489         161 ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH----  236 (279)
Q Consensus       161 ~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~----  236 (279)
                      .+|+..|+++||++++|||++++|++.++|.++.+++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++    
T Consensus         2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~   80 (233)
T 1ryp_N            2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVT-ENAYDNPL   80 (233)
T ss_dssp             CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHH-HHHTTCTT
T ss_pred             cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHH-HHhhccch
Confidence            36788999999999999999999999999999999999999999999999999999999999999999988 6777    


Q ss_pred             -ccCCCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCC-CC
Q psy9489         237 -NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG-EP  279 (279)
Q Consensus       237 -ee~~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~-~p  279 (279)
                       +++.+++++.+++.+++.+|++|.+++||++++||||||++ +|
T Consensus        81 ~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp  125 (233)
T 1ryp_N           81 ADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQ  125 (233)
T ss_dssp             TTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCE
T ss_pred             hhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCE
Confidence             78899999999999999999988888999999999999974 55

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...

Probab=99.81  E-value=8e-20  Score=161.04  Aligned_cols=122  Identities=11%  Similarity=0.082  Sum_probs=113.1

Q ss_pred             hhhcccccccc-eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccc
Q psy9489         156 IVKQKITPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDD  234 (279)
Q Consensus       156 ~l~~~~~pi~~-g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~  234 (279)
                      .+++.++++.. |+++||++++||||+++|++.+ ++++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+
T Consensus        18 QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~-~~   95 (243)
T 1ryp_A           18 QVEYAFKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAA-EF   95 (243)
T ss_dssp             HHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHH-HH
Confidence            34566788889 9999999999999999999988 899999999999999999999999999999999999999998 77


Q ss_pred             ccccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeC-CCC
Q psy9489         235 LHNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       235 ~~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      +++++.+++++.+++.+++.+  |++|+.++||+|++||||||+ +||
T Consensus        96 ~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp  143 (243)
T 1ryp_A           96 RYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGP  143 (243)
T ss_dssp             HHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEE
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCc
Confidence            888999999999999999999  898888999999999999996 555

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*

Probab=99.80  E-value=2.3e-19  Score=160.25  Aligned_cols=121  Identities=34%  Similarity=0.687  Sum_probs=111.6

Q ss_pred             hcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc-
Q psy9489         158 KQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH-  236 (279)
Q Consensus       158 ~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~-  236 (279)
                      ++..+|+..|+++|||+++||||+++|++.+.|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++ 
T Consensus        32 ~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~-~~~~~  110 (266)
T 1g0u_M           32 VNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVT-ENAYD  110 (266)
T ss_dssp             --CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHH-HHHTT
T ss_pred             hhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHH-Hhhhc
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999988 6776 


Q ss_pred             ----ccCCCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCC-CC
Q psy9489         237 ----NDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG-EP  279 (279)
Q Consensus       237 ----ee~~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~-~p  279 (279)
                          +++.+++++.+++.+++.+|++|.+++||+|++||||||++ +|
T Consensus       111 ~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp  158 (266)
T 1g0u_M          111 NPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQ  158 (266)
T ss_dssp             CTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCE
T ss_pred             cchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCE
Confidence                78899999999999999999988778999999999999974 54

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A

Probab=99.79  E-value=2.3e-19  Score=157.15  Aligned_cols=122  Identities=15%  Similarity=0.231  Sum_probs=111.8

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++..+++..|+++||++++|||++++|++.+ ++++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus        20 QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~   97 (233)
T 1iru_B           20 QIEYALAAVAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQ-QYY   97 (233)
T ss_dssp             HHHHHHHHHHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred             hhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHH-HHH
Confidence            345667888999999999999999999999987 688899999999999999999999999999999999999998 778


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++++.+++++.+++++++.+  |+++.+++||+|++||||||++||
T Consensus        98 ~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp  143 (233)
T 1iru_B           98 LVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRP  143 (233)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSE
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCC
Confidence            88889999999999999999  677777899999999999997665

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H

Probab=99.78  E-value=7.6e-19  Score=152.30  Aligned_cols=113  Identities=19%  Similarity=0.315  Sum_probs=103.0

Q ss_pred             cccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCC
Q psy9489         163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVL  242 (279)
Q Consensus       163 pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l  242 (279)
                      ++..|+++||++++|||++++|++.++|+++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.++
T Consensus         4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~   82 (217)
T 1yar_H            4 TLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELE-LYRLQRRVNM   82 (217)
T ss_dssp             -----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHSSCC
T ss_pred             CCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHH-HHHHHHCCCC
Confidence            456899999999999999999999999999999999999999999999999999999999999999998 7788889999


Q ss_pred             CHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         243 KPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       243 ~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      +++.+++.+++.+|.+|  ++||++++|||||| +||
T Consensus        83 ~v~~la~~l~~~~~~~r--~rp~~v~~lvaG~D-~gp  116 (217)
T 1yar_H           83 PIEAVATLLSNMLNQVK--YMPYMVQLLVGGID-TAP  116 (217)
T ss_dssp             CHHHHHHHHHHHHHHTT--TSCCCEEEEEEEES-SSE
T ss_pred             CHHHHHHHHHHHHHhcC--CCCceEEEEEEEEC-CCC
Confidence            99999999999999977  78999999999999 665

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L

Probab=99.78  E-value=1.2e-18  Score=150.40  Aligned_cols=114  Identities=20%  Similarity=0.393  Sum_probs=105.8

Q ss_pred             cccc-ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCC
Q psy9489         162 TPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGF  240 (279)
Q Consensus       162 ~pi~-~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~  240 (279)
                      .|+. .|+++||++++|||++++|++.+.+.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+.++++.
T Consensus         3 ~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~   81 (213)
T 1iru_M            3 SPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLK-MYKHSNNK   81 (213)
T ss_dssp             CSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHSS
T ss_pred             CCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHH-HHHHhcCC
Confidence            4543 799999999999999999999999988888999999999999999999999999999999999988 77888889


Q ss_pred             CCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCC
Q psy9489         241 VLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE  278 (279)
Q Consensus       241 ~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~  278 (279)
                      +++++.+++.+++.+|++|  ++||++++||||||+++
T Consensus        82 ~~~v~~la~~l~~~~y~~r--~~P~~v~~lvaG~D~~g  117 (213)
T 1iru_M           82 AMTTGAIAAMLSTILYSRR--FFPYYVYNIIGGLDEEG  117 (213)
T ss_dssp             CCCHHHHHHHHHHHHHHTT--TSCCCEEEEEEEECTTS
T ss_pred             CCCHHHHHHHHHHHHHhhC--CCCceEEEEEEEEcCCC
Confidence            9999999999999999988  78999999999999643

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=99.78  E-value=4.1e-19  Score=158.49  Aligned_cols=122  Identities=19%  Similarity=0.266  Sum_probs=111.1

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++.++++..|+++|||++++|||+++|++.+.+ ++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+.
T Consensus        27 QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~-~y~  104 (264)
T 3h4p_A           27 QVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQ-IYR  104 (264)
T ss_dssp             HHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHH-HHH
T ss_pred             HHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHH-hhH
Confidence            35667789999999999999999999999998874 7888999999999999999999999999999999999987 678


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      +.++.+++++.+++.+++.+  |+++++++||+|++||||||++||
T Consensus       105 ~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp  150 (264)
T 3h4p_A          105 LTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEA  150 (264)
T ss_dssp             HTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEE
T ss_pred             HhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcC
Confidence            88899999999999999988  566667899999999999998665

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...

Probab=99.77  E-value=7.9e-19  Score=154.71  Aligned_cols=123  Identities=14%  Similarity=0.189  Sum_probs=110.9

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++.++++..|+++||++++|||++++|++.+.+.+...++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus        20 QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~   98 (244)
T 1ryp_C           20 QVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQ-NYL   98 (244)
T ss_dssp             HHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHH-HHH
Confidence            3456678889999999999999999999999998766668899999999999999999999999999999999998 778


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEe-CCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQ-NGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D-~~~p  279 (279)
                      ++++.+++++.+++.+++.+  |+++.+++||+|++|||||| +++|
T Consensus        99 ~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp  145 (244)
T 1ryp_C           99 KTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGY  145 (244)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEE
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCC
Confidence            88899999999999999999  55666688999999999999 5554

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A

Probab=99.77  E-value=1.1e-18  Score=152.82  Aligned_cols=122  Identities=18%  Similarity=0.263  Sum_probs=110.2

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++..+++..|+++||++++|||++++|++.+.+ ++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus        23 QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~  100 (233)
T 1yar_A           23 QVEYAREAVKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQ-QEK  100 (233)
T ss_dssp             HHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHH-HHH
Confidence            34566788999999999999999999999999884 7788899999999999999999999999999999999988 678


Q ss_pred             cccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeCCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++++.+++++.+++.+++.++  +++...+||++++||||||+++|
T Consensus       101 ~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp  146 (233)
T 1yar_A          101 VTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGP  146 (233)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCE
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCC
Confidence            888999999999999999997  45556789999999999998665

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...

Probab=99.77  E-value=1.2e-18  Score=153.31  Aligned_cols=123  Identities=15%  Similarity=0.179  Sum_probs=111.0

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++.++++..|+++||++++|||++++|++.+.+.+...++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus        17 QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~   95 (241)
T 1ryp_D           17 QVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQ-SHR   95 (241)
T ss_dssp             HHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHH-HHH
Confidence            3456678888999999999999999999999999877777799999999999999999999999999999999998 778


Q ss_pred             cccCCCCCHHHHHHHHHHHHhh--ccCCCCccceEEEEEEEeC--CCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVLYN--RRSQFDPLWINAFVAGMQN--GEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~lys--~r~~~~P~~vs~ii~G~D~--~~p  279 (279)
                      ++++.+++++.+++.+++.++.  ++++++||+|++||||||+  ++|
T Consensus        96 ~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp  143 (241)
T 1ryp_D           96 LTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEP  143 (241)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSC
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCe
Confidence            8889999999999999999975  4456789999999999997  666

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G

Probab=99.77  E-value=8.3e-19  Score=154.81  Aligned_cols=121  Identities=10%  Similarity=0.143  Sum_probs=110.8

Q ss_pred             hhcccccccc-eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         157 VKQKITPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       157 l~~~~~pi~~-g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      +++..+++.. |+++||++++|||++++|++.+ +.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus        25 vEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~  102 (246)
T 1iru_A           25 VEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAA-NWK  102 (246)
T ss_dssp             HHHHHHHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHH-HHH
Confidence            4566788888 9999999999999999999987 688999999999999999999999999999999999999998 778


Q ss_pred             cccCCCCCHHHHHHHHHHH--HhhccCCCCccceEEEEEEEeC-CCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRV--LYNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~--lys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      ++++.+++++.+++.+++.  +|++|.+++||+|++||||||+ ++|
T Consensus       103 ~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp  149 (246)
T 1iru_A          103 YKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGP  149 (246)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEE
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCe
Confidence            8899999999999999988  4887777899999999999996 554

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...

Probab=99.77  E-value=2.1e-18  Score=150.03  Aligned_cols=111  Identities=19%  Similarity=0.264  Sum_probs=104.5

Q ss_pred             cceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccC-CCCC
Q psy9489         165 TTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDG-FVLK  243 (279)
Q Consensus       165 ~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~-~~l~  243 (279)
                      ..|+++|||+++|+|++++|++.+.|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++ .+++
T Consensus         7 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~~   85 (222)
T 1ryp_M            7 DNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVK-WYHFDHNDKKLS   85 (222)
T ss_dssp             CCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHH-HHHHHTTTCCCC
T ss_pred             cCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHH-HHHHHcCCCCCC
Confidence            3799999999999999999999999988899999999999999999999999999999999999998 7788888 9999


Q ss_pred             HHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCC
Q psy9489         244 PKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE  278 (279)
Q Consensus       244 ~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~  278 (279)
                      ++.+++.+++.+|++|  ++||++++||||||+++
T Consensus        86 v~~la~~l~~~ly~~r--~~P~~v~~ivaG~D~~g  118 (222)
T 1ryp_M           86 INSAARNIQHLLYGKR--FFPYYVHTIIAGLDEDG  118 (222)
T ss_dssp             HHHHHHHHHHHHHTTT--TSCCCEEEEEEEECTTS
T ss_pred             HHHHHHHHHHHHHhcC--CCCceEEEEEEEEcCCC
Confidence            9999999999999987  78999999999999643

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...

Probab=99.77  E-value=7.6e-19  Score=155.00  Aligned_cols=122  Identities=11%  Similarity=0.105  Sum_probs=109.4

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++..+++..|+++||++++|||++++|++.+.+.++.. +.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus        19 QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~-~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~   96 (244)
T 1ryp_G           19 QVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAA-SFK   96 (244)
T ss_dssp             HHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTT-TSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCcccc-ccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHH-HHH
Confidence            3456678899999999999999999999999988776644 45999999999999999999999999999999998 778


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++++.+++++.+++.+++.+  |+++++++||++++||||||++||
T Consensus        97 ~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp  142 (244)
T 1ryp_G           97 KLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGA  142 (244)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEE
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcC
Confidence            88899999999999999998  666777899999999999997665

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4

Probab=99.77  E-value=1.9e-18  Score=148.03  Aligned_cols=109  Identities=18%  Similarity=0.300  Sum_probs=102.8

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +++||++++|||++++|++.+.|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus         1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~~~~~   79 (202)
T 1j2q_H            1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEAN-LYEIRRERKPTVRAI   79 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHSSCCCHHHH
T ss_pred             CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999999998 778888999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++.+++.+|.+|  ++||++++||||||++||
T Consensus        80 a~~l~~~~~~~r--~rp~~~~~lvaG~D~~gp  109 (202)
T 1j2q_H           80 ATLTSNLLNSYR--YFPYLVQLLIGGIDSEGK  109 (202)
T ss_dssp             HHHHHHHHHHTT--TSCCCEEEEEEEEETTEE
T ss_pred             HHHHHHHHHhhC--CCCceEEEEEEEEeCCCC
Confidence            999999999977  789999999999997655

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F

Probab=99.77  E-value=1.1e-18  Score=154.95  Aligned_cols=121  Identities=14%  Similarity=0.203  Sum_probs=109.7

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH  236 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~  236 (279)
                      +++..+++..|+++||+++++||++++|++.+.+.++ .++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++
T Consensus        23 vEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~  100 (254)
T 1iru_G           23 VEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEAS-NFRS  100 (254)
T ss_dssp             HHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHH-HHHH
Confidence            4567788999999999999999999999999987776 4789999999999999999999999999999999998 7788


Q ss_pred             ccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEe-CCCC
Q psy9489         237 NDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQ-NGEP  279 (279)
Q Consensus       237 ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D-~~~p  279 (279)
                      .++.+++++.+++.+++.++  ++|++++||+|++|||||| +++|
T Consensus       101 ~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp  146 (254)
T 1iru_G          101 NFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGA  146 (254)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEE
T ss_pred             HhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCc
Confidence            89999999999999999994  5566689999999999999 5554

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D

Probab=99.76  E-value=1.2e-18  Score=153.38  Aligned_cols=122  Identities=16%  Similarity=0.206  Sum_probs=110.3

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++..+++..|+++||++++|||++++|++.+.+... .++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus        23 QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~  100 (241)
T 1iru_E           23 QVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQ-NHW  100 (241)
T ss_dssp             HHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHH-HHH
Confidence            34567788899999999999999999999999988766 8899999999999999999999999999999999998 778


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCC-----CCccceEEEEEEEeCCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQ-----FDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~-----~~P~~vs~ii~G~D~~~p  279 (279)
                      ++++.+++++.+++.+++.+  |+++..     .+||++++||||||+++|
T Consensus       101 ~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp  151 (241)
T 1iru_E          101 FTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGP  151 (241)
T ss_dssp             HHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEE
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCC
Confidence            88899999999999999988  666655     789999999999996655

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*

Probab=99.76  E-value=1.3e-18  Score=153.75  Aligned_cols=122  Identities=12%  Similarity=0.189  Sum_probs=110.3

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++.++++..|+++||++++|||++++|++.+.+ ++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus        18 QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~   95 (248)
T 1iru_D           18 QVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQ-SHR   95 (248)
T ss_dssp             HHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHH-HHH
Confidence            34667788999999999999999999999999886 6778899999999999999999999999999999999998 778


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEe-CCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQ-NGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D-~~~p  279 (279)
                      +.++.+++++.+++.+++.+  |+++...|||+|++|||||| +++|
T Consensus        96 ~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp  142 (248)
T 1iru_D           96 LTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTP  142 (248)
T ss_dssp             HHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCE
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCc
Confidence            88999999999999999999  45555678999999999999 5555

>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=99.76  E-value=2.1e-18  Score=149.75  Aligned_cols=110  Identities=17%  Similarity=0.291  Sum_probs=103.0

Q ss_pred             eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHH
Q psy9489         167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKS  246 (279)
Q Consensus       167 g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~  246 (279)
                      |+++||++++|||++++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.
T Consensus         1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~   79 (219)
T 3h4p_a            1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAK-LYKMRTGRNIPPLA   79 (219)
T ss_dssp             -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHH-HHHHHTSSCCCHHH
T ss_pred             CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHH-HHHHHcCCCCCHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999998 78888999999999


Q ss_pred             HHHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489         247 LHSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       247 la~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      +++.+++.+|.+|  ++||+|++||||||+ ++|
T Consensus        80 la~~l~~~~~~~~--~~P~~v~~lvaG~D~~~gp  111 (219)
T 3h4p_a           80 CATLLSNILHSSR--MFPFLTQIIIGGYDLLEGA  111 (219)
T ss_dssp             HHHHHHHHHHHTT--TTTCCCCCEEEEEETTTEE
T ss_pred             HHHHHHHHHHHhc--CCCceEEEEEEEEeCCCCc
Confidence            9999999999876  789999999999997 554

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*

Probab=99.76  E-value=1.3e-18  Score=156.94  Aligned_cols=121  Identities=12%  Similarity=0.121  Sum_probs=109.5

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH  236 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~  236 (279)
                      +++.++++..|+++|||++++|||+++|++.+.+.++. .+.+||++++++++++.+|..+|++.+.+.++.+++ .+++
T Consensus        24 vEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~-~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~-~y~~  101 (288)
T 3nzj_F           24 VEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAA-SFKK  101 (288)
T ss_dssp             HHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCT-TCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccc-cccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHH-HHHH
Confidence            56678899999999999999999999999998876654 478999999999999999999999999999999998 7888


Q ss_pred             ccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489         237 NDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       237 ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      .++.+++++.+++.+++.+  |+++++++||+|++||||||++||
T Consensus       102 ~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp  146 (288)
T 3nzj_F          102 LYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGA  146 (288)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEE
T ss_pred             HcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCC
Confidence            8899999999999999998  455667899999999999998665

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*

Probab=99.76  E-value=2.8e-18  Score=151.41  Aligned_cols=121  Identities=18%  Similarity=0.237  Sum_probs=109.6

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++..+++..|+++||++++|||++++|++.+.+ ++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus        23 QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~  100 (246)
T 1j2p_A           23 QVEYAREAVKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQ-INR  100 (246)
T ss_dssp             HHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHH-HHH
Confidence            34566788899999999999999999999998874 6668899999999999999999999999999999999988 778


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      +.++.+++++.+++.+++.+  |+++.+.+||++++|||||| ++|
T Consensus       101 ~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp  145 (246)
T 1j2p_A          101 LTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVP  145 (246)
T ss_dssp             HHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSE
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCC
Confidence            88889999999999999999  67776788999999999999 665

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...

Probab=99.75  E-value=3.4e-18  Score=149.67  Aligned_cols=119  Identities=13%  Similarity=0.094  Sum_probs=106.7

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH  236 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~  236 (279)
                      +++.++++..|+++||++++|||++++|++.+.+ +.  ++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++
T Consensus        21 vEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~--~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~   96 (233)
T 1ryp_F           21 VEYALEAIKQGSVTVGLRSNTHAVLVALKRNADE-LS--SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCN-YSSL   96 (233)
T ss_dssp             HHHHHHHHHTSCCEEEEECSSEEEEEEECCCSST-TB--CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccc-cc--cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHH-HHHH
Confidence            4566778889999999999999999999998876 32  478999999999999999999999999999999998 7788


Q ss_pred             ccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCCCC
Q psy9489         237 NDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       237 ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      +++.+++++.+++.+++.+  |+++.+.|||+|++||||||++||
T Consensus        97 ~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp  141 (233)
T 1ryp_F           97 VFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGA  141 (233)
T ss_dssp             HHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEE
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcC
Confidence            8999999999999999999  565566789999999999997655

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B

Probab=99.75  E-value=3.5e-18  Score=152.14  Aligned_cols=123  Identities=15%  Similarity=0.100  Sum_probs=110.8

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++.++++..|+++|||+++|||++++|++.+.+.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+.
T Consensus        20 QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~   98 (261)
T 1iru_C           20 QVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQ-RYL   98 (261)
T ss_dssp             HHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHH-HHH
Confidence            3466778899999999999999999999999999888877789999999999999999999999999999999998 778


Q ss_pred             cccCCCCCHHHHHHHHHHHHhh--ccCCCCccceEEEEEEEeC-CCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVLYN--RRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~lys--~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      +.++.+++++.+++.+++.++.  ++.+++||+|++||||||+ ++|
T Consensus        99 ~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp  145 (261)
T 1iru_C           99 LQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF  145 (261)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEE
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCc
Confidence            8889999999999999999964  3445789999999999995 454

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N

Probab=99.74  E-value=7.5e-18  Score=143.85  Aligned_cols=108  Identities=17%  Similarity=0.184  Sum_probs=101.0

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +|+||++++|||++++|++.+++.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus         1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~~   79 (199)
T 3unf_N            1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLE-LHGLELEEPPLVLAA   79 (199)
T ss_dssp             CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHH-HHHHHTTSCCCHHHH
T ss_pred             CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHH
Confidence            5789999999999999999999989999999999999999999999999999999999999998 788888999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      ++.+++.+|.+|   +||++++||||||+ ++|
T Consensus        80 a~~l~~~l~~~~---~p~~v~~lvaG~D~~~~p  109 (199)
T 3unf_N           80 ANVVKNISYKYR---EDLLAHLIVAGWDQREGG  109 (199)
T ss_dssp             HHHHHHHHHHTT---TTCCCCEEEEEEETTTEE
T ss_pred             HHHHHHHHHhcC---CCceEEEEEEEEeCCCCc
Confidence            999999999876   59999999999997 444

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I

Probab=99.74  E-value=6.4e-18  Score=145.01  Aligned_cols=111  Identities=23%  Similarity=0.328  Sum_probs=103.7

Q ss_pred             ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHH
Q psy9489         166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPK  245 (279)
Q Consensus       166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~  245 (279)
                      +|+++||++++|||++++|++.+.+.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++
T Consensus         7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~   85 (205)
T 1iru_J            7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLN-LYELKEGRQIKPY   85 (205)
T ss_dssp             SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHH-HHHHHSSSCCCHH
T ss_pred             CCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHH-HHHhhcCCCCCHH
Confidence            689999999999999999999999888888899999999999999999999999999999999988 7788888999999


Q ss_pred             HHHHHHHHHHhhccCCCCccceEEEEEEEeC--CCC
Q psy9489         246 SLHSWLTRVLYNRRSQFDPLWINAFVAGMQN--GEP  279 (279)
Q Consensus       246 ~la~~isr~lys~r~~~~P~~vs~ii~G~D~--~~p  279 (279)
                      .+++.+++.+|++|  +.||++++||||||+  ++|
T Consensus        86 ~la~~l~~~~y~~r--~~P~~v~~lvaG~D~~~~~p  119 (205)
T 1iru_J           86 TLMSMVANLLYEKR--FGPYYTEPVIAGLDPKTFKP  119 (205)
T ss_dssp             HHHHHHHHHHHTTT--TSCCSCCCEEEEECTTSCCE
T ss_pred             HHHHHHHHHHHHhc--CCCceEEEEEEEEeCCCCCe
Confidence            99999999999988  569999999999994  555

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K

Probab=99.74  E-value=1e-17  Score=143.64  Aligned_cols=109  Identities=18%  Similarity=0.280  Sum_probs=102.4

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +++||++++|||++++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~l   79 (204)
T 1iru_L            1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCR-IYELRNKERISVAAA   79 (204)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHH-HHHHHHSSCCCHHHH
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999999998 778888999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++.+++.+|.+|  .+|++|++||||||++||
T Consensus        80 a~~l~~~~~~~r--~~~~~v~~lvaG~D~~gp  109 (204)
T 1iru_L           80 SKLLANMVYQYK--GMGLSMGTMICGWDKRGP  109 (204)
T ss_dssp             HHHHHHHHHTTT--TSCCCBEEEEEEECSSSE
T ss_pred             HHHHHHHHHHhC--CCCeeEEEEEEEEeCCCC
Confidence            999999999887  469999999999998665

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...

Probab=99.74  E-value=1.4e-17  Score=142.79  Aligned_cols=110  Identities=24%  Similarity=0.359  Sum_probs=102.8

Q ss_pred             ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHH
Q psy9489         166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPK  245 (279)
Q Consensus       166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~  245 (279)
                      +|+++||++++|||++++|++.+.+.++..++.+||++++ +++++.+|..+|++.+.+.++.+.+ .++++++.+++++
T Consensus         7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~   84 (204)
T 1ryp_J            7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTN-LYKLKEERAIEPE   84 (204)
T ss_dssp             SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHSSCCCHH
T ss_pred             CCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHH-HHhhccCCCCCHH
Confidence            6899999999999999999999998888888999999999 9999999999999999999999998 7788888999999


Q ss_pred             HHHHHHHHHHhhccCCCCccceEEEEEEEeC--CCC
Q psy9489         246 SLHSWLTRVLYNRRSQFDPLWINAFVAGMQN--GEP  279 (279)
Q Consensus       246 ~la~~isr~lys~r~~~~P~~vs~ii~G~D~--~~p  279 (279)
                      .+++.+++.+|++|  +.||++++||||||+  ++|
T Consensus        85 ~la~~l~~~~y~~~--~~P~~v~~lvaG~D~~~~gp  118 (204)
T 1ryp_J           85 TFTQLVSSSLYERR--FGPYFVGPVVAGINSKSGKP  118 (204)
T ss_dssp             HHHHHHHHHHHTTT--TSCCCEEEEEEEECTTTCCE
T ss_pred             HHHHHHHHHHHHhc--CCCceEEEEEEEEeCCCCce
Confidence            99999999999988  459999999999995  555

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5

Probab=99.74  E-value=9.3e-18  Score=151.27  Aligned_cols=115  Identities=19%  Similarity=0.313  Sum_probs=102.7

Q ss_pred             ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCC
Q psy9489         162 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFV  241 (279)
Q Consensus       162 ~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~  241 (279)
                      .++..|+|+||+++++|||+++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+++ .++++++.+
T Consensus        70 ~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~-~y~~~~~~~  148 (287)
T 3nzj_K           70 IKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCR-LHELREKER  148 (287)
T ss_dssp             ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHH-HHHHHHSSC
T ss_pred             hheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHH-HHHHHhCCC
Confidence            4677999999999999999999999999999999999999999999999999999999999999999998 788888999


Q ss_pred             CCHHHHHHHHHHHHhhccCCCCccceEEEEEEEe-CCCC
Q psy9489         242 LKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQ-NGEP  279 (279)
Q Consensus       242 l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D-~~~p  279 (279)
                      ++++.+++++++.+|.+|  ..||++++|||||| +++|
T Consensus       149 isv~~la~~ls~~l~~~r--~~p~~v~~lvaG~D~~~gp  185 (287)
T 3nzj_K          149 ISVAAASKILSNLVYQYK--GAGLSMGTMICGYTRKEGP  185 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTT--TSCCCEEEEEEEEETTTEE
T ss_pred             CCHHHHHHHHHHHHHhhc--CCCceEEEEEEEEcCCCCC
Confidence            999999999999999887  45999999999999 4454

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2

Probab=99.74  E-value=1e-17  Score=149.21  Aligned_cols=115  Identities=20%  Similarity=0.284  Sum_probs=101.7

Q ss_pred             cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCC
Q psy9489         161 ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGF  240 (279)
Q Consensus       161 ~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~  240 (279)
                      .+++..|+++||++++|||++++|++.+.|.++..++.+||++++++++++++|..+|++.+.+.++.+.+ .++++++.
T Consensus        23 ~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~-~~~~~~~~  101 (261)
T 3nzj_H           23 PKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIE-LHSLYTSR  101 (261)
T ss_dssp             -------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHH-HHHHHHTS
T ss_pred             CcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHH-HhHHhhCC
Confidence            45778999999999999999999999999999999999999999999999999999999999999999998 78888889


Q ss_pred             CCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         241 VLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       241 ~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      +++++.+++.+++.+|.++   +||++++||||||++||
T Consensus       102 ~~~v~~~a~~l~~~l~~~~---~~~gv~llvaG~D~~Gp  137 (261)
T 3nzj_H          102 EPRVVSALQMLKQHLFKYQ---GHIGAYLIVAGVDPTGS  137 (261)
T ss_dssp             CCCHHHHHHHHHHHHHHTT---TCSCEEEEEEEEETTEE
T ss_pred             CCCHHHHHHHHHHHHHHhc---CcccEEEEEEEEeCCCC
Confidence            9999999999999998754   59999999999998665

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...

Probab=99.74  E-value=5.3e-18  Score=149.25  Aligned_cols=122  Identities=12%  Similarity=0.171  Sum_probs=108.8

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++.++++..|+++||++++|||++++|++.+.+.+. .++.+||++++++++++.+|..+|++.+.+.++.+.+ .++
T Consensus        15 QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~   92 (242)
T 1ryp_E           15 QVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAV-THN   92 (242)
T ss_dssp             HHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHH-HHH
T ss_pred             HHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHH-HHH
Confidence            34667788899999999999999999999999988666 8899999999999999999999999999999999998 778


Q ss_pred             cccCCCCCHHHHHHHHHHHHhh--ccCC------CCccceEEEEEEEe-CCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVLYN--RRSQ------FDPLWINAFVAGMQ-NGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~lys--~r~~------~~P~~vs~ii~G~D-~~~p  279 (279)
                      ++++.+++++.+++.+++.++.  ++..      .|||+|++|||||| +++|
T Consensus        93 ~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp  145 (242)
T 1ryp_E           93 LYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGY  145 (242)
T ss_dssp             HHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEE
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCC
Confidence            8889999999999999998864  3433      67999999999999 5554

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E

Probab=99.73  E-value=1.3e-17  Score=148.69  Aligned_cols=119  Identities=17%  Similarity=0.196  Sum_probs=106.3

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH  236 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~  236 (279)
                      +++.++++..|+++||++++||||+++|++.+.+. .  ++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++
T Consensus        22 vEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl-~--~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~   97 (263)
T 1iru_F           22 IEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL-A--AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECL-DSRF   97 (263)
T ss_dssp             HHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTT-B--CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHcCCcEEEEEeCCEEEEEEeccccccc-c--cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHH-HHHH
Confidence            45667788899999999999999999999988863 2  478999999999999999999999999999999998 7788


Q ss_pred             ccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeCCCC
Q psy9489         237 NDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       237 ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      .++.+++++.+++.+++.++  +++...+||+|++||||||++||
T Consensus        98 ~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp  142 (263)
T 1iru_F           98 VFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGP  142 (263)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEE
T ss_pred             HcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCC
Confidence            89999999999999999995  55556789999999999997655

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...

Probab=99.73  E-value=1.9e-17  Score=142.04  Aligned_cols=114  Identities=21%  Similarity=0.278  Sum_probs=105.2

Q ss_pred             cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCC
Q psy9489         161 ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGF  240 (279)
Q Consensus       161 ~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~  240 (279)
                      .+++..|+++||++++|||++++|++.+.+.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.
T Consensus         3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~   81 (205)
T 1ryp_H            3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLE-LYTSQYGT   81 (205)
T ss_dssp             TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHH-HHHHHHSS
T ss_pred             CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHH-HHHHHhCC
Confidence            46788999999999999999999999999889999999999999999999999999999999999999998 67888888


Q ss_pred             CCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489         241 VLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       241 ~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                       ++++.+++.+++.+|.+|.  + |++++||||||+ ++|
T Consensus        82 -~~v~~la~~l~~~~~~~~~--~-~~~~~lvaG~D~~~gp  117 (205)
T 1ryp_H           82 -PSTETAASVFKELCYENKD--N-LTAGIIVAGYDDKNKG  117 (205)
T ss_dssp             -CCHHHHHHHHHHHHHHTTT--T-CCEEEEEEEEETTTEE
T ss_pred             -CCHHHHHHHHHHHHHhhhc--C-ceEEEEEEEEecCCCc
Confidence             9999999999999998873  2 999999999996 444

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...

Probab=99.72  E-value=1.5e-17  Score=147.19  Aligned_cols=123  Identities=14%  Similarity=0.160  Sum_probs=106.9

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++.++++..|+++||++++|||++++|++.+ ++++..++.+||++++++++++.+|..+|++.+.+.++.+.+..+.
T Consensus        20 QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~   98 (250)
T 1ryp_B           20 QIDYALTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYK   98 (250)
T ss_dssp             HHHHHHHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHhHHHHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHH
Confidence            346677889999999999999999999999987 7889999999999999999999999999999999999998873266


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeC-CCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      ..++.+++++.+++.+.+.+  +.++.+++||+|++||||||+ ++|
T Consensus        99 ~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp  145 (250)
T 1ryp_B           99 RIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGF  145 (250)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEE
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCc
Confidence            66778999999888888876  444445789999999999996 454

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J

Probab=99.72  E-value=2.2e-17  Score=141.18  Aligned_cols=110  Identities=17%  Similarity=0.276  Sum_probs=99.7

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +++||++++|||++++|++.++|+++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus         2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~~   80 (201)
T 1iru_K            2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQ-LYKMRNGYELSPTAA   80 (201)
T ss_dssp             CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHH-HHHHHHSSCCCHHHH
T ss_pred             ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHH-HHHHHcCCCCCHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999999998 788888899999999


Q ss_pred             HHHHHHHH-hhccCCCCccceEEEEEEEeC-CCC
Q psy9489         248 HSWLTRVL-YNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       248 a~~isr~l-ys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      ++++++.+ |.+|.+ +||++++||||||+ ++|
T Consensus        81 a~~~~~~l~~~~~~~-~p~~~~~lvaG~D~~~gp  113 (201)
T 1iru_K           81 ANFTRRNLADCLRSR-TPYHVNLLLAGYDEHEGP  113 (201)
T ss_dssp             HHHHHHHHHHHHTSS-SCCCEEEEEEEEETTTEE
T ss_pred             HHHHHHHHHHHHhcC-CCccEEEEEEEEeCCCCe
Confidence            99998876 554433 69999999999997 454

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...

Probab=99.72  E-value=3.2e-17  Score=139.83  Aligned_cols=111  Identities=18%  Similarity=0.294  Sum_probs=100.3

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +++||++++|||++++|++.+.+.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus         2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~l   80 (198)
T 1ryp_K            2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQ-LYSIREDYELSPQAV   80 (198)
T ss_dssp             CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHH-HHHHHHTSCCCHHHH
T ss_pred             ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHH-HHHHhcCCCCCHHHH
Confidence            4789999999999999999999888888999999999999999999999999999999999998 778888899999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeC--CCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQN--GEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~--~~p  279 (279)
                      ++.+++.+|..+...+||++++||||||+  ++|
T Consensus        81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p  114 (198)
T 1ryp_K           81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKP  114 (198)
T ss_dssp             HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEE
T ss_pred             HHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCc
Confidence            99999999875322249999999999995  454

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...

Probab=99.72  E-value=3.2e-17  Score=141.41  Aligned_cols=109  Identities=20%  Similarity=0.310  Sum_probs=101.2

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +++||++++|||++++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~l   79 (212)
T 1ryp_L            1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCR-LHELREKERISVAAA   79 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHH-HHHHHHSSCCCHHHH
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHH-HHHHHcCCCCCHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999999998 678888899999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEe-CCCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQ-NGEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D-~~~p  279 (279)
                      ++++++.+|.+|  ..||++++|||||| +++|
T Consensus        80 a~~l~~~~~~~~--~~p~~v~~lvaG~D~~~gp  110 (212)
T 1ryp_L           80 SKILSNLVYQYK--GAGLSMGTMICGYTRKEGP  110 (212)
T ss_dssp             HHHHHHHHHHTT--TSCCCBEEEEEEEETTTEE
T ss_pred             HHHHHHHHHhhC--CCCceEEEEEEEEeCCCCC
Confidence            999999999877  35999999999999 4444

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N

Probab=99.72  E-value=3.5e-17  Score=140.39  Aligned_cols=108  Identities=21%  Similarity=0.222  Sum_probs=100.8

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +++||++++|||++++|++.+.+.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~l   79 (205)
T 1iru_H            1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLG-FHSIELNEPPLVHTA   79 (205)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHTSCCCHHHH
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHH
Confidence            4789999999999999999999889999999999999999999999999999999999999998 778888899999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      ++.+++.+|.+|   +||++++||||||+ ++|
T Consensus        80 a~~l~~~~~~~~---~p~~~~~lvaG~D~~~gp  109 (205)
T 1iru_H           80 ASLFKEMCYRYR---EDLMAGIIIAGWDPQEGG  109 (205)
T ss_dssp             HHHHHHHHHHTT---TTCCEEEEEEEEETTTEE
T ss_pred             HHHHHHHHHhcC---cCccEEEEEEEEeCCCCC
Confidence            999999999877   29999999999997 444

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H

Probab=99.71  E-value=4.1e-17  Score=143.09  Aligned_cols=108  Identities=22%  Similarity=0.281  Sum_probs=100.8

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      ++++|++++|||++++|++.+.+.++..++.+||++++++++++++|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus         1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~l   79 (234)
T 3unf_H            1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKME-LHALSTGREPRVATV   79 (234)
T ss_dssp             CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHH-HHHHHHCSCCCHHHH
T ss_pred             CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHH-hhHHhcCCCCCHHHH
Confidence            5789999999999999999999988999999999999999999999999999999999999988 788889999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++.+++.+|.++   +||++++||||||++||
T Consensus        80 a~~l~~~l~~~~---~p~~v~llvaG~D~~gp  108 (234)
T 3unf_H           80 TRILRQTLFRYQ---GHVGASLVVGGVDLNGP  108 (234)
T ss_dssp             HHHHHHHHHHTT---TCSCEEEEEEEEETTEE
T ss_pred             HHHHHHHHHhcC---CCccEEEEEEEEeCCCC
Confidence            999999998754   59999999999998665

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...

Probab=99.71  E-value=5.6e-17  Score=141.03  Aligned_cols=108  Identities=19%  Similarity=0.281  Sum_probs=100.8

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +++||++++|||++++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++.+++++++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~~   79 (222)
T 1ryp_I            1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIE-LHSLYTSREPRVVSA   79 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHTSCCCHHHH
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHH-HHHHHcCCCCCHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999999998 678888999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++.+++.+|.++   +||++++||||||++||
T Consensus        80 a~~l~~~l~~~~---~p~~v~~lvaG~D~~gp  108 (222)
T 1ryp_I           80 LQMLKQHLFKYQ---GHIGAYLIVAGVDPTGS  108 (222)
T ss_dssp             HHHHHHHHHHTT---TCSCEEEEEEEEETTEE
T ss_pred             HHHHHHHHhhcC---CCCCeeEEEEEEeCCCC
Confidence            999999998765   69999999999998665

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4

Probab=99.70  E-value=4.3e-17  Score=142.93  Aligned_cols=109  Identities=16%  Similarity=0.256  Sum_probs=100.8

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +++|||+++|||++++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+.++++.+++++.+
T Consensus         1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~l   79 (235)
T 1q5q_H            1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELE-HYEKIEGVPLTFDGK   79 (235)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHSSCCCHHHH
T ss_pred             CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHH-HhHHHhCCCCCHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999999998 678888999999999


Q ss_pred             HHHHHHHHhhccCC-CCccceEEEEEEEeCC
Q psy9489         248 HSWLTRVLYNRRSQ-FDPLWINAFVAGMQNG  277 (279)
Q Consensus       248 a~~isr~lys~r~~-~~P~~vs~ii~G~D~~  277 (279)
                      ++.+++.++..+.. ++||+|++||||||++
T Consensus        80 a~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~  110 (235)
T 1q5q_H           80 ANRLASMVRGNLGAAMQGLAVVPLLVGYDLD  110 (235)
T ss_dssp             HHHHHHHHHTTHHHHTTTCCEEEEEEEECTT
T ss_pred             HHHHHHHHHHHHHhhhcccceEEEEEEEECC
Confidence            99999999864422 6799999999999975

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D

Probab=99.70  E-value=4.5e-17  Score=143.94  Aligned_cols=118  Identities=16%  Similarity=0.209  Sum_probs=101.3

Q ss_pred             ccchhhhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhc
Q psy9489         151 QYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI  230 (279)
Q Consensus       151 ~~l~~~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~  230 (279)
                      |...+..++..+++..|+++||++++||||+++|++        .++.+||+++++|++++.+|..+|++.+...++.+.
T Consensus        11 ~~~~~r~EYA~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~   82 (248)
T 3mi0_A           11 QAMRERSELARKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFA   82 (248)
T ss_dssp             HHHHHHHHHHHHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             HhcccchHHHHHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHH
Confidence            334455677788999999999999999999999999        357899999999999999999999999999888876


Q ss_pred             ccccccccC-CCCCHHHHHHHHHHHH---hhccCCCCccceEEEEEEEeC----CCC
Q psy9489         231 LDDDLHNDG-FVLKPKSLHSWLTRVL---YNRRSQFDPLWINAFVAGMQN----GEP  279 (279)
Q Consensus       231 ~~~~~~ee~-~~l~~~~la~~isr~l---ys~r~~~~P~~vs~ii~G~D~----~~p  279 (279)
                      + .+.+.++ .+++++.+++.+++.+   |+++  ++||+|++||||||+    +||
T Consensus        83 ~-l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~--~rP~gv~~liaG~D~~~~~~gp  136 (248)
T 3mi0_A           83 D-TRGYAYDRRDVTGRQLANVYAQTLGTIFTEQ--AKPYEVELCVAEVAHYGETKRP  136 (248)
T ss_dssp             H-HHHHHSCGGGCCHHHHHHHHHHHHHHHHHHS--SSCCCEEEEEEECCCTTCCCCC
T ss_pred             H-HHHHhcCCCCCCHHHHHHHHHHHHHHHhccC--CCCceEEEEEEEEcCCCCCCCC
Confidence            5 5566666 7899999999999765   6653  789999999999997    566

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H

Probab=99.70  E-value=3.8e-17  Score=147.75  Aligned_cols=116  Identities=16%  Similarity=0.226  Sum_probs=105.7

Q ss_pred             cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCC
Q psy9489         161 ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGF  240 (279)
Q Consensus       161 ~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~  240 (279)
                      .+++..|+++|||+++||||+++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++.++.
T Consensus        59 ~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~-~y~~~~g~  137 (294)
T 1q5r_H           59 GDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELE-HYEKIEGV  137 (294)
T ss_dssp             -CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHH-HHHHHHSS
T ss_pred             HHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHH-HhhHhhCC
Confidence            35577899999999999999999999999999999999999999999999999999999999999999998 77888899


Q ss_pred             CCCHHHHHHHHHHHHhhccC-CCCccceEEEEEEEeCC
Q psy9489         241 VLKPKSLHSWLTRVLYNRRS-QFDPLWINAFVAGMQNG  277 (279)
Q Consensus       241 ~l~~~~la~~isr~lys~r~-~~~P~~vs~ii~G~D~~  277 (279)
                      +++++.+++.+++.++..+. .++||+|++||||||++
T Consensus       138 ~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~  175 (294)
T 1q5r_H          138 PLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLD  175 (294)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTT
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCC
Confidence            99999999999999976432 25799999999999975

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H

Probab=99.70  E-value=8.6e-17  Score=140.97  Aligned_cols=108  Identities=18%  Similarity=0.304  Sum_probs=100.6

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +++||++++|||++++|++.+.|.++..++.+||++++++++++++|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus         1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~v~~l   79 (234)
T 1iru_I            1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLE-LHSLSTGRLPRVVTA   79 (234)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHH-HHHHHHCSCCCHHHH
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHH-HHHHhcCCCCCHHHH
Confidence            5789999999999999999999888888999999999999999999999999999999999988 778888899999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++.+++.+|.+|   +||++++||||||++||
T Consensus        80 a~~l~~~l~~~~---~~~~v~llvaG~D~~gp  108 (234)
T 1iru_I           80 NRMLKQMLFRYR---GYIGAALVLGGVDVTGP  108 (234)
T ss_dssp             HHHHHHHHHHTT---TCSCEEEEEEEECSSCE
T ss_pred             HHHHHHHHHhcC---CCCceeEEEEEEcCCCC
Confidence            999999998765   59999999999998665

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H

Probab=99.68  E-value=9.4e-17  Score=145.03  Aligned_cols=113  Identities=19%  Similarity=0.253  Sum_probs=93.9

Q ss_pred             ccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCC
Q psy9489         164 LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLK  243 (279)
Q Consensus       164 i~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~  243 (279)
                      +..|+++||++++||||+++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++.++.+++
T Consensus        54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~-~y~~~~~~~i~  132 (291)
T 2jay_A           54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELE-HYEKLEGVPLT  132 (291)
T ss_dssp             ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHH-HHHHHHSSCCC
T ss_pred             ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHH-HhhhhcCCCCC
Confidence            67899999999999999999999999989999999999999999999999999999999999999998 67888899999


Q ss_pred             HHHHHHHHHHHHhhccC-CCCccceEEEEEEEeCC
Q psy9489         244 PKSLHSWLTRVLYNRRS-QFDPLWINAFVAGMQNG  277 (279)
Q Consensus       244 ~~~la~~isr~lys~r~-~~~P~~vs~ii~G~D~~  277 (279)
                      ++.+++.+++.++.++. .++||+|++||||||++
T Consensus       133 v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~  167 (291)
T 2jay_A          133 FAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIH  167 (291)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTT
T ss_pred             HHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCC
Confidence            99999999999987642 25699999999999974

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A

Probab=99.67  E-value=1.8e-16  Score=140.90  Aligned_cols=116  Identities=16%  Similarity=0.191  Sum_probs=100.3

Q ss_pred             chhhhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccc
Q psy9489         153 LNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILD  232 (279)
Q Consensus       153 l~~~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~  232 (279)
                      +.+.+++..+++..|+++||++++||||+++|++        +++.+||++++++++++.+|..+|++.+.+.++.+++ 
T Consensus        13 ~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~-   83 (259)
T 1q5q_A           13 MRDRSELARKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHAD-   83 (259)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHH-
Confidence            4456788888999999999999999999999998        3678999999999999999999999999998888777 


Q ss_pred             ccccccC-CCCCHHHHHHHHHHH---HhhccCCCCccceEEEEEEEe----CCCC
Q psy9489         233 DDLHNDG-FVLKPKSLHSWLTRV---LYNRRSQFDPLWINAFVAGMQ----NGEP  279 (279)
Q Consensus       233 ~~~~ee~-~~l~~~~la~~isr~---lys~r~~~~P~~vs~ii~G~D----~~~p  279 (279)
                      .+.++.. .+++++.+++.+++.   .|+.+  ++||+|++||||||    +++|
T Consensus        84 ~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~--~rP~~v~~lvaG~D~~~~~~gp  136 (259)
T 1q5q_A           84 MRGYSYDRRDVTGRSLANAYAQTLGTIFTEQ--PKPYEVEICVAEVGRVGSPKAP  136 (259)
T ss_dssp             HHHHHSCGGGCCHHHHHHHHHHHHHHHHHHS--SSCCCEEEEEEECCCSSCCCCC
T ss_pred             HHHHHcCCcCCCHHHHHHHHHHHHHHHhccC--CCCceEEEEEEEEcccCCCCCC
Confidence            4454444 589999999999996   47644  78999999999999    5666

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4

Probab=99.45  E-value=4.5e-13  Score=111.57  Aligned_cols=97  Identities=20%  Similarity=0.165  Sum_probs=83.0

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEe-cccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKS  246 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i-~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~  246 (279)
                      ++++|++++|+|++++|++.+.|.++.+++.+||+++ +++++++.+|..+|++.+.+.++.+.+ .++.+     .++.
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~~-----~~~~   74 (171)
T 1m4y_A            1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLR-EWGGN-----LTKA   74 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHH-HTTTC-----HHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHH-Hhccc-----HHHH
Confidence            5789999999999999999999999999999999999 999999999999999999999999988 45543     2677


Q ss_pred             HHHHHHHHHhhccCCCCccceEEEEE
Q psy9489         247 LHSWLTRVLYNRRSQFDPLWINAFVA  272 (279)
Q Consensus       247 la~~isr~lys~r~~~~P~~vs~ii~  272 (279)
                      +++..+ .+++.| .++||++++++|
T Consensus        75 ~~~l~~-~~~~~~-~~~~~~~~~lv~   98 (171)
T 1m4y_A           75 AVELAK-DWRTDR-VLRRLEALLLVA   98 (171)
T ss_dssp             HHHHHH-HHHHCT-TGGGCCCEEEEE
T ss_pred             HHHHHH-HHHHhC-CCCceEEEEEEE
Confidence            777654 566543 345799999988

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A

Probab=99.39  E-value=1.5e-12  Score=109.43  Aligned_cols=100  Identities=14%  Similarity=0.156  Sum_probs=83.4

Q ss_pred             cceeeEEEEEeCCcEEEEEcCCCccCce-eeecCCCceEEe-cccEEEEeccChhhHHHHHHHHHhhcccccccccCCCC
Q psy9489         165 TTGTSVLGLVFNGGVILAADSAGYYGSM-MRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVL  242 (279)
Q Consensus       165 ~~g~tvlgi~~~~gvlia~D~~gs~g~l-i~~~~~~kI~~i-~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l  242 (279)
                      .+|+|++|++++|+|++|+|++.++|.+ +.+++.+||+++ +++++++.+|..+|++.+.+.++.+.+ .++   +  .
T Consensus         3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~-~y~---g--~   76 (180)
T 2z3b_A            3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLE-EYN---G--N   76 (180)
T ss_dssp             BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHH-HTT---T--C
T ss_pred             CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHH-Hhc---C--C
Confidence            3689999999999999999999999888 999999999999 999999999999999999999999987 444   2  3


Q ss_pred             CHHHHHHHHHHHHhhccCCCCccceEEEEE
Q psy9489         243 KPKSLHSWLTRVLYNRRSQFDPLWINAFVA  272 (279)
Q Consensus       243 ~~~~la~~isr~lys~r~~~~P~~vs~ii~  272 (279)
                      .++.+++ +.+.++. +..+|||++++|||
T Consensus        77 ~~~~~~~-l~~~~~~-~~~~rp~~~~~lva  104 (180)
T 2z3b_A           77 LKRAAVE-LAKEWRS-DKVLRKLEAMLIVM  104 (180)
T ss_dssp             HHHHHHH-HHHHHHH-CTTGGGCCCCEEEE
T ss_pred             hHHHHHH-HHHHHHh-hhCcCcceEEEEEE
Confidence            3444443 4444443 33467999999998

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A

Probab=99.39  E-value=2.4e-12  Score=107.52  Aligned_cols=98  Identities=16%  Similarity=0.181  Sum_probs=81.6

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEe-cccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKS  246 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i-~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~  246 (279)
                      +|+||++++|+|++++|++.+++.++.+++.+||+++ +++++++.+|..+|++.+.+.++.+.+ .++.      ....
T Consensus         1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~-~~~~------~~~~   73 (174)
T 1g3k_A            1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLE-MHQG------HLLK   73 (174)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHH-HTTT------CHHH
T ss_pred             CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHH-HhcC------cHHH
Confidence            5789999999999999999999989999999999999 999999999999999999999999987 4443      3344


Q ss_pred             HHHHHHHHHhhccCCCCccceEEEEEEEe
Q psy9489         247 LHSWLTRVLYNRRSQFDPLWINAFVAGMQ  275 (279)
Q Consensus       247 la~~isr~lys~r~~~~P~~vs~ii~G~D  275 (279)
                      .+..+++.++.+| .++|+  +++++|+|
T Consensus        74 ~~~~l~~~~~~~~-~~r~~--~~~l~g~d   99 (174)
T 1g3k_A           74 SAVELAKDWRTDR-ALRKL--EAMLIVAD   99 (174)
T ss_dssp             HHHHHHHHHHHST-TGGGC--CCEEEEEC
T ss_pred             HHHHHHHHHHhcc-CcCcc--eEEEEEEC
Confidence            5556677777655 23465  56777887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d1ryp2_	233	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	8e-21
d1ryp2_	233	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	3e-13
d1ryp2_	233	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	7e-06
d1iru2_	217	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	9e-21
d1iru2_	217	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	6e-13
d1iru2_	217	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	2e-07
d1rypk_	198	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	2e-15
d1rypk_	198	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	8e-11
d1rypk_	198	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	8e-05
d1rypl_	212	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	3e-13
d1rypl_	212	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	1e-09
d1rypl_	212	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	3e-04
d1q5qh_	224	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	4e-13
d1q5qh_	224	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	1e-09
d1q5qh_	224	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	0.001
d1irul_	201	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	2e-12
d1irul_	201	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	5e-10
d1irul_	201	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	0.001
d1ryph_	205	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	3e-12
d1ryph_	205	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	1e-09
d1ryph_	205	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	5e-04
d1yarh1	203	d.153.1.4 (H:1-203) Proteasome beta subunit (catal	4e-12
d1yarh1	203	d.153.1.4 (H:1-203) Proteasome beta subunit (catal	1e-08
d1iruk_	199	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	5e-12
d1iruk_	199	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	2e-08
d1ryp1_	222	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	6e-12
d1ryp1_	222	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	6e-09
d1ryp1_	222	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	0.001
d1iruj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	1e-11
d1iruj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	4e-09
d1irui_	220	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	4e-11
d1irui_	220	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	3e-09
d1irui_	220	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	2e-04
d1q5qa_	227	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	7e-11
d1q5qa_	227	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	7e-07
d1iruh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	9e-11
d1iruh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	7e-08
d1iruh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	0.001
d1rypi_	222	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	2e-10
d1rypi_	222	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	6e-09
d1rypi_	222	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	3e-04
d1rypj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	3e-10
d1rypj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	6e-07
d1m4ya_	171	d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma	3e-10
d1m4ya_	171	d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma	2e-09
d1irue_	234	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	4e-10
d1irue_	234	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	4e-05
d1iru1_	213	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	6e-10
d1iru1_	213	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	7e-08
d1rypd_	241	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	1e-09
d1rypd_	241	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	5e-06
d1j2qh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	1e-09
d1j2qh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	1e-07
d1j2qh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	0.004
d1yara1	221	d.153.1.4 (A:13-233) Proteasome alpha subunit (non	1e-09
d1yara1	221	d.153.1.4 (A:13-233) Proteasome alpha subunit (non	1e-05
d1rypc_	244	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	2e-09
d1rypc_	244	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	2e-06
d1rypc_	244	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	0.001
d1iruc_	250	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	5e-09
d1iruc_	250	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	2e-06
d1rype_	242	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	1e-08
d1rype_	242	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	2e-06
d1irub_	233	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	1e-08
d1irub_	233	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	2e-05
d1j2pa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	2e-08
d1j2pa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	6e-05
d1rypg_	244	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	3e-08
d1rypg_	244	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	1e-04
d1rypg_	244	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	0.004
d1g3ka_	173	d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i	5e-08
d1g3ka_	173	d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i	1e-07
d1rypb_	250	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	9e-08
d1rypb_	250	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	0.002
d1iruf_	238	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	1e-07
d1iruf_	238	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	0.002
d1irug_	245	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	2e-07
d1irug_	245	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	3e-04
d1irug_	245	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	0.004
d2z3ba1	180	d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus	5e-07
d2z3ba1	180	d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus	3e-06
d1irud_	243	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	3e-06
d1irud_	243	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	0.001
d1rypf_	233	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	4e-05
d1irua_	244	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	5e-05
d1irua_	244	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	2e-04
d1rypa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	0.004

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.3 bits (213), Expect = 8e-21
 Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 4/115 (3%)

Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
           P+ TGTSV+ + ++ GVI+AAD+ G YGS++RFN   R++ +   T++G   D +D Q++
Sbjct: 4   PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 63

Query: 223 NDIVKQKI----LDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
             ++K  +     D+ L +    L+P  +  +L  V+Y RRS+ +PLW    VAG
Sbjct: 64  ERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAG 118

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.5 bits (159), Expect = 3e-13
 Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 4/147 (2%)

Query: 94  PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
           P+ TGTSV+ + ++ GVI+AAD+ G YGS++RFN   R++ +   T++G   D +D Q++
Sbjct: 4   PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 63

Query: 154 NDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAG 213
             ++K  +T           + +    L       Y + + +    ++  +    I+   
Sbjct: 64  ERLLKDLVTENAYDNP----LADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGV 119

Query: 214 NDYADFQYLNDIVKQKILDDDLHNDGF 240
               D       +            GF
Sbjct: 120 QSNGDQFLRYVNLLGVTYSSPTLATGF 146

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (103), Expect = 7e-06
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKN---PQMSKEEAIALIKTCMDLLY 57
           FL  V+ LG  Y    L+ GFG H+A PLLR+  ++    P+ + + A   I   M +LY
Sbjct: 126 FLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLY 185

Query: 58  VRDARSG 64
            RDARS 
Sbjct: 186 YRDARSS 192

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.0 bits (212), Expect = 9e-21
 Identities = 59/117 (50%), Positives = 83/117 (70%)

Query: 163 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 222
           P+ TGTSVLG+ F GGV++AAD  G YGS+ RF +  RIM++N  T+LGA  DYADFQYL
Sbjct: 4   PMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYL 63

Query: 223 NDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
             ++ Q ++D++L  DG    P+++HSWLTR +Y+RRS+ +PLW    + G  +GE 
Sbjct: 64  KQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES 120

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.4 bits (156), Expect = 6e-13
 Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 8/131 (6%)

Query: 94  PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYL 153
           P+ TGTSVLG+ F GGV++AAD  G YGS+ RF +  RIM++N  T+LGA  DYADFQYL
Sbjct: 4   PMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYL 63

Query: 154 NDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAG 213
             ++ Q +            +   G   +  +   + +   ++   ++  +    ++G  
Sbjct: 64  KQVLGQMVI--------DEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGY 115

Query: 214 NDYADFQYLND 224
            D   F    D
Sbjct: 116 ADGESFLGYVD 126

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 34/64 (53%), Positives = 44/64 (68%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
           FLG VD LG AYE   L+ G+G ++A PLLR+  EK P +S+ EA  L++ CM +LY RD
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRD 180

Query: 61  ARSG 64
           ARS 
Sbjct: 181 ARSY 184

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.0 bits (173), Expect = 2e-15
 Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
             +LG+     VILA+  A   G  +  +   +  Q++  T++    +  D     + ++
Sbjct: 2   DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61

Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
             I    +    + L P+++ S++ + L        P  +N  + G
Sbjct: 62  ANIQLYSIRE-DYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGG 106

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (139), Expect = 8e-11
 Identities = 11/62 (17%), Positives = 25/62 (40%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
             +LG+     VILA+  A   G  +  +   +  Q++  T++    +  D     + ++
Sbjct: 2   DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61

Query: 159 QK 160
             
Sbjct: 62  AN 63

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (93), Expect = 8e-05
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
            L  +D LGT  E    + G+       LL  +    P M+ EE + L+K C+  L  R 
Sbjct: 115 ELYQIDYLGTKVELPYGAHGYSGFYTFSLL--DHHYRPDMTTEEGLDLLKLCVQELEKRM 172

Query: 61  ARSG 64
               
Sbjct: 173 PMDF 176

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.8 bits (157), Expect = 3e-13
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 3/109 (2%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
           T+ L   F GG+I+A DS    G+ +      R+++IN F +       AD Q+    + 
Sbjct: 1   TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60

Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
            +    +L      +   +    L+ ++Y  +     L +   + G   
Sbjct: 61  SQCRLHELRE-KERISVAAASKILSNLVYQYK--GAGLSMGTMICGYTR 106

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (131), Expect = 1e-09
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
           T+ L   F GG+I+A DS    G+ +      R+++IN F +       AD Q+    + 
Sbjct: 1   TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60

Query: 159 QK 160
            +
Sbjct: 61  SQ 62

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
            +  VD  GT  +  I   G G   A  +L         +S E+A+ L K  +     RD
Sbjct: 111 TIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSN--YKWDLSVEDALYLGKRSILAAAHRD 168

Query: 61  ARSG 64
           A SG
Sbjct: 169 AYSG 172

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 64.9 bits (157), Expect = 4e-13
 Identities = 16/107 (14%), Positives = 40/107 (37%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
           T+++ L + GGV+LA D     G+++   D  ++   ++++  G          L  +  
Sbjct: 1   TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60

Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
            ++   +      +      +   + V  N  +    L +   + G 
Sbjct: 61  VELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGY 107

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 54.9 bits (131), Expect = 1e-09
 Identities = 12/62 (19%), Positives = 28/62 (45%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
           T+++ L + GGV+LA D     G+++   D  ++   ++++  G          L  +  
Sbjct: 1   TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60

Query: 159 QK 160
            +
Sbjct: 61  VE 62

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 2/67 (2%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
               V            + G G+  A   L  +   +P   +E A+      +      D
Sbjct: 121 VSYDVVGGRYEERAGYHAVGSGSLFAKSAL--KKIYSPDSDEETALRAAIESLYDAADDD 178

Query: 61  ARSGAKN 67
           + +G  +
Sbjct: 179 SATGGPD 185

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.5 bits (151), Expect = 2e-12
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 3/112 (2%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
           T+ L   F  GVI+AADS    G+ +      ++++IN + +       AD  +   ++ 
Sbjct: 1   TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60

Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
           ++    +L N    +   +    L  ++Y    +   L +   + G     P
Sbjct: 61  RQCRIYELRN-KERISVAAASKLLANMVYQY--KGMGLSMGTMICGWDKRGP 109

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.5 bits (133), Expect = 5e-10
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
           T+ L   F  GVI+AADS    G+ +      ++++IN + +       AD  +   ++ 
Sbjct: 1   TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60

Query: 159 QK 160
           ++
Sbjct: 61  RQ 62

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 5   VDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARSG 64
           VD  G        S G G+  A  ++ +    +  +  E+A  L +  +     RDA SG
Sbjct: 114 VDSEGNRISGATFSVGSGSVYAYGVMDRGYSYD--LEVEQAYDLARRAIYQATYRDAYSG 171

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.1 bits (150), Expect = 3e-12
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 5/110 (4%)

Query: 165 TTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLND 224
           + G S++ + F  GVIL ADS    G+ +      ++ +++           AD Q + D
Sbjct: 7   SLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIAD 66

Query: 225 IVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
           IV+  +              ++  S    + Y  +   D L     VAG 
Sbjct: 67  IVQYHLELYTSQYG--TPSTETAASVFKELCYENK---DNLTAGIIVAGY 111

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.7 bits (131), Expect = 1e-09
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 96  TTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLND 155
           + G S++ + F  GVIL ADS    G+ +      ++ +++           AD Q + D
Sbjct: 7   SLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIAD 66

Query: 156 IVKQ 159
           IV+ 
Sbjct: 67  IVQY 70

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 5   VDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDARSG 64
           +   G+ ++      G G+        +       MSKEE +  IK  +      D  SG
Sbjct: 122 IPLGGSVHKLPYAIAGSGSTFIYGYCDKN--FRENMSKEETVDFIKHSLSQAIKWDGSSG 179

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 61.7 bits (149), Expect = 4e-12
 Identities = 18/110 (16%), Positives = 45/110 (40%), Gaps = 3/110 (2%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
           T+ +G+     VI+A +      + +   +  ++ QI+ +T +       D Q L   +K
Sbjct: 1   TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMK 60

Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG 277
            ++    L      +  +++ + L+ +L   +  + P  +   V G+   
Sbjct: 61  AELELYRLQR-RVNMPIEAVATLLSNMLNQVK--YMPYMVQLLVGGIDTA 107

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.3 bits (122), Expect = 1e-08
 Identities = 12/62 (19%), Positives = 27/62 (43%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
           T+ +G+     VI+A +      + +   +  ++ QI+ +T +       D Q L   +K
Sbjct: 1   TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMK 60

Query: 159 QK 160
            +
Sbjct: 61  AE 62

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.4 bits (148), Expect = 5e-12
 Identities = 16/107 (14%), Positives = 45/107 (42%), Gaps = 1/107 (0%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
             ++G+     V++A+D       +   +D  ++ ++++  +L    +  D     + ++
Sbjct: 2   EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61

Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
           + +       +G+ L P +  ++  R L +      P  +N  +AG 
Sbjct: 62  KNVQLYK-MRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGY 107

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 7/62 (11%), Positives = 27/62 (43%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
             ++G+     V++A+D       +   +D  ++ ++++  +L    +  D     + ++
Sbjct: 2   EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61

Query: 159 QK 160
           + 
Sbjct: 62  KN 63

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (148), Expect = 6e-12
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 2/109 (1%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            G ++LG+      +LA D+       +     P++       ++ A    AD   L   
Sbjct: 8   NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKR 67

Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
            K  +      ++   L   S    +  +LY +  +F P +++  +AG+
Sbjct: 68  FKNSVKWYHFDHNDKKLSINSAARNIQHLLYGK--RFFPYYVHTIIAGL 114

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (126), Expect = 6e-09
 Identities = 12/64 (18%), Positives = 22/64 (34%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
            G ++LG+      +LA D+       +     P++       ++ A    AD   L   
Sbjct: 8   NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKR 67

Query: 157 VKQK 160
            K  
Sbjct: 68  FKNS 71

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 15/79 (18%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQE---------------TEKNPQMSKEEA 45
            + + D +G+   ++  + G    + +P L  +                +    +S EE 
Sbjct: 121 AVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEV 180

Query: 46  IALIKTCMDLLYVRDARSG 64
           I L++        R  + G
Sbjct: 181 IKLVRDSFTSATERHIQVG 199

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.6 bits (146), Expect = 1e-11
 Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 3/108 (2%)

Query: 167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 226
           G +V+ +     V +AAD      + +   D  +I  +     +G      D Q +   +
Sbjct: 7   GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 66

Query: 227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
           K ++ +     +G  +KP +L S +  +LY +  +F P +    +AG+
Sbjct: 67  KFRL-NLYELKEGRQIKPYTLMSMVANLLYEK--RFGPYYTEPVIAGL 111

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.9 bits (126), Expect = 4e-09
 Identities = 12/62 (19%), Positives = 23/62 (37%)

Query: 98  GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 157
           G +V+ +     V +AAD      + +   D  +I  +     +G      D Q +   +
Sbjct: 7   GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 66

Query: 158 KQ 159
           K 
Sbjct: 67  KF 68

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.0 bits (142), Expect = 4e-11
 Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 4/112 (3%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
           T++ G+V+  G++L AD+    G ++   +C +I  I+           AD      ++ 
Sbjct: 1   TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60

Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
             +    L       +   + +    +          +     + G+    P
Sbjct: 61  SNLELHSLSTG----RLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDVTGP 108

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.6 bits (128), Expect = 3e-09
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
           T++ G+V+  G++L AD+    G ++   +C +I  I+           AD      ++ 
Sbjct: 1   TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60

Query: 159 QK 160
             
Sbjct: 61  SN 62

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 3   GTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRDAR 62
            ++   G+  +   ++ G G+  A+ +   +   +  M +EEA  L+   +      D  
Sbjct: 111 YSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPD--MEEEEAKNLVSEAIAAGIFNDLG 168

Query: 63  SGA--------KNGPSLGKYHDFPNVLPHYFRR 87
           SG+        KN     + +  PN       R
Sbjct: 169 SGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGR 201

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 58.5 bits (141), Expect = 7e-11
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 9/128 (7%)

Query: 151 QYLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL 210
           Q + D  +     +  G SV+ L F  GV+  A++              ++ ++      
Sbjct: 3   QIMRDRSELARKGIARGRSVVVLTFRDGVLFVAEN--------PSTALHKVSELYDRLGF 54

Query: 211 GAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRV-LYNRRSQFDPLWINA 269
            A   Y +F+ L               D   +  +SL +   +        Q  P  +  
Sbjct: 55  AAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEI 114

Query: 270 FVAGMQNG 277
            VA +   
Sbjct: 115 CVAEVGRV 122

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 46.6 bits (110), Expect = 7e-07
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 8/65 (12%)

Query: 95  LTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLN 154
           +  G SV+ L F  GV+  A++              ++ ++       A   Y +F+ L 
Sbjct: 16  IARGRSVVVLTFRDGVLFVAEN--------PSTALHKVSELYDRLGFAAVGKYNEFENLR 67

Query: 155 DIVKQ 159
                
Sbjct: 68  RAGIV 72

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (139), Expect = 9e-11
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 4/107 (3%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
           T+++ + F+GGV+L ADS    GS +      ++  I+           AD Q + D V 
Sbjct: 1   TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60

Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
            ++    +          +  S    + Y      + L     +AG 
Sbjct: 61  YQLGFHSIEL-NEPPLVHTAASLFKEMCYRY---REDLMAGIIIAGW 103

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (117), Expect = 7e-08
 Identities = 17/61 (27%), Positives = 28/61 (45%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
           T+++ + F+GGV+L ADS    GS +      ++  I+           AD Q + D V 
Sbjct: 1   TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60

Query: 159 Q 159
            
Sbjct: 61  Y 61

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
            + +V   G          G G+      +  +      M+KEE +      + L   RD
Sbjct: 110 QVYSVPMGGMMVRQSFAIGGSGSSYIYGYV--DATYREGMTKEECLQFTANALALAMERD 167

Query: 61  ARSG 64
             SG
Sbjct: 168 GSSG 171

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.1 bits (137), Expect = 2e-10
 Identities = 21/112 (18%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
           T+++G+ FN GV++AAD+    G ++   +C ++ +I+           AD + +  ++ 
Sbjct: 1   TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60

Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
             I    L+      +   + S L  +  +       +     VAG+     
Sbjct: 61  SNIELHSLYTS----REPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGS 108

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (126), Expect = 6e-09
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
           T+++G+ FN GV++AAD+    G ++   +C ++ +I+           AD + +  ++ 
Sbjct: 1   TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60

Query: 159 QK 160
             
Sbjct: 61  SN 62

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
            L ++   G+      LS G G+  A+ +L    +++  ++KEEAI L    +      D
Sbjct: 109 HLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQD--LTKEEAIKLASDAIQAGIWND 166

Query: 61  ARSGAK 66
             SG+ 
Sbjct: 167 LGSGSN 172

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.3 bits (135), Expect = 3e-10
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 226
           G  V+ +     V +A D      S+   N   +I       +   G    D   LN++ 
Sbjct: 8   GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITG-LATDVTTLNEMF 66

Query: 227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
           + K     L  +   ++P++    ++  LY RR  F P ++   VAG+
Sbjct: 67  RYKTNLYKL-KEERAIEPETFTQLVSSSLYERR--FGPYFVGPVVAGI 111

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (110), Expect = 6e-07
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 98  GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV 157
           G  V+ +     V +A D      S+   N   +I       +   G    D   LN++ 
Sbjct: 8   GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITG-LATDVTTLNEMF 66

Query: 158 KQK 160
           + K
Sbjct: 67  RYK 69

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

 Score = 55.5 bits (133), Expect = 3e-10
 Identities = 13/95 (13%), Positives = 31/95 (32%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
           T++L +  NG  ++  D    +GS +   +  ++ ++ +  +L                 
Sbjct: 1   TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60

Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQF 262
           +  L +   N        +      RVL    +  
Sbjct: 61  EAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALL 95

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 17/129 (13%), Positives = 38/129 (29%), Gaps = 10/129 (7%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
           T++L +  NG  ++  D    +GS +   +  ++ ++ +  +L                 
Sbjct: 1   TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60

Query: 159 QKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQIN----------KFT 208
           +       G      V                +++   D   I  I+             
Sbjct: 61  EAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAA 120

Query: 209 ILGAGNDYA 217
            +G+G  YA
Sbjct: 121 AIGSGGPYA 129

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.2 bits (135), Expect = 4e-10
 Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 7/120 (5%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            G++ +G+  + GV LA +       +M  +   +I++I+           AD + L D 
Sbjct: 26  LGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDK 84

Query: 226 VKQKILDDDLHND------GFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
            + +  +     +             +L         +  +   P  +     G+    P
Sbjct: 85  ARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGP 144

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
            G++ +G+  + GV LA +       +M  +   +I++I+           AD + L D 
Sbjct: 26  LGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDK 84

Query: 157 VKQKI 161
            + + 
Sbjct: 85  ARVET 89

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.7 bits (133), Expect = 6e-10
 Identities = 22/109 (20%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            G ++L +      I+A+D+    G  +   D P+  ++   T++G    + D   L  I
Sbjct: 8   NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 67

Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
           ++   L    H++   +   ++ + L+ +LY+R  +F P ++   + G+
Sbjct: 68  IEA-RLKMYKHSNNKAMTTGAIAAMLSTILYSR--RFFPYYVYNIIGGL 113

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.5 bits (117), Expect = 7e-08
 Identities = 13/65 (20%), Positives = 30/65 (46%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
            G ++L +      I+A+D+    G  +   D P+  ++   T++G    + D   L  I
Sbjct: 8   NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 67

Query: 157 VKQKI 161
           ++ ++
Sbjct: 68  IEARL 72

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (133), Expect = 1e-09
 Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            GT  +G+     V+L  +               ++ +I+   +L      AD + L + 
Sbjct: 27  RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEK 86

Query: 226 VKQKILDDDLHNDGFVLKPKSLHSW-LTRVLYNRRSQFDPLWINAFVAGM 274
            + +     L  +  V            +  Y +     P  ++  +AG 
Sbjct: 87  ARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGF 136

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 10/63 (15%), Positives = 22/63 (34%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
            GT  +G+     V+L  +               ++ +I+   +L      AD + L + 
Sbjct: 27  RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEK 86

Query: 157 VKQ 159
            + 
Sbjct: 87  ARV 89

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 54.8 bits (131), Expect = 1e-09
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 227
           T+ +GLV   GV++A +     G+ +      +I QI     +       D Q+    + 
Sbjct: 1   TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQF-LARII 59

Query: 228 QKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
           +   +            +++ +  + +L + R  + P  +   + G+
Sbjct: 60  KIEANLYEIRRERKPTVRAIATLTSNLLNSYR--YFPYLVQLLIGGI 104

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQY 152
           T+ +GLV   GV++A +     G+ +      +I QI     +       D Q+
Sbjct: 1   TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQF 54

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 1   FLGTVDKLGTAYEDK-ILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVR 59
            + ++D +G A E+K I++ G G+  A  +L       P++  +EA+ L    +     R
Sbjct: 110 SIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDR--FTPEIGVDEAVELAVRAIYSAMKR 167

Query: 60  DARSG 64
           D+ SG
Sbjct: 168 DSASG 172

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.7 bits (131), Expect = 1e-09
 Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            G++ LG+ F  GV+L +D       ++  N   +I  I+ +         AD + L D 
Sbjct: 21  KGSTALGMKFANGVLLISDKK-VRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDF 79

Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279
            +     + +   G ++  ++L   +   +  Y +     P  ++   AG+    P
Sbjct: 80  ARISAQQEKV-TYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGP 134

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
            G++ LG+ F  GV+L +D       ++  N   +I  I+ +         AD + L D 
Sbjct: 21  KGSTALGMKFANGVLLISDKK-VRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDF 79

Query: 157 VKQ 159
            + 
Sbjct: 80  ARI 82

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.3 bits (130), Expect = 2e-09
 Identities = 14/109 (12%), Positives = 41/109 (37%), Gaps = 1/109 (0%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
              + +G++ + G++LAA+       + +     ++ ++N    +      AD + L + 
Sbjct: 30  HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINT 89

Query: 226 VKQKILDDDL-HNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAG 273
            +    +    +N+   ++         +  Y +     P  ++   AG
Sbjct: 90  ARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAG 138

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 9/63 (14%), Positives = 27/63 (42%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
              + +G++ + G++LAA+       + +     ++ ++N    +      AD + L + 
Sbjct: 30  HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINT 89

Query: 157 VKQ 159
            + 
Sbjct: 90  ARI 92

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
            L T +  G     K +S G  T  A  LL  + +    M  ++AI L    +       
Sbjct: 146 QLYTSNPSGNYTGWKAISVGANTSAAQTLL--QMDYKDDMKVDDAIELALKTLSKTTDSS 203

Query: 61  ARSG 64
           A + 
Sbjct: 204 ALTY 207

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.1 bits (127), Expect = 5e-09
 Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 1/110 (0%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
              + LG++ N GV+LAA+    +  +       +I ++N+          +D   L + 
Sbjct: 29  HAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNE 88

Query: 226 VKQKILDDDL-HNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGM 274
           ++       L + +    +         +  Y +     P  ++    G 
Sbjct: 89  LRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGW 138

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 12/63 (19%), Positives = 27/63 (42%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
              + LG++ N GV+LAA+    +  +       +I ++N+          +D   L + 
Sbjct: 29  HAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNE 88

Query: 157 VKQ 159
           ++ 
Sbjct: 89  LRL 91

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.4 bits (125), Expect = 1e-08
 Identities = 15/115 (13%), Positives = 40/115 (34%), Gaps = 8/115 (6%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            G++ +G+    GV+L  +       ++  +   +I++I++          AD + + + 
Sbjct: 25  LGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEH 83

Query: 226 VKQKI------LDDDLHNDGFVLKPKS-LHSWLTRVLYNRRSQFDPLWINAFVAG 273
            +          D+D++ +            +        R    P  +   +AG
Sbjct: 84  ARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAG 138

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 9/65 (13%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
            G++ +G+    GV+L  +       ++  +   +I++I++          AD + + + 
Sbjct: 25  LGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEH 83

Query: 157 VKQKI 161
            +   
Sbjct: 84  ARTAA 88

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 2/115 (1%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            G   +G+    GV+LA +       +       ++  I K   L       D++ L   
Sbjct: 30  GGAPSVGIKAANGVVLATEKKQKSI-LYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHR 88

Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR-SQFDPLWINAFVAGMQNGEP 279
            ++      L     +   + +    + +    +     P  ++  + G   G P
Sbjct: 89  ARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRP 143

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
            G   +G+    GV+LA +       +       ++  I K   L       D++ L   
Sbjct: 30  GGAPSVGIKAANGVVLATEKKQKSI-LYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHR 88

Query: 157 VKQKI 161
            ++  
Sbjct: 89  ARKLA 93

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 51.2 bits (122), Expect = 2e-08
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 2/112 (1%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            G + +G+    GVIL AD       ++  +   +I +I++          AD + L D 
Sbjct: 30  RGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDR 88

Query: 226 VKQKILDDDL-HNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN 276
            + +   + L ++    +K  +      +  Y +     P  ++  +AG+  
Sbjct: 89  ARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE 140

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
            G + +G+    GVIL AD       ++  +   +I +I++          AD + L D 
Sbjct: 30  RGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDR 88

Query: 157 VKQKI 161
            + + 
Sbjct: 89  ARIEA 93

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 13/116 (11%), Positives = 38/116 (32%), Gaps = 4/116 (3%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            GT+ +G+  N GV+ A +       ++      +I  +++           D ++L + 
Sbjct: 29  NGTTSIGIKCNDGVVFAVEKLITSK-LLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNR 87

Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNGEP 279
             ++            +   +    L + +  +   +   P  ++    G+     
Sbjct: 88  G-REEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGA 142

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
            GT+ +G+  N GV+ A +       ++      +I  +++           D ++L + 
Sbjct: 29  NGTTSIGIKCNDGVVFAVEKLITSK-LLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNR 87

Query: 157 VKQ 159
            ++
Sbjct: 88  GRE 90

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLL-RQETEKNPQMSKEEAIALIKTCMDLLYVR 59
            L  ++  G+ +  K  + G G   A   L +        +S  EA+      + L +  
Sbjct: 143 HLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHED 202

Query: 60  DARSGAK 66
           +     +
Sbjct: 203 NKEKDFE 209

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

 Score = 49.4 bits (117), Expect = 5e-08
 Identities = 16/130 (12%), Positives = 45/130 (34%), Gaps = 11/130 (8%)

Query: 99  TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVK 158
           T+++ +  NG V++  D     G+ +   +  ++ ++    +L          +    + 
Sbjct: 1   TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60

Query: 159 QKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-----------NKF 207
           ++   +  G  +   V          +     +M+   D    + I           ++ 
Sbjct: 61  ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQI 120

Query: 208 TILGAGNDYA 217
             +G+G +YA
Sbjct: 121 LAIGSGGNYA 130

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 14/100 (14%), Positives = 36/100 (36%), Gaps = 3/100 (3%)

Query: 168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIV 226
           T+++ +  NG V++  D     G+ +   +  ++ ++    +L G     AD   L ++ 
Sbjct: 1   TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60

Query: 227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLW 266
           ++K+              +    W T     +      + 
Sbjct: 61  ERKLEMH--QGHLLKSAVELAKDWRTDRALRKLEAMLIVA 98

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.7 bits (118), Expect = 9e-08
 Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 3/110 (2%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            G + LG+    GV++A +       +       ++  +             D++ L D 
Sbjct: 30  QGVTSLGIKATNGVVIATEKKSSSP-LAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDK 88

Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYN--RRSQFDPLWINAFVAG 273
            ++          G     K L S + +++    +     P  ++  +AG
Sbjct: 89  SRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAG 138

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
            G + LG+    GV++A +       +       ++  +             D++ L D 
Sbjct: 30  QGVTSLGIKATNGVVIATEKKSSSP-LAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDK 88

Query: 157 VKQ 159
            ++
Sbjct: 89  SRK 91

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (117), Expect = 1e-07
 Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 4/115 (3%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            G++ +GL      +L A                +I+ ++    +      AD + L + 
Sbjct: 28  QGSATVGLKSKTHAVLVALK---RAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNF 84

Query: 226 VKQKILDDDL-HNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP 279
           ++Q+ LD     +    +            +  +R    P  +   +AG  +  P
Sbjct: 85  MRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGP 139

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 6/65 (9%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIAL-IKTCMDLLYVR 59
            +         ++ + +S G  +  A   L +   +  + +  E +   ++   + L   
Sbjct: 140 HIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAE 199

Query: 60  DARSG 64
              + 
Sbjct: 200 QDLTT 204

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 16/110 (14%), Positives = 39/110 (35%), Gaps = 4/110 (3%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
             ++ +G+    GV+   +       +       R+  +++   +      AD + L DI
Sbjct: 32  NSSTAIGIRCKDGVVFGVEKL-VLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADI 90

Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAG 273
            +++  +    N G+ +  K L   +   +  Y   S   P   +  +  
Sbjct: 91  AREEASNFRS-NFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGS 139

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
             ++ +G+    GV+   +       +       R+  +++   +      AD + L DI
Sbjct: 32  NSSTAIGIRCKDGVVFGVEKL-VLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADI 90

Query: 157 VKQKI 161
            +++ 
Sbjct: 91  AREEA 95

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCM 53
            L  +D  G +Y     + G     A      E  +  +M+  + +  +   +
Sbjct: 147 QLYMIDPSGVSYGYWGCAIGKARQAAKTE--IEKLQMKEMTCRDIVKEVAKII 197

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

 Score = 46.7 bits (110), Expect = 5e-07
 Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 5/113 (4%)

Query: 167 GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY--ADFQYLND 224
            T++  +   G   ++ D    +G  +      R ++      + AG     AD   L +
Sbjct: 5   ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64

Query: 225 IVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNG 277
             + K    + +N         L          R+ +   + +N     + +G
Sbjct: 65  KFEAK---LEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSG 114

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.4 bits (104), Expect = 3e-06
 Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 11/131 (8%)

Query: 98  GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY--ADFQYLND 155
            T++  +   G   ++ D    +G  +      R ++      + AG     AD   L +
Sbjct: 5   ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64

Query: 156 IVKQKITPLTTGTSVLGLVFNGGVILA---------ADSAGYYGSMMRFNDCPRIMQINK 206
             + K+           +                           ++       I   + 
Sbjct: 65  KFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDG 124

Query: 207 FTILGAGNDYA 217
              +G+G +YA
Sbjct: 125 ILAIGSGGNYA 135

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 12/110 (10%), Positives = 37/110 (33%), Gaps = 4/110 (3%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            G++ +G+     V+L  +       +       +I  ++    +      AD + + + 
Sbjct: 27  KGSTAVGVRGRDIVVLGVEKK-SVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINR 85

Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAG 273
             +             +  + +  ++  +   Y + +   P  I+A + G
Sbjct: 86  -ARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVG 134

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 7/63 (11%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
            G++ +G+     V+L  +       +       +I  ++    +      AD + + + 
Sbjct: 27  KGSTAVGVRGRDIVVLGVEKK-SVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINR 85

Query: 157 VKQ 159
            + 
Sbjct: 86  ARV 88

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 15/115 (13%), Positives = 39/115 (33%), Gaps = 4/115 (3%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            G+  +GL  N   +L A       +    +   +I++ ++   L       D + L++ 
Sbjct: 30  QGSVTVGLRSNTHAVLVALK---RNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNY 86

Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRV-LYNRRSQFDPLWINAFVAGMQNGEP 279
           ++Q+     L  +  +   ++ H    +     +     P  +   + G      
Sbjct: 87  LRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGA 141

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.5 bits (97), Expect = 5e-05
 Identities = 10/110 (9%), Positives = 33/110 (30%), Gaps = 4/110 (3%)

Query: 166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 225
            G + + +      ++          ++  +    + +I +          AD +     
Sbjct: 34  GGLTSVAVRGKDCAVIVTQKK-VPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQR 92

Query: 226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAG 273
             +    +  +  G+ +    L   +  +   Y + ++  PL     + G
Sbjct: 93  A-RYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIG 141

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 10/64 (15%), Positives = 22/64 (34%)

Query: 1   FLGTVDKLGTAYEDKILSFGFGTHIAVPLLRQETEKNPQMSKEEAIALIKTCMDLLYVRD 60
            +   D  G     K  + G     +   L ++ +K    + E+ +    TC+  +   D
Sbjct: 149 QVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID 208

Query: 61  ARSG 64
            +  
Sbjct: 209 FKPS 212

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 10/120 (8%), Positives = 28/120 (23%), Gaps = 9/120 (7%)

Query: 97  TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI 156
           T  + L +      ++ +        ++       I  I++   +       D +     
Sbjct: 29  TNINSLAVRGKDCTVVISQKK-VPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALR 87

Query: 157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY 216
            K +                G  +     A    ++ +       M+     +     D 
Sbjct: 88  AKAEAAEF--------RYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDE 139

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d1ryph_	205	Proteasome beta subunit (catalytic) {Baker's yeast	99.91
d1ryp1_	222	Proteasome beta subunit (catalytic) {Baker's yeast	99.9
d1rypl_	212	Proteasome beta subunit (catalytic) {Baker's yeast	99.9
d1ryp2_	233	Proteasome beta subunit (catalytic) {Baker's yeast	99.9
d1iru2_	217	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.9
d1irul_	201	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.9
d1rypi_	222	Proteasome beta subunit (catalytic) {Baker's yeast	99.9
d1irui_	220	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.89
d1rypc_	244	Proteasome alpha subunit (non-catalytic) {Baker's	99.89
d1yarh1	203	Proteasome beta subunit (catalytic) {Archaeon Ther	99.88
d1iruj_	204	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.88
d1rypk_	198	Proteasome beta subunit (catalytic) {Baker's yeast	99.88
d1iruh_	202	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.88
d1iruc_	250	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.88
d1yara1	221	Proteasome alpha subunit (non-catalytic) {Archaeon	99.87
d1iru1_	213	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.87
d1j2qh_	202	Proteasome beta subunit (catalytic) {Archaeon Arch	99.87
d1j2pa_	243	Proteasome alpha subunit (non-catalytic) {Archaeon	99.87
d1rypb_	250	Proteasome alpha subunit (non-catalytic) {Baker's	99.86
d1rypj_	204	Proteasome beta subunit (catalytic) {Baker's yeast	99.86
d1rype_	242	Proteasome alpha subunit (non-catalytic) {Baker's	99.86
d1q5qh_	224	Proteasome beta subunit (catalytic) {Rhodococcus e	99.85
d1irue_	234	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.85
d1rypg_	244	Proteasome alpha subunit (non-catalytic) {Baker's	99.85
d1irub_	233	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.85
d1irug_	245	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.85
d1q5qa_	227	Proteasome alpha subunit (non-catalytic) {Rhodococ	99.84
d1iruk_	199	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.84
d1rypd_	241	Proteasome alpha subunit (non-catalytic) {Baker's	99.83
d1irua_	244	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.83
d1rypa_	243	Proteasome alpha subunit (non-catalytic) {Baker's	99.82
d1iruf_	238	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.82
d1irud_	243	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.82
d1ryp2_	233	Proteasome beta subunit (catalytic) {Baker's yeast	99.79
d2z3ba1	180	HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14	99.79
d1rypf_	233	Proteasome alpha subunit (non-catalytic) {Baker's	99.79
d1irul_	201	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.78
d1iru2_	217	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.78
d1m4ya_	171	HslV (ClpQ) protease {Thermotoga maritima [TaxId:	99.77
d1iruj_	204	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.77
d1yara1	221	Proteasome alpha subunit (non-catalytic) {Archaeon	99.76
d1rypk_	198	Proteasome beta subunit (catalytic) {Baker's yeast	99.75
d1irug_	245	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.75
d1j2qh_	202	Proteasome beta subunit (catalytic) {Archaeon Arch	99.74
d1iruc_	250	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.74
d1irui_	220	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.74
d1rypc_	244	Proteasome alpha subunit (non-catalytic) {Baker's	99.74
d1rypd_	241	Proteasome alpha subunit (non-catalytic) {Baker's	99.74
d1g3ka_	173	HslV (ClpQ) protease {Haemophilus influenzae [TaxI	99.73
d1rypg_	244	Proteasome alpha subunit (non-catalytic) {Baker's	99.73
d1yarh1	203	Proteasome beta subunit (catalytic) {Archaeon Ther	99.73
d1ryph_	205	Proteasome beta subunit (catalytic) {Baker's yeast	99.73
d1irud_	243	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.73
d1iruh_	202	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.73
d1irue_	234	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.72
d1iruf_	238	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.71
d1rypb_	250	Proteasome alpha subunit (non-catalytic) {Baker's	99.71
d1irua_	244	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.71
d1rypf_	233	Proteasome alpha subunit (non-catalytic) {Baker's	99.7
d1rype_	242	Proteasome alpha subunit (non-catalytic) {Baker's	99.7
d1j2pa_	243	Proteasome alpha subunit (non-catalytic) {Archaeon	99.7
d1rypl_	212	Proteasome beta subunit (catalytic) {Baker's yeast	99.69
d1ryp1_	222	Proteasome beta subunit (catalytic) {Baker's yeast	99.69
d1rypi_	222	Proteasome beta subunit (catalytic) {Baker's yeast	99.69
d1rypa_	243	Proteasome alpha subunit (non-catalytic) {Baker's	99.69
d1irub_	233	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.68
d1rypj_	204	Proteasome beta subunit (catalytic) {Baker's yeast	99.68
d1iru1_	213	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.67
d1q5qa_	227	Proteasome alpha subunit (non-catalytic) {Rhodococ	99.64
d1iruk_	199	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.61
d1q5qh_	224	Proteasome beta subunit (catalytic) {Rhodococcus e	99.55
d1g3ka_	173	HslV (ClpQ) protease {Haemophilus influenzae [TaxI	98.93
d2z3ba1	180	HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14	98.86
d1m4ya_	171	HslV (ClpQ) protease {Thermotoga maritima [TaxId:	98.85

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.5e-25  Score=189.55  Aligned_cols=148  Identities=18%  Similarity=0.209  Sum_probs=130.3

Q ss_pred             CccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc------------
Q psy9489          94 PLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI------------  161 (279)
Q Consensus        94 ~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~------------  161 (279)
                      ++++|||+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.+.+.++.+.            
T Consensus         5 ~v~~GtTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   84 (205)
T d1ryph_           5 EVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPST   84 (205)
T ss_dssp             CCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCH
T ss_pred             cccCcceEEEEEECCEEEEEECCccccCceeeccccceEEEccCceEEeeccchhHHHHHHHHHHHHHHHHHHHcCCccH
Confidence            57899999999999999999999999999999999999999999999999999999999999988511            


Q ss_pred             ---------------ccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHH
Q psy9489         162 ---------------TPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI  225 (279)
Q Consensus       162 ---------------~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~  225 (279)
                                     .|...+..+.|++.+ ++.|+..|+.|++              ...++.+.|+|+    .++..+
T Consensus        85 ~~~~~~~~~~~~~~~~p~~~~~lvaG~d~~~~p~Ly~~d~~G~~--------------~~~~~~a~G~g~----~~~~~~  146 (205)
T d1ryph_          85 ETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSV--------------HKLPYAIAGSGS----TFIYGY  146 (205)
T ss_dssp             HHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCC--------------EEESEEEESGGG----GGGHHH
T ss_pred             HHHHHHHHHHHHhCccCceEEEEEEeecCCCCcEEEEECCCCcE--------------EecCeEEeecCc----HHHHHH
Confidence                           122222333488754 5789999999987              667899999999    999999


Q ss_pred             HHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       226 l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      |++.|+++|+.+|+.++..+++.+++.++.++..
T Consensus       147 Le~~~~~~ms~~ea~~l~~~al~~a~~rD~~sg~  180 (205)
T d1ryph_         147 CDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGG  180 (205)
T ss_dssp             HHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred             HHhhhhcccCHHHHHHHHHHHHHHHHHhcCcCCC
Confidence            9999999999999999999999999999988754

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.4e-24  Score=186.48  Aligned_cols=151  Identities=18%  Similarity=0.188  Sum_probs=126.2

Q ss_pred             cCcCcc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          91 FSTPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        91 ~~~~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      +|+|+. ||||+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.+.+.++...        
T Consensus         1 ~~~py~~nG~Tivgi~~~dgVviaaD~r~s~~~~i~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   80 (222)
T d1ryp1_           1 QFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHN   80 (222)
T ss_dssp             CCCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEECSTTCEEEEEESHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCccCCCcEEEEEEECCEEEEEECCCcccCCEeccCCcceEEEecCCEEEEeccChHHHHHHHHHHHHHhhhhhhhcC
Confidence            377866 99999999999999999999999999999999999999999999999999999999999888511        


Q ss_pred             ----------------------ccccceeeEEEEEeCC-cEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhh
Q psy9489         162 ----------------------TPLTTGTSVLGLVFNG-GVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYAD  218 (279)
Q Consensus       162 ----------------------~pi~~g~tvlgi~~~~-gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD  218 (279)
                                            .|......+.|++.++ +.|+..|+.|++              ...++.+.|+|+   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~Ly~~D~~G~~--------------~~~~~~a~G~g~---  143 (222)
T d1ryp1_          81 DKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSY--------------EREQCRAGGAAA---  143 (222)
T ss_dssp             TCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCE--------------EEESEEEEETTH---
T ss_pred             CCCCcHHHHHHHHHHHHHhhhhhhheeeeeEEEEeCCCCeEEEEECCCcEE--------------EEeceEEEcccH---
Confidence                                  1222223344776555 578899999987              677899999999   


Q ss_pred             HHHHHHHHHhhcc-----------------cccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         219 FQYLNDIVKQKIL-----------------DDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       219 ~~~l~~~l~~~~~-----------------~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                       +.+.++|+++|+                 ++++.+|+.++..+++..++.++.++..
T Consensus       144 -~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~lt~~ea~~l~~~al~~a~~rd~~sg~  200 (222)
T d1ryp1_         144 -SLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGD  200 (222)
T ss_dssp             -HHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred             -HHHHHHHHHhhccccccCcccchhhhcccccccHHHHHHHHHHHHHHHHHhcccCCC
Confidence             999999999987                 4677788888888888888888877754

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=2.5e-24  Score=184.10  Aligned_cols=143  Identities=22%  Similarity=0.292  Sum_probs=126.2

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc------------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK------------------  160 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~------------------  160 (279)
                      ||+|||+|+||||||+|+|.++|.++.+++++||++|+++++++++|..+|+|.+.+.++..                  
T Consensus         1 TT~iai~~kdgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (212)
T d1rypl_           1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS   80 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEeccchHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999998841                  


Q ss_pred             -----------cccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHh
Q psy9489         161 -----------ITPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQ  228 (279)
Q Consensus       161 -----------~~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~  228 (279)
                                 ..|...+..++|...+ ++.|+..|+.|++              ...++++.|+|+    +.+..+|++
T Consensus        81 ~~ls~~~~~~~~~p~~~~~~l~G~~~~~g~~Ly~id~~G~~--------------~~~~~~a~G~gs----~~~~~~Le~  142 (212)
T d1rypl_          81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTR--------------LKGDIFCVGSGQ----TFAYGVLDS  142 (212)
T ss_dssp             HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCE--------------EECSEEEESTTH----HHHHHHHHH
T ss_pred             HHHHHHHHHhccCCcceEeeeeEeecCCCCEEEEECCCceE--------------EecceEEEccCc----ccchhHHHH
Confidence                       1122234455577665 5689999999987              677899999999    999999999


Q ss_pred             hcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         229 KILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       229 ~~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      +|+++|+.+|+..+..+++..++.|+.++..
T Consensus       143 ~~~~~mt~~ea~~l~~~al~~~~~rd~~sg~  173 (212)
T d1rypl_         143 NYKWDLSVEDALYLGKRSILAAAHRDAYSGG  173 (212)
T ss_dssp             HCCTTCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            9999999999999999999999999888754

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.6e-24  Score=187.77  Aligned_cols=150  Identities=25%  Similarity=0.391  Sum_probs=127.7

Q ss_pred             CcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc----------
Q psy9489          92 STPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI----------  161 (279)
Q Consensus        92 ~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~----------  161 (279)
                      .+|+.+|||+|||+++||||||||+|.+.|+++.+++.+||++|++|++++++|..+|++.+.+.++...          
T Consensus         2 ~~~i~tGtTivgi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~   81 (233)
T d1ryp2_           2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA   81 (233)
T ss_dssp             CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred             CCCccccceEEEEEECCEEEEEECCCcccCCeeecCCcceEEEeCCCEEEEeccCchHHHHHHHHHHHHHHHHHHhhCCC
Confidence            5799999999999999999999999999999999999999999999999999999999999999887410          


Q ss_pred             --------------------------ccccceeeEEEEEeCC-cEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489         162 --------------------------TPLTTGTSVLGLVFNG-GVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN  214 (279)
Q Consensus       162 --------------------------~pi~~g~tvlgi~~~~-gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG  214 (279)
                                                .|...+..+.|++.++ +.++..|+.|++              ...++.+.|+|
T Consensus        82 ~~~~~~~~~~~a~~l~~~~y~~~~~~~P~~~~~liaG~d~~g~~~ly~~d~~G~~--------------~~~~~~a~G~g  147 (233)
T d1ryp2_          82 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVT--------------YSSPTLATGFG  147 (233)
T ss_dssp             TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCE--------------ECCSEEECTHH
T ss_pred             CCCcccCHHHHHHHHHHHHHhhccccCCceeEEEEEEEcCCCCeEEEEEcCCCcE--------------EeeeeEEecCc
Confidence                                      1111122333776555 456788999987              67789999999


Q ss_pred             ChhhHHHHHHHHHhhcc-----cccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         215 DYADFQYLNDIVKQKIL-----DDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       215 ~~aD~~~l~~~l~~~~~-----~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      +    +++..+|++.|+     ++|+.+|+.++..+++...+.|+.++..
T Consensus       148 ~----~~a~~~Le~~~~~~~~~~~ms~eeA~~l~~~al~~~~~rD~~sg~  193 (233)
T d1ryp2_         148 A----HMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSR  193 (233)
T ss_dssp             H----HHHHHHHTTTCCSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred             c----HHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHHHhcccCCC
Confidence            9    999999999997     6788999999999999999999988754

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.6e-24  Score=185.78  Aligned_cols=150  Identities=29%  Similarity=0.423  Sum_probs=127.9

Q ss_pred             CcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------cc
Q psy9489          92 STPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK---------IT  162 (279)
Q Consensus        92 ~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~---------~~  162 (279)
                      .+|+.+|||+|||+++||||||+|+|.+.|+++.+++.+||++|+++++++.+|..+|++.+.+.++++         ..
T Consensus         2 ~~~~~~GtTivgi~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (217)
T d1iru2_           2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH   81 (217)
T ss_dssp             CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCCcCcccEEEEEEECCEEEEEEcCCcccCCeeecCCcceEEEeCCCeEEEeccccHHHHHHHHHHHHHHHHhhhhcCCC
Confidence            578999999999999999999999999999999999999999999999999999999999999887641         01


Q ss_pred             cc---------------------ccee-eEE-EEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhH
Q psy9489         163 PL---------------------TTGT-SVL-GLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADF  219 (279)
Q Consensus       163 pi---------------------~~g~-tvl-gi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~  219 (279)
                      ++                     ..+. .++ |.+..++.++..|+.|++              ...++.+.|+|+    
T Consensus        82 ~~~v~~~a~~l~~~~y~~~~~~~p~~~~~li~G~d~~~~~l~~~D~~G~~--------------~~~~~~a~G~g~----  143 (217)
T d1iru2_          82 SYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVA--------------YEAPSLATGYGA----  143 (217)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCE--------------EECSEEECTTHH----
T ss_pred             CCCHHHHHHHHHHHHHHhccccCcccceEEEEEEcCCCcEEEEEecCcee--------------EeeeEEeccCcH----
Confidence            11                     1222 233 666556788899999987              677889999999    


Q ss_pred             HHHHHHHHhhcc--cccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         220 QYLNDIVKQKIL--DDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       220 ~~l~~~l~~~~~--~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      +++...|++.++  ++|+.+|+.++..+++..++.|+.++..
T Consensus       144 ~~a~~~Le~~~~~~~~lt~~ea~~l~~~al~~a~~rd~~sg~  185 (217)
T d1iru2_         144 YLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYN  185 (217)
T ss_dssp             HHTHHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhcCcCCC
Confidence            999999999765  6899999999999999999999988754

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=3.8e-24  Score=181.38  Aligned_cols=143  Identities=21%  Similarity=0.274  Sum_probs=126.2

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------------  161 (279)
                      ||+|||+++||||||||+|.+.|.++.+++.+||++|+++++++.+|..+|++.+.+.++.+.                 
T Consensus         1 TT~igi~~~dgVvlaaD~~~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (201)
T d1irul_           1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS   80 (201)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCccccCCEeecCCcccEEEeCCcEEEEEcCccchHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Confidence            799999999999999999999999999999999999999999999999999999999887411                 


Q ss_pred             ------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhh
Q psy9489         162 ------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK  229 (279)
Q Consensus       162 ------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~  229 (279)
                                  .|+.....+.|++.+++.++..|+.|++              ...++++.|+|+    +++...|++.
T Consensus        81 ~~l~~~~~~~~~~p~~~~~lvaG~d~~~~~l~~~d~~G~~--------------~~~~~~a~G~g~----~~~~~~Le~~  142 (201)
T d1irul_          81 KLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNR--------------ISGATFSVGSGS----VYAYGVMDRG  142 (201)
T ss_dssp             HHHHHHHHTTTTSCCCBEEEEEEECSSSEEEEEEESSSCE--------------EECSEEEESTTH----HHHHHHHHTT
T ss_pred             HHHHHHhhhccCCCceEEEEEEEEecCCceEEEEccCceE--------------EEeeeEEecCch----HHHHHHHHhh
Confidence                        2332333444787778999999999977              667889999999    9999999999


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       230 ~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      |+++|+.+|+..+..++|..++.++..+..
T Consensus       143 ~~~~ms~eea~~l~~~~l~~~~~~d~~sg~  172 (201)
T d1irul_         143 YSYDLEVEQAYDLARRAIYQATYRDAYSGG  172 (201)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999999998877654

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.9e-24  Score=184.26  Aligned_cols=143  Identities=15%  Similarity=0.255  Sum_probs=125.6

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------ccc------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TPL------  164 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~pi------  164 (279)
                      ||+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..+|+|.+.+.++.+.        .++      
T Consensus         1 TTiVgik~~dGVviaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~~a   80 (222)
T d1rypi_           1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL   80 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCceeecCCcccEEEEcCCEEEEecccchHHHHHHHHHHHHHHHhhhhhCCCCcHHHHH
Confidence            799999999999999999999999999999999999999999999999999999999988511        010      


Q ss_pred             ------------cceeeE-E-EEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhc
Q psy9489         165 ------------TTGTSV-L-GLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI  230 (279)
Q Consensus       165 ------------~~g~tv-l-gi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~  230 (279)
                                  ..+..+ + |++.+++.|+..|+.|++              ...++++.|+|+    +++..+|+++|
T Consensus        81 ~~l~~~~~~~~~p~~~~~l~aG~d~~g~~Ly~id~~G~~--------------~~~~~~a~Gsg~----~~a~~~Le~~~  142 (222)
T d1rypi_          81 QMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGST--------------DVGYYLSLGSGS----LAAMAVLESHW  142 (222)
T ss_dssp             HHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCE--------------EECSEEEESTTH----HHHHHHHHHHC
T ss_pred             HHHHHHHHhhhhccceeEEEEEEcCCCcEEEEEecCcce--------------EEeeEEEECCCc----HHHHHHHHhhc
Confidence                        122333 2 676667889999999987              677899999999    99999999999


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         231 LDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       231 ~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      +++|+++|+.++..+++..++.++.++..
T Consensus       143 k~~ms~eea~~l~~~al~~a~~~D~~sg~  171 (222)
T d1rypi_         143 KQDLTKEEAIKLASDAIQAGIWNDLGSGS  171 (222)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHCTTCCS
T ss_pred             cCCCCHHHHHHHHHHHHHHHhcccCCCCC
Confidence            99999999999999999999999988754

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=9.9e-24  Score=181.29  Aligned_cols=143  Identities=14%  Similarity=0.167  Sum_probs=125.9

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------------  161 (279)
                      ||+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|+|.+.+.++.+.                 
T Consensus         1 TTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (220)
T d1irui_           1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN   80 (220)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCEeecCCcccEEEecCcEEEEEccccHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            799999999999999999999999999999999999999999999999999999999887511                 


Q ss_pred             -----------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhc
Q psy9489         162 -----------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI  230 (279)
Q Consensus       162 -----------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~  230 (279)
                                 .|...+..+.|++.+++.++..|+.|++              ...++.+.|+|+    .++.++|++.|
T Consensus        81 ~~l~~~~y~~~~p~~~~~ivaG~D~~g~~L~~id~~G~~--------------~~~~~~a~Gsgs----~~a~~~L~~~~  142 (220)
T d1irui_          81 RMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGST--------------DKLPYVTMGSGS----LAAMAVFEDKF  142 (220)
T ss_dssp             HHHHHHHHHTTTCSCEEEEEEEECSSCEEEEEECTTSCE--------------EECSEEEESTTH----HHHHHHHHHSC
T ss_pred             HHHHhhhhhcccccceeEEEEEEeCCCcEEEEEeCCCcE--------------EEeeEEEEcccc----HHHHHHHHHhc
Confidence                       1211222333777778899999999987              667899999999    99999999999


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         231 LDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       231 ~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      +++++.+|+.++..+++...+.|+.++..
T Consensus       143 ~~~~s~~ea~~l~~~al~~~~~~D~~sg~  171 (220)
T d1irui_         143 RPDMEEEEAKNLVSEAIAAGIFNDLGSGS  171 (220)
T ss_dssp             CTTCCHHHHHTHHHHHHHHHHHHCTTCCS
T ss_pred             ccCCCHHHHHHHHHHHHHHhhccCCCCCC
Confidence            99999999999999999999999998764

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=4.5e-24  Score=186.30  Aligned_cols=150  Identities=15%  Similarity=0.170  Sum_probs=128.3

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK---------  160 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~---------  160 (279)
                      .+++++++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|+++|++.+.+.++..         
T Consensus        23 ya~~ai~~G~T~vgi~~~dgVvlaad~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~  102 (244)
T d1rypc_          23 YALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYN  102 (244)
T ss_dssp             HHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhcCCCEEEEEeCCEEEEEEeCCccCCCcccCCccceEEEcCCCeEEEEecccCcHHHHHHHHHHHHHHHHHHhC
Confidence            45668899999999999999999999999999999999999999999999999999999999999988841         


Q ss_pred             ------------------------cccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489         161 ------------------------ITPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND  215 (279)
Q Consensus       161 ------------------------~~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~  215 (279)
                                              ++|......+.|++.+ ++.|+..|+.|++              ...++++.|+|+
T Consensus       103 ~~~~~~~~~~~l~~~~~~~~~~~~~rP~~~~~ll~G~d~~~gp~Ly~id~~Gs~--------------~~~~~~a~G~g~  168 (244)
T d1rypc_         103 EDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNY--------------TGWKAISVGANT  168 (244)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCE--------------EEBSEEEESTTH
T ss_pred             CCCCHHHHHHHHHHHHhhhhhccccCccceeEEEEEEecCCCceEEEecCCCcE--------------eeeeeeeccchh
Confidence                                    1122223344488755 5789999999987              677899999999


Q ss_pred             hhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhh
Q psy9489         216 YADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYN  257 (279)
Q Consensus       216 ~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys  257 (279)
                          +.+..+|++.|+++|+++|+..+..++|..++.++..+
T Consensus       169 ----~~a~~~Le~~~~~~ms~eeai~l~~~al~~a~~~d~~~  206 (244)
T d1rypc_         169 ----SAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALT  206 (244)
T ss_dssp             ----HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCC
T ss_pred             ----HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence                99999999999999999998888888888887766554

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=2.2e-23  Score=176.83  Aligned_cols=142  Identities=13%  Similarity=0.224  Sum_probs=122.7

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------ccc------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------TPL------  164 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------~pi------  164 (279)
                      ||+|||+++||||||+|+|.+.|+++.+++.+||++|++++++++||..+|+|.+.+.++...        .++      
T Consensus         1 TT~igi~~kdgVvia~D~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (203)
T d1yarh1           1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVA   80 (203)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEECCEEEEEECCCcccCCEeecCCcccEEEecCCeeeecCCCcchHHHHHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            799999999999999999999999999999999999999999999999999999999887411        111      


Q ss_pred             -------------cceee-EE-EEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhh
Q psy9489         165 -------------TTGTS-VL-GLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK  229 (279)
Q Consensus       165 -------------~~g~t-vl-gi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~  229 (279)
                                   ..+.+ ++ |++ +++.++.+|+.|++              .+.++.+.|+|+    +.+...|+++
T Consensus        81 ~~l~~~~~~~~~~p~~~~~lvaG~d-~~p~l~~~d~~G~~--------------~~~~~~a~G~g~----~~~~~~L~~~  141 (203)
T d1yarh1          81 TLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGS--------------VEDIYASTGSGS----PFVYGVLESQ  141 (203)
T ss_dssp             HHHHHHHHHTTTSCCCEEEEEEEES-SSEEEEEECTTCCE--------------EEESEEEESTTH----HHHHHHHHHH
T ss_pred             HHHHHHHHhhccCCccceeEEEEEc-CCCeeEecCCccce--------------ecccccccCCCc----HHHHHHHHHh
Confidence                         12233 33 554 56899999999987              677899999999    9999999999


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       230 ~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      |+++|+.+|+.++..+++.....++.++..
T Consensus       142 ~~~~~s~eea~~l~~~~l~~~~~~d~~~~~  171 (203)
T d1yarh1         142 YSEKMTVDEGVDLVIRAISAAKQRDSASGG  171 (203)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHCTTCCS
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            999999999999999999999998877653

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=2.5e-23  Score=176.67  Aligned_cols=146  Identities=14%  Similarity=0.109  Sum_probs=124.0

Q ss_pred             CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------------
Q psy9489          97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI---------------  161 (279)
Q Consensus        97 ~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~---------------  161 (279)
                      +|||+|||+++||||||||+|.+.+.++.+++.+||++|+++++++.+|..+|+|.+.+.++...               
T Consensus         6 nG~Tvigi~~~dgVvlaaD~r~s~g~~~~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~   85 (204)
T d1iruj_           6 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYT   85 (204)
T ss_dssp             SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHH
T ss_pred             CCceEEEEEECCEEEEEECCCcccCCeeEcCcccEEEEeCCCeEEEeccCchHHHHHHHHHHHhhhhhhhhcccccchHH
Confidence            89999999999999999999999999999999999999999999999999999999999988511               


Q ss_pred             --------------ccccceeeEEEEEeCC--cEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHH
Q psy9489         162 --------------TPLTTGTSVLGLVFNG--GVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI  225 (279)
Q Consensus       162 --------------~pi~~g~tvlgi~~~~--gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~  225 (279)
                                    .|+.....+.|++-++  +.++..|+.+++             .....++++|+|+    +++..+
T Consensus        86 ~a~~l~~~~~~~~~~p~~~~~lvaG~D~~~~~~~~~~~d~~g~~-------------~~~~~~~~~G~g~----~~~~~~  148 (204)
T d1iruj_          86 LMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCP-------------MVTDDFVVSGTCA----EQMYGM  148 (204)
T ss_dssp             HHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCE-------------EECSSEEEEETTH----HHHHHH
T ss_pred             HHHHHHHHHHHhhhccceeEEEEEEEcCCCCceEEEEecCCCce-------------eeecceEEechhH----HHHHHH
Confidence                          1333334444776443  456778888764             1456689999999    999999


Q ss_pred             HHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       226 l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      |++.|+++|+.+|+.++..+++..+..|+.++..
T Consensus       149 l~~~~~~~ms~~ea~~l~~~al~~a~~rd~~sg~  182 (204)
T d1iruj_         149 CESLWEPNMDPDHLFETISQAMLNAVDRDAVSGM  182 (204)
T ss_dssp             HHHHCCSSCCHHHHHHHHHHHHHHHGGGBTTSCS
T ss_pred             HHhccccCCCHHHHHHHHHHHHHHHHhhcccCCC
Confidence            9999999999999999999999999999888754

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.7e-23  Score=176.88  Aligned_cols=143  Identities=14%  Similarity=0.131  Sum_probs=124.4

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc------------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK------------------  160 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~------------------  160 (279)
                      +|+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++++.+.++..                  
T Consensus         2 ~tiigi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (198)
T d1rypk_           2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS   81 (198)
T ss_dssp             CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             eEEEEEEECCEEEEEEcCCcccCCEeecCccceEEEecCCEEEEecCCcccHHHHHHHHHHHHHHHHHHhCCCcchHHHH
Confidence            69999999999999999999999999999999999999999999999999999999988851                  


Q ss_pred             -------------cccccceeeEEEEEeC--CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHH
Q psy9489         161 -------------ITPLTTGTSVLGLVFN--GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDI  225 (279)
Q Consensus       161 -------------~~pi~~g~tvlgi~~~--~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~  225 (279)
                                   ..|...+..+.|++.+  ++.|+..|+.|++              ...++.+.|+|+    .++..+
T Consensus        82 ~~i~~~~~~~~~~~~P~~~~~liaG~D~~~~~p~L~~id~~G~~--------------~~~~~~a~G~gs----~~~~~~  143 (198)
T d1rypk_          82 SFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTK--------------VELPYGAHGYSG----FYTFSL  143 (198)
T ss_dssp             HHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCE--------------EECSEEECTTHH----HHHHHH
T ss_pred             HHHHHHHHHHHhcccccceEEEEEEEecCCCceEEEEecccccE--------------EecceEEEeccc----hhhHHH
Confidence                         1233233334478753  5689999999987              667889999999    999999


Q ss_pred             HHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         226 VKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       226 l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      |++.|+++++++|+.++..+++..++.++.++..
T Consensus       144 Le~~~~~~~~~eea~~l~~~~l~~~~~~d~~s~~  177 (198)
T d1rypk_         144 LDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFK  177 (198)
T ss_dssp             HHHHCCTTCCHHHHHHHHHHHHHHHHHHCSBCCC
T ss_pred             HHhcccccCCHHHHHHHHHHHHHHHHHhcCcCCC
Confidence            9999999999999999999999999999887754

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=2.6e-23  Score=176.29  Aligned_cols=143  Identities=20%  Similarity=0.283  Sum_probs=124.7

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------------  161 (279)
                      ||+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..+|++.+.+.++...                 
T Consensus         1 TTivai~~~dgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (202)
T d1iruh_           1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA   80 (202)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCccccCCeeecCCcceEEEcCCcEEEEeccchHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            799999999999999999999999999999999999999999999999999999999888511                 


Q ss_pred             -----------ccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhh
Q psy9489         162 -----------TPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK  229 (279)
Q Consensus       162 -----------~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~  229 (279)
                                 .|......+.|++.+ ++.++..|+.|++              ...++.+.|+|+    .++..+|++.
T Consensus        81 ~~l~~~l~~~~~p~~~~~lvaG~d~~~~~~l~~~d~~g~~--------------~~~~~~a~G~g~----~~a~~~L~~~  142 (202)
T d1iruh_          81 SLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMM--------------VRQSFAIGGSGS----SYIYGYVDAT  142 (202)
T ss_dssp             HHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCC--------------EECSEEEESGGG----GGGHHHHHHH
T ss_pred             HHHHHHHHhhccceeEEEEEEEeecCCCcEEEEECCCCce--------------eecceeEEeCCH----HHHHHHHHHh
Confidence                       222222334477754 5678888998877              667899999999    9999999999


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         230 ILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       230 ~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      |+++|+.+|+.++..+++..++.++.++..
T Consensus       143 ~~~~~~~~ea~~l~~~al~~a~~rD~~sg~  172 (202)
T d1iruh_         143 YREGMTKEECLQFTANALALAMERDGSSGG  172 (202)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHBTTCCS
T ss_pred             hccCCcHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            999999999999999999999999998854

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=9.2e-24  Score=185.01  Aligned_cols=149  Identities=16%  Similarity=0.139  Sum_probs=125.0

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK---------  160 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~---------  160 (279)
                      ++++++++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.+++.++..         
T Consensus        22 yA~kav~~G~tvvgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~  101 (250)
T d1iruc_          22 YAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQ  101 (250)
T ss_dssp             HHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhcCCcEEEEEeCCEEEEEEeCccccCCcccCcccceEEECCCcEEEEeecccchHHHHHHHHHHHHHHHHHHcC
Confidence            45678999999999999999999999999999999999999999999999999999999999999998851         


Q ss_pred             ------------------------cccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489         161 ------------------------ITPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND  215 (279)
Q Consensus       161 ------------------------~~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~  215 (279)
                                              .+|+..+..+.|++.+ ++.|+..|+.|++              ...++.+.|+|+
T Consensus       102 ~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~li~G~D~~~gp~Ly~~Dp~G~~--------------~~~~~~a~G~gs  167 (250)
T d1iruc_         102 EPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNY--------------GGWKATCIGNNS  167 (250)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEE--------------EECSEEEESTTT
T ss_pred             CCcchHHHHHHHHHHHHHHhhhccCCcceEEEEEEEEcCCCCCEEEEEcccccE--------------eeeeEEEeCcCh
Confidence                                    0133233344588764 5799999999987              678899999999


Q ss_pred             hhhHHHHHHHHHhhccc-ccccccCCCCCHHHHHHHHHHHHh
Q psy9489         216 YADFQYLNDIVKQKILD-DDLHNDGFVLKPKSLHSWLTRVLY  256 (279)
Q Consensus       216 ~aD~~~l~~~l~~~~~~-~~~~ee~~~l~~~~la~~isr~ly  256 (279)
                          +.+..+|+++|++ +|+++|+.++..++|..++.++..
T Consensus       168 ----~~a~~~Le~~y~~~~ms~eeai~la~~al~~~~~~d~~  205 (250)
T d1iruc_         168 ----AAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKL  205 (250)
T ss_dssp             ----THHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTC
T ss_pred             ----HHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCC
Confidence                9999999999985 688888877777777766655443

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=2.2e-23  Score=179.26  Aligned_cols=144  Identities=18%  Similarity=0.229  Sum_probs=121.6

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      ++++++++|+|+|||+++||||||+|+|.+ ++++.+++.+||++|++|++++++|..+|++.+.+.++...        
T Consensus        14 Ya~~av~~G~t~vgi~~~dgVvlaad~r~~-~~~~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   92 (221)
T d1yara1          14 YAREAVKKGSTALGMKFANGVLLISDKKVR-SRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYG   92 (221)
T ss_dssp             HHHHHHTTSCCEEEEEETTEEEEEECCCCC-CTTBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhcCCcEEEEEeCCEEEEEEecccC-CcccccCccceEEEecCCceEEeeeccchHHHHHHHHHHHHHHHHHHcC
Confidence            356688999999999999999999999976 88888999999999999999999999999999999888511        


Q ss_pred             -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                               +|......+.|++.+++.|+..|+.|++              ...++.+.|+|+ 
T Consensus        93 ~~~~~~~l~~~~a~~~~~~~~~~~~rP~~~~~li~G~d~~gp~Ly~id~~G~~--------------~~~~~~a~G~g~-  157 (221)
T d1yara1          93 SLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTI--------------NEYKATAIGSGK-  157 (221)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCE--------------EEBSEEEESTTH-
T ss_pred             CcchHHHHHHHHHHHHHHHhhhccCCCcceEEEEEEEecCCCeEEEEcCCccE--------------EEeeEEEECCch-
Confidence                                     1322223344888778999999999987              677899999999 


Q ss_pred             hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHH
Q psy9489         217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLT  252 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~is  252 (279)
                         +.+..+|+++|+++|+.+|+.++..++|...+.
T Consensus       158 ---~~~~~~Le~~~~~~ms~~ea~~la~~~l~~~~~  190 (221)
T d1yara1         158 ---DAVVSFLEREYKENLPEKEAVTLGIKALKSSLE  190 (221)
T ss_dssp             ---HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSC
T ss_pred             ---HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHh
Confidence               999999999999988888887777777766554

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=9.8e-23  Score=172.96  Aligned_cols=156  Identities=19%  Similarity=0.248  Sum_probs=125.4

Q ss_pred             CcCcc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc---------
Q psy9489          92 STPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI---------  161 (279)
Q Consensus        92 ~~~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~---------  161 (279)
                      ++|+. ||||+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++.+|..+|+|.+.+.++...         
T Consensus         2 f~p~~~nG~Tivai~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~~~~~   81 (213)
T d1iru1_           2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK   81 (213)
T ss_dssp             CCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCccCCCcEEEEEEECCEEEEEECCccccCceeeccccCEEEEcCCCEEEEecCccchHHHHHHHHHHHHHHHHHhhCC
Confidence            56766 99999999999999999999999999999999999999999999999999999999999988511         


Q ss_pred             --------------------ccccceeeEEEEEeCC-cEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHH
Q psy9489         162 --------------------TPLTTGTSVLGLVFNG-GVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQ  220 (279)
Q Consensus       162 --------------------~pi~~g~tvlgi~~~~-gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~  220 (279)
                                          .|......+.|+..++ +.++..|+.|++              ...++.+.|+|+    .
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~l~~~d~~g~~--------------~~~~~~a~G~g~----~  143 (213)
T d1iru1_          82 AMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSY--------------QRDSFKAGGSAS----A  143 (213)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCE--------------EEESEEEEETTH----H
T ss_pred             chhHHHHHHHHHHHHHHHHhhhcccccceEEEecCCCcEEEecCCccee--------------eecCeeeecCcc----H
Confidence                                1211222333665554 567778999877              667899999999    9


Q ss_pred             HHHHHHHhhcc---------cccccccCCCCCHHHHHHHHHHHHhhccCCCCccceEE
Q psy9489         221 YLNDIVKQKIL---------DDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINA  269 (279)
Q Consensus       221 ~l~~~l~~~~~---------~~~~~ee~~~l~~~~la~~isr~lys~r~~~~P~~vs~  269 (279)
                      ++.+.|+.++.         ++++++++.++..+++..+..++.++..    |+-+.+
T Consensus       144 ~a~~~l~~~~~~~~~~~~~~~~~s~~ea~~~~~~~l~~~~~~d~~sg~----~~~v~~  197 (213)
T d1iru1_         144 MLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGD----ALRICI  197 (213)
T ss_dssp             HHHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCS----EEEEEE
T ss_pred             HHHHHHHHhhcccchhcccccCCCHHHHHHHHHHHHHHHHHhcCCCCC----ceEEEE
Confidence            99999998875         4577777788888888888887777654    555543

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.87  E-value=6.4e-23  Score=173.41  Aligned_cols=142  Identities=19%  Similarity=0.256  Sum_probs=120.5

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc------------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK------------------  160 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~------------------  160 (279)
                      ||+|||+++||||||+|+|.+.|+++.+++.+||++|+++++++++|..+|++.+.+.++..                  
T Consensus         1 TT~vgi~~~dgVvlaaD~r~s~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (202)
T d1j2qh_           1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA   80 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEECCEEEEEECCCcccCCeeccCccceEEEecCcEEEEecCcchhHHHHHHHHHHHhhhhhhccCCCccHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999998741                  


Q ss_pred             -----------cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEe-cccEEEEeccChhhHHHHHHHHHh
Q psy9489         161 -----------ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQYLNDIVKQ  228 (279)
Q Consensus       161 -----------~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i-~~~~~~~gSG~~aD~~~l~~~l~~  228 (279)
                                 ..|......+.|++.+++.++.+|+.|++              + ..++++.|+|+    +++..+|++
T Consensus        81 ~~~~~~~~~~~~~p~~~~~lvaG~d~~~~~l~~~d~~G~~--------------~~~~~~~a~G~g~----~~~~~~Le~  142 (202)
T d1j2qh_          81 TLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGA--------------IEEKDIVATGSGS----LTAYGVLED  142 (202)
T ss_dssp             HHHHHHHHHTTTSCCCEEEEEEEEETTEEEEEEECTTCCE--------------EEESSEEEESTTH----HHHHHHHHH
T ss_pred             HHHHHHHhhhcccceeeEEEEEEEcCCCceEEEEeCCCCe--------------EeecceEEccCCh----HHHHHHHHh
Confidence                       01222222233666667889999999875              3 34588999999    999999999


Q ss_pred             hcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         229 KILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       229 ~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      +|+++|+.+|+..+..++|..++.++..+.
T Consensus       143 ~~~~~ms~~ea~~l~~~al~~~~~~d~~~g  172 (202)
T d1j2qh_         143 RFTPEIGVDEAVELAVRAIYSAMKRDSASG  172 (202)
T ss_dssp             HCCTTCCHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            999999999999999999988888776654

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.87  E-value=5.7e-23  Score=179.20  Aligned_cols=146  Identities=16%  Similarity=0.181  Sum_probs=121.8

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      .+++++++|+|+|||+++||||||||+|.+.+.+ ..++.+||++|+++++++++|..+|++.+.+.++...        
T Consensus        23 ya~kav~~G~t~Igik~~dgVvlaad~r~~~~~~-~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~  101 (243)
T d1j2pa_          23 YAREAVKRGATAIGIKCKEGVILIADKRVGSKLL-EKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYD  101 (243)
T ss_dssp             HHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTB-CGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHcCCCEEEEEECCEEEEEEecCccccCc-cccccccEeecCCcEEEEeeecccHHHHHHHHHHHHHHHHHHhhC
Confidence            4566889999999999999999999999887765 5688999999999999999999999999999988410        


Q ss_pred             -------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         162 -------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                               +|......+.|++ +++.|+..|+.|++              ...++.+.|+|+ 
T Consensus       102 ~~~~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~D-~~p~Ly~~Dp~G~~--------------~~~~~~a~G~g~-  165 (243)
T d1j2pa_         102 IPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGAL--------------LEYKATAIGMGR-  165 (243)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCE--------------EEBSEEEESTTH-
T ss_pred             CCCcHHHHHHHHHHHHHHHhhhccCCccceeEEEEEec-CCceEEEEeccCce--------------eeeeEEEeCCCc-
Confidence                                     1221222223664 56899999999987              677899999999 


Q ss_pred             hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHH
Q psy9489         217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVL  255 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~l  255 (279)
                         +.+..+|+++|+++|+.+|+.++..++|...+.+++
T Consensus       166 ---~~a~~~Le~~y~~~ms~eeai~la~~~l~~~~~~d~  201 (243)
T d1j2pa_         166 ---MAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESEL  201 (243)
T ss_dssp             ---HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred             ---HHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhccc
Confidence               999999999999999999999998888887776543

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=3e-23  Score=181.61  Aligned_cols=146  Identities=14%  Similarity=0.107  Sum_probs=121.6

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK---------  160 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~---------  160 (279)
                      ++++++++|+|+|||+++||||||+|+|.+.+ ++..++.+||++|++|++++.+|..+|+|.+++.+++.         
T Consensus        23 yA~kav~~G~tvvgi~~~dgVvlaad~r~~~~-~~~~~~~~ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~y~~~~  101 (250)
T d1rypb_          23 YALTAVKQGVTSLGIKATNGVVIATEKKSSSP-LAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIY  101 (250)
T ss_dssp             HHHHHHHTSCCEEEEEETTEEEEEEECCCSCS-SBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHcCCCEEEEEeCCEEEEEEecccCCc-cccccccceeEeccCCEEEEeeecccHHHHHHHHHHHHHHHHHHHhc
Confidence            45678999999999999999999999997744 56688899999999999999999999999999877531         


Q ss_pred             c-------------------------ccccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489         161 I-------------------------TPLTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN  214 (279)
Q Consensus       161 ~-------------------------~pi~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG  214 (279)
                      .                         +|......+.|++. +++.|+..|+.|++              ...++++.|+|
T Consensus       102 ~~~~~~~~la~~~~~~~~~~~~~~~~rp~~v~~li~G~D~~~gp~Ly~id~~G~~--------------~~~~~~a~G~g  167 (250)
T d1rypb_         102 GEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSY--------------FPWKATAIGKG  167 (250)
T ss_dssp             SSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCE--------------EEBSEEEESTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhhcCCcCeeEEEEEEEecCCCCCEEEEEcCcEEE--------------EEeeEEecCcc
Confidence            0                         12222233347875 46899999999987              67789999999


Q ss_pred             ChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHH
Q psy9489         215 DYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRV  254 (279)
Q Consensus       215 ~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~  254 (279)
                      +    +.+..+|+++|+++|+.+|+.++..++|.+.+.++
T Consensus       168 s----~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d  203 (250)
T d1rypb_         168 S----VAAKTFLEKRWNDELELEDAIHIALLTLKESVEGE  203 (250)
T ss_dssp             H----HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSC
T ss_pred             h----HHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhhcc
Confidence            9    99999999999999999999888888887776654

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=3.3e-22  Score=169.34  Aligned_cols=147  Identities=20%  Similarity=0.142  Sum_probs=123.7

Q ss_pred             Ccc-CCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------
Q psy9489          94 PLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------  161 (279)
Q Consensus        94 ~~~-~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------  161 (279)
                      |++ +|+|+|||+++||||||+|+|.+.+.++..++.+||+++ ++++++++|..+|++.+.+.++...           
T Consensus         3 p~~~nG~Tivgi~~~d~VvlaaD~r~~~~~~~~~~~~~Ki~~i-~~i~~~~~G~~~D~~~l~~~~~~~~~~~~~~~~~~~   81 (204)
T d1rypj_           3 PSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAI   81 (204)
T ss_dssp             GGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEE-TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CCccCCeEEEEEEECCEEEEEEcCCcccCCEeecCcccEEEEc-CCEEEEecCcchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            555 899999999999999999999999999999999999999 5999999999999999999987511           


Q ss_pred             ------------------ccccceeeEEEEEeCC--cEEEEEcCCCccCceeeecCCCceEEe-cccEEEEeccChhhHH
Q psy9489         162 ------------------TPLTTGTSVLGLVFNG--GVILAADSAGYYGSMMRFNDCPRIMQI-NKFTILGAGNDYADFQ  220 (279)
Q Consensus       162 ------------------~pi~~g~tvlgi~~~~--gvlia~D~~gs~g~li~~~~~~kI~~i-~~~~~~~gSG~~aD~~  220 (279)
                                        .|......+.|++.++  +.++.+|+.|++              . ...++++|+|+    +
T Consensus        82 ~~~~la~~l~~~l~~~~~~p~~v~~li~G~d~~~g~~~L~~~D~~G~~--------------~~~~~~~~~G~g~----~  143 (204)
T d1rypj_          82 EPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCI--------------DEAKDFIVSGTAS----D  143 (204)
T ss_dssp             CHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCE--------------ECCSSEEEEETTH----H
T ss_pred             cchHHHHHHHHHHHhhcccceeeeEEEEEEecCCCcceEEEeCCCCcc--------------ccccCcEEeecch----H
Confidence                              1222223334776543  578999999976              3 34578888999    9


Q ss_pred             HHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         221 YLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       221 ~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      ++...|+..|+++|+.+|+.++..+++..+..+++++..
T Consensus       144 ~a~~~l~~~~~~~ms~~ea~~l~~~al~~a~~~d~~sg~  182 (204)
T d1rypj_         144 QLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGW  182 (204)
T ss_dssp             HHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHTTBTTSCS
T ss_pred             HHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhcCccCC
Confidence            999999999999999999999999999999998888754

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.5e-22  Score=176.34  Aligned_cols=145  Identities=11%  Similarity=0.129  Sum_probs=119.9

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      ++++++++|+|+|||+++||||||+|+|.+.+ ++..++.+||++|+++++++++|..+|+|.+.+.++...        
T Consensus        18 ya~~a~~~G~t~Vgi~~~dgVvla~d~r~~~~-~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   96 (242)
T d1rype_          18 YSLEAIKLGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYD   96 (242)
T ss_dssp             HHHHHHTTSCCEEEEECSSCEEEEEECCCSST-TBCGGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCEEEEEeCCEEEEEEeCCccCc-CcccCccceEEEcCCCEEEEEeecchhHHHHHHHHHHHHHHHHHHcC
Confidence            35668899999999999999999999998765 778889999999999999999999999999999887410        


Q ss_pred             -------------------------------ccccceeeEEEEEeCC-cEEEEEcCCCccCceeeecCCCceEEecccEE
Q psy9489         162 -------------------------------TPLTTGTSVLGLVFNG-GVILAADSAGYYGSMMRFNDCPRIMQINKFTI  209 (279)
Q Consensus       162 -------------------------------~pi~~g~tvlgi~~~~-gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~  209 (279)
                                                     +|+..+..+.|++.++ +.|+..|+.|++              ...+++
T Consensus        97 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~rP~~~~~ii~G~D~~~~p~L~~idp~G~~--------------~~~~~~  162 (242)
T d1rype_          97 EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTF--------------YRYNAK  162 (242)
T ss_dssp             SCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCE--------------EEBSEE
T ss_pred             CCCchhHHHHHHHHHHHHHhccccccchhccccceEEEEEEEeccccceEEEEEcCCCce--------------ecccee
Confidence                                           1222223334787554 699999999987              667789


Q ss_pred             EEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489         210 LGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR  253 (279)
Q Consensus       210 ~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr  253 (279)
                      +.|+|+    +.+..+|+++|+++|+.+|+..+..++|.....+
T Consensus       163 a~G~gs----~~~~~~Le~~~~~~ms~~ea~~la~~~l~~~~~~  202 (242)
T d1rype_         163 AIGSGS----EGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE  202 (242)
T ss_dssp             EESTTH----HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred             ecccch----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc
Confidence            999999    9999999999999998888888877777765543

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=99.85  E-value=3.3e-22  Score=171.55  Aligned_cols=144  Identities=15%  Similarity=0.179  Sum_probs=121.4

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------------  161 (279)
                      ||+|||+++||||||+|+|.+.|+++.+++++||++|+++++++++|..+|+|.+.+.++...                 
T Consensus         1 TTivgi~~kdgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T d1q5qh_           1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA   80 (224)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeecCCcceEEEeCCcEEEEecccchHHHHHHHHHHHHhHHHHHhhCCCccHHHHH
Confidence            799999999999999999999999999999999999999999999999999999999887511                 


Q ss_pred             ---------------ccccceeeEEEEEe------CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHH
Q psy9489         162 ---------------TPLTTGTSVLGLVF------NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQ  220 (279)
Q Consensus       162 ---------------~pi~~g~tvlgi~~------~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~  220 (279)
                                     +|......++++..      .+|.++..|+.|++            +....++.+.|+|+    .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~d~~~~~~l~~~d~~G~~------------~~~~~~~~a~GsG~----~  144 (224)
T d1q5qh_          81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGR------------YEERAGYHAVGSGS----L  144 (224)
T ss_dssp             HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCE------------EECCSSEEEESTTH----H
T ss_pred             HHHHHHHHHhhcccccCccceeeEEEeecccccccCCceEEEEEccCcE------------EEeccceeeecCcc----H
Confidence                           01111223334432      25788899999875            11234679999999    9


Q ss_pred             HHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhc
Q psy9489         221 YLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNR  258 (279)
Q Consensus       221 ~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~  258 (279)
                      ++.+.|+++|+++|+.+|+.++..++|..++.++.+|.
T Consensus       145 ~a~~~Le~~~~~~mt~~ea~~l~~~al~~a~~rD~~SG  182 (224)
T d1q5qh_         145 FAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATG  182 (224)
T ss_dssp             HHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred             HHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhhccccC
Confidence            99999999999999999999999999999999999885

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=3.3e-22  Score=173.34  Aligned_cols=144  Identities=13%  Similarity=0.103  Sum_probs=118.8

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc--------c
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------I  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------~  161 (279)
                      ++++++++|+|+|||+++||||||+|+|.+.+ ++..++.+||++|+++++++.+|..+|++.+.+.++..        .
T Consensus        19 Ya~kav~~G~t~vgik~~dgVvlaad~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   97 (234)
T d1irue_          19 YDIEAIKLGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYN   97 (234)
T ss_dssp             HHHHHHTTSCCEEEEEETTEEEEEEECCCCCT-TBCTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCEEEEEeCCEEEEEEecCccCC-CcccCcccCEEEccCcEEEEEeeccchHHHHHHHHHHHHHHHHHhhC
Confidence            45678899999999999999999999997755 55688999999999999999999999999999998751        0


Q ss_pred             ------------------------------ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEE
Q psy9489         162 ------------------------------TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILG  211 (279)
Q Consensus       162 ------------------------------~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~  211 (279)
                                                    +|...+..+.|++.+++.|+..|+.|++              ...++++.
T Consensus        98 ~~i~~~~la~~i~~~~~~~t~~~~~~~~~~rP~~~~~il~G~D~~gp~Ly~idp~G~~--------------~~~~~~a~  163 (234)
T d1irue_          98 ETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTF--------------VQCDARAI  163 (234)
T ss_dssp             SCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCE--------------EEBSEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHhhcccccccccccceEEEEEEEEcCCCCEEEEEecCccc--------------ceeeeEEe
Confidence                                          1111122233788778899999999987              66788899


Q ss_pred             eccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHH
Q psy9489         212 AGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLT  252 (279)
Q Consensus       212 gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~is  252 (279)
                      |+|+    +.+.++|++.|+++|+.+|+.++..++|.+.+.
T Consensus       164 G~gs----~~~~~~Le~~~~~~~~~eeai~~a~~al~~~~~  200 (234)
T d1irue_         164 GSAS----EGAQSSLQELYHKSMTLKEAIKSSLIILKQVME  200 (234)
T ss_dssp             STTH----HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred             CCch----HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Confidence            9999    999999999999988888887777777765543

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=2.5e-22  Score=175.26  Aligned_cols=145  Identities=13%  Similarity=0.092  Sum_probs=119.6

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK---------  160 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~---------  160 (279)
                      ++++++++|+|+|||+++||||||+|+|.+.+.++ .++.+||++|+++++++.+|+.+|++.+.+.++..         
T Consensus        22 ya~kav~~G~t~igik~~dgVvlaad~~~~~~~~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~  100 (244)
T d1rypg_          22 YAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLV-PQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYK  100 (244)
T ss_dssp             HHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBC-TTTSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCEEEEEeCCEEEEEEecccCCCCcc-ccccceEEEccCceEEEEccchhhHHHHHHHHHHHHHHHHHhcC
Confidence            45678899999999999999999999998887655 56678999999999999999999999999888741         


Q ss_pred             ------------------------cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         161 ------------------------ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       161 ------------------------~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                              .+|+.....+.|++.+++.|+..|+.|++              ...++++.|+|+ 
T Consensus       101 ~~~~~~~la~~~~~~~~~~t~~~~~RP~~~~~iiaG~D~~gp~Ly~idp~Gs~--------------~~~~~~a~G~gs-  165 (244)
T d1rypg_         101 TPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSY--------------WGYKGAATGKGR-  165 (244)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCE--------------EEBSEEEESTTH-
T ss_pred             CCCCHHHHHHHHHHHHHHhhcccccCCceEEEEEEEEeCCCCEEEEEcCCccE--------------EecCeEecCCcc-
Confidence                                    01332333444888788999999999987              778899999999 


Q ss_pred             hhHHHHHHHHHh---hcccccccccCCCCCHHHHHHHHHH
Q psy9489         217 ADFQYLNDIVKQ---KILDDDLHNDGFVLKPKSLHSWLTR  253 (279)
Q Consensus       217 aD~~~l~~~l~~---~~~~~~~~ee~~~l~~~~la~~isr  253 (279)
                         +.+..+|++   +|+++|+.+|+.++..++|...+.+
T Consensus       166 ---~~~~~~Lek~~~~~~~~mt~eeai~la~~~L~~~~~~  202 (244)
T d1rypg_         166 ---QSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHED  202 (244)
T ss_dssp             ---HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGG
T ss_pred             ---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhc
Confidence               889999984   6888888888888887777766543

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=1.2e-22  Score=175.60  Aligned_cols=145  Identities=15%  Similarity=0.134  Sum_probs=117.8

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      .+++++++|+|+|||+++||||||+|+|.+.+.+ ..++.+||++|+++++++++|..+|++.+.+.++...        
T Consensus        23 ya~kav~~G~tvigik~~dgVvlaaD~r~~~~~~-~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~  101 (233)
T d1irub_          23 YALAAVAGGAPSVGIKAANGVVLATEKKQKSILY-DERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQ  101 (233)
T ss_dssp             HHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSB-CSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCEEEEEeCCEEEEEEeCCcccCCc-cccccceEEEecCceEEEEeccchHHHHHHHHHHHHHHHHHHHhC
Confidence            3566888999999999999999999999887764 5889999999999999999999999999999888511        


Q ss_pred             ccc-----------------------cceee-EE-EEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         162 TPL-----------------------TTGTS-VL-GLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       162 ~pi-----------------------~~g~t-vl-gi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                      .++                       ..+.. ++ |.+.+++.++..|+.|++              ...++.+.|+|+ 
T Consensus       102 ~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~~li~g~d~~~~~ly~id~~G~~--------------~~~~~~a~G~gs-  166 (233)
T d1irub_         102 EPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAY--------------FAWKATAMGKNY-  166 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCE--------------EEBSEEEESTTH-
T ss_pred             CCCCHHHHHHHHHHHHHHHhhccccccceEEEeeeecccCCceEEEEcCCcce--------------EeccceecCCcH-
Confidence            000                       12222 33 455557889999999987              677899999999 


Q ss_pred             hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHH
Q psy9489         217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTR  253 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr  253 (279)
                         +++..+|++.|+++|+.+|+.++..++|...+.+
T Consensus       167 ---~~~~~~Le~~~~~~ms~eea~~l~~~~L~~~~~~  200 (233)
T d1irub_         167 ---VNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG  200 (233)
T ss_dssp             ---HHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCS
T ss_pred             ---HHHHHHHHhhcccCccHHHHHHHHHHHHHHHHhc
Confidence               9999999999999888888777777776655543

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=2.7e-22  Score=175.14  Aligned_cols=143  Identities=12%  Similarity=0.142  Sum_probs=117.6

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      ++++++++|+|+|||+++||||||+|+|.+. .++..++.+||++|++|++++++|+.+|++.+.+.++...        
T Consensus        25 Ya~~av~~G~t~VGik~~dgVvlaad~~~~~-~~~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~g  103 (245)
T d1irug_          25 YAMKAVENSSTAIGIRCKDGVVFGVEKLVLS-KLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFG  103 (245)
T ss_dssp             HHHHHHHTSCCEEEEECSSBEEEEEEEECSC-TTBCTTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCcEEEEEeCCEEEEEEeccccc-cccccCccceEEEcCCCEEEEeccCchhHHHHHHHHHHHHHHHHHHhC
Confidence            4566899999999999999999999999765 4556889999999999999999999999999999998510        


Q ss_pred             -------------------------ccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489         162 -------------------------TPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND  215 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~  215 (279)
                                               +|+..+..+.|++.+ ++.|+..|+.|++              ...++.+.|+|+
T Consensus       104 ~~i~~~~la~~la~~~~~~t~~~~~rP~~vs~li~G~D~~~gp~Ly~iDp~G~~--------------~~~~~~a~G~gs  169 (245)
T d1irug_         104 YNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVS--------------YGYWGCAIGKAR  169 (245)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCE--------------EEBSEEEESTTH
T ss_pred             CCCCHHHHHHHHHHHHHHhhccccccccceEEEEEEEcCCCCceEEEEcCCceE--------------EeeeEEEECCcc
Confidence                                     122222333378755 5789999999987              677899999999


Q ss_pred             hhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHH
Q psy9489         216 YADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWL  251 (279)
Q Consensus       216 ~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~i  251 (279)
                          +.+..+|+++|+++|+.+|+.++..++|...+
T Consensus       170 ----~~a~~~Le~~~~~dmt~eea~~l~~~~l~~~~  201 (245)
T d1irug_         170 ----QAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVH  201 (245)
T ss_dssp             ----HHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHS
T ss_pred             ----HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence                99999999999988888887777766665444

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=99.84  E-value=7.8e-22  Score=170.32  Aligned_cols=155  Identities=13%  Similarity=0.120  Sum_probs=115.3

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK---------  160 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~---------  160 (279)
                      .+++++++|+|+|||+++||||||+|+|.+        +.+||++|++|++|+++|..+|+|.|++.++..         
T Consensus        11 yA~~av~~GtT~vgi~~~~GVvlaad~r~~--------s~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~   82 (227)
T d1q5qa_          11 LARKGIARGRSVVVLTFRDGVLFVAENPST--------ALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYD   82 (227)
T ss_dssp             HHHHHHHTSCCEEEEECSSEEEEEECCSCS--------SSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhcCCCEEEEEECCEEEEEEccCCC--------CcceEEEecCceEEEecCchHHHHHHHHHHHHHHHHHHHHhC
Confidence            346688999999999999999999999943        468999999999999999999999999988751         


Q ss_pred             ccccc----------------------ceeeEE--EEEe----CCcEEEEEcCCCccCceeeecCCCceEEec-ccEEEE
Q psy9489         161 ITPLT----------------------TGTSVL--GLVF----NGGVILAADSAGYYGSMMRFNDCPRIMQIN-KFTILG  211 (279)
Q Consensus       161 ~~pi~----------------------~g~tvl--gi~~----~~gvlia~D~~gs~g~li~~~~~~kI~~i~-~~~~~~  211 (279)
                      ..+++                      .+.++|  |++.    +++.|+.+|+.|++              .. ..++++
T Consensus        83 ~~~~~~~~la~~~~~~~~~~~~~~~rP~gvs~lvaG~D~~g~~~~p~Ly~vDpsG~~--------------~~~~~~~~~  148 (227)
T d1q5qa_          83 RRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSI--------------VDEQHFVVM  148 (227)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCE--------------EEESSEEEE
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEEecCCCCCCCEEEEEccccce--------------eeecccccC
Confidence            11111                      233333  6764    35789999999986              44 345566


Q ss_pred             eccChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhhccCCCCccceEEEEE
Q psy9489         212 AGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVA  272 (279)
Q Consensus       212 gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~  272 (279)
                      |+|+    +.+..+|+++|+++|+++|+.++..++|..++.++..+..  +.+-.+.+.+.
T Consensus       149 g~~s----~~~~~~Le~~y~~~ms~eea~~la~~aL~~a~~~d~~~~~--~~~~~ievavi  203 (227)
T d1q5qa_         149 GGTT----EPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRN--VDVASLEVAVL  203 (227)
T ss_dssp             SSSH----HHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC----------CCSSCSEEEEE
T ss_pred             CCch----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcccccCC--cCcceEEEEEE
Confidence            6666    7889999999999999999999999999999888776543  34555555553

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=2.5e-21  Score=161.67  Aligned_cols=143  Identities=13%  Similarity=0.097  Sum_probs=122.6

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc-----------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI-----------------  161 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~-----------------  161 (279)
                      ||+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..+|++.+.+.++...                 
T Consensus         2 t~ivgi~~kdgVviaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~~G~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (199)
T d1iruk_           2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA   81 (199)
T ss_dssp             CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             eEEEEEEECCEEEEEECCCccCCCeeecCCcceEEEecCcEEEEecccchHHHHHHHHHHHHhhhhhhhcCCcCcHHHHH
Confidence            689999999999999999999999999999999999999999999999999999999998511                 


Q ss_pred             --------------ccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHH
Q psy9489         162 --------------TPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIV  226 (279)
Q Consensus       162 --------------~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l  226 (279)
                                    .|......+.|++.+ ++.++..|+.|.+              ...++.+.|+|+    +++..+|
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~aG~d~~~~~~l~~~~~~g~~--------------~~~~~~a~G~gs----~~a~~~l  143 (199)
T d1iruk_          82 NFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAAL--------------AKAPFAAHGYGA----FLTLSIL  143 (199)
T ss_dssp             HHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCE--------------EECSEEEESHHH----HHHHHHH
T ss_pred             HHHHHHHHHHhhccCCcceeeeecceeccCCceEEeecccceE--------------Eeeeeeeecccc----hhhhHHH
Confidence                          121122333367655 4677788998866              567889999999    9999999


Q ss_pred             HhhcccccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         227 KQKILDDDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       227 ~~~~~~~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      +..|+++++.+++.++..+++..+..++.++..
T Consensus       144 ~~~~~~~~~~~ea~~l~~~al~~~~~~d~~sg~  176 (199)
T d1iruk_         144 DRYYTPTISRERAVELLRKCLEELQKRFILNLP  176 (199)
T ss_dssp             HHHCCTTCCHHHHHHHHHHHHHHHHHTBCBCCC
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHHHhcCCcCC
Confidence            999999999999999999999999998888764

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.3e-21  Score=170.16  Aligned_cols=143  Identities=13%  Similarity=0.129  Sum_probs=114.5

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      .+++++++|+|+|||+++||||||+|+|.+.+.++..++.+||++|++|++++.+|..+|++.+.+.++...        
T Consensus        20 ya~kav~~G~tvIgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   99 (241)
T d1rypd_          20 YALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLE   99 (241)
T ss_dssp             HHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCEEEEEeCCEEEEEEEccccccCcccccccccEEEeCCCEEEEeeeccchHHHHHHHHHHHHHHHHHHcC
Confidence            445688999999999999999999999999999998899999999999999999999999999999998511        


Q ss_pred             -------------------------ccccceeeEEEEEe--CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489         162 -------------------------TPLTTGTSVLGLVF--NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN  214 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~--~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG  214 (279)
                                               +|......+.|++.  +++.|+..|+.|++              ...++++.|+|
T Consensus       100 ~~i~~~~la~~i~~~~~~~t~~~~~rP~~v~~li~G~d~~~~~p~Ly~idp~G~~--------------~~~~~~a~G~g  165 (241)
T d1rypd_         100 DPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIY--------------SSWSAQTIGRN  165 (241)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCE--------------EEBSEEEESTT
T ss_pred             CCCCHHHHHHHHHHHHHHHhhccccCcccceEEEEEEccccCcceEEEecCCEEE--------------EeeCeEEECcC
Confidence                                     12222223336763  35789999999987              67789999999


Q ss_pred             ChhhHHHHHHHHHhhccc---ccccccCCCCCHHHHHHH
Q psy9489         215 DYADFQYLNDIVKQKILD---DDLHNDGFVLKPKSLHSW  250 (279)
Q Consensus       215 ~~aD~~~l~~~l~~~~~~---~~~~ee~~~l~~~~la~~  250 (279)
                      +    +.+..+|+++|++   +++.+|+..+..++|.+.
T Consensus       166 s----~~~~~~Le~~~~~~~~~~t~~e~i~lal~al~~~  200 (241)
T d1rypd_         166 S----KTVREFLEKNYDRKEPPATVEECVKLTVRSLLEV  200 (241)
T ss_dssp             H----HHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHH
T ss_pred             H----HHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHH
Confidence            9    9999999999964   345555555555555443

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=1.6e-21  Score=170.00  Aligned_cols=145  Identities=12%  Similarity=0.106  Sum_probs=116.2

Q ss_pred             CcCcCccCC-ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc--------
Q psy9489          90 SFSTPLTTG-TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------  160 (279)
Q Consensus        90 ~~~~~~~~G-~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------  160 (279)
                      ++++++++| +|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++++.+|..+|++.+.+.++..        
T Consensus        26 YA~kav~~gg~t~igIk~~dgVVlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~  104 (244)
T d1irua_          26 YAFKAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKY  104 (244)
T ss_dssp             HHHHHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCccEEEEEcCCEEEEEEecccc-cccccCCccceEEEecCCcEEEEecchHHHHHHHHHHHHHHHHHHHHc
Confidence            445678875 589999999999999999976 6777788999999999999999999999999999988841        


Q ss_pred             -------------------------cccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489         161 -------------------------ITPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN  214 (279)
Q Consensus       161 -------------------------~~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG  214 (279)
                                               .+|+.....+.|++.+ ++.|+..|+.|++              ...++.+.|+|
T Consensus       105 ~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~D~~~g~~Ly~~Dp~G~~--------------~~~~~~a~G~g  170 (244)
T d1irua_         105 GYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY--------------CGFKATAAGVK  170 (244)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCE--------------EEBSEEEEETT
T ss_pred             CCCCCchHHHHHHHHHHHHHhcccccCccceeeEEEEEcCCCCcEEEEEcCCccE--------------EecceEeccCc
Confidence                                     0122223334488764 5789999999987              67788999999


Q ss_pred             ChhhHHHHHHHHHhhccc--ccccccCCCCCHHHHHHHHHH
Q psy9489         215 DYADFQYLNDIVKQKILD--DDLHNDGFVLKPKSLHSWLTR  253 (279)
Q Consensus       215 ~~aD~~~l~~~l~~~~~~--~~~~ee~~~l~~~~la~~isr  253 (279)
                      +    +.+..+|+++|.+  +++++|+.++..+++..++.+
T Consensus       171 s----~~~~~~Le~~~~~~~d~t~eeai~l~~~~l~~~~~~  207 (244)
T d1irua_         171 Q----TESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSI  207 (244)
T ss_dssp             H----HHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred             h----hHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHhc
Confidence            9    9999999999953  566777777777776665554

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=3.3e-20  Score=161.44  Aligned_cols=146  Identities=10%  Similarity=0.079  Sum_probs=115.8

Q ss_pred             CcCcCccC-CccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc--------
Q psy9489          90 SFSTPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK--------  160 (279)
Q Consensus        90 ~~~~~~~~-G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~--------  160 (279)
                      ++++++++ |+|+|||+++||||||+|+|.+ ++++.+++.+||++|++|++++++|+.+|++.+.+.++..        
T Consensus        21 YA~~av~~~g~T~igik~~dgVvlaad~r~~-~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   99 (243)
T d1rypa_          21 YAFKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKY   99 (243)
T ss_dssp             HHHHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCceEEEEEcCCEEEEEEecccc-ccccccCcccceEecCCCEEEEEecCcHHHHHHHHHHHHHHHHHHHHh
Confidence            45668885 6689999999999999999976 5888899999999999999999999999999999998751        


Q ss_pred             -------------------------cccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEecc
Q psy9489         161 -------------------------ITPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGN  214 (279)
Q Consensus       161 -------------------------~~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG  214 (279)
                                               .+|+..+..+.|++.+ ++.|+..|+.|++              ...++.+.|+|
T Consensus       100 ~~~~~~~~~a~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~g~~Ly~~Dp~G~~--------------~~~~~~a~G~g  165 (243)
T d1rypa_         100 GYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYY--------------VGYKATATGPK  165 (243)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCE--------------EEBSEEEESTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhcccccCccceEEEEEEccCCCCeEEEEcCCEEE--------------EecceEEeCcc
Confidence                                     1133233344488755 5799999999987              67789999999


Q ss_pred             ChhhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHH
Q psy9489         215 DYADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVL  255 (279)
Q Consensus       215 ~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~l  255 (279)
                      +    ..+..+|+++|++++..+.+ .++.+.+.+..-+.+
T Consensus       166 s----~~~~~~Le~~~~~~~~~~~~-~~s~eeav~la~~~l  201 (243)
T d1rypa_         166 Q----QEITTNLENHFKKSKIDHIN-EESWEKVVEFAITHM  201 (243)
T ss_dssp             H----HHHHHHHHHHHHHHCSSSCC-CSSHHHHHHHHHHHH
T ss_pred             H----HHHHHHHHHHhhcccccccc-cccHHHHHHHHHHHH
Confidence            9    99999999999977655433 345555555544444

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=2.3e-21  Score=168.44  Aligned_cols=139  Identities=14%  Similarity=0.125  Sum_probs=110.2

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK---------  160 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~---------  160 (279)
                      .+++++++|+|+|||+++||||||||+|.+.+..   .+.+||++|++++++++||+.+|++.+++.++..         
T Consensus        21 YA~kav~~G~t~vgik~~dgVvlaad~~~~~~~~---~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   97 (238)
T d1iruf_          21 YAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFD   97 (238)
T ss_dssp             HHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhcCCCEEEEEeCCEEEEEEecccccCCC---CccceEEEeCCceEEEEeccchHHHHHHHHHHHHHHHHHHHcC
Confidence            4566889999999999999999999999876654   3558999999999999999999999999999851         


Q ss_pred             ------------------------cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         161 ------------------------ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       161 ------------------------~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                              .+|...+..+.|++.+++.|+..|+.|++              ...++.+.|+|+ 
T Consensus        98 ~~i~~~~l~~~l~~~~~~y~~~~~~rP~~v~~il~G~D~~gp~Ly~~D~~G~~--------------~~~~~~a~G~g~-  162 (238)
T d1iruf_          98 RPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANY--------------FDCRAMSIGARS-  162 (238)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCE--------------EEESEEEESTTH-
T ss_pred             CCcchHHHHHHHHHHHHHHhhccCCCcccceEEEEEEcCCCceEEEEcCCCCE--------------EeeeeEEECCCc-
Confidence                                    02322333344888778999999999987              677889999999 


Q ss_pred             hhHHHHHHHHHhhccccc--ccccCCCCCHHHHHH
Q psy9489         217 ADFQYLNDIVKQKILDDD--LHNDGFVLKPKSLHS  249 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~~~--~~ee~~~l~~~~la~  249 (279)
                         +.+.++|+++|+++|  +++|+.++..+++.+
T Consensus       163 ---~~~~~~Lek~~~~~~~~~~~eav~lai~al~~  194 (238)
T d1iruf_         163 ---QSARTYLERHMSEFMECNLNELVKHGLRALRE  194 (238)
T ss_dssp             ---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred             ---hhhHHHHHhhcccccCCCHHHHHHHHHHHHHH
Confidence               999999999999765  344444444444443

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=2.2e-21  Score=169.01  Aligned_cols=129  Identities=11%  Similarity=0.186  Sum_probs=108.0

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccc--------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKI--------  161 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~--------  161 (279)
                      ++++++++|+|+|||+++||||||+|+|. .+.++.+++.+||++|++++++++||..+|+|.+.+.++...        
T Consensus        20 ya~kav~~G~Tvvgik~~dgVvla~d~r~-~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   98 (243)
T d1irud_          20 YAQEAVKKGSTAVGVRGRDIVVLGVEKKS-VAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVE   98 (243)
T ss_dssp             HHHHHHHTSCCEEEECCSSEEEEEECCCC-CCSSSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHhcCCCEEEEEeCCEEEEEEeccc-cCcccCCCccccEEECCCCEEEEEEEchhhHHHHHHHHHHHHHHHHHhcC
Confidence            44668899999999999999999999994 599999999999999999999999999999999999988510        


Q ss_pred             -------------------------ccccceeeEEEEEeC-CcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccC
Q psy9489         162 -------------------------TPLTTGTSVLGLVFN-GGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGND  215 (279)
Q Consensus       162 -------------------------~pi~~g~tvlgi~~~-~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~  215 (279)
                                               +|......+.|++.+ ++.|+.+|+.|++              ...++.+.|+|+
T Consensus        99 ~~i~v~~la~~ls~~~~~~t~~~~~rp~~v~~li~G~D~~~~p~Ly~idp~G~~--------------~~~~~~a~G~gs  164 (243)
T d1irud_          99 DPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTY--------------HAWKANAIGRGA  164 (243)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCE--------------EEBSEEEESTTH
T ss_pred             CCccHHHHHHHHHHHHHHHHhcccCCccceEEEEEEEcCCCCCEEEEecCcEEE--------------EeccEEEECCCh
Confidence                                     122222333477655 5899999999987              677899999999


Q ss_pred             hhhHHHHHHHHHhhcccccccc
Q psy9489         216 YADFQYLNDIVKQKILDDDLHN  237 (279)
Q Consensus       216 ~aD~~~l~~~l~~~~~~~~~~e  237 (279)
                          +.+..+|+++|++++..+
T Consensus       165 ----~~a~~~Lek~~~~~~~~~  182 (243)
T d1irud_         165 ----KSVREFLEKNYTDEAIET  182 (243)
T ss_dssp             ----HHHHHHHTTTCCSSTTCS
T ss_pred             ----HHHHHHHHHhcccCCCcc
Confidence                999999999999766543

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.7e-19  Score=155.68  Aligned_cols=117  Identities=35%  Similarity=0.711  Sum_probs=106.6

Q ss_pred             cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccccc--
Q psy9489         161 ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHND--  238 (279)
Q Consensus       161 ~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee--  238 (279)
                      .+|+.+|+|+||+++++||++|+|++.++|+++.+++.+||++++++++++.+|..+|++.+.+.++.+.+ .+++++  
T Consensus         2 ~~~i~tGtTivgi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~-~~~~~~~~   80 (233)
T d1ryp2_           2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVT-ENAYDNPL   80 (233)
T ss_dssp             CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHH-HHHTTCTT
T ss_pred             CCCccccceEEEEEECCEEEEEECCCcccCCeeecCCcceEEEeCCCEEEEeccCchHHHHHHHHHHHHHH-HHHHhhCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999998766 444443  


Q ss_pred             ---CCCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCC
Q psy9489         239 ---GFVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE  278 (279)
Q Consensus       239 ---~~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~  278 (279)
                         ...++++.+++++++.+|++|.+++|++|+++|+|+|+++
T Consensus        81 ~~~~~~~~~~~~a~~l~~~~y~~~~~~~P~~~~~liaG~d~~g  123 (233)
T d1ryp2_          81 ADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNG  123 (233)
T ss_dssp             TTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTS
T ss_pred             CCCCcccCHHHHHHHHHHHHHhhccccCCceeEEEEEEEcCCC
Confidence               5788999999999999999877799999999999999754

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

Probab=99.79  E-value=4.9e-20  Score=152.82  Aligned_cols=145  Identities=8%  Similarity=0.086  Sum_probs=109.2

Q ss_pred             CCccEEEEEeCCeEEEEEeCCCccCCceeeC-CCCceEEecC-ceEeeecCcccccccchhhhhccccccc---------
Q psy9489          97 TGTSVLGLVFNGGVILAADSAGYYGSMMRFN-DCPRIMQINK-FTILGAGNDYADFQYLNDIVKQKITPLT---------  165 (279)
Q Consensus        97 ~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~-~~~Ki~~i~~-~~~~~~sG~~aD~~~l~~~l~~~~~pi~---------  165 (279)
                      +|||+|||+|+||||||||+|.|+|+++..+ ..+|++++++ .++++.+|..+|.+.+.+.+++..+...         
T Consensus         4 ~GTTivai~~~dGVvlAaDtR~S~G~~i~~~~~~~ki~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (180)
T d2z3ba1           4 HATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVE   83 (180)
T ss_dssp             CCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             CCeEEEEEEECCEEEEEECCcccCCceeEecccceEEEEecccceecccchHHHHHHHHHHHHHHHHHhhccccchhHHH
Confidence            7999999999999999999999999888876 5788998977 4888889999999999988875221100         


Q ss_pred             -------------ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccc
Q psy9489         166 -------------TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILD  232 (279)
Q Consensus       166 -------------~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~  232 (279)
                                   ...........++.....|..+.              ...+.+.++|||+    .++++.|+.+|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~a~GSGs----~~A~g~l~~~~~~  145 (180)
T d2z3ba1          84 LAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVI--------------EPDDGILAIGSGG----NYALAAGRALKKH  145 (180)
T ss_dssp             HHHHHHHCTTGGGCCCCEEEECSSCEEEECTTCCEE--------------CCSSSEEEESTTH----HHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHhhcceeeeeccccccccCCceee--------------cccccEEEEcCch----HHHHHHHHHHhhc
Confidence                         00111111111222222222221              1345588999999    9999999999999


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         233 DDLHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       233 ~~~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      +++.+|+++|..+++..+..+++|+..
T Consensus       146 ~~s~~eA~~l~~~Al~~A~e~dvyT~~  172 (180)
T d2z3ba1         146 AGESMSASEIARAALETAGEICVYTND  172 (180)
T ss_dssp             HGGGCCHHHHHHHHHHHHHHHCTTCCS
T ss_pred             CCCccCHHHHHHHHHHHHHhhcEEcCC
Confidence            999999999999999999999999864

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.6e-20  Score=162.53  Aligned_cols=159  Identities=14%  Similarity=0.117  Sum_probs=116.4

Q ss_pred             CcCcCccCCccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhcc---------
Q psy9489          90 SFSTPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQK---------  160 (279)
Q Consensus        90 ~~~~~~~~G~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~---------  160 (279)
                      ++++++++|+|+|||+++||||||+|+|.+.+ +  ..+.+||++|+++++|+.||..+|++.+.+.++..         
T Consensus        23 yA~kav~~g~t~igi~~~dgvvlaad~~~~~~-l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~   99 (233)
T d1rypf_          23 YALEAIKQGSVTVGLRSNTHAVLVALKRNADE-L--SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFN   99 (233)
T ss_dssp             HHHHHHHTSCCEEEEECSSEEEEEEECCCSST-T--BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCEEEEEECCeEEEEEecccccc-C--CcchheEEEcCCCEEEEEeeccccHHHHHHHHHHHHHhhhhhcC
Confidence            45678899999999999999999999997744 3  46778999999999999999999999999999851         


Q ss_pred             ------------------------cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccCh
Q psy9489         161 ------------------------ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDY  216 (279)
Q Consensus       161 ------------------------~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~  216 (279)
                                              .+|+.....+.|++.+++.|+..|+.|++              ...+..+.|+|+ 
T Consensus       100 ~~i~~~~la~~l~~~~~~~t~~~~~RP~gv~~il~G~d~~g~~Ly~idp~G~~--------------~~~~~~aiG~gs-  164 (233)
T d1rypf_         100 RKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNV--------------TELYGTAIGARS-  164 (233)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCE--------------EEESEEEESTTH-
T ss_pred             CCCcHHHHHHHHHHHHHHHhcccccCCccceEEEEEEcCCCCEEEEEccccce--------------ecccEEEecCch-
Confidence                                    02332333444888888999999999987              667889999999 


Q ss_pred             hhHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHhh--ccCCCCccceEEEEEE
Q psy9489         217 ADFQYLNDIVKQKILDDDLHNDGFVLKPKSLHSWLTRVLYN--RRSQFDPLWINAFVAG  273 (279)
Q Consensus       217 aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~la~~isr~lys--~r~~~~P~~vs~ii~G  273 (279)
                         +.+..+|+.++.+.++    .+++.+.+.+..-+.+..  .|..+.+..+.+.+.+
T Consensus       165 ---~~a~~~Le~~~~~~~~----~dms~eeai~l~~~~l~~~~~~d~~~~~~iev~ii~  216 (233)
T d1rypf_         165 ---QGAKTYLERTLDTFIK----IDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVG  216 (233)
T ss_dssp             ---HHHHHHHHHHHHHHTT----CCSCHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEEE
T ss_pred             ---HHHHHHHHHHHhhccc----cCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEE
Confidence               7777777766643211    234555555555454542  2333445556665544

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=6e-19  Score=148.96  Aligned_cols=109  Identities=18%  Similarity=0.280  Sum_probs=103.4

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      ||+||++++||||+|+|++.++|.++..++.+|||+++++++++++|..+|++.+.+.++.+.+ .++..++.+++++.+
T Consensus         1 TT~igi~~~dgVvlaaD~~~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~~   79 (201)
T d1irul_           1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCR-IYELRNKERISVAAA   79 (201)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHH-HHHHHHSSCCCHHHH
T ss_pred             CeEEEEEECCEEEEEEcCccccCCEeecCCcccEEEeCCcEEEEEcCccchHHHHHHHHHHHHH-HHHHhcCCCCchhHH
Confidence            5899999999999999999999999999999999999999999999999999999999999988 788889999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++.+++.+|.+|  .+||+++++++|+|+++|
T Consensus        80 a~~l~~~~~~~~--~~p~~~~~lvaG~d~~~~  109 (201)
T d1irul_          80 SKLLANMVYQYK--GMGLSMGTMICGWDKRGP  109 (201)
T ss_dssp             HHHHHHHHHTTT--TSCCCBEEEEEEECSSSE
T ss_pred             HHHHHHHhhhcc--CCCceEEEEEEEEecCCc
Confidence            999999999877  679999999999998775

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=3.8e-19  Score=151.93  Aligned_cols=119  Identities=50%  Similarity=0.973  Sum_probs=109.5

Q ss_pred             cccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCC
Q psy9489         161 ITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGF  240 (279)
Q Consensus       161 ~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~  240 (279)
                      ..|+.+|+|+||++++|||++|+|++.+.|.++..++.+||+++++++.++.+|..+|++.+.+.++.+........+..
T Consensus         2 ~~~~~~GtTivgi~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (217)
T d1iru2_           2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH   81 (217)
T ss_dssp             CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCCcCcccEEEEEEECCEEEEEEcCCcccCCeeecCCcceEEEeCCCeEEEeccccHHHHHHHHHHHHHHHHhhhhcCCC
Confidence            36899999999999999999999999999999999999999999999999999999999999999988887445566788


Q ss_pred             CCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         241 VLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       241 ~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      +++++.+++.+++.+|++|...+|+++++++||+|+++|
T Consensus        82 ~~~v~~~a~~l~~~~y~~~~~~~p~~~~~li~G~d~~~~  120 (217)
T d1iru2_          82 SYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES  120 (217)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEE
T ss_pred             CCCHHHHHHHHHHHHHHhccccCcccceEEEEEEcCCCc
Confidence            999999999999999998878899999999999998654

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=1.8e-19  Score=147.77  Aligned_cols=141  Identities=11%  Similarity=0.026  Sum_probs=108.8

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEeeecCcccccccchhhhhccccc---------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKITP---------------  163 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~~~sG~~aD~~~l~~~l~~~~~p---------------  163 (279)
                      ||+|||+|+||||||||+|.|.|+++.+++.+||++|+++++++.+|..+|.+.+.+.+......               
T Consensus         1 TTivav~~~~gVviAaDtR~S~G~~i~~r~~~Ki~~i~~~~~~~~~g~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1m4ya_           1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAK   80 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEecCCcEEEEEeechhhHHHHHHHHHHHHHHhhccchhhHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999988776652110               


Q ss_pred             -------ccceeeEEEEEe-CCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         164 -------LTTGTSVLGLVF-NGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       164 -------i~~g~tvlgi~~-~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                             ............ ..+.++..|..+..              ..+++.+.|||+    .++++.|+.++++  +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~--------------~~~~~~a~GSGs----~~A~g~l~~~~~~--~  140 (171)
T d1m4ya_          81 DWRTDRVLRRLEALLLVADKENIFIISGNGEVIQ--------------PDDDAAAIGSGG----PYALAAAKALLRN--T  140 (171)
T ss_dssp             HHHHCTTGGGCCCEEEEECSSCEEEECTTSCEEC--------------CSSSEEEESTTH----HHHHHHHHHHHHH--C
T ss_pred             HHHHhhhhcccccccceecCCcceEEecCCceee--------------ecCCEEEEcchH----HHHHHHHHhhccC--C
Confidence                   001112222222 23444445665543              467899999999    9999999987763  2


Q ss_pred             cccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         236 HNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      ..++++|..+++..+..+++|+..
T Consensus       141 ~~~a~el~~~Ai~~A~e~dvyTg~  164 (171)
T d1m4ya_         141 DLSAREIVEKAMTIAGEICIYTNQ  164 (171)
T ss_dssp             CCCHHHHHHHHHHHHHHHCTTCCS
T ss_pred             CCCHHHHHHHHHHHHHhhceEcCC
Confidence            335778889999999999999864

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=8.8e-19  Score=148.23  Aligned_cols=110  Identities=22%  Similarity=0.316  Sum_probs=104.3

Q ss_pred             ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHH
Q psy9489         166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPK  245 (279)
Q Consensus       166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~  245 (279)
                      +|+|++|++++|||++|+|++.+++.++..++.+||+++++++.++++|..+|++.+.+.++.+.+ .++++++.+++++
T Consensus         6 nG~Tvigi~~~dgVvlaaD~r~s~g~~~~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~~~   84 (204)
T d1iruj_           6 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLN-LYELKEGRQIKPY   84 (204)
T ss_dssp             SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHH-HHHHHSSSCCCHH
T ss_pred             CCceEEEEEECCEEEEEECCCcccCCeeEcCcccEEEEeCCCeEEEeccCchHHHHHHHHHHHhhh-hhhhhcccccchH
Confidence            589999999999999999999999999999999999999999999999999999999999999998 7888999999999


Q ss_pred             HHHHHHHHHHhhccCCCCccceEEEEEEEeCCC
Q psy9489         246 SLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE  278 (279)
Q Consensus       246 ~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~  278 (279)
                      .+++.+++.+|.+|  ++||+|+++|||||+++
T Consensus        85 ~~a~~l~~~~~~~~--~~p~~~~~lvaG~D~~~  115 (204)
T d1iruj_          85 TLMSMVANLLYEKR--FGPYYTEPVIAGLDPKT  115 (204)
T ss_dssp             HHHHHHHHHHHTTT--TSCCSCCCEEEEECTTS
T ss_pred             HHHHHHHHHHHHhh--hccceeEEEEEEEcCCC
Confidence            99999999999876  67999999999999643

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.76  E-value=1.6e-18  Score=148.48  Aligned_cols=122  Identities=18%  Similarity=0.272  Sum_probs=110.5

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++.++++..|+++||++++|||++++|++.+ ++++..++.+||++++++++++.+|..+|++.+.+.++.+.. .++
T Consensus        11 QvEYa~~av~~G~t~vgi~~~dgVvlaad~r~~-~~~~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~   88 (221)
T d1yara1          11 QVEYAREAVKKGSTALGMKFANGVLLISDKKVR-SRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQ-QEK   88 (221)
T ss_dssp             HHHHHHHHHTTSCCEEEEEETTEEEEEECCCCC-CTTBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHhcCCcEEEEEeCCEEEEEEecccC-CcccccCccceEEEecCCceEEeeeccchHHHHHHHHHHHHH-HHH
Confidence            356677788899999999999999999999965 778888899999999999999999999999999999999998 788


Q ss_pred             cccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeCCCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      +.++.+++++.+++.++..++  .++..++||++++||||||++||
T Consensus        89 ~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rP~~~~~li~G~d~~gp  134 (221)
T d1yara1          89 VTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGP  134 (221)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCE
T ss_pred             HHcCCcchHHHHHHHHHHHHHHHhhhccCCCcceEEEEEEEecCCC
Confidence            889999999999999999885  45566899999999999998876

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.7e-18  Score=144.52  Aligned_cols=108  Identities=18%  Similarity=0.274  Sum_probs=101.6

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      +|+||++++|||++++|++.++|.++..++.+||++++++++++++|..+|++.+.+.++.+.+ .++++++.+++++.+
T Consensus         2 ~tiigi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~~~~~   80 (198)
T d1rypk_           2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQ-LYSIREDYELSPQAV   80 (198)
T ss_dssp             CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHH-HHHHHHTSCCCHHHH
T ss_pred             eEEEEEEECCEEEEEEcCCcccCCEeecCccceEEEecCCEEEEecCCcccHHHHHHHHHHHHH-HHHHHhCCCcchHHH
Confidence            4789999999999999999999999999999999999999999999999999999999999988 788889999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQN  276 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~  276 (279)
                      ++.+++.+|+.+.+.+||++++||||||+
T Consensus        81 ~~~i~~~~~~~~~~~~P~~~~~liaG~D~  109 (198)
T d1rypk_          81 SSFVRQELAKSIRSRRPYQVNVLIGGYDK  109 (198)
T ss_dssp             HHHHHHHHHHHTTSSSCCCEEEEEEEEET
T ss_pred             HHHHHHHHHHHHhcccccceEEEEEEEec
Confidence            99999999876555789999999999995

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=1.4e-18  Score=151.25  Aligned_cols=122  Identities=14%  Similarity=0.231  Sum_probs=109.7

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++.++++..|+++|||++++|||+++|++.+. +++..++.+||+++++++++++||..+|++.+.+.++.+.. .++
T Consensus        22 QvEYa~~av~~G~t~VGik~~dgVvlaad~~~~~-~~~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~   99 (245)
T d1irug_          22 QVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLS-KLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEAS-NFR   99 (245)
T ss_dssp             HHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSC-TTBCTTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHcCCcEEEEEeCCEEEEEEeccccc-cccccCccceEEEcCCCEEEEeccCchhHHHHHHHHHHHHH-HHH
Confidence            4567778899999999999999999999998766 55567888999999999999999999999999999999998 788


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeC-CCC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      +.++.+++++.+++.+++.+  |++++++|||+|++||||||+ ++|
T Consensus       100 ~~~g~~i~~~~la~~la~~~~~~t~~~~~rP~~vs~li~G~D~~~gp  146 (245)
T d1irug_         100 SNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGA  146 (245)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEE
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHhhccccccccceEEEEEEEcCCCCc
Confidence            88999999999999999876  567888999999999999995 455

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.74  E-value=3.8e-18  Score=143.60  Aligned_cols=109  Identities=18%  Similarity=0.300  Sum_probs=102.6

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      ||+|||+++|||++|+|++.+++.++.+++.+|||+++++++++.||..+|++.+.+.++.+.+ .+...++.+++++.+
T Consensus         1 TT~vgi~~~dgVvlaaD~r~s~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~~   79 (202)
T d1j2qh_           1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEAN-LYEIRRERKPTVRAI   79 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHSSCCCHHHH
T ss_pred             CcEEEEEECCEEEEEECCCcccCCeeccCccceEEEecCcEEEEecCcchhHHHHHHHHHHHhh-hhhhccCCCccHHHH
Confidence            5889999999999999999999999999999999999999999999999999999999999887 778888899999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++.+++.++++|  .+||++++++||+|+++|
T Consensus        80 a~~~~~~~~~~~--~~p~~~~~lvaG~d~~~~  109 (202)
T d1j2qh_          80 ATLTSNLLNSYR--YFPYLVQLLIGGIDSEGK  109 (202)
T ss_dssp             HHHHHHHHHHTT--TSCCCEEEEEEEEETTEE
T ss_pred             HHHHHHHHhhhc--ccceeeEEEEEEEcCCCc
Confidence            999999999887  579999999999998754

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=2.8e-18  Score=149.72  Aligned_cols=122  Identities=15%  Similarity=0.115  Sum_probs=112.0

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH  236 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~  236 (279)
                      +++.++++..|+++|||++++|||+++|++.+.+.++.+++.+|||++++++++++||..+|++.+.+.++.+.. .+.+
T Consensus        20 vEyA~kav~~G~tvvgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~~   98 (250)
T d1iruc_          20 VEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQ-RYLL   98 (250)
T ss_dssp             HHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHhcCCcEEEEEeCCEEEEEEeCccccCCcccCcccceEEECCCcEEEEeecccchHHHHHHHHHHHHH-HHHH
Confidence            577788999999999999999999999999999888888999999999999999999999999999999999998 7888


Q ss_pred             ccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeCC-CC
Q psy9489         237 NDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQNG-EP  279 (279)
Q Consensus       237 ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~~-~p  279 (279)
                      .++.+++++.+++.+++.++  +++..++||+|++||+|||++ ||
T Consensus        99 ~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~li~G~D~~~gp  144 (250)
T d1iruc_          99 QYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF  144 (250)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEE
T ss_pred             HcCCCcchHHHHHHHHHHHHHHhhhccCCcceEEEEEEEEcCCCCC
Confidence            89999999999999999885  445567899999999999964 44

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=5e-18  Score=145.22  Aligned_cols=108  Identities=18%  Similarity=0.304  Sum_probs=102.1

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      ||+|||+++|||++|+|++.++|.++..++.+||++++++++++++|..+|++.+.+.++.+++ .+.++++..++++.+
T Consensus         1 TTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~~   79 (220)
T d1irui_           1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLE-LHSLSTGRLPRVVTA   79 (220)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHH-HHHHHHCSCCCHHHH
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCEeecCCcccEEEecCcEEEEEccccHHHHHHHHHHHHHHH-HHHHhcCCCCCHHHH
Confidence            5899999999999999999999999999999999999999999999999999999999999988 788889999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++.+++.+|.+|   +|+++++|+||+|++||
T Consensus        80 a~~l~~~~y~~~---~p~~~~~ivaG~D~~g~  108 (220)
T d1irui_          80 NRMLKQMLFRYR---GYIGAALVLGGVDVTGP  108 (220)
T ss_dssp             HHHHHHHHHHTT---TCSCEEEEEEEECSSCE
T ss_pred             HHHHHhhhhhcc---cccceeEEEEEEeCCCc
Confidence            999999999765   59999999999998775

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=3.2e-18  Score=148.77  Aligned_cols=122  Identities=14%  Similarity=0.209  Sum_probs=112.7

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH  236 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~  236 (279)
                      +++.++++..|+|+|||++++||++++|++.+.+.++..++.+||+++++++.+++||..+|++.+.+.++.+.+ .+.+
T Consensus        21 veya~~ai~~G~T~vgi~~~dgVvlaad~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~   99 (244)
T d1rypc_          21 VEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQ-NYLK   99 (244)
T ss_dssp             HHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHhcCCCEEEEEeCCEEEEEEeCCccCCCcccCCccceEEEcCCCeEEEEecccCcHHHHHHHHHHHHH-HHHH
Confidence            677788999999999999999999999999999889889999999999999999999999999999999999998 7888


Q ss_pred             ccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCC-CC
Q psy9489         237 NDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNG-EP  279 (279)
Q Consensus       237 ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~-~p  279 (279)
                      +++.+++++.+++.+++.+  +.++.+++||++++||||+|++ +|
T Consensus       100 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~rP~~~~~ll~G~d~~~gp  145 (244)
T d1rypc_         100 TYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGY  145 (244)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEE
T ss_pred             HhCCCCCHHHHHHHHHHHHhhhhhccccCccceeEEEEEEecCCCc
Confidence            8999999999999999988  4566778999999999999964 44

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=5.1e-18  Score=147.22  Aligned_cols=122  Identities=15%  Similarity=0.186  Sum_probs=111.8

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH  236 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~  236 (279)
                      +++.++++..|+++|||++++||++++|++.+++.+....+.+||++++++++++.||..+|++.+.+.++.+.. .+++
T Consensus        18 vEya~kav~~G~tvIgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~   96 (241)
T d1rypd_          18 VEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQ-SHRL   96 (241)
T ss_dssp             HHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHcCCCEEEEEeCCEEEEEEEccccccCcccccccccEEEeCCCEEEEeeeccchHHHHHHHHHHHHH-HHHH
Confidence            577788888999999999999999999999999887778899999999999999999999999999999999998 7888


Q ss_pred             ccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeC--CCC
Q psy9489         237 NDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQN--GEP  279 (279)
Q Consensus       237 ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~--~~p  279 (279)
                      .++.+++++.+++.+++.++  +++.++||++|++||||||+  ++|
T Consensus        97 ~~~~~i~~~~la~~i~~~~~~~t~~~~~rP~~v~~li~G~d~~~~~p  143 (241)
T d1rypd_          97 TLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEP  143 (241)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSC
T ss_pred             HcCCCCCHHHHHHHHHHHHHHHhhccccCcccceEEEEEEccccCcc
Confidence            99999999999999999884  56667899999999999995  355

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

Probab=99.73  E-value=6.1e-19  Score=144.96  Aligned_cols=141  Identities=12%  Similarity=0.106  Sum_probs=99.2

Q ss_pred             ccEEEEEeCCeEEEEEeCCCccCCceeeCCCCceEEecCceEe-eecCcccccccchhhhhcccc---------------
Q psy9489          99 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTIL-GAGNDYADFQYLNDIVKQKIT---------------  162 (279)
Q Consensus        99 ~t~lgi~~~~gVvlaaD~r~~~~~~i~~~~~~Ki~~i~~~~~~-~~sG~~aD~~~l~~~l~~~~~---------------  162 (279)
                      ||+|||+|+||||||||+|.|.|+++.+++.+||++|++++++ +.+|...+.+.+.+..+...+               
T Consensus         1 TTivai~~~dGVVlAaDtRaS~G~~i~~r~~~Ki~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (173)
T d1g3ka_           1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAK   80 (173)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeEcCCcceEEEecCCcEEEEeeehhHhHHHHHHHHHHHHHhhcCcchhHHHHHHH
Confidence            7999999999999999999999999999999999999887555 555555555544444332110               


Q ss_pred             -------cccceeeEEEEEeCCcE-EEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccc
Q psy9489         163 -------PLTTGTSVLGLVFNGGV-ILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDD  234 (279)
Q Consensus       163 -------pi~~g~tvlgi~~~~gv-lia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~  234 (279)
                             .......+++...+++. ++..|..+++              ....+.+.|||+    .+++..++..++  +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~a~GSGs----~~A~~~l~~~~~--~  140 (173)
T d1g3ka_          81 DWRTDRALRKLEAMLIVADEKESLIITGIGDVVQP--------------EEDQILAIGSGG----NYALSAARALVE--N  140 (173)
T ss_dssp             HHHHSTTGGGCCCEEEEECSSCEEEEETTTEEECC--------------CTTCEEEESTTH----HHHHHHHHHHHH--H
T ss_pred             HHHHhhhhcccccccccccCCCcceecccCceEEe--------------cCCCEEEecchH----HHHHHHHHHhhh--c
Confidence                   00011222233333332 2233444333              456799999999    899999987774  4


Q ss_pred             ccccCCCCCHHHHHHHHHHHHhhcc
Q psy9489         235 LHNDGFVLKPKSLHSWLTRVLYNRR  259 (279)
Q Consensus       235 ~~ee~~~l~~~~la~~isr~lys~r  259 (279)
                      +.+++++|..+++..+..+++|+..
T Consensus       141 ~~~~A~ela~~Ai~~Aae~dvyTgd  165 (173)
T d1g3ka_         141 TELSAHEIVEKSLRIAGDICVFTNT  165 (173)
T ss_dssp             CCCCHHHHHHHHHHHHHHHCTTCCS
T ss_pred             CCCCHHHHHHHHHHHHHhhcEEcCC
Confidence            5668899999999999999999864

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=3e-18  Score=149.02  Aligned_cols=121  Identities=12%  Similarity=0.104  Sum_probs=109.0

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH  236 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~  236 (279)
                      +++.++++..|+|+||++++|||++++|++.+++.. ..++.+||++++++++++.+|..+|++.+.+.++.+.+ .+.+
T Consensus        20 vEya~kav~~G~t~igik~~dgVvlaad~~~~~~~~-~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~   97 (244)
T d1rypg_          20 VEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLL-VPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAA-SFKK   97 (244)
T ss_dssp             HHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTB-CTTTSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHcCCCEEEEEeCCEEEEEEecccCCCCc-cccccceEEEccCceEEEEccchhhHHHHHHHHHHHHH-HHHH
Confidence            467778889999999999999999999999888644 45667899999999999999999999999999999988 7888


Q ss_pred             ccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeCCCC
Q psy9489         237 NDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       237 ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      .++.+++++.+++.+++.++  ++++..|||+|++||||||++||
T Consensus        98 ~~~~~~~~~~la~~~~~~~~~~t~~~~~RP~~~~~iiaG~D~~gp  142 (244)
T d1rypg_          98 LYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGA  142 (244)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEE
T ss_pred             hcCCCCCHHHHHHHHHHHHHHhhcccccCCceEEEEEEEEeCCCC
Confidence            89999999999999999884  56667889999999999998775

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=8.9e-18  Score=141.77  Aligned_cols=107  Identities=16%  Similarity=0.275  Sum_probs=100.8

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      ||+||++++|||++|+|++.++|+++..++.+|||+++++++++.||..+|++.+.+.++.+.+ .+...++.+++++.+
T Consensus         1 TT~igi~~kdgVvia~D~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~~   79 (203)
T d1yarh1           1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELE-LYRLQRRVNMPIEAV   79 (203)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHSSCCCHHHH
T ss_pred             CcEEEEEECCEEEEEECCCcccCCEeecCCcccEEEecCCeeeecCCCcchHHHHHHHHHHHHH-HHHHhcCCCCcHHHH
Confidence            5889999999999999999999999999999999999999999999999999999999999888 778888999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNG  277 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~  277 (279)
                      ++.+++.+++.|  .+||++++++||+|++
T Consensus        80 a~~l~~~~~~~~--~~p~~~~~lvaG~d~~  107 (203)
T d1yarh1          80 ATLLSNMLNQVK--YMPYMVQLLVGGIDTA  107 (203)
T ss_dssp             HHHHHHHHHHTT--TSCCCEEEEEEEESSS
T ss_pred             HHHHHHHHHhhc--cCCccceeEEEEEcCC
Confidence            999999998877  6799999999999863

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=6.9e-18  Score=142.91  Aligned_cols=113  Identities=22%  Similarity=0.290  Sum_probs=102.4

Q ss_pred             ccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCC
Q psy9489         162 TPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFV  241 (279)
Q Consensus       162 ~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~  241 (279)
                      .++++|+|+|||+++|||++|+|++.+++.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++++++. 
T Consensus         4 ~~v~~GtTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~-~~~~~~~~-   81 (205)
T d1ryph_           4 GEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLE-LYTSQYGT-   81 (205)
T ss_dssp             TCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHH-HHHHHHSS-
T ss_pred             CcccCcceEEEEEECCEEEEEECCccccCceeeccccceEEEccCceEEeeccchhHHHHHHHHHHHHHH-HHHHHcCC-
Confidence            3578999999999999999999999999999999999999999999999999999999999999999987 67777774 


Q ss_pred             CCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeC-CCC
Q psy9489         242 LKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQN-GEP  279 (279)
Q Consensus       242 l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~-~~p  279 (279)
                      ..++.+++.+++.+|.+|   +||++++||||||+ ++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~---~p~~~~~lvaG~d~~~~p  117 (205)
T d1ryph_          82 PSTETAASVFKELCYENK---DNLTAGIIVAGYDDKNKG  117 (205)
T ss_dssp             CCHHHHHHHHHHHHHHTT---TTCCEEEEEEEEETTTEE
T ss_pred             ccHHHHHHHHHHHHHhCc---cCceEEEEEEeecCCCCc
Confidence            468899999999999876   69999999999996 444

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=3.6e-18  Score=148.38  Aligned_cols=121  Identities=12%  Similarity=0.168  Sum_probs=111.0

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH  236 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~  236 (279)
                      +++.++++..|+|+|||++++|||+++|++ +.+.++.+++.+||+++++++++++||..+|++.+.+.++.+++ .+.+
T Consensus        18 vEya~kav~~G~Tvvgik~~dgVvla~d~r-~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~   95 (243)
T d1irud_          18 VEYAQEAVKKGSTAVGVRGRDIVVLGVEKK-SVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQ-SHRL   95 (243)
T ss_dssp             HHHHHHHHHTSCCEEEECCSSEEEEEECCC-CCCSSSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHhcCCCEEEEEeCCEEEEEEecc-ccCcccCCCccccEEECCCCEEEEEEEchhhHHHHHHHHHHHHH-HHHH
Confidence            577778889999999999999999999999 45889999999999999999999999999999999999999998 7888


Q ss_pred             ccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCC-CC
Q psy9489         237 NDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNG-EP  279 (279)
Q Consensus       237 ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~-~p  279 (279)
                      .++.+++++.+++.+++.+  |+++.+.+|++|++||+|||+. +|
T Consensus        96 ~~~~~i~v~~la~~ls~~~~~~t~~~~~rp~~v~~li~G~D~~~~p  141 (243)
T d1irud_          96 TVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTP  141 (243)
T ss_dssp             HSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCE
T ss_pred             hcCCCccHHHHHHHHHHHHHHHHhcccCCccceEEEEEEEcCCCCC
Confidence            8999999999999999988  5677778999999999999864 55

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=1.2e-17  Score=141.04  Aligned_cols=106  Identities=22%  Similarity=0.234  Sum_probs=100.6

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      ||+||++++|||++++|++.++|.++..++.+||++++++++++.+|..+|++.+.+.++.+.+ .++.+++.+++++.+
T Consensus         1 TTivai~~~dgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~~~~~   79 (202)
T d1iruh_           1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLG-FHSIELNEPPLVHTA   79 (202)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHTSCCCHHHH
T ss_pred             CeEEEEEECCEEEEEECCccccCCeeecCCcceEEEcCCcEEEEeccchHHHHHHHHHHHHHHH-HHHHhcCCCCCHHHH
Confidence            5899999999999999999999999999999999999999999999999999999999999998 788889999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNG  277 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~  277 (279)
                      ++.+++.+|.+|   +|++++++++|+|++
T Consensus        80 a~~l~~~l~~~~---~p~~~~~lvaG~d~~  106 (202)
T d1iruh_          80 ASLFKEMCYRYR---EDLMAGIIIAGWDPQ  106 (202)
T ss_dssp             HHHHHHHHHHTT---TTCCEEEEEEEEETT
T ss_pred             HHHHHHHHHhhc---cceeEEEEEEEeecC
Confidence            999999999876   599999999999974

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=6.5e-18  Score=145.91  Aligned_cols=121  Identities=16%  Similarity=0.219  Sum_probs=107.8

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH  236 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~  236 (279)
                      +++.++++..|++++|++++|||++++|++.+.+ ++..++.+||++++++++++.||..+|++.+.+.++.+.. .+.+
T Consensus        17 vEYa~kav~~G~t~vgik~~dgVvlaad~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~   94 (234)
T d1irue_          17 VEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQ-NHWF   94 (234)
T ss_dssp             HHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCT-TBCTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHcCCCEEEEEeCCEEEEEEecCccCC-CcccCcccCEEEccCcEEEEEeeccchHHHHHHHHHHHHH-HHHH
Confidence            5777888999999999999999999999997764 5667888999999999999999999999999999999998 7888


Q ss_pred             ccCCCCCHHHHHHHHHHHHhh--cc-----CCCCccceEEEEEEEeCCCC
Q psy9489         237 NDGFVLKPKSLHSWLTRVLYN--RR-----SQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       237 ee~~~l~~~~la~~isr~lys--~r-----~~~~P~~vs~ii~G~D~~~p  279 (279)
                      .++.+++++.+++.+++.++.  ++     .+.+||+|++++||||++||
T Consensus        95 ~~~~~i~~~~la~~i~~~~~~~t~~~~~~~~~~rP~~~~~il~G~D~~gp  144 (234)
T d1irue_          95 TYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGP  144 (234)
T ss_dssp             HHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEE
T ss_pred             hhCCCCCHHHHHHHHHHHHHHHhhcccccccccccceEEEEEEEEcCCCC
Confidence            899999999999999998842  22     23789999999999998776

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=1.4e-17  Score=144.26  Aligned_cols=119  Identities=17%  Similarity=0.203  Sum_probs=107.0

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH  236 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~  236 (279)
                      +++..+++..|+++|||++++||++++|++.+.+..   .+.+||+++++++++++||..+|++.+.+.++.+.. .+++
T Consensus        19 vEYA~kav~~G~t~vgik~~dgVvlaad~~~~~~~~---~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~   94 (238)
T d1iruf_          19 IEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECL-DSRF   94 (238)
T ss_dssp             HHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHhcCCCEEEEEeCCEEEEEEecccccCCC---CccceEEEeCCceEEEEeccchHHHHHHHHHHHHHH-HHHH
Confidence            467778888999999999999999999999876533   356899999999999999999999999999999998 7888


Q ss_pred             ccCCCCCHHHHHHHHHHH--HhhccCCCCccceEEEEEEEeCCCC
Q psy9489         237 NDGFVLKPKSLHSWLTRV--LYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       237 ee~~~l~~~~la~~isr~--lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      .++.+++++.+++.++..  .|+++...+||+|++||||||++||
T Consensus        95 ~~~~~i~~~~l~~~l~~~~~~y~~~~~~rP~~v~~il~G~D~~gp  139 (238)
T d1iruf_          95 VFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGP  139 (238)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEE
T ss_pred             HcCCCcchHHHHHHHHHHHHHHhhccCCCcccceEEEEEEcCCCc
Confidence            999999999999999887  4777777899999999999998776

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.3e-17  Score=145.31  Aligned_cols=123  Identities=14%  Similarity=0.138  Sum_probs=108.6

Q ss_pred             hhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         156 IVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       156 ~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      .+++.++++..|+++||++++||||+|+|++.+. .++..++.+||+++++++++++||..+|++.+.+.++.....++.
T Consensus        20 QvEyA~kav~~G~tvvgi~~~dgVvlaad~r~~~-~~~~~~~~~ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~y~   98 (250)
T d1rypb_          20 QIDYALTAVKQGVTSLGIKATNGVVIATEKKSSS-PLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYK   98 (250)
T ss_dssp             HHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSC-SSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHcCCCEEEEEeCCEEEEEEecccCC-ccccccccceeEeccCCEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            3566778889999999999999999999999765 456678899999999999999999999999999999988765677


Q ss_pred             cccCCCCCHHHHHHHHHHHH--hhccCCCCccceEEEEEEEeCC-CC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVL--YNRRSQFDPLWINAFVAGMQNG-EP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~l--ys~r~~~~P~~vs~ii~G~D~~-~p  279 (279)
                      ..++.+++++.+++.+++.+  |.++++.+|++|+++|||||++ ||
T Consensus        99 ~~~~~~~~~~~la~~~~~~~~~~~~~~~~rp~~v~~li~G~D~~~gp  145 (250)
T d1rypb_          99 RIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGF  145 (250)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEE
T ss_pred             HhcCCCCCHHHHHHHHHHHHHHHhhhcCCcCeeEEEEEEEecCCCCC
Confidence            88899999999999999988  5677778999999999999963 44

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=1.1e-17  Score=145.42  Aligned_cols=121  Identities=9%  Similarity=0.107  Sum_probs=107.3

Q ss_pred             hhcccccccce-eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccc
Q psy9489         157 VKQKITPLTTG-TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDL  235 (279)
Q Consensus       157 l~~~~~pi~~g-~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~  235 (279)
                      +++.++++..| +|+|||++++|||+++|++.+ ++++..++.+||++++++++++.||..+|++.+.+.++.+.. .++
T Consensus        24 vEYA~kav~~gg~t~igIk~~dgVVlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~  101 (244)
T d1irua_          24 VEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAA-NWK  101 (244)
T ss_dssp             HHHHHHHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHhCCccEEEEEcCCEEEEEEecccc-cccccCCccceEEEecCCcEEEEecchHHHHHHHHHHHHHHH-HHH
Confidence            56677788776 589999999999999999976 577778889999999999999999999999999999999998 788


Q ss_pred             cccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeCC-CC
Q psy9489         236 HNDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQNG-EP  279 (279)
Q Consensus       236 ~ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~~-~p  279 (279)
                      +.++.+++++.+++.+++.++  .++++++||+|++||||||++ ||
T Consensus       102 ~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~D~~~g~  148 (244)
T d1irua_         102 YKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGP  148 (244)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEE
T ss_pred             HHcCCCCCchHHHHHHHHHHHHHhcccccCccceeeEEEEEcCCCCc
Confidence            888999999999999999884  456668999999999999963 44

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=2.4e-17  Score=142.23  Aligned_cols=119  Identities=13%  Similarity=0.089  Sum_probs=106.6

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH  236 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~  236 (279)
                      +++..+++..|+++||+++++|+++++|++.+.+ +  ..+.+||+.++++++++.||..+|++.+.+.++.+.+ .+++
T Consensus        21 vEyA~kav~~g~t~igi~~~dgvvlaad~~~~~~-l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~~   96 (233)
T d1rypf_          21 VEYALEAIKQGSVTVGLRSNTHAVLVALKRNADE-L--SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCN-YSSL   96 (233)
T ss_dssp             HHHHHHHHHTSCCEEEEECSSEEEEEEECCCSST-T--BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHcCCCEEEEEECCeEEEEEecccccc-C--CcchheEEEcCCCEEEEEeeccccHHHHHHHHHHHHH-hhhh
Confidence            6777888999999999999999999999998753 3  4667899999999999999999999999999999998 7888


Q ss_pred             ccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeCCCC
Q psy9489         237 NDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       237 ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      .++.+++++.+++.+++.++  ++....|||+|++||||||++||
T Consensus        97 ~~~~~i~~~~la~~l~~~~~~~t~~~~~RP~gv~~il~G~d~~g~  141 (233)
T d1rypf_          97 VFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGA  141 (233)
T ss_dssp             HHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEE
T ss_pred             hcCCCCcHHHHHHHHHHHHHHHhcccccCCccceEEEEEEcCCCC
Confidence            89999999999999999884  44555689999999999998765

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.2e-17  Score=144.82  Aligned_cols=119  Identities=13%  Similarity=0.209  Sum_probs=106.9

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH  236 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~  236 (279)
                      +++.++++..|+++||+++++||++++|++.+.+ +...++.+|||.++++++++.||..+|++.+.+.++.+.+ .+.+
T Consensus        16 veya~~a~~~G~t~Vgi~~~dgVvla~d~r~~~~-~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~   93 (242)
T d1rype_          16 VEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAV-THNL   93 (242)
T ss_dssp             HHHHHHHHTTSCCEEEEECSSCEEEEEECCCSST-TBCGGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHcCCCEEEEEeCCEEEEEEeCCccCc-CcccCccceEEEcCCCEEEEEeecchhHHHHHHHHHHHHH-HHHH
Confidence            5777888999999999999999999999998765 7778889999999999999999999999999999999998 7888


Q ss_pred             ccCCCCCHHHHHHHHHHHHhh--------ccCCCCccceEEEEEEEeCC
Q psy9489         237 NDGFVLKPKSLHSWLTRVLYN--------RRSQFDPLWINAFVAGMQNG  277 (279)
Q Consensus       237 ee~~~l~~~~la~~isr~lys--------~r~~~~P~~vs~ii~G~D~~  277 (279)
                      .++.+++++.+++.+++.++.        .|.+++||+|++||||+|++
T Consensus        94 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~rP~~~~~ii~G~D~~  142 (242)
T d1rype_          94 YYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDAD  142 (242)
T ss_dssp             HHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETT
T ss_pred             HcCCCCchhHHHHHHHHHHHHHhccccccchhccccceEEEEEEEeccc
Confidence            889999999999999987742        23457899999999999954

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.70  E-value=3.8e-17  Score=141.82  Aligned_cols=119  Identities=17%  Similarity=0.186  Sum_probs=107.9

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH  236 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~  236 (279)
                      +++.++++..|+|+|||++++|||+++|++.+++. ....+.+|||+++++++++.||..+|++.+.+.++.+.. .+.+
T Consensus        21 vEya~kav~~G~t~Igik~~dgVvlaad~r~~~~~-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~   98 (243)
T d1j2pa_          21 VEYAREAVKRGATAIGIKCKEGVILIADKRVGSKL-LEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQ-INRL   98 (243)
T ss_dssp             HHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTT-BCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHcCCCEEEEEECCEEEEEEecCccccC-ccccccccEeecCCcEEEEeeecccHHHHHHHHHHHHHH-HHHH
Confidence            57778889999999999999999999999988865 456788999999999999999999999999999999998 7888


Q ss_pred             ccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeCC
Q psy9489         237 NDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQNG  277 (279)
Q Consensus       237 ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~~  277 (279)
                      .++.+++++.+++.++..++  +++.+++||+|++|+||+|++
T Consensus        99 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~D~~  141 (243)
T d1j2pa_          99 TYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEV  141 (243)
T ss_dssp             HSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEESSS
T ss_pred             hhCCCCcHHHHHHHHHHHHHHHhhhccCCccceeEEEEEecCC
Confidence            89999999999999999885  456668899999999999863

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=6.5e-17  Score=137.38  Aligned_cols=107  Identities=20%  Similarity=0.292  Sum_probs=100.6

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      ||+||++++|||++++|++.++|.++.+++.+|||+++++++++++|..+|++.+.+.++.+.. .++++++.+++++.+
T Consensus         1 TT~iai~~kdgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~~   79 (212)
T d1rypl_           1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCR-LHELREKERISVAAA   79 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHH-HHHHHHSSCCCHHHH
T ss_pred             CeEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEeccchHHHHHHHHHHHHHHH-HHHHhcCCCCcHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999998 788888999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNG  277 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~  277 (279)
                      ++.+++.+|.+|  ..|++++.+++|+|+.
T Consensus        80 a~~ls~~~~~~~--~~p~~~~~~l~G~~~~  107 (212)
T d1rypl_          80 SKILSNLVYQYK--GAGLSMGTMICGYTRK  107 (212)
T ss_dssp             HHHHHHHHHHTT--TSCCCBEEEEEEEETT
T ss_pred             HHHHHHHHHHhc--cCCcceEeeeeEeecC
Confidence            999999999876  5799999999998863

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=6.8e-17  Score=137.95  Aligned_cols=114  Identities=19%  Similarity=0.280  Sum_probs=102.8

Q ss_pred             ccc-cceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccccc-C
Q psy9489         162 TPL-TTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHND-G  239 (279)
Q Consensus       162 ~pi-~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee-~  239 (279)
                      .|. .+|+|+|||+++++|++++|++.+.+.++..++.+||++++++++++.||..+|++.+.+.++.+.+ .+++.+ .
T Consensus         3 ~py~~nG~Tivgi~~~dgVviaaD~r~s~~~~i~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~   81 (222)
T d1ryp1_           3 NPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVK-WYHFDHND   81 (222)
T ss_dssp             CCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEECSTTCEEEEEESHHHHHHHHHHHHHHHH-HHHHHTTT
T ss_pred             CCccCCCcEEEEEEECCEEEEEECCCcccCCEeccCCcceEEEecCCEEEEeccChHHHHHHHHHHHHHhh-hhhhhcCC
Confidence            464 4899999999999999999999999999999999999999999999999999999999999999887 566554 4


Q ss_pred             CCCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCC
Q psy9489         240 FVLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE  278 (279)
Q Consensus       240 ~~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~  278 (279)
                      ..+.++.+++.+++.++.+|  ++||+++++|+|+|+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~--~~p~~~~~li~G~d~~~  118 (222)
T d1ryp1_          82 KKLSINSAARNIQHLLYGKR--FFPYYVHTIIAGLDEDG  118 (222)
T ss_dssp             CCCCHHHHHHHHHHHHHTTT--TSCCCEEEEEEEECTTS
T ss_pred             CCCcHHHHHHHHHHHHHhhh--hhhheeeeeEEEEeCCC
Confidence            67899999999999998877  78999999999999764

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=5.2e-17  Score=139.13  Aligned_cols=108  Identities=19%  Similarity=0.281  Sum_probs=100.6

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      ||+|||++++||++++|++.++|.++.+++.+||++++++++++++|..+|++.+.+.++.+.. .+++.++.++.++.+
T Consensus         1 TTiVgik~~dGVviaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~-~~~~~~~~~~~v~~~   79 (222)
T d1rypi_           1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIE-LHSLYTSREPRVVSA   79 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHTSCCCHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCceeecCCcccEEEEcCCEEEEecccchHHHHHHHHHHHHHH-HhhhhhCCCCcHHHH
Confidence            5899999999999999999999999999999999999999999999999999999999999887 677778889999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCCCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      ++.+++.+|..+   +|+++++++||+|++||
T Consensus        80 a~~l~~~~~~~~---~p~~~~~l~aG~d~~g~  108 (222)
T d1rypi_          80 LQMLKQHLFKYQ---GHIGAYLIVAGVDPTGS  108 (222)
T ss_dssp             HHHHHHHHHHTT---TCSCEEEEEEEEETTEE
T ss_pred             HHHHHHHHHhhh---hccceeEEEEEEcCCCc
Confidence            999999998764   69999999999998765

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=3e-17  Score=142.47  Aligned_cols=122  Identities=10%  Similarity=0.058  Sum_probs=107.4

Q ss_pred             hhhcccccccc-eeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccc
Q psy9489         156 IVKQKITPLTT-GTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDD  234 (279)
Q Consensus       156 ~l~~~~~pi~~-g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~  234 (279)
                      .+++.++++.. |+|+|||++++|||+++|++.+. +++..++.+||++++++++++.||..+|++.+.+.++.+.. .+
T Consensus        18 QvEYA~~av~~~g~T~igik~~dgVvlaad~r~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~   95 (243)
T d1rypa_          18 QVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPD-KLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAA-EF   95 (243)
T ss_dssp             HHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCC-TTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHccCceEEEEEcCCEEEEEEeccccc-cccccCcccceEecCCCEEEEEecCcHHHHHHHHHHHHHHH-HH
Confidence            35666777765 66899999999999999999764 78888999999999999999999999999999999999998 78


Q ss_pred             ccccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeCC-CC
Q psy9489         235 LHNDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQNG-EP  279 (279)
Q Consensus       235 ~~ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~~-~p  279 (279)
                      ++.++.+++++.+++.+++.++  +++...+||+|++||||||++ ||
T Consensus        96 ~~~~~~~~~~~~~a~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~g~  143 (243)
T d1rypa_          96 RYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGP  143 (243)
T ss_dssp             HHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEE
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHHHhhcccccCccceEEEEEEccCCCC
Confidence            8889999999999999998874  555668899999999999954 44

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=6.5e-17  Score=139.14  Aligned_cols=121  Identities=14%  Similarity=0.185  Sum_probs=109.4

Q ss_pred             hhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhccccccc
Q psy9489         157 VKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLH  236 (279)
Q Consensus       157 l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~  236 (279)
                      +++.++++..|+|+||++++|||++++|++.+++. +..++.+|||+++++++++.+|..+|++.+.+.++.+.+ .++.
T Consensus        21 veya~kav~~G~tvigik~~dgVvlaaD~r~~~~~-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~   98 (233)
T d1irub_          21 IEYALAAVAGGAPSVGIKAANGVVLATEKKQKSIL-YDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQ-QYYL   98 (233)
T ss_dssp             HHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSS-BCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHcCCCEEEEEeCCEEEEEEeCCcccCC-ccccccceEEEecCceEEEEeccchHHHHHHHHHHHHHH-HHHH
Confidence            57778889999999999999999999999988865 467889999999999999999999999999999999998 7788


Q ss_pred             ccCCCCCHHHHHHHHHHHHh--hccCCCCccceEEEEEEEeCCCC
Q psy9489         237 NDGFVLKPKSLHSWLTRVLY--NRRSQFDPLWINAFVAGMQNGEP  279 (279)
Q Consensus       237 ee~~~l~~~~la~~isr~ly--s~r~~~~P~~vs~ii~G~D~~~p  279 (279)
                      .++.+++++.+++.+++.++  ++...++|++++++++|+|+++|
T Consensus        99 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~~li~g~d~~~~  143 (233)
T d1irub_          99 VYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRP  143 (233)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSE
T ss_pred             HhCCCCCHHHHHHHHHHHHHHHhhccccccceEEEeeeecccCCc
Confidence            88999999999999999885  34445789999999999998876

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=1.6e-16  Score=133.74  Aligned_cols=107  Identities=22%  Similarity=0.316  Sum_probs=101.0

Q ss_pred             ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHH
Q psy9489         166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPK  245 (279)
Q Consensus       166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~  245 (279)
                      +|+|+|||+++|+|++|+|++.+++.++..++.+|||++ ++++++.+|..+|++.+.+.++.+.+ .++++++.+++++
T Consensus         7 nG~Tivgi~~~d~VvlaaD~r~~~~~~~~~~~~~Ki~~i-~~i~~~~~G~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~   84 (204)
T d1rypj_           7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMFRYKTN-LYKLKEERAIEPE   84 (204)
T ss_dssp             SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEE-TTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHSSCCCHH
T ss_pred             CCeEEEEEEECCEEEEEEcCCcccCCEeecCcccEEEEc-CCEEEEecCcchHHHHHHHHHHHHHH-HHHHhcCCCCcch
Confidence            689999999999999999999999999999999999999 58999999999999999999999988 7888999999999


Q ss_pred             HHHHHHHHHHhhccCCCCccceEEEEEEEeC
Q psy9489         246 SLHSWLTRVLYNRRSQFDPLWINAFVAGMQN  276 (279)
Q Consensus       246 ~la~~isr~lys~r~~~~P~~vs~ii~G~D~  276 (279)
                      .+++.+++.+|+++  .+|++++++++|||+
T Consensus        85 ~la~~l~~~l~~~~--~~p~~v~~li~G~d~  113 (204)
T d1rypj_          85 TFTQLVSSSLYERR--FGPYFVGPVVAGINS  113 (204)
T ss_dssp             HHHHHHHHHHHTTT--TSCCCEEEEEEEECT
T ss_pred             HHHHHHHHHHHhhc--ccceeeeEEEEEEec
Confidence            99999999999876  579999999999985

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=2.1e-16  Score=133.28  Aligned_cols=114  Identities=20%  Similarity=0.393  Sum_probs=105.9

Q ss_pred             cccc-ceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCC
Q psy9489         162 TPLT-TGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGF  240 (279)
Q Consensus       162 ~pi~-~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~  240 (279)
                      .|+. +|+|+|||+++|+|++|+|++.++|.++..++.+||+++++++.++.+|..+|++.+...++.+.+ .+++++..
T Consensus         3 ~p~~~nG~Tivai~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~-~~~~~~~~   81 (213)
T d1iru1_           3 SPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLK-MYKHSNNK   81 (213)
T ss_dssp             CSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHSS
T ss_pred             CCccCCCcEEEEEEECCEEEEEECCccccCceeeccccCEEEEcCCCEEEEecCccchHHHHHHHHHHHHH-HHHHhhCC
Confidence            4644 899999999999999999999999999999999999999999999999999999999999999998 77888999


Q ss_pred             CCCHHHHHHHHHHHHhhccCCCCccceEEEEEEEeCCC
Q psy9489         241 VLKPKSLHSWLTRVLYNRRSQFDPLWINAFVAGMQNGE  278 (279)
Q Consensus       241 ~l~~~~la~~isr~lys~r~~~~P~~vs~ii~G~D~~~  278 (279)
                      +++++.+++.+++.++.++  .+|++++.+++|+|.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~d~~~  117 (213)
T d1iru1_          82 AMTTGAIAAMLSTILYSRR--FFPYYVYNIIGGLDEEG  117 (213)
T ss_dssp             CCCHHHHHHHHHHHHHTTT--TSCCCEEEEEEEECTTS
T ss_pred             chhHHHHHHHHHHHHHHHH--hhhcccccceEEEecCC
Confidence            9999999999999999876  67999999999999654

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=99.64  E-value=2.2e-16  Score=135.65  Aligned_cols=116  Identities=17%  Similarity=0.143  Sum_probs=96.8

Q ss_pred             cchhhhhcccccccceeeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcc
Q psy9489         152 YLNDIVKQKITPLTTGTSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKIL  231 (279)
Q Consensus       152 ~l~~~l~~~~~pi~~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~  231 (279)
                      .+.+.+++..++++.|+|+||+++++|||+++|++.+        +.+||+.++++++++.+|..+|++.+.+.++.+..
T Consensus         4 ~~~~q~eyA~~av~~GtT~vgi~~~~GVvlaad~r~~--------s~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~   75 (227)
T d1q5qa_           4 IMRDRSELARKGIARGRSVVVLTFRDGVLFVAENPST--------ALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHAD   75 (227)
T ss_dssp             HHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCSCS--------SSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred             hhHhHHHHHHHHHhcCCCEEEEEECCEEEEEEccCCC--------CcceEEEecCceEEEecCchHHHHHHHHHHHHHHH
Confidence            3456677778889999999999999999999999853        36899999999999999999999999999999887


Q ss_pred             cccccccC-CCCCHHHHHHHHHHHH-hhccCCCCccceEEEEEEEeC
Q psy9489         232 DDDLHNDG-FVLKPKSLHSWLTRVL-YNRRSQFDPLWINAFVAGMQN  276 (279)
Q Consensus       232 ~~~~~ee~-~~l~~~~la~~isr~l-ys~r~~~~P~~vs~ii~G~D~  276 (279)
                       .+.+..+ .+++.+.+++.+++.+ +.+..+++||+|++||||||.
T Consensus        76 -~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~rP~gvs~lvaG~D~  121 (227)
T d1q5qa_          76 -MRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGR  121 (227)
T ss_dssp             -HHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCC
T ss_pred             -HHHHHhCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEEec
Confidence             5565555 4688999988888764 222223689999999999985

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=1.5e-15  Score=126.06  Aligned_cols=109  Identities=15%  Similarity=0.228  Sum_probs=101.9

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      ++++||+++|+|++++|++.+.|.++.+++.+||++++++++++.+|..+|++.+...++.+.+ .+..++..+++++.+
T Consensus         2 t~ivgi~~kdgVviaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~~G~~aD~~~l~~~~~~~~~-~~~~~~~~~~~~~~~   80 (199)
T d1iruk_           2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQ-LYKMRNGYELSPTAA   80 (199)
T ss_dssp             CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHH-HHHHHHSSCCCHHHH
T ss_pred             eEEEEEEECCEEEEEECCCccCCCeeecCCcceEEEecCcEEEEecccchHHHHHHHHHHHHhh-hhhhhcCCcCcHHHH
Confidence            4689999999999999999999999999999999999999999999999999999999999988 788889999999999


Q ss_pred             HHHHHHHHhhccCCCCccceEEEEEEEeCC
Q psy9489         248 HSWLTRVLYNRRSQFDPLWINAFVAGMQNG  277 (279)
Q Consensus       248 a~~isr~lys~r~~~~P~~vs~ii~G~D~~  277 (279)
                      ++.+.+.++..+...+|++++++++|+|++
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~aG~d~~  110 (199)
T d1iruk_          81 ANFTRRNLADCLRSRTPYHVNLLLAGYDEH  110 (199)
T ss_dssp             HHHHHHHHHHHHTSSSCCCEEEEEEEEETT
T ss_pred             HHHHHHHHHHHhhccCCcceeeeecceecc
Confidence            999999998766667899999999999974

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=99.55  E-value=1.1e-14  Score=123.85  Aligned_cols=108  Identities=16%  Similarity=0.260  Sum_probs=99.2

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcccccccccCCCCCHHHH
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKILDDDLHNDGFVLKPKSL  247 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~~~~~~ee~~~l~~~~l  247 (279)
                      ||+|||+++|||++|+|++.++|.++..++.+||++++++++++++|..+|++.+.+.++.+.+ .+.+.++.+++++.+
T Consensus         1 TTivgi~~kdgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~~~   79 (224)
T d1q5qh_           1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELE-HYEKIEGVPLTFDGK   79 (224)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH-HHHHHHSSCCCHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeecCCcceEEEeCCcEEEEecccchHHHHHHHHHHHHhH-HHHHhhCCCccHHHH
Confidence            5899999999999999999999999999999999999999999999999999999999999988 788889999999999


Q ss_pred             HHHHHHHHhhcc-CCCCccceEEEEEEEeC
Q psy9489         248 HSWLTRVLYNRR-SQFDPLWINAFVAGMQN  276 (279)
Q Consensus       248 a~~isr~lys~r-~~~~P~~vs~ii~G~D~  276 (279)
                      ++.+++.+|..+ ..++|+++.++++|++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  109 (224)
T d1q5qh_          80 ANRLASMVRGNLGAAMQGLAVVPLLVGYDL  109 (224)
T ss_dssp             HHHHHHHHHTTHHHHTTTCCEEEEEEEECT
T ss_pred             HHHHHHHHHHhhcccccCccceeeEEEeec
Confidence            999999997542 33679999999999874

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

Probab=98.93  E-value=3.9e-09  Score=85.25  Aligned_cols=63  Identities=17%  Similarity=0.283  Sum_probs=50.9

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEeccc-EEEEeccChhhHHHHHHHHHhhc
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKF-TILGAGNDYADFQYLNDIVKQKI  230 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~-~~~~gSG~~aD~~~l~~~l~~~~  230 (279)
                      ||++|++++||||+|+|++.|+|+++.+++.+||++++++ +.++++|...+.+.+....+...
T Consensus         1 TTivai~~~dGVVlAaDtRaS~G~~i~~r~~~Ki~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   64 (173)
T d1g3ka_           1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKL   64 (173)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeEcCCcceEEEecCCcEEEEeeehhHhHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999876 55566666666555555444333

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

Probab=98.86  E-value=1e-09  Score=89.46  Aligned_cols=66  Identities=14%  Similarity=0.239  Sum_probs=57.9

Q ss_pred             ceeeEEEEEeCCcEEEEEcCCCccCceeeecC-CCceEEecc-cEEEEeccChhhHHHHHHHHHhhcc
Q psy9489         166 TGTSVLGLVFNGGVILAADSAGYYGSMMRFND-CPRIMQINK-FTILGAGNDYADFQYLNDIVKQKIL  231 (279)
Q Consensus       166 ~g~tvlgi~~~~gvlia~D~~gs~g~li~~~~-~~kI~~i~~-~~~~~gSG~~aD~~~l~~~l~~~~~  231 (279)
                      +|+|++|++++|||++|+|++.|+|+++..++ .+|++.+.+ .++++++|..+|.+.+...++.+.+
T Consensus         4 ~GTTivai~~~dGVvlAaDtR~S~G~~i~~~~~~~ki~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   71 (180)
T d2z3ba1           4 HATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLE   71 (180)
T ss_dssp             CCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEECCEEEEEECCcccCCceeEecccceEEEEecccceecccchHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999888775 678888866 4888889999999999988877765

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

Probab=98.85  E-value=7.5e-09  Score=83.27  Aligned_cols=64  Identities=14%  Similarity=0.095  Sum_probs=59.1

Q ss_pred             eeEEEEEeCCcEEEEEcCCCccCceeeecCCCceEEecccEEEEeccChhhHHHHHHHHHhhcc
Q psy9489         168 TSVLGLVFNGGVILAADSAGYYGSMMRFNDCPRIMQINKFTILGAGNDYADFQYLNDIVKQKIL  231 (279)
Q Consensus       168 ~tvlgi~~~~gvlia~D~~gs~g~li~~~~~~kI~~i~~~~~~~gSG~~aD~~~l~~~l~~~~~  231 (279)
                      ||++|++++|||++|+|++.++|+++.+++.+|+++++++++++++|..+|.+.....++....
T Consensus         1 TTivav~~~~gVviAaDtR~S~G~~i~~r~~~Ki~~i~~~~~~~~~g~~ad~~~~~~~~~~~~~   64 (171)
T d1m4ya_           1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKL   64 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEecCCcEEEEEeechhhHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999999988877766554