Psyllid ID: psy950

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
Protein Sequence
MGSTLALASLIWAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILSRGKDEKAKIENEQDLGRKR
Secondary Structure (PSIPRED)
cccEEEEEccccEEEEEEEEcccccEEEEEccccccccEEEccccEEEEEEccccccEEEEEccccccEEEEEccccccEEEEEEccccEEEEEEcccccEEEEEcccccEEEEcccccccEEEEEEccEEEEEEcccccEEEEEcccccccEEccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccEEEcccccccccccccEEccccEEEEEEEccEEEEEcccccccccEEEEcccccEEEEEEEccccEEEEEEcccccEEEEccccccEEEccccccccEEEEEcccccEEEEcccccEEEEEccccccEEEEccccccEEEEEEcccccEEEEEccccccEEEEEccccccccEEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccEEccEEEEEEcccccEEEEEccccccEEEEcccccEEEEEEccccccEEEEEcccccEEEEEEcccccccEEEEEccccEEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEccEEEEEccccccEEEEEccccccEEEEEEEEccccccccEEEEcccccccccccccccccccccccEEEccccccccccccEEEEccccEEEcccccEccccccEEEEEEcccEEEEEccccccccEEEEccccccEEEEEEEccccEEEEEEccEEEEEEccccccEEEEEccccccccEEEEEccccEEEEEccccEEEEEEccccEEEEEcccccccEEEEcccccEEEEEcccccccccHEEEEcccccccEEEEEccccccEEEEEcccccccc
Coil and Loop (DISEMBL)
MGSTLALASLIWAIRLALRLLKKKKKLKTsfrsanttspfsplprllywidygqyprigksyldgskwtsivsngismprdltidmqthdvyWVDAKLDLIQKISynggnrqiirrnlpnpmgiavhksdvywvDRNLRTVYKASKlastnitlptpirtglsglrdiaifdivnqppdennpcfrtgnggceqlcfsypvefpqnklhykcdcatgtpsasdpkkcttmdeYLVFSTRTEIRalhldptltavpfktvsnltnvvgvefdyaddkilftqirpwakiawipttnpssassnltnvvgvefdyaddkilftqirpwakiawipttnpssassnltnvvgvefdyaddkilftqirpwakiawipttnpssasVNTILSrgkdekakIENEQDLGRKR
Flexible Loop (DISEMBL)
MGSTLALASLIWAIRLALRLLKKKKklktsfrsanttspfsplprlLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKasklastnitlptpirtGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCAtgtpsasdpkkcTTMDEYLVFSTRTEIRALhldptltavpfktvsNLTNVVGVEFDYADDKILFTQIRPWAKIAWIpttnpssassnLTNVVGVEFDYADDKILFTQIRPWAKIAWIpttnpssassnLTNVVGVEFDYADDKILFTQIRPWAKiawipttnpssasvntilsrgkdekakieneqdlgrkr
Low Complexity Region (SEG)
MGSTlalasliwairlalrllkkkkklkTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILSRGKDEKAKIENEQDLGRKR
Disordered region (IsUnstruct)
******************************************LPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGT*******KCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTN*****SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTN*****SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPT********************************
Disordered Region (DISOPRED)
MGSTLALASLIWAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADDKILFTQIRPWAK**************NTILSRGKDEKAKIEN*QD*****
Disordered Region (DISEMBL)
MGSTLALASLIWAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILS*******************
Disordered Region (DISPRO)
MGSTLALASLIWAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILSRGKDEKAKIENEQD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSTLALASLIWAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILSRGKDEKAKIENEQDLGRKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	407	2.2.26 [Sep-21-2011]
P98158	4660	Low-density lipoprotein r	yes	N/A	0.663	0.057	0.376	3e-49
A2ARV4	4660	Low-density lipoprotein r	yes	N/A	0.668	0.058	0.385	3e-49
P98164	4655	Low-density lipoprotein r	yes	N/A	0.665	0.058	0.391	3e-47
Q04833	4753	Low-density lipoprotein r	yes	N/A	0.764	0.065	0.299	7e-33
Q9QYP1	1905	Low-density lipoprotein r	no	N/A	0.550	0.117	0.323	2e-29
O75096	1905	Low-density lipoprotein r	no	N/A	0.550	0.117	0.315	5e-29
Q8VI56	1905	Low-density lipoprotein r	no	N/A	0.550	0.117	0.319	1e-28
O88572	1613	Low-density lipoprotein r	no	N/A	0.565	0.142	0.303	7e-28
O75581	1613	Low-density lipoprotein r	no	N/A	0.565	0.142	0.295	1e-26
Q07954	4544	Prolow-density lipoprotei	no	N/A	0.560	0.050	0.322	1e-26

>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus GN=Lrp2 PE=1 SV=1

 Score =  196 bits (498), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 111/295 (37%), Positives = 170/295 (57%), Gaps = 25/295 (8%)

Query: 42   PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
            P  R L+W DYGQ P+I +S+LD +  T +VS GI  PR L +D  T  +YWVD  LDLI
Sbjct: 2200 PKHRYLFWADYGQKPKIERSFLDCTNRTVLVSEGIVTPRGLAMDHDTGYIYWVDDSLDLI 2259

Query: 102  QKISYNGGNRQIIR--RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
             +I  +GG  Q++R     P P GI V    + WVDRNL+ V++ASK    N   P  IR
Sbjct: 2260 ARIHLDGGESQVVRYGSRYPTPYGITVFGESIIWVDRNLKKVFQASK-QPGNTDPPVVIR 2318

Query: 160  TGLSGLRDIAIFDIVNQP--PDE--NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCA 215
              ++ LRD+ IFD   QP  P E  NNPC ++ NGGC   CF+ P E P      +C CA
Sbjct: 2319 DKINLLRDVTIFDEHAQPLSPAELNNNPCLQS-NGGCSHFCFALP-ELPTP----RCGCA 2372

Query: 216  TGTPSASDPKKC-TTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYAD 274
             GT   +D K C T+ +++L++S    +R+LH DP   ++PF+ +S     + +++D  +
Sbjct: 2373 FGT-LGNDGKSCATSQEDFLIYSLNNSLRSLHFDPRDHSLPFQVISVAGTAIALDYDRRN 2431

Query: 275  DKILFTQ----IRPWAKIAWIP----TTNPSSASSNLTNVVGVEFDYADDKILFT 321
            ++I FTQ    +R   +I+++     +++P+   SN+    G+ FD+ + +I ++
Sbjct: 2432 NRIFFTQKLNSLR--GQISYVSLYSGSSSPTVLLSNIGVTDGIAFDWINRRIYYS 2484

Acts together with cubilin to mediate HDL endocytosis (By similarity). Receptor-mediated uptake of polybasic drugs such as aprotinin, aminoglycosides and polymyxin B.
Rattus norvegicus (taxid: 10116)

>sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related protein 2 OS=Mus musculus GN=Lrp2 PE=1 SV=1

 Score =  196 bits (497), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 113/293 (38%), Positives = 168/293 (57%), Gaps = 21/293 (7%)

Query: 42   PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
            P  R L+W DYGQ P+I +S+LD +  T +VS GI  PR L +D  T  +YWVD  LD+I
Sbjct: 2200 PKHRYLFWADYGQKPKIERSFLDCTNRTVLVSEGIVTPRGLAVDHDTGYIYWVDDSLDII 2259

Query: 102  QKISYNGGNRQIIR--RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
             +I  +GG  Q++R     P P GI V    + WVDRNLR V++ASK    N   PT IR
Sbjct: 2260 ARIHRDGGESQVVRYGSRYPTPYGITVFGESIIWVDRNLRKVFQASK-QPGNTDPPTVIR 2318

Query: 160  TGLSGLRDIAIFDIVNQP--PDE--NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCA 215
              ++ LRD+ IFD   QP  P E  NNPC ++ NGGC   CF+ P E P      KC CA
Sbjct: 2319 DSINLLRDVTIFDEHVQPLSPAELNNNPCLQS-NGGCSHFCFALP-ELPTP----KCGCA 2372

Query: 216  TGTPSASDPKKC-TTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYAD 274
             GT    D K C T+ +++L++S    +R+LH DP    +PF+ +S     + +++D  +
Sbjct: 2373 FGTLE-DDGKNCATSREDFLIYSLNNSLRSLHFDPQDHNLPFQAISVEGMAIALDYDRRN 2431

Query: 275  DKILFTQ-IRPW-AKIAWIP----TTNPSSASSNLTNVVGVEFDYADDKILFT 321
            ++I FTQ + P   +I+++      ++P+   SN+    G+ FD+ + +I ++
Sbjct: 2432 NRIFFTQKLNPIRGQISYVNLYSGASSPTILLSNIGVTDGIAFDWINRRIYYS 2484

Acts together with cubilin to mediate HDL endocytosis.

Mus musculus (taxid: 10090)

>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3

 Score =  189 bits (480), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/294 (39%), Positives = 166/294 (56%), Gaps = 23/294 (7%)

Query: 42   PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
            P  R L+W DYGQ P+I +S+LD +  T +VS GI  PR L +D     VYWVD  LD+I
Sbjct: 2199 PKNRYLFWADYGQRPKIERSFLDCTNRTVLVSEGIVTPRGLAVDRSDGYVYWVDDSLDII 2258

Query: 102  QKISYNGGNRQIIR--RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
             +I  NG N ++IR     P P GI V ++ + WVDRNL+ +++ASK    N   PT IR
Sbjct: 2259 ARIRINGENSEVIRYGSRYPTPYGITVFENSIIWVDRNLKKIFQASK-EPENTEPPTVIR 2317

Query: 160  TGLSGLRDIAIFDIVNQP--PDE--NNPCFRTGNGGCEQLCFSYPVEFPQNKLHY-KCDC 214
              ++ LRD+ IFD   QP  P E  NNPC    NGGC  LCF+ P       LH  KCDC
Sbjct: 2318 DNINWLRDVTIFDKQVQPRSPAEVNNNPCLEN-NGGCSHLCFALP------GLHTPKCDC 2370

Query: 215  ATGTPSASDPKKCT-TMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYA 273
            A GT   SD K C  + + +L+F+    +R+LHLDP   + PF+T++    V+ +++D  
Sbjct: 2371 AFGTLQ-SDGKNCAISTENFLIFALSNSLRSLHLDPENHSPPFQTINVERTVMSLDYDSV 2429

Query: 274  DDKILFTQ--IRPWAKIAWIPTTN----PSSASSNLTNVVGVEFDYADDKILFT 321
             D+I FTQ       +I++   ++    P+  +S +    G+ FD+   +I ++
Sbjct: 2430 SDRIYFTQNLASGVGQISYATLSSGIHTPTVIASGIGTADGIAFDWITRRIYYS 2483

Acts together with cubilin to mediate HDL endocytosis (By similarity). May participate in regulation of parathyroid-hormone and para-thyroid-hormone-related protein release.

Homo sapiens (taxid: 9606)

>sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related protein OS=Caenorhabditis elegans GN=lrp-1 PE=1 SV=1

 Score =  141 bits (356), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 175/361 (48%), Gaps = 50/361 (13%)

Query: 26   KLKTSFR----SANTTSPFS----PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGIS 77
            KL  ++R    +  T +P S    P+ R LYW D GQ P I +S+LDGS+   IVS+GI+
Sbjct: 2233 KLDGTYRKILLTTKTETPSSIAVDPVSRYLYWADQGQKPTIQRSFLDGSRREVIVSSGIA 2292

Query: 78   MPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRN 137
             P DL +D+ +  +YW DAK+D I ++   GG  +++R ++ +  G+A+H  ++YW D  
Sbjct: 2293 EPTDLVVDVASKMIYWSDAKMDGIYRVRSTGGTPELVRSDIASAAGVALHGQNMYWTDNR 2352

Query: 138  LRTVYKA-SKLASTNITL-PTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGN---GGC 192
            L  +++A SK   T++ L PT +   L  + D+A+F   NQP   ++PC  T N     C
Sbjct: 2353 LEKLFRATSKPNQTSLLLSPTTVAASLKDIGDVAVFSSNNQPR-ASSPCQITDNLRKSPC 2411

Query: 193  EQLCFSYP-VEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTL 251
             QLCF+ P  + P       C CA G       + C   D Y++FS   +I  + ++P +
Sbjct: 2412 TQLCFATPGTQTP------TCSCARGVLKG---RTCEEPDTYIMFSDGDKIIDVAIEPDV 2462

Query: 252  TAV-----PFKTVSNLTNVVGVEFDYADDKILFTQIRP-WAKIAWIPTTNPSS------- 298
             A      PF  +SNL      + D    ++ F    P    I+W    N  +       
Sbjct: 2463 KASRPLKDPFPEISNLQT---FDVDVNLRRVYFVVESPVGVNISWFSMNNAENPRLVFGA 2519

Query: 299  ----ASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDY 354
                 +  + ++  ++ D+   KI FT  R   K+  I T     A  +L+ +   ++ Y
Sbjct: 2520 SKQPHAKEIRHISDMKLDWLTQKIYFTTGR-GGKVMAIDT-----AGEHLSTIASGDWTY 2573

Query: 355  A 355
            A
Sbjct: 2574 A 2574

May act as a receptor for the endocytosis of extracellular ligands such as chylomicron remnants, protease-inhibitor complexes and vitellogenin.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9QYP1|LRP4_RAT Low-density lipoprotein receptor-related protein 4 OS=Rattus norvegicus GN=Lrp4 PE=1 SV=2

 Score =  130 bits (327), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 117/238 (49%), Gaps = 14/238 (5%)

Query: 46   LLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKIS 105
             +YW D+G+  ++ +S +DGS  T +++N +  P  LT+D  +  + W DA  + I+   
Sbjct: 1180 FMYWTDWGENAKLERSGMDGSDRTVLINNNLGWPNGLTVDKTSSQLLWADAHTERIEVAD 1239

Query: 106  YNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGL 165
             NG NR  +   + +P G+ +  S +YW D   R++++A K   +N+ L   +R+ L GL
Sbjct: 1240 LNGANRHTLVSPVQHPYGLTLLDSYIYWTDWQTRSIHRADKSTGSNVIL---VRSNLPGL 1296

Query: 166  RDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPK 225
             DI   D   QP   N    R  NGGC  LC   P  F        C C TG     D K
Sbjct: 1297 MDIQAVDRA-QPLGFNKCGSR--NGGCSHLCLPRPSGF-------SCACPTGIQLKGDGK 1346

Query: 226  KCTTMDE-YLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQI 282
             C    E YL+FS+R  IR + LD          V  L NV+ +++D  D K+ +T +
Sbjct: 1347 TCDPSPETYLLFSSRGSIRRISLDTDDHTDVHVPVPGLNNVISLDYDSVDGKVYYTDV 1404

Mediates SOST-dependent inhibition of bone formation (By similarity). Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling (By similarity). Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Rattus norvegicus (taxid: 10116)

>sp|O75096|LRP4_HUMAN Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4

 Score =  129 bits (324), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 117/238 (49%), Gaps = 14/238 (5%)

Query: 46   LLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKIS 105
             +YW D+G+  ++ +S +DGS    +++N +  P  LT+D  +  + W DA  + I+   
Sbjct: 1180 FMYWTDWGENAKLERSGMDGSDRAVLINNNLGWPNGLTVDKASSQLLWADAHTERIEAAD 1239

Query: 106  YNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGL 165
             NG NR  +   + +P G+ +  S +YW D   R++++A K   +N+ L   +R+ L GL
Sbjct: 1240 LNGANRHTLVSPVQHPYGLTLLDSYIYWTDWQTRSIHRADKGTGSNVIL---VRSNLPGL 1296

Query: 166  RDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPK 225
             D+   D   QP   N    R  NGGC  LC   P  F        C C TG     D K
Sbjct: 1297 MDMQAVDRA-QPLGFNKCGSR--NGGCSHLCLPRPSGF-------SCACPTGIQLKGDGK 1346

Query: 226  KCTTMDE-YLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQI 282
             C    E YL+FS+R  IR + LD +        V  L NV+ +++D  D K+ +T +
Sbjct: 1347 TCDPSPETYLLFSSRGSIRRISLDTSDHTDVHVPVPELNNVISLDYDSVDGKVYYTDV 1404

Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q8VI56|LRP4_MOUSE Low-density lipoprotein receptor-related protein 4 OS=Mus musculus GN=Lrp4 PE=1 SV=3

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 14/238 (5%)

Query: 46   LLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKIS 105
             +YW D+G+  ++ +S +DGS  T +++N +  P  LT+D  +  + W DA  + I+   
Sbjct: 1180 FMYWTDWGENAKLERSGMDGSDRTVLINNNLGWPNGLTVDKTSSQLLWADAHTERIEVAD 1239

Query: 106  YNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGL 165
             NG NR  +   + +P G+ +  S +YW D   R++++A K   +N+ L   +R+ L GL
Sbjct: 1240 LNGANRHTLVSPVQHPYGLTLLDSYIYWTDWQTRSIHRADKSTGSNVIL---VRSNLPGL 1296

Query: 166  RDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPK 225
             DI   D   QP   N    R  NGGC  LC   P  F        C C TG     D K
Sbjct: 1297 MDIQAVDRA-QPLGFNKCGSR--NGGCSHLCLPRPSGF-------SCACPTGIQLKGDRK 1346

Query: 226  KCTTMDE-YLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQI 282
             C    E YL+FS+R  IR + LD          V  L NV+ +++D    K+ +T +
Sbjct: 1347 TCDPSPETYLLFSSRGSIRRISLDTDDHTDVHVPVPGLNNVISLDYDSVHGKVYYTDV 1404

Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Mus musculus (taxid: 10090)

>sp|O88572|LRP6_MOUSE Low-density lipoprotein receptor-related protein 6 OS=Mus musculus GN=Lrp6 PE=1 SV=1

 Score =  125 bits (313), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 14/244 (5%)

Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
             P    +YW D+G+ P+I ++ +DGS    I++  I  P  LT+D Q   +YW DAKL+
Sbjct: 145 LDPSSGFMYWTDWGEVPKIERAGMDGSSRFVIINTEIYWPNGLTLDYQERKLYWADAKLN 204

Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
            I K + +G NRQ +++ +LP+P  + + +  +YW D N  ++   +K     +     I
Sbjct: 205 FIHKSNLDGTNRQAVVKGSLPHPFALTLFEDTLYWTDWNTHSILACNKYTGEGL---REI 261

Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGT 218
            + +    DI  F    Q P+  NPC    NGGC  LC   PV     K  Y+C C TG 
Sbjct: 262 HSNIFSPMDIHAFSQQRQ-PNATNPC-GIDNGGCSHLCLMSPV-----KPFYQCACPTGV 314

Query: 219 PSASDPKKCT-TMDEYLVFSTRTEIRALHLD-PTLTAVPFKTVSNLTNVVGVEFDYADDK 276
               + K C     E L+ + RT++R + LD P  T +  + + ++ + + +++D  +  
Sbjct: 315 KLMENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQ-LEDIRHAIAIDYDPVEGY 373

Query: 277 ILFT 280
           I +T
Sbjct: 374 IYWT 377

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation.

Mus musculus (taxid: 10090)

>sp|O75581|LRP6_HUMAN Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 14/244 (5%)

Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
             P    +YW D+G+ P+I ++ +DGS    I+++ I  P  LT+D +   +YW DAKL+
Sbjct: 145 LDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 204

Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
            I K + +G NRQ +++ +LP+P  + + +  +YW D +  ++   +K     +     I
Sbjct: 205 FIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGL---REI 261

Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGT 218
            + +    DI  F    Q P+  NPC    NGGC  LC   PV     K  Y+C C TG 
Sbjct: 262 HSDIFSPMDIHAFSQQRQ-PNATNPC-GIDNGGCSHLCLMSPV-----KPFYQCACPTGV 314

Query: 219 PSASDPKKCT-TMDEYLVFSTRTEIRALHLD-PTLTAVPFKTVSNLTNVVGVEFDYADDK 276
               + K C     E L+ + RT++R + LD P  T +  + + ++ + + +++D  +  
Sbjct: 315 KLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQ-LEDIRHAIAIDYDPVEGY 373

Query: 277 ILFT 280
           I +T
Sbjct: 374 IYWT 377

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation.

Homo sapiens (taxid: 9606)

>sp|Q07954|LRP1_HUMAN Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2

 Score =  120 bits (302), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 132/257 (51%), Gaps = 29/257 (11%)

Query: 42   PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
            P    L+W ++GQYPRI +S LDG++   +V+  IS P  +++D Q   +YW DA+ D I
Sbjct: 2017 PEKGYLFWTEWGQYPRIERSRLDGTERVVLVNVSISWPNGISVDYQDGKLYWCDARTDKI 2076

Query: 102  QKISYNGG-NRQII-RRNLPNPMGIAVHKSDVYWVDRNLR--TVYKASKLASTNITLPTP 157
            ++I    G NR+++   N  +   ++V +  +YW DR     ++ + SK    N T   P
Sbjct: 2077 ERIDLETGENREVVLSSNNMDMFSVSVFEDFIYWSDRTHANGSIKRGSK---DNATDSVP 2133

Query: 158  IRTGLS-GLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
            +RTG+   L+DI +F+   Q     N C    NGGC+QLC        + +    C CA 
Sbjct: 2134 LRTGIGVQLKDIKVFNRDRQ--KGTNVC-AVANGGCQQLCLY------RGRGQRACACAH 2184

Query: 217  GTPSASDPKKCTTMDEYLVFSTRTEIRALHL--DPTLTA--VPFKTVSNLTNVVGVEFDY 272
            G   A D   C     YL++S RT ++++HL  +  L A   PF+   ++ NV+ + FDY
Sbjct: 2185 GM-LAEDGASCREYAGYLLYSERTILKSIHLSDERNLNAPVQPFEDPEHMKNVIALAFDY 2243

Query: 273  -------ADDKILFTQI 282
                     ++I F+ I
Sbjct: 2244 RAGTSPGTPNRIFFSDI 2260

Functions as a receptor for Pseudomonas aeruginosa exotoxin A.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	407
357622730	4358	hypothetical protein KGM_12959 [Danaus p	0.685	0.064	0.664	1e-107
270016386	1751	hypothetical protein TcasGA2_TC004260 [T	0.678	0.157	0.655	1e-102
91094565	1731	PREDICTED: similar to low-density lipopr	0.678	0.159	0.655	1e-102
242019639	4568	low-density lipoprotein receptor, putati	0.687	0.061	0.624	1e-101
157124457	4525	low-density lipoprotein receptor (ldl) [	0.683	0.061	0.629	1e-101
307171853	4578	Low-density lipoprotein receptor-related	0.680	0.060	0.615	2e-99
328709384	4640	PREDICTED: low-density lipoprotein recep	0.687	0.060	0.608	1e-98
195049411	4576	GH24913 [Drosophila grimshawi] gi|193893	0.683	0.060	0.618	1e-97
195132161	4555	GI15973 [Drosophila mojavensis] gi|19390	0.680	0.060	0.615	2e-97
332024241	4558	Low-density lipoprotein receptor-related	0.678	0.060	0.608	3e-97

>gi|357622730|gb|EHJ74141.1| hypothetical protein KGM_12959 [Danaus plexippus]

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/286 (66%), Positives = 228/286 (79%), Gaps = 7/286 (2%)

Query: 41   SPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
            +PL RLLYWIDYGQYPRIGK+YLDGS W ++VS+GIS PRDLTIDM THDVYWVD+KLD 
Sbjct: 2177 NPLKRLLYWIDYGQYPRIGKAYLDGSNWQTVVSSGISNPRDLTIDMLTHDVYWVDSKLDQ 2236

Query: 101  IQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
            IQKISYNGGNRQ+IR NLPN MGIA+H S VYWVDRNL+TVYKASKL   N+++P  +RT
Sbjct: 2237 IQKISYNGGNRQLIRSNLPNVMGIAIHTSSVYWVDRNLQTVYKASKLPG-NMSMPEKLRT 2295

Query: 161  GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
             L  LRDI IFDI NQP DE+NPC + GNGGC+QLCFSYP E  +   H +CDCA G  S
Sbjct: 2296 NLPKLRDIVIFDINNQPNDESNPCRKLGNGGCDQLCFSYPPEANKGYTH-RCDCAVGQIS 2354

Query: 221  ASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFT 280
            A++PKKC  +DEYLVF+TRTEIR+++LDP  T VPFK + NLTNVVGVEFDYAD+K+ FT
Sbjct: 2355 ATNPKKCDVVDEYLVFTTRTEIRSVNLDPKSTGVPFKPIGNLTNVVGVEFDYADNKLFFT 2414

Query: 281  QIRPWAKIAWIPTTNPS-SASSNL----TNVVGVEFDYADDKILFT 321
            QIRPWA+IAW+P  +P+ SA  N+     N  G+ +D+   K+ +T
Sbjct: 2415 QIRPWARIAWMPANDPNPSAIQNIISKNINPEGISYDWTQKKVYWT 2460

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270016386|gb|EFA12832.1| hypothetical protein TcasGA2_TC004260 [Tribolium castaneum]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/287 (65%), Positives = 221/287 (77%), Gaps = 11/287 (3%)

Query: 41  SPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
           +PL R+LYWIDYGQYPRIGK+ LDGS W  ++++GIS P DLTIDM THDVYW+D+KLD 
Sbjct: 18  NPLKRILYWIDYGQYPRIGKANLDGSGWMPVITSGISNPTDLTIDMNTHDVYWIDSKLDT 77

Query: 101 IQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
           IQKISYNGGNRQIIRRNLPNPMGIAVHKS+VYWVDRNLRTV+KASK+   N TLP  +RT
Sbjct: 78  IQKISYNGGNRQIIRRNLPNPMGIAVHKSEVYWVDRNLRTVFKASKIVG-NTTLPNRVRT 136

Query: 161 GLSGLRDIAIFDIVNQPPDENNPC-FRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTP 219
            L GLRDIAIFD+ NQP DE NPC FR  NGGCEQLCFS+P +    +   KCDCATG  
Sbjct: 137 NLQGLRDIAIFDVTNQPTDETNPCKFR--NGGCEQLCFSFPND-GTTRSSLKCDCATGN- 192

Query: 220 SASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILF 279
             SD +KC  ++EYLVFSTRTEIRA++LDP  T VPF  V NLTNVVG++FDY D K+LF
Sbjct: 193 LGSDGRKCEYVNEYLVFSTRTEIRAINLDPRSTNVPFSPVGNLTNVVGIDFDYKDQKLLF 252

Query: 280 TQIRPWAKIAWIPTTNPSSAS-----SNLTNVVGVEFDYADDKILFT 321
           TQIRPWA+IA++P T P +       S   N  G+ +D+   KI +T
Sbjct: 253 TQIRPWARIAYMPATTPKNTDIKNIISRGINPEGIAYDWTQKKIYWT 299

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91094565|ref|XP_967627.1| PREDICTED: similar to low-density lipoprotein receptor (ldl), partial [Tribolium castaneum]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/287 (65%), Positives = 221/287 (77%), Gaps = 11/287 (3%)

Query: 41  SPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
           +PL R+LYWIDYGQYPRIGK+ LDGS W  ++++GIS P DLTIDM THDVYW+D+KLD 
Sbjct: 12  NPLKRILYWIDYGQYPRIGKANLDGSGWMPVITSGISNPTDLTIDMNTHDVYWIDSKLDT 71

Query: 101 IQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
           IQKISYNGGNRQIIRRNLPNPMGIAVHKS+VYWVDRNLRTV+KASK+   N TLP  +RT
Sbjct: 72  IQKISYNGGNRQIIRRNLPNPMGIAVHKSEVYWVDRNLRTVFKASKIVG-NTTLPNRVRT 130

Query: 161 GLSGLRDIAIFDIVNQPPDENNPC-FRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTP 219
            L GLRDIAIFD+ NQP DE NPC FR  NGGCEQLCFS+P +    +   KCDCATG  
Sbjct: 131 NLQGLRDIAIFDVTNQPTDETNPCKFR--NGGCEQLCFSFPND-GTTRSSLKCDCATGN- 186

Query: 220 SASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILF 279
             SD +KC  ++EYLVFSTRTEIRA++LDP  T VPF  V NLTNVVG++FDY D K+LF
Sbjct: 187 LGSDGRKCEYVNEYLVFSTRTEIRAINLDPRSTNVPFSPVGNLTNVVGIDFDYKDQKLLF 246

Query: 280 TQIRPWAKIAWIPTTNPSSAS-----SNLTNVVGVEFDYADDKILFT 321
           TQIRPWA+IA++P T P +       S   N  G+ +D+   KI +T
Sbjct: 247 TQIRPWARIAYMPATTPKNTDIKNIISRGINPEGIAYDWTQKKIYWT 293

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019639|ref|XP_002430267.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] gi|212515374|gb|EEB17529.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis]

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/285 (62%), Positives = 222/285 (77%), Gaps = 5/285 (1%)

Query: 41   SPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
            +P+ + LYWIDYGQYPRIGK+YLDG+ WT +V++GI+ PRDLT+DM THDVYWVD+K+D+
Sbjct: 2142 NPIKKYLYWIDYGQYPRIGKAYLDGTHWTPVVTSGITNPRDLTVDMLTHDVYWVDSKMDV 2201

Query: 101  IQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
            IQKI ++GG RQ+IRRNLPNPMGIAV+KSDVYWVDRNL++V+KASKL   N + P  +RT
Sbjct: 2202 IQKIGFSGGARQVIRRNLPNPMGIAVYKSDVYWVDRNLQSVFKASKLIG-NSSQPIAVRT 2260

Query: 161  GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKL-HYKCDCATGTP 219
             L  LRDIAIFDI+NQP ++ NPC R GNGGC QLCFSYP     +    +KCDCA G+ 
Sbjct: 2261 NLQKLRDIAIFDILNQPDEDYNPCKRLGNGGCSQLCFSYPTNGSYSSAPSFKCDCAIGSV 2320

Query: 220  SASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILF 279
            S  D KKCTT DE+LVFSTRTEIRA+ LDP  T +PFK ++NLTNVVGV+FDY D K+LF
Sbjct: 2321 SPDDQKKCTTYDEFLVFSTRTEIRAIDLDPRSTVIPFKPLANLTNVVGVDFDYDDKKLLF 2380

Query: 280  TQIRPWAKIAWIPTTNPSSASSNLT---NVVGVEFDYADDKILFT 321
            TQIRPWA+IAW  + NP +  + +    N  G+ +D+   KI +T
Sbjct: 2381 TQIRPWARIAWTSSKNPDTIHNIINRGINPEGIAYDWTQKKIYWT 2425

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157124457|ref|XP_001660469.1| low-density lipoprotein receptor (ldl) [Aedes aegypti] gi|108873980|gb|EAT38205.1| AAEL009869-PA [Aedes aegypti]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/286 (62%), Positives = 219/286 (76%), Gaps = 8/286 (2%)

Query: 41   SPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
            +P+ RLLYWIDYGQYPRIGK YLDGS WT +V++GIS PRDLT+DM THDVYWVD+KLD+
Sbjct: 2087 NPIKRLLYWIDYGQYPRIGKCYLDGSNWTPVVTSGISNPRDLTVDMLTHDVYWVDSKLDM 2146

Query: 101  IQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
            IQKISYNGGNRQ+IRRNL NPM IAVH +D+YWVDRNL TV+KA+K    N TLP  +RT
Sbjct: 2147 IQKISYNGGNRQVIRRNLANPMAIAVHLTDIYWVDRNLLTVFKATKFPGNN-TLPEKVRT 2205

Query: 161  GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
             L  LRDI I+DI NQP D+NNPC R GNGGC+QLCFS+P E+ Q K ++KCDC+ G  S
Sbjct: 2206 NLQKLRDITIYDINNQPTDDNNPCLRLGNGGCDQLCFSFPPEYNQ-KPNFKCDCSVGRLS 2264

Query: 221  ASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFT 280
             +D ++C   DEY+VFSTRTEIRA+ L+P  T VPF  V NLTNVVG++FDYAD+K+ FT
Sbjct: 2265 -TDGRRCELADEYVVFSTRTEIRAIELNPASTNVPFAPVVNLTNVVGLDFDYADNKLFFT 2323

Query: 281  QIRPWAKIAWIPTTNPSSAS-----SNLTNVVGVEFDYADDKILFT 321
            QIRPWAKIA+     P + S     +   N  G+ +D+   KI +T
Sbjct: 2324 QIRPWAKIAYTKGDKPDATSIKPVITRGINPEGIAYDWTQKKIYWT 2369

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171853|gb|EFN63508.1| Low-density lipoprotein receptor-related protein 2 [Camponotus floridanus]

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 176/286 (61%), Positives = 216/286 (75%), Gaps = 9/286 (3%)

Query: 41   SPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
            +P+ R LYWIDYGQYPRIGK++LDGS W+ IV++GIS PRDLTID  THD+YWVD+KLD 
Sbjct: 2169 NPIKRYLYWIDYGQYPRIGKAFLDGSNWSPIVTSGISTPRDLTIDFATHDIYWVDSKLDT 2228

Query: 101  IQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
            IQK+SY GGNR+IIRRNLPNPMG+A+   DVYWVDRNL TV+KASKL ++NI+LPTP+RT
Sbjct: 2229 IQKVSYTGGNREIIRRNLPNPMGVAIFGGDVYWVDRNLATVFKASKLKASNISLPTPVRT 2288

Query: 161  GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
             L  LRDIAIFD  +QPPD  NPC +  N  C QLCF++P E P +   + CDCA G  S
Sbjct: 2289 NLQKLRDIAIFDQSSQPPDLTNPCSQVLNNECSQLCFAFPKENPTS---FTCDCAVGKLS 2345

Query: 221  ASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFT 280
             SD   C  ++EYLVF+TRTEIRA+++DP  T +PF  + NLTNVVGV+FDY D K+LFT
Sbjct: 2346 -SDNHTCENVEEYLVFATRTEIRAINIDPHNTNIPFTPIGNLTNVVGVDFDYQDKKLLFT 2404

Query: 281  QIRPWAKIAWIPTTNPSSAS-----SNLTNVVGVEFDYADDKILFT 321
            QIRPWAKIAW P+  PSSA      S   N  G+ +D+   K+ +T
Sbjct: 2405 QIRPWAKIAWTPSDRPSSADLHTLISKGINPEGISYDWTQKKVYWT 2450

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709384|ref|XP_001944217.2| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Acyrthosiphon pisum]

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 174/286 (60%), Positives = 222/286 (77%), Gaps = 6/286 (2%)

Query: 41   SPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
            +P+ RLLYWIDYGQYP+IGK+YLDGS W  IV+ GIS PRDLT+DM THDVYWVDA+LDL
Sbjct: 2212 NPIKRLLYWIDYGQYPKIGKAYLDGSNWMPIVTTGISQPRDLTVDMVTHDVYWVDARLDL 2271

Query: 101  IQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
            IQK+S +GG RQ++RRN+PNPMGIA+H SD+YWVDRNL+T++KASKL   N ++PTPIRT
Sbjct: 2272 IQKVSASGGERQVVRRNIPNPMGIAIHLSDMYWVDRNLKTIFKASKLPGNN-SMPTPIRT 2330

Query: 161  GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
            GL  LRDIAIFD+  QPPDE+N C R GNGGC+QLCFS+P  +  NK  ++CDCATG  +
Sbjct: 2331 GLPRLRDIAIFDVNTQPPDESNSCSRFGNGGCDQLCFSFPPSYSINKFLFRCDCATGVIA 2390

Query: 221  ASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFT 280
            A    KC T+ EYLVF+TRTEIR+  LDP  T +PFK V NL+NVVG++FDYAD+K+ FT
Sbjct: 2391 AGTGTKCDTVSEYLVFATRTEIRSASLDPLSTTLPFKPVGNLSNVVGLDFDYADNKLFFT 2450

Query: 281  QIRPWAKIAWIPTTNPSSASSNL-----TNVVGVEFDYADDKILFT 321
            QIRP  +I+ + + +PS++   +      N  G+ +D+   KI +T
Sbjct: 2451 QIRPMPQISSVSSNSPSNSQIKMILGRRINPEGISYDWTQKKIYWT 2496

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195049411|ref|XP_001992716.1| GH24913 [Drosophila grimshawi] gi|193893557|gb|EDV92423.1| GH24913 [Drosophila grimshawi]

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 177/286 (61%), Positives = 222/286 (77%), Gaps = 8/286 (2%)

Query: 41   SPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
            +P+ RLLYWIDYGQ+PRIGK+ LDGSKW  +V++GIS+PRDLTIDMQTHDV+WVD+KLD 
Sbjct: 2136 NPIKRLLYWIDYGQHPRIGKAMLDGSKWQPLVTSGISLPRDLTIDMQTHDVFWVDSKLDT 2195

Query: 101  IQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
            IQKISYNG NR++IRR+LPNPMGIA+ ++DVYWVDRNL TV+KASKL   N T  T +RT
Sbjct: 2196 IQKISYNGVNRKVIRRDLPNPMGIAIFRNDVYWVDRNLMTVFKASKLFG-NDTEVTRVRT 2254

Query: 161  GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
             L  LRDIAI+DI NQP D+NNPC + GNGGC+QLCFS+P E P    +Y+CDCATG   
Sbjct: 2255 NLEKLRDIAIYDINNQPADDNNPCAQLGNGGCDQLCFSFPPE-PSTAKNYRCDCATGKLG 2313

Query: 221  ASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFT 280
            A D   C T++EYLVF+TRTEIRA++L+P  T VPF  +SNLTNVVGV+FD+A +++L+T
Sbjct: 2314 A-DNHTCETVNEYLVFATRTEIRAVNLNPHSTEVPFTPLSNLTNVVGVDFDFAGNRMLYT 2372

Query: 281  QIRPWAKIAWIPTTNPSSASSNLT-----NVVGVEFDYADDKILFT 321
            QIRPWAKIA+     PS +   +      N  G+ +D+   KI +T
Sbjct: 2373 QIRPWAKIAYTQANKPSHSDITVVLNKGINPEGIAYDWTQSKIYWT 2418

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195132161|ref|XP_002010512.1| GI15973 [Drosophila mojavensis] gi|193908962|gb|EDW07829.1| GI15973 [Drosophila mojavensis]

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 176/286 (61%), Positives = 224/286 (78%), Gaps = 9/286 (3%)

Query: 41   SPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
            +P+ RLLYWID+GQ+PRIGK+ LDGS W  +V++GIS PRDLTIDMQTHDVYWVD+KLD 
Sbjct: 2116 NPIKRLLYWIDHGQHPRIGKALLDGSDWIPLVTSGISQPRDLTIDMQTHDVYWVDSKLDT 2175

Query: 101  IQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
            IQKISYNG N ++IRR+LPNP+GIA++ +DVYWVD NL +V+KASKL   N  + TP+RT
Sbjct: 2176 IQKISYNGVNAKVIRRDLPNPVGIAIYLNDVYWVDGNLNSVFKASKLYGNNSEV-TPVRT 2234

Query: 161  GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
             L  L DIAI+DI NQP D+NNPC + GNGGC QLCFS+P E P N+ +Y+CDCATG  S
Sbjct: 2235 NLEKLTDIAIYDINNQPTDDNNPCAKLGNGGCHQLCFSFPQE-PSNR-NYRCDCATGKLS 2292

Query: 221  ASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFT 280
            A D +KC T++EYLVF+TRTEIRA++LDP  T VPF  ++NLTNVVG++FD+AD+ +LFT
Sbjct: 2293 A-DGRKCETVNEYLVFATRTEIRAVNLDPHSTEVPFTPLTNLTNVVGLDFDFADNHMLFT 2351

Query: 281  QIRPWAKIAWIPTTNPSSASSNLT-----NVVGVEFDYADDKILFT 321
            QIRPWAKIA+     PS +  N+      N  G+ +D+  +KI +T
Sbjct: 2352 QIRPWAKIAYTSANKPSHSDINVVLSKGINPEGIAYDWTQNKIYWT 2397

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024241|gb|EGI64445.1| Low-density lipoprotein receptor-related protein 2 [Acromyrmex echinatior]

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 174/286 (60%), Positives = 215/286 (75%), Gaps = 10/286 (3%)

Query: 41   SPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
            +P+ R LYWIDYGQYPRIGK++LDGS W+ IV++GIS PRDLTID+ THDVYWVD+KLD 
Sbjct: 2153 NPIKRYLYWIDYGQYPRIGKAFLDGSNWSPIVTSGISTPRDLTIDLATHDVYWVDSKLDT 2212

Query: 101  IQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
            IQK+SY GGN++IIRRN+PNPMG+A+   DVYWVDRNL TV+KASKL   N +LP P+RT
Sbjct: 2213 IQKVSYTGGNQEIIRRNVPNPMGVAIFGGDVYWVDRNLATVFKASKLKG-NTSLPIPVRT 2271

Query: 161  GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
             L  LRDIAIFD  +QPPD  NPC +  NGGC QLCF++P + P++   + CDCA G  S
Sbjct: 2272 NLQKLRDIAIFDQNSQPPDITNPCAQVTNGGCSQLCFAFPKDSPKS---FTCDCAVGELS 2328

Query: 221  ASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFT 280
              D + C  + EYLVF+TRTEIRA++LDP  T +PF  V NLTNVVGV+FDY D K+LFT
Sbjct: 2329 P-DGRNCENVQEYLVFATRTEIRAINLDPHNTNMPFAPVGNLTNVVGVDFDYQDKKLLFT 2387

Query: 281  QIRPWAKIAWIPTTNPSSAS-----SNLTNVVGVEFDYADDKILFT 321
            QIRPWAKIAW P+  PSS+      S   N  G+ +D+   K+ +T
Sbjct: 2388 QIRPWAKIAWTPSDRPSSSDLHTLISKGINPEGISYDWTQKKVYWT 2433

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	407
FB|FBgn0261260	4769	mgl "Megalin" [Drosophila mela	0.683	0.058	0.596	1.1e-89
UNIPROTKB|F1NJS9	4644	LRP2 "Uncharacterized protein"	0.665	0.058	0.394	2.7e-47
UNIPROTKB|F1NCT2	4645	LRP2 "Uncharacterized protein"	0.665	0.058	0.394	2.7e-47
UNIPROTKB|P98164	4655	LRP2 "Low-density lipoprotein	0.665	0.058	0.394	1.9e-46
MGI|MGI:95794	4660	Lrp2 "low density lipoprotein	0.668	0.058	0.385	8e-46
RGD|68407	4660	Lrp2 "low density lipoprotein	0.663	0.057	0.376	3.4e-45
UNIPROTKB|P98158	4660	Lrp2 "Low-density lipoprotein	0.663	0.057	0.376	3.4e-45
ZFIN|ZDB-GENE-050119-2	4673	lrp2a "low density lipoprotein	0.670	0.058	0.363	1.2e-44
UNIPROTKB|F1N6H1	4626	LRP2 "Uncharacterized protein"	0.665	0.058	0.391	3.4e-43
UNIPROTKB|F1PIB4	4549	LRP2 "Uncharacterized protein"	0.668	0.059	0.361	2.9e-40

FB|FBgn0261260 mgl "Megalin" [Drosophila melanogaster (taxid:7227)]

 Score = 907 (324.3 bits), Expect = 1.1e-89, Sum P(3) = 1.1e-89
 Identities = 173/290 (59%), Positives = 221/290 (76%)

Query:    41 SPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
             +P+ RLLYWIDYGQ+PRIGK+ LDGSKWT +V++GIS+PRDLTIDMQTHD+YWVD+KLD 
Sbjct:  2322 NPIKRLLYWIDYGQHPRIGKALLDGSKWTPLVTSGISLPRDLTIDMQTHDIYWVDSKLDT 2381

Query:   101 IQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
             IQKISYNG NR+IIRR+LPNPMGIAV+ +DVYWVDRNL TV+KASK  S N T  T +RT
Sbjct:  2382 IQKISYNGANRKIIRRDLPNPMGIAVYLNDVYWVDRNLMTVFKASK-HSANETA-TSVRT 2439

Query:   161 GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKL----HYKCDCAT 216
              L  LRDIAI++I NQP D+ NPC   GNGGC+QLCFS+P +   +      +++C+CAT
Sbjct:  2440 NLEKLRDIAIYNINNQPQDDTNPCAHLGNGGCDQLCFSFPPDGGASGTSGGRNFRCECAT 2499

Query:   217 GTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDK 276
             G  SA D +KC  ++EYLVF+TRTEIRA++LDP  T VPF  ++NLTNVVG++FD+A ++
Sbjct:  2500 GKLSA-DERKCEVVNEYLVFATRTEIRAVNLDPHSTEVPFTPLTNLTNVVGLDFDFAHNR 2558

Query:   277 ILFTQIRPWAKIAWIPTTNPSSASSNLT-----NVVGVEFDYADDKILFT 321
             +L+TQIRPWAKIA+     P      +      N  G+ +D+   KI +T
Sbjct:  2559 MLYTQIRPWAKIAYTKANKPGHDDITVVLNKGINPEGIAYDWTQQKIYWT 2608

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IMP

UNIPROTKB|F1NJS9 LRP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 500 (181.1 bits), Expect = 2.7e-47, Sum P(2) = 2.7e-47
 Identities = 116/294 (39%), Positives = 171/294 (58%)

Query:    42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
             P  R L+W DYGQ P+I +S+LD +  T +VS GI  PR L ID     VYWVD  LD+I
Sbjct:  2184 PKNRYLFWADYGQNPKIERSFLDCTNRTVLVSEGIVTPRGLAIDHSNGYVYWVDDSLDMI 2243

Query:   102 QKISYNGGNRQIIR--RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
              +I  +GG+ +I+R     P P GI +  + + WVDRNL+ V++ASK    N   PT IR
Sbjct:  2244 ARIQPDGGDVEIVRYGSRYPTPYGITIFGNSMIWVDRNLKKVFQASKEPG-NTDQPTVIR 2302

Query:   160 TGLSGLRDIAIFDIVNQ---PPD-ENNPCFRTGNGGCEQLCFSYP-VEFPQNKLHYKCDC 214
               ++ LRD+ I++   Q   P D  NNPC    NGGC  LCF+ P V+ PQ      C C
Sbjct:  2303 DNINWLRDVTIYNSHFQSRSPLDVNNNPCLNN-NGGCFHLCFALPDVQTPQ------CGC 2355

Query:   215 ATGTPSASDPKKCT-TMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYA 273
             A GT   SD K+CT + D+YL+F+    +R++HLDP   + PF+ V+ L   V ++FD  
Sbjct:  2356 AFGTLD-SDGKRCTISTDDYLIFALENALRSIHLDPENHSPPFRAVNVLRTAVALDFDSI 2414

Query:   274 DDKILFTQIRPW--AKIAWIPTTN----PSSASSNLTNVVGVEFDYADDKILFT 321
             +++I FTQ  P    +I++I   +    P   +S+L    G+ FD+ ++++ ++
Sbjct:  2415 NNRIYFTQSYPSRAGRISYISIYSGIGTPIVVASDLGTPDGIAFDWINNRVYYS 2468

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NCT2 LRP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 500 (181.1 bits), Expect = 2.7e-47, Sum P(2) = 2.7e-47
 Identities = 116/294 (39%), Positives = 171/294 (58%)

Query:    42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
             P  R L+W DYGQ P+I +S+LD +  T +VS GI  PR L ID     VYWVD  LD+I
Sbjct:  2184 PKNRYLFWADYGQNPKIERSFLDCTNRTVLVSEGIVTPRGLAIDHSNGYVYWVDDSLDMI 2243

Query:   102 QKISYNGGNRQIIR--RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
              +I  +GG+ +I+R     P P GI +  + + WVDRNL+ V++ASK    N   PT IR
Sbjct:  2244 ARIQPDGGDVEIVRYGSRYPTPYGITIFGNSMIWVDRNLKKVFQASKEPG-NTDQPTVIR 2302

Query:   160 TGLSGLRDIAIFDIVNQ---PPD-ENNPCFRTGNGGCEQLCFSYP-VEFPQNKLHYKCDC 214
               ++ LRD+ I++   Q   P D  NNPC    NGGC  LCF+ P V+ PQ      C C
Sbjct:  2303 DNINWLRDVTIYNSHFQSRSPLDVNNNPCLNN-NGGCFHLCFALPDVQTPQ------CGC 2355

Query:   215 ATGTPSASDPKKCT-TMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYA 273
             A GT   SD K+CT + D+YL+F+    +R++HLDP   + PF+ V+ L   V ++FD  
Sbjct:  2356 AFGTLD-SDGKRCTISTDDYLIFALENALRSIHLDPENHSPPFRAVNVLRTAVALDFDSI 2414

Query:   274 DDKILFTQIRPW--AKIAWIPTTN----PSSASSNLTNVVGVEFDYADDKILFT 321
             +++I FTQ  P    +I++I   +    P   +S+L    G+ FD+ ++++ ++
Sbjct:  2415 NNRIYFTQSYPSRAGRISYISIYSGIGTPIVVASDLGTPDGIAFDWINNRVYYS 2468

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0006766 "vitamin metabolic process" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

UNIPROTKB|P98164 LRP2 "Low-density lipoprotein receptor-related protein 2" [Homo sapiens (taxid:9606)]

 Score = 502 (181.8 bits), Expect = 1.9e-46, Sum P(2) = 1.9e-46
 Identities = 116/294 (39%), Positives = 165/294 (56%)

Query:    42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
             P  R L+W DYGQ P+I +S+LD +  T +VS GI  PR L +D     VYWVD  LD+I
Sbjct:  2199 PKNRYLFWADYGQRPKIERSFLDCTNRTVLVSEGIVTPRGLAVDRSDGYVYWVDDSLDII 2258

Query:   102 QKISYNGGNRQIIR--RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
              +I  NG N ++IR     P P GI V ++ + WVDRNL+ +++ASK    N   PT IR
Sbjct:  2259 ARIRINGENSEVIRYGSRYPTPYGITVFENSIIWVDRNLKKIFQASK-EPENTEPPTVIR 2317

Query:   160 TGLSGLRDIAIFDIVNQP--PDE--NNPCFRTGNGGCEQLCFSYPVEFPQNKLHY-KCDC 214
               ++ LRD+ IFD   QP  P E  NNPC    NGGC  LCF+ P       LH  KCDC
Sbjct:  2318 DNINWLRDVTIFDKQVQPRSPAEVNNNPCLEN-NGGCSHLCFALP------GLHTPKCDC 2370

Query:   215 ATGTPSASDPKKCTTMDE-YLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYA 273
             A GT   SD K C    E +L+F+    +R+LHLDP   + PF+T++    V+ +++D  
Sbjct:  2371 AFGTLQ-SDGKNCAISTENFLIFALSNSLRSLHLDPENHSPPFQTINVERTVMSLDYDSV 2429

Query:   274 DDKILFTQ--IRPWAKIAWIPTTN----PSSASSNLTNVVGVEFDYADDKILFT 321
              D+I FTQ       +I++   ++    P+  +S +    G+ FD+   +I ++
Sbjct:  2430 SDRIYFTQNLASGVGQISYATLSSGIHTPTVIASGIGTADGIAFDWITRRIYYS 2483

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0005764 "lysosome" evidence=TAS

GO:0006486 "protein glycosylation" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0006897 "endocytosis" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0008202 "steroid metabolic process" evidence=TAS

GO:0042359 "vitamin D metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:95794 Lrp2 "low density lipoprotein receptor-related protein 2" [Mus musculus (taxid:10090)]

 Score = 497 (180.0 bits), Expect = 8.0e-46, Sum P(2) = 8.0e-46
 Identities = 113/293 (38%), Positives = 168/293 (57%)

Query:    42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
             P  R L+W DYGQ P+I +S+LD +  T +VS GI  PR L +D  T  +YWVD  LD+I
Sbjct:  2200 PKHRYLFWADYGQKPKIERSFLDCTNRTVLVSEGIVTPRGLAVDHDTGYIYWVDDSLDII 2259

Query:   102 QKISYNGGNRQIIR--RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
              +I  +GG  Q++R     P P GI V    + WVDRNLR V++ASK    N   PT IR
Sbjct:  2260 ARIHRDGGESQVVRYGSRYPTPYGITVFGESIIWVDRNLRKVFQASKQPG-NTDPPTVIR 2318

Query:   160 TGLSGLRDIAIFDIVNQP--PDE--NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCA 215
               ++ LRD+ IFD   QP  P E  NNPC ++ NGGC   CF+ P E P  K    C CA
Sbjct:  2319 DSINLLRDVTIFDEHVQPLSPAELNNNPCLQS-NGGCSHFCFALP-ELPTPK----CGCA 2372

Query:   216 TGTPSASDPKKC-TTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYAD 274
              GT    D K C T+ +++L++S    +R+LH DP    +PF+ +S     + +++D  +
Sbjct:  2373 FGTLE-DDGKNCATSREDFLIYSLNNSLRSLHFDPQDHNLPFQAISVEGMAIALDYDRRN 2431

Query:   275 DKILFTQ-IRPW-AKIAWIP----TTNPSSASSNLTNVVGVEFDYADDKILFT 321
             ++I FTQ + P   +I+++      ++P+   SN+    G+ FD+ + +I ++
Sbjct:  2432 NRIFFTQKLNPIRGQISYVNLYSGASSPTILLSNIGVTDGIAFDWINRRIYYS 2484

GO:0004872 "receptor activity" evidence=ISO;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=ISO;IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005903 "brush border" evidence=ISO;IDA

GO:0005905 "coated pit" evidence=IDA

GO:0006766 "vitamin metabolic process" evidence=IMP

GO:0006897 "endocytosis" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0010165 "response to X-ray" evidence=ISO

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=ISO

GO:0016324 "apical plasma membrane" evidence=ISO;IDA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0020028 "hemoglobin import" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0030492 "hemoglobin binding" evidence=ISO

GO:0030900 "forebrain development" evidence=IMP

GO:0031526 "brush border membrane" evidence=ISO;IDA

GO:0042953 "lipoprotein transport" evidence=ISO

GO:0042954 "lipoprotein transporter activity" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045056 "transcytosis" evidence=ISO

GO:0045177 "apical part of cell" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046879 "hormone secretion" evidence=ISO

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=ISO

RGD|68407 Lrp2 "low density lipoprotein receptor-related protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 491 (177.9 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
 Identities = 111/295 (37%), Positives = 170/295 (57%)

Query:    42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
             P  R L+W DYGQ P+I +S+LD +  T +VS GI  PR L +D  T  +YWVD  LDLI
Sbjct:  2200 PKHRYLFWADYGQKPKIERSFLDCTNRTVLVSEGIVTPRGLAMDHDTGYIYWVDDSLDLI 2259

Query:   102 QKISYNGGNRQIIR--RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
              +I  +GG  Q++R     P P GI V    + WVDRNL+ V++ASK    N   P  IR
Sbjct:  2260 ARIHLDGGESQVVRYGSRYPTPYGITVFGESIIWVDRNLKKVFQASKQPG-NTDPPVVIR 2318

Query:   160 TGLSGLRDIAIFDIVNQP--PDE--NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCA 215
               ++ LRD+ IFD   QP  P E  NNPC ++ NGGC   CF+ P E P  +    C CA
Sbjct:  2319 DKINLLRDVTIFDEHAQPLSPAELNNNPCLQS-NGGCSHFCFALP-ELPTPR----CGCA 2372

Query:   216 TGTPSASDPKKC-TTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYAD 274
              GT   +D K C T+ +++L++S    +R+LH DP   ++PF+ +S     + +++D  +
Sbjct:  2373 FGT-LGNDGKSCATSQEDFLIYSLNNSLRSLHFDPRDHSLPFQVISVAGTAIALDYDRRN 2431

Query:   275 DKILFTQ----IRPWAKIAWIP----TTNPSSASSNLTNVVGVEFDYADDKILFT 321
             ++I FTQ    +R   +I+++     +++P+   SN+    G+ FD+ + +I ++
Sbjct:  2432 NRIFFTQKLNSLR--GQISYVSLYSGSSSPTVLLSNIGVTDGIAFDWINRRIYYS 2484

GO:0004872 "receptor activity" evidence=IMP;TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005615 "extracellular space" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005768 "endosome" evidence=ISO;IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005903 "brush border" evidence=ISO;IDA

GO:0005905 "coated pit" evidence=IEA;ISO

GO:0006766 "vitamin metabolic process" evidence=ISO;TAS

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IDA;IMP

GO:0007568 "aging" evidence=IEP

GO:0008283 "cell proliferation" evidence=ISO

GO:0010165 "response to X-ray" evidence=IDA

GO:0010951 "negative regulation of endopeptidase activity" evidence=IC

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=ISO;IDA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0020028 "hemoglobin import" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0030492 "hemoglobin binding" evidence=IDA

GO:0030900 "forebrain development" evidence=ISO

GO:0031100 "organ regeneration" evidence=IEP

GO:0031526 "brush border membrane" evidence=ISO;IDA

GO:0032526 "response to retinoic acid" evidence=IEP

GO:0033280 "response to vitamin D" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0042953 "lipoprotein transport" evidence=IMP

GO:0043234 "protein complex" evidence=IDA

GO:0045056 "transcytosis" evidence=IMP

GO:0045177 "apical part of cell" evidence=ISO

GO:0046879 "hormone secretion" evidence=IMP

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IPI

GO:0042954 "lipoprotein transporter activity" evidence=IMP

UNIPROTKB|P98158 Lrp2 "Low-density lipoprotein receptor-related protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 491 (177.9 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
 Identities = 111/295 (37%), Positives = 170/295 (57%)

Query:    42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
             P  R L+W DYGQ P+I +S+LD +  T +VS GI  PR L +D  T  +YWVD  LDLI
Sbjct:  2200 PKHRYLFWADYGQKPKIERSFLDCTNRTVLVSEGIVTPRGLAMDHDTGYIYWVDDSLDLI 2259

Query:   102 QKISYNGGNRQIIR--RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
              +I  +GG  Q++R     P P GI V    + WVDRNL+ V++ASK    N   P  IR
Sbjct:  2260 ARIHLDGGESQVVRYGSRYPTPYGITVFGESIIWVDRNLKKVFQASKQPG-NTDPPVVIR 2318

Query:   160 TGLSGLRDIAIFDIVNQP--PDE--NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCA 215
               ++ LRD+ IFD   QP  P E  NNPC ++ NGGC   CF+ P E P  +    C CA
Sbjct:  2319 DKINLLRDVTIFDEHAQPLSPAELNNNPCLQS-NGGCSHFCFALP-ELPTPR----CGCA 2372

Query:   216 TGTPSASDPKKC-TTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYAD 274
              GT   +D K C T+ +++L++S    +R+LH DP   ++PF+ +S     + +++D  +
Sbjct:  2373 FGT-LGNDGKSCATSQEDFLIYSLNNSLRSLHFDPRDHSLPFQVISVAGTAIALDYDRRN 2431

Query:   275 DKILFTQ----IRPWAKIAWIP----TTNPSSASSNLTNVVGVEFDYADDKILFT 321
             ++I FTQ    +R   +I+++     +++P+   SN+    G+ FD+ + +I ++
Sbjct:  2432 NRIFFTQKLNSLR--GQISYVSLYSGSSSPTVLLSNIGVTDGIAFDWINRRIYYS 2484

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-050119-2 lrp2a "low density lipoprotein receptor-related protein 2a" [Danio rerio (taxid:7955)]

 Score = 488 (176.8 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
 Identities = 106/292 (36%), Positives = 167/292 (57%)

Query:    42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
             P  R L+W DYGQ P+I +++LDGS  T++VS+GI  PR L +D +   +YWVD  LD+I
Sbjct:  2199 PKNRYLFWADYGQTPKIERAFLDGSNRTALVSSGIVTPRGLALDHRDGYIYWVDDSLDMI 2258

Query:   102 QKISYNGGNRQIIR--RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
              ++   GG  +++R     P P GI V + +V WVDRNL+ V++ASK        P  IR
Sbjct:  2259 ARVRPEGGETEVVRYGSRYPTPYGITVFEGNVIWVDRNLKKVFRASKQPGAT-DQPAVIR 2317

Query:   160 TGLSGLRDIAIFDIVNQPPD----ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCA 215
               ++ LRD+ IFD   QP       NNPC  + NGGC   CF+  +   Q +   KC CA
Sbjct:  2318 DNINMLRDVTIFDRRMQPSSAHELNNNPCLES-NGGCAHFCFA--MAGAQTR---KCSCA 2371

Query:   216 TGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADD 275
              G  +A D     + D+YL+++T + +R+L LDP   ++PF  V+     V ++FD  D 
Sbjct:  2372 FGNLAADDSSCVVSRDDYLIYTTESTVRSLRLDPDDHSLPFPVVNVPRTSVALDFDRLDG 2431

Query:   276 KILFTQIRP--WAKIAWIPTTNPSSASSNLTNVVG----VEFDYADDKILFT 321
             +I FTQ      +KI++I   +P+S ++ + + +G    + +D+ + +I ++
Sbjct:  2432 RIYFTQSSGAGQSKISFITLASPTSPATEVASDLGAPDGIAYDWINRRIYYS 2483

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0070293 "renal absorption" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1N6H1 LRP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 468 (169.8 bits), Expect = 3.4e-43, Sum P(2) = 3.4e-43
 Identities = 115/294 (39%), Positives = 160/294 (54%)

Query:    42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
             P  R L+W DYGQ P+I +S+LD +  T +VS+  + PR L +D  ++ +YWVD  +DLI
Sbjct:  2172 PKNRYLFWSDYGQNPKIERSFLDCTNRTVLVSDITATPRGLALDHSSNYIYWVDDAVDLI 2231

Query:   102 QKISYNGGNRQIIR--RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
              +IS  GG  ++IR   + P P  I V  + + WVDRNL+ + +ASK        PT IR
Sbjct:  2232 ARISIEGGETEVIRFGSHYPAPYAITVFGNSIIWVDRNLKKILQASK-EPNRADRPTVIR 2290

Query:   160 TGLSGLRDIAIFDIVNQP--PDE--NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCA 215
               +  LRD+ IFD   QP  P E  NNPC    NGGC Q CF+ P    Q     KCDCA
Sbjct:  2291 DNIDWLRDVTIFDQSVQPRSPAEVNNNPCLEN-NGGCAQFCFALPKS--QTP---KCDCA 2344

Query:   216 TGTPSASDPKKCTTMDE-YLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYAD 274
              GT  A D K C    E +L+F+    +R+L  DP   + PF  +S     V +++D  D
Sbjct:  2345 FGTLQA-DGKSCAISSENFLIFALDDSLRSLRFDPKDYSQPFPAISVERMAVALDYDSID 2403

Query:   275 DKILFTQIRPWAKIAWIPTTNPSSASSNLTNVV-------GVEFDYADDKILFT 321
             ++I FTQ+ P  K   I   N +S SS  T VV       G+ FD+ + +I ++
Sbjct:  2404 NRIYFTQLLPSGK-GQISYINLNSRSSPPTVVVSGIGSPEGIAFDWINKRIYYS 2456

GO:0031526 "brush border membrane" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0006766 "vitamin metabolic process" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1PIB4 LRP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 448 (162.8 bits), Expect = 2.9e-40, P = 2.9e-40
 Identities = 106/293 (36%), Positives = 159/293 (54%)

Query:    42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
             P  R L+W DYGQ P+I +S+LD +  T +VS GI  PR L +D     +YWVD  LD+I
Sbjct:  2172 PKNRYLFWADYGQSPKIERSFLDCTNRTVLVSEGIVTPRGLAVDHSNGYIYWVDDSLDII 2231

Query:   102 QKISYNGGNRQIIR--RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
              +I       ++IR     P P  I V  + + WVDRNL+ +++ASK  +++   PT IR
Sbjct:  2232 ARIGIEAEETEVIRYGSRYPTPYAITVFGNSIIWVDRNLKKIFQASKEPNSSEP-PTVIR 2290

Query:   160 TGLSGLRDIAIFDIVNQP--PDE--NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCA 215
               L+ LRD+ IFD   QP  P E  NNPC    NGGC   CF+ P          KC CA
Sbjct:  2291 DNLNWLRDVTIFDQSVQPRSPAEVNNNPCLEN-NGGCTHFCFALP-----GLDTAKCGCA 2344

Query:   216 TGTPSASDPKKCTTMDE-YLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYAD 274
              GT   +  K C    E +L+F+    +R+LHLDP + + PF+ +S     V + +D   
Sbjct:  2345 FGTLEGNG-KSCAMPSENFLIFALENTLRSLHLDPEVHSPPFQAISVDRVAVDLAYDGLS 2403

Query:   275 DKILFTQIRPW--AKIAWIP----TTNPSSASSNLTNVVGVEFDYADDKILFT 321
             ++I FTQ      ++I+++     T +P++  S   N+ G+ FD+ + +I ++
Sbjct:  2404 NRIYFTQSLESGNSRISYVSLNSGTRSPTAVISGKGNLDGIAFDWINRRIYYS 2456

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	407
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	3e-06
pfam00058	42	pfam00058, Ldl_recept_b, Low-density lipoprotein r	4e-04

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 71  IVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR 111
           ++S+G+  P  L +D     +YW D  LD+I+  + +G NR
Sbjct: 3   LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 45 RLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTID 85
            LYW D      I  + L+GS   ++ S  +  P  + +D
Sbjct: 1  GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVD 41

This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	407
KOG1215|consensus	877		100.0
KOG1214|consensus	1289		100.0
KOG1215|consensus	877		99.97
KOG1214|consensus	1289		99.93
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.75
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.52
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.45
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.28
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	99.25
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	99.16
PRK11028	330	6-phosphogluconolactonase; Provisional	99.11
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.0
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.99
COG3391	381	Uncharacterized conserved protein [Function unknow	98.94
PRK11028	330	6-phosphogluconolactonase; Provisional	98.91
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	98.73
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.71
KOG4659|consensus	1899		98.7
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.68
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	98.67
COG3391	381	Uncharacterized conserved protein [Function unknow	98.65
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.63
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.61
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.58
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	98.53
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.46
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.44
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.22
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.15
KOG4659|consensus	1899		98.12
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.01
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.94
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.89
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.87
PF12662	24	cEGF: Complement Clr-like EGF-like	97.74
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.6
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.55
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	97.48
KOG1520|consensus	376		97.41
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.39
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.18
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.14
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	97.13
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	97.1
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.09
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.07
KOG1520|consensus	376		96.93
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.79
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	96.65
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.57
KOG4499|consensus	310		96.39
PRK05137	435	tolB translocation protein TolB; Provisional	96.08
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	96.08
KOG4499|consensus	310		96.02
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	95.98
PRK04792	448	tolB translocation protein TolB; Provisional	95.95
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.93
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.83
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	95.69
PRK04043	419	tolB translocation protein TolB; Provisional	95.6
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	95.34
PRK02888	635	nitrous-oxide reductase; Validated	95.3
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.19
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	95.1
PRK02889	427	tolB translocation protein TolB; Provisional	94.89
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	94.77
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	94.73
PRK03629	429	tolB translocation protein TolB; Provisional	94.67
PRK04043	419	tolB translocation protein TolB; Provisional	94.66
COG4946	668	Uncharacterized protein related to the periplasmic	94.53
PRK00178	430	tolB translocation protein TolB; Provisional	94.22
PRK03629	429	tolB translocation protein TolB; Provisional	94.17
PRK04922	433	tolB translocation protein TolB; Provisional	94.06
PRK04792	448	tolB translocation protein TolB; Provisional	94.0
PRK05137	435	tolB translocation protein TolB; Provisional	94.0
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.86
smart00181	35	EGF Epidermal growth factor-like domain.	93.71
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	93.68
PRK02888	635	nitrous-oxide reductase; Validated	93.32
PRK04922	433	tolB translocation protein TolB; Provisional	93.21
PF09064	34	Tme5_EGF_like: Thrombomodulin like fifth domain, E	92.87
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.75
PRK01742	429	tolB translocation protein TolB; Provisional	92.73
PRK01029	428	tolB translocation protein TolB; Provisional	91.36
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.33
PRK02889	427	tolB translocation protein TolB; Provisional	91.18
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.54
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	90.01
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.83
PRK00178	430	tolB translocation protein TolB; Provisional	88.58
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	88.56
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	88.32
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	87.18
cd00053	36	EGF Epidermal growth factor domain, found in epide	86.7
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	86.62
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	86.33
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	85.77
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	85.32
COG4946	668	Uncharacterized protein related to the periplasmic	85.21
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	84.83
PRK01742	429	tolB translocation protein TolB; Provisional	84.38
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	83.22

>KOG1215|consensus

Probab=100.00  E-value=2.7e-34  Score=313.23  Aligned_cols=351  Identities=26%  Similarity=0.423  Sum_probs=286.9

Q ss_pred             ecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCC
Q psy950           19 RLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKL   98 (407)
Q Consensus        19 ~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~   98 (407)
                      ++|..+.+++...++.|+++++||..|+|||+||+..++|+|+.|||+.+++++..++.+|+||++|...+++||+|...
T Consensus       509 ~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~  588 (877)
T KOG1215|consen  509 LDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKL  588 (877)
T ss_pred             ccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccC
Confidence            78888999999999999999999999999999999767999999999999999999899999999999999999999999


Q ss_pred             C-eEEEEecCCCeEE-EEccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEe-eecC
Q psy950           99 D-LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIF-DIVN  175 (407)
Q Consensus        99 ~-~I~~~~~dG~~~~-~~~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~-~~~~  175 (407)
                      . .|++++++|.+++ .....+.||++++++++++||+||....+.+..+.. +.. . ..+..+...|..+.++ +...
T Consensus       589 ~~~i~~~~~~g~~r~~~~~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~  665 (877)
T KOG1215|consen  589 DYTIESANMDGQNRRVVDSEDLPHPFGLSVFEDYIYWTDWSNRAISRAEKHK-GSD-S-RTSRSNLAQPLDIILVHHSSS  665 (877)
T ss_pred             CcceeeeecCCCceEEeccccCCCceEEEEecceeEEeeccccceEeeeccc-CCc-c-eeeecccCcccceEEEecccc
Confidence            9 8999999999997 334789999999999999999999999999888886 322 2 3455677888888888 4445


Q ss_pred             CCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeee
Q psy950          176 QPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVP  255 (407)
Q Consensus       176 qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~  255 (407)
                      ||. +.|+|.. +|++|+|+|++.|..      . +|+||.|+.|..++++|..+..+++++....+..+..+.......
T Consensus       666 ~~~-~~n~C~~-~n~~c~~KOG~~p~~------~-~c~c~~~~~l~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~  736 (877)
T KOG1215|consen  666 RPT-GVNPCES-SNGGCSQLCLPRPQG------S-TCACPEGYRLSPDGKSCSSPEGYLLITSRTGIPCISLDSELSPDQ  736 (877)
T ss_pred             CCC-CCCcccc-cCCCCCeeeecCCCC------C-eeeCCCCCeecCCCCeecCcccccccccccccceeecCcccCCCc
Confidence            554 8999998 689999999999885      3 999999999999999999989999999999999998876533221


Q ss_pred             eEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcc--cc--cCCCCccEEEEeccCCeEEEEeCCCCCeEEE
Q psy950          256 FKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS--AS--SNLTNVVGVEFDYADDKILFTQIRPWAKIAW  331 (407)
Q Consensus       256 ~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~--~~--~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v  331 (407)
                      ..+..          +...+..+|++... ....+...+....  +.  ... .++++|+||..+.|||+.... ..|.+
T Consensus       737 ~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~  803 (877)
T KOG1215|consen  737 PLEDG----------DTIDRLEYWTDVRV-GVAAVSSQNCAPGYDLVGEGEP-PPEGSAVDEAEDTLYWTCSAT-SFIEV  803 (877)
T ss_pred             ccCCC----------cccccceecccccc-eeeEEEecCCCCccccccccCC-CCCCceeehhhcceEEEeecc-cEEEE
Confidence            11111          67788999988776 5444444433221  12  444 899999999999999999999 78888


Q ss_pred             EECCCCc--------c-cccCCCceeEEEEcCCCCeEEEEeCCCCCcccccCCCCCCCcceeEEEeCCCccceee
Q psy950          332 IPTTNPS--------S-ASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILSRGKDEKAKI  397 (407)
Q Consensus       332 ~~~~~~~--------r-l~~~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg~~~~~~~~~~l~~~~~~~~~~~  397 (407)
                      ..+++..        + ...+...|+.+.++|....+||++|...   +.+..+.++++....++......+..+
T Consensus       804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  875 (877)
T KOG1215|consen  804 SGLDGERKCRRRPEGVVDFDNPVPPRTTGVEPEKSLLFWTNWEPG---PKIPRSALDGSERLVLFKSLLSCPNAL  875 (877)
T ss_pred             EEEeeecccccccccccccCCCCCCcceeeccccceeccCCcccc---ceeeecccccccccceeccCCCCccCC
Confidence            8777641        1 2357789999999999999999999333   445567777777777777766665543

>KOG1214|consensus

Probab=100.00  E-value=5.1e-34  Score=285.65  Aligned_cols=193  Identities=26%  Similarity=0.423  Sum_probs=171.6

Q ss_pred             EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCC-CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEE
Q psy950           14 IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQ-YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVY   92 (407)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~-~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lY   92 (407)
                      |.++.++|+.+++|+..+|-+|++|++|+.+|.||||||.. +|+|++++|||+|+.+|+.+++..|+||++|+..+.|.
T Consensus      1092 IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LC 1171 (1289)
T KOG1214|consen 1092 IEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLC 1171 (1289)
T ss_pred             hheeecCCceeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeecccCCCCCceeCcccceee
Confidence            55799999999999999999999999999999999999974 79999999999999999999999999999999999999


Q ss_pred             EEeCCCCeEEEEecCCCeEEEEccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEee
Q psy950           93 WVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFD  172 (407)
Q Consensus        93 w~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~  172 (407)
                      |+|+++++.+.+..+|..|+++...+.+||+|+-+++++|||||..++|..+++.. ++..+ ..+..+-...+||+..-
T Consensus      1172 WvDAGt~rleC~~p~g~gRR~i~~~LqYPF~itsy~~~fY~TDWk~n~vvsv~~~~-~~~td-~~~p~~~s~lyGItav~ 1249 (1289)
T KOG1214|consen 1172 WVDAGTKRLECTLPDGTGRRVIQNNLQYPFSITSYADHFYHTDWKRNGVVSVNKHS-GQFTD-EYLPEQRSHLYGITAVY 1249 (1289)
T ss_pred             EEecCCcceeEecCCCCcchhhhhcccCceeeeeccccceeeccccCceEEeeccc-ccccc-ccccccccceEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999987 32222 23334445688987664


Q ss_pred             ecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCc
Q psy950          173 IVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGT  218 (407)
Q Consensus       173 ~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~  218 (407)
                        .++..+++||+. +||||+|||++.-.       ...|.||...
T Consensus      1250 --~~Cp~gstpCSe-dNGGCqHLCLpgqn-------gavcecpdnv 1285 (1289)
T KOG1214|consen 1250 --PYCPTGSTPCSE-DNGGCQHLCLPGQN-------GAVCECPDNV 1285 (1289)
T ss_pred             --ccCCCCCCcccc-cCCcceeecccCcC-------CccccCCccc
Confidence              556668999999 99999999996543       5899998754

>KOG1215|consensus

Probab=99.97  E-value=2.2e-29  Score=274.77  Aligned_cols=345  Identities=20%  Similarity=0.329  Sum_probs=266.8

Q ss_pred             CCCccEEEEE----EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCC-CCeEEEEeCCCCCeEEEEeCCCCC
Q psy950            4 TLALASLIWA----IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQ-YPRIGKSYLDGSKWTSIVSNGISM   78 (407)
Q Consensus         4 ~~~~~~~~~s----~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~-~~~I~r~~~dG~~~~~l~~~~~~~   78 (407)
                      +..+..+.|+    +.+...+++...+.+....+.|+.++..|..+++||+++.- .+.|+..++++..+..+....+..
T Consensus       206 d~~~~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~d~  285 (877)
T KOG1215|consen  206 DESEGRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADGDCSDRQKLCDGDLDC  285 (877)
T ss_pred             ccccCcccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCCCCccceEEecCccCC
Confidence            3334444444    46677778778888888899999999999999999999973 468999999999999998877888


Q ss_pred             ceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEc
Q psy950           79 PRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI  158 (407)
Q Consensus        79 P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i  158 (407)
                      |.|++.|.....+||         .+++|+.+++++...+.++          ||+++.+..+.+...-. +.  ...+.
T Consensus       286 pdg~de~~~~~~~~~---------~~~~d~~~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~--~~~~~  343 (877)
T KOG1215|consen  286 PDGLDEDYCKKKLYW---------SMNVDGSGRRILLSKLCHG----------YWTDGLNECAERVLKCS-HK--CPDVS  343 (877)
T ss_pred             CCcccccccccceee---------eeecccCCceeeecccCcc----------ccccccccchhhccccc-CC--CCccc
Confidence            999999999999999         8889988887334555555          69998887766655543 21  12222


Q ss_pred             ccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc---ccceeee
Q psy950          159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT---TMDEYLV  235 (407)
Q Consensus       159 ~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~---~~~~~Ll  235 (407)
                      ........+...++.....  ..++|.. .||+|+|+|++...      ..++|.|+.||.+..++  |.   .+.+||+
T Consensus       344 v~~~~~~~~~~~~~~~~~~--~~~~~~~-~~g~Csq~C~~~~p------~~~~c~c~~g~~~~~~~--c~~~~~~~~~l~  412 (877)
T KOG1215|consen  344 VGPRCDCMGAKVLPLGART--DSNPCES-DNGGCSQLCVPNSP------GTFKCACSPGYELRLDK--CEASDQPEAFLL  412 (877)
T ss_pred             cCCcccCCccceecccccc--cCCcccc-cCCccceeccCCCC------CceeEecCCCcEeccCC--ceecCCCCcEEE
Confidence            2233333444444433322  4578877 89999999995522      27999999999988777  54   4789999


Q ss_pred             eecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEE
Q psy950          236 FSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEF  311 (407)
Q Consensus       236 ~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAv  311 (407)
                      ++.+..|++++++....   ..|+....++.++++|+.++++||+|... .+|.+...++.....    ++. .++|||+
T Consensus       413 ~s~~~~ir~~~~~~~~~---~~p~~~~~~~~~~d~d~~~~~i~~~d~~~-~~i~~~~~~~~~~~~~~~~g~~-~~~~lav  487 (877)
T KOG1215|consen  413 FSNRHDIRRISLDCSDV---SRPLEGIKNAVALDFDVLNNRIYWADLSD-EKICRASQDGSSECELCGDGLC-IPEGLAV  487 (877)
T ss_pred             EecCccceecccCCCcc---eEEccCCccceEEEEEecCCEEEEEeccC-CeEeeeccCCCccceEeccCcc-ccCcEEE
Confidence            99999999999977632   23455558899999999999999999999 899999988875443    566 9999999


Q ss_pred             eccCCeEEEEeCCCCCeEEEEECCCCcc--c-ccCCCceeEEEEcCCCCeEEEEeCCCCCcccccCCCCCCCcceeEEEe
Q psy950          312 DYADDKILFTQIRPWAKIAWIPTTNPSS--A-SSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILS  388 (407)
Q Consensus       312 Dwi~~~LYwtd~~~~~~I~v~~~~~~~r--l-~~~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg~~~~~~~~~~l~~  388 (407)
                      ||+.+++||+|... ..|++..+++..+  + ..++..|+.+++||..|+|||+||+..++|   .++.+||+.++.|+.
T Consensus       488 D~~~~~~y~tDe~~-~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i---~ra~~dg~~~~~l~~  563 (877)
T KOG1215|consen  488 DWIGDNIYWTDEGN-CLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRI---ERASLDGSERAVLVT  563 (877)
T ss_pred             EeccCCceecccCC-ceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchh---hhhcCCCCCceEEEe
Confidence            99999999999999 8999999998764  3 457799999999999999999999876677   234444444555554


Q ss_pred             CC
Q psy950          389 RG  390 (407)
Q Consensus       389 ~~  390 (407)
                      .+
T Consensus       564 ~~  565 (877)
T KOG1215|consen  564 NG  565 (877)
T ss_pred             CC
Confidence            44

>KOG1214|consensus

Probab=99.93  E-value=1.9e-25  Score=224.42  Aligned_cols=149  Identities=16%  Similarity=0.240  Sum_probs=126.4

Q ss_pred             eeeeeecccceEEeecCCCCC----eeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCC
Q psy950          232 EYLVFSTRTEIRALHLDPTLT----AVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNL  303 (407)
Q Consensus       232 ~~Ll~s~~~~I~~i~l~~~~~----~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~  303 (407)
                      .+|||+....|..+++++..+    ...++.+ ...-+++||||-.+++|||+|... ..|.+++|+|.+...    +|.
T Consensus       991 t~LL~aqg~~I~~lplng~~~~K~~ak~~l~~-p~~IiVGidfDC~e~mvyWtDv~g-~SI~rasL~G~Ep~ti~n~~L~ 1068 (1289)
T KOG1214|consen  991 TFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSL-PGSIIVGIDFDCRERMVYWTDVAG-RSISRASLEGAEPETIVNSGLI 1068 (1289)
T ss_pred             ceEEEeccceEEEeecCcchhchhhhhceEec-ccceeeeeecccccceEEEeecCC-CccccccccCCCCceeecccCC
Confidence            599999999999999988533    1112222 235588999999999999999998 889999999987654    788


Q ss_pred             CCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc--cc-cCCCceeEEEEcCCCCeEEEEeCCC-CCcccccCCCCCC
Q psy950          304 TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS--AS-SNLTNVVGVEFDYADDKILFTQIRP-WAKIAWIPTTNPS  379 (407)
Q Consensus       304 ~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r--l~-~~l~~P~~iavdp~~g~lywtd~~~-~~~ia~~dg~~~~  379 (407)
                       +||||||||+++|+||||+.. .+|+|+.|+|..|  |. ++|-+||+|++||.+|.||||||.+ .++|   ..+.||
T Consensus      1069 -SPEGiAVDh~~Rn~ywtDS~l-D~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkI---ets~mD 1143 (1289)
T KOG1214|consen 1069 -SPEGIAVDHIRRNMYWTDSVL-DKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKI---ETSSMD 1143 (1289)
T ss_pred             -Cccceeeeeccceeeeecccc-chhheeecCCceeeEEEeecccCcceEEeecccCceeeccccccCCcc---eeeccC
Confidence             999999999999999999999 8999999999976  43 6999999999999999999999976 5555   667788


Q ss_pred             CcceeEEE
Q psy950          380 SASVNTIL  387 (407)
Q Consensus       380 ~~~~~~l~  387 (407)
                      |+++..|+
T Consensus      1144 G~NrRili 1151 (1289)
T KOG1214|consen 1144 GENRRILI 1151 (1289)
T ss_pred             CccceEEe
Confidence            88887554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.75  E-value=2.8e-15  Score=165.33  Aligned_cols=281  Identities=14%  Similarity=0.172  Sum_probs=192.0

Q ss_pred             EEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeC-------------CCCCceeEEEeCCCCeEEE
Q psy950           27 LKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSN-------------GISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        27 l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~-------------~~~~P~glaiD~~~~~lYw   93 (407)
                      ++.+.+..|.++|+|+.+|.||++|.+.+ +|.+.+.+|.-...+...             .+..|.||++|..++.||+
T Consensus       562 ~~~s~l~~P~gvavd~~~g~lyVaDs~n~-rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV  640 (1057)
T PLN02919        562 LLTSPLKFPGKLAIDLLNNRLFISDSNHN-RIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV  640 (1057)
T ss_pred             cccccCCCCceEEEECCCCeEEEEECCCC-eEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence            45567888999999999999999999876 999999998754444321             1457999999998899999


Q ss_pred             EeCCCCeEEEEecCCCeEEEEcc-----------------CCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcc
Q psy950           94 VDAKLDLIQKISYNGGNRQIIRR-----------------NLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITL  154 (407)
Q Consensus        94 ~d~~~~~I~~~~~dG~~~~~~~~-----------------~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~  154 (407)
                      +|...++|.++++.+...+++..                 .+.+|.+|++..  +.||++|..++.|.+.+..+ +.   
T Consensus       641 aDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~-g~---  716 (1057)
T PLN02919        641 ADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD-GV---  716 (1057)
T ss_pred             EeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC-Ce---
Confidence            99999999999998877666531                 256899999985  79999999999999888664 21   


Q ss_pred             cEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceee
Q psy950          155 PTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYL  234 (407)
Q Consensus       155 ~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~L  234 (407)
                      ..             ++.       +.        |                           +....++.         
T Consensus       717 v~-------------~~~-------G~--------G---------------------------~~~~~~g~---------  732 (1057)
T PLN02919        717 TR-------------VFS-------GD--------G---------------------------YERNLNGS---------  732 (1057)
T ss_pred             EE-------------EEe-------cC--------C---------------------------ccccCCCC---------
Confidence            11             110       00        0                           00000000         


Q ss_pred             eeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--------------
Q psy950          235 VFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--------------  300 (407)
Q Consensus       235 l~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--------------  300 (407)
                             .      .        ....+..+.+|++++.+++||++|... ++|.++++++.....              
T Consensus       733 -------~------~--------~~~~~~~P~GIavspdG~~LYVADs~n-~~Irv~D~~tg~~~~~~gg~~~~~~~l~~  790 (1057)
T PLN02919        733 -------S------G--------TSTSFAQPSGISLSPDLKELYIADSES-SSIRALDLKTGGSRLLAGGDPTFSDNLFK  790 (1057)
T ss_pred             -------c------c--------ccccccCccEEEEeCCCCEEEEEECCC-CeEEEEECCCCcEEEEEecccccCccccc
Confidence                   0      0        001223467788888888899999888 788888876432110              


Q ss_pred             -----------cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc--c--------------ccCCCceeEEEEc
Q psy950          301 -----------SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS--A--------------SSNLTNVVGVEFD  353 (407)
Q Consensus       301 -----------~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r--l--------------~~~l~~P~~iavd  353 (407)
                                 .+. +|.|||+|.-+ +||.+|..+ ++|.+++.++...  +              ...+..|.||+++
T Consensus       791 fG~~dG~g~~~~l~-~P~Gvavd~dG-~LYVADs~N-~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd  867 (1057)
T PLN02919        791 FGDHDGVGSEVLLQ-HPLGVLCAKDG-QIYVADSYN-HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALG  867 (1057)
T ss_pred             ccCCCCchhhhhcc-CCceeeEeCCC-cEEEEECCC-CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEe
Confidence                       123 78999999754 699999999 8999999876532  1              1245799999999


Q ss_pred             CCCCeEEEEeCCCCCcccccCCCCCCCcceeEEEeCCCccceeec-cchhh
Q psy950          354 YADDKILFTQIRPWAKIAWIPTTNPSSASVNTILSRGKDEKAKIE-NEQDL  403 (407)
Q Consensus       354 p~~g~lywtd~~~~~~ia~~dg~~~~~~~~~~l~~~~~~~~~~~~-~~~~~  403 (407)
                      + .|.||.+|.++. +|..+|-..-....+.+|...+..-+-.+. +.+||
T Consensus       868 ~-dG~lyVaDt~Nn-~Irvid~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  916 (1057)
T PLN02919        868 E-NGRLFVADTNNS-LIRYLDLNKGEAAEILTLELKGVQPPRPKSKSLKRL  916 (1057)
T ss_pred             C-CCCEEEEECCCC-EEEEEECCCCccceeEeeccccccCCCCcccchhhh
Confidence            8 568999997655 353333222222234455555554444443 33444

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.52  E-value=1.6e-11  Score=114.69  Aligned_cols=223  Identities=14%  Similarity=0.155  Sum_probs=151.7

Q ss_pred             cceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEE
Q psy950           35 NTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQII  114 (407)
Q Consensus        35 P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~  114 (407)
                      |.|++.|+..|.|||+|.... +|.|.+.++...+++...   .|.|++++...++||+++....  ...++.....+.+
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~-~i~~~~~~~~~~~~~~~~---~~~G~~~~~~~g~l~v~~~~~~--~~~d~~~g~~~~~   75 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGG-RIYRVDPDTGEVEVIDLP---GPNGMAFDRPDGRLYVADSGGI--AVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTT-EEEEEETTTTEEEEEESS---SEEEEEEECTTSEEEEEETTCE--EEEETTTTEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCC-EEEEEECCCCeEEEEecC---CCceEEEEccCCEEEEEEcCce--EEEecCCCcEEEE
Confidence            678999999999999998764 999999998766554432   3999999977799999997444  4448776666555


Q ss_pred             c-c-----CCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCC
Q psy950          115 R-R-----NLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRT  187 (407)
Q Consensus       115 ~-~-----~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~  187 (407)
                      . .     ....|.+++++. +.||+|+......      .  . ...          -.|..                 
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~------~--~-~~~----------g~v~~-----------------  119 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA------S--G-IDP----------GSVYR-----------------  119 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCT------T--C-GGS----------EEEEE-----------------
T ss_pred             eeccCCCcccCCCceEEEcCCCCEEEEecCCCcc------c--c-ccc----------cceEE-----------------
Confidence            4 1     567888999987 7888886543210      0  0 000          00000                 


Q ss_pred             CcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEE
Q psy950          188 GNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVG  267 (407)
Q Consensus       188 ~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~a  267 (407)
                                                      +.++++                +.             .....+..+-+
T Consensus       120 --------------------------------~~~~~~----------------~~-------------~~~~~~~~pNG  138 (246)
T PF08450_consen  120 --------------------------------IDPDGK----------------VT-------------VVADGLGFPNG  138 (246)
T ss_dssp             --------------------------------EETTSE----------------EE-------------EEEEEESSEEE
T ss_pred             --------------------------------ECCCCe----------------EE-------------EEecCcccccc
Confidence                                            011100                00             00112334568


Q ss_pred             EEEEcCCCEEEEEEecCCceEEEEeCCCCcc-----cc--cC--C-CCccEEEEeccCCeEEEEeCCCCCeEEEEECCCC
Q psy950          268 VEFDYADDKILFTQIRPWAKIAWIPTTNPSS-----AS--SN--L-TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNP  337 (407)
Q Consensus       268 ld~d~~~~~lywsd~~~~~~I~~~~~~~~~~-----~~--~~--~-~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~  337 (407)
                      |++++.++.||++|... ++|.++.++....     ..  .+  . ..|.||++|- .++||.++... ++|.+++.+|.
T Consensus       139 i~~s~dg~~lyv~ds~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~-~~I~~~~p~G~  215 (246)
T PF08450_consen  139 IAFSPDGKTLYVADSFN-GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGG-GRIVVFDPDGK  215 (246)
T ss_dssp             EEEETTSSEEEEEETTT-TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETT-TEEEEEETTSC
T ss_pred             eEECCcchheeeccccc-ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCC-CEEEEECCCcc
Confidence            89999999999999998 8899988864322     11  11  1 1599999998 66899999988 89999999976


Q ss_pred             cc--cccCCCceeEEEE-cCCCCeEEEEe
Q psy950          338 SS--ASSNLTNVVGVEF-DYADDKILFTQ  363 (407)
Q Consensus       338 ~r--l~~~l~~P~~iav-dp~~g~lywtd  363 (407)
                      ..  +.-...+|..+++ -|..+.||.|-
T Consensus       216 ~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  216 LLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            42  3334579999999 57789999985

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.45  E-value=9.4e-11  Score=129.80  Aligned_cols=218  Identities=13%  Similarity=0.186  Sum_probs=150.5

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeC----------------CCCCceeEEEeCCCCeEEEEe
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSN----------------GISMPRDLTIDMQTHDVYWVD   95 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~----------------~~~~P~glaiD~~~~~lYw~d   95 (407)
                      +.+|.|||+|+..+.||++|.+++ +|.+.++.+...+++...                .+..|.++++|+.+++||++|
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~n~-~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad  701 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTENH-ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM  701 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCCCc-eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence            457999999999999999999865 999999877666655421                145799999999999999999


Q ss_pred             CCCCeEEEEecCCCeEEEEc---------------cCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEc
Q psy950           96 AKLDLIQKISYNGGNRQIIR---------------RNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPI  158 (407)
Q Consensus        96 ~~~~~I~~~~~dG~~~~~~~---------------~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i  158 (407)
                      ...++|...+..+....++.               ..+.+|.||++..  ++||++|..+++|.+++..+ +.   ..++
T Consensus       702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t-g~---~~~~  777 (1057)
T PLN02919        702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT-GG---SRLL  777 (1057)
T ss_pred             CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC-Cc---EEEE
Confidence            99999999988655443322               1357899999986  56999999999999999775 21   1111


Q ss_pred             ccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec
Q psy950          159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST  238 (407)
Q Consensus       159 ~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~  238 (407)
                      ..              ..|....+...                        +      |   ..|+...           
T Consensus       778 ~g--------------g~~~~~~~l~~------------------------f------G---~~dG~g~-----------  799 (1057)
T PLN02919        778 AG--------------GDPTFSDNLFK------------------------F------G---DHDGVGS-----------  799 (1057)
T ss_pred             Ee--------------cccccCccccc------------------------c------c---CCCCchh-----------
Confidence            10              00000000000                        0      0   0011000           


Q ss_pred             ccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc-----------------c
Q psy950          239 RTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS-----------------S  301 (407)
Q Consensus       239 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~-----------------~  301 (407)
                                          ...+..+.++.+|+.+ .||++|... ++|.+++.++.....                 .
T Consensus       800 --------------------~~~l~~P~Gvavd~dG-~LYVADs~N-~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~  857 (1057)
T PLN02919        800 --------------------EVLLQHPLGVLCAKDG-QIYVADSYN-HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ  857 (1057)
T ss_pred             --------------------hhhccCCceeeEeCCC-cEEEEECCC-CEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence                                0012335677787654 589999888 888888876543321                 2


Q ss_pred             CCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCC
Q psy950          302 NLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNP  337 (407)
Q Consensus       302 ~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~  337 (407)
                      +. .|.|||+|.-+ +||.+|..+ ++|.+++++..
T Consensus       858 l~-~P~GIavd~dG-~lyVaDt~N-n~Irvid~~~~  890 (1057)
T PLN02919        858 LS-EPAGLALGENG-RLFVADTNN-SLIRYLDLNKG  890 (1057)
T ss_pred             cC-CceEEEEeCCC-CEEEEECCC-CEEEEEECCCC
Confidence            33 79999999865 699999999 89999998765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.28  E-value=1.8e-08  Score=99.05  Aligned_cols=257  Identities=11%  Similarity=0.056  Sum_probs=164.8

Q ss_pred             EEEEEeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC--CCCeEEEEeCCCC-CeEEEEe---CCCCCceeEE
Q psy950           10 LIWAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG--QYPRIGKSYLDGS-KWTSIVS---NGISMPRDLT   83 (407)
Q Consensus        10 ~~~s~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~--~~~~I~r~~~dG~-~~~~l~~---~~~~~P~gla   83 (407)
                      =|+..+++...+....+-......+|.-|++||..++||.++..  ....|....++.. ....++.   ..-..|..|+
T Consensus        14 gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~   93 (345)
T PF10282_consen   14 GIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIA   93 (345)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEE
T ss_pred             cEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEE
Confidence            35555555555555544445568899999999999999999985  4568887777765 3333322   2345899999


Q ss_pred             EeCCCCeEEEEeCCCCeEEEEecCC--CeEE---EEc----------cCCCCceEEEEeC--CEEEEEeCCCCeEEEEec
Q psy950           84 IDMQTHDVYWVDAKLDLIQKISYNG--GNRQ---IIR----------RNLPNPMGIAVHK--SDVYWVDRNLRTVYKASK  146 (407)
Q Consensus        84 iD~~~~~lYw~d~~~~~I~~~~~dG--~~~~---~~~----------~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~  146 (407)
                      +|+.++.||+++...+.|..++++.  .-..   ++.          +...||..+.+.+  .+||.+|....+|...+.
T Consensus        94 ~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~  173 (345)
T PF10282_consen   94 VDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDI  173 (345)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             EecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEE
Confidence            9999999999999999999888864  3222   221          3568899998875  589999988888777665


Q ss_pred             CCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCc
Q psy950          147 LASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKK  226 (407)
Q Consensus       147 ~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~  226 (407)
                      +. .. ...+             .......                                                  
T Consensus       174 ~~-~~-~~l~-------------~~~~~~~--------------------------------------------------  188 (345)
T PF10282_consen  174 DD-DT-GKLT-------------PVDSIKV--------------------------------------------------  188 (345)
T ss_dssp             -T-TS--TEE-------------EEEEEEC--------------------------------------------------
T ss_pred             eC-CC-ceEE-------------Eeecccc--------------------------------------------------
Confidence            54 10 0000             0000000                                                  


Q ss_pred             ccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCC--CCcc------
Q psy950          227 CTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTT--NPSS------  298 (407)
Q Consensus       227 C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~--~~~~------  298 (407)
                                                       .....|..+.|++.++++|+.+... +.|..+.++  ....      
T Consensus       189 ---------------------------------~~G~GPRh~~f~pdg~~~Yv~~e~s-~~v~v~~~~~~~g~~~~~~~~  234 (345)
T PF10282_consen  189 ---------------------------------PPGSGPRHLAFSPDGKYAYVVNELS-NTVSVFDYDPSDGSLTEIQTI  234 (345)
T ss_dssp             ---------------------------------STTSSEEEEEE-TTSSEEEEEETTT-TEEEEEEEETTTTEEEEEEEE
T ss_pred             ---------------------------------ccCCCCcEEEEcCCcCEEEEecCCC-CcEEEEeecccCCceeEEEEe
Confidence                                             0111233444555555555555544 444444443  1100      


Q ss_pred             ------cccCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc-c------cccCCCceeEEEEcCCCCeEEEEeCC
Q psy950          299 ------ASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS-S------ASSNLTNVVGVEFDYADDKILFTQIR  365 (407)
Q Consensus       299 ------~~~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~-r------l~~~l~~P~~iavdp~~g~lywtd~~  365 (407)
                            ..+.. .+.+|++.+.++.||.++.+. ++|.+++++... .      +......|++++++|...+||-++..
T Consensus       235 ~~~~~~~~~~~-~~~~i~ispdg~~lyvsnr~~-~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  235 STLPEGFTGEN-APAEIAISPDGRFLYVSNRGS-NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             ESCETTSCSSS-SEEEEEE-TTSSEEEEEECTT-TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred             eeccccccccC-CceeEEEecCCCEEEEEeccC-CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence                  00112 688999999999999999999 899999986432 1      22356789999999999999999875


Q ss_pred             CC
Q psy950          366 PW  367 (407)
Q Consensus       366 ~~  367 (407)
                      +.
T Consensus       313 s~  314 (345)
T PF10282_consen  313 SN  314 (345)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.25  E-value=2.1e-11  Score=81.14  Aligned_cols=42  Identities=31%  Similarity=0.729  Sum_probs=39.7

Q ss_pred             CEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeC
Q psy950           45 RLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDM   86 (407)
Q Consensus        45 g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~   86 (407)
                      ++|||||++..++|++++|||++++++++.++..|.|||||+
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            689999999767999999999999999999999999999996

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=99.16  E-value=1.8e-11  Score=77.85  Aligned_cols=36  Identities=39%  Similarity=1.026  Sum_probs=30.8

Q ss_pred             ccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcc
Q psy950          184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC  227 (407)
Q Consensus       184 C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C  227 (407)
                      |.. +||+|+|+|++.++       +|+|+||.||.|++|+++|
T Consensus         1 C~~-~NGgC~h~C~~~~g-------~~~C~C~~Gy~L~~D~~tC   36 (36)
T PF14670_consen    1 CSV-NNGGCSHICVNTPG-------SYRCSCPPGYKLAEDGRTC   36 (36)
T ss_dssp             CTT-GGGGSSSEEEEETT-------SEEEE-STTEEE-TTSSSE
T ss_pred             CCC-CCCCcCCCCccCCC-------ceEeECCCCCEECcCCCCC
Confidence            455 79999999999987       5999999999999999998

...

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.11  E-value=3.3e-07  Score=89.27  Aligned_cols=264  Identities=9%  Similarity=0.027  Sum_probs=157.6

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEe--CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecC--
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVS--NGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN--  107 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~--~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~d--  107 (407)
                      ...|..|+++|...+||.+.+.. ..|...++++.....++.  .....|.+|++++.++.||.+....+.|...+++  
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~-~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPE-FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCC-CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence            36799999999999999998764 477766666433322222  1234799999999999999999888999888875  


Q ss_pred             CCeEEEE--ccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCC
Q psy950          108 GGNRQII--RRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNP  183 (407)
Q Consensus       108 G~~~~~~--~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~  183 (407)
                      |...+.+  .....+|.++++.+  +++|.++...+.|...+....+.      +....  +..+      ..+. +.  
T Consensus       113 g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~------l~~~~--~~~~------~~~~-g~--  175 (330)
T PRK11028        113 GIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH------LVAQE--PAEV------TTVE-GA--  175 (330)
T ss_pred             CCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc------ccccC--CCce------ecCC-CC--
Confidence            4222222  23457899999876  58999999888877776553110      00000  0000      0000 00  


Q ss_pred             ccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCC-CCeeeeEee-
Q psy950          184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPT-LTAVPFKTV-  259 (407)
Q Consensus       184 C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~-~~~~~~~~~-  259 (407)
                             ++.|+                       .+.+|++       +++.++  ...|.-+.++.. ..-..+..+ 
T Consensus       176 -------~p~~~-----------------------~~~pdg~-------~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~  218 (330)
T PRK11028        176 -------GPRHM-----------------------VFHPNQQ-------YAYCVNELNSSVDVWQLKDPHGEIECVQTLD  218 (330)
T ss_pred             -------CCceE-----------------------EECCCCC-------EEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence                   11111                       1122222       111111  123333333321 000000011 


Q ss_pred             ------cCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCc--cc-c---cCCCCccEEEEeccCCeEEEEeCCCCC
Q psy950          260 ------SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS--SA-S---SNLTNVVGVEFDYADDKILFTQIRPWA  327 (407)
Q Consensus       260 ------~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~--~~-~---~~~~~~~glAvDwi~~~LYwtd~~~~~  327 (407)
                            .....+.++.+++.++++|.++... +.|..++++...  .. .   ..+..|.++++++.++.||.++... +
T Consensus       219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~-~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~-~  296 (330)
T PRK11028        219 MMPADFSDTRWAADIHITPDGRHLYACDRTA-SLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS-H  296 (330)
T ss_pred             cCCCcCCCCccceeEEECCCCCEEEEecCCC-CeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC-C
Confidence                  1122344688899999999998877 778777664322  11 1   2334789999999999999999888 8


Q ss_pred             eEEEEECCCCc----cc--ccCCCceeEEEE
Q psy950          328 KIAWIPTTNPS----SA--SSNLTNVVGVEF  352 (407)
Q Consensus       328 ~I~v~~~~~~~----rl--~~~l~~P~~iav  352 (407)
                      +|.+++++...    .+  ......|..|++
T Consensus       297 ~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~  327 (330)
T PRK11028        297 HISVYEIDGETGLLTELGRYAVGQGPMWVSV  327 (330)
T ss_pred             cEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence            99998876332    11  123578988887

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.00  E-value=2e-08  Score=93.72  Aligned_cols=115  Identities=19%  Similarity=0.252  Sum_probs=89.6

Q ss_pred             CCCCcceEEEeCCCCEEEEEEcCCC-------CeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEE
Q psy950           31 FRSANTTSPFSPLPRLLYWIDYGQY-------PRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQK  103 (407)
Q Consensus        31 ~~~~P~~iavdp~~g~lywtd~~~~-------~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~  103 (407)
                      ....|-.+++||. |.||+++.+..       ++|+|.+.+|. .+.+. .++..|+||++++.++.||++|...++|.+
T Consensus        84 ~~~~~ND~~vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~  160 (246)
T PF08450_consen   84 PFNRPNDVAVDPD-GNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWR  160 (246)
T ss_dssp             CTEEEEEEEE-TT-S-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEE
T ss_pred             ccCCCceEEEcCC-CCEEEEecCCCccccccccceEEECCCCe-EEEEe-cCcccccceEECCcchheeecccccceeEE
Confidence            3556999999997 77999997531       47999999944 33333 368899999999999999999999999999


Q ss_pred             EecC--CC---eEEEEc--cC-CCCceEEEEeC-CEEEEEeCCCCeEEEEecCC
Q psy950          104 ISYN--GG---NRQIIR--RN-LPNPMGIAVHK-SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       104 ~~~d--G~---~~~~~~--~~-~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~  148 (407)
                      .+++  +.   +++++.  .. ...|-|++++. +.||.+++..++|.+.+..+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G  214 (246)
T PF08450_consen  161 FDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG  214 (246)
T ss_dssp             EEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred             EeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence            9996  33   234443  22 23699999987 89999999999999999885

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.99  E-value=1.1e-06  Score=86.39  Aligned_cols=210  Identities=13%  Similarity=0.043  Sum_probs=141.4

Q ss_pred             CCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCC--CCeEE--EEe----------CCCCCceeEEEeCCCCeEEEEeC
Q psy950           31 FRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDG--SKWTS--IVS----------NGISMPRDLTIDMQTHDVYWVDA   96 (407)
Q Consensus        31 ~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG--~~~~~--l~~----------~~~~~P~glaiD~~~~~lYw~d~   96 (407)
                      .-..|-.|++||..++||.++.+.. .|....++.  +-...  ++.          .....|+.+.+++.++.||.+|.
T Consensus        85 ~g~~p~~i~~~~~g~~l~vany~~g-~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl  163 (345)
T PF10282_consen   85 GGSSPCHIAVDPDGRFLYVANYGGG-SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL  163 (345)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTTT-EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET
T ss_pred             CCCCcEEEEEecCCCEEEEEEccCC-eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec
Confidence            3457999999999999999999864 787777764  33222  221          12346899999999999999999


Q ss_pred             CCCeEEEEecCCCe--EE---E-EccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceee
Q psy950           97 KLDLIQKISYNGGN--RQ---I-IRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDI  168 (407)
Q Consensus        97 ~~~~I~~~~~dG~~--~~---~-~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i  168 (407)
                      +.++|...+++...  ..   . -......|+.|++..  .++|.+.-.++.|...+... ... ..+.+.         
T Consensus       164 G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~-~~g-~~~~~~---------  232 (345)
T PF10282_consen  164 GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP-SDG-SLTEIQ---------  232 (345)
T ss_dssp             TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET-TTT-EEEEEE---------
T ss_pred             CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc-cCC-ceeEEE---------
Confidence            99999999998654  21   1 236778999999987  58999988888777666552 000 111100         


Q ss_pred             EEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecC
Q psy950          169 AIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLD  248 (407)
Q Consensus       169 ~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~  248 (407)
                       ...           +                             .|.++.                             
T Consensus       233 -~~~-----------~-----------------------------~~~~~~-----------------------------  242 (345)
T PF10282_consen  233 -TIS-----------T-----------------------------LPEGFT-----------------------------  242 (345)
T ss_dssp             -EEE-----------S-----------------------------CETTSC-----------------------------
T ss_pred             -Eee-----------e-----------------------------cccccc-----------------------------
Confidence             000           0                             000000                             


Q ss_pred             CCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCc--ccc-----cCCCCccEEEEeccCCeEEEE
Q psy950          249 PTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS--SAS-----SNLTNVVGVEFDYADDKILFT  321 (407)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~--~~~-----~~~~~~~glAvDwi~~~LYwt  321 (407)
                                  ....+.+|.+++.+++||+++... +.|..+.++...  ...     .-+..|.+|++|+.++.||.+
T Consensus       243 ------------~~~~~~~i~ispdg~~lyvsnr~~-~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va  309 (345)
T PF10282_consen  243 ------------GENAPAEIAISPDGRFLYVSNRGS-NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA  309 (345)
T ss_dssp             ------------SSSSEEEEEE-TTSSEEEEEECTT-TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE
T ss_pred             ------------ccCCceeEEEecCCCEEEEEeccC-CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence                        001345677888899999999888 778887775431  111     224479999999999999999


Q ss_pred             eCCCCCeEEEEECCC
Q psy950          322 QIRPWAKIAWIPTTN  336 (407)
Q Consensus       322 d~~~~~~I~v~~~~~  336 (407)
                      +... +.|.+++.+.
T Consensus       310 ~~~s-~~v~vf~~d~  323 (345)
T PF10282_consen  310 NQDS-NTVSVFDIDP  323 (345)
T ss_dssp             ETTT-TEEEEEEEET
T ss_pred             ecCC-CeEEEEEEeC
Confidence            9999 8999987653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.94  E-value=1.4e-06  Score=86.76  Aligned_cols=224  Identities=16%  Similarity=0.130  Sum_probs=157.3

Q ss_pred             CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEE-EEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTS-IVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR  111 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~-l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~  111 (407)
                      ..|.++++++....+|+++.... .|...+.- .+..+ ....+...|.+++++..+.++|..+...+.|..++......
T Consensus        31 ~~~~~v~~~~~g~~~~v~~~~~~-~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~  108 (381)
T COG3391          31 RGPGGVAVNPDGTQVYVANSGSN-DVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV  108 (381)
T ss_pred             CCCceeEEcCccCEEEEEeecCc-eeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence            37999999999999999987654 45544444 33222 23334468999999999999999999999999999655544


Q ss_pred             EEEccCCCCceEEEEeC--CEEEEEeCC--CCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCC
Q psy950          112 QIIRRNLPNPMGIAVHK--SDVYWVDRN--LRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRT  187 (407)
Q Consensus       112 ~~~~~~~~~P~~lav~~--~~lYwtd~~--~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~  187 (407)
                      .........|.++++..  +.+|.++..  ++.+..++..+ .     .++.                            
T Consensus       109 ~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~-----~~~~----------------------------  154 (381)
T COG3391         109 LGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-N-----KVTA----------------------------  154 (381)
T ss_pred             eeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCC-C-----eEEE----------------------------
Confidence            33333344888888865  799999884  45555555443 0     0000                            


Q ss_pred             CcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEE
Q psy950          188 GNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVG  267 (407)
Q Consensus       188 ~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~a  267 (407)
                                                                              .+            ++  ...+.+
T Consensus       155 --------------------------------------------------------~~------------~v--G~~P~~  164 (381)
T COG3391         155 --------------------------------------------------------TI------------PV--GNTPTG  164 (381)
T ss_pred             --------------------------------------------------------EE------------ec--CCCcce
Confidence                                                                    00            00  001245


Q ss_pred             EEEEcCCCEEEEEEecCCceEEEEeCCCCccc-------ccCCCCccEEEEeccCCeEEEEeCCCC-CeEEEEECCCCcc
Q psy950          268 VEFDYADDKILFTQIRPWAKIAWIPTTNPSSA-------SSNLTNVVGVEFDYADDKILFTQIRPW-AKIAWIPTTNPSS  339 (407)
Q Consensus       268 ld~d~~~~~lywsd~~~~~~I~~~~~~~~~~~-------~~~~~~~~glAvDwi~~~LYwtd~~~~-~~I~v~~~~~~~r  339 (407)
                      +++++.++++|.++... +.|..++.++....       ..++..|.+++++..+.++|.++.... +++.+++......
T Consensus       165 ~a~~p~g~~vyv~~~~~-~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v  243 (381)
T COG3391         165 VAVDPDGNKVYVTNSDD-NTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV  243 (381)
T ss_pred             EEECCCCCeEEEEecCC-CeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence            67788888888888666 77777776665433       245559999999999999999998872 3788888877653


Q ss_pred             -----cccCCCceeEEEEcCCCCeEEEEeC
Q psy950          340 -----ASSNLTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       340 -----l~~~l~~P~~iavdp~~g~lywtd~  364 (407)
                           ....+ .|.+++++|...++|..+-
T Consensus       244 ~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~  272 (381)
T COG3391         244 TATDLPVGSG-APRGVAVDPAGKAAYVANS  272 (381)
T ss_pred             EEeccccccC-CCCceeECCCCCEEEEEec
Confidence                 23455 8999999999998888854

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.91  E-value=5.4e-06  Score=80.75  Aligned_cols=262  Identities=10%  Similarity=0.042  Sum_probs=153.3

Q ss_pred             CEEEEEEcCCCCeEEEEeCCCCCeEEEEe--CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCe-EEEEc--cCCC
Q psy950           45 RLLYWIDYGQYPRIGKSYLDGSKWTSIVS--NGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN-RQIIR--RNLP  119 (407)
Q Consensus        45 g~lywtd~~~~~~I~r~~~dG~~~~~l~~--~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~-~~~~~--~~~~  119 (407)
                      .++|.++.... .|...+++......+++  .....|..|++++.++.||++....+.|...++++.. .+.+.  ....
T Consensus         2 ~~~y~~~~~~~-~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~   80 (330)
T PRK11028          2 QIVYIASPESQ-QIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPG   80 (330)
T ss_pred             eEEEEEcCCCC-CEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCC
Confidence            46888877654 78887875222212221  1235799999999999999998888888877776322 22221  2345


Q ss_pred             CceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccce
Q psy950          120 NPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCF  197 (407)
Q Consensus       120 ~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~  197 (407)
                      +|.+|++..  ..||.+....+.|...+....+.  ..+.+.          ..     +  .        ..+|..++ 
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~--~~~~~~----------~~-----~--~--------~~~~~~~~-  132 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI--PVAPIQ----------II-----E--G--------LEGCHSAN-  132 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC--CCCcee----------ec-----c--C--------CCcccEeE-
Confidence            799999985  67998887777666555432111  000000          00     0  0        00111111 


Q ss_pred             ecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCCe----eeeEeecCCcceEEEEEE
Q psy950          198 SYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLTA----VPFKTVSNLTNVVGVEFD  271 (407)
Q Consensus       198 ~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~~----~~~~~~~~~~~~~ald~d  271 (407)
                                            +.+|++       +++++.  ...|.-+.++....-    .....+.....+..+.|+
T Consensus       133 ----------------------~~p~g~-------~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~  183 (330)
T PRK11028        133 ----------------------IDPDNR-------TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH  183 (330)
T ss_pred             ----------------------eCCCCC-------EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC
Confidence                                  112221       122221  123444444331100    001112224557789999


Q ss_pred             cCCCEEEEEEecCCceEEEEeCCCC--cc--cccCC---------CCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc
Q psy950          272 YADDKILFTQIRPWAKIAWIPTTNP--SS--ASSNL---------TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS  338 (407)
Q Consensus       272 ~~~~~lywsd~~~~~~I~~~~~~~~--~~--~~~~~---------~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~  338 (407)
                      +.++++|.++... +.|...+++..  ..  ...+.         ..+.+|++++-++.||.++... ++|.+++.+...
T Consensus       184 pdg~~lyv~~~~~-~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~-~~I~v~~i~~~~  261 (330)
T PRK11028        184 PNQQYAYCVNELN-SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA-SLISVFSVSEDG  261 (330)
T ss_pred             CCCCEEEEEecCC-CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC-CeEEEEEEeCCC
Confidence            9999999999877 77888777531  11  10111         1234689999999999998887 899998875322


Q ss_pred             ---ccc---cCCCceeEEEEcCCCCeEEEEeCCC
Q psy950          339 ---SAS---SNLTNVVGVEFDYADDKILFTQIRP  366 (407)
Q Consensus       339 ---rl~---~~l~~P~~iavdp~~g~lywtd~~~  366 (407)
                         .+.   .....|++++++|...+||-++.++
T Consensus       262 ~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~  295 (330)
T PRK11028        262 SVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS  295 (330)
T ss_pred             CeEEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence               121   1236899999999999999998644

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.73  E-value=4e-08  Score=65.32  Aligned_cols=40  Identities=35%  Similarity=0.667  Sum_probs=36.4

Q ss_pred             CeEEEEeCCCC-eEEEEecCCCeEEEEc-cCCCCceEEEEeC
Q psy950           89 HDVYWVDAKLD-LIQKISYNGGNRQIIR-RNLPNPMGIAVHK  128 (407)
Q Consensus        89 ~~lYw~d~~~~-~I~~~~~dG~~~~~~~-~~~~~P~~lav~~  128 (407)
                      ++|||+|...+ .|+++++||++++++. ..+.+|.||||+.
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            58999999999 9999999999987765 7899999999973

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.71  E-value=0.00019  Score=67.80  Aligned_cols=258  Identities=12%  Similarity=0.055  Sum_probs=147.8

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR  111 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~  111 (407)
                      -..|++++++|..+.+|.+.... ..|...++++......+.. ...|..+++++.++.||.+....+.|...++.....
T Consensus        30 ~~~~~~l~~~~dg~~l~~~~~~~-~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~  107 (300)
T TIGR03866        30 GQRPRGITLSKDGKLLYVCASDS-DTIQVIDLATGEVIGTLPS-GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKV  107 (300)
T ss_pred             CCCCCceEECCCCCEEEEEECCC-CeEEEEECCCCcEEEeccC-CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE
Confidence            45689999999988899887654 3888888875443332322 235788999999889999887778999999876443


Q ss_pred             EEEccCCCCceEEEEeC-C-EEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCc
Q psy950          112 QIIRRNLPNPMGIAVHK-S-DVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGN  189 (407)
Q Consensus       112 ~~~~~~~~~P~~lav~~-~-~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~n  189 (407)
                      .........|.++++.+ + .++.+......+...+..+ +     ..+.         .+.    +   ...+      
T Consensus       108 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-~-----~~~~---------~~~----~---~~~~------  159 (300)
T TIGR03866       108 LAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-Y-----EIVD---------NVL----V---DQRP------  159 (300)
T ss_pred             EeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC-C-----eEEE---------EEE----c---CCCc------
Confidence            22222234578888865 3 3444433323333334322 1     0100         000    0   0000      


Q ss_pred             ccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCCeeeeE-ee----cCC
Q psy950          190 GGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLTAVPFK-TV----SNL  262 (407)
Q Consensus       190 g~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~~~~~~-~~----~~~  262 (407)
                         .++++                       .+|++       +|+++.  ...+.-+.+........+. ..    ...
T Consensus       160 ---~~~~~-----------------------s~dg~-------~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~  206 (300)
T TIGR03866       160 ---RFAEF-----------------------TADGK-------ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEA  206 (300)
T ss_pred             ---cEEEE-----------------------CCCCC-------EEEEEcCCCCEEEEEEcCcceeeeeeeeccccccccc
Confidence               00000                       11111       011111  1122222222110000000 00    011


Q ss_pred             cceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCccc
Q psy950          263 TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA  340 (407)
Q Consensus       263 ~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~rl  340 (407)
                      ..+.++.|++.++.+|++.... ++|..+++.+.....  ..+..+.++++.+-++.||-++... ++|.+.++.+...+
T Consensus       207 ~~~~~i~~s~dg~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-~~i~v~d~~~~~~~  284 (300)
T TIGR03866       207 VQPVGIKLTKDGKTAFVALGPA-NRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVS-NDVSVIDVAALKVI  284 (300)
T ss_pred             CCccceEECCCCCEEEEEcCCC-CeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCC-CeEEEEECCCCcEE
Confidence            2345688898899999887666 678888876544332  2334788999999999999888766 78999999887642


Q ss_pred             --ccCCCceeEEEEcC
Q psy950          341 --SSNLTNVVGVEFDY  354 (407)
Q Consensus       341 --~~~l~~P~~iavdp  354 (407)
                        ..--..|.+|++.|
T Consensus       285 ~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       285 KSIKVGRLPWGVVVRP  300 (300)
T ss_pred             EEEEcccccceeEeCC
Confidence              23348999999865

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4659|consensus

Probab=98.70  E-value=1.3e-05  Score=86.25  Aligned_cols=308  Identities=15%  Similarity=0.109  Sum_probs=190.1

Q ss_pred             EEEEEEeeeeecCCcceEEEcCC--CC------CcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEE-------E-
Q psy950            9 SLIWAIRLALRLLKKKKKLKTSF--RS------ANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSI-------V-   72 (407)
Q Consensus         9 ~~~~s~~~~~~~~~~~~~l~~~~--~~------~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l-------~-   72 (407)
                      +++|.++...+-|...+.-+..+  ++      --.||.---..+++|.++.  -+.|.-+-.||-.|.+-       . 
T Consensus       283 ~ivW~~rt~~l~G~~m~~s~~g~W~LdiHH~ln~~~gIl~kGnG~n~~it~~--Prvitt~mgdG~qR~veC~~C~G~a~  360 (1899)
T KOG4659|consen  283 TIVWQTRTSQLMGATMRKSIGGGWTLDIHHHLNIVNGILEKGNGGNRLITEE--PRVITTAMGDGHQRDVECPKCEGKAD  360 (1899)
T ss_pred             eeeeeeehhhhccccccchhcCcceeecceecccccCeEEecCCcceEeecC--CceEEEeccCcccccccCCCCCCccc
Confidence            68999999988887655544332  11      1244444445678888862  12445555567655431       1 


Q ss_pred             eCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc---cCCCCceEEEEeC--CEEEEEeCCCCeEEEEecC
Q psy950           73 SNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR---RNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKL  147 (407)
Q Consensus        73 ~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~---~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~  147 (407)
                      +..+..|..||.-+ .+-||+-|.  +.|.++..||+-+.++.   ....|-+-||+.+  +.||.+|..+..|+|+.--
T Consensus       361 ~~~L~aPvala~a~-DGSl~VGDf--NyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl  437 (1899)
T KOG4659|consen  361 SISLFAPVALAYAP-DGSLIVGDF--NYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSL  437 (1899)
T ss_pred             cceeeceeeEEEcC-CCcEEEccc--hheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccC
Confidence            12466899999988 578999996  88999999999887765   4567789999988  9999999999999998754


Q ss_pred             CCCC--CcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCC
Q psy950          148 ASTN--ITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPK  225 (407)
Q Consensus       148 ~~g~--~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~  225 (407)
                      . ++  ..+.++++.            ...||......|..   |+              ....++-.-|-|..++.   
T Consensus       438 ~-~~d~~~N~evvaG------------~Ge~Clp~desCGD---Ga--------------lA~dA~L~~PkGIa~dk---  484 (1899)
T KOG4659|consen  438 E-PQDSRNNYEVVAG------------DGEVCLPADESCGD---GA--------------LAQDAQLIFPKGIAFDK---  484 (1899)
T ss_pred             C-ccccccCeeEEec------------cCcCccccccccCc---ch--------------hcccceeccCCceeEcc---
Confidence            3 11  112222221            11222211111321   11              01123334444444333   


Q ss_pred             cccccceeeeeecccceEEeecCCC--------CCe-eeeEeec-------CCcceEEEEEEcCCCEEEEEEecCCceEE
Q psy950          226 KCTTMDEYLVFSTRTEIRALHLDPT--------LTA-VPFKTVS-------NLTNVVGVEFDYADDKILFTQIRPWAKIA  289 (407)
Q Consensus       226 ~C~~~~~~Ll~s~~~~I~~i~l~~~--------~~~-~~~~~~~-------~~~~~~ald~d~~~~~lywsd~~~~~~I~  289 (407)
                           ..+|.|++.+.|+.+.-+..        .+. .|..+-+       .++-|..|++||-++.||+.|..-   |.
T Consensus       485 -----~g~lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nv---vl  556 (1899)
T KOG4659|consen  485 -----MGNLYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNV---VL  556 (1899)
T ss_pred             -----CCcEEEecccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecce---EE
Confidence                 34689999999998865441        111 1111111       157789999999999999998654   44


Q ss_pred             EEeCCCCccc------------------c-----cCCCCccEEEEeccCCeEEEEeCCCCCeEE---EEECCCCcc----
Q psy950          290 WIPTTNPSSA------------------S-----SNLTNVVGVEFDYADDKILFTQIRPWAKIA---WIPTTNPSS----  339 (407)
Q Consensus       290 ~~~~~~~~~~------------------~-----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~---v~~~~~~~r----  339 (407)
                      ++..++..+.                  +     .+. .+.+|||-. .+-||.+++.. .+|.   ++..+|.-.    
T Consensus       557 rit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~-~~r~Iavg~-~G~lyvaEsD~-rriNrvr~~~tdg~i~ilaG  633 (1899)
T KOG4659|consen  557 RITVVHRVRIILGRPTHCDLANATSSASKLADHRTLL-IQRDIAVGT-DGALYVAESDG-RRINRVRKLSTDGTISILAG  633 (1899)
T ss_pred             EEccCccEEEEcCCccccccCCCchhhhhhhhhhhhh-hhhceeecC-CceEEEEeccc-hhhhheEEeccCceEEEecC
Confidence            4433322110                  0     233 678899865 46899998876 4443   333333210    


Q ss_pred             ---------------------cc--cCCCceeEEEEcCCCCeEEEEeCCC
Q psy950          340 ---------------------AS--SNLTNVVGVEFDYADDKILFTQIRP  366 (407)
Q Consensus       340 ---------------------l~--~~l~~P~~iavdp~~g~lywtd~~~  366 (407)
                                           ..  ..++.|.++||-| .|.+|-+|.++
T Consensus       634 a~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsP-dg~v~IAD~gN  682 (1899)
T KOG4659|consen  634 AKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSP-DGDVIIADSGN  682 (1899)
T ss_pred             CCCCCCcccccCCccccccchhhhccccCCcceEEECC-CCcEEEecCCc
Confidence                                 01  3678999999999 58999999986

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.68  E-value=2.3e-05  Score=72.93  Aligned_cols=192  Identities=13%  Similarity=0.145  Sum_probs=113.3

Q ss_pred             CCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcc
Q psy950           77 SMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITL  154 (407)
Q Consensus        77 ~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~  154 (407)
                      ..+.||+.++.++.||.+.-....|...+++|.-.+.+. .....|-||++-+ +.+..++-+.+.++.+....  .+..
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~--~~~~   99 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD--DTTS   99 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE------TT
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec--cccc
Confidence            368999999999999999999999999999987665543 6678999999988 55555555556665555432  0000


Q ss_pred             cEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceee
Q psy950          155 PTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYL  234 (407)
Q Consensus       155 ~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~L  234 (407)
                      ...           .                                                                 
T Consensus       100 ~~~-----------~-----------------------------------------------------------------  103 (248)
T PF06977_consen  100 LDR-----------A-----------------------------------------------------------------  103 (248)
T ss_dssp             --E-----------E-----------------------------------------------------------------
T ss_pred             cch-----------h-----------------------------------------------------------------
Confidence            000           0                                                                 


Q ss_pred             eeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeC--CCCccc----------c-c
Q psy950          235 VFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPT--TNPSSA----------S-S  301 (407)
Q Consensus       235 l~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~--~~~~~~----------~-~  301 (407)
                            ...++.+...        .......-+|+||+.++++|.+.......|+.++.  .+....          . .
T Consensus       104 ------~~~~~~l~~~--------~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen  104 ------DVQKISLGFP--------NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             ------EEEEEE---S-----------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             ------hceEEecccc--------cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence                  0000111000        00112246889999999999886554256777765  222111          0 3


Q ss_pred             CCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc----c-------ccCCCceeEEEEcCCCCeEEEEe
Q psy950          302 NLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS----A-------SSNLTNVVGVEFDYADDKILFTQ  363 (407)
Q Consensus       302 ~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r----l-------~~~l~~P~~iavdp~~g~lywtd  363 (407)
                      +. .+.++++|+.+++||.....+ ..|..++.+|.-.    +       ...+.+|+|||+|+ .|.||-+.
T Consensus       170 ~~-d~S~l~~~p~t~~lliLS~es-~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvs  239 (248)
T PF06977_consen  170 VR-DLSGLSYDPRTGHLLILSDES-RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVS  239 (248)
T ss_dssp             SS----EEEEETTTTEEEEEETTT-TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEE
T ss_pred             ec-cccceEEcCCCCeEEEEECCC-CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEc
Confidence            44 789999999999999999998 7898888777631    2       23457999999998 68999986

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=98.67  E-value=6.9e-08  Score=64.23  Aligned_cols=42  Identities=24%  Similarity=0.327  Sum_probs=37.8

Q ss_pred             EEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCe
Q psy950           26 KLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKW   68 (407)
Q Consensus        26 ~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~   68 (407)
                      +++..++..|.|||+||..++|||+|+.. ..|+|+++||+++
T Consensus         2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~-~~I~~~~~~g~~~   43 (43)
T smart00135        2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGL-DVIEVANLDGTNR   43 (43)
T ss_pred             EEEECCCCCcCEEEEeecCCEEEEEeCCC-CEEEEEeCCCCCC
Confidence            46677899999999999999999999997 4999999999864

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=1.5e-05  Score=79.35  Aligned_cols=231  Identities=14%  Similarity=0.110  Sum_probs=155.0

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC--CCCeEEEEecCCC
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA--KLDLIQKISYNGG  109 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~--~~~~I~~~~~dG~  109 (407)
                      ...|.++++++...++|.++...+ .|...+++.......+..+. .|.++++|+.++.+|+++.  ..++|..++-...
T Consensus        73 ~~~p~~i~v~~~~~~vyv~~~~~~-~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~  150 (381)
T COG3391          73 GVYPAGVAVNPAGNKVYVTTGDSN-TVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN  150 (381)
T ss_pred             CccccceeeCCCCCeEEEecCCCC-eEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence            367999999999999999988754 88888855554444443333 8999999999999999999  5799999988866


Q ss_pred             eEEEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCC
Q psy950          110 NRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRT  187 (407)
Q Consensus       110 ~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~  187 (407)
                      ...........|.++++..  ..+|.++...+.|..++..+  .    .+..                 +. ....+   
T Consensus       151 ~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~--~----~v~~-----------------~~-~~~~~---  203 (381)
T COG3391         151 KVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSG--N----SVVR-----------------GS-VGSLV---  203 (381)
T ss_pred             eEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCC--c----ceec-----------------cc-ccccc---
Confidence            6533344455889999976  67999997777776666332  1    0100                 00 00000   


Q ss_pred             CcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEE
Q psy950          188 GNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVG  267 (407)
Q Consensus       188 ~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~a  267 (407)
                                                                                              .....+..
T Consensus       204 ------------------------------------------------------------------------~~~~~P~~  211 (381)
T COG3391         204 ------------------------------------------------------------------------GVGTGPAG  211 (381)
T ss_pred             ------------------------------------------------------------------------ccCCCCce
Confidence                                                                                    00111233


Q ss_pred             EEEEcCCCEEEEEEecC-CceEEEEeCCCCcccc---cCCC-CccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcccc-
Q psy950          268 VEFDYADDKILFTQIRP-WAKIAWIPTTNPSSAS---SNLT-NVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS-  341 (407)
Q Consensus       268 ld~d~~~~~lywsd~~~-~~~I~~~~~~~~~~~~---~~~~-~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~rl~-  341 (407)
                      +.+++.++++|.++... ...+..++........   ..+. .+.+++++|.++.+|..+... +.+.+++........ 
T Consensus       212 i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~-~~V~vid~~~~~v~~~  290 (381)
T COG3391         212 IAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG-GTVSVIDGATDRVVKT  290 (381)
T ss_pred             EEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCC-CeEEEEeCCCCceeee
Confidence            44555566666665543 1356666655543332   1221 589999999999999999987 899999987765421 


Q ss_pred             -----cCCCceeEEEEcCCCCeEEEEeC
Q psy950          342 -----SNLTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       342 -----~~l~~P~~iavdp~~g~lywtd~  364 (407)
                           .-...|..++..+.....|-+.+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (381)
T COG3391         291 GPTGNEALGEPVSIAISPLYDTNYVSVK  318 (381)
T ss_pred             ecccccccccceeccceeecccccceee
Confidence                 23345888988888777777763

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.63  E-value=8.9e-05  Score=72.45  Aligned_cols=254  Identities=9%  Similarity=0.042  Sum_probs=151.2

Q ss_pred             CCEEEEEEcCC---CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC---------CCCeEEEEecCCCeE
Q psy950           44 PRLLYWIDYGQ---YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA---------KLDLIQKISYNGGNR  111 (407)
Q Consensus        44 ~g~lywtd~~~---~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~---------~~~~I~~~~~dG~~~  111 (407)
                      ..++|.+|...   ..+|...+.+.....--+..+ ..|+++ +.+.++.||.+..         ..+.|..+|..-...
T Consensus        12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G-~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~   89 (352)
T TIGR02658        12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGG-FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP   89 (352)
T ss_pred             CCEEEEECCcccccCceEEEEECCCCEEEEEEEcc-CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence            46688888752   147888877765554445544 489997 9999999999999         889999999865444


Q ss_pred             -EEEc-------cCCCCceEEEEe--CCEEEEEeCC-CCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCC
Q psy950          112 -QIIR-------RNLPNPMGIAVH--KSDVYWVDRN-LRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDE  180 (407)
Q Consensus       112 -~~~~-------~~~~~P~~lav~--~~~lYwtd~~-~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~  180 (407)
                       ..+.       .....|..+++.  +.+||..++. .+.|..++... +     .++. .+.-|-+-.+|         
T Consensus        90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~-~-----kvv~-ei~vp~~~~vy---------  153 (352)
T TIGR02658        90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG-K-----AFVR-MMDVPDCYHIF---------  153 (352)
T ss_pred             EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCC-C-----cEEE-EEeCCCCcEEE---------
Confidence             2222       124455566664  4689999988 78898899875 2     1221 01112222222         


Q ss_pred             CCCccCCCcccccccceecCCCCCCCCcceEEecCCCccc----cCCCCccc---------------cc-----c-eeee
Q psy950          181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS----ASDPKKCT---------------TM-----D-EYLV  235 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l----~~d~~~C~---------------~~-----~-~~Ll  235 (407)
                                      .....       ++.-.|..|-.+    +.+|+.-.               .|     + ..++
T Consensus       154 ----------------~t~e~-------~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~  210 (352)
T TIGR02658       154 ----------------PTAND-------TFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW  210 (352)
T ss_pred             ----------------EecCC-------ccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE
Confidence                            21111       122333333111    11111000               01     1 2334


Q ss_pred             eecccceEEeecCCCCC--eeeeEeecC-----CcceEE---EEEEcCCCEEEEEEecC--------CceEEEEeCCCCc
Q psy950          236 FSTRTEIRALHLDPTLT--AVPFKTVSN-----LTNVVG---VEFDYADDKILFTQIRP--------WAKIAWIPTTNPS  297 (407)
Q Consensus       236 ~s~~~~I~~i~l~~~~~--~~~~~~~~~-----~~~~~a---ld~d~~~~~lywsd~~~--------~~~I~~~~~~~~~  297 (407)
                      ++....+..+.+.....  ..++..+..     .-.+.+   +++++.++++|+.....        -+.|..++..+..
T Consensus       211 vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k  290 (352)
T TIGR02658       211 PTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK  290 (352)
T ss_pred             EecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence            44445666666533211  111111110     011222   88999999999954221        1468888887766


Q ss_pred             ccc--cCCCCccEEEEeccCC-eEEEEeCCCCCeEEEEECCCCcc
Q psy950          298 SAS--SNLTNVVGVEFDYADD-KILFTQIRPWAKIAWIPTTNPSS  339 (407)
Q Consensus       298 ~~~--~~~~~~~glAvDwi~~-~LYwtd~~~~~~I~v~~~~~~~r  339 (407)
                      +..  .++..+++|++..-.+ .||-++... +.|.+++......
T Consensus       291 vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s-~~VsViD~~t~k~  334 (352)
T TIGR02658       291 RLRKIELGHEIDSINVSQDAKPLLYALSTGD-KTLYIFDAETGKE  334 (352)
T ss_pred             EEEEEeCCCceeeEEECCCCCeEEEEeCCCC-CcEEEEECcCCeE
Confidence            554  5666999999999999 999999888 8899999876643

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.61  E-value=3.3e-05  Score=76.62  Aligned_cols=136  Identities=14%  Similarity=0.108  Sum_probs=93.4

Q ss_pred             EEcC--CCCCcceEEEeCCCCEEEEEEcCC----------C-CeEEEEeC---CCCC-eEEEEeCCCCCceeEEEeCCCC
Q psy950           27 LKTS--FRSANTTSPFSPLPRLLYWIDYGQ----------Y-PRIGKSYL---DGSK-WTSIVSNGISMPRDLTIDMQTH   89 (407)
Q Consensus        27 l~~~--~~~~P~~iavdp~~g~lywtd~~~----------~-~~I~r~~~---dG~~-~~~l~~~~~~~P~glaiD~~~~   89 (407)
                      ++.+  .+.+|++||+|+. |.||.++...          . .+|.+..-   ||.- ...++..++..|+||++... +
T Consensus         6 l~A~~p~~~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~-G   83 (367)
T TIGR02604         6 LFAAEPLLRNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG-G   83 (367)
T ss_pred             EEECCCccCCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC-C
Confidence            4444  3899999999988 8899998521          1 27777654   4543 33455567889999999874 4


Q ss_pred             eEEEEeCCCCeEEEE-ecCCC-----eEEEEccC--------CCCceEEEEeC-CEEEEEeCCC----------------
Q psy950           90 DVYWVDAKLDLIQKI-SYNGG-----NRQIIRRN--------LPNPMGIAVHK-SDVYWVDRNL----------------  138 (407)
Q Consensus        90 ~lYw~d~~~~~I~~~-~~dG~-----~~~~~~~~--------~~~P~~lav~~-~~lYwtd~~~----------------  138 (407)
                       ||+++.  ..|.++ +.+|.     .++++...        ...|.++++.. ++||+++...                
T Consensus        84 -lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~  160 (367)
T TIGR02604        84 -VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ  160 (367)
T ss_pred             -EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence             999874  467766 44442     34444421        22377899976 6999987732                


Q ss_pred             ---CeEEEEecCCCCCCcccEEcccCCCCceeeEEe
Q psy950          139 ---RTVYKASKLASTNITLPTPIRTGLSGLRDIAIF  171 (407)
Q Consensus       139 ---~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~  171 (407)
                         +.|+|++.++    ...+++..++..|.++.+.
T Consensus       161 ~~~g~i~r~~pdg----~~~e~~a~G~rnp~Gl~~d  192 (367)
T TIGR02604       161 GLGGGLFRYNPDG----GKLRVVAHGFQNPYGHSVD  192 (367)
T ss_pred             ccCceEEEEecCC----CeEEEEecCcCCCccceEC
Confidence               3688888775    2467778888888888774

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.58  E-value=0.00032  Score=66.88  Aligned_cols=293  Identities=10%  Similarity=0.022  Sum_probs=174.5

Q ss_pred             CEEEEEEcC--CCCeEEEEeCCCCCe-EEEEe--CCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCC-eEEEEc-
Q psy950           45 RLLYWIDYG--QYPRIGKSYLDGSKW-TSIVS--NGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGG-NRQIIR-  115 (407)
Q Consensus        45 g~lywtd~~--~~~~I~r~~~dG~~~-~~l~~--~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~-~~~~~~-  115 (407)
                      .++|.....  ....|++.+||+..- ..+..  ..+..|.-|++++..++||.+...  .+.|.....|+. .+-.+. 
T Consensus         3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln   82 (346)
T COG2706           3 QTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN   82 (346)
T ss_pred             eEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee
Confidence            355665443  123899999994432 22221  357799999999999999999876  788888888864 332222 


Q ss_pred             ---cCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcc
Q psy950          116 ---RNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNG  190 (407)
Q Consensus       116 ---~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng  190 (407)
                         .....|--+++++  .+||.+....+.|.+......|..  ..++        + .+.|...    +.++-+.   .
T Consensus        83 ~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l--~~~v--------~-~~~h~g~----~p~~rQ~---~  144 (346)
T COG2706          83 RQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL--QPVV--------Q-VVKHTGS----GPHERQE---S  144 (346)
T ss_pred             ccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc--ccce--------e-eeecCCC----CCCcccc---C
Confidence               3456778999987  588888888886654443321211  1111        1 1122221    1111111   1


Q ss_pred             cccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCee-eeEeecCCcceEEEE
Q psy950          191 GCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAV-PFKTVSNLTNVVGVE  269 (407)
Q Consensus       191 ~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~-~~~~~~~~~~~~ald  269 (407)
                      .=.|.-..+|.      +.|.|.|.-|.    |        .+.+         ..+++...+. ....+....-+.-|.
T Consensus       145 ~h~H~a~~tP~------~~~l~v~DLG~----D--------ri~~---------y~~~dg~L~~~~~~~v~~G~GPRHi~  197 (346)
T COG2706         145 PHVHSANFTPD------GRYLVVPDLGT----D--------RIFL---------YDLDDGKLTPADPAEVKPGAGPRHIV  197 (346)
T ss_pred             CccceeeeCCC------CCEEEEeecCC----c--------eEEE---------EEcccCccccccccccCCCCCcceEE
Confidence            11122222333      25677775542    1        1122         2222111100 000123334466789


Q ss_pred             EEcCCCEEEEEEecCCceEEEEeCCCCcc-----c-----c----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECC
Q psy950          270 FDYADDKILFTQIRPWAKIAWIPTTNPSS-----A-----S----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTT  335 (407)
Q Consensus       270 ~d~~~~~lywsd~~~~~~I~~~~~~~~~~-----~-----~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~  335 (407)
                      |++.++..|....-. ++|.....+....     +     +    +-. ....|.+...++.||-.|.+. ++|.++..+
T Consensus       198 FHpn~k~aY~v~EL~-stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~-~~aaIhis~dGrFLYasNRg~-dsI~~f~V~  274 (346)
T COG2706         198 FHPNGKYAYLVNELN-STVDVLEYNPAVGKFEELQTIDTLPEDFTGTN-WAAAIHISPDGRFLYASNRGH-DSIAVFSVD  274 (346)
T ss_pred             EcCCCcEEEEEeccC-CEEEEEEEcCCCceEEEeeeeccCccccCCCC-ceeEEEECCCCCEEEEecCCC-CeEEEEEEc
Confidence            999999999998887 7888877766311     0     1    223 567899999999999999999 899888776


Q ss_pred             CCc---cc----ccCCCceeEEEEcCCCCeEEEEeCCCCCcccccCCCCCCCcceeEEE
Q psy950          336 NPS---SA----SSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTIL  387 (407)
Q Consensus       336 ~~~---rl----~~~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg~~~~~~~~~~l~  387 (407)
                      ...   ++    .+....||+..++|..++|+-+...+.. | .+...+..+..++.+.
T Consensus       275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~-i-~vf~~d~~TG~L~~~~  331 (346)
T COG2706         275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN-I-TVFERDKETGRLTLLG  331 (346)
T ss_pred             CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCc-E-EEEEEcCCCceEEecc
Confidence            432   22    2355779999999999999998764433 2 2233455555555444

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=98.53  E-value=2.3e-07  Score=61.60  Aligned_cols=42  Identities=33%  Similarity=0.699  Sum_probs=37.8

Q ss_pred             EEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE
Q psy950           70 SIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR  111 (407)
Q Consensus        70 ~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~  111 (407)
                      +++..++..|+|||+|+.+++|||+|.....|++++++|.++
T Consensus         2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~~   43 (43)
T smart00135        2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR   43 (43)
T ss_pred             EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCCC
Confidence            455668889999999999999999999999999999999753

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.46  E-value=0.0014  Score=61.67  Aligned_cols=275  Identities=13%  Similarity=0.072  Sum_probs=152.1

Q ss_pred             CEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEccCCCCceEE
Q psy950           45 RLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGI  124 (407)
Q Consensus        45 g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~l  124 (407)
                      +.+|.+.... ..|.+.+++.......+. ....|.++++++.++.+|.+....+.|...+.++............|..+
T Consensus         1 ~~~~~s~~~d-~~v~~~d~~t~~~~~~~~-~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   78 (300)
T TIGR03866         1 EKAYVSNEKD-NTISVIDTATLEVTRTFP-VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELF   78 (300)
T ss_pred             CcEEEEecCC-CEEEEEECCCCceEEEEE-CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEE
Confidence            3577777655 388888886444433343 23468899999988899999888889999998765442222223456677


Q ss_pred             EEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCC
Q psy950          125 AVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVE  202 (407)
Q Consensus       125 av~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~  202 (407)
                      ++.+  +.+|.+....+.|...+... +     ..+.          .+..      ...+.         .++      
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~-~-----~~~~----------~~~~------~~~~~---------~~~------  121 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIET-R-----KVLA----------EIPV------GVEPE---------GMA------  121 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCC-C-----eEEe----------EeeC------CCCcc---------eEE------
Confidence            7765  46777766566676666553 1     1110          0000      00000         000      


Q ss_pred             CCCCCcceEEecCCCccccCCCCcccccceeeeeeccc--ceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEE
Q psy950          203 FPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRT--EIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFT  280 (407)
Q Consensus       203 ~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~--~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lyws  280 (407)
                                .+       +|+.       +++++...  .+..+.+....  . ...+.....+.++.+++.++.+|.+
T Consensus       122 ----------~~-------~dg~-------~l~~~~~~~~~~~~~d~~~~~--~-~~~~~~~~~~~~~~~s~dg~~l~~~  174 (300)
T TIGR03866       122 ----------VS-------PDGK-------IVVNTSETTNMAHFIDTKTYE--I-VDNVLVDQRPRFAEFTADGKELWVS  174 (300)
T ss_pred             ----------EC-------CCCC-------EEEEEecCCCeEEEEeCCCCe--E-EEEEEcCCCccEEEECCCCCEEEEE
Confidence                      01       1111       01111110  11111111110  0 0001111234567788888888776


Q ss_pred             EecCCceEEEEeCCCCcccc-------c---CCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc--cccCCCcee
Q psy950          281 QIRPWAKIAWIPTTNPSSAS-------S---NLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS--ASSNLTNVV  348 (407)
Q Consensus       281 d~~~~~~I~~~~~~~~~~~~-------~---~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r--l~~~l~~P~  348 (407)
                      .... +.|...++.+.....       +   ....+.+++++.-++.+|.+.... ++|.+.++.....  ....-..|.
T Consensus       175 ~~~~-~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~  252 (300)
T TIGR03866       175 SEIG-GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-NRVAVVDAKTYEVLDYLLVGQRVW  252 (300)
T ss_pred             cCCC-CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC-CeEEEEECCCCcEEEEEEeCCCcc
Confidence            5545 667777776543221       1   011467899999999999988777 7899998875432  222335788


Q ss_pred             EEEEcCCCCeEEEEeCCCCCcccccCCCCCC-CcceeEEEeCCC
Q psy950          349 GVEFDYADDKILFTQIRPWAKIAWIPTTNPS-SASVNTILSRGK  391 (407)
Q Consensus       349 ~iavdp~~g~lywtd~~~~~~ia~~dg~~~~-~~~~~~l~~~~~  391 (407)
                      +++++|...+||-+. +....|.-+   +++ +..++.+...+.
T Consensus       253 ~~~~~~~g~~l~~~~-~~~~~i~v~---d~~~~~~~~~~~~~~~  292 (300)
T TIGR03866       253 QLAFTPDEKYLLTTN-GVSNDVSVI---DVAALKVIKSIKVGRL  292 (300)
T ss_pred             eEEECCCCCEEEEEc-CCCCeEEEE---ECCCCcEEEEEEcccc
Confidence            999999988888764 223344222   222 444566665444

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.44  E-value=9e-05  Score=72.44  Aligned_cols=260  Identities=14%  Similarity=0.098  Sum_probs=142.7

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeC------CCCCceeEEEeC---CCCeEEEEeCCC----
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSN------GISMPRDLTIDM---QTHDVYWVDAKL----   98 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~------~~~~P~glaiD~---~~~~lYw~d~~~----   98 (407)
                      |++|++|++.|. |.||.++..  .+|.+...||.....+...      +..-+.|||+|+   .++.||++-...    
T Consensus         1 L~~P~~~a~~pd-G~l~v~e~~--G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~   77 (331)
T PF07995_consen    1 LNNPRSMAFLPD-GRLLVAERS--GRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG   77 (331)
T ss_dssp             ESSEEEEEEETT-SCEEEEETT--TEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred             CCCceEEEEeCC-CcEEEEeCC--ceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence            478999999998 899999883  5999999888873333321      234578999999   468999987643    


Q ss_pred             ----CeEEEEecCCC-----eEEEEc----c--CCCC-ceEEEEeC-CEEEEEeCC-------------CCeEEEEecCC
Q psy950           99 ----DLIQKISYNGG-----NRQIIR----R--NLPN-PMGIAVHK-SDVYWVDRN-------------LRTVYKASKLA  148 (407)
Q Consensus        99 ----~~I~~~~~dG~-----~~~~~~----~--~~~~-P~~lav~~-~~lYwtd~~-------------~~~I~~~~~~~  148 (407)
                          .+|.+..++..     ..+++.    .  ...| -.+|++.. ++||++-..             .++|.|++.++
T Consensus        78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG  157 (331)
T PF07995_consen   78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG  157 (331)
T ss_dssp             SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred             CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC
Confidence                57888887654     223333    1  2233 35677775 899998531             34799999876


Q ss_pred             CC---C------CcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcc--cccccceecCCCCCCCCcceEEe---c
Q psy950          149 ST---N------ITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNG--GCEQLCFSYPVEFPQNKLHYKCD---C  214 (407)
Q Consensus       149 ~g---~------~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng--~Cs~lC~~~~~~~~~~~~~~~C~---C  214 (407)
                      +.   +      ....++++.++..|.+++.... .    +.-.|..  ||  .=+.+.+..++.+-   +-..|.   +
T Consensus       158 ~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~-t----g~l~~~d--~G~~~~dein~i~~G~nY---GWP~~~~~~~  227 (331)
T PF07995_consen  158 SIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPN-T----GRLWAAD--NGPDGWDEINRIEPGGNY---GWPYCEGGPK  227 (331)
T ss_dssp             SB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETT-T----TEEEEEE--E-SSSSEEEEEE-TT-B-----TTTBSSSCS
T ss_pred             cCCCCCccccCCCceEEEEEeCCCccccEEEECC-C----CcEEEEc--cCCCCCcEEEEeccCCcC---CCCCCcCCCC
Confidence            20   0      1245777888889998887532 1    1111211  11  11344444444310   001111   0


Q ss_pred             CCCccccCCCCcccc-cceeeeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEE------cCCCEEEEEEecCCce
Q psy950          215 ATGTPSASDPKKCTT-MDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFD------YADDKILFTQIRPWAK  287 (407)
Q Consensus       215 ~~G~~l~~d~~~C~~-~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d------~~~~~lywsd~~~~~~  287 (407)
                      ..|... .+...|.. ..+...|...                       ..+.++.|-      .-.+.+|+++... .+
T Consensus       228 ~~~~~~-~~~~~~~~~~~P~~~~~~~-----------------------~ap~G~~~y~g~~fp~~~g~~~~~~~~~-~~  282 (331)
T PF07995_consen  228 YSGPPI-GDAPSCPGFVPPVFAYPPH-----------------------SAPTGIIFYRGSAFPEYRGDLFVADYGG-GR  282 (331)
T ss_dssp             TTSS-E-CTGSS-TTS---SEEETTT-------------------------EEEEEEE-SSSSGGGTTEEEEEETTT-TE
T ss_pred             CCCCcc-ccccCCCCcCccceeecCc-----------------------cccCceEEECCccCccccCcEEEecCCC-CE
Confidence            001100 00111111 1122222222                       223333332      2356788888877 78


Q ss_pred             EEEEeCCCCcccc-------cCCCCccEEEEeccCCeEEEEeCCCCCeEEE
Q psy950          288 IAWIPTTNPSSAS-------SNLTNVVGVEFDYADDKILFTQIRPWAKIAW  331 (407)
Q Consensus       288 I~~~~~~~~~~~~-------~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v  331 (407)
                      |.++.++......       .....|.+|++++. +.||.++... ++|.+
T Consensus       283 i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD-G~Lyv~~d~~-G~iyR  331 (331)
T PF07995_consen  283 IWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD-GALYVSDDSD-GKIYR  331 (331)
T ss_dssp             EEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT-SEEEEEE-TT-TTEEE
T ss_pred             EEEEeeecCCCccceEEccccCCCCceEEEEcCC-CeEEEEECCC-CeEeC
Confidence            8888876432211       34447899999996 8899998877 78864

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.22  E-value=0.0038  Score=59.68  Aligned_cols=266  Identities=9%  Similarity=0.025  Sum_probs=159.9

Q ss_pred             eeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCC-CeEEEEeCC---CCCceeEEEeCCCCeE
Q psy950           17 ALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGS-KWTSIVSNG---ISMPRDLTIDMQTHDV   91 (407)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~-~~~~l~~~~---~~~P~glaiD~~~~~l   91 (407)
                      +.-.|......+...+.+|.=|+++|..+.||-.... ....|.....|.. .+.+++...   ...|.-+++|+.++.|
T Consensus        24 d~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~v  103 (346)
T COG2706          24 DTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFV  103 (346)
T ss_pred             eCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEE
Confidence            3334444444555668899999999999999998764 3468888888875 676666532   2346999999999999


Q ss_pred             EEEeCCCCeEEEEec--CCCeEEE---Ec--cC-------C--CCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCccc
Q psy950           92 YWVDAKLDLIQKISY--NGGNRQI---IR--RN-------L--PNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLP  155 (407)
Q Consensus        92 Yw~d~~~~~I~~~~~--dG~~~~~---~~--~~-------~--~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~  155 (407)
                      |.+....+.|.+..+  ||.-...   +.  ..       -  .|+..++-++.+|...|-...+|...+... |.....
T Consensus       104 f~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d-g~L~~~  182 (346)
T COG2706         104 FVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD-GKLTPA  182 (346)
T ss_pred             EEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc-Cccccc
Confidence            999999999888776  4544322   22  11       2  233444445578999999888776655553 321111


Q ss_pred             EEcc-cCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceee
Q psy950          156 TPIR-TGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYL  234 (407)
Q Consensus       156 ~~i~-~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~L  234 (407)
                      .... ..-.+|..|. ||+..+                                =.-|.|.-    +         ....
T Consensus       183 ~~~~v~~G~GPRHi~-FHpn~k--------------------------------~aY~v~EL----~---------stV~  216 (346)
T COG2706         183 DPAEVKPGAGPRHIV-FHPNGK--------------------------------YAYLVNEL----N---------STVD  216 (346)
T ss_pred             cccccCCCCCcceEE-EcCCCc--------------------------------EEEEEecc----C---------CEEE
Confidence            0000 0012222221 222110                                01122210    0         0011


Q ss_pred             eeecc---cceEE---eecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeC--CCCcccc-----c
Q psy950          235 VFSTR---TEIRA---LHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPT--TNPSSAS-----S  301 (407)
Q Consensus       235 l~s~~---~~I~~---i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~--~~~~~~~-----~  301 (407)
                      ++.-.   .++..   ++.-+.+       ..+.....||-+.+.++.||.+|... +.|....+  +++....     .
T Consensus       217 v~~y~~~~g~~~~lQ~i~tlP~d-------F~g~~~~aaIhis~dGrFLYasNRg~-dsI~~f~V~~~~g~L~~~~~~~t  288 (346)
T COG2706         217 VLEYNPAVGKFEELQTIDTLPED-------FTGTNWAAAIHISPDGRFLYASNRGH-DSIAVFSVDPDGGKLELVGITPT  288 (346)
T ss_pred             EEEEcCCCceEEEeeeeccCccc-------cCCCCceeEEEECCCCCEEEEecCCC-CeEEEEEEcCCCCEEEEEEEecc
Confidence            11111   11221   2222222       22345567889999999999999987 66655544  4332111     3


Q ss_pred             CCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc
Q psy950          302 NLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS  338 (407)
Q Consensus       302 ~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~  338 (407)
                      -+..|.+..++.-++.|+-+++.. +.|.++..+..+
T Consensus       289 eg~~PR~F~i~~~g~~Liaa~q~s-d~i~vf~~d~~T  324 (346)
T COG2706         289 EGQFPRDFNINPSGRFLIAANQKS-DNITVFERDKET  324 (346)
T ss_pred             CCcCCccceeCCCCCEEEEEccCC-CcEEEEEEcCCC
Confidence            343699999999999999999999 889998877653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.15  E-value=0.0001  Score=70.88  Aligned_cols=123  Identities=16%  Similarity=0.106  Sum_probs=90.7

Q ss_pred             eeeeec-CCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC---CCC--eE--EEEeCCCCCceeEEEeC
Q psy950           15 RLALRL-LKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD---GSK--WT--SIVSNGISMPRDLTIDM   86 (407)
Q Consensus        15 ~~~~~~-~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d---G~~--~~--~l~~~~~~~P~glaiD~   86 (407)
                      .++..+ .+...+++...+..|-|||++|....||++|...+ +|+|.++|   |..  +.  +.....-+.|.|+++|.
T Consensus       144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~-~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa  222 (307)
T COG3386         144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN-RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA  222 (307)
T ss_pred             eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC-eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence            345555 35556666666999999999999999999999876 99999998   321  22  22223346899999998


Q ss_pred             CCCeEE-EEeCCCCeEEEEecCCCeEEEEccCCCCceEEEEeC---CEEEEEeCCCC
Q psy950           87 QTHDVY-WVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHK---SDVYWVDRNLR  139 (407)
Q Consensus        87 ~~~~lY-w~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~---~~lYwtd~~~~  139 (407)
                       .+.|| ++-.....|.+.+.+|.....+.-....|..+++-+   +.||.|....+
T Consensus       223 -dG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~  278 (307)
T COG3386         223 -DGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSG  278 (307)
T ss_pred             -CCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCC
Confidence             45666 344444599999999988866654457888889877   89999976653

>KOG4659|consensus

Probab=98.12  E-value=8.1e-05  Score=80.47  Aligned_cols=111  Identities=23%  Similarity=0.274  Sum_probs=83.2

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEE------------------EeCCCCCceeEEEeCCCCeEEE
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSI------------------VSNGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l------------------~~~~~~~P~glaiD~~~~~lYw   93 (407)
                      +-.|+|||+|.. |.||++|..   .|...+-+|--.+.+                  +...+.||+.|||||..+-||+
T Consensus       474 L~~PkGIa~dk~-g~lYfaD~t---~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~V  549 (1899)
T KOG4659|consen  474 LIFPKGIAFDKM-GNLYFADGT---RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLV  549 (1899)
T ss_pred             eccCCceeEccC-CcEEEeccc---EEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEE
Confidence            557999999965 999999863   677777665433322                  2223679999999999999999


Q ss_pred             EeCCCCeEEEEecCCCeEEEEc--------------------cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCC
Q psy950           94 VDAKLDLIQKISYNGGNRQIIR--------------------RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus        94 ~d~~~~~I~~~~~dG~~~~~~~--------------------~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~  148 (407)
                      .|.  +.|.+++.++.-+.+..                    ..+..|.+|++-. +.||.++....+|-|+.+-+
T Consensus       550 ld~--nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~  623 (1899)
T KOG4659|consen  550 LDT--NVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLS  623 (1899)
T ss_pred             eec--ceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEec
Confidence            995  78888887776552221                    1244568999866 99999999988888887765

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.01  E-value=0.00018  Score=71.39  Aligned_cols=130  Identities=18%  Similarity=0.172  Sum_probs=92.5

Q ss_pred             EEEEEeeeeecCCcc-eEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEE-eCCCC-----CeEEEEeC-C------
Q psy950           10 LIWAIRLALRLLKKK-KKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKS-YLDGS-----KWTSIVSN-G------   75 (407)
Q Consensus        10 ~~~s~~~~~~~~~~~-~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~-~~dG~-----~~~~l~~~-~------   75 (407)
                      .|+...-..-+|... ..++..++..|.||++++. | ||.++.   ++|.|. +.+|.     .+++|+.. .      
T Consensus        48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~-G-lyV~~~---~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~  122 (367)
T TIGR02604        48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG-G-VYVATP---PDILFLRDKDGDDKADGEREVLLSGFGGQINNH  122 (367)
T ss_pred             EEEEEEcCCCCCCcceeEEeecCCCCccceeEecC-C-EEEeCC---CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcc
Confidence            344443333455543 4567778999999999876 5 999863   478877 55542     45556542 1      


Q ss_pred             CCCceeEEEeCCCCeEEEEeCCC-------------------CeEEEEecCCCeEEEEccCCCCceEEEEeC-CEEEEEe
Q psy950           76 ISMPRDLTIDMQTHDVYWVDAKL-------------------DLIQKISYNGGNRQIIRRNLPNPMGIAVHK-SDVYWVD  135 (407)
Q Consensus        76 ~~~P~glaiD~~~~~lYw~d~~~-------------------~~I~~~~~dG~~~~~~~~~~~~P~~lav~~-~~lYwtd  135 (407)
                      ...|++|++++ .++||+++...                   +.|.+++.+|+..+++...+.+|.||++++ +.+|.+|
T Consensus       123 ~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       123 HHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             cccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence            23488999999 56999988721                   579999999999988888899999999976 8899998


Q ss_pred             CCCCeEEEEe
Q psy950          136 RNLRTVYKAS  145 (407)
Q Consensus       136 ~~~~~I~~~~  145 (407)
                      -......+++
T Consensus       202 n~~~~~~~i~  211 (367)
T TIGR02604       202 NDDPPLCRVT  211 (367)
T ss_pred             cCCCceeEEc
Confidence            7555444443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.94  E-value=6.5e-05  Score=58.30  Aligned_cols=72  Identities=13%  Similarity=0.122  Sum_probs=58.4

Q ss_pred             eEEEeCCCCEEEEEEcCC----------------CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCe
Q psy950           37 TSPFSPLPRLLYWIDYGQ----------------YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL  100 (407)
Q Consensus        37 ~iavdp~~g~lywtd~~~----------------~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~  100 (407)
                      +|+|++..|.+||||...                .+++.+.+......++|.. ++..|+|+++.+.+..|++++....+
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-GLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-EESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-CCCccCeEEEcCCCCEEEEEeccCce
Confidence            689999999999999632                3589999998887777776 79999999999999999999999999


Q ss_pred             EEEEecCCC
Q psy950          101 IQKISYNGG  109 (407)
Q Consensus       101 I~~~~~dG~  109 (407)
                      |.+.-+.|.
T Consensus        81 i~rywl~Gp   89 (89)
T PF03088_consen   81 ILRYWLKGP   89 (89)
T ss_dssp             EEEEESSST
T ss_pred             EEEEEEeCC
Confidence            999988873

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.89  E-value=0.00039  Score=66.97  Aligned_cols=114  Identities=16%  Similarity=0.247  Sum_probs=85.3

Q ss_pred             CCcceEEEeCCCCEEEEEEcC-----C-----CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEE
Q psy950           33 SANTTSPFSPLPRLLYWIDYG-----Q-----YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQ  102 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~-----~-----~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  102 (407)
                      .+|-...+||. |.+|+++.+     .     .+.++|.+-+|...+ ++...+..|+||++++.++.+|++|+..++|.
T Consensus       111 ~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~-l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~  188 (307)
T COG3386         111 NRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR-LLDDDLTIPNGLAFSPDGKTLYVADTPANRIH  188 (307)
T ss_pred             CCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEE-eecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence            45789999999 889999887     2     347899988655444 45445889999999999999999999999999


Q ss_pred             EEecC---CC--e-E-EEEc-cCCCCceEEEEeCCEEEE--EeCCCCeEEEEecCC
Q psy950          103 KISYN---GG--N-R-QIIR-RNLPNPMGIAVHKSDVYW--VDRNLRTVYKASKLA  148 (407)
Q Consensus       103 ~~~~d---G~--~-~-~~~~-~~~~~P~~lav~~~~lYw--td~~~~~I~~~~~~~  148 (407)
                      +.+++   |.  + + .+.. ..-..|=|++++.+-.||  +-|....|.+.+.++
T Consensus       189 r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG  244 (307)
T COG3386         189 RYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDG  244 (307)
T ss_pred             EEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCC
Confidence            99997   32  1 1 1222 345789999999855555  344444788777774

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.87  E-value=0.0038  Score=61.04  Aligned_cols=244  Identities=15%  Similarity=0.161  Sum_probs=130.7

Q ss_pred             CCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc-------cCCCCceEEEEeC-----CEEEEEeCCC-----
Q psy950           76 ISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR-------RNLPNPMGIAVHK-----SDVYWVDRNL-----  138 (407)
Q Consensus        76 ~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-------~~~~~P~~lav~~-----~~lYwtd~~~-----  138 (407)
                      |..|.+|++.+. ++||+++. .++|..++.+|.....+.       .....+.||+++.     ++||..-...     
T Consensus         1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG   78 (331)
T ss_dssp             ESSEEEEEEETT-SCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred             CCCceEEEEeCC-CcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence            357999999996 89999998 999999998887622221       3456779999988     6777654421     


Q ss_pred             ---CeEEEEecCCC-CCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEec
Q psy950          139 ---RTVYKASKLAS-TNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDC  214 (407)
Q Consensus       139 ---~~I~~~~~~~~-g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C  214 (407)
                         .+|.|...... ......+++.          ..-+..      ..+.  .+++ . |-+.                
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~----------~~~p~~------~~~~--H~g~-~-l~fg----------------  122 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLV----------TGLPDT------SSGN--HNGG-G-LAFG----------------  122 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEE----------EEEES-------CSSS--S-EE-E-EEE-----------------
T ss_pred             CcceeeEEEeccCCccccccceEEE----------EEeCCC------CCCC--CCCc-c-ccCC----------------
Confidence               24555554430 0000111111          010100      0000  0111 0 1110                


Q ss_pred             CCCccccC--CCC---cccccceeeeeecccceEEeecCCCC-Ce---------eeeEeecCCcceEEEEEEcCCCEEEE
Q psy950          215 ATGTPSAS--DPK---KCTTMDEYLVFSTRTEIRALHLDPTL-TA---------VPFKTVSNLTNVVGVEFDYADDKILF  279 (407)
Q Consensus       215 ~~G~~l~~--d~~---~C~~~~~~Ll~s~~~~I~~i~l~~~~-~~---------~~~~~~~~~~~~~ald~d~~~~~lyw  279 (407)
                      |.|+..-.  +..   .+..+.     .....|.++..+... ..         .......+++++.++++|+..+.||.
T Consensus       123 pDG~LYvs~G~~~~~~~~~~~~-----~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~  197 (331)
T PF07995_consen  123 PDGKLYVSVGDGGNDDNAQDPN-----SLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWA  197 (331)
T ss_dssp             TTSEEEEEEB-TTTGGGGCSTT-----SSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEE
T ss_pred             CCCcEEEEeCCCCCcccccccc-----cccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEE
Confidence            11111100  000   011110     113456667665430 00         11223567999999999999999999


Q ss_pred             EEecC--CceEEEEeCCCC---------c---------c-------cc----cCCCCccEEEEe------ccCCeEEEEe
Q psy950          280 TQIRP--WAKIAWIPTTNP---------S---------S-------AS----SNLTNVVGVEFD------YADDKILFTQ  322 (407)
Q Consensus       280 sd~~~--~~~I~~~~~~~~---------~---------~-------~~----~~~~~~~glAvD------wi~~~LYwtd  322 (407)
                      +|...  ...|.++.-.+.         .         .       .+    .-...|.||++=      ...+.+++++
T Consensus       198 ~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~  277 (331)
T PF07995_consen  198 ADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVAD  277 (331)
T ss_dssp             EEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEE
T ss_pred             EccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEec
Confidence            99764  245665532110         0         0       00    111278888875      3466799999


Q ss_pred             CCCCCeEEEEECCCCcc------cccCCC-ceeEEEEcCCCCeEEEEeC
Q psy950          323 IRPWAKIAWIPTTNPSS------ASSNLT-NVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       323 ~~~~~~I~v~~~~~~~r------l~~~l~-~P~~iavdp~~g~lywtd~  364 (407)
                      ... .+|.++.++....      +..... +|++|+++|- |.||.++-
T Consensus       278 ~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD-G~Lyv~~d  324 (331)
T PF07995_consen  278 YGG-GRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD-GALYVSDD  324 (331)
T ss_dssp             TTT-TEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT-SEEEEEE-
T ss_pred             CCC-CEEEEEeeecCCCccceEEccccCCCCceEEEEcCC-CeEEEEEC
Confidence            988 8999999874422      345565 9999999995 99999975

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=97.74  E-value=2.1e-05  Score=45.03  Aligned_cols=22  Identities=27%  Similarity=0.838  Sum_probs=19.9

Q ss_pred             ceEEecCCCccccCCCCccccc
Q psy950          209 HYKCDCATGTPSASDPKKCTTM  230 (407)
Q Consensus       209 ~~~C~C~~G~~l~~d~~~C~~~  230 (407)
                      +|+|.|+.||.|.+|+++|.+.
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~DI   22 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCEDI   22 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccccC
Confidence            4899999999999999999854

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.60  E-value=0.021  Score=53.61  Aligned_cols=190  Identities=19%  Similarity=0.243  Sum_probs=126.3

Q ss_pred             CceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEeCCEEE-EEeCCCCeEEEEecCCCCCCccc
Q psy950           78 MPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVHKSDVY-WVDRNLRTVYKASKLASTNITLP  155 (407)
Q Consensus        78 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~~~lY-wtd~~~~~I~~~~~~~~g~~~~~  155 (407)
                      ...+|+.++.++.||-+-.....|.-++.+|.-.+++. ..+..|-+|++-++-.| .+|-+...++....+.     +.
T Consensus        87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~-----~t  161 (316)
T COG3204          87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA-----DT  161 (316)
T ss_pred             cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC-----Cc
Confidence            47799999999999999988889999999998876654 67899999998885444 5555555554444332     00


Q ss_pred             EEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeee
Q psy950          156 TPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLV  235 (407)
Q Consensus       156 ~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll  235 (407)
                      +++..        +     .|                                                           
T Consensus       162 ~~~~~--------~-----~~-----------------------------------------------------------  169 (316)
T COG3204         162 TVISA--------K-----VQ-----------------------------------------------------------  169 (316)
T ss_pred             cEEec--------c-----ce-----------------------------------------------------------
Confidence            11100        0     00                                                           


Q ss_pred             eecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCccc--------c----cCC
Q psy950          236 FSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA--------S----SNL  303 (407)
Q Consensus       236 ~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~--------~----~~~  303 (407)
                              +++|.....        ......|++||+.++++|++-....-.|+.+...-....        .    -+.
T Consensus       170 --------~i~L~~~~k--------~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~  233 (316)
T COG3204         170 --------KIPLGTTNK--------KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL  233 (316)
T ss_pred             --------EEeccccCC--------CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence                    111111100        011235789999999999986643256777664321110        0    134


Q ss_pred             CCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc----------c-cccCCCceeEEEEcCCCCeEEEEe
Q psy950          304 TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS----------S-ASSNLTNVVGVEFDYADDKILFTQ  363 (407)
Q Consensus       304 ~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~----------r-l~~~l~~P~~iavdp~~g~lywtd  363 (407)
                       .+.|+.+|..+++|+.-..++ +.+..++.+|..          . +.++..+|+|||.|. .|.||-+-
T Consensus       234 -DvSgl~~~~~~~~LLVLS~ES-r~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd-~g~lYIvS  301 (316)
T COG3204         234 -DVSGLEFNAITNSLLVLSDES-RRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDD-DGNLYIVS  301 (316)
T ss_pred             -ccccceecCCCCcEEEEecCC-ceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECC-CCCEEEEe
Confidence             678999999999999998887 666666666653          2 456788999999998 57888874

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.55  E-value=0.0016  Score=60.65  Aligned_cols=101  Identities=16%  Similarity=0.192  Sum_probs=65.2

Q ss_pred             cceEEEeCCCCEEEEEEcCCCCeEEEEeC--CCCCeEEEEe-------CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEe
Q psy950           35 NTTSPFSPLPRLLYWIDYGQYPRIGKSYL--DGSKWTSIVS-------NGISMPRDLTIDMQTHDVYWVDAKLDLIQKIS  105 (407)
Q Consensus        35 P~~iavdp~~g~lywtd~~~~~~I~r~~~--dG~~~~~l~~-------~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~  105 (407)
                      -.|||.||.++.||.+--..--+|+....  .+....+...       ..+..|.+|++|+.+++||........|..++
T Consensus       120 ~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d  199 (248)
T PF06977_consen  120 FEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD  199 (248)
T ss_dssp             -EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred             eEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC
Confidence            58999999999999885443226777776  3333332221       13557999999999999999999999999999


Q ss_pred             cCCCeEEEEc---------cCCCCceEEEEeC-CEEEEEe
Q psy950          106 YNGGNRQIIR---------RNLPNPMGIAVHK-SDVYWVD  135 (407)
Q Consensus       106 ~dG~~~~~~~---------~~~~~P~~lav~~-~~lYwtd  135 (407)
                      .+|.-...+.         ..+++|-|||+++ +.||.+.
T Consensus       200 ~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  200 RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            9998765442         2468999999998 8999875

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=97.48  E-value=0.024  Score=54.25  Aligned_cols=88  Identities=16%  Similarity=0.254  Sum_probs=60.7

Q ss_pred             CCCEEEEEEecCCceEEEEeCC----CC--ccc------ccCC---CCccEEEEeccCCeEEEEeCCCCCeEEEEECCCC
Q psy950          273 ADDKILFTQIRPWAKIAWIPTT----NP--SSA------SSNL---TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNP  337 (407)
Q Consensus       273 ~~~~lywsd~~~~~~I~~~~~~----~~--~~~------~~~~---~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~  337 (407)
                      .++.|||.-..+ .+++++...    ..  ...      ..++   ....|+++|. .++||+++-.. +.|.+.+.++.
T Consensus       141 d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~-~aI~~w~~~~~  217 (287)
T PF03022_consen  141 DGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQ-NAIGCWDPDGP  217 (287)
T ss_dssp             TS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCC-TEEEEEETTTS
T ss_pred             CccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCC-CeEEEEeCCCC
Confidence            457899988777 778887642    11  111      1222   2568999999 99999999999 99999999884


Q ss_pred             c-----c-cc---cCCCceeEEEEcC-CCCeEEEEe
Q psy950          338 S-----S-AS---SNLTNVVGVEFDY-ADDKILFTQ  363 (407)
Q Consensus       338 ~-----r-l~---~~l~~P~~iavdp-~~g~lywtd  363 (407)
                      .     . +.   +.+..|-++++++ ..|+||...
T Consensus       218 ~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  218 YTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             B-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             cCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            2     2 33   2489999999998 578998885

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1520|consensus

Probab=97.41  E-value=0.0012  Score=64.03  Aligned_cols=114  Identities=18%  Similarity=0.109  Sum_probs=83.1

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCC----CCCceeEEEeCCCCeEEEEeCCC----CeEEE
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNG----ISMPRDLTIDMQTHDVYWVDAKL----DLIQK  103 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~----~~~P~glaiD~~~~~lYw~d~~~----~~I~~  103 (407)
                      -.+|.||+.+...|.||.+|.--  -+..++.+|.-.+.+..+-    +...++|.||+ ++.|||+|+..    ..+.-
T Consensus       114 CGRPLGl~f~~~ggdL~VaDAYl--GL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~  190 (376)
T KOG1520|consen  114 CGRPLGIRFDKKGGDLYVADAYL--GLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVF  190 (376)
T ss_pred             cCCcceEEeccCCCeEEEEecce--eeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEE
Confidence            36899999999999999999753  6788888877755555432    33578999999 99999999754    11222


Q ss_pred             EecCC-------------CeEEEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCC
Q psy950          104 ISYNG-------------GNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       104 ~~~dG-------------~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~  148 (407)
                      +-+.|             ...++++.++.=|.|+++..  +++.+++....+|.|.-..+
T Consensus       191 a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g  250 (376)
T KOG1520|consen  191 AALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKG  250 (376)
T ss_pred             eeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecC
Confidence            22322             22245668899999999855  78889988887887766654

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.39  E-value=0.00017  Score=47.82  Aligned_cols=39  Identities=26%  Similarity=0.662  Sum_probs=31.9

Q ss_pred             CCCccCCCccccc--ccceecCCCCCCCCcceEEecCCCccccCCCCcc
Q psy950          181 NNPCFRTGNGGCE--QLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC  227 (407)
Q Consensus       181 ~n~C~~~~ng~Cs--~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C  227 (407)
                      .|+|.. ....|.  +.|+++.+       +|.|.|+.||.+..++++|
T Consensus         2 idEC~~-~~~~C~~~~~C~N~~G-------sy~C~C~~Gy~~~~~~~~C   42 (42)
T PF07645_consen    2 IDECAE-GPHNCPENGTCVNTEG-------SYSCSCPPGYELNDDGTTC   42 (42)
T ss_dssp             SSTTTT-TSSSSSTTSEEEEETT-------EEEEEESTTEEECTTSSEE
T ss_pred             ccccCC-CCCcCCCCCEEEcCCC-------CEEeeCCCCcEECCCCCcC
Confidence            477876 556786  89999987       6999999999977777766

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.18  E-value=0.003  Score=49.05  Aligned_cols=69  Identities=19%  Similarity=0.239  Sum_probs=54.3

Q ss_pred             eeEEEeCCCCeEEEEeCC-----------------CCeEEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCCCe
Q psy950           80 RDLTIDMQTHDVYWVDAK-----------------LDLIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRT  140 (407)
Q Consensus        80 ~glaiD~~~~~lYw~d~~-----------------~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~  140 (407)
                      ++|+|+..++.|||+|+.                 .+++.+.+......+++...+..|.||++..  +.|++++....+
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            479999988999999973                 3588998888888889999999999999976  689999999889


Q ss_pred             EEEEecCC
Q psy950          141 VYKASKLA  148 (407)
Q Consensus       141 I~~~~~~~  148 (407)
                      |.|.-..+
T Consensus        81 i~rywl~G   88 (89)
T PF03088_consen   81 ILRYWLKG   88 (89)
T ss_dssp             EEEEESSS
T ss_pred             EEEEEEeC
Confidence            98876553

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.14  E-value=0.3  Score=47.93  Aligned_cols=95  Identities=8%  Similarity=0.057  Sum_probs=63.6

Q ss_pred             EEcCCCEEEEEEecCCceEEEEeCCCCcccc-------cC-----CCCccE---EEEeccCCeEEEEeCCC--------C
Q psy950          270 FDYADDKILFTQIRPWAKIAWIPTTNPSSAS-------SN-----LTNVVG---VEFDYADDKILFTQIRP--------W  326 (407)
Q Consensus       270 ~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~-------~~-----~~~~~g---lAvDwi~~~LYwtd~~~--------~  326 (407)
                      |...+++.+|...+  +.|+.+++.+.....       ..     +-.|.|   +|++.-++.||....+.        .
T Consensus       201 ~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~  278 (352)
T TIGR02658       201 YSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS  278 (352)
T ss_pred             eEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence            34435566666555  468888876543221       11     113444   99999999999964222        1


Q ss_pred             CeEEEEECCCCccccc--CCCceeEEEEcCCCC-eEEEEeCCC
Q psy950          327 AKIAWIPTTNPSSASS--NLTNVVGVEFDYADD-KILFTQIRP  366 (407)
Q Consensus       327 ~~I~v~~~~~~~rl~~--~l~~P~~iavdp~~g-~lywtd~~~  366 (407)
                      ++|.+++.....++..  --..|.+|++.|-.. +||-+++.+
T Consensus       279 ~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s  321 (352)
T TIGR02658       279 RFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD  321 (352)
T ss_pred             CEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC
Confidence            4799999888766432  347999999999999 888888643

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=97.13  E-value=0.23  Score=46.41  Aligned_cols=246  Identities=13%  Similarity=0.096  Sum_probs=152.2

Q ss_pred             CCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE-EEEccCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCc
Q psy950           76 ISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR-QIIRRNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNIT  153 (407)
Q Consensus        76 ~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~  153 (407)
                      -..|..++.++ .+-+.+++...+.|-..|..-... +.-+....+|++|.+.+ +..+.+|... .|.|++..+ .   
T Consensus        61 G~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt-~---  134 (353)
T COG4257          61 GSAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKT-L---  134 (353)
T ss_pred             CCCccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcc-c---
Confidence            34788899988 577899999999999988764444 44457889999999988 6788888776 888888654 1   


Q ss_pred             ccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccccccee
Q psy950          154 LPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY  233 (407)
Q Consensus       154 ~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~  233 (407)
                      ..+..    .-|              ...+     +++-++.                       .++++|+        
T Consensus       135 evt~f----~lp--------------~~~a-----~~nlet~-----------------------vfD~~G~--------  160 (353)
T COG4257         135 EVTRF----PLP--------------LEHA-----DANLETA-----------------------VFDPWGN--------  160 (353)
T ss_pred             ceEEe----ecc--------------cccC-----CCcccce-----------------------eeCCCcc--------
Confidence            11111    111              0000     1111111                       1233333        


Q ss_pred             eeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCC--cccc---cCCCCccE
Q psy950          234 LVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNP--SSAS---SNLTNVVG  308 (407)
Q Consensus       234 Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~--~~~~---~~~~~~~g  308 (407)
                      |-|+.+..+.+ .|++......+.+......+.+|...+ ++.+|++.... +-|.+++-...  ++.+   .+......
T Consensus       161 lWFt~q~G~yG-rLdPa~~~i~vfpaPqG~gpyGi~atp-dGsvwyaslag-naiaridp~~~~aev~p~P~~~~~gsRr  237 (353)
T COG4257         161 LWFTGQIGAYG-RLDPARNVISVFPAPQGGGPYGICATP-DGSVWYASLAG-NAIARIDPFAGHAEVVPQPNALKAGSRR  237 (353)
T ss_pred             EEEeeccccce-ecCcccCceeeeccCCCCCCcceEECC-CCcEEEEeccc-cceEEcccccCCcceecCCCcccccccc
Confidence            55666555554 455543333334455566677776664 45678887777 67888764332  1221   33335667


Q ss_pred             EEEeccCCeEEEEeCCCCCeEEEEECCCCc----ccccCCCceeEEEEcCCCCeEEEEeCCCCCcccccCCCCCCCccee
Q psy950          309 VEFDYADDKILFTQIRPWAKIAWIPTTNPS----SASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVN  384 (407)
Q Consensus       309 lAvDwi~~~LYwtd~~~~~~I~v~~~~~~~----rl~~~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg~~~~~~~~~  384 (407)
                      +-.|.+++ +.-|+++. +++.+++....+    ++-..-.+|.++-||- +|++...||...+    |-+.|+.....+
T Consensus       238 iwsdpig~-~wittwg~-g~l~rfdPs~~sW~eypLPgs~arpys~rVD~-~grVW~sea~aga----i~rfdpeta~ft  310 (353)
T COG4257         238 IWSDPIGR-AWITTWGT-GSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR-HGRVWLSEADAGA----IGRFDPETARFT  310 (353)
T ss_pred             cccCccCc-EEEeccCC-ceeeEeCcccccceeeeCCCCCCCcceeeecc-CCcEEeeccccCc----eeecCcccceEE
Confidence            77888865 66677777 788888776653    2444557999999996 5778777886544    345666666666


Q ss_pred             EEEeCCC
Q psy950          385 TILSRGK  391 (407)
Q Consensus       385 ~l~~~~~  391 (407)
                      ++-.+..
T Consensus       311 v~p~pr~  317 (353)
T COG4257         311 VLPIPRP  317 (353)
T ss_pred             EecCCCC
Confidence            5554443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=97.10  E-value=0.045  Score=55.42  Aligned_cols=147  Identities=12%  Similarity=0.057  Sum_probs=93.4

Q ss_pred             cceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEE------e-CCCCCceeEEEeCC------CC
Q psy950           23 KKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIV------S-NGISMPRDLTIDMQ------TH   89 (407)
Q Consensus        23 ~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~------~-~~~~~P~glaiD~~------~~   89 (407)
                      .+..++..+|+.|++|++.|. |.||.++... .+|.+.+-++...+.+.      . .+..-+.|||+++.      ++
T Consensus        20 f~~~~va~GL~~Pw~maflPD-G~llVtER~~-G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~   97 (454)
T TIGR03606        20 FDKKVLLSGLNKPWALLWGPD-NQLWVTERAT-GKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNP   97 (454)
T ss_pred             cEEEEEECCCCCceEEEEcCC-CeEEEEEecC-CEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCc
Confidence            345567789999999999997 7899998743 48888876554333221      1 13456789999954      56


Q ss_pred             eEEEEeCC---------CCeEEEEecCCC-----eEEEEccCC----CCc-eEEEEeC-CEEEEEeCCC-----------
Q psy950           90 DVYWVDAK---------LDLIQKISYNGG-----NRQIIRRNL----PNP-MGIAVHK-SDVYWVDRNL-----------  138 (407)
Q Consensus        90 ~lYw~d~~---------~~~I~~~~~dG~-----~~~~~~~~~----~~P-~~lav~~-~~lYwtd~~~-----------  138 (407)
                      .||++-+.         ..+|.+..++..     ..+++...+    .|- -.|++.. ++||++-...           
T Consensus        98 ~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~  177 (454)
T TIGR03606        98 YVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLP  177 (454)
T ss_pred             EEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCc
Confidence            89998522         467888888632     123333222    233 3555544 7899974332           


Q ss_pred             ---------------------CeEEEEecCCCC---C----CcccEEcccCCCCceeeEEe
Q psy950          139 ---------------------RTVYKASKLAST---N----ITLPTPIRTGLSGLRDIAIF  171 (407)
Q Consensus       139 ---------------------~~I~~~~~~~~g---~----~~~~~~i~~~~~~p~~i~i~  171 (407)
                                           ++|.|++.+++.   +    ....++...++..|.++++.
T Consensus       178 ~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~d  238 (454)
T TIGR03606       178 NQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFT  238 (454)
T ss_pred             chhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEEC
Confidence                                 268888877521   1    11245667777777777764

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.09  E-value=0.36  Score=47.94  Aligned_cols=317  Identities=13%  Similarity=0.051  Sum_probs=150.4

Q ss_pred             EeeeeecCCcceEEE--cCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeE
Q psy950           14 IRLALRLLKKKKKLK--TSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDV   91 (407)
Q Consensus        14 ~~~~~~~~~~~~~l~--~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~l   91 (407)
                      .++..+|+...+++-  ..+-.-+.++++.|..+++|.++..  +.|...++.-.....-+..+. .|.|+++.+.++.|
T Consensus        16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd--g~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~   92 (369)
T PF02239_consen   16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD--GTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYV   92 (369)
T ss_dssp             TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT--SEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEE
T ss_pred             CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC--CeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEE
Confidence            356777776554432  2222225667888989999999753  589999987655443444443 79999999999999


Q ss_pred             EEEeCCCCeEEEEecCCCeE-EEEc-c----CCCCce--EEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccC
Q psy950           92 YWVDAKLDLIQKISYNGGNR-QIIR-R----NLPNPM--GIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTG  161 (407)
Q Consensus        92 Yw~d~~~~~I~~~~~dG~~~-~~~~-~----~~~~P~--~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~  161 (407)
                      |.++...+.+..+|...... +.+. .    ....+.  +|....  ...+++-...+.|..++... .+....+.+. -
T Consensus        93 ~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d-~~~~~~~~i~-~  170 (369)
T PF02239_consen   93 YVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD-PKNLKVTTIK-V  170 (369)
T ss_dssp             EEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT-SSCEEEEEEE--
T ss_pred             EEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc-ccccceeeec-c
Confidence            99999999999988765443 3332 1    112233  443322  34555667778888887654 1111111111 1


Q ss_pred             CCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcc-cccceeeeeeccc
Q psy950          162 LSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC-TTMDEYLVFSTRT  240 (407)
Q Consensus       162 ~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C-~~~~~~Ll~s~~~  240 (407)
                      -..|.+..+....+.       ... ......++.+.....     .........|..-.+-.... ..+..=.+++...
T Consensus       171 g~~~~D~~~dpdgry-------~~v-a~~~sn~i~viD~~~-----~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~  237 (369)
T PF02239_consen  171 GRFPHDGGFDPDGRY-------FLV-AANGSNKIAVIDTKT-----GKLVALIDTGKKPHPGPGANFPHPGFGPVWATSG  237 (369)
T ss_dssp             -TTEEEEEE-TTSSE-------EEE-EEGGGTEEEEEETTT-----TEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEB
T ss_pred             cccccccccCcccce-------eee-cccccceeEEEeecc-----ceEEEEeeccccccccccccccCCCcceEEeecc
Confidence            133444433321111       000 011122232222111     12233332222111100000 0111111222211


Q ss_pred             -c---eEEeecCCC-----CCeeeeEeecCCcceEEEEEEcCCCEEEEE---EecCCceEEEEeCCCCcccc----cCCC
Q psy950          241 -E---IRALHLDPT-----LTAVPFKTVSNLTNVVGVEFDYADDKILFT---QIRPWAKIAWIPTTNPSSAS----SNLT  304 (407)
Q Consensus       241 -~---I~~i~l~~~-----~~~~~~~~~~~~~~~~ald~d~~~~~lyws---d~~~~~~I~~~~~~~~~~~~----~~~~  304 (407)
                       .   +-.+.-++.     ..-..+..+.....+..+..++...++|..   +... ..|..++........    .-+.
T Consensus       238 ~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~-~~v~viD~~tl~~~~~i~~~~~~  316 (369)
T PF02239_consen  238 LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDA-DTVQVIDKKTLKVVKTITPGPGK  316 (369)
T ss_dssp             SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSH-T-EEEEECCGTEEEE-HHHHHT-
T ss_pred             ccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCC-ceEEEEECcCcceeEEEeccCCC
Confidence             1   111111111     111122233333334667888998988776   2333 679999988765443    1112


Q ss_pred             CccEEEEeccCCeEEEEeCCCCC-eEEEEECCCCccccc-CCCceeEE
Q psy950          305 NVVGVEFDYADDKILFTQIRPWA-KIAWIPTTNPSSASS-NLTNVVGV  350 (407)
Q Consensus       305 ~~~glAvDwi~~~LYwtd~~~~~-~I~v~~~~~~~rl~~-~l~~P~~i  350 (407)
                      .+..+.+..-++.+|.+.+.. + +|.+++......+.+ .+..|.|+
T Consensus       317 ~~~h~ef~~dG~~v~vS~~~~-~~~i~v~D~~Tl~~~~~i~~~tP~G~  363 (369)
T PF02239_consen  317 RVVHMEFNPDGKEVWVSVWDG-NGAIVVYDAKTLKEKKRIPVPTPTGK  363 (369)
T ss_dssp             -EEEEEE-TTSSEEEEEEE---TTEEEEEETTTTEEEEEEE--SEEEE
T ss_pred             cEeccEECCCCCEEEEEEecC-CCEEEEEECCCcEEEEEEEeeCCCeE
Confidence            488999999999999999988 6 899998777653211 27777775

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.07  E-value=0.38  Score=47.79  Aligned_cols=102  Identities=19%  Similarity=0.148  Sum_probs=67.5

Q ss_pred             CEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEccCCCCceEE
Q psy950           45 RLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGI  124 (407)
Q Consensus        45 g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~l  124 (407)
                      ..+|.++.+.. ++...+.+......-+..+..-+.+++..+.++.+|.+.. .+.|..+|+.-....--......|.++
T Consensus         6 ~l~~V~~~~~~-~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G~~~~~i   83 (369)
T PF02239_consen    6 NLFYVVERGSG-SVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVGGNPRGI   83 (369)
T ss_dssp             GEEEEEEGGGT-EEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred             cEEEEEecCCC-EEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecCCCcceE
Confidence            35567787765 7777665544433334433323456788888899999975 689999999765542222456789999


Q ss_pred             EEe--CCEEEEEeCCCCeEEEEecCC
Q psy950          125 AVH--KSDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       125 av~--~~~lYwtd~~~~~I~~~~~~~  148 (407)
                      ++.  +.++|.+.+..+.+...+..+
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~t  109 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAET  109 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT
T ss_pred             EEcCCCCEEEEEecCCCceeEecccc
Confidence            985  479999999888888888664

...

>KOG1520|consensus

Probab=96.93  E-value=0.0055  Score=59.53  Aligned_cols=128  Identities=12%  Similarity=0.146  Sum_probs=85.8

Q ss_pred             ceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--------cCCCCccEEEEeccCCeEEEEeCCCC---------
Q psy950          264 NVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--------SNLTNVVGVEFDYADDKILFTQIRPW---------  326 (407)
Q Consensus       264 ~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--------~~~~~~~glAvDwi~~~LYwtd~~~~---------  326 (407)
                      +|.+|.|+..++.+|++|..- + +..++..|.....        .+. -..++.||. ++.|||||++..         
T Consensus       116 RPLGl~f~~~ggdL~VaDAYl-G-L~~V~p~g~~a~~l~~~~~G~~~k-f~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a  191 (376)
T KOG1520|consen  116 RPLGIRFDKKGGDLYVADAYL-G-LLKVGPEGGLAELLADEAEGKPFK-FLNDLDIDP-EGVVYFTDSSSKYDRRDFVFA  191 (376)
T ss_pred             CcceEEeccCCCeEEEEecce-e-eEEECCCCCcceeccccccCeeee-ecCceeEcC-CCeEEEeccccccchhheEEe
Confidence            467999999999999999887 5 7777776654221        122 567899999 999999999862         


Q ss_pred             -------CeEEEEECCCCc--ccccCCCceeEEEEcCCCCeEEEEeCCCCCcc--cccCCCCCCCcceeEEE-eCCCccc
Q psy950          327 -------AKIAWIPTTNPS--SASSNLTNVVGVEFDYADDKILFTQIRPWAKI--AWIPTTNPSSASVNTIL-SRGKDEK  394 (407)
Q Consensus       327 -------~~I~v~~~~~~~--rl~~~l~~P~~iavdp~~g~lywtd~~~~~~i--a~~dg~~~~~~~~~~l~-~~~~~~~  394 (407)
                             +++...+.....  .+.++|.-|.|+++-|...++-+++.. ..+|  =|+.|.+.-++.+= .. .||--+|
T Consensus       192 ~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~-~~ri~rywi~g~k~gt~EvF-a~~LPG~PDN  269 (376)
T KOG1520|consen  192 ALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT-TARIKRYWIKGPKAGTSEVF-AEGLPGYPDN  269 (376)
T ss_pred             eecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec-cceeeeeEecCCccCchhhH-hhcCCCCCcc
Confidence                   222222222111  156899999999999999999999852 2334  46666665444221 22 4555555


Q ss_pred             eee
Q psy950          395 AKI  397 (407)
Q Consensus       395 ~~~  397 (407)
                      +..
T Consensus       270 IR~  272 (376)
T KOG1520|consen  270 IRR  272 (376)
T ss_pred             eeE
Confidence            543

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.79  E-value=0.003  Score=37.75  Aligned_cols=26  Identities=19%  Similarity=0.419  Sum_probs=23.5

Q ss_pred             CCceeEEEeCCCCeEEEEeCCCCeEEE
Q psy950           77 SMPRDLTIDMQTHDVYWVDAKLDLIQK  103 (407)
Q Consensus        77 ~~P~glaiD~~~~~lYw~d~~~~~I~~  103 (407)
                      ..|.||++| .++.||++|...++|..
T Consensus         2 ~~P~gvav~-~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    2 NYPHGVAVD-SDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             SSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred             cCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence            579999999 68999999999999875

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=96.65  E-value=0.0013  Score=60.52  Aligned_cols=39  Identities=31%  Similarity=0.602  Sum_probs=33.6

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCc
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKK  226 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~  226 (407)
                      ..++|.. .++.|.|.|.+.++       +|.|.|+.||.|.+|+++
T Consensus       186 ~~~~C~~-~~~~c~~~C~~~~g-------~~~c~c~~g~~~~~~~~~  224 (224)
T cd01475         186 VPDLCAT-LSHVCQQVCISTPG-------SYLCACTEGYALLEDNKT  224 (224)
T ss_pred             CchhhcC-CCCCccceEEcCCC-------CEEeECCCCccCCCCCCC
Confidence            5688987 67899999999887       599999999999888764

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.57  E-value=0.67  Score=43.40  Aligned_cols=261  Identities=12%  Similarity=0.119  Sum_probs=141.4

Q ss_pred             CCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC-CCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCC
Q psy950           30 SFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD-GSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNG  108 (407)
Q Consensus        30 ~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d-G~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG  108 (407)
                      ..-..|+.+|.+|. |-+++++.++. .|-+-+-- |+..++-+- .-..|++|.+++. +...++|... .|.+++-.-
T Consensus        59 p~G~ap~dvapapd-G~VWft~qg~g-aiGhLdP~tGev~~ypLg-~Ga~Phgiv~gpd-g~~Witd~~~-aI~R~dpkt  133 (353)
T COG4257          59 PNGSAPFDVAPAPD-GAVWFTAQGTG-AIGHLDPATGEVETYPLG-SGASPHGIVVGPD-GSAWITDTGL-AIGRLDPKT  133 (353)
T ss_pred             CCCCCccccccCCC-CceEEecCccc-cceecCCCCCceEEEecC-CCCCCceEEECCC-CCeeEecCcc-eeEEecCcc
Confidence            34457999999988 88888888764 77776644 333333333 2358999999994 6678889877 888876533


Q ss_pred             CeEEEEccCCCCc----eEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCC
Q psy950          109 GNRQIIRRNLPNP----MGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNP  183 (407)
Q Consensus       109 ~~~~~~~~~~~~P----~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~  183 (407)
                      ...+.+.-...++    ....+++ +.|+||... +.--|.+-..                 ..|+||.   .|+ +   
T Consensus       134 ~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-----------------~~i~vfp---aPq-G---  188 (353)
T COG4257         134 LEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-----------------NVISVFP---APQ-G---  188 (353)
T ss_pred             cceEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCccc-----------------Cceeeec---cCC-C---
Confidence            3333332112222    2223444 788888652 1111222111                 1244552   121 1   


Q ss_pred             ccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeee--cccceEEeecCCCCCeeeeE-e--
Q psy950          184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFS--TRTEIRALHLDPTLTAVPFK-T--  258 (407)
Q Consensus       184 C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s--~~~~I~~i~l~~~~~~~~~~-~--  258 (407)
                            ++-.-+|                .-|.|       .        +.|+  ..+.|-+|..-.. +...++ |  
T Consensus       189 ------~gpyGi~----------------atpdG-------s--------vwyaslagnaiaridp~~~-~aev~p~P~~  230 (353)
T COG4257         189 ------GGPYGIC----------------ATPDG-------S--------VWYASLAGNAIARIDPFAG-HAEVVPQPNA  230 (353)
T ss_pred             ------CCCcceE----------------ECCCC-------c--------EEEEeccccceEEcccccC-CcceecCCCc
Confidence                  1111222                22222       1        3333  3344555432221 111111 1  


Q ss_pred             -ecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcc----cccCCCCccEEEEeccCCeEEEE-eCCCCCeEEEE
Q psy950          259 -VSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS----ASSNLTNVVGVEFDYADDKILFT-QIRPWAKIAWI  332 (407)
Q Consensus       259 -~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~----~~~~~~~~~glAvDwi~~~LYwt-d~~~~~~I~v~  332 (407)
                       ....+.   +--| ..+++..++... ..+++++=....-    +.+.+-+++.|-||--.  ..|. |... +.|.++
T Consensus       231 ~~~gsRr---iwsd-pig~~wittwg~-g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~g--rVW~sea~a-gai~rf  302 (353)
T COG4257         231 LKAGSRR---IWSD-PIGRAWITTWGT-GSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHG--RVWLSEADA-GAIGRF  302 (353)
T ss_pred             ccccccc---cccC-ccCcEEEeccCC-ceeeEeCcccccceeeeCCCCCCCcceeeeccCC--cEEeecccc-Cceeec
Confidence             111111   2223 234555556555 6677765433222    22555589999999543  3555 7777 889888


Q ss_pred             ECCCCc-c-cccCCCceeEEEEcCCCCeEEEEeCCC
Q psy950          333 PTTNPS-S-ASSNLTNVVGVEFDYADDKILFTQIRP  366 (407)
Q Consensus       333 ~~~~~~-r-l~~~l~~P~~iavdp~~g~lywtd~~~  366 (407)
                      +....+ + +-....++..+.+++.-|++..++.+.
T Consensus       303 dpeta~ftv~p~pr~n~gn~ql~gr~ge~W~~e~gv  338 (353)
T COG4257         303 DPETARFTVLPIPRPNSGNIQLDGRPGELWFTEAGV  338 (353)
T ss_pred             CcccceEEEecCCCCCCCceeccCCCCceeecccCc
Confidence            765543 2 334667778999999999999998654

>KOG4499|consensus

Probab=96.39  E-value=0.047  Score=49.68  Aligned_cols=89  Identities=22%  Similarity=0.323  Sum_probs=69.0

Q ss_pred             EEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecC--C---CeEEEEc-------cCCCCceEEEE
Q psy950           59 GKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN--G---GNRQIIR-------RNLPNPMGIAV  126 (407)
Q Consensus        59 ~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~d--G---~~~~~~~-------~~~~~P~~lav  126 (407)
                      .+..+-|-..+.+. ..+.-|+||+-|...+..|++|+....|..-++|  +   ++++++.       .+-..|-|+++
T Consensus       141 Ly~~~~~h~v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I  219 (310)
T KOG4499|consen  141 LYSWLAGHQVELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI  219 (310)
T ss_pred             EEEeccCCCceeee-hhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceE
Confidence            44455554454444 3577899999999999999999999999888865  2   4555543       24557889999


Q ss_pred             eC-CEEEEEeCCCCeEEEEecCC
Q psy950          127 HK-SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       127 ~~-~~lYwtd~~~~~I~~~~~~~  148 (407)
                      +. +.||.+-|..++|++++..+
T Consensus       220 D~eG~L~Va~~ng~~V~~~dp~t  242 (310)
T KOG4499|consen  220 DTEGNLYVATFNGGTVQKVDPTT  242 (310)
T ss_pred             ccCCcEEEEEecCcEEEEECCCC
Confidence            87 89999999999999999887

>PRK05137 tolB translocation protein TolB; Provisional

Probab=96.08  E-value=1.9  Score=43.66  Aligned_cols=219  Identities=12%  Similarity=0.129  Sum_probs=116.7

Q ss_pred             CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC--CCCeEEEEecCCCeEEEEccCCCCceEEEE--eCCE
Q psy950           55 YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA--KLDLIQKISYNGGNRQIIRRNLPNPMGIAV--HKSD  130 (407)
Q Consensus        55 ~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~--~~~~I~~~~~dG~~~~~~~~~~~~P~~lav--~~~~  130 (407)
                      ...|+.++.||.+.+.+.... ......+..+.+++|+++..  +...|...++++..++.+...-....+.++  ++.+
T Consensus       181 ~~~l~~~d~dg~~~~~lt~~~-~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        181 IKRLAIMDQDGANVRYLTDGS-SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             ceEEEEECCCCCCcEEEecCC-CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence            358999999999988776532 24456778888888888753  346899999987766554321112223344  3456


Q ss_pred             EEEEeCCC--CeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCc
Q psy950          131 VYWVDRNL--RTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKL  208 (407)
Q Consensus       131 lYwtd~~~--~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~  208 (407)
                      |+++-...  ..|+..+..+ +.   ...+...               +.....|+.                       
T Consensus       260 la~~~~~~g~~~Iy~~d~~~-~~---~~~Lt~~---------------~~~~~~~~~-----------------------  297 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRS-GT---TTRLTDS---------------PAIDTSPSY-----------------------  297 (435)
T ss_pred             EEEEEecCCCceEEEEECCC-Cc---eEEccCC---------------CCccCceeE-----------------------
Confidence            76654322  2566666554 21   1111100               000001111                       


Q ss_pred             ceEEecCCCccccCCCCcccccceeeeeecc----cceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecC
Q psy950          209 HYKCDCATGTPSASDPKKCTTMDEYLVFSTR----TEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRP  284 (407)
Q Consensus       209 ~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~----~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~  284 (407)
                                  .+|++       .++|+..    ..|..+.+..... ..+.  ..........+.+.+++|+++....
T Consensus       298 ------------spDG~-------~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt--~~~~~~~~~~~SpdG~~ia~~~~~~  355 (435)
T PRK05137        298 ------------SPDGS-------QIVFESDRSGSPQLYVMNADGSNP-RRIS--FGGGRYSTPVWSPRGDLIAFTKQGG  355 (435)
T ss_pred             ------------cCCCC-------EEEEEECCCCCCeEEEEECCCCCe-EEee--cCCCcccCeEECCCCCEEEEEEcCC
Confidence                        11211       1222211    1233343332211 1110  0111223356778889988876433


Q ss_pred             -CceEEEEeCCCCcccc-cCCCCccEEEEeccCCeEEEEeCCCC----CeEEEEECCCCc
Q psy950          285 -WAKIAWIPTTNPSSAS-SNLTNVVGVEFDYADDKILFTQIRPW----AKIAWIPTTNPS  338 (407)
Q Consensus       285 -~~~I~~~~~~~~~~~~-~~~~~~~glAvDwi~~~LYwtd~~~~----~~I~v~~~~~~~  338 (407)
                       ...|..+++++..... ..+...+.+++.+-++.||++-....    ..|.++++++..
T Consensus       356 ~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        356 GQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             CceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence             1468888877654332 11225678888888999999754321    258888888764

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=96.08  E-value=0.093  Score=50.19  Aligned_cols=99  Identities=19%  Similarity=0.271  Sum_probs=68.9

Q ss_pred             cceEEEeC---CCCEEEEEEcCCCCeEEEEeCC----CCC---------eEEEEeCCCCCceeEEEeCCCCeEEEEeCCC
Q psy950           35 NTTSPFSP---LPRLLYWIDYGQYPRIGKSYLD----GSK---------WTSIVSNGISMPRDLTIDMQTHDVYWVDAKL   98 (407)
Q Consensus        35 P~~iavdp---~~g~lywtd~~~~~~I~r~~~d----G~~---------~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~   98 (407)
                      ..|||+.|   ..++|||.-.... +++++...    .+.         .+.+-..+ ....|+++|. ++.||+++...
T Consensus       130 ~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~-~~s~g~~~D~-~G~ly~~~~~~  206 (287)
T PF03022_consen  130 IFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKG-SQSDGMAIDP-NGNLYFTDVEQ  206 (287)
T ss_dssp             EEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEEEEET-TTEEEEEECCC
T ss_pred             ccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccC-CCCceEEECC-CCcEEEecCCC
Confidence            57888877   4469999987654 78888752    221         23333322 3567999999 89999999999


Q ss_pred             CeEEEEecCC----CeEEEEc--c-CCCCceEEEEeC---CEEEEEeC
Q psy950           99 DLIQKISYNG----GNRQIIR--R-NLPNPMGIAVHK---SDVYWVDR  136 (407)
Q Consensus        99 ~~I~~~~~dG----~~~~~~~--~-~~~~P~~lav~~---~~lYwtd~  136 (407)
                      +.|.+.+.++    .+.+++.  . .+..|-++++.+   +.||+..-
T Consensus       207 ~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  207 NAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             TEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred             CeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence            9999999998    4555555  3 488999999988   89998853

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG4499|consensus

Probab=96.02  E-value=0.21  Score=45.61  Aligned_cols=111  Identities=17%  Similarity=0.167  Sum_probs=80.0

Q ss_pred             CcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC-----CCCeEEEEeC------CCCCceeEEEeCCCCe
Q psy950           22 KKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD-----GSKWTSIVSN------GISMPRDLTIDMQTHD   90 (407)
Q Consensus        22 ~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d-----G~~~~~l~~~------~~~~P~glaiD~~~~~   90 (407)
                      +++-.++...+.-|-||+-|....++|++|.-+. .|...+.|     -++|.+|+..      +--.|.|++||- .+.
T Consensus       147 ~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~-~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~  224 (310)
T KOG4499|consen  147 GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNY-EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGN  224 (310)
T ss_pred             CCCceeeehhccCCccccccccCcEEEEEccCce-EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCc
Confidence            4566677888888999999999999999998765 77555533     3567877742      223699999998 799


Q ss_pred             EEEEeCCCCeEEEEecCCCeE-EEEccCCCCceEEEEeC---CEEEEE
Q psy950           91 VYWVDAKLDLIQKISYNGGNR-QIIRRNLPNPMGIAVHK---SDVYWV  134 (407)
Q Consensus        91 lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~P~~lav~~---~~lYwt  134 (407)
                      ||++-...++|..++..-..+ ..+.-...+....++-+   +.+|.|
T Consensus       225 L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  225 LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence            999999999999999865444 44332233334444443   567776

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=95.98  E-value=0.018  Score=34.36  Aligned_cols=27  Identities=15%  Similarity=0.082  Sum_probs=22.3

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEE
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGK   60 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r   60 (407)
                      +..|.|||+| ..|.||.+|.+.+ +|.+
T Consensus         1 f~~P~gvav~-~~g~i~VaD~~n~-rV~v   27 (28)
T PF01436_consen    1 FNYPHGVAVD-SDGNIYVADSGNH-RVQV   27 (28)
T ss_dssp             BSSEEEEEEE-TTSEEEEEECCCT-EEEE
T ss_pred             CcCCcEEEEe-CCCCEEEEECCCC-EEEE
Confidence            3579999999 6699999998865 7754

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.95  E-value=2.3  Score=43.40  Aligned_cols=104  Identities=9%  Similarity=-0.045  Sum_probs=64.0

Q ss_pred             CCEEEEEEcCC---CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCCeEEEEccCC
Q psy950           44 PRLLYWIDYGQ---YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGGNRQIIRRNL  118 (407)
Q Consensus        44 ~g~lywtd~~~---~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~~~~~~~~~~  118 (407)
                      .+..|.+....   ..+|+.++.||.+.+.+.... ......+..+.+++|+|+...  ...|...++++...+.+...-
T Consensus       183 ~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~-~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~  261 (448)
T PRK04792        183 TRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSP-EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP  261 (448)
T ss_pred             CEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCC-CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC
Confidence            44556655432   247888999999988776532 233467888889999887543  457999999877665543211


Q ss_pred             CCceEEEE--eCCEEEEEeCCCC--eEEEEecCC
Q psy950          119 PNPMGIAV--HKSDVYWVDRNLR--TVYKASKLA  148 (407)
Q Consensus       119 ~~P~~lav--~~~~lYwtd~~~~--~I~~~~~~~  148 (407)
                      ......++  ++.+|+++....+  .|+..+..+
T Consensus       262 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t  295 (448)
T PRK04792        262 GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT  295 (448)
T ss_pred             CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence            12223444  3467877643333  466666554

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.93  E-value=0.97  Score=45.93  Aligned_cols=76  Identities=13%  Similarity=0.231  Sum_probs=52.9

Q ss_pred             EEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc--------cCCCCceEEEEeCC--------EEEEE
Q psy950           71 IVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR--------RNLPNPMGIAVHKS--------DVYWV  134 (407)
Q Consensus        71 l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~--------~~~~~P~~lav~~~--------~lYwt  134 (407)
                      ++.+++..|.+|++.+. ++||+++...++|.+++.++...+.+.        ....-+.||+++.+        +||++
T Consensus        24 ~va~GL~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs  102 (454)
T TIGR03606        24 VLLSGLNKPWALLWGPD-NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS  102 (454)
T ss_pred             EEECCCCCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence            34558999999999984 699999988899999986654432221        13466799999755        48877


Q ss_pred             eCC---------CCeEEEEecC
Q psy950          135 DRN---------LRTVYKASKL  147 (407)
Q Consensus       135 d~~---------~~~I~~~~~~  147 (407)
                      -..         ..+|.|....
T Consensus       103 yt~~~~~~~~~~~~~I~R~~l~  124 (454)
T TIGR03606       103 YTYKNGDKELPNHTKIVRYTYD  124 (454)
T ss_pred             EeccCCCCCccCCcEEEEEEec
Confidence            421         3356666554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.83  E-value=0.12  Score=48.62  Aligned_cols=100  Identities=14%  Similarity=0.173  Sum_probs=74.7

Q ss_pred             cceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEe----C----CCCCceeEEEeCCCCeEEEEeCCCCeEEEEec
Q psy950           35 NTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVS----N----GISMPRDLTIDMQTHDVYWVDAKLDLIQKISY  106 (407)
Q Consensus        35 P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~----~----~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~  106 (407)
                      -.|+|.||..+.+|++--..--.|+...++-+.-..-+.    .    -+....|+..|..++.|++.......+..++.
T Consensus       183 fEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~  262 (316)
T COG3204         183 FEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL  262 (316)
T ss_pred             ceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec
Confidence            379999999999988865543377777754432221111    0    13357899999999999999999999999999


Q ss_pred             CCCeEEEEc---------cCCCCceEEEEeC-CEEEEE
Q psy950          107 NGGNRQIIR---------RNLPNPMGIAVHK-SDVYWV  134 (407)
Q Consensus       107 dG~~~~~~~---------~~~~~P~~lav~~-~~lYwt  134 (407)
                      +|..+..+.         ..+++|-|||.+. +.||.+
T Consensus       263 ~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv  300 (316)
T COG3204         263 SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV  300 (316)
T ss_pred             CCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence            998765442         4688999999987 788876

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=95.69  E-value=0.008  Score=38.23  Aligned_cols=34  Identities=35%  Similarity=0.863  Sum_probs=23.5

Q ss_pred             ccCCCcccccc--cceecCCCCCCCCcceEEecCCCccccCCCCcc
Q psy950          184 CFRTGNGGCEQ--LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC  227 (407)
Q Consensus       184 C~~~~ng~Cs~--lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C  227 (407)
                      |.. ++++|..  .|.++++       +|+|.|..||.  .||..|
T Consensus         1 C~~-~~~~C~~nA~C~~~~~-------~~~C~C~~Gy~--GdG~~C   36 (36)
T PF12947_consen    1 CLE-NNGGCHPNATCTNTGG-------SYTCTCKPGYE--GDGFFC   36 (36)
T ss_dssp             TTT-GGGGS-TTCEEEE-TT-------SEEEEE-CEEE--CCSTCE
T ss_pred             CCC-CCCCCCCCcEeecCCC-------CEEeECCCCCc--cCCcCC
Confidence            344 6778853  8888876       59999999996  677766

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=95.60  E-value=3  Score=42.18  Aligned_cols=226  Identities=14%  Similarity=0.088  Sum_probs=122.9

Q ss_pred             CCEEEEEEc-CC-CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCe-EEEEeCC--CCeEEEEecCCCeEEEEccCC
Q psy950           44 PRLLYWIDY-GQ-YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHD-VYWVDAK--LDLIQKISYNGGNRQIIRRNL  118 (407)
Q Consensus        44 ~g~lywtd~-~~-~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~-lYw~d~~--~~~I~~~~~dG~~~~~~~~~~  118 (407)
                      ++.+|++.. +. ..+|+.++.||.+.+++...+  .-..-...+.+++ +|++...  ...|...++.+..++.+...-
T Consensus       155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~  232 (419)
T PRK04043        155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG--LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ  232 (419)
T ss_pred             eeEEEEEEccCCCcceEEEECCCCCceeEEccCC--CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC
Confidence            578888873 32 459999999999988877643  2234566676775 7765443  567999999877766554211


Q ss_pred             CC--ceEEEEeCCEEEEEeCCC--CeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccc
Q psy950          119 PN--PMGIAVHKSDVYWVDRNL--RTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQ  194 (407)
Q Consensus       119 ~~--P~~lav~~~~lYwtd~~~--~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~  194 (407)
                      ..  ....+-++.+|.++....  ..|+.++..+ +.   .+.+...               +.....|.          
T Consensus       233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~-g~---~~~LT~~---------------~~~d~~p~----------  283 (419)
T PRK04043        233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT-KT---LTQITNY---------------PGIDVNGN----------  283 (419)
T ss_pred             CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC-Cc---EEEcccC---------------CCccCccE----------
Confidence            11  122223445777665432  2455555443 11   1111100               00000111          


Q ss_pred             cceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecc----cceEEeecCCCCCeeeeEeecCCcceEEEEE
Q psy950          195 LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTR----TEIRALHLDPTLTAVPFKTVSNLTNVVGVEF  270 (407)
Q Consensus       195 lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~----~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~  270 (407)
                                               ..+||+       .|+|++.    ..|..+.++........  ..+..+   .++
T Consensus       284 -------------------------~SPDG~-------~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt--~~g~~~---~~~  326 (419)
T PRK04043        284 -------------------------FVEDDK-------RIVFVSDRLGYPNIFMKKLNSGSVEQVV--FHGKNN---SSV  326 (419)
T ss_pred             -------------------------ECCCCC-------EEEEEECCCCCceEEEEECCCCCeEeCc--cCCCcC---ceE
Confidence                                     123332       1223222    25555665543321111  111111   267


Q ss_pred             EcCCCEEEEEEecC-------CceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeCCC-CCeEEEEECCCCc
Q psy950          271 DYADDKILFTQIRP-------WAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIRP-WAKIAWIPTTNPS  338 (407)
Q Consensus       271 d~~~~~lywsd~~~-------~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~~~-~~~I~v~~~~~~~  338 (407)
                      ++.+++|.++....       ...|+.+++++.....  .-+ .-+..++.+-++.|||+.... +..|..++++|..
T Consensus       327 SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~  403 (419)
T PRK04043        327 STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK  403 (419)
T ss_pred             CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence            88888888775432       1368888887765432  212 344577888899999986543 1358899999874

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=95.34  E-value=0.2  Score=49.72  Aligned_cols=123  Identities=11%  Similarity=0.105  Sum_probs=84.3

Q ss_pred             eEEEcCCCCCcceEEEeCCCCEEEEEEcCC---C----------------CeEE-------EEeCCCCCeEEEEeCC---
Q psy950           25 KKLKTSFRSANTTSPFSPLPRLLYWIDYGQ---Y----------------PRIG-------KSYLDGSKWTSIVSNG---   75 (407)
Q Consensus        25 ~~l~~~~~~~P~~iavdp~~g~lywtd~~~---~----------------~~I~-------r~~~dG~~~~~l~~~~---   75 (407)
                      ..+...++.+|.|++.||.+|.||.+|.+.   .                |-++       +...++.-...+....   
T Consensus       231 ~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~  310 (399)
T COG2133         231 SEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTW  310 (399)
T ss_pred             cceEEeccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceee
Confidence            567788899999999999999999999876   1                1111       2222222222222211   


Q ss_pred             --CCCceeEEEeCCC------CeEEEEeCCCCeEEEEecCCCeEEEE---cc--CCCCceEEEEeC-CEEEEEeCC-CCe
Q psy950           76 --ISMPRDLTIDMQT------HDVYWVDAKLDLIQKISYNGGNRQII---RR--NLPNPMGIAVHK-SDVYWVDRN-LRT  140 (407)
Q Consensus        76 --~~~P~glaiD~~~------~~lYw~d~~~~~I~~~~~dG~~~~~~---~~--~~~~P~~lav~~-~~lYwtd~~-~~~  140 (407)
                        ...|.||++=.-+      +.||+.....-.+.+.+.+|....++   +.  ....|.+|++.. +.||.++-. ++.
T Consensus       311 ~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~~g~  390 (399)
T COG2133         311 APHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQGDGR  390 (399)
T ss_pred             ccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCCCCe
Confidence              1246788886432      68999888888888888999844222   22  336999999987 889988876 669


Q ss_pred             EEEEecC
Q psy950          141 VYKASKL  147 (407)
Q Consensus       141 I~~~~~~  147 (407)
                      |.|+...
T Consensus       391 i~Rv~~~  397 (399)
T COG2133         391 ILRVSYA  397 (399)
T ss_pred             EEEecCC
Confidence            9998765

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.30  E-value=0.76  Score=48.13  Aligned_cols=62  Identities=11%  Similarity=0.013  Sum_probs=48.5

Q ss_pred             cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc-----------cc-c-C-CCceeEEEEcCCCCeEEEEeC
Q psy950          301 SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS-----------AS-S-N-LTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       301 ~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r-----------l~-~-~-l~~P~~iavdp~~g~lywtd~  364 (407)
                      .++.+|.||++.+.++.+|.++..+ +++.|+++.....           +. + . -..|...+.|+. |+.|-|=.
T Consensus       318 PVGKsPHGV~vSPDGkylyVanklS-~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~-G~aytslf  393 (635)
T PRK02888        318 PVPKNPHGVNTSPDGKYFIANGKLS-PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGR-GNAYTTLF  393 (635)
T ss_pred             ECCCCccceEECCCCCEEEEeCCCC-CcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCC-CCEEEeEe
Confidence            5667999999999999999999999 8999999876431           22 1 2 368889999886 67776643

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.19  E-value=3.3  Score=40.24  Aligned_cols=264  Identities=10%  Similarity=0.084  Sum_probs=140.3

Q ss_pred             CEEEEEEcC---CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC---------CCeEEEEecCCCeE-
Q psy950           45 RLLYWIDYG---QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK---------LDLIQKISYNGGNR-  111 (407)
Q Consensus        45 g~lywtd~~---~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~---------~~~I~~~~~dG~~~-  111 (407)
                      .++|..|..   ...+++..+-|-....-.+..++ .| .+++.+.++.+|.++..         ++.|+..+...... 
T Consensus         3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~-~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~   80 (342)
T PF06433_consen    3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGF-LG-NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT   80 (342)
T ss_dssp             TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEES-SE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred             cEEEEECCccccccceEEEEECCCCcEEEEeeccc-CC-ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCccc
Confidence            577888763   12366666655444333444333 33 48899999999998853         23466666555443 


Q ss_pred             -EEEc-c-----CCCCc--eEEEEeCCEEEEEeCCCC-eEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCC
Q psy950          112 -QIIR-R-----NLPNP--MGIAVHKSDVYWVDRNLR-TVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDEN  181 (407)
Q Consensus       112 -~~~~-~-----~~~~P--~~lav~~~~lYwtd~~~~-~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~  181 (407)
                       ++.. .     .+.++  ++++.++.++|..+-.-- +|..++...      ..++.                      
T Consensus        81 ~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~------~kvv~----------------------  132 (342)
T PF06433_consen   81 GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAA------KKVVG----------------------  132 (342)
T ss_dssp             EEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTT------TEEEE----------------------
T ss_pred             ceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCC------Cceee----------------------
Confidence             2222 1     12333  344445678887664432 566666554      11111                      


Q ss_pred             CCccCCCcccccccceecCCCCCCCCcceEEecCCCcc----ccCCCCcccccceeeeeecccceEEeecCCCCCeeeeE
Q psy950          182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTP----SASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFK  257 (407)
Q Consensus       182 n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~----l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~  257 (407)
                       +-   ..-||.++- |...      .++.-.|..|-.    |+.+|+.-.         .+   ..+.....+   |+ 
T Consensus       133 -ei---~~PGC~~iy-P~~~------~~F~~lC~DGsl~~v~Ld~~Gk~~~---------~~---t~~F~~~~d---p~-  185 (342)
T PF06433_consen  133 -EI---DTPGCWLIY-PSGN------RGFSMLCGDGSLLTVTLDADGKEAQ---------KS---TKVFDPDDD---PL-  185 (342)
T ss_dssp             -EE---EGTSEEEEE-EEET------TEEEEEETTSCEEEEEETSTSSEEE---------EE---EEESSTTTS----B-
T ss_pred             -ee---cCCCEEEEE-ecCC------CceEEEecCCceEEEEECCCCCEeE---------ee---ccccCCCCc---cc-
Confidence             00   235777764 3332      268889998843    445554110         00   112111111   11 


Q ss_pred             eecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----------------cCCCCccEEEEeccCCeEEEE
Q psy950          258 TVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----------------SNLTNVVGVEFDYADDKILFT  321 (407)
Q Consensus       258 ~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----------------~~~~~~~glAvDwi~~~LYwt  321 (407)
                          +.++   .|...++++||....  +.|+.+++.+.....                .-+ .-.-+|++.-++.||..
T Consensus       186 ----f~~~---~~~~~~~~~~F~Sy~--G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG-G~Q~~A~~~~~~rlyvL  255 (342)
T PF06433_consen  186 ----FEHP---AYSRDGGRLYFVSYE--GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG-GWQLIAYHAASGRLYVL  255 (342)
T ss_dssp             -----S-----EEETTTTEEEEEBTT--SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE--SSS-EEEETTTTEEEEE
T ss_pred             ----cccc---ceECCCCeEEEEecC--CEEEEEeccCCcccccCcccccCccccccCcCCc-ceeeeeeccccCeEEEE
Confidence                0111   345566788886554  468888887764321                122 44569999999999987


Q ss_pred             eCCC-C-------CeEEEEECCCCccc-------------ccCCCceeEEEEcCCCCeEEEEeCCCCCcccccCC
Q psy950          322 QIRP-W-------AKIAWIPTTNPSSA-------------SSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPT  375 (407)
Q Consensus       322 d~~~-~-------~~I~v~~~~~~~rl-------------~~~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg  375 (407)
                      .... +       ..|.++++...+|+             ++.-.+|.=++++...+.||.-|......+..|++
T Consensus       256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            4321 0       35899999888752             23456888888888888888888755443344443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=95.10  E-value=1.3  Score=42.49  Aligned_cols=102  Identities=15%  Similarity=0.125  Sum_probs=68.0

Q ss_pred             CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEccCCCCceEEEEeCCEEEEEeCCCC--------------
Q psy950           74 NGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLR--------------  139 (407)
Q Consensus        74 ~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~~~lYwtd~~~~--------------  139 (407)
                      +++..|++--.-  +++||++|++.+.+..++.+....+.+...-..|.||++.++.+|..-....              
T Consensus       200 ~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l  277 (335)
T TIGR03032       200 SGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERL  277 (335)
T ss_pred             cCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEeccccCCCCcCCCchhhhh
Confidence            477788776665  6999999999999999999844444555555699999999988887644211              


Q ss_pred             -----eEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCC
Q psy950          140 -----TVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPP  178 (407)
Q Consensus       140 -----~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~  178 (407)
                           .|..++..+ |..-..-.+...+...+++.|....++|.
T Consensus       278 ~~~~CGv~vidl~t-G~vv~~l~feg~v~EifdV~vLPg~r~P~  320 (335)
T TIGR03032       278 DALGCGVAVIDLNS-GDVVHWLRFEGVIEEIYDVAVLPGVRRPE  320 (335)
T ss_pred             hhhcccEEEEECCC-CCEEEEEEeCCceeEEEEEEEecCCCCcc
Confidence                 345566555 32111222234456677777776555554

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=94.89  E-value=4.9  Score=40.62  Aligned_cols=104  Identities=13%  Similarity=0.079  Sum_probs=63.4

Q ss_pred             CCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCCeEEEEccCCCCc
Q psy950           44 PRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGGNRQIIRRNLPNP  121 (407)
Q Consensus        44 ~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~~~~~~~~~~~~P  121 (407)
                      ....|.++.+....|+.++.||.+.+.+.... ..-...+..+.+++|+++...  ...|...++++..++.+...-...
T Consensus       164 ~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~-~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~  242 (427)
T PRK02889        164 TRIAYVIKTGNRYQLQISDADGQNAQSALSSP-EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSN  242 (427)
T ss_pred             cEEEEEEccCCccEEEEECCCCCCceEeccCC-CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCc
Confidence            44556554433458999999999977766432 233467888888898887643  356999999877665443211223


Q ss_pred             eEEEEeC--CEEEEEeCCC--CeEEEEecCC
Q psy950          122 MGIAVHK--SDVYWVDRNL--RTVYKASKLA  148 (407)
Q Consensus       122 ~~lav~~--~~lYwtd~~~--~~I~~~~~~~  148 (407)
                      ...++.+  .+|+++-...  ..|+.++..+
T Consensus       243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~  273 (427)
T PRK02889        243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADG  273 (427)
T ss_pred             cceEECCCCCEEEEEEccCCCceEEEEECCC
Confidence            3455543  5677653322  2566666543

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=94.77  E-value=0.1  Score=40.24  Aligned_cols=43  Identities=16%  Similarity=0.268  Sum_probs=34.3

Q ss_pred             CCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEec
Q psy950           63 LDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISY  106 (407)
Q Consensus        63 ~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~  106 (407)
                      .||+..+++. .++..|+||++|+.++.||+++...+.|.....
T Consensus        41 yd~~~~~~va-~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   41 YDGKEVKVVA-SGFSFANGIAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             EeCCEeEEee-ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence            3455554444 478899999999999999999999998887654

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=94.73  E-value=0.039  Score=35.17  Aligned_cols=34  Identities=29%  Similarity=0.916  Sum_probs=24.0

Q ss_pred             CCccCCCcccccc--cceecCCCCCCCCcceEEecCCCccccCCCCcc
Q psy950          182 NPCFRTGNGGCEQ--LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC  227 (407)
Q Consensus       182 n~C~~~~ng~Cs~--lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C  227 (407)
                      ++|.. . ..|.+  .|++.++       +|.|.|+.||.   +++.|
T Consensus         3 ~~C~~-~-~~C~~~~~C~~~~g-------~~~C~C~~g~~---~g~~C   38 (39)
T smart00179        3 DECAS-G-NPCQNGGTCVNTVG-------SYRCECPPGYT---DGRNC   38 (39)
T ss_pred             ccCcC-C-CCcCCCCEeECCCC-------CeEeECCCCCc---cCCcC
Confidence            45543 1 45655  7888766       59999999986   56666

>PRK03629 tolB translocation protein TolB; Provisional

Probab=94.67  E-value=5.6  Score=40.26  Aligned_cols=104  Identities=10%  Similarity=0.006  Sum_probs=67.1

Q ss_pred             CCEEEEEEcCC---CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC--CCCeEEEEecCCCeEEEEccCC
Q psy950           44 PRLLYWIDYGQ---YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA--KLDLIQKISYNGGNRQIIRRNL  118 (407)
Q Consensus        44 ~g~lywtd~~~---~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~--~~~~I~~~~~dG~~~~~~~~~~  118 (407)
                      ++..|......   ...|+.++.||.+++.+... -......+..+.+++|.++..  +...|...++++...+.+...-
T Consensus       164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~-~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~  242 (429)
T PRK03629        164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP  242 (429)
T ss_pred             CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecC-CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC
Confidence            45566655322   35899999999998887653 234567899999988887643  3457898999877665544222


Q ss_pred             CCceEEEEe--CCEEEEEeCCCC--eEEEEecCC
Q psy950          119 PNPMGIAVH--KSDVYWVDRNLR--TVYKASKLA  148 (407)
Q Consensus       119 ~~P~~lav~--~~~lYwtd~~~~--~I~~~~~~~  148 (407)
                      .+...+++.  +.+|+++....+  .|+..+..+
T Consensus       243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t  276 (429)
T PRK03629        243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS  276 (429)
T ss_pred             CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            223344554  468888754333  466666554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=94.66  E-value=2.6  Score=42.56  Aligned_cols=133  Identities=17%  Similarity=0.105  Sum_probs=84.3

Q ss_pred             EEEeeeeecCCcceEEEcCCCCCcceEEEeCCCCE-EEEEEcC-CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCC
Q psy950           12 WAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRL-LYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTH   89 (407)
Q Consensus        12 ~s~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~-lywtd~~-~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~   89 (407)
                      +.+.+...||...+++..++  .-..-...|..++ +|.+... ..+.|++.++++..++.|.... .....-+..+.++
T Consensus       169 ~~l~~~d~dg~~~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~-g~~~~~~~SPDG~  245 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKGG--LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ-GMLVVSDVSKDGS  245 (419)
T ss_pred             ceEEEECCCCCceeEEccCC--CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC-CcEEeeEECCCCC
Confidence            34555667777766666553  2345667777664 7777665 4689999999887777766421 2223345777788


Q ss_pred             eEEEEeCC--CCeEEEEecCCCeEEEEc-cC--CCCceEEEEeCCEEEEEeCCCC--eEEEEecCC
Q psy950           90 DVYWVDAK--LDLIQKISYNGGNRQIIR-RN--LPNPMGIAVHKSDVYWVDRNLR--TVYKASKLA  148 (407)
Q Consensus        90 ~lYw~d~~--~~~I~~~~~dG~~~~~~~-~~--~~~P~~lav~~~~lYwtd~~~~--~I~~~~~~~  148 (407)
                      +|.++...  ...|..++++|...+.+- ..  ...| ..+-++.+||++....+  .|++.+..+
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p-~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~  310 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNG-NFVEDDKRIVFVSDRLGYPNIFMKKLNS  310 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCcc-EECCCCCEEEEEECCCCCceEEEEECCC
Confidence            88877543  357999999887654443 11  1122 22234578888864433  688888775

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=94.53  E-value=5.9  Score=39.89  Aligned_cols=84  Identities=10%  Similarity=0.052  Sum_probs=59.2

Q ss_pred             CEEEEEEecCCceEEEEeCCCCcccc---cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc-cccc--CCCcee
Q psy950          275 DKILFTQIRPWAKIAWIPTTNPSSAS---SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS-SASS--NLTNVV  348 (407)
Q Consensus       275 ~~lywsd~~~~~~I~~~~~~~~~~~~---~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~-rl~~--~l~~P~  348 (407)
                      +.+...+... ..+-..+.+|.....   +++ .++.|+++..++.+-..+...  .|.++++++.. ++.+  .-....
T Consensus       372 e~~vigt~dg-D~l~iyd~~~~e~kr~e~~lg-~I~av~vs~dGK~~vvaNdr~--el~vididngnv~~idkS~~~lIt  447 (668)
T COG4946         372 EGDVIGTNDG-DKLGIYDKDGGEVKRIEKDLG-NIEAVKVSPDGKKVVVANDRF--ELWVIDIDNGNVRLIDKSEYGLIT  447 (668)
T ss_pred             cceEEeccCC-ceEEEEecCCceEEEeeCCcc-ceEEEEEcCCCcEEEEEcCce--EEEEEEecCCCeeEecccccceeE
Confidence            3433444444 456666776665332   788 999999999999999998887  69999998765 3432  345677


Q ss_pred             EEEEcCCCCeEEEE
Q psy950          349 GVEFDYADDKILFT  362 (407)
Q Consensus       349 ~iavdp~~g~lywt  362 (407)
                      +++++|..+++=++
T Consensus       448 df~~~~nsr~iAYa  461 (668)
T COG4946         448 DFDWHPNSRWIAYA  461 (668)
T ss_pred             EEEEcCCceeEEEe
Confidence            88888887776444

>PRK00178 tolB translocation protein TolB; Provisional

Probab=94.22  E-value=4.3  Score=40.89  Aligned_cols=135  Identities=13%  Similarity=0.108  Sum_probs=83.0

Q ss_pred             EEEeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCe
Q psy950           12 WAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHD   90 (407)
Q Consensus        12 ~s~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~   90 (407)
                      |.+.+...+|...+.+... -......+..|...+|+|+... ..+.|++.++++...+.+.... ......+..+.+++
T Consensus       179 ~~l~~~d~~g~~~~~l~~~-~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~-g~~~~~~~SpDG~~  256 (430)
T PRK00178        179 YTLQRSDYDGARAVTLLQS-REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE-GLNGAPAWSPDGSK  256 (430)
T ss_pred             eEEEEECCCCCCceEEecC-CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-CCcCCeEECCCCCE
Confidence            3444555666655555433 2334777899999999887654 3468999999987776655322 22335778888889


Q ss_pred             EEEEeCC--CCeEEEEecCCCeEEEEccCCCCceEEEE--eCCEEEEEeCCC--CeEEEEecCC
Q psy950           91 VYWVDAK--LDLIQKISYNGGNRQIIRRNLPNPMGIAV--HKSDVYWVDRNL--RTVYKASKLA  148 (407)
Q Consensus        91 lYw~d~~--~~~I~~~~~dG~~~~~~~~~~~~P~~lav--~~~~lYwtd~~~--~~I~~~~~~~  148 (407)
                      |+++-..  ...|..+++++...+.+..........++  ++.+||++....  ..|+..+..+
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~  320 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG  320 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            9876543  34799999988766544322222233344  346777764332  2566666554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=94.17  E-value=4.5  Score=40.96  Aligned_cols=135  Identities=9%  Similarity=0.042  Sum_probs=85.9

Q ss_pred             EEEeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCe
Q psy950           12 WAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHD   90 (407)
Q Consensus        12 ~s~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~   90 (407)
                      +.+.+...+|...+.+.. +-..-.+.+..|...+|.|+... ..+.|+..++++...+.+.... ......+..+.+++
T Consensus       179 ~~l~~~d~dg~~~~~lt~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-~~~~~~~~SPDG~~  256 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGAPAFSPDGSK  256 (429)
T ss_pred             eeEEEEcCCCCCCEEeec-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-CCcCCeEECCCCCE
Confidence            456666777777666644 33345788999998888887543 3468999999987766665421 12345789999999


Q ss_pred             EEEEeCCC--CeEEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCC--CeEEEEecCC
Q psy950           91 VYWVDAKL--DLIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNL--RTVYKASKLA  148 (407)
Q Consensus        91 lYw~d~~~--~~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~--~~I~~~~~~~  148 (407)
                      |+++....  ..|..+++++...+.+..........++.+  .+|+++....  ..|+.++..+
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~  320 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING  320 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence            99985433  469999998776654443222334455543  5565553322  2566666554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=94.06  E-value=7.6  Score=39.29  Aligned_cols=218  Identities=11%  Similarity=0.040  Sum_probs=115.5

Q ss_pred             CeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCCeEEEEccCCCCceEEEEe--CCEE
Q psy950           56 PRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGGNRQIIRRNLPNPMGIAVH--KSDV  131 (407)
Q Consensus        56 ~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~~~~~~~~~~~~P~~lav~--~~~l  131 (407)
                      ..|..++.+|.+.+.|...+ ......+..+.+++|+++...  ...|...++++..++.+...-.....+++.  +.+|
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~-~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSA-EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCCCCCceEeecCC-CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence            36888999999888776532 234567788888899988643  356999999877765544211122344453  4677


Q ss_pred             EEEeCCCC--eEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcc
Q psy950          132 YWVDRNLR--TVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLH  209 (407)
Q Consensus       132 Ywtd~~~~--~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~  209 (407)
                      +++-...+  .|+..+..+ +.   .+.+...               +.....++.                        
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~-g~---~~~lt~~---------------~~~~~~~~~------------------------  299 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGS-RQ---LTRLTNH---------------FGIDTEPTW------------------------  299 (433)
T ss_pred             EEEEeCCCCceEEEEECCC-CC---eEECccC---------------CCCccceEE------------------------
Confidence            76643322  466666554 21   1111100               000001111                        


Q ss_pred             eEEecCCCccccCCCCcccccceeeeeecc----cceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecC-
Q psy950          210 YKCDCATGTPSASDPKKCTTMDEYLVFSTR----TEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRP-  284 (407)
Q Consensus       210 ~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~----~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~-  284 (407)
                                 .+|++       +|+|+..    ..|..+.+..... ..+ .... ......++.+.++.|+++.... 
T Consensus       300 -----------spDG~-------~l~f~sd~~g~~~iy~~dl~~g~~-~~l-t~~g-~~~~~~~~SpDG~~Ia~~~~~~~  358 (433)
T PRK04922        300 -----------APDGK-------SIYFTSDRGGRPQIYRVAASGGSA-ERL-TFQG-NYNARASVSPDGKKIAMVHGSGG  358 (433)
T ss_pred             -----------CCCCC-------EEEEEECCCCCceEEEEECCCCCe-EEe-ecCC-CCccCEEECCCCCEEEEEECCCC
Confidence                       11221       1222211    1233333332211 111 1111 1122467888899999876533 


Q ss_pred             CceEEEEeCCCCcccc-cCCCCccEEEEeccCCeEEEEeCCC-CCeEEEEECCCCc
Q psy950          285 WAKIAWIPTTNPSSAS-SNLTNVVGVEFDYADDKILFTQIRP-WAKIAWIPTTNPS  338 (407)
Q Consensus       285 ~~~I~~~~~~~~~~~~-~~~~~~~glAvDwi~~~LYwtd~~~-~~~I~v~~~~~~~  338 (407)
                      ...|+.+++++..... .-+...+..++.+.++.||++.... ...|..++++|..
T Consensus       359 ~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~  414 (433)
T PRK04922        359 QYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV  414 (433)
T ss_pred             ceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            1368888887654332 1111345667888899999876532 1468888887753

>PRK04792 tolB translocation protein TolB; Provisional

Probab=94.00  E-value=4.3  Score=41.38  Aligned_cols=135  Identities=10%  Similarity=0.026  Sum_probs=83.9

Q ss_pred             EEEeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCe
Q psy950           12 WAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHD   90 (407)
Q Consensus        12 ~s~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~   90 (407)
                      +.+.+...+|...+.+.. .-..-...+..|...+|+|+... ..+.|+..++++...+.+.... ......+..+.+++
T Consensus       198 ~~l~i~d~dG~~~~~l~~-~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~~  275 (448)
T PRK04792        198 YQLMIADYDGYNEQMLLR-SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGKK  275 (448)
T ss_pred             eEEEEEeCCCCCceEeec-CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCCE
Confidence            344445566765555433 22334578889999999998653 3468999999987766655322 12346788898999


Q ss_pred             EEEEeCCC--CeEEEEecCCCeEEEEccCCCCceEEEE--eCCEEEEEeCCC--CeEEEEecCC
Q psy950           91 VYWVDAKL--DLIQKISYNGGNRQIIRRNLPNPMGIAV--HKSDVYWVDRNL--RTVYKASKLA  148 (407)
Q Consensus        91 lYw~d~~~--~~I~~~~~dG~~~~~~~~~~~~P~~lav--~~~~lYwtd~~~--~~I~~~~~~~  148 (407)
                      |+++....  ..|..+++++...+.+..........++  ++.+|+++....  ..|+.++..+
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~  339 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS  339 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            98874433  3699999987766544322222333444  346777765432  2566666654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=94.00  E-value=7.8  Score=39.21  Aligned_cols=117  Identities=13%  Similarity=0.100  Sum_probs=71.7

Q ss_pred             EEEEEcCCCEEEEEEecC-CceEEEEeCCCCcccc---cCCCCccEEEEeccCCeEEEEeCCCC-CeEEEEECCCCc-cc
Q psy950          267 GVEFDYADDKILFTQIRP-WAKIAWIPTTNPSSAS---SNLTNVVGVEFDYADDKILFTQIRPW-AKIAWIPTTNPS-SA  340 (407)
Q Consensus       267 ald~d~~~~~lywsd~~~-~~~I~~~~~~~~~~~~---~~~~~~~glAvDwi~~~LYwtd~~~~-~~I~v~~~~~~~-rl  340 (407)
                      ...+.+.+++|+++.... ...|+.+++++.....   .-+ .....++.+.++.|+++..... ..|.++++++.. ++
T Consensus       294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~-~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~  372 (435)
T PRK05137        294 SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG-RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI  372 (435)
T ss_pred             ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC-cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe
Confidence            356778888887764332 2468888888764332   222 4556777788999998865431 368889987654 33


Q ss_pred             ccCCCceeEEEEcCCCCeEEEEeCCC-C---CcccccCCCCCCCcceeEEE
Q psy950          341 SSNLTNVVGVEFDYADDKILFTQIRP-W---AKIAWIPTTNPSSASVNTIL  387 (407)
Q Consensus       341 ~~~l~~P~~iavdp~~g~lywtd~~~-~---~~ia~~dg~~~~~~~~~~l~  387 (407)
                      .+.-.....++..|-...|+|+--.. .   .++   ...+++|.+.+.|.
T Consensus       373 lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L---~~~dl~g~~~~~l~  420 (435)
T PRK05137        373 LTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKL---YTVDLTGRNEREVP  420 (435)
T ss_pred             ccCCCCCCCCeECCCCCEEEEEEccCCCCCcceE---EEEECCCCceEEcc
Confidence            33223456778888888888874321 1   233   23355666665444

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.86  E-value=2.2  Score=42.30  Aligned_cols=119  Identities=18%  Similarity=0.160  Sum_probs=72.7

Q ss_pred             cCCCCCcceEEE--eCCCCEEEEEEcCCCCeEEEEeC--CCCC--eEEEEeC-C-CCCceeEEEeCCCCeEEEEeCCCCe
Q psy950           29 TSFRSANTTSPF--SPLPRLLYWIDYGQYPRIGKSYL--DGSK--WTSIVSN-G-ISMPRDLTIDMQTHDVYWVDAKLDL  100 (407)
Q Consensus        29 ~~~~~~P~~iav--dp~~g~lywtd~~~~~~I~r~~~--dG~~--~~~l~~~-~-~~~P~glaiD~~~~~lYw~d~~~~~  100 (407)
                      ...+..|.|+++  ++..|.+|..-.+..+.++...|  +|..  ...++.+ . -..|+|+++|...++||..+.. .-
T Consensus       152 ~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~-~G  230 (381)
T PF02333_consen  152 ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEED-VG  230 (381)
T ss_dssp             E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETT-TE
T ss_pred             ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCc-cE
Confidence            345677999998  56777777654443345655555  3433  3344432 2 2479999999999999999976 47


Q ss_pred             EEEEecC---CCeEEEEc----c-CCCCceEEEEeC-----CEEEEEeCCCCeEEEEecCC
Q psy950          101 IQKISYN---GGNRQIIR----R-NLPNPMGIAVHK-----SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       101 I~~~~~d---G~~~~~~~----~-~~~~P~~lav~~-----~~lYwtd~~~~~I~~~~~~~  148 (407)
                      |++.+.+   +..++.+.    . -....-||+++.     ++|..++...++....+..+
T Consensus       231 IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  231 IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence            8998886   33444442    1 124667999862     57888888777665555553

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>smart00181 EGF Epidermal growth factor-like domain

Probab=93.71  E-value=0.074  Score=33.10  Aligned_cols=24  Identities=33%  Similarity=0.953  Sum_probs=19.1

Q ss_pred             ccccc-cceecCCCCCCCCcceEEecCCCccc
Q psy950          190 GGCEQ-LCFSYPVEFPQNKLHYKCDCATGTPS  220 (407)
Q Consensus       190 g~Cs~-lC~~~~~~~~~~~~~~~C~C~~G~~l  220 (407)
                      ..|.+ .|++..+       +|.|.|+.||.+
T Consensus         6 ~~C~~~~C~~~~~-------~~~C~C~~g~~g   30 (35)
T smart00181        6 GPCSNGTCINTPG-------SYTCSCPPGYTG   30 (35)
T ss_pred             CCCCCCEEECCCC-------CeEeECCCCCcc
Confidence            56666 8998755       699999999974

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=93.68  E-value=8.3  Score=38.42  Aligned_cols=104  Identities=13%  Similarity=0.021  Sum_probs=63.7

Q ss_pred             CCEEEEEEcC--CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCC--CeEEEEecCCCeEEEEccCCC
Q psy950           44 PRLLYWIDYG--QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKL--DLIQKISYNGGNRQIIRRNLP  119 (407)
Q Consensus        44 ~g~lywtd~~--~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~--~~I~~~~~dG~~~~~~~~~~~  119 (407)
                      .+..|....+  ....|..++.||.+.+.+...+ ......+..+.+++|+|+....  ..|...++.+...+.+.....
T Consensus       156 ~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~-~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~  234 (417)
T TIGR02800       156 TRIAYVSKSGKSRRYELQVADYDGANPQTITRSR-EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPG  234 (417)
T ss_pred             CEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCC-CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC
Confidence            3455555543  2457999999999888877533 1234566888889999987543  578888887665544332222


Q ss_pred             CceEEEEeC--CEEEEEeCCCC--eEEEEecCC
Q psy950          120 NPMGIAVHK--SDVYWVDRNLR--TVYKASKLA  148 (407)
Q Consensus       120 ~P~~lav~~--~~lYwtd~~~~--~I~~~~~~~  148 (407)
                      ...++++..  ..||++....+  .|+..+..+
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~  267 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG  267 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence            334455543  56777643322  466666543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK02888 nitrous-oxide reductase; Validated

Probab=93.32  E-value=2.8  Score=44.09  Aligned_cols=70  Identities=10%  Similarity=-0.046  Sum_probs=54.3

Q ss_pred             CceeEEEeCCCCeEEEEeCCCCeEEEEecCCCe---------EEEEc---cCCCCceEEEEeC-CEEEEEeCCCCeEEEE
Q psy950           78 MPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN---------RQIIR---RNLPNPMGIAVHK-SDVYWVDRNLRTVYKA  144 (407)
Q Consensus        78 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~---------~~~~~---~~~~~P~~lav~~-~~lYwtd~~~~~I~~~  144 (407)
                      .|+|+++.+.++.+|.+....+.+.++++.-..         +.++.   +....|...++++ +..|-|=--...|.+.
T Consensus       322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kw  401 (635)
T PRK02888        322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKW  401 (635)
T ss_pred             CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEE
Confidence            799999999999999999999999999986532         12222   4577999999988 5888776555566666


Q ss_pred             ecC
Q psy950          145 SKL  147 (407)
Q Consensus       145 ~~~  147 (407)
                      +..
T Consensus       402 n~~  404 (635)
T PRK02888        402 NIE  404 (635)
T ss_pred             ehH
Confidence            654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=93.21  E-value=5.8  Score=40.13  Aligned_cols=133  Identities=8%  Similarity=0.053  Sum_probs=81.3

Q ss_pred             EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEE
Q psy950           14 IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVY   92 (407)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lY   92 (407)
                      +.+...+|...+.+... -..-.+.+..|...+|+++... ..+.|++.++++..++.+.... ......++.+.+++|+
T Consensus       186 l~i~D~~g~~~~~lt~~-~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-g~~~~~~~SpDG~~l~  263 (433)
T PRK04922        186 LQVADSDGYNPQTILRS-AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR-GINGAPSFSPDGRRLA  263 (433)
T ss_pred             EEEECCCCCCceEeecC-CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-CCccCceECCCCCEEE
Confidence            44444455544444432 2234567888998899998754 3468999999887776655322 2234678889889998


Q ss_pred             EEeCC--CCeEEEEecCCCeEEEEccCCCCceEEEEe--CCEEEEEeCCC--CeEEEEecCC
Q psy950           93 WVDAK--LDLIQKISYNGGNRQIIRRNLPNPMGIAVH--KSDVYWVDRNL--RTVYKASKLA  148 (407)
Q Consensus        93 w~d~~--~~~I~~~~~dG~~~~~~~~~~~~P~~lav~--~~~lYwtd~~~--~~I~~~~~~~  148 (407)
                      ++-..  ...|..+++++...+.+..........++.  +.+|+++.-..  ..|+.++..+
T Consensus       264 ~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~  325 (433)
T PRK04922        264 LTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG  325 (433)
T ss_pred             EEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            76433  347999999877665443222222344554  45677664332  2577776554

>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet

Probab=92.87  E-value=0.074  Score=32.85  Aligned_cols=27  Identities=19%  Similarity=0.327  Sum_probs=20.7

Q ss_pred             cccccccceecCCCCCCCCcceEEecCCCccccCC
Q psy950          189 NGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASD  223 (407)
Q Consensus       189 ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d  223 (407)
                      ...|...|-+...        ..|.||.||.|+.+
T Consensus         5 ~t~CpA~CDpn~~--------~~C~CPeGyIlde~   31 (34)
T PF09064_consen    5 QTECPADCDPNSP--------GQCFCPEGYILDEG   31 (34)
T ss_pred             cccCCCccCCCCC--------CceeCCCceEecCC
Confidence            3678888877543        58999999998654

Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.75  E-value=0.58  Score=30.11  Aligned_cols=40  Identities=15%  Similarity=0.156  Sum_probs=30.2

Q ss_pred             CCCeEEEEeCCCCeEEEEecCCCeEEEEccCCCCceEEEE
Q psy950           87 QTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAV  126 (407)
Q Consensus        87 ~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav  126 (407)
                      .+++||.++...+.|..++........-.....+|.+|++
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            4789999999999999999854443222344688999886

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PRK01742 tolB translocation protein TolB; Provisional

Probab=92.73  E-value=10  Score=38.35  Aligned_cols=134  Identities=12%  Similarity=0.085  Sum_probs=81.4

Q ss_pred             EEEeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCe
Q psy950           12 WAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHD   90 (407)
Q Consensus        12 ~s~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~   90 (407)
                      +.+.+...+|.....+ +..-..-.+.+..|...+|.|+..+ ..+.|+..++++..++.+.... ..-..++..+.+++
T Consensus       184 ~~i~i~d~dg~~~~~l-t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~~  261 (429)
T PRK01742        184 YEVRVADYDGFNQFIV-NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGSR  261 (429)
T ss_pred             EEEEEECCCCCCceEe-ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-CccCceeECCCCCE
Confidence            4555666677765544 3333345788999999999988654 3468999999877666554321 12335788888889


Q ss_pred             EEEEeCCC--CeEEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCCC--eEEEEecC
Q psy950           91 VYWVDAKL--DLIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLR--TVYKASKL  147 (407)
Q Consensus        91 lYw~d~~~--~~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~--~I~~~~~~  147 (407)
                      |+++-...  -.|+.+++++...+.+..........++..  .+|+++....+  .|+..+..
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~  324 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS  324 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence            98875333  357888888776654432222233444433  45666543222  45554443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=91.36  E-value=18  Score=36.65  Aligned_cols=113  Identities=12%  Similarity=0.076  Sum_probs=73.2

Q ss_pred             cceEEEeCCCCEEEEEEc-CCCCeEEEEeCCCCC--eEEEEeCCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCC
Q psy950           35 NTTSPFSPLPRLLYWIDY-GQYPRIGKSYLDGSK--WTSIVSNGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGG  109 (407)
Q Consensus        35 P~~iavdp~~g~lywtd~-~~~~~I~r~~~dG~~--~~~l~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~  109 (407)
                      ....++.|...+|+++.. +..+.|++.++++..  .+.+.. ........+..+.+++|+++...  ...|...++++.
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g  361 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG  361 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            356689999888888753 344689999987533  333332 22344567788889999887643  357999999888


Q ss_pred             eEEEEccCCCCceEEEEe--CCEEEEEeCC--CCeEEEEecCC
Q psy950          110 NRQIIRRNLPNPMGIAVH--KSDVYWVDRN--LRTVYKASKLA  148 (407)
Q Consensus       110 ~~~~~~~~~~~P~~lav~--~~~lYwtd~~--~~~I~~~~~~~  148 (407)
                      ..+.+..........++.  +..||++...  ...|+.++..+
T Consensus       362 ~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~  404 (428)
T PRK01029        362 RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT  404 (428)
T ss_pred             CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            776654332233455554  4677776443  23677888775

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.33  E-value=6.6  Score=37.57  Aligned_cols=108  Identities=18%  Similarity=0.186  Sum_probs=73.2

Q ss_pred             ceEEEeCC--CCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCC--------CCceeEEEeCCCCeEEEEeC---------
Q psy950           36 TTSPFSPL--PRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGI--------SMPRDLTIDMQTHDVYWVDA---------   96 (407)
Q Consensus        36 ~~iavdp~--~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~--------~~P~glaiD~~~~~lYw~d~---------   96 (407)
                      +|+|+-..  ..+||-+|..+ .+|..-+  ++-+.+-+....        ..|-+|  --.+++||++-+         
T Consensus       141 kGLAi~~~~~~~~LYaadF~~-g~IDVFd--~~f~~~~~~g~F~DP~iPagyAPFnI--qnig~~lyVtYA~qd~~~~d~  215 (336)
T TIGR03118       141 KGLAVGPTGGGDYLYAANFRQ-GRIDVFK--GSFRPPPLPGSFIDPALPAGYAPFNV--QNLGGTLYVTYAQQDADRNDE  215 (336)
T ss_pred             eeeEEeecCCCceEEEeccCC-CceEEec--CccccccCCCCccCCCCCCCCCCcce--EEECCeEEEEEEecCCccccc
Confidence            56666544  68999999975 4888763  333322221111        134444  445799999854         


Q ss_pred             ----CCCeEEEEecCCCeEEEEc--cCCCCceEEEEe-------CCEEEEEeCCCCeEEEEecCC
Q psy950           97 ----KLDLIQKISYNGGNRQIIR--RNLPNPMGIAVH-------KSDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus        97 ----~~~~I~~~~~dG~~~~~~~--~~~~~P~~lav~-------~~~lYwtd~~~~~I~~~~~~~  148 (407)
                          +.+.|.+.+++|.-.+.+.  ..+..|.||++.       .+.|..-.-..++|-..+...
T Consensus       216 v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~s  280 (336)
T TIGR03118       216 VAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQS  280 (336)
T ss_pred             ccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCC
Confidence                3357999999999887765  679999999983       377888888888887766553

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=91.18  E-value=16  Score=36.83  Aligned_cols=130  Identities=8%  Similarity=0.059  Sum_probs=77.8

Q ss_pred             eeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEE
Q psy950           16 LALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWV   94 (407)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~   94 (407)
                      ....+|...+.+... -..-.+.+..|...+|+++... ..+.|+..++++..++.+.... ......+..+.+++|+++
T Consensus       180 ~~D~dG~~~~~l~~~-~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~~la~~  257 (427)
T PRK02889        180 ISDADGQNAQSALSS-PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-GSNSAPAWSPDGRTLAVA  257 (427)
T ss_pred             EECCCCCCceEeccC-CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEE
Confidence            344455554554432 2223577889998899887653 3468999999977766654322 234567888888899876


Q ss_pred             eC--CCCeEEEEecCCCeEEEEccCCCCceEEEE--eCCEEEEEeCC--CCeEEEEecC
Q psy950           95 DA--KLDLIQKISYNGGNRQIIRRNLPNPMGIAV--HKSDVYWVDRN--LRTVYKASKL  147 (407)
Q Consensus        95 d~--~~~~I~~~~~dG~~~~~~~~~~~~P~~lav--~~~~lYwtd~~--~~~I~~~~~~  147 (407)
                      -.  +...|..++++|...+.+..........++  ++.+|+++...  ...|+..+..
T Consensus       258 ~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~  316 (427)
T PRK02889        258 LSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS  316 (427)
T ss_pred             EccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC
Confidence            33  345688999887765544322122223344  34567665322  2245555544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.54  E-value=0.8  Score=29.40  Aligned_cols=39  Identities=15%  Similarity=0.119  Sum_probs=29.6

Q ss_pred             CCCEEEEEEecCCceEEEEeCCCCcccc--cCCCCccEEEEe
Q psy950          273 ADDKILFTQIRPWAKIAWIPTTNPSSAS--SNLTNVVGVEFD  312 (407)
Q Consensus       273 ~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~~~~~glAvD  312 (407)
                      .+++||.++... +.|..++..+.....  .++..|.+|+++
T Consensus         2 d~~~lyv~~~~~-~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         2 DGTKLYVTNSGS-NTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCEEEEEeCCC-CEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            468899999888 889988886654443  556689999875

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=90.01  E-value=22  Score=35.38  Aligned_cols=113  Identities=14%  Similarity=0.082  Sum_probs=71.3

Q ss_pred             CcceEEEeCCCCEEEEEEc-CCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCCe
Q psy950           34 ANTTSPFSPLPRLLYWIDY-GQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGGN  110 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~-~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~~  110 (407)
                      ...++++.|....||++.. .....|+..++++...+.+.... ......+..+.+++|+++...  ...|..+++++..
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            3567889998888887643 33458999999877665554321 222345667778888887543  3479999998876


Q ss_pred             EEEEccCCCCceEEEEe--CCEEEEEeCCCC--eEEEEecC
Q psy950          111 RQIIRRNLPNPMGIAVH--KSDVYWVDRNLR--TVYKASKL  147 (407)
Q Consensus       111 ~~~~~~~~~~P~~lav~--~~~lYwtd~~~~--~I~~~~~~  147 (407)
                      .+.+.........+++.  +..++++....+  .|..++..
T Consensus       314 ~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       314 VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence            65444333344445554  467888765432  45555544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.83  E-value=8.1  Score=37.57  Aligned_cols=62  Identities=16%  Similarity=0.162  Sum_probs=47.4

Q ss_pred             CcceEEEeCCCCEEEEEEcCC-----CCeEEEEeCCCCCeEEE-EeCCC-------------CCceeEEEeCCCCeEEEE
Q psy950           34 ANTTSPFSPLPRLLYWIDYGQ-----YPRIGKSYLDGSKWTSI-VSNGI-------------SMPRDLTIDMQTHDVYWV   94 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~~~-----~~~I~r~~~dG~~~~~l-~~~~~-------------~~P~glaiD~~~~~lYw~   94 (407)
                      .+.||++ +..|.+||++-+.     .|+|.+.+++|.....+ +...+             .-.+|||+.+.++.||.+
T Consensus        86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            5679999 7779999998775     26999999999986655 22211             136799999998888887


Q ss_pred             eC
Q psy950           95 DA   96 (407)
Q Consensus        95 d~   96 (407)
                      -.
T Consensus       165 ~E  166 (326)
T PF13449_consen  165 ME  166 (326)
T ss_pred             EC
Confidence            54

>PRK00178 tolB translocation protein TolB; Provisional

Probab=88.58  E-value=29  Score=34.88  Aligned_cols=104  Identities=14%  Similarity=0.068  Sum_probs=63.1

Q ss_pred             CCEEEEEEcCC----CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCCeEEEEccC
Q psy950           44 PRLLYWIDYGQ----YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGGNRQIIRRN  117 (407)
Q Consensus        44 ~g~lywtd~~~----~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~~~~~~~~~  117 (407)
                      ++..|.+....    .-+|..++.||.+.+.+...+ ......+..+.+++|+++...  ...|...++++...+.+...
T Consensus       163 ~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~-~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~  241 (430)
T PRK00178        163 TRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSR-EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF  241 (430)
T ss_pred             eeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCC-CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC
Confidence            44556554321    126889999999887776532 234667888889999776533  35799999987766554421


Q ss_pred             CCCceEEEEe--CCEEEEEeCCCC--eEEEEecCC
Q psy950          118 LPNPMGIAVH--KSDVYWVDRNLR--TVYKASKLA  148 (407)
Q Consensus       118 ~~~P~~lav~--~~~lYwtd~~~~--~I~~~~~~~  148 (407)
                      -......++.  +++|+++-...+  .|+..+..+
T Consensus       242 ~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~  276 (430)
T PRK00178        242 EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS  276 (430)
T ss_pred             CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC
Confidence            1222234443  357776643332  566666554

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=88.56  E-value=0.58  Score=29.08  Aligned_cols=20  Identities=25%  Similarity=0.690  Sum_probs=15.7

Q ss_pred             cccceecCCCCCCCCcceEEecCCCcc
Q psy950          193 EQLCFSYPVEFPQNKLHYKCDCATGTP  219 (407)
Q Consensus       193 s~lC~~~~~~~~~~~~~~~C~C~~G~~  219 (407)
                      .+.|.+.++       .|.|.|+.||.
T Consensus        14 ~~~C~~~~~-------~~~C~C~~g~~   33 (38)
T cd00054          14 GGTCVNTVG-------SYRCSCPPGYT   33 (38)
T ss_pred             CCEeECCCC-------CeEeECCCCCc
Confidence            357887665       59999999986

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=88.32  E-value=18  Score=34.74  Aligned_cols=118  Identities=8%  Similarity=-0.045  Sum_probs=70.2

Q ss_pred             ceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC-----CCCeEEEEeC-------CCCCceeEEEeCCCCe-
Q psy950           24 KKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD-----GSKWTSIVSN-------GISMPRDLTIDMQTHD-   90 (407)
Q Consensus        24 ~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d-----G~~~~~l~~~-------~~~~P~glaiD~~~~~-   90 (407)
                      ....+...|.+|+||++.|. +.++.+|.+.. .....+.+     |.....++..       .-..|+|+++...... 
T Consensus        14 ~A~~tDp~L~N~WGia~~p~-~~~WVadngT~-~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~   91 (336)
T TIGR03118        14 AAQIVDPGLRNAWGLSYRPG-GPFWVANTGTG-TATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFV   91 (336)
T ss_pred             cccccCccccccceeEecCC-CCEEEecCCcc-eEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceE
Confidence            34566678999999999996 45555555543 66666666     5554444431       1347999999864432 


Q ss_pred             ------------EEEEeCCCCeEEEEec--CCC---eEEEEc---cCCCCceEEEEe----CCEEEEEeCCCCeEEEEe
Q psy950           91 ------------VYWVDAKLDLIQKISY--NGG---NRQIIR---RNLPNPMGIAVH----KSDVYWVDRNLRTVYKAS  145 (407)
Q Consensus        91 ------------lYw~d~~~~~I~~~~~--dG~---~~~~~~---~~~~~P~~lav~----~~~lYwtd~~~~~I~~~~  145 (407)
                                  ||.++  .++|..-..  +-.   .-.++.   .....-+|||+.    +++||-+|-.+++|...+
T Consensus        92 vt~~g~~~~a~Fif~tE--dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd  168 (336)
T TIGR03118        92 VSGEGITGPSRFLFVTE--DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK  168 (336)
T ss_pred             EcCCCcccceeEEEEeC--CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence                        33333  345544432  112   111222   123445788887    589999998888876654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=87.18  E-value=8.1  Score=38.33  Aligned_cols=76  Identities=14%  Similarity=0.051  Sum_probs=48.2

Q ss_pred             CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC---CCCeEEEEeC---CC-CCceeEEEeCC---CCeEEEEeCCCCeEE
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD---GSKWTSIVSN---GI-SMPRDLTIDMQ---THDVYWVDAKLDLIQ  102 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d---G~~~~~l~~~---~~-~~P~glaiD~~---~~~lYw~d~~~~~I~  102 (407)
                      .+|.|+++|.+.|+||..+.+.  -|++...+   +..++.+...   .+ ...+||+|=+.   .+.|..++-+.++..
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE~~--GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~  285 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEEDV--GIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFA  285 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEETTT--EEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred             CcceEEEEecccCCEEEecCcc--EEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence            4799999999999999999863  89999997   3444444331   12 36788888432   235666666666666


Q ss_pred             EEecCCCe
Q psy950          103 KISYNGGN  110 (407)
Q Consensus       103 ~~~~dG~~  110 (407)
                      +.+..|.+
T Consensus       286 Vy~r~~~~  293 (381)
T PF02333_consen  286 VYDREGPN  293 (381)
T ss_dssp             EEESSTT-
T ss_pred             EEecCCCC
Confidence            66655544

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=86.70  E-value=0.77  Score=27.98  Aligned_cols=19  Identities=32%  Similarity=0.845  Sum_probs=15.4

Q ss_pred             ccceecCCCCCCCCcceEEecCCCcc
Q psy950          194 QLCFSYPVEFPQNKLHYKCDCATGTP  219 (407)
Q Consensus       194 ~lC~~~~~~~~~~~~~~~C~C~~G~~  219 (407)
                      ..|.+.++       .|.|.|+.||.
T Consensus        12 ~~C~~~~~-------~~~C~C~~g~~   30 (36)
T cd00053          12 GTCVNTPG-------SYRCVCPPGYT   30 (36)
T ss_pred             CEEecCCC-------CeEeECCCCCc
Confidence            57777665       59999999997

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=86.62  E-value=23  Score=31.59  Aligned_cols=261  Identities=13%  Similarity=0.090  Sum_probs=131.8

Q ss_pred             CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCe-E
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN-R  111 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~-~  111 (407)
                      ....+++++|...+|+.....  ..|...+++.................+...+.++.|+.+. ..+.|...+++... .
T Consensus        10 ~~i~~~~~~~~~~~l~~~~~~--g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~   86 (289)
T cd00200          10 GGVTCVAFSPDGKLLATGSGD--GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-SDKTIRLWDLETGECV   86 (289)
T ss_pred             CCEEEEEEcCCCCEEEEeecC--cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-CCCeEEEEEcCcccce
Confidence            345789999987777766543  3677777765443333322222334777777665555554 46788888877532 2


Q ss_pred             EEEccCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcc
Q psy950          112 QIIRRNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNG  190 (407)
Q Consensus       112 ~~~~~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng  190 (407)
                      ..+......+..+.+.+ +.++.+....+.|...+... +  .....+             .  .            ..+
T Consensus        87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~--~~~~~~-------------~--~------------~~~  136 (289)
T cd00200          87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-G--KCLTTL-------------R--G------------HTD  136 (289)
T ss_pred             EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-c--EEEEEe-------------c--c------------CCC
Confidence            33333333556666665 34555544444554444332 0  000000             0  0            000


Q ss_pred             cccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec-ccceEEeecCCCCCeeeeEeecCCcceEEEE
Q psy950          191 GCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST-RTEIRALHLDPTLTAVPFKTVSNLTNVVGVE  269 (407)
Q Consensus       191 ~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald  269 (407)
                      ....+++.                |.+              .+++.+. ...+.-..+........+ . .....+.++.
T Consensus       137 ~i~~~~~~----------------~~~--------------~~l~~~~~~~~i~i~d~~~~~~~~~~-~-~~~~~i~~~~  184 (289)
T cd00200         137 WVNSVAFS----------------PDG--------------TFVASSSQDGTIKLWDLRTGKCVATL-T-GHTGEVNSVA  184 (289)
T ss_pred             cEEEEEEc----------------CcC--------------CEEEEEcCCCcEEEEEccccccceeE-e-cCccccceEE
Confidence            11111111                000              1111111 223333333221111111 0 1122466788


Q ss_pred             EEcCCCEEEEEEecCCceEEEEeCCCCcccc---cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc---cccC
Q psy950          270 FDYADDKILFTQIRPWAKIAWIPTTNPSSAS---SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS---ASSN  343 (407)
Q Consensus       270 ~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~---~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r---l~~~  343 (407)
                      +++.++.++.+.. . +.|...++.......   .....+..++++.. +.++.+.... ++|.+.++.....   +...
T Consensus       185 ~~~~~~~l~~~~~-~-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~i~i~~~~~~~~~~~~~~~  260 (289)
T cd00200         185 FSPDGEKLLSSSS-D-GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGSED-GTIRVWDLRTGECVQTLSGH  260 (289)
T ss_pred             ECCCcCEEEEecC-C-CcEEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEEEcCC-CcEEEEEcCCceeEEEcccc
Confidence            8888778777765 4 567777776543332   22226778888876 5555555545 6899988875432   2223


Q ss_pred             CCceeEEEEcCCCCeEEEE
Q psy950          344 LTNVVGVEFDYADDKILFT  362 (407)
Q Consensus       344 l~~P~~iavdp~~g~lywt  362 (407)
                      -..+..++++|...+|+-.
T Consensus       261 ~~~i~~~~~~~~~~~l~~~  279 (289)
T cd00200         261 TNSVTSLAWSPDGKRLASG  279 (289)
T ss_pred             CCcEEEEEECCCCCEEEEe
Confidence            3467788888875555433

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=86.33  E-value=2.3  Score=32.80  Aligned_cols=42  Identities=21%  Similarity=-0.052  Sum_probs=31.9

Q ss_pred             cCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeC
Q psy950           20 LLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYL   63 (407)
Q Consensus        20 ~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~   63 (407)
                      +++. ...+..++..|-||+++|.+++||.++...+ .|.....
T Consensus        42 d~~~-~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~-~I~vy~~   83 (86)
T PF01731_consen   42 DGKE-VKVVASGFSFANGIAISPDKKYLYVASSLAH-SIHVYKR   83 (86)
T ss_pred             eCCE-eEEeeccCCCCceEEEcCCCCEEEEEeccCC-eEEEEEe
Confidence            3443 3456678999999999999999999998764 6665543

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=85.77  E-value=1.8  Score=43.11  Aligned_cols=66  Identities=17%  Similarity=0.085  Sum_probs=49.2

Q ss_pred             CcceEEEeCCCCEEEEEEcCC------------CCeEEEEe--------CCCCCeEEEEeCCCCCceeEEEeCCCCeEEE
Q psy950           34 ANTTSPFSPLPRLLYWIDYGQ------------YPRIGKSY--------LDGSKWTSIVSNGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~~~------------~~~I~r~~--------~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw   93 (407)
                      .-+.|+++|.. +||.+--..            .++|.|.+        .++.+ ..+.+.++..|.||+.++.++.||.
T Consensus       178 ~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~-~~i~s~G~RN~qGl~w~P~tg~Lw~  255 (399)
T COG2133         178 FGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPN-SEIWSYGHRNPQGLAWHPVTGALWT  255 (399)
T ss_pred             CcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCC-cceEEeccCCccceeecCCCCcEEE
Confidence            35889999995 999984322            13444444        44555 3456678999999999999999999


Q ss_pred             EeCCCCeE
Q psy950           94 VDAKLDLI  101 (407)
Q Consensus        94 ~d~~~~~I  101 (407)
                      ++.+.+.+
T Consensus       256 ~e~g~d~~  263 (399)
T COG2133         256 TEHGPDAL  263 (399)
T ss_pred             EecCCCcc
Confidence            99988776

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=85.32  E-value=0.54  Score=22.74  Aligned_cols=9  Identities=33%  Similarity=1.021  Sum_probs=7.0

Q ss_pred             EEecCCCcc
Q psy950          211 KCDCATGTP  219 (407)
Q Consensus       211 ~C~C~~G~~  219 (407)
                      +|.|+.||.
T Consensus         1 ~C~C~~G~~    9 (13)
T PF12661_consen    1 TCQCPPGWT    9 (13)
T ss_dssp             EEEE-TTEE
T ss_pred             CccCcCCCc
Confidence            599999997

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=85.21  E-value=29  Score=35.14  Aligned_cols=108  Identities=9%  Similarity=0.004  Sum_probs=81.9

Q ss_pred             EEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC---CCCeEEE
Q psy950           27 LKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA---KLDLIQK  103 (407)
Q Consensus        27 l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~---~~~~I~~  103 (407)
                      .+..++.+-.+++++|...++-.++..  -.|+..++|-.+.+.+-++.-....++++.+..+.|-.+-.   .+..|..
T Consensus       396 r~e~~lg~I~av~vs~dGK~~vvaNdr--~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikl  473 (668)
T COG4946         396 RIEKDLGNIEAVKVSPDGKKVVVANDR--FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKL  473 (668)
T ss_pred             EeeCCccceEEEEEcCCCcEEEEEcCc--eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEE
Confidence            445678899999999998878877653  48999999988888887777777889999998777665543   3467889


Q ss_pred             EecCCCeEEEEccCCCCceEEEEeC--CEEEEEeC
Q psy950          104 ISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDR  136 (407)
Q Consensus       104 ~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~  136 (407)
                      .+++|..+--+-..-.+-|+-|++.  .+||+...
T Consensus       474 ydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         474 YDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             EecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence            9999987755444455666667765  78998754

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=84.83  E-value=0.81  Score=28.07  Aligned_cols=27  Identities=37%  Similarity=0.958  Sum_probs=18.2

Q ss_pred             CCCccCCCcccccccceecCCCCCCCCcceEEecCCCcc
Q psy950          181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTP  219 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~  219 (407)
                      .+||..  +|.    |+....      .+|.|.|+.||.
T Consensus         3 ~~~C~n--~g~----C~~~~~------~~y~C~C~~G~~   29 (32)
T PF00008_consen    3 SNPCQN--GGT----CIDLPG------GGYTCECPPGYT   29 (32)
T ss_dssp             TTSSTT--TEE----EEEEST------SEEEEEEBTTEE
T ss_pred             CCcCCC--CeE----EEeCCC------CCEEeECCCCCc
Confidence            357753  444    555552      279999999986

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>PRK01742 tolB translocation protein TolB; Provisional

Probab=84.38  E-value=49  Score=33.38  Aligned_cols=103  Identities=10%  Similarity=0.055  Sum_probs=64.0

Q ss_pred             CEEEEEEcCC---CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCCeEEEEccCCC
Q psy950           45 RLLYWIDYGQ---YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGGNRQIIRRNLP  119 (407)
Q Consensus        45 g~lywtd~~~---~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~~~~~~~~~~~  119 (407)
                      +..|.++...   ...|+.++.||.++..+.... ......+..+.+++|+++...  ...|...++.+..++.+...-.
T Consensus       170 ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~-~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g  248 (429)
T PRK01742        170 RIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSS-QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG  248 (429)
T ss_pred             EEEEEEEEcCCCceEEEEEECCCCCCceEeccCC-CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC
Confidence            3446665432   248999999999987766532 245678889989999887543  3579999998766554432112


Q ss_pred             CceEEEEeC--CEEEEEeCCCC--eEEEEecCC
Q psy950          120 NPMGIAVHK--SDVYWVDRNLR--TVYKASKLA  148 (407)
Q Consensus       120 ~P~~lav~~--~~lYwtd~~~~--~I~~~~~~~  148 (407)
                      +-..+++.+  .+|+++....+  .|+.++..+
T Consensus       249 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~  281 (429)
T PRK01742        249 HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG  281 (429)
T ss_pred             ccCceeECCCCCEEEEEEecCCcEEEEEEECCC
Confidence            223455543  57777643333  456666543

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=83.22  E-value=19  Score=37.55  Aligned_cols=64  Identities=19%  Similarity=0.323  Sum_probs=45.6

Q ss_pred             CCCCcceEEEeCCCCEEEEEEcCC------------------CCeEEEEeCCCC-------CeEEEEe------------
Q psy950           31 FRSANTTSPFSPLPRLLYWIDYGQ------------------YPRIGKSYLDGS-------KWTSIVS------------   73 (407)
Q Consensus        31 ~~~~P~~iavdp~~g~lywtd~~~------------------~~~I~r~~~dG~-------~~~~l~~------------   73 (407)
                      .+++|.+|+++|..|.+|++-...                  ..+|.|...++.       .-+.++.            
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            478999999999999999986432                  248999888766       2222222            


Q ss_pred             -----CCCCCceeEEEeCCCCeEEEEe
Q psy950           74 -----NGISMPRDLTIDMQTHDVYWVD   95 (407)
Q Consensus        74 -----~~~~~P~glaiD~~~~~lYw~d   95 (407)
                           ..+..|..|++|+. ++|+.+.
T Consensus       428 ~~~~~~~f~sPDNL~~d~~-G~LwI~e  453 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDPD-GNLWIQE  453 (524)
T ss_pred             CcccCCCcCCCCceEECCC-CCEEEEe
Confidence                 12558999999995 5565554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	407
4dg6_A	616	Crystal Structure Of Domains 1 And 2 Of Lrp6 Length		6e-28
3s94_A	619	Crystal Structure Of Lrp6-E1e2 Length = 619		6e-28
4a0p_A	628	Crystal Structure Of Lrp6p3e3p4e4 Length = 628		1e-24
3s2k_A	629	Structural Basis Of Wnt Signaling Inhibition By Dic		1e-24
3s8v_A	623	Crystal Structure Of Lrp6-Dkk1 Complex Length = 623		1e-24
3sob_B	316	The Structure Of The First Ywtd Beta Propeller Doma		3e-24
3soq_A	318	The Structure Of The First Ywtd Beta Propeller Doma		4e-24
1ijq_A	316	Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma		3e-23
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		1e-22
3p5b_L	400	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		2e-22
3p5c_L	440	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		3e-22
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		7e-22
3v64_C	349	Crystal Structure Of Agrin And Lrp4 Length = 349		1e-20
3v65_B	386	Crystal Structure Of Agrin And Lrp4 Complex Length		2e-20
1npe_A	267	Crystal Structure Of Nidogen/laminin Complex Length		2e-08

>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616

Iteration: 1
 Score =  121 bits (304), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 14/244 (5%)
Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
             P    +YW D+G+ P+I ++ +DGS    I+++ I  P  LT+D +   +YW DAKL+
Sbjct: 126 LDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 185
Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
            I K + +G NRQ +++ +LP+P  + + +  +YW D +  ++   +K     +     I
Sbjct: 186 FIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGL---REI 242
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGT 218
            + +    DI  F    Q P+  NPC    NGGC  LC   PV     K  Y+C C TG 
Sbjct: 243 HSDIFSPMDIHAFSQQRQ-PNATNPC-GIDNGGCSHLCLMSPV-----KPFYQCACPTGV 295
Query: 219 PSASDPKKCT-TMDEYLVFSTRTEIRALHLD-PTLTAVPFKTVSNLTNVVGVEFDYADDK 276
               + K C     E L+ + RT++R + LD P  T +  + + ++ + + +++D  +  
Sbjct: 296 KLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQ-LEDIRHAIAIDYDPVEGY 354
Query: 277 ILFT 280
           I +T
Sbjct: 355 IYWT 358

>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619

Iteration: 1
 Score =  121 bits (304), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 14/244 (5%)
Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
             P    +YW D+G+ P+I ++ +DGS    I+++ I  P  LT+D +   +YW DAKL+
Sbjct: 134 LDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 193
Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
            I K + +G NRQ +++ +LP+P  + + +  +YW D +  ++   +K     +     I
Sbjct: 194 FIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGL---REI 250
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGT 218
            + +    DI  F    Q P+  NPC    NGGC  LC   PV     K  Y+C C TG 
Sbjct: 251 HSDIFSPMDIHAFSQQRQ-PNATNPC-GIDNGGCSHLCLMSPV-----KPFYQCACPTGV 303
Query: 219 PSASDPKKCT-TMDEYLVFSTRTEIRALHLD-PTLTAVPFKTVSNLTNVVGVEFDYADDK 276
               + K C     E L+ + RT++R + LD P  T +  + + ++ + + +++D  +  
Sbjct: 304 KLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQ-LEDIRHAIAIDYDPVEGY 362
Query: 277 ILFT 280
           I +T
Sbjct: 363 IYWT 366

>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 13/244 (5%)
Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
             P    +YW ++G  P+I ++ +DGS+ T++V N +     LTID     +YW D   +
Sbjct: 130 LDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTN 188
Query: 100 LIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
           LI+  +  G NR++I  +LP+P G+  ++  +YW D + R++ +A+K +  N T+   I+
Sbjct: 189 LIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTI---IQ 245
Query: 160 TGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTP 219
             L  + DI +F    Q     N C  + NG C  LC + PV        + C C     
Sbjct: 246 GHLDYVMDILVFHSSRQSG--WNEC-ASSNGHCSHLCLAVPVG------GFVCGCPAHYS 296
Query: 220 SASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILF 279
             +D + C+    +L+FS ++ I  + +D   +      + +L NV  +++D  D ++ +
Sbjct: 297 LNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYW 356
Query: 280 TQIR 283
              R
Sbjct: 357 IDSR 360

>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 13/244 (5%)
Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
             P    +YW ++G  P+I ++ +DGS+ T++V N +     LTID     +YW D   +
Sbjct: 128 LDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTN 186
Query: 100 LIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
           LI+  +  G NR++I  +LP+P G+  ++  +YW D + R++ +A+K +  N T+   I+
Sbjct: 187 LIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTI---IQ 243
Query: 160 TGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTP 219
             L  + DI +F    Q     N C  + NG C  LC + PV        + C C     
Sbjct: 244 GHLDYVMDILVFHSSRQSG--WNEC-ASSNGHCSHLCLAVPVG------GFVCGCPAHYS 294
Query: 220 SASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILF 279
             +D + C+    +L+FS ++ I  + +D   +      + +L NV  +++D  D ++ +
Sbjct: 295 LNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYW 354
Query: 280 TQIR 283
              R
Sbjct: 355 IDSR 358

>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 13/244 (5%)
Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
             P    +YW ++G  P+I ++ +DGS+ T++V N +     LTID     +YW D   +
Sbjct: 135 LDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTN 193
Query: 100 LIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
           LI+  +  G NR++I  +LP+P G+  ++  +YW D + R++ +A+K +  N T+   I+
Sbjct: 194 LIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTI---IQ 250
Query: 160 TGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTP 219
             L  + DI +F    Q     N C  + NG C  LC + PV        + C C     
Sbjct: 251 GHLDYVMDILVFHSSRQSG--WNEC-ASSNGHCSHLCLAVPVG------GFVCGCPAHYS 301
Query: 220 SASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILF 279
             +D + C+    +L+FS ++ I  + +D   +      + +L NV  +++D  D ++ +
Sbjct: 302 LNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYW 361
Query: 280 TQIR 283
              R
Sbjct: 362 IDSR 365

>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 11/201 (5%)
Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
             P    +YW D+G+ P+I ++ +DGS    I+++ I  P  LT+D +   +YW DAKL+
Sbjct: 126 LDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 185
Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
            I K + +G NRQ +++ +LP+P  + + +  +YW D +  ++   +K     +     I
Sbjct: 186 FIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGL---REI 242
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGT 218
            + +    DI  F    Q P+  NPC    NGGC  LC   PV     K  Y+C C TG 
Sbjct: 243 HSDIFSPMDIHAFSQQRQ-PNATNPC-GIDNGGCSHLCLMSPV-----KPFYQCACPTGV 295
Query: 219 PSASDPKKCTTMDEYLVFSTR 239
               + K C      L+   R
Sbjct: 296 KLLENGKTCKDGATELLLLAR 316

>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 11/189 (5%)
Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
             P    +YW D+G+ P+I ++ +DGS    I+++ I  P  LT+D +   +YW DAKL+
Sbjct: 129 LDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 188
Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
            I K + +G NRQ +++ +LP+P  + + +  +YW D +  ++   +K     +     I
Sbjct: 189 FIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGL---REI 245
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGT 218
            + +    DI  F    Q P+  NPC    NGGC  LC   PV     K  Y+C C TG 
Sbjct: 246 HSDIFSPMDIHAFSQQRQ-PNATNPC-GIDNGGCSHLCLMSPV-----KPFYQCACPTGV 298
Query: 219 PSASDPKKC 227
               + K C
Sbjct: 299 KLLENGKTC 307

>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 42  PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
           P+   +YW D+G   +I K  L+G    S+V+  I  P  +T+D+ +  +YWVD+KL  I
Sbjct: 129 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 188
Query: 102 QKISYNGGNRQII---RRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
             I  NGGNR+ I    + L +P  +AV +  V+W D     ++ A++L  +++ L   +
Sbjct: 189 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL---L 245
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRT--GNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
              L    D+ +F  + QP    N C RT   NGGC+ LC   P   P +   + C C  
Sbjct: 246 AENLLSPEDMVLFHNLTQPRGV-NWCERTTLSNGGCQYLCLPAPQINPHSP-KFTCACPD 303
Query: 217 GTPSASDPKKCTT 229
           G   A D + C T
Sbjct: 304 GMLLARDMRSCLT 316

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 104/214 (48%), Gaps = 10/214 (4%)
Query: 42  PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
           P+   +YW D+G   +I K  L+G    S+V+  I  P  +T+D+ +  +YWVD+KL  I
Sbjct: 523 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 582
Query: 102 QKISYNGGNRQII---RRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
             I  NGGNR+ I    + L +P  +AV +  V+W D     ++ A++L  +++ L   +
Sbjct: 583 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL---L 639
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRT--GNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
              L    D+ +F  + QP    N C RT   NGGC+ LC   P   P +   + C C  
Sbjct: 640 AENLLSPEDMVLFHNLTQPRGV-NWCERTTLSNGGCQYLCLPAPQINPHSP-KFTCACPD 697
Query: 217 GTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPT 250
           G   A D + C T  E  V +  T    L +  T
Sbjct: 698 GMLLARDMRSCLTEAEAAVATQETSTVRLKVSST 731

>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 42  PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
           P+   +YW D+G   +I K  L+G    S+V+  I  P  +T+D+ +  +YWVD+KL  I
Sbjct: 211 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270
Query: 102 QKISYNGGNRQII---RRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
             I  NGGNR+ I    + L +P  +AV +  V+W D     ++ A++L  +++ L   +
Sbjct: 271 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL---L 327
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRT--GNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
              L    D+ +F  + QP    N C RT   NGGC+ LC   P   P +   + C C  
Sbjct: 328 AENLLSPEDMVLFHNLTQPRGV-NWCERTTLSNGGCQYLCLPAPQINPHSP-KFTCACPD 385
Query: 217 GTPSASDPKKCTT 229
           G   A D + C T
Sbjct: 386 GMLLARDMRSCLT 398

>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 42  PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
           P+   +YW D+G   +I K  L+G    S+V+  I  P  +T+D+ +  +YWVD+KL  I
Sbjct: 251 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 310
Query: 102 QKISYNGGNRQII---RRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
             I  NGGNR+ I    + L +P  +AV +  V+W D     ++ A++L  +++ L   +
Sbjct: 311 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL---L 367
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRT--GNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
              L    D+ +F  + QP    N C RT   NGGC+ LC   P   P +   + C C  
Sbjct: 368 AENLLSPEDMVLFHNLTQPRGV-NWCERTTLSNGGCQYLCLPAPQINPHSP-KFTCACPD 425
Query: 217 GTPSASDPKKCTT 229
           G   A D + C T
Sbjct: 426 GMLLARDMRSCLT 438

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 10/199 (5%)
Query: 42  PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
           P+   +YW D+G   +I K  L+G    S+V+  I  P  +T+D+ +  +YWVD+KL  I
Sbjct: 505 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564
Query: 102 QKISYNGGNRQII---RRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
             I  NGGNR+ I    + L +P  +AV +  V+W D     ++ A++L  +++ L   +
Sbjct: 565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL---L 621
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRT--GNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
              L    D+ +F  + QP    N C RT   NGGC+ LC   P   P +   + C C  
Sbjct: 622 AENLLSPEDMVLFHQLTQPRGV-NWCERTTLSNGGCQYLCLPAPQINPHSP-KFTCACPD 679
Query: 217 GTPSASDPKKCTTMDEYLV 235
           G   A D + C T  E  V
Sbjct: 680 GMLLARDMRSCLTEAEAAV 698

>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 88/181 (48%), Gaps = 17/181 (9%)
Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
             P+   +YW D+G  PRI  S +DGS    I    +  P  LTID     +YWVDAK  
Sbjct: 166 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 225
Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
           +I++ + +G +R+ +I + LP+P  I V +  +YW D + +++  A+K    N  +   I
Sbjct: 226 VIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEI---I 282
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTG--NGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
           R  L    DI       QP  +N    R G  NGGC  LC       P  + +Y C C T
Sbjct: 283 RNKLHFPMDIHTLHPQRQPAGKN----RCGDNNGGCTHLC------LPSGQ-NYTCACPT 331
Query: 217 G 217
           G
Sbjct: 332 G 332

>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 88/181 (48%), Gaps = 17/181 (9%)
Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
             P+   +YW D+G  PRI  S +DGS    I    +  P  LTID     +YWVDAK  
Sbjct: 209 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 268
Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
           +I++ + +G +R+ +I + LP+P  I V +  +YW D + +++  A+K    N  +   I
Sbjct: 269 VIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEI---I 325
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTG--NGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
           R  L    DI       QP  +N    R G  NGGC  LC       P  + +Y C C T
Sbjct: 326 RNKLHFPMDIHTLHPQRQPAGKN----RCGDNNGGCTHLC------LPSGQ-NYTCACPT 374
Query: 217 G 217
           G
Sbjct: 375 G 375

>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
           F  + +++YW D  + P IG++ L G + T+I+   +  P  + +D     ++W D++LD
Sbjct: 43  FDCVDKVVYWTDISE-PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLD 101
Query: 100 LIQKISYNGGNRQII-RRNLPNPMGIAVH--KSDVYWVDRN 137
            I+    +G  R+++    L NP GI     + ++YW D N
Sbjct: 102 RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	407
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	4e-53
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	8e-15
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	4e-04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	4e-47
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	6e-05
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	1e-43
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	2e-14
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	3e-05
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	1e-04
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	9e-42
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	2e-30
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	6e-15
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	3e-06
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-41
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	2e-31
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	2e-06
3v65_B	386	Low-density lipoprotein receptor-related protein;	2e-40
3v65_B	386	Low-density lipoprotein receptor-related protein;	1e-16
3v65_B	386	Low-density lipoprotein receptor-related protein;	4e-04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	8e-40
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	8e-17
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	7e-07
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	6e-38
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	3e-15
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	2e-13
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	9e-07
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	6e-36
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	8e-17
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	6e-12
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	2e-09
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	1e-30
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	9e-19
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	2e-13
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	4e-06
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	3e-14
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	2e-08
2wph_E	59	Coagulation factor IXA light chain; serine proteas	3e-08
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	4e-08
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	7e-08
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	1e-07
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	6e-06
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	3e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	4e-04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	5e-04
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	5e-04

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  188 bits (477), Expect = 4e-53
 Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 10/229 (4%)

Query: 42  PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
           P+   +YW D+G   +I K  L+G    S+V+  I  P  +T+D+ +  +YWVD+KL  I
Sbjct: 523 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 582

Query: 102 QKISYNGGNRQIIRRN---LPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
             I  NGGNR+ I  +   L +P  +AV +  V+W D     ++ A++L  +++     +
Sbjct: 583 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV---NLL 639

Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPC--FRTGNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
              L    D+ +F  + QP    N C      NGGC+ LC   P +   +   + C C  
Sbjct: 640 AENLLSPEDMVLFHNLTQPRG-VNWCERTTLSNGGCQYLCLPAP-QINPHSPKFTCACPD 697

Query: 217 GTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNV 265
           G   A D + C T  E  V +  T    L +  T       T   + + 
Sbjct: 698 GMLLARDMRSCLTEAEAAVATQETSTVRLKVSSTAVRTQHTTTRPVPDT 746

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 75.6 bits (185), Expect = 8e-15
 Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 16/134 (11%)

Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDG----SKWTSIVSNGISMPRDLTIDMQTHDVYWVD 95
                  +YW D  Q   I  + LD     S + +++S  I  P  L +D    ++YW D
Sbjct: 431 TEVASNRIYWSDLSQ-RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD 489

Query: 96  AKLDLIQKISYNGGNRQ-IIRRNLPNPMGIAVH--KSDVYWVDRNLR-TVYKAS------ 145
           + L  +      G  R+ + R N   P  I V      +YW D      + K        
Sbjct: 490 SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 549

Query: 146 -KLASTNITLPTPI 158
             L + NI  P  I
Sbjct: 550 YSLVTENIQWPNGI 563

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 11/130 (8%)

Query: 48  YWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN 107
            ++ +     + K  LD S++TS++ N +     L  ++ ++ +YW D    +I     +
Sbjct: 396 AYLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLD 454

Query: 108 GGN-----RQIIRRNLPNPMGIAVH--KSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
             +       +I R++  P G+AV    S++YW D  L TV  A        TL    R 
Sbjct: 455 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL---FRE 511

Query: 161 GLSGLRDIAI 170
             S  R I +
Sbjct: 512 NGSKPRAIVV 521

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  170 bits (431), Expect = 4e-47
 Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 10/196 (5%)

Query: 42  PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
           P+   +YW D+G   +I K  L+G    S+V+  I  P  +T+D+ +  +YWVD+KL  I
Sbjct: 505 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564

Query: 102 QKISYNGGNRQIIRRN---LPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
             I  NGGNR+ I  +   L +P  +AV +  V+W D     ++ A++L  +++ L   +
Sbjct: 565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL---L 621

Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPC--FRTGNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
              L    D+ +F  + QP    N C      NGGC+ LC   P   P +   + C C  
Sbjct: 622 AENLLSPEDMVLFHQLTQPRG-VNWCERTTLSNGGCQYLCLPAPQINPHSP-KFTCACPD 679

Query: 217 GTPSASDPKKCTTMDE 232
           G   A D + C T  E
Sbjct: 680 GMLLARDMRSCLTEAE 695

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 44.4 bits (104), Expect = 6e-05
 Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 11/130 (8%)

Query: 48  YWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN 107
            ++ +     + K  LD S++TS++ N +     L  ++ ++ +YW D    +I     +
Sbjct: 378 AYLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLD 436

Query: 108 GGNRQ-----IIRRNLPNPMGIAVH--KSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
             +       +I R++  P G+AV    S++YW D  L TV  A        TL    R 
Sbjct: 437 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL---FRE 493

Query: 161 GLSGLRDIAI 170
             S  R I +
Sbjct: 494 QGSKPRAIVV 503

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score =  156 bits (394), Expect = 1e-43
 Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 10/193 (5%)

Query: 42  PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
           P+   +YW D+G   +I K  L+G    S+V+  I  P  +T+D+ +  +YWVD+KL  I
Sbjct: 211 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270

Query: 102 QKISYNGGNRQIIRRN---LPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
             I  NGGNR+ I  +   L +P  +AV +  V+W D     ++ A++L  +++ L   +
Sbjct: 271 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL---L 327

Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRT--GNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
              L    D+ +F  + QP    N C RT   NGGC+ LC   P   P +   + C C  
Sbjct: 328 AENLLSPEDMVLFHNLTQPRG-VNWCERTTLSNGGCQYLCLPAPQINPHSP-KFTCACPD 385

Query: 217 GTPSASDPKKCTT 229
           G   A D + C T
Sbjct: 386 GMLLARDMRSCLT 398

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 73.3 bits (179), Expect = 2e-14
 Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 16/132 (12%)

Query: 42  PLPRLLYWIDYGQYPRIGKSYLDG----SKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK 97
                +YW D  Q   I  + LD     S + +++S  I  P  L +D    ++YW D+ 
Sbjct: 121 VASNRIYWSDLSQR-MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV 179

Query: 98  LDLIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSD--VYWVDRNLR-TVYKAS-------K 146
           L  +      G  R+ + R N   P  I V      +YW D      + K          
Sbjct: 180 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 239

Query: 147 LASTNITLPTPI 158
           L + NI  P  I
Sbjct: 240 LVTENIQWPNGI 251

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 72  VSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN-----RQIIRRNLPNPMGIAV 126
           +   +     L  ++ ++ +YW D    +I     +  +       +I R++  P G+AV
Sbjct: 107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 166

Query: 127 --HKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAI 170
               S++YW D  L TV  A        TL    R   S  R I +
Sbjct: 167 DWIHSNIYWTDSVLGTVSVADTKGVKRKTL---FRENGSKPRAIVV 209

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 33/187 (17%), Positives = 62/187 (33%), Gaps = 17/187 (9%)

Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTE 241
           N C    NGGC  +C    +        Y+C C  G       ++C  +DE     T ++
Sbjct: 1   NEC-LDNNGGCSHVCNDLKI-------GYECLCPDGF-QLVAQRRCEDIDECQDPDTCSQ 51

Query: 242 IRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASS 301
           +                   L               LF   R   +   +  +  +S   
Sbjct: 52  LCVNLEGGYKCQCEEGFQ--LDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIP 109

Query: 302 NLTNVVGVEFDYADDKILFTQIRPWA-KIAWIPTTNPSSA-----SSNLTNVVGVEFDYA 355
           NL NVV ++ + A ++I ++ +         +   +  S+     S ++    G+  D+ 
Sbjct: 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 169

Query: 356 DDKILFT 362
              I +T
Sbjct: 170 HSNIYWT 176

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score =  154 bits (390), Expect = 9e-42
 Identities = 79/335 (23%), Positives = 146/335 (43%), Gaps = 16/335 (4%)

Query: 42  PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
           P    +YW D+G+ P+I ++ +DGS    I+++ I  P  LT+D +   +YW DAKL+ I
Sbjct: 136 PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 195

Query: 102 QKISYNGGNRQI-IRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
            K + +G NRQ  ++ +LP+P  + + +  +YW D +  ++   +K     +     I +
Sbjct: 196 HKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLRE---IHS 252

Query: 161 GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
            +    DI  F    QP   N       NGGC  LC   P      K  Y+C C TG   
Sbjct: 253 DIFSPMDIHAFSQQRQPNATNPCGID--NGGCSHLCLMSP-----VKPFYQCACPTGVKL 305

Query: 221 ASDPKKCTTMD-EYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILF 279
             + K C     E L+ + RT++R + LD          + ++ + + +++D  +  I +
Sbjct: 306 LENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYW 365

Query: 280 TQIRPWA-KIAWIPTTNPSS-ASSNLTNVVGVEFDYADDKILFT-QIRPWAKIAWIPTTN 336
           T     A + ++I  +      ++ + +  G+  D+    + +T       ++  +  T 
Sbjct: 366 TDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM 425

Query: 337 PSSA-SSNLTNVVGVEFDYADDKILFTQIRPWAKI 370
                S +L     +  D     + +T      KI
Sbjct: 426 RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKI 460

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score =  122 bits (307), Expect = 2e-30
 Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 15/187 (8%)

Query: 42  PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
           P+   +YW D+G+ P+I ++ LDGS    +V+  +  P  L +D     +YW DAK D I
Sbjct: 444 PMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKI 503

Query: 102 QKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
           + ++ +G  R+ ++   +P+  G  +    VYW D   R++ +  K ++    +      
Sbjct: 504 EVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVI------ 557

Query: 161 GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
            +  L D+      N      +      NGGC  LC   P          +C C  G   
Sbjct: 558 -IDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQG-------LRCACPIGFEL 609

Query: 221 ASDPKKC 227
            SD K C
Sbjct: 610 ISDMKTC 616

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 75.6 bits (185), Expect = 6e-15
 Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKW-TSIVSNGISMPRDLTIDMQTHDVYWVDAKL 98
           F     L+YW D  +   I ++  + ++   ++V +G+  P  L  D     +YW D++ 
Sbjct: 47  FVFSHGLIYWSDVSE-EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSET 105

Query: 99  DLIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSD--VYWVDRN-LRTVYKASKLASTNITL 154
           + I+  + +G  R+ +  + L  P  IA+  S   +YW D   +  + +A    S+   +
Sbjct: 106 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII 165

Query: 155 PT 156
             
Sbjct: 166 IN 167

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 8/151 (5%)

Query: 226 KCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPW 285
                   L+++ R ++R +             V  L +   V+F ++   I ++ +   
Sbjct: 4   HHHHHAPLLLYANRRDLRLVDATNGKENATI-VVGGLEDAAAVDFVFSHGLIYWSDVSEE 62

Query: 286 A-KIAWIPTTNPSS--ASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA-- 340
           A K      T        S L +  G+  D+  +K+ +T      +I             
Sbjct: 63  AIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTD-SETNRIEVSNLDGSLRKVL 121

Query: 341 -SSNLTNVVGVEFDYADDKILFTQIRPWAKI 370
               L     +  D +   + +T      KI
Sbjct: 122 FWQELDQPRAIALDPSSGFMYWTDWGEVPKI 152

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score =  154 bits (389), Expect = 1e-41
 Identities = 69/288 (23%), Positives = 129/288 (44%), Gaps = 21/288 (7%)

Query: 42  PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
           P    +YW ++G  P+I ++ +DGS+ T++V N +     LTID     +YW D   +LI
Sbjct: 132 PAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTNLI 190

Query: 102 QKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTG 161
           +  +  G NR++I  +LP+P G+  ++  +YW D + R++ +A+K +  N T+   I+  
Sbjct: 191 ESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTI---IQGH 247

Query: 162 LSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSA 221
           L  + DI +F    Q            NG C  LC + PV        + C C       
Sbjct: 248 LDYVMDILVFHSSRQSGWNECAS---SNGHCSHLCLAVPVG------GFVCGCPAHYSLN 298

Query: 222 SDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQ 281
           +D + C+    +L+FS ++ I  + +D   +      + +L NV  +++D  D ++ +  
Sbjct: 299 ADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWID 358

Query: 282 IRPWA-KIAWIPTTNPSS-------ASSNLTNVVGVEFDYADDKILFT 321
            R    + A    +   +       + +       +  D     I +T
Sbjct: 359 SRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWT 406

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score =  125 bits (314), Expect = 2e-31
 Identities = 43/194 (22%), Positives = 84/194 (43%), Gaps = 12/194 (6%)

Query: 42  PLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
           P    +Y+ +   + P+I ++ LDG++   +  +G+S P  L +D +   ++W D+ L  
Sbjct: 441 PEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRR 500

Query: 101 IQKISYNGGNRQIIRR-NLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
           I+    +G NR ++   N+  P+G+ V ++ +YW+D+  + + K            T ++
Sbjct: 501 IESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGR---TKVQ 557

Query: 160 TGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTP 219
             ++ L DI     +N      +PC    NGGC  +C        +     +C C     
Sbjct: 558 ARIAQLSDIHAVKELNLQEYRQHPCA-QDNGGCSHIC------LVKGDGTTRCSCPMHLV 610

Query: 220 SASDPKKCTTMDEY 233
              D   C     +
Sbjct: 611 LLQDELSCGGTKHH 624

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 9/146 (6%)

Query: 231 DEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKI-- 288
           + +L+FS R +IR + L+     V    ++ +     ++FD  D++I +T I     I  
Sbjct: 6   EAFLLFSRRADIRRISLETNNNNVAI-PLTGVKEASALDFDVTDNRIYWTDISLK-TISR 63

Query: 289 AWIPTTNPSS-ASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA---SSNL 344
           A++  +         L    G+  D+    + +       +I                +L
Sbjct: 64  AFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTN-RIEVSKLDGQHRQVLVWKDL 122

Query: 345 TNVVGVEFDYADDKILFTQIRPWAKI 370
            +   +  D A+  + +T+     KI
Sbjct: 123 DSPRALALDPAEGFMYWTEWGGKPKI 148

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score =  147 bits (371), Expect = 2e-40
 Identities = 59/188 (31%), Positives = 85/188 (45%), Gaps = 14/188 (7%)

Query: 42  PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
           P+   +YW D+G  PRI  S +DGS    I    +  P  LTID     +YWVDAK  +I
Sbjct: 211 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 270

Query: 102 QKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
           ++ + +G +R+ +I + LP+P  I V +  +YW D + +++  A+K    N      IR 
Sbjct: 271 ERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ---EIIRN 327

Query: 161 GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
            L    DI       QP  +N       NGGC  LC            +Y C C TG   
Sbjct: 328 KLHFPMDIHTLHPQRQPAGKNR--CGDNNGGCTHLCLPSG-------QNYTCACPTGF-R 377

Query: 221 ASDPKKCT 228
             +   C 
Sbjct: 378 KINSHACA 385

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 79.8 bits (196), Expect = 1e-16
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 12/130 (9%)

Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
           F     L++W D     RI ++ L+GS    +VS G+  P  L +D     +YW D+   
Sbjct: 123 FHHRRELVFWSDVTL-DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTS 181

Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSD--VYWVDRNLR-TVYKAS-------KLA 148
            I+  + +G +R+ ++ ++L  P  IA+H  +  +YW D      +  +S        +A
Sbjct: 182 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA 241

Query: 149 STNITLPTPI 158
            T++  P  +
Sbjct: 242 DTHLFWPNGL 251

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 8/52 (15%)

Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
             C    NGGC Q C              +C C TG     D + C  ++E 
Sbjct: 4   ENC-NVNNGGCAQKCQMIRG-------AVQCTCHTGYRLTEDGRTCQDVNEC 47

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score =  143 bits (362), Expect = 8e-40
 Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 10/194 (5%)

Query: 41  SPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
            P+   +YW D+G   +I K  L+G    S+V+  I  P  +T+D+ +  +YWVD+KL  
Sbjct: 128 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 187

Query: 101 IQKISYNGGNRQIIRRN---LPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTP 157
           I  I  NGGNR+ I  +   L +P  +AV +  V+W D     ++ A++L  +++ L   
Sbjct: 188 ISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL--- 244

Query: 158 IRTGLSGLRDIAIFDIVNQPPDENNPC--FRTGNGGCEQLCFSYPVEFPQNKLHYKCDCA 215
           +   L    D+ +F  + QP    N C      NGGC+ LC   P   P +   + C C 
Sbjct: 245 LAENLLSPEDMVLFHNLTQPRG-VNWCERTTLSNGGCQYLCLPAPQINPHSP-KFTCACP 302

Query: 216 TGTPSASDPKKCTT 229
            G   A D + C T
Sbjct: 303 DGMLLARDMRSCLT 316

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 79.7 bits (196), Expect = 8e-17
 Identities = 38/175 (21%), Positives = 62/175 (35%), Gaps = 15/175 (8%)

Query: 7   LASLIWAIRLALRLLKKKKKLKTSFRSANTTSP----FSPLPRLLYWIDYGQYPRIGKSY 62
           +A L +  R  +R +   +   TS    N  +            +YW D  Q   I  + 
Sbjct: 1   IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQ-RMICSTQ 58

Query: 63  LDGSKWTS----IVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQ-IIRRN 117
           LD +   S    ++S  I  P  L +D    ++YW D+ L  +      G  R+ + R N
Sbjct: 59  LDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN 118

Query: 118 LPNPMGIAVH--KSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAI 170
              P  I V      +YW D       K   L   +I   + +   +     I +
Sbjct: 119 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVTENIQWPNGITL 171

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 49.7 bits (118), Expect = 7e-07
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 13/147 (8%)

Query: 233 YLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWA-KIAWI 291
           YL F+ R E+R + LD +        + NL NVV ++ + A ++I ++ +         +
Sbjct: 3   YLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL 59

Query: 292 PTTNPSS-----ASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA---SSN 343
              +  S      S ++    G+  D+    I +T       ++   T           N
Sbjct: 60  DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD-SVLGTVSVADTKGVKRKTLFREN 118

Query: 344 LTNVVGVEFDYADDKILFTQIRPWAKI 370
            +    +  D     + +T     AKI
Sbjct: 119 GSKPRAIVVDPVHGFMYWTDWGTPAKI 145

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score =  138 bits (349), Expect = 6e-38
 Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 11/193 (5%)

Query: 42  PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
           P    +YW D+G+ P+I ++ +DGS    I+++ I  P  LT+D +   +YW DAKL+ I
Sbjct: 131 PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 190

Query: 102 QKISYNGGNRQI-IRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
            K + +G NRQ  ++ +LP+P  + + +  +YW D +  ++   +K     +     I +
Sbjct: 191 HKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLRE---IHS 247

Query: 161 GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
            +    DI  F    QP   N       NGGC  LC   P      K  Y+C C TG   
Sbjct: 248 DIFSPMDIHAFSQQRQPNATNPCG--IDNGGCSHLCLMSP-----VKPFYQCACPTGVKL 300

Query: 221 ASDPKKCTTMDEY 233
             + K C   + +
Sbjct: 301 LENGKTCKDGNSH 313

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 74.7 bits (183), Expect = 3e-15
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGS-KWTSIVSNGISMPRDLTIDMQTHDVYWVDAKL 98
           F     L+YW D  +   I ++  + +    ++V +G+  P  L  D     +YW D++ 
Sbjct: 42  FVFSHGLIYWSDVSE-EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSET 100

Query: 99  DLIQKISYNGGNRQI-IRRNLPNPMGIAVHKSD--VYWVDRNLR-TVYKASKLASTNITL 154
           + I+  + +G  R++   + L  P  IA+  S   +YW D      + +A    S+   +
Sbjct: 101 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII 160

Query: 155 PTPIRTGLSGLRDIAI 170
              I + +     + +
Sbjct: 161 ---INSEIYWPNGLTL 173

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 69.7 bits (170), Expect = 2e-13
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 12/134 (8%)

Query: 42  PLPRLLYWIDYGQYPRIGKSYL-DGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
             P LLY         +      +G +  +IV  G+     +        +YW D   + 
Sbjct: 3   SAPLLLYANRRD----LRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA 58

Query: 101 IQKISYNGGNRQ--IIRRNLPNPMGIAV-HKSD-VYWVDRNLRTVYKASKLASTNITLPT 156
           I++  +N       ++   L +P G+A     + +YW D     +  ++   S    L  
Sbjct: 59  IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL-- 116

Query: 157 PIRTGLSGLRDIAI 170
                L   R IA+
Sbjct: 117 -FWQELDQPRAIAL 129

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 49.3 bits (117), Expect = 9e-07
 Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 8/149 (5%)

Query: 231 DEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWA-KIA 289
              L+++ R ++R +             V  L +   V+F ++   I ++ +   A K  
Sbjct: 4   APLLLYANRRDLRLVDATNGKENATI-VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 62

Query: 290 WIPTTNPSS--ASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS---ASSNL 344
               T        S L +  G+  D+  +K+ +T      +I                 L
Sbjct: 63  EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTD-SETNRIEVSNLDGSLRKVLFWQEL 121

Query: 345 TNVVGVEFDYADDKILFTQIRPWAKIAWI 373
                +  D +   + +T      KI   
Sbjct: 122 DQPRAIALDPSSGFMYWTDWGEVPKIERA 150

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score =  133 bits (336), Expect = 6e-36
 Identities = 59/188 (31%), Positives = 85/188 (45%), Gaps = 14/188 (7%)

Query: 42  PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
           P+   +YW D+G  PRI  S +DGS    I    +  P  LTID     +YWVDAK  +I
Sbjct: 168 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 227

Query: 102 QKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
           ++ + +G +R+ +I + LP+P  I V +  +YW D + +++  A+K    N  +   IR 
Sbjct: 228 ERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEI---IRN 284

Query: 161 GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
            L    DI       QP  +N       NGGC  LC             Y C C TG   
Sbjct: 285 KLHFPMDIHTLHPQRQPAGKNRCGDN--NGGCTHLCLPSGQN-------YTCACPTGFRK 335

Query: 221 ASDPKKCT 228
            +    C 
Sbjct: 336 INS-HACA 342

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 80.3 bits (197), Expect = 8e-17
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 6/135 (4%)

Query: 39  PFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKL 98
            F     L++W D     RI ++ L+GS    +VS G+  P  L +D     +YW D+  
Sbjct: 79  DFHHRRELVFWSDVTL-DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT 137

Query: 99  DLIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSD--VYWVDRNLRTVYKASKLASTNITLP 155
             I+  + +G +R+ ++ ++L  P  IA+H  +  +YW D       +AS +  +     
Sbjct: 138 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-- 195

Query: 156 TPIRTGLSGLRDIAI 170
               T L     + I
Sbjct: 196 IIADTHLFWPNGLTI 210

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 65.3 bits (158), Expect = 6e-12
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 48  YWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN 107
             + +     I +     S++T ++ N +     L    +   V+W D  LD I + + N
Sbjct: 45  PVLLFANRIDIRQVLPHRSEYT-LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN 103

Query: 108 GGNRQ-IIRRNLPNPMGIAV--HKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSG 164
           G N + ++   L +P G+AV      +YW D     +  A+   +    L   +   L  
Sbjct: 104 GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL---LWQSLEK 160

Query: 165 LRDIAI 170
            R IA+
Sbjct: 161 PRAIAL 166

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 57.6 bits (138), Expect = 2e-09
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 16/144 (11%)

Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC--TTMDEYLVFSTR 239
           N C     G C Q C +           ++C C  G     D + C     +  L+F+ R
Sbjct: 2   NEC--AEEGYCSQGCTNSEG-------AFQCWCEAGYELRPDRRSCKALGPEPVLLFANR 52

Query: 240 TEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQI-RPWAKIAWIPTTNPSS 298
            +IR +    +   +    ++NL N + ++F +  + + ++ +       A +  +N   
Sbjct: 53  IDIRQVLPHRSEYTLL---LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109

Query: 299 -ASSNLTNVVGVEFDYADDKILFT 321
             S+ L +  G+  D+  DK+ +T
Sbjct: 110 VVSTGLESPGGLAVDWVHDKLYWT 133

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score =  117 bits (294), Expect = 1e-30
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 42  PLPRLLYWIDYGQ-YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
           P+   LYW D+ +  P+I  S++DG+    +  + + +P  LT D  +  + WVDA    
Sbjct: 131 PVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR 190

Query: 101 IQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
            + ++     R+ +   L  P  +  +  ++Y+ D    +V       S  +    P   
Sbjct: 191 AECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHP--H 248

Query: 161 GLSGLRDIAIFD 172
             + L  I I  
Sbjct: 249 KQTRLYGITIAL 260

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 84.5 bits (209), Expect = 9e-19
 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 10/142 (7%)

Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
           F  + +++YW D  + P IG++ L G + T+I+   +  P  + +D     ++W D++LD
Sbjct: 43  FDCVDKVVYWTDISE-PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLD 101

Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSD--VYWVDRNLRT--VYKASKLASTNITL 154
            I+    +G  R+ +    L NP GI        +YW D N     +  +    +    L
Sbjct: 102 RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL 161

Query: 155 PTPIRTGLSGLRDIAIFDIVNQ 176
               +  L     +   D  + 
Sbjct: 162 ---AQDNLGLPNGLTF-DAFSS 179

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 57  RIGKSYLDGSKWT-----SIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR 111
           +I +  L+ +        + +     +   L  D     VYW D     I + S +GG  
Sbjct: 11  KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP 70

Query: 112 Q-IIRRNLPNPMGIAV-HKSD-VYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDI 168
             IIR++L +P GIA+ H    ++W D  L  +  A    +    L     TGL   R I
Sbjct: 71  TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL---FDTGLVNPRGI 127

Query: 169 AI 170
             
Sbjct: 128 VT 129

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 233 YLVFSTRTEIRALHLD-PTLTAVPFKTV--SNLTNVVGVEFDYADDKILFTQIRPWA-KI 288
           +L+F+   +I  L L+  T+     K         ++G+ FD  D  + +T I   +   
Sbjct: 3   HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62

Query: 289 AWIPTTNPSS-ASSNLTNVVGVEFDYADDKILFT 321
           A +    P++    +L +  G+  D+    I +T
Sbjct: 63  ASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWT 96

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 71.7 bits (175), Expect = 3e-14
 Identities = 17/125 (13%), Positives = 32/125 (25%), Gaps = 6/125 (4%)

Query: 33  SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVY 92
             N   P       +Y++D  +   I    ++      +    I           +   Y
Sbjct: 184 DCNCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHY----NVYGSLIFY 239

Query: 93  WVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNI 152
                   +  +  +G   + + +       I V    VY+ D      Y  S      I
Sbjct: 240 QRGGDNPALCVVKNDGTGFKELAKG--EFCNINVTSQYVYFTDFVSNKEYCTSTQNPDTI 297

Query: 153 TLPTP 157
               P
Sbjct: 298 KALQP 302

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 7/55 (12%)

Query: 179 DENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
           D+   C    NGGCEQ C  +            C C  G    +D   CT   EY
Sbjct: 3   DDQLIC-VNENGGCEQYCSDHTGT------KRSCRCHEGYSLLADGVSCTPTVEY 50

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59

 Score = 49.0 bits (117), Expect = 3e-08
 Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 7/50 (14%)

Query: 184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
           C    NG CEQ C         NK    C C  G   A + K C     +
Sbjct: 2   C-NIKNGRCEQFC----KNSADNK--VVCSCTEGYRLAENQKSCEPAVPF 44

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55

 Score = 48.5 bits (116), Expect = 4e-08
 Identities = 14/50 (28%), Positives = 16/50 (32%), Gaps = 8/50 (16%)

Query: 184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
           C    NG C+Q C               C CA G   A + K C     Y
Sbjct: 4   C-SLDNGDCDQFCHEEQN-------SVVCSCARGYTLADNGKACIPTGPY 45

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53

 Score = 47.8 bits (114), Expect = 7e-08
 Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 7/50 (14%)

Query: 184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
           C    NGGCEQ C  +            C C  G    +D   CT   EY
Sbjct: 2   C-VNENGGCEQYCSDHTGT------KRSCRCHEGYSLLADGVSCTPTVEY 44

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 8/50 (16%)

Query: 184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
           C    NGGC+Q C              +C CA G     D K C + + +
Sbjct: 1   C-SLDNGGCDQFCREERS-------EVRCSCAHGYVLGDDSKSCVSTERF 42

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 5/121 (4%)

Query: 51  DYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN 110
             G Y R+ K     +  T +  NG+  P+ L +D     VY  D    ++   + +   
Sbjct: 41  SEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGTVYVTDFNNRVVTLAAGSNNQ 99

Query: 111 RQIIRRNLPNPMGIAVHKS-DVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIA 169
             +    L  P G+AV     VY  DR    V    KLA+ + T      TGL+    +A
Sbjct: 100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVV---KLAAGSKTQTVLPFTGLNDPDGVA 156

Query: 170 I 170
           +
Sbjct: 157 V 157

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 7/126 (5%)

Query: 47  LYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISY 106
           +Y  D G   R+ K        T +   G++ P  + +D  + +VY  D   + + K+  
Sbjct: 121 VYVADRGNN-RVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNVYVTDTDNNRVVKLEA 178

Query: 107 NGGNRQIIRR-NLPNPMGIAVHKSD-VYWVDRNLRTVYKASKLASTNITLPTPIRTGLSG 164
              N+ ++   ++  P GIAV ++  VY  + N   V    KL + + T      TGL+ 
Sbjct: 179 ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVV---KLLAGSTTSTVLPFTGLNT 235

Query: 165 LRDIAI 170
              +A+
Sbjct: 236 PLAVAV 241

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 8e-05
 Identities = 37/309 (11%), Positives = 77/309 (24%), Gaps = 105/309 (33%)

Query: 10  LIWAIRLALRLLKKKKKL---------KTSFRSANTTSPFSPLPRL---LYWIDYGQYPR 57
               +R AL  L+  K +         KT   + +    +    ++   ++W++      
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 58  IGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRN 117
                                P  +   +Q            L+ +I  N  +R     N
Sbjct: 195 ---------------------PETVLEMLQK-----------LLYQIDPNWTSRSDHSSN 222

Query: 118 LPNPMGIAVHKSDVYWVDRN-------LRTVYKASKLASTNITLPTPIRTGLSGLRDIAI 170
           +   +     +       +        L  V  A    + N++    + T     R   +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT-----RFKQV 277

Query: 171 FDIVNQ------PPDENNPCFRTGNG--------GC------EQLCFSYPV--------- 201
            D ++         D ++                 C       ++  + P          
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 202 -EFP---QNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLD----PTLTA 253
            +      N  H  CD           K  T ++  L      E R +       P    
Sbjct: 338 RDGLATWDNWKHVNCD-----------KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 254 VPFKTVSNL 262
           +P   +S +
Sbjct: 387 IPTILLSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 39/292 (13%), Positives = 82/292 (28%), Gaps = 91/292 (31%)

Query: 16  LALRLLKKKKKLKTSFRSANTTSPF--SPLPRLL--------YWIDYGQYPRIGKSYLDG 65
           L   L  + + L    R   TT+P   S +   +         W            +++ 
Sbjct: 307 LLKYLDCRPQDLP---REVLTTNPRRLSIIAESIRDGLATWDNW-----------KHVNC 352

Query: 66  SKWTSIVSNGIS----------------MPRDLTIDMQTHDVYWVDAKLDLIQKISYNGG 109
            K T+I+ + ++                 P    I      + W D     +  +     
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 110 NRQIIRRNLPNPMGIAVH---------KSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
              ++ +  P    I++            + Y + R++   Y   K   ++  +P  +  
Sbjct: 413 KYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-- 469

Query: 161 GLSGLRDIAIFD-----IVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCA 215
                 D   +      + N    E    FR        +   +   F + K+ +     
Sbjct: 470 ------DQYFYSHIGHHLKNIEHPERMTLFR-------MVFLDF--RFLEQKIRHDSTAW 514

Query: 216 TGTPSA----------------SDPKKCTTMDEYLVFSTRTE---IRALHLD 248
             + S                 +DPK    ++  L F  + E   I + + D
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 9/51 (17%)

Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDE 232
           N C    NGGC  +C    +        Y+C C  G    +  ++C  +DE
Sbjct: 30  NEC-LDNNGGCSYVCNDLKIG-------YECLCPDGFQLVAQ-RRCEDIDE 71

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 6/116 (5%)

Query: 57  RIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQI-IR 115
           RIGK   DG+ +   + N  S P  +T+      +++ + + + I +I+  G   +  + 
Sbjct: 126 RIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITNTGKLEEYPLP 184

Query: 116 RNLPNPMGIAVHKSD-VYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAI 170
            N   P+GI       +++V+     +    ++ +T       I T  +    I  
Sbjct: 185 TNAAAPVGITSGNDGALWFVEIMGNKIG---RITTTGEISEYDIPTPNARPHAITA 237

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 47  LYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISY 106
           +++ +     RIG+   DG      + N  S P  +T+    + +++ + + + I +I+ 
Sbjct: 112 IWFTEMNGN-RIGRITDDGKIREYELPNKGSYPSFITLG-SDNALWFTENQNNAIGRITE 169

Query: 107 NGGNRQI-IRRNLPNPMGIAVHKSD-VYWVDRNLRTVYKASKLASTNITLPTPIRTGLSG 164
           +G   +  I      P+GI     D +++V+     +    ++ ++       I T  + 
Sbjct: 170 SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKI---GRITTSGEITEFKIPTPNAR 226

Query: 165 LRDIAI 170
              I  
Sbjct: 227 PHAITA 232

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 10/104 (9%)

Query: 46  LLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKIS 105
            +   +     +I      G       +  +  PR +T+D +   +  V+ K+  +    
Sbjct: 90  DIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFD 148

Query: 106 YNGGNRQIIRR-----NLPNPMGIAV-HKSDVYWVDRNLRTVYK 143
            NG    ++ +     +L  P G+ V  K +++  D     V  
Sbjct: 149 QNG---NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKV 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	407
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	100.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	100.0
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	100.0
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	100.0
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	100.0
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	100.0
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	100.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	100.0
3v65_B	386	Low-density lipoprotein receptor-related protein;	100.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	100.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	100.0
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.98
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.97
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.96
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.96
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.96
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.96
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.93
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.92
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.88
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.76
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.74
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.73
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.72
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.64
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.61
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.61
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.6
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.56
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.55
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.54
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.53
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.49
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.47
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.47
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.46
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.46
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.44
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.43
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.38
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.38
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.37
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.34
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.32
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.28
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.28
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.27
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.27
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.2
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.19
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.14
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.14
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.13
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.08
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.07
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.06
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.05
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.04
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.03
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.03
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.99
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.98
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.98
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.93
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.92
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.9
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.89
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.86
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	98.86
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.85
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.84
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.82
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.82
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.82
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.82
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.81
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.8
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.8
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.77
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.77
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.76
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.75
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.75
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.73
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.72
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	98.71
2wph_E	59	Coagulation factor IXA light chain; serine proteas	98.69
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.66
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	98.63
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.63
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.62
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	98.62
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.62
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.59
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.56
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.55
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.52
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.52
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.5
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.49
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.42
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.38
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.37
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.35
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.35
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.32
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.32
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.26
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.25
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.22
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.06
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.05
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.04
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.03
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.99
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.98
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.92
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.88
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.78
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.78
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	97.7
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.68
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.6
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	97.47
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.44
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.43
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.4
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	97.32
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.2
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.14
1aut_L	114	Activated protein C; serine proteinase, plasma cal	97.13
1szb_A	170	Mannose binding lectin-associated serine protease-	97.06
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.97
1nzi_A	159	Complement C1S component; calcium, innate immunity	96.89
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	96.88
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	96.83
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	96.66
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.64
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.64
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.58
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.57
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	96.57
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	96.53
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	96.52
2vh0_B	134	Activated factor XA light chain; serine protease,	96.42
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	96.35
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	96.35
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	96.15
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	95.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	95.81
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	95.62
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	95.6
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	95.31
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	95.31
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	95.21
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	94.97
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	94.9
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	94.79
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	94.78
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	94.67
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	94.67
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	94.65
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	94.53
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	94.52
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	94.27
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	94.2
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	94.18
1k32_A	1045	Tricorn protease; protein degradation, substrate g	93.99
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	93.9
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	93.75
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	93.51
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	93.45
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	93.31
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	92.62
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	92.38
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	92.37
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	92.14
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	91.89
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	91.68
2bou_A	143	EGF-like module containing mucin-like hormone rece	91.54
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	91.42
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	90.78
1k32_A	1045	Tricorn protease; protein degradation, substrate g	90.41
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	89.86
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	89.6
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	89.55
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	89.51
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	89.4
3dem_A	278	Complement factor MAsp-3; complement system, innat	88.97
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	88.65
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	88.65
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	88.6
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	88.05
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	88.04
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	87.89
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	86.78
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	86.49
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	85.75
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	85.31
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	83.88
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	83.03
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	82.43
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	82.22
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	82.13
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	82.04
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	81.4
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	81.3
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	81.26
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	80.91
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	80.35

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=100.00  E-value=4.2e-68  Score=556.82  Aligned_cols=365  Identities=23%  Similarity=0.408  Sum_probs=319.0

Q ss_pred             EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEE
Q psy950           14 IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw   93 (407)
                      |.+..++|+..++++...+..|++||+||.+|+||||||+..++|+|++|||+.+++++...+.+|+|||+|+.+++|||
T Consensus       108 I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~  187 (619)
T 3s94_A          108 IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW  187 (619)
T ss_dssp             EEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEE
Confidence            56778889999999988999999999999999999999997789999999999999999888999999999999999999


Q ss_pred             EeCCCCeEEEEecCCCeEEEEcc-CCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEee
Q psy950           94 VDAKLDLIQKISYNGGNRQIIRR-NLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFD  172 (407)
Q Consensus        94 ~d~~~~~I~~~~~dG~~~~~~~~-~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~  172 (407)
                      +|...++|++++++|..++.+.. .+.+|+||+++++.||||||.+++|.++++.+ |  ....++..++..|++|+++|
T Consensus       188 aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~t-g--~~~~~i~~~~~~p~~i~v~~  264 (619)
T 3s94_A          188 ADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYT-G--EGLREIHSDIFSPMDIHAFS  264 (619)
T ss_dssp             EETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSS-C--CCCEECCSCCCCCSEEEECC
T ss_pred             EeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCC-C--cccEEEecCCCCCcEEEEEc
Confidence            99999999999999999977764 78999999999999999999999999999987 3  35678888888999999999


Q ss_pred             ecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc-cceeeeeecccceEEeecCCCC
Q psy950          173 IVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT-MDEYLVFSTRTEIRALHLDPTL  251 (407)
Q Consensus       173 ~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~-~~~~Ll~s~~~~I~~i~l~~~~  251 (407)
                      +.+||. +.|||.. +||+|+|+|++.|..     .+|+|.||.||.|.+|+++|.. +++||||+.+..|++++++...
T Consensus       265 ~~~qp~-~~n~C~~-~ng~Cs~lCl~~~~~-----~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~  337 (619)
T 3s94_A          265 QQRQPN-ATNPCGI-DNGGCSHLCLMSPVK-----PFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPD  337 (619)
T ss_dssp             GGGSCC-CCCTTTT-TGGGCSSEEEECSST-----TSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTT
T ss_pred             cccCCC-ccccccC-CCCcccceEECCCCC-----CCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCc
Confidence            999996 7899998 899999999998853     3699999999999999999994 7889999999999999998876


Q ss_pred             CeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEEeccCCeEEEEeCCCCC
Q psy950          252 TAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEFDYADDKILFTQIRPWA  327 (407)
Q Consensus       252 ~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAvDwi~~~LYwtd~~~~~  327 (407)
                      +.....++.++.++.|||||+.+++|||+|... .+|++++++|.....    ++. .|+||||||++++|||||... +
T Consensus       338 ~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~-~~I~r~~~~g~~~~~v~~~~~~-~p~GlAvD~~~~~lY~tD~~~-~  414 (619)
T 3s94_A          338 FTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEV-RAIRRSFIDGSGSQFVVTAQIA-HPDGIAVDWVARNLYWTDTGT-D  414 (619)
T ss_dssp             CCCEECCCSCCSSEEEEEEETTTTEEEEEETTT-TEEEEEETTSCSCEEEECSSCS-CCCEEEEETTTTEEEEEETTT-T
T ss_pred             cceeEEeccccCccEEEEEEcCCCeEEEEeCCC-CeEEEEEcCCCccEEEEECCCC-CcCceEEecccCcEEEEeCCC-C
Confidence            655556778889999999999999999999988 899999999865432    566 999999999999999999999 8


Q ss_pred             eEEEEECCCCcc--cc-cCCCceeEEEEcCCCCeEEEEeCCCCCcc--cccCCCCCCCcceeEEEeCCCcccee
Q psy950          328 KIAWIPTTNPSS--AS-SNLTNVVGVEFDYADDKILFTQIRPWAKI--AWIPTTNPSSASVNTILSRGKDEKAK  396 (407)
Q Consensus       328 ~I~v~~~~~~~r--l~-~~l~~P~~iavdp~~g~lywtd~~~~~~i--a~~dg~~~~~~~~~~l~~~~~~~~~~  396 (407)
                      +|++++++|..+  +. +.+.+|++|||||.+|+||||||+..++|  +.|||     +.++.|...+..+|.-
T Consensus       415 ~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG-----~~~~~l~~~~l~~P~G  483 (619)
T 3s94_A          415 RIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG-----SDRVVLVNTSLGWPNG  483 (619)
T ss_dssp             EEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTS-----CSCEEEECSSCSCEEE
T ss_pred             cEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC-----CccEEEEeCCCCCCee
Confidence            999999999865  43 58899999999999999999999988888  55555     4556555545555543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=100.00  E-value=7.9e-68  Score=555.35  Aligned_cols=365  Identities=22%  Similarity=0.395  Sum_probs=322.2

Q ss_pred             EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEE
Q psy950           14 IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw   93 (407)
                      |.+..++|+.+++++...+.+|++||+||..|+||||||+..++|+|++|||+.+++++. ++.+|+|||+|+.+++|||
T Consensus       104 I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~  182 (628)
T 4a0p_A          104 IEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYW  182 (628)
T ss_dssp             EEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEE
T ss_pred             EEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEE
Confidence            566778899889999889999999999999999999999867899999999999999986 7889999999999999999


Q ss_pred             EeCCCCeEEEEecCCCeEEEEccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeee
Q psy950           94 VDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDI  173 (407)
Q Consensus        94 ~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~  173 (407)
                      +|...++|++++++|..++++...+.+|+||++++++||||||.+++|.+++|.+ |  ...+++..++..|++|+++|+
T Consensus       183 aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~t-g--~~~~~l~~~~~~p~~i~v~~~  259 (628)
T 4a0p_A          183 TDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTS-G--QNRTIIQGHLDYVMDILVFHS  259 (628)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTT-C--CSCEEEECSCCSCCEEEEECG
T ss_pred             EECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCC-C--CceEEEecCCCCcceeeeeee
Confidence            9999999999999999998877889999999999999999999999999999987 3  467888888899999999999


Q ss_pred             cCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCe
Q psy950          174 VNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTA  253 (407)
Q Consensus       174 ~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~  253 (407)
                      .+||  +.|||.. +||+|+|+|++.+.+      +|+|.||.||.|.+|+++|..+++||||+.+..|+++.++.....
T Consensus       260 ~~q~--~~n~C~~-~ng~C~~~C~~~~~~------~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~  330 (628)
T 4a0p_A          260 SRQS--GWNECAS-SNGHCSHLCLAVPVG------GFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSP  330 (628)
T ss_dssp             GGSC--CCCTTTT-TGGGCSSEEEEETTT------EEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCC
T ss_pred             cccc--cceEecc-CCCCcchhhhcCCCC------CeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCc
Confidence            9998  6899998 899999999999842      799999999999999999999999999999999999999765443


Q ss_pred             eeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----------cCCCCccEEEEeccCCeEEEEeC
Q psy950          254 VPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----------SNLTNVVGVEFDYADDKILFTQI  323 (407)
Q Consensus       254 ~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----------~~~~~~~glAvDwi~~~LYwtd~  323 (407)
                      ....++.+++++.|||||+.+++|||+|... .+|+++.++|.....          .+. .|+||||||+++||||||.
T Consensus       331 ~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~-~~I~r~~~~g~~~~~v~~~~~~~~~~~~-~p~glAvD~~~~nLY~td~  408 (628)
T 4a0p_A          331 DIILPIHSLRNVRAIDYDPLDKQLYWIDSRQ-NMIRKAQEDGSQGFTVVVSSVPSQNLEI-QPYDLSIDIYSRYIYWTCE  408 (628)
T ss_dssp             CEECCCTTCSCEEEEEEETTTTEEEEEETTT-TEEEEEETTSCSCEEEEC--------CC-CEEEEEEETTTTEEEEEET
T ss_pred             eEEEEehhcCCceEEEEecCCCeEEEEecCc-ceEEEEEcCCCCceEEEEcccccccccC-CcceEEeeccCCeEEEEcC
Confidence            4455778889999999999999999999998 899999999875321          234 8999999999999999999


Q ss_pred             CCCCeEEEEECCCCcc--cc-cCCCceeEEEEcCCCCeEEEEeCCCCC-cccccCCCCCCCcceeEEEeCCCccceee
Q psy950          324 RPWAKIAWIPTTNPSS--AS-SNLTNVVGVEFDYADDKILFTQIRPWA-KIAWIPTTNPSSASVNTILSRGKDEKAKI  397 (407)
Q Consensus       324 ~~~~~I~v~~~~~~~r--l~-~~l~~P~~iavdp~~g~lywtd~~~~~-~ia~~dg~~~~~~~~~~l~~~~~~~~~~~  397 (407)
                      .. ++|++++++|..+  +. ..+.+|++|||||.+|+||||||+..+ +|   ...+|||+.++.|...+..+|..|
T Consensus       409 ~~-~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I---~r~~~dG~~~~~l~~~~l~~P~gl  482 (628)
T 4a0p_A          409 AT-NVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKI---ERAALDGTEREVLFFSGLSKPIAL  482 (628)
T ss_dssp             TT-TEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEE---EEEETTSCSCEEEECSSCSCEEEE
T ss_pred             CC-CEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeE---EEEeCCCCCcEEEEeccCCCccEE
Confidence            99 8999999999865  33 578999999999999999999998875 67   334455666676766666565444

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=100.00  E-value=1.5e-40  Score=321.25  Aligned_cols=206  Identities=30%  Similarity=0.587  Sum_probs=187.2

Q ss_pred             EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEE
Q psy950           14 IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw   93 (407)
                      |.+..++|...++++...+..|.+||+||..|+|||+|++..++|+|++|||+.+++++..++.+|+|||+|+.+++|||
T Consensus       103 I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~  182 (318)
T 3sov_A          103 IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW  182 (318)
T ss_dssp             EEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             EEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEE
Confidence            55677788888888888899999999999999999999986679999999999999999888999999999999999999


Q ss_pred             EeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEee
Q psy950           94 VDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFD  172 (407)
Q Consensus        94 ~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~  172 (407)
                      +|...++|+++++||++++++. ..+.+|+||+++++.+||+||.+++|.++++.+ |  .....+...+..|++|+++|
T Consensus       183 aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~-G--~~~~~i~~~~~~P~~i~v~~  259 (318)
T 3sov_A          183 ADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYT-G--EGLREIHSDIFSPMDIHAFS  259 (318)
T ss_dssp             EETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTT-C--CSCEEEECCCSSCCCEEEEC
T ss_pred             EECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCC-C--CceEEEeCCCCCCcEEEEec
Confidence            9999999999999999998776 478999999999999999999999999999976 3  34567777788999999999


Q ss_pred             ecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          173 IVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       173 ~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      +.+||. ..|||.. +||+|+|+|++.|..     .+|+|.||.||.|.+|+++|.+
T Consensus       260 ~~~q~~-~~n~C~~-~ng~Cs~~C~~~~~~-----~~~~C~C~~g~~l~~d~~~c~~  309 (318)
T 3sov_A          260 QQRQPN-ATNPCGI-DNGGCSHLCLMSPVK-----PFYQCACPTGVKLLENGKTCKD  309 (318)
T ss_dssp             GGGSCC-CCCTTTT-TGGGCSSEEEECSST-----TSEEEECSTTCCBCTTSSCBCC
T ss_pred             cccccc-ccccccc-CCCCcceEEecCCCC-----CCeEEECCCCCEECCCCCCCCC
Confidence            999996 6899987 899999999998863     3699999999999999999984

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=100.00  E-value=3e-39  Score=338.31  Aligned_cols=203  Identities=27%  Similarity=0.535  Sum_probs=187.1

Q ss_pred             EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEE
Q psy950           14 IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw   93 (407)
                      |.+..++|+.+++++..++.+|++||+||.+|+|||||++..++|+|++|||+++++++...+.+|+|||||+.+++|||
T Consensus       416 I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~  495 (619)
T 3s94_A          416 IEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYW  495 (619)
T ss_dssp             EEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEE
Confidence            56677889999999988999999999999999999999987789999999999999999888999999999999999999


Q ss_pred             EeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEee
Q psy950           94 VDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFD  172 (407)
Q Consensus        94 ~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~  172 (407)
                      +|...++|++++++|+.++++. ..+.+|+||++++++||||||.+++|+++++.+ |   ..+++..++..|++|+++|
T Consensus       496 aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~-g---~~~~~~~~~~~~~~i~~~~  571 (619)
T 3s94_A          496 GDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRS-A---EREVIIDQLPDLMGLKATN  571 (619)
T ss_dssp             EETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETTEEEEECTTSSCEEEEESSS-C---CEEEEECSCCCEEEEEEEE
T ss_pred             EECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECCEEEEeecCCCeEEEEEcCC-C---ceEEEecCCCCCceeeecc
Confidence            9999999999999999998765 678999999999999999999999999999997 4   3577788899999999999


Q ss_pred             ecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccccc
Q psy950          173 IVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTM  230 (407)
Q Consensus       173 ~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~  230 (407)
                      +..|+  +.|+|.. +||+|+|+|++.++       +++|.||.||.|.+|+++|..|
T Consensus       572 ~~~~~--~~~~C~~-~ng~C~~~C~~~~~-------~~~C~C~~g~~l~~d~~~C~~p  619 (619)
T 3s94_A          572 VHRVI--GSNPCAE-ENGGCSHLCLYRPQ-------GLRCACPIGFELISDMKTCIVP  619 (619)
T ss_dssp             SSCCC--CCCGGGS-GGGGCSSEEEEETT-------EEEEECCTTCEECSSTTCEECC
T ss_pred             ccccc--ccccCCC-CCCChhHhhccCCC-------CeEEECCCCCEECCCCCcCCCC
Confidence            87765  7899998 89999999999987       5999999999999999999753

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=100.00  E-value=9e-39  Score=308.48  Aligned_cols=209  Identities=31%  Similarity=0.583  Sum_probs=183.6

Q ss_pred             EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEE
Q psy950           14 IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw   93 (407)
                      |.+...+|...++++...+..|++||+||..|+|||+|++..++|+|+++||+.+++++...+.+|+|||+|+.+++|||
T Consensus       101 I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~  180 (316)
T 1ijq_A          101 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYW  180 (316)
T ss_dssp             EEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEE
Confidence            44556677777888877889999999999999999999986569999999999999998878899999999999999999


Q ss_pred             EeCCCCeEEEEecCCCeEEEEc---cCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEE
Q psy950           94 VDAKLDLIQKISYNGGNRQIIR---RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAI  170 (407)
Q Consensus        94 ~d~~~~~I~~~~~dG~~~~~~~---~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i  170 (407)
                      +|...++|++++++|++++++.   ..+.+|+||+++++.|||+||.+++|.++++.+ |  ...+++..++..|++|++
T Consensus       181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~-g--~~~~~i~~~~~~p~~i~v  257 (316)
T 1ijq_A          181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT-G--SDVNLLAENLLSPEDMVL  257 (316)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT-C--CCCEEEECSCSCCCCEEE
T ss_pred             EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCC-C--cceEEEecCCCCceEEEE
Confidence            9999999999999999988775   357899999999999999999999999999976 3  356677777889999999


Q ss_pred             eeecCCCCCCCCCccCCC---cccccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          171 FDIVNQPPDENNPCFRTG---NGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       171 ~~~~~qp~~~~n~C~~~~---ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      +|+.+||. ..|+|.. +   ||+|+|+|++.|.... ...+|+|.||.||.|.+|+++|.
T Consensus       258 ~~~~~qp~-~~n~C~~-~~~~ng~Cs~~C~~~p~~~~-~~~~~~C~C~~g~~l~~d~~~C~  315 (316)
T 1ijq_A          258 FHNLTQPR-GVNWCER-TTLSNGGCQYLCLPAPQINP-HSPKFTCACPDGMLLARDMRSCL  315 (316)
T ss_dssp             ESGGGSCC-CCCTTSS-SSSGGGGCSSEEEECCCCST-TCCSEEEECCTTCEECTTSSCEE
T ss_pred             eccccCCc-ccccccc-cccCCCCcCcccCCCccccC-CCCCeEeeCCCCCEECCCCCccC
Confidence            99999997 7899997 7   9999999999874210 11369999999999999999995

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=100.00  E-value=3.7e-39  Score=315.58  Aligned_cols=203  Identities=31%  Similarity=0.564  Sum_probs=185.0

Q ss_pred             EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEE
Q psy950           14 IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw   93 (407)
                      |.+..++|...++++...+..|.+||+||..|+|||+|++..++|+|++|||+.+++++..++.+|+|||+|+.+++|||
T Consensus       140 I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~  219 (349)
T 3v64_C          140 IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYW  219 (349)
T ss_dssp             EEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEE
T ss_pred             EEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEE
Confidence            45667788888888888899999999999999999999987569999999999999998888999999999999999999


Q ss_pred             EeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEee
Q psy950           94 VDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFD  172 (407)
Q Consensus        94 ~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~  172 (407)
                      +|...++|++++++|++++.+. ..+.+|+||+++++.|||+||.+++|.++++.. |  ...+++..++..|++|+++|
T Consensus       220 aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~-G--~~~~~i~~~~~~p~gi~v~~  296 (349)
T 3v64_C          220 VDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFT-G--KNQEIIRNKLHFPMDIHTLH  296 (349)
T ss_dssp             EETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTT-C--CSCEEEECSCSCCCCEEEEC
T ss_pred             EECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccC-C--CccEEeccCCCCCceEEEEc
Confidence            9999999999999999887655 568999999999999999999999999999876 3  35677777889999999999


Q ss_pred             ecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          173 IVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       173 ~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      +.+||. ..|||.. +||+|+|||++.|.       +++|+||.||. ..|+++|..
T Consensus       297 ~~~qp~-~~n~C~~-~~g~C~~lCl~~~~-------~~~C~C~~g~~-~~d~~~C~~  343 (349)
T 3v64_C          297 PQRQPA-GKNRCGD-NNGGCTHLCLPSGQ-------NYTCACPTGFR-KINSHACAL  343 (349)
T ss_dssp             GGGSCC-CCCTTTT-GGGGCSSEEECCTT-------SCEEECCTTEE-EETTTEEEE
T ss_pred             cccCcc-ccCcccC-CCCCcccEeecCCC-------CCeeECCCCCc-CCCCCcccc
Confidence            999997 7999998 89999999999886       59999999999 899999974

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=100.00  E-value=1.1e-38  Score=317.75  Aligned_cols=211  Identities=31%  Similarity=0.570  Sum_probs=187.0

Q ss_pred             EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEE
Q psy950           14 IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw   93 (407)
                      |.+..++|...++++...+..|++|||||..|+|||+|++..++|+|++|||+.+++++..++.+|+|||+|+.+++|||
T Consensus       183 I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          183 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYW  262 (400)
T ss_dssp             EEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEE
Confidence            45677788888899988999999999999999999999987679999999999999999888999999999999999999


Q ss_pred             EeCCCCeEEEEecCCCeEEEEc---cCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEE
Q psy950           94 VDAKLDLIQKISYNGGNRQIIR---RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAI  170 (407)
Q Consensus        94 ~d~~~~~I~~~~~dG~~~~~~~---~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i  170 (407)
                      +|...++|++++++|..++++.   ..+.+|+||+++++.|||+||.+++|.++++.+ |  ....++..++..|++|++
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~-G--~~~~~i~~~~~~p~~i~v  339 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT-G--SDVNLLAENLLSPEDMVL  339 (400)
T ss_dssp             EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSS-C--CCCEEEECSCSCEEEEEE
T ss_pred             EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCC-C--CceEEEecCCCCCceEEE
Confidence            9999999999999999998776   358999999999999999999999999999886 3  356777788899999999


Q ss_pred             eeecCCCCCCCCCccC--CCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          171 FDIVNQPPDENNPCFR--TGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       171 ~~~~~qp~~~~n~C~~--~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      +|+.+||. ..|||..  .+||+|+|+|++.|... ..+.+|+|+||.||.|.+|+++|..
T Consensus       340 ~~~~~qp~-~~n~c~~~~~~ng~C~~lC~~~~~~~-~~~~~~~C~C~~g~~l~~d~~~C~~  398 (400)
T 3p5b_L          340 FHNLTQPR-GVNWCERTTLSNGGCQYLCLPAPQIN-PHSPKFTCACPDGMLLARDMRSCLT  398 (400)
T ss_dssp             ESGGGSCC-CCCSSSSSSSGGGGCSSEEEECCCSS-TTCCSEEEECCTTCEECTTSSSEES
T ss_pred             EeeccCCC-CCCccccccCCCcCcCCeecCCCccc-CCCCCeeEECCCCCEECCCCCccCC
Confidence            99999997 7899962  26899999999987521 0123699999999999999999963

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=100.00  E-value=4.4e-39  Score=337.37  Aligned_cols=206  Identities=21%  Similarity=0.434  Sum_probs=187.3

Q ss_pred             EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCC-eEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEE
Q psy950           14 IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYP-RIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVY   92 (407)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~-~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lY   92 (407)
                      |.+..++|+.+++++...+.+|++|||||.+|+|||||++..+ +|+|++|||+++++|++.++.+|+|||+|+.+++||
T Consensus       413 I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LY  492 (628)
T 4a0p_A          413 INVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLF  492 (628)
T ss_dssp             EEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             EEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEE
Confidence            5677788998889998899999999999999999999998765 899999999999999998899999999999999999


Q ss_pred             EEeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEe
Q psy950           93 WVDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIF  171 (407)
Q Consensus        93 w~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~  171 (407)
                      |+|...++|+++++||++++++. ..+.+|+||++++++|||+||...+|++++|.+ |  ...+++..++..|++|.++
T Consensus       493 w~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~~~ly~tD~~~~~i~~~~k~~-G--~~~~~i~~~~~~~~~i~~~  569 (628)
T 4a0p_A          493 WADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTG-R--EGRTKVQARIAQLSDIHAV  569 (628)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEEETTEEEEEETTTTEEEEEETTS-S--SCCEEEECCCTTEEEEEEE
T ss_pred             EEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEECCEEEEEECCCCeEEEEECcC-C--CCcEEEeccCCCCcceEEE
Confidence            99999999999999999998887 678999999999999999999999999999996 3  4577788888899999999


Q ss_pred             eecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          172 DIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       172 ~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      |...|+....|||.. +||+|+|+|++.+.+      .++|.||.||.|.+|+++|.+
T Consensus       570 ~~~~~~~~~~n~c~~-~ng~C~~~C~~~~~~------~~~C~C~~g~~l~~d~~~~~~  620 (628)
T 4a0p_A          570 KELNLQEYRQHPCAQ-DNGGCSHICLVKGDG------TTRCSCPMHLVLLQDELSCGG  620 (628)
T ss_dssp             CCCCHHHHHHSTTTT-GGGGCSSEEEECTTS------CEEEECCTTEEECTTSSCEEE
T ss_pred             eecccCccccccCCC-CCCCcchhcccCCCC------CeeeeCCCCCEECCCCCcCCC
Confidence            876653336799987 899999999998764      689999999999999999974

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=100.00  E-value=5e-38  Score=311.62  Aligned_cols=202  Identities=31%  Similarity=0.569  Sum_probs=184.8

Q ss_pred             EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEE
Q psy950           14 IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw   93 (407)
                      |.+..++|+..++++..++..|.+||+||..|+|||+|++..++|+|+++||+.+++++..++.+|+|||+|+.+++|||
T Consensus       183 I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~  262 (386)
T 3v65_B          183 IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYW  262 (386)
T ss_dssp             EEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEE
T ss_pred             EEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEE
Confidence            45667788888889988999999999999999999999987569999999999999999888999999999999999999


Q ss_pred             EeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEee
Q psy950           94 VDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFD  172 (407)
Q Consensus        94 ~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~  172 (407)
                      +|...++|++++++|+.++.+. ..+.+|+||+++++.|||+||.+++|.++++.. |  ...+++..++..|++|+++|
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~-G--~~~~~i~~~~~~p~gi~v~~  339 (386)
T 3v65_B          263 VDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFT-G--KNQEIIRNKLHFPMDIHTLH  339 (386)
T ss_dssp             EETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTT-C--CSCEEEECSCSCCCCEEEES
T ss_pred             EECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCC-C--cceEEEccCCCCCceEEEEc
Confidence            9999999999999999887655 568899999999999999999999999999876 3  35677778889999999999


Q ss_pred             ecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          173 IVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       173 ~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      +.+||. ..|||.. +||+|+|||++.|.       +|+|+||.||. ..|+++|.
T Consensus       340 ~~~q~~-~~n~C~~-~ng~C~~lCl~~~~-------~~~C~C~~g~~-~~d~~~C~  385 (386)
T 3v65_B          340 PQRQPA-GKNRCGD-NNGGCTHLCLPSGQ-------NYTCACPTGFR-KINSHACA  385 (386)
T ss_dssp             GGGSCC-CCCTTTT-SCTTSSSEEECCSS-------SCEEECCTTCB-CSSSSCCB
T ss_pred             hhcCcC-CcCcccc-CCCCCCceeeeCCC-------CCeeECCCCCc-CCCCCccC
Confidence            999997 7999998 89999999999886       59999999999 89999996

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=332.30  Aligned_cols=211  Identities=31%  Similarity=0.582  Sum_probs=189.4

Q ss_pred             EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEE
Q psy950           14 IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw   93 (407)
                      |.+..++|+..++++...+..|++|||||..|+|||||++..++|+|++|||+.+++++..++.+|+|||||+.+++|||
T Consensus       495 I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYw  574 (791)
T 3m0c_C          495 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYW  574 (791)
T ss_dssp             EEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEE
Confidence            56677888999999999999999999999999999999997679999999999999999988999999999999999999


Q ss_pred             EeCCCCeEEEEecCCCeEEEEc---cCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEE
Q psy950           94 VDAKLDLIQKISYNGGNRQIIR---RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAI  170 (407)
Q Consensus        94 ~d~~~~~I~~~~~dG~~~~~~~---~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i  170 (407)
                      +|...++|++++++|..++++.   ..+.+|+||++++++|||+||.+++|+++++.+ |  ...+++..++..|++|+|
T Consensus       575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~t-G--~~~~~l~~~l~~P~~i~v  651 (791)
T 3m0c_C          575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT-G--SDVNLLAENLLSPEDMVL  651 (791)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT-C--CCCEEEECSCSCCCCEEE
T ss_pred             EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCC-C--cceEEeecCCCCceeEee
Confidence            9999999999999999998776   358899999999999999999999999999987 3  356777888999999999


Q ss_pred             eeecCCCCCCCCCccC--CCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          171 FDIVNQPPDENNPCFR--TGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       171 ~~~~~qp~~~~n~C~~--~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      ||+.+||. ..|||..  .+||+|+|||++.|...+ .+.+|+|+||.||.|.+|+++|..
T Consensus       652 ~h~~~Qp~-~~N~C~~~~~~ng~CshlCl~~p~~~~-~~~~~~C~Cp~g~~L~~d~~tC~~  710 (791)
T 3m0c_C          652 FHNLTQPR-GVNWCERTTLSNGGCQYLCLPAPQINP-HSPKFTCACPDGMLLARDMRSCLT  710 (791)
T ss_dssp             ESGGGSCC-CCCTTTSSSSGGGGCSSEEEECCCCST-TCCSEEEECCTTCEECTTSSCEEC
T ss_pred             eccccCCC-CCCcccccCCCCcCcCeeecCCCCcCC-CCCCceeECCCCCEECCCCCcCCC
Confidence            99999997 7899974  268999999999875210 123699999999999999999983

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=100.00  E-value=1.3e-34  Score=307.50  Aligned_cols=210  Identities=31%  Similarity=0.587  Sum_probs=184.2

Q ss_pred             EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEE
Q psy950           14 IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw   93 (407)
                      |.+..++|...++++...+..|++|||||..|+|||+|++..++|+|++|||+.+++++...+.+|+|||+|+.+++|||
T Consensus       477 I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~  556 (699)
T 1n7d_A          477 VSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYW  556 (699)
T ss_dssp             EEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEE
T ss_pred             EEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEE
Confidence            45556677777888887889999999999999999999986569999999999999988878899999999999999999


Q ss_pred             EeCCCCeEEEEecCCCeEEEEc---cCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEE
Q psy950           94 VDAKLDLIQKISYNGGNRQIIR---RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAI  170 (407)
Q Consensus        94 ~d~~~~~I~~~~~dG~~~~~~~---~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i  170 (407)
                      +|...++|++++++|.+++++.   ..+.+|+||+++++.|||+||..++|.++++.+ |  ...+++..++..|++|+|
T Consensus       557 aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~-G--~~~~~i~~~~~~P~~i~v  633 (699)
T 1n7d_A          557 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT-G--SDVNLLAENLLSPEDMVL  633 (699)
T ss_dssp             EETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTT-E--EEEECCCTTCSSCCCCCB
T ss_pred             EecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccC-C--CceEEeecCCCCCcEEEE
Confidence            9999999999999999988776   357899999999999999999999999999976 2  456667667889999999


Q ss_pred             eeecCCCCCCCCCccCCC---cccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          171 FDIVNQPPDENNPCFRTG---NGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       171 ~~~~~qp~~~~n~C~~~~---ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      +|+.+||. ..|||.. +   ||+|+|||+++|.... .+.+|+|+||.||.|.+|+++|..
T Consensus       634 ~~~~~qp~-~~n~C~~-~~~~ng~Cs~lCl~~p~~~~-~~~~~~C~Cp~g~~l~~d~~~C~~  692 (699)
T 1n7d_A          634 FHQLTQPR-GVNWCER-TTLSNGGCQYLCLPAPQINP-HSPKFTCACPDGMLLARDMRSCLT  692 (699)
T ss_dssp             CSSSSSCC-SCCSSCS-SSCSSCSCTTCCBCCCCCTT-CSCSCBCCCCSSCEECSSTTCEEC
T ss_pred             eCcccCCC-CCCCccc-cCCCCCCCCcccCcCcccCC-CCCCcEEECcCCCEECCCCCccCC
Confidence            99999997 7899997 6   8999999998874211 123699999999999999999974

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.98  E-value=1.4e-31  Score=261.66  Aligned_cols=195  Identities=16%  Similarity=0.282  Sum_probs=154.8

Q ss_pred             CCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc--ccceeeeeecccceEEeecCCCCCeeeeEee
Q psy950          182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT--TMDEYLVFSTRTEIRALHLDPTLTAVPFKTV  259 (407)
Q Consensus       182 n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~--~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~  259 (407)
                      |+|.  ++++|+|+|++.++       +|+|.|+.||.|.+|+++|.  .++++|+|+.+..|+++.++.....   ..+
T Consensus         2 ~ec~--~~~~C~~~C~n~~g-------~~~C~C~~g~~l~~d~~~C~~~~~~~~ll~~~~~~I~~i~~~g~~~~---~~~   69 (349)
T 3v64_C            2 NECA--EEGYCSQGCTNSEG-------AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYT---LLL   69 (349)
T ss_dssp             ---------CCSSEECCC----------CCEECCTTEEECTTSSCEEESSSCCEEEEECBSCEEEECTTSCCEE---EEE
T ss_pred             cccC--CCCCCcCeeecCCC-------CeEEECCCCccCCCCCCcccccccCceeEeecccceEEEeCCCCeeE---Eee
Confidence            6897  47999999999987       59999999999999999998  4678999999999999998765432   245


Q ss_pred             cCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECC
Q psy950          260 SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTT  335 (407)
Q Consensus       260 ~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~  335 (407)
                      ..+.++.++++|+.+++|||+|... ++|+++++++.....    ++. .|.|||+||.+++|||+|... ++|++++++
T Consensus        70 ~~~~~~~~l~~d~~~~~ly~~D~~~-~~I~r~~~~g~~~~~~~~~~~~-~p~glavd~~~g~ly~~d~~~-~~I~~~~~d  146 (349)
T 3v64_C           70 NNLENAIALDFHHRRELVFWSDVTL-DRILRANLNGSNVEEVVSTGLE-SPGGLAVDWVHDKLYWTDSGT-SRIEVANLD  146 (349)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTT-TEEEEEETTSCSCEEEECSSCS-CCCEEEEETTTTEEEEEETTT-TEEEEEETT
T ss_pred             cCCCceEEEEEeccccEEEEEeccC-CceEEEecCCCCceEEEeCCCC-CccEEEEecCCCeEEEEcCCC-CeEEEEcCC
Confidence            6778899999999999999999998 899999999875432    556 899999999999999999999 899999999


Q ss_pred             CCcc--cc-cCCCceeEEEEcCCCCeEEEEeCCCCCcccccCCCCCCCcceeEEEeCCCccc
Q psy950          336 NPSS--AS-SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILSRGKDEK  394 (407)
Q Consensus       336 ~~~r--l~-~~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg~~~~~~~~~~l~~~~~~~~  394 (407)
                      |..+  +. ..+..|++|||||..|+|||+||+..++|   ...+++|+.++.+...+..+|
T Consensus       147 G~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I---~r~~~dG~~~~~~~~~~~~~P  205 (349)
T 3v64_C          147 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI---EASSMDGSGRRIIADTHLFWP  205 (349)
T ss_dssp             SCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEE---EEEETTSCSCEESCCSSCSCE
T ss_pred             CCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEE---EEEeCCCCCcEEEEECCCCCc
Confidence            9864  33 57899999999999999999999887777   223444555555544444444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.97  E-value=1.2e-29  Score=252.63  Aligned_cols=199  Identities=20%  Similarity=0.320  Sum_probs=163.1

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc--ccceeeeeecccceEEeecCCCCCeeeeE
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT--TMDEYLVFSTRTEIRALHLDPTLTAVPFK  257 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~--~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~  257 (407)
                      ..++|..  .+.|+|.|.+.++       +|+|.|+.||.+.+++++|.  .+++||+|+.+..|+++.++......   
T Consensus        39 dideC~~--~~~C~~~C~n~~g-------~~~C~C~~g~~~~~~~~~C~~~~~~~~ll~~~~~~I~~i~l~~~~~~~---  106 (400)
T 3p5b_L           39 DIDECQD--PDTCSQLCVNLEG-------GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTS---  106 (400)
T ss_dssp             ECCCCST--TSSCSSCCBCCSS-------SCBCCCCTTCCCCTTTSSCCCSTTSCEEEEEETTEEEEECTTSCSCEE---
T ss_pred             Cchhhhc--cCCCCCccCCCcc-------ceeeeccccccccccccceeeccccceeEEeccceeEEEccCCcceeE---
Confidence            5689974  5789999999877       59999999999999999998  46789999999999999998765443   


Q ss_pred             eecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCc----ccc----cCCCCccEEEEeccCCeEEEEeCCCCCeE
Q psy950          258 TVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS----SAS----SNLTNVVGVEFDYADDKILFTQIRPWAKI  329 (407)
Q Consensus       258 ~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~----~~~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I  329 (407)
                      .+..+.++.||+||+.+++|||+|... .+|+++.+++..    ...    ++. .|.||||||++++|||+|... ++|
T Consensus       107 ~~~~~~~~~~l~~d~~~~~lywsD~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~-~p~glavD~~~~~lY~~d~~~-~~I  183 (400)
T 3p5b_L          107 LIPNLRNVVALDTEVASNRIYWSDLSQ-RMICSTQLDRAHGVSSYDTVISRDIQ-APDGLAVDWIHSNIYWTDSVL-GTV  183 (400)
T ss_dssp             EECSCSCEEEEEEETTTTEEEEEETTT-TEEEEEEC------CCCEEEECSSCS-CEEEEEEETTTTEEEEEETTT-TEE
T ss_pred             eccccCcceEEeeeeccCceEEEecCC-CeEEEEEcccCCCCCcceEEEeCCCC-CcccEEEEecCCceEEEECCC-CeE
Confidence            346778899999999999999999998 899999998732    211    556 899999999999999999999 899


Q ss_pred             EEEECCCCcc--c-ccCCCceeEEEEcCCCCeEEEEeCCCCCcccccCCCCCCCcceeEEEeCCCcccee
Q psy950          330 AWIPTTNPSS--A-SSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILSRGKDEKAK  396 (407)
Q Consensus       330 ~v~~~~~~~r--l-~~~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg~~~~~~~~~~l~~~~~~~~~~  396 (407)
                      ++++++|..+  + ...+..|++|||||..|+|||+||+..++|   ...+++|+.++.|...+..+|.-
T Consensus       184 ~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I---~~~~~dG~~~~~~~~~~l~~P~g  250 (400)
T 3p5b_L          184 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI---KKGGLNGVDIYSLVTENIQWPNG  250 (400)
T ss_dssp             EEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCE---EEEETTSCSCEEEECSSCSCEEE
T ss_pred             EEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEE---EEEeCCCCccEEEEECCCCceEE
Confidence            9999999864  3 358899999999999999999999887777   23345566666666555555543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.96  E-value=5.7e-28  Score=233.15  Aligned_cols=240  Identities=18%  Similarity=0.281  Sum_probs=193.7

Q ss_pred             CccEEEEEEeeeeecC----Cc-ceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCe-EEEEeCCCCCc
Q psy950            6 ALASLIWAIRLALRLL----KK-KKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKW-TSIVSNGISMP   79 (407)
Q Consensus         6 ~~~~~~~s~~~~~~~~----~~-~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~-~~l~~~~~~~P   79 (407)
                      ++|+||||.+..++..    .. ...++..++..|.+|++|+..+.|||+|.... +|.|++++|+.. +.++..++..|
T Consensus         3 ~~p~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~-~I~r~~~~g~~~~~~~~~~~l~~p   81 (318)
T 3sov_A            3 SAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE-AIKRTEFNKTESVQNVVVSGLLSP   81 (318)
T ss_dssp             -CCEEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTT-EEEEEETTSSSCCCEEEEECCSCC
T ss_pred             CccEEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCC-cEEEEEccCCCceEEEEcCCCCCc
Confidence            6899999998766544    22 34566667888999999999999999999875 999999999863 45666678899


Q ss_pred             eeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEeC--CEEEEEeCC-CCeEEEEecCCCCCCccc
Q psy950           80 RDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVHK--SDVYWVDRN-LRTVYKASKLASTNITLP  155 (407)
Q Consensus        80 ~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~--~~lYwtd~~-~~~I~~~~~~~~g~~~~~  155 (407)
                      .|||+|+.+++|||+|...++|++++++|..++++. ..+..|.||+++.  +.|||+||. ..+|+++++++  .  ..
T Consensus        82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG--~--~~  157 (318)
T 3sov_A           82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG--S--SR  157 (318)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS--C--SC
T ss_pred             cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC--C--Ce
Confidence            999999999999999999999999999999887766 7789999999984  899999986 56888888775  1  11


Q ss_pred             EEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeee
Q psy950          156 TPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLV  235 (407)
Q Consensus       156 ~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll  235 (407)
                      +++..                                                                           
T Consensus       158 ~~~~~---------------------------------------------------------------------------  162 (318)
T 3sov_A          158 FIIIN---------------------------------------------------------------------------  162 (318)
T ss_dssp             EEEEC---------------------------------------------------------------------------
T ss_pred             EEEEE---------------------------------------------------------------------------
Confidence            11100                                                                           


Q ss_pred             eecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEE
Q psy950          236 FSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEF  311 (407)
Q Consensus       236 ~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAv  311 (407)
                                              ..+..+.+|++|+.+++|||+|... .+|.+++++|.....    .+. .|.|||+
T Consensus       163 ------------------------~~l~~Pnglavd~~~~~lY~aD~~~-~~I~~~d~dG~~~~~~~~~~~~-~P~glav  216 (318)
T 3sov_A          163 ------------------------SEIYWPNGLTLDYEEQKLYWADAKL-NFIHKSNLDGTNRQAVVKGSLP-HPFALTL  216 (318)
T ss_dssp             ------------------------SSCSCEEEEEEETTTTEEEEEETTT-TEEEEEETTSCSCEEEECSCCS-CEEEEEE
T ss_pred             ------------------------CCCCCccEEEEeccCCEEEEEECCC-CEEEEEcCCCCceEEEecCCCC-CceEEEE
Confidence                                    0012245788999999999999988 899999999876543    455 9999999


Q ss_pred             eccCCeEEEEeCCCCCeEEEEECC-CCc-c-cccCCCceeEEEEcC
Q psy950          312 DYADDKILFTQIRPWAKIAWIPTT-NPS-S-ASSNLTNVVGVEFDY  354 (407)
Q Consensus       312 Dwi~~~LYwtd~~~~~~I~v~~~~-~~~-r-l~~~l~~P~~iavdp  354 (407)
                      |  .+.|||+|... ++|.+++.. |.. + +...+.+|.+|+|.-
T Consensus       217 ~--~~~lywtd~~~-~~V~~~~~~~G~~~~~i~~~~~~P~~i~v~~  259 (318)
T 3sov_A          217 F--EDILYWTDWST-HSILACNKYTGEGLREIHSDIFSPMDIHAFS  259 (318)
T ss_dssp             E--TTEEEEEETTT-TEEEEEETTTCCSCEEEECCCSSCCCEEEEC
T ss_pred             e--CCEEEEEecCC-CeEEEEECCCCCceEEEeCCCCCCcEEEEec
Confidence            8  78999999999 899999984 543 2 556789999999843

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.96  E-value=7.4e-28  Score=238.49  Aligned_cols=251  Identities=19%  Similarity=0.282  Sum_probs=201.1

Q ss_pred             CCccEEEEEEeeeeecCC---cceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCcee
Q psy950            5 LALASLIWAIRLALRLLK---KKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRD   81 (407)
Q Consensus         5 ~~~~~~~~s~~~~~~~~~---~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~g   81 (407)
                      .++|+|+|+.+..++...   .....+...+..|.+|++|+..++|||+|.... +|.|.+++|+..+.++..++..|.|
T Consensus        85 ~~~~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~-~I~r~~~~g~~~~~~~~~~~~~p~g  163 (386)
T 3v65_B           85 GPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLD-RILRANLNGSNVEEVVSTGLESPGG  163 (386)
T ss_dssp             SSCCEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTT-EEEEEETTSCCEEEEECSSCSCCCC
T ss_pred             cccceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCC-cEEEEecCCCCcEEEEeCCCCCccE
Confidence            357899999776544332   233445567889999999999999999999865 9999999999998888888889999


Q ss_pred             EEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEe--CCEEEEEeCCC-CeEEEEecCCCCCCcccEE
Q psy950           82 LTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVH--KSDVYWVDRNL-RTVYKASKLASTNITLPTP  157 (407)
Q Consensus        82 laiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~--~~~lYwtd~~~-~~I~~~~~~~~g~~~~~~~  157 (407)
                      ||+|+.+++|||+|...++|++++++|..++++. ..+..|.||+++  ++.|||+||.. ++|++++.++  .  ..++
T Consensus       164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG--~--~~~~  239 (386)
T 3v65_B          164 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG--S--GRRI  239 (386)
T ss_dssp             EEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--C--SCEE
T ss_pred             EEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC--C--CcEE
Confidence            9999999999999999999999999999887665 578999999998  48999999988 7899988775  1  1111


Q ss_pred             cccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeee
Q psy950          158 IRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFS  237 (407)
Q Consensus       158 i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s  237 (407)
                      +..                                                                             
T Consensus       240 ~~~-----------------------------------------------------------------------------  242 (386)
T 3v65_B          240 IAD-----------------------------------------------------------------------------  242 (386)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             EEE-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             cccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEEec
Q psy950          238 TRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEFDY  313 (407)
Q Consensus       238 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAvDw  313 (407)
                                            ..+..+.+|++|+.+++|||+|... .+|.+++++|.....    ++. .|.|||+| 
T Consensus       243 ----------------------~~~~~PnGlavd~~~~~lY~aD~~~-~~I~~~d~dG~~~~~~~~~~~~-~P~giav~-  297 (386)
T 3v65_B          243 ----------------------THLFWPNGLTIDYAGRRMYWVDAKH-HVIERANLDGSHRKAVISQGLP-HPFAITVF-  297 (386)
T ss_dssp             ----------------------SSCSCEEEEEEEGGGTEEEEEETTT-TEEEEECTTSCSCEEEECSSCS-SEEEEEEE-
T ss_pred             ----------------------CCCCCeeeEEEeCCCCEEEEEECCC-CEEEEEeCCCCeeEEEEECCCC-CceEEEEE-
Confidence                                  0012245788999999999999998 899999999876443    566 99999996 


Q ss_pred             cCCeEEEEeCCCCCeEEEEE-CCCCcc--cccCCCceeEEEEcCCCCeEEEEeC
Q psy950          314 ADDKILFTQIRPWAKIAWIP-TTNPSS--ASSNLTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       314 i~~~LYwtd~~~~~~I~v~~-~~~~~r--l~~~l~~P~~iavdp~~g~lywtd~  364 (407)
                       .++|||+|... ++|.+++ .+|..+  +...+.+|.+|++....+..+.+++
T Consensus       298 -~~~ly~td~~~-~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~q~~~~n~  349 (386)
T 3v65_B          298 -EDSLYWTDWHT-KSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNR  349 (386)
T ss_dssp             -TTEEEEEETTT-TEEEEEETTTCCSCEEEECSCSCCCCEEEESGGGSCCCCCT
T ss_pred             -CCEEEEeeCCC-CeEEEEECCCCcceEEEccCCCCCceEEEEchhcCcCCcCc
Confidence             78999999999 8999998 566543  5568899999999765544443443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.96  E-value=7.3e-27  Score=225.07  Aligned_cols=240  Identities=18%  Similarity=0.258  Sum_probs=187.9

Q ss_pred             ccEEEEEEeeeeecCC---cceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCC----CCeEEEEeCCCCCc
Q psy950            7 LASLIWAIRLALRLLK---KKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDG----SKWTSIVSNGISMP   79 (407)
Q Consensus         7 ~~~~~~s~~~~~~~~~---~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG----~~~~~l~~~~~~~P   79 (407)
                      ||+||||.+..++...   .....+...+.+|.++++|+..++|||+|.... +|.|.+++|    +..+.++..++..|
T Consensus         1 ~~~ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~-~I~~~~~~g~~~~~~~~~~~~~~~~~p   79 (316)
T 1ijq_A            1 IAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR-MICSTQLDRAHGVSSYDTVISRDIQAP   79 (316)
T ss_dssp             CCEEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTT-EEEEEEC--------CEEEECSSCSCC
T ss_pred             CCEEEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCC-cEEEEECCCCCCCcccEEEEeCCCCCc
Confidence            7999999986654432   122334456889999999999999999999865 999999998    66677776677899


Q ss_pred             eeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEeC--CEEEEEeCCC-CeEEEEecCCCCCCccc
Q psy950           80 RDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVHK--SDVYWVDRNL-RTVYKASKLASTNITLP  155 (407)
Q Consensus        80 ~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~--~~lYwtd~~~-~~I~~~~~~~~g~~~~~  155 (407)
                      .|||+|+.+++|||+|...++|++++++|..++++. ..+..|.+|+++.  +.|||+|+.. ++|++++.++  .  ..
T Consensus        80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG--~--~~  155 (316)
T 1ijq_A           80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--V--DI  155 (316)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--C--CE
T ss_pred             CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC--C--Ce
Confidence            999999999999999999999999999999887665 4788999999984  8999999986 6888888765  1  11


Q ss_pred             EEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeee
Q psy950          156 TPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLV  235 (407)
Q Consensus       156 ~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll  235 (407)
                      +++.            .                                                               
T Consensus       156 ~~~~------------~---------------------------------------------------------------  160 (316)
T 1ijq_A          156 YSLV------------T---------------------------------------------------------------  160 (316)
T ss_dssp             EEEE------------C---------------------------------------------------------------
T ss_pred             EEEE------------E---------------------------------------------------------------
Confidence            1110            0                                                               


Q ss_pred             eecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc------cCCCCccEE
Q psy950          236 FSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS------SNLTNVVGV  309 (407)
Q Consensus       236 ~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~------~~~~~~~gl  309 (407)
                                              ..+..+.+|++|+.+++|||+|... .+|.+++++|.....      .+. .|.||
T Consensus       161 ------------------------~~~~~P~gla~d~~~~~lY~~D~~~-~~I~~~d~dg~~~~~~~~~~~~~~-~P~gi  214 (316)
T 1ijq_A          161 ------------------------ENIQWPNGITLDLLSGRLYWVDSKL-HSISSIDVNGGNRKTILEDEKRLA-HPFSL  214 (316)
T ss_dssp             ------------------------SSCSCEEEEEEETTTTEEEEEETTT-TEEEEEETTSCSCEEEEECTTTTS-SEEEE
T ss_pred             ------------------------CCCCCceEEEEeccCCEEEEEECCC-CeEEEEecCCCceEEEeecCCccC-CcEEE
Confidence                                    0112346788999999999999988 899999999865443      245 89999


Q ss_pred             EEeccCCeEEEEeCCCCCeEEEEEC-CCCcc--cccCCCceeEEEEcCC
Q psy950          310 EFDYADDKILFTQIRPWAKIAWIPT-TNPSS--ASSNLTNVVGVEFDYA  355 (407)
Q Consensus       310 AvDwi~~~LYwtd~~~~~~I~v~~~-~~~~r--l~~~l~~P~~iavdp~  355 (407)
                      |+|  .++|||+|... ++|.+++. +|...  +..++..|.+|+++..
T Consensus       215 av~--~~~ly~~d~~~-~~V~~~~~~~g~~~~~i~~~~~~p~~i~v~~~  260 (316)
T 1ijq_A          215 AVF--EDKVFWTDIIN-EAIFSANRLTGSDVNLLAENLLSPEDMVLFHN  260 (316)
T ss_dssp             EEE--TTEEEEEETTT-TEEEEEETTTCCCCEEEECSCSCCCCEEEESG
T ss_pred             EEE--CCEEEEEECCC-CeEEEEeCCCCcceEEEecCCCCceEEEEecc
Confidence            998  69999999999 89999997 45432  5567889999988743

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.96  E-value=2.9e-28  Score=260.61  Aligned_cols=200  Identities=20%  Similarity=0.315  Sum_probs=162.1

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc--ccceeeeeecccceEEeecCCCCCeeeeE
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT--TMDEYLVFSTRTEIRALHLDPTLTAVPFK  257 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~--~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~  257 (407)
                      ..++|..  ++.|+|+|++.++       +|+|.|+.||.|.+++++|+  +..++|+|+++..|+++.++...+..   
T Consensus       351 dideC~~--~~~C~~~C~n~~g-------sy~C~C~~Gy~l~~~~~~C~~~~~~p~Ll~an~~~Ir~i~l~~~~~~~---  418 (791)
T 3m0c_C          351 DIDECQD--PDTCSQLCVNLEG-------GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTS---  418 (791)
T ss_dssp             CCCCCSS--SSSCTTTCCBCSS-------CBCCCCCSSEECCSSCCCCEETTSCCEEEEECBSSEEEECTTSCCCEE---
T ss_pred             cCcccCC--CCCCCCeeecCCC-------CceeecCCCCEeCCCCceeeecccccccccccccceeEeeccCCccee---
Confidence            3567753  5677777777765       69999999999999999998  45679999999999999998765433   


Q ss_pred             eecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCc----cc--c--cCCCCccEEEEeccCCeEEEEeCCCCCeE
Q psy950          258 TVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS----SA--S--SNLTNVVGVEFDYADDKILFTQIRPWAKI  329 (407)
Q Consensus       258 ~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~----~~--~--~~~~~~~glAvDwi~~~LYwtd~~~~~~I  329 (407)
                      .+..+..+.||+||+.+++|||+|... .+|+++.+++..    ..  .  ++. .|.||||||++++|||+|... ++|
T Consensus       419 l~~~~~~~~gl~~d~~~~~lY~sD~~~-~~I~~~~l~g~~~~~~~~~vi~~~l~-~P~GLAvD~~~~~LY~tD~~~-~~I  495 (791)
T 3m0c_C          419 LIPNLRNVVALDTEVASNRIYWSDLSQ-RMICSTQLDRAHGVSSYDTVISRDIQ-APDGLAVDWIHSNIYWTDSVL-GTV  495 (791)
T ss_dssp             EECSCSSEEEEEEETTTTEEEEEETTT-TEEEEEEC--------CEEEECSSCS-CCCEEEEETTTTEEEEEETTT-TEE
T ss_pred             eecCCCceEEEeecccCCeeEEeeccc-eeEEEEeccCCCCCcceeEEEecCCC-CcceeeeeecCCcEEEEecCC-CeE
Confidence            345678899999999999999999998 899999998742    11  1  556 999999999999999999999 899


Q ss_pred             EEEECCCCcc--cc-cCCCceeEEEEcCCCCeEEEEeCCCCCcccccCCCCCCCcceeEEEeCCCccceee
Q psy950          330 AWIPTTNPSS--AS-SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILSRGKDEKAKI  397 (407)
Q Consensus       330 ~v~~~~~~~r--l~-~~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg~~~~~~~~~~l~~~~~~~~~~~  397 (407)
                      ++++++|..+  +. ..+..|+||||||.+|+||||||+..++|   ...+|+|+.++.|...++.+|..|
T Consensus       496 ~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I---~~~~~dG~~~~~lv~~~l~~P~GL  563 (791)
T 3m0c_C          496 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI---KKGGLNGVDIYSLVTENIQWPNGI  563 (791)
T ss_dssp             EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE---EEEETTSCCEEEEECSSCSCEEEE
T ss_pred             EEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeE---EEEecCCCceEEEEeCCCCCceEE
Confidence            9999999865  33 58899999999999999999999987877   234556677777777676666554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.93  E-value=5.6e-23  Score=192.16  Aligned_cols=241  Identities=17%  Similarity=0.303  Sum_probs=184.7

Q ss_pred             ccEEEEEEe----eeeecCCcce-----EEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCC
Q psy950            7 LASLIWAIR----LALRLLKKKK-----KLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGIS   77 (407)
Q Consensus         7 ~~~~~~s~~----~~~~~~~~~~-----~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~   77 (407)
                      +|+|+||..    +..++++..+     .++.....+|.++++|+..++|||+|.... +|.+.+++|...+.++..++.
T Consensus         1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~-~I~~~~~~g~~~~~~~~~~~~   79 (267)
T 1npe_A            1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEP-SIGRASLHGGEPTTIIRQDLG   79 (267)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTT-EEEEEESSSCCCEEEECTTCC
T ss_pred             CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCC-EEEEEecCCCCcEEEEECCCC
Confidence            578999654    3444554322     234434567999999999999999999865 999999999988887776778


Q ss_pred             CceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEeC--CEEEEEeCC--CCeEEEEecCCCCCC
Q psy950           78 MPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVHK--SDVYWVDRN--LRTVYKASKLASTNI  152 (407)
Q Consensus        78 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~--~~lYwtd~~--~~~I~~~~~~~~g~~  152 (407)
                      .|.+|++|+.+++|||+|...++|.+++++|..++.+. ..+..|.+|+++.  +.|||+++.  .++|++++.++  . 
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg--~-  156 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--T-  156 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS--C-
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC--C-
Confidence            99999999999999999999999999999998776655 4568999999984  899999986  45666666543  0 


Q ss_pred             cccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccce
Q psy950          153 TLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDE  232 (407)
Q Consensus       153 ~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~  232 (407)
                       ..+++.                                                                         
T Consensus       157 -~~~~~~-------------------------------------------------------------------------  162 (267)
T 1npe_A          157 -NRRILA-------------------------------------------------------------------------  162 (267)
T ss_dssp             -CCEEEE-------------------------------------------------------------------------
T ss_pred             -CcEEEE-------------------------------------------------------------------------
Confidence             000000                                                                         


Q ss_pred             eeeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc---cCCCCccEE
Q psy950          233 YLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS---SNLTNVVGV  309 (407)
Q Consensus       233 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~---~~~~~~~gl  309 (407)
                                      .          ..+..+.++++|+.+++|||+|... ++|.+++.++.....   ... .|.||
T Consensus       163 ----------------~----------~~~~~P~gia~d~~~~~lyv~d~~~-~~I~~~~~~g~~~~~~~~~~~-~P~gi  214 (267)
T 1npe_A          163 ----------------Q----------DNLGLPNGLTFDAFSSQLCWVDAGT-HRAECLNPAQPGRRKVLEGLQ-YPFAV  214 (267)
T ss_dssp             ----------------C----------TTCSCEEEEEEETTTTEEEEEETTT-TEEEEEETTEEEEEEEEECCC-SEEEE
T ss_pred             ----------------E----------CCCCCCcEEEEcCCCCEEEEEECCC-CEEEEEecCCCceEEEecCCC-CceEE
Confidence                            0          0112356788898899999999998 899999998764433   445 89999


Q ss_pred             EEeccCCeEEEEeCCCCCeEEEEECCCCcc---cccC-CCceeEEEEcCCC
Q psy950          310 EFDYADDKILFTQIRPWAKIAWIPTTNPSS---ASSN-LTNVVGVEFDYAD  356 (407)
Q Consensus       310 AvDwi~~~LYwtd~~~~~~I~v~~~~~~~r---l~~~-l~~P~~iavdp~~  356 (407)
                      ++|  .++|||++... ++|.+++.++...   +... ...|.||++.|..
T Consensus       215 ~~d--~~~lyva~~~~-~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          215 TSY--GKNLYYTDWKT-NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             EEE--TTEEEEEETTT-TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             EEe--CCEEEEEECCC-CeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence            998  79999999998 8999999976542   3322 3479999998864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.92  E-value=2.2e-25  Score=236.56  Aligned_cols=197  Identities=20%  Similarity=0.320  Sum_probs=155.1

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc--ccceeeeeecccceEEeecCCCCCeeeeE
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT--TMDEYLVFSTRTEIRALHLDPTLTAVPFK  257 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~--~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~  257 (407)
                      ..++|..  ++.|+|+|++.++       +|+|.|+.||.+.+++++|.  .+.++|+|+++..|+.+.+.......   
T Consensus       333 dideC~~--~~~C~~~C~n~~g-------~y~C~C~~G~~~~~~~~~C~~~~~~~~ll~~~~~~I~~id~~~~~~~~---  400 (699)
T 1n7d_A          333 DIDECQD--PDTCSQLCVNLEG-------GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTS---  400 (699)
T ss_dssp             CCCCCSS--SSSCTTTCCBCSS-------CBCCCCCSSCBCCSSCCCCBCCSSCCCBCCCCTTC-CEECTTSCCEEC---
T ss_pred             CccccCC--CCccccccccCCC-------CeeeeeecccccCCCCCcccccccceeEEecCccceEEEeCCCCccee---
Confidence            5678863  5789999998876       59999999999999999998  46789999999999999887654322   


Q ss_pred             eecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCC----Ccccc----cCCCCccEEEEeccCCeEEEEeCCCCCeE
Q psy950          258 TVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTN----PSSAS----SNLTNVVGVEFDYADDKILFTQIRPWAKI  329 (407)
Q Consensus       258 ~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~----~~~~~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I  329 (407)
                      .+..+.++.+|+||+.+++|||+|... .+|+++++++    .....    ++. .|.||||||.+++|||+|... ++|
T Consensus       401 ~~~~~~~p~gla~d~~~~~Ly~sD~~~-~~I~~~~~~g~~~~~~~~~~i~~~~~-~P~glavD~~~g~LY~tD~~~-~~I  477 (699)
T 1n7d_A          401 LIPNLRNVVALDTEVASNRIYWSDLSQ-RMICSTQLDRAHGVSSYDTVISRDIQ-APDGLAVDWIHSNIYWTDSVL-GTV  477 (699)
T ss_dssp             CSCCCTTCCCCEEETTTTEEEECCTTT-TSBEEEESCCCCC-CCCCCBCCSCC---CCCEECCCSSSBCEECCTTT-SCE
T ss_pred             eeccCcceEEEccccccCeEEEEecCC-CeEEEEecCCCCCCcceEEEEeCCCC-CcceEEEEeeCCcEEEEeccC-CeE
Confidence            244567889999999999999999998 8899999986    22222    445 899999999999999999998 899


Q ss_pred             EEEECCCCcc--cc-cCCCceeEEEEcCCCCeEEEEeCCCCCcccccCCCCCCCcceeEEEeCCCccc
Q psy950          330 AWIPTTNPSS--AS-SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILSRGKDEK  394 (407)
Q Consensus       330 ~v~~~~~~~r--l~-~~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg~~~~~~~~~~l~~~~~~~~  394 (407)
                      .+++++|..+  +. ..+..|++|||||..|+|||+||+..++|   ...+++|+.++.|...++.+|
T Consensus       478 ~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I---~~~~~dG~~~~~l~~~~l~~P  542 (699)
T 1n7d_A          478 SVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKI---KKGGLNGVDIYSLVTENIQWP  542 (699)
T ss_dssp             EEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCE---EBCCSSSCCCCEESCSSCSSC
T ss_pred             EEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeE---EEEeCCCCCeeEEEeCCCCCc
Confidence            9999998764  33 47899999999999999999999876777   233445555554443333333

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.88  E-value=1.7e-20  Score=175.18  Aligned_cols=230  Identities=17%  Similarity=0.248  Sum_probs=174.7

Q ss_pred             CEEEEEEcCCCCeEEEEeCCCCCeE-----EEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc-cCC
Q psy950           45 RLLYWIDYGQYPRIGKSYLDGSKWT-----SIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR-RNL  118 (407)
Q Consensus        45 g~lywtd~~~~~~I~r~~~dG~~~~-----~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-~~~  118 (407)
                      .+|||++.   .+|.|.+++|...+     .++......|.|+++|+.+++|||+|...++|.+++++|.....+. ..+
T Consensus         2 ~~l~~~~~---~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~   78 (267)
T 1npe_A            2 THLLFAQT---GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (267)
T ss_dssp             EEEEEEEE---EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             cEEEEEcC---CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence            47899985   38999999998642     3444334579999999999999999999999999999998765544 556


Q ss_pred             CCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccc
Q psy950          119 PNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLC  196 (407)
Q Consensus       119 ~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC  196 (407)
                      ..|.+|+++.  +.|||+|...++|.+++.++  .  ....+.                                     
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g--~--~~~~~~-------------------------------------  117 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--T--QRRVLF-------------------------------------  117 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTS--C--SCEEEE-------------------------------------
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCC--C--CEEEEE-------------------------------------
Confidence            8999999984  79999999888888877654  1  000000                                     


Q ss_pred             eecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCE
Q psy950          197 FSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDK  276 (407)
Q Consensus       197 ~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~  276 (407)
                                                                          .          ..+..+.++++|+.+++
T Consensus       118 ----------------------------------------------------~----------~~~~~P~~i~vd~~~g~  135 (267)
T 1npe_A          118 ----------------------------------------------------D----------TGLVNPRGIVTDPVRGN  135 (267)
T ss_dssp             ----------------------------------------------------C----------SSCSSEEEEEEETTTTE
T ss_pred             ----------------------------------------------------E----------CCCCCccEEEEeeCCCE
Confidence                                                                0          00112457888998999


Q ss_pred             EEEEEec--CCceEEEEeCCCCcccc----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc--cccCCCcee
Q psy950          277 ILFTQIR--PWAKIAWIPTTNPSSAS----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS--ASSNLTNVV  348 (407)
Q Consensus       277 lywsd~~--~~~~I~~~~~~~~~~~~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r--l~~~l~~P~  348 (407)
                      |||++..  . ++|+++.+++.....    .+. .|.|||+|..+++|||+|... ++|.++++++..+  +...+..|.
T Consensus       136 lyv~~~~~~~-~~I~~~~~dg~~~~~~~~~~~~-~P~gia~d~~~~~lyv~d~~~-~~I~~~~~~g~~~~~~~~~~~~P~  212 (267)
T 1npe_A          136 LYWTDWNRDN-PKIETSHMDGTNRRILAQDNLG-LPNGLTFDAFSSQLCWVDAGT-HRAECLNPAQPGRRKVLEGLQYPF  212 (267)
T ss_dssp             EEEEECCSSS-CEEEEEETTSCCCEEEECTTCS-CEEEEEEETTTTEEEEEETTT-TEEEEEETTEEEEEEEEECCCSEE
T ss_pred             EEEEECCCCC-cEEEEEecCCCCcEEEEECCCC-CCcEEEEcCCCCEEEEEECCC-CEEEEEecCCCceEEEecCCCCce
Confidence            9999976  4 689999998865432    455 899999999999999999999 8999999998654  446778999


Q ss_pred             EEEEcCCCCeEEEEeCCCCCcccccCCCCCC-CcceeEEEeC
Q psy950          349 GVEFDYADDKILFTQIRPWAKIAWIPTTNPS-SASVNTILSR  389 (407)
Q Consensus       349 ~iavdp~~g~lywtd~~~~~~ia~~dg~~~~-~~~~~~l~~~  389 (407)
                      ||++|  .++|||+||+... |.   ..+++ |..+++|...
T Consensus       213 gi~~d--~~~lyva~~~~~~-v~---~~d~~~g~~~~~i~~g  248 (267)
T 1npe_A          213 AVTSY--GKNLYYTDWKTNS-VI---AMDLAISKEMDTFHPH  248 (267)
T ss_dssp             EEEEE--TTEEEEEETTTTE-EE---EEETTTTEEEEEECCS
T ss_pred             EEEEe--CCEEEEEECCCCe-EE---EEeCCCCCceEEEccc
Confidence            99998  6999999996543 42   23454 4455555443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=1.4e-16  Score=159.60  Aligned_cols=228  Identities=11%  Similarity=0.109  Sum_probs=163.9

Q ss_pred             CCCCcceEEEeC-CCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCC----eEEEEe
Q psy950           31 FRSANTTSPFSP-LPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD----LIQKIS  105 (407)
Q Consensus        31 ~~~~P~~iavdp-~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~----~I~~~~  105 (407)
                      .+.+|.+||+|| ..+.||++|..  .+|.+.++++...+.+.. ....|.+|++|+.+++|||+|...+    .+..++
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~--~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~  211 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQ--HPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT  211 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBT--EEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCC--CcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence            477999999999 58999999987  499999999987777665 6678999999999889999998543    466677


Q ss_pred             cCCCeE--EEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCC
Q psy950          106 YNGGNR--QIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDEN  181 (407)
Q Consensus       106 ~dG~~~--~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~  181 (407)
                      .+|...  +.+ ..+.+|.+++++.  +.||++|+..++|++++..+ +   ....+            .   ..+    
T Consensus       212 ~~g~~~~~~~l-~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~-~---~~~~~------------~---~~~----  267 (430)
T 3tc9_A          212 RESGFKVITEL-TKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTT-Q---ETTPL------------F---TIQ----  267 (430)
T ss_dssp             GGGTSCSEEEE-EECSSCCCEEECTTTCCEEEEETTTTEEEEEETTT-T---EEEEE------------E---ECS----
T ss_pred             CCCceeeeeee-ccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC-C---cEEEE------------E---EcC----
Confidence            777554  333 3588999999986  89999999999999988764 1   11000            0   000    


Q ss_pred             CCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecC
Q psy950          182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSN  261 (407)
Q Consensus       182 n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~  261 (407)
                                                                                                     .
T Consensus       268 -------------------------------------------------------------------------------~  268 (430)
T 3tc9_A          268 -------------------------------------------------------------------------------D  268 (430)
T ss_dssp             -------------------------------------------------------------------------------S
T ss_pred             -------------------------------------------------------------------------------C
Confidence                                                                                           0


Q ss_pred             CcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCc-----------------------ccccCCCCcc-EEEEec----
Q psy950          262 LTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS-----------------------SASSNLTNVV-GVEFDY----  313 (407)
Q Consensus       262 ~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~-----------------------~~~~~~~~~~-glAvDw----  313 (407)
                      ...+.+|++|+.+++|||+|... .+|.++..++..                       ....+. .|. |+++|.    
T Consensus       269 ~~~P~gia~~pdG~~lyv~d~~~-~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~-~P~~gv~v~~~~y~  346 (430)
T 3tc9_A          269 SGWEFHIQFHPSGNYAYIVVVNQ-HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMH-APRQGTFVKNPAYK  346 (430)
T ss_dssp             SSCCEEEEECTTSSEEEEEETTT-TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBS-SEEEEEEEECGGGT
T ss_pred             CCcceeEEEcCCCCEEEEEECCC-CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeC-CCcceEEEcccccc
Confidence            00123455666666666666665 566665554320                       000244 788 899974    


Q ss_pred             ---cCCeEEEEeCCCCCeEEEEECCCCcc-cc------------------cCCCceeEEEEcCCCCeEEEEeCCCC
Q psy950          314 ---ADDKILFTQIRPWAKIAWIPTTNPSS-AS------------------SNLTNVVGVEFDYADDKILFTQIRPW  367 (407)
Q Consensus       314 ---i~~~LYwtd~~~~~~I~v~~~~~~~r-l~------------------~~l~~P~~iavdp~~g~lywtd~~~~  367 (407)
                         -.++||++|... ++|.+++.+|.-. +.                  ..+..|+||++||..|.||.+|+++.
T Consensus       347 ~~D~~g~lyvaD~~n-~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~  421 (430)
T 3tc9_A          347 GSSDEYDFYFCDREN-HCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENR  421 (430)
T ss_dssp             TSSCCEEEEEEEGGG-TEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred             ccCCCCeEEEEECCC-cEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCC
Confidence               357999999999 8999998776422 11                  12678999999999999999998543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.74  E-value=1.9e-15  Score=144.30  Aligned_cols=262  Identities=11%  Similarity=0.170  Sum_probs=174.0

Q ss_pred             ceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC-------------CCeEE
Q psy950           36 TTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK-------------LDLIQ  102 (407)
Q Consensus        36 ~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~-------------~~~I~  102 (407)
                      .-++.|  .++||+++.....+|++++.||++.+.|...   .+..|.+|  ++.||+++..             ...|.
T Consensus        19 g~~~~~--g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~---~~~~i~~~--g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy   91 (302)
T 3s25_A           19 GLFCES--DGEVFFSNTNDNGRLYAMNIDGSNIHKLSND---TAMYINAD--KNYVYYVRNNNQKITSQTFFSYDRNSLC   91 (302)
T ss_dssp             TCEEEE--TTEEEEEEGGGTTEEEEEETTSCSCEEEEEE---EEEEEEEC--SSEEEEEEECC------CCSSCCSEEEE
T ss_pred             eEEEEe--CCEEEEEeCCCCceEEEEcCCCCCCEEccCC---ceeeEEEc--CCEEEEEECCCCcccccceeccCCCeEE
Confidence            344544  8999999876556999999999998887753   46777665  7999999754             35799


Q ss_pred             EEecCCCeEEEEccCCCCceEEEEeCCEEEEEe---CCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCC
Q psy950          103 KISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVD---RNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPD  179 (407)
Q Consensus       103 ~~~~dG~~~~~~~~~~~~P~~lav~~~~lYwtd---~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~  179 (407)
                      +++++|+.++.+......  .+++.+++|||++   .....|++++.++ .   ..+.|.....                
T Consensus        92 ~i~~dg~~~~~l~~~~~~--~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s---~~~~lt~~~~----------------  149 (302)
T 3s25_A           92 RIKRNGHGSTVLDPDPCI--YASLIGNYIYYLHYDTQTATSLYRIRIDG-E---EKKKIKNHYL----------------  149 (302)
T ss_dssp             EEETTSCCCEEEECSCEE--EEEEETTEEEEEEESSSSCEEEEEEETTS-C---CCEEEESSCC----------------
T ss_pred             EEeCCCCcceEeecCCcc--EEEEeCCEEEEEeecCCCCceEEEEECCC-C---CeEEEeCCCc----------------
Confidence            999999998776643322  5778999999999   4455899999986 2   2333321100                


Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCCeeeeE
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLTAVPFK  257 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~~~~~~  257 (407)
                        .++.                                    ++++       .|.|+.  ...|.++.++...... + 
T Consensus       150 --~~~~------------------------------------~~g~-------~iy~t~~g~~~Iy~~~l~g~~~~~-l-  182 (302)
T 3s25_A          150 --FTCN------------------------------------TSDR-------YFYYNNPKNGQLYRYDTASQSEAL-F-  182 (302)
T ss_dssp             --CCSE------------------------------------EETT-------EEEEECTTTCCEEEEETTTTEEEE-E-
T ss_pred             --eEee------------------------------------EECC-------EEEEEeCCCceEEEEECCCCCEEE-E-
Confidence              0010                                    0110       133332  2456666665543211 1 


Q ss_pred             eecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccccCCCCccEEEEeccCCeEEEE-eCCCCCeEEEEECCC
Q psy950          258 TVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADDKILFT-QIRPWAKIAWIPTTN  336 (407)
Q Consensus       258 ~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~~~~~~~~glAvDwi~~~LYwt-d~~~~~~I~v~~~~~  336 (407)
                       ....   ....++|.++.|||++.....+|++++++|.....-.....  ..+|+.++.|||+ +... ..|++++++|
T Consensus       183 -~~~~---~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~--~~~~~~g~~Iy~~~~~~~-~~i~~~~~DG  255 (302)
T 3s25_A          183 -YDCN---CYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANI--EHYNVYGSLIFYQRGGDN-PALCVVKNDG  255 (302)
T ss_dssp             -ECSC---EEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCE--EEEEEETTEEEEEECSSS-CEEEEEETTS
T ss_pred             -eCCC---ccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCc--ceEEECCCEEEEEECCCC-cEEEEEECCC
Confidence             2221   12234578999999997642589999999987554122122  4578889999998 5555 7899999999


Q ss_pred             Ccc--cccCCCceeEEEEcCCCCeEEEEeCCCCCcccccCCCCCCCcceeEEEe
Q psy950          337 PSS--ASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILS  388 (407)
Q Consensus       337 ~~r--l~~~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg~~~~~~~~~~l~~  388 (407)
                      ..|  +...  ..  .++.+..++|||+||.... |   ...+++|+++++|+-
T Consensus       256 ~~r~~l~~~--~~--~~i~i~~d~Iy~td~~~~~-i---~~~~~dGs~~~~l~~  301 (302)
T 3s25_A          256 TGFKELAKG--EF--CNINVTSQYVYFTDFVSNK-E---YCTSTQNPDTIKALQ  301 (302)
T ss_dssp             CCCEEEEES--CE--EEEEECSSEEEEEETTTCC-E---EEEESSSCCSCEECC
T ss_pred             CccEEeeCC--cc--ceEEEeCCEEEEEECCCCe-E---EEEECCCCCceEecC
Confidence            864  5443  23  3566689999999997665 5   233567777777664

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.73  E-value=1.7e-15  Score=150.65  Aligned_cols=229  Identities=10%  Similarity=0.006  Sum_probs=167.8

Q ss_pred             CCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCC-eEEEEecCCC
Q psy950           31 FRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD-LIQKISYNGG  109 (407)
Q Consensus        31 ~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~-~I~~~~~dG~  109 (407)
                      .+..|.+||+|+. |.|||+|.... +|.+.++++.....+... ...|. +++++.++.|||++...+ .|..++.++.
T Consensus       129 ~~~~P~~la~d~~-g~lyv~d~~~~-~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          129 KFKYMWGIAAVGN-NTVLAYQRDDP-RVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCCCEEEEEECST-TEEEEEETTTT-EEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             ccCCceEEEEeCC-CCEEEEecCCC-cEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence            3778999999976 78999998764 999999998777777664 45688 999999999999998665 9999998865


Q ss_pred             eE-EEE----ccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCC
Q psy950          110 NR-QII----RRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENN  182 (407)
Q Consensus       110 ~~-~~~----~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n  182 (407)
                      .. ..+    ......|.+++++.  +.||+++. .+.|++++..+ +   ...++.             ...       
T Consensus       205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~-~---~~~~~~-------------~~~-------  259 (409)
T 3hrp_A          205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKT-Q---EVTLIK-------------QLE-------  259 (409)
T ss_dssp             TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTT-C---CEEEEE-------------ECC-------
T ss_pred             ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCC-C---CEEEEe-------------ccc-------
Confidence            54 333    23678999999986  89999876 56888888765 1   111110             000       


Q ss_pred             CccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCC
Q psy950          183 PCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNL  262 (407)
Q Consensus       183 ~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~  262 (407)
                        ..                              |     ..                                     .
T Consensus       260 --~~------------------------------g-----~~-------------------------------------~  265 (409)
T 3hrp_A          260 --LS------------------------------G-----SL-------------------------------------G  265 (409)
T ss_dssp             --CC------------------------------S-----CC-------------------------------------C
T ss_pred             --cc------------------------------C-----CC-------------------------------------C
Confidence              00                              0     00                                     0


Q ss_pred             cceE-EEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc-----------------cCCCCccEEEEeccCCeEEEEeC-
Q psy950          263 TNVV-GVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS-----------------SNLTNVVGVEFDYADDKILFTQI-  323 (407)
Q Consensus       263 ~~~~-ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~-----------------~~~~~~~glAvDwi~~~LYwtd~-  323 (407)
                      .+|. ++++|+.+++||++|... ++|++++.++.....                 .+. .|.|||+|..++ ||++|. 
T Consensus       266 ~~P~~~ia~~p~~g~lyv~d~~~-~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~-~P~gia~d~dG~-lyvad~~  342 (409)
T 3hrp_A          266 TNPGPYLIYYFVDSNFYMSDQNL-SSVYKITPDGECEWFCGSATQKTVQDGLREEALFA-QPNGMTVDEDGN-FYIVDGF  342 (409)
T ss_dssp             CSSCCEEEEETTTTEEEEEETTT-TEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCS-SEEEEEECTTCC-EEEEETT
T ss_pred             CCccccEEEeCCCCEEEEEeCCC-CEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeC-CCeEEEEeCCCC-EEEEeCC
Confidence            0112 677888889999999888 889998887752221                 134 799999998755 999999 


Q ss_pred             CCCCeEEEEEC-CCCcc-ccc---------------CCCceeEEEEcCCCCeEEEEeCCCC
Q psy950          324 RPWAKIAWIPT-TNPSS-ASS---------------NLTNVVGVEFDYADDKILFTQIRPW  367 (407)
Q Consensus       324 ~~~~~I~v~~~-~~~~r-l~~---------------~l~~P~~iavdp~~g~lywtd~~~~  367 (407)
                      .. ++|.++++ +|.-. +..               .+..|.+|++||. |.||++|+++.
T Consensus       343 ~~-~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~  401 (409)
T 3hrp_A          343 KG-YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGK  401 (409)
T ss_dssp             TT-CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTC
T ss_pred             CC-CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCC
Confidence            88 89999994 44322 211               2689999999998 99999998653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.72  E-value=9.8e-16  Score=153.60  Aligned_cols=229  Identities=10%  Similarity=0.056  Sum_probs=161.6

Q ss_pred             CCCCcceEEEeCC--CCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCC----CeEEEE
Q psy950           31 FRSANTTSPFSPL--PRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKL----DLIQKI  104 (407)
Q Consensus        31 ~~~~P~~iavdp~--~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~----~~I~~~  104 (407)
                      .+..|.+|++||.  .|.|||+|..  .+|.|.++++...+.+.. .+..|.+|++|+.++ ||++|...    ..+..+
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~--~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~  212 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQR--DAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF  212 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBT--SCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE
T ss_pred             ccCCCceEEEccccCCCEEEEEeCC--CCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEE
Confidence            5778999999994  8999999987  499999996555555544 567899999999877 99999743    235555


Q ss_pred             ecCCCeE-EEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCC
Q psy950          105 SYNGGNR-QIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDEN  181 (407)
Q Consensus       105 ~~dG~~~-~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~  181 (407)
                      ..++... ......+.+|.+++++.  +.|||+|+..++|++++..+ +.  ..+.            ++.  .    . 
T Consensus       213 ~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~-g~--~~~~------------~~~--~----~-  270 (433)
T 4hw6_A          213 TRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT-GT--LTEE------------EVM--M----D-  270 (433)
T ss_dssp             CGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT-CC--EEEE------------EEE--C----S-
T ss_pred             ECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC-Ce--EEEE------------Eec--c----C-
Confidence            5544332 12223688999999986  89999999999999888764 21  0000            000  0    0 


Q ss_pred             CCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecC
Q psy950          182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSN  261 (407)
Q Consensus       182 n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~  261 (407)
                                                                                         .            
T Consensus       271 -------------------------------------------------------------------~------------  271 (433)
T 4hw6_A          271 -------------------------------------------------------------------T------------  271 (433)
T ss_dssp             -------------------------------------------------------------------C------------
T ss_pred             -------------------------------------------------------------------C------------
Confidence                                                                               0            


Q ss_pred             CcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcc-------c----------------ccCCCCccEEEE-------
Q psy950          262 LTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS-------A----------------SSNLTNVVGVEF-------  311 (407)
Q Consensus       262 ~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~-------~----------------~~~~~~~~glAv-------  311 (407)
                      .....+|++|+.+++||++|... .+|.++..++...       .                ..+. .|.|||+       
T Consensus       272 ~~~~~~ia~dpdG~~LYvad~~~-~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~-~P~giav~~n~~y~  349 (433)
T 4hw6_A          272 KGSNFHIVWHPTGDWAYIIYNGK-HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLW-GPNQGIFVKNEAYA  349 (433)
T ss_dssp             CSSCEEEEECTTSSEEEEEETTT-TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCS-SEEEEEEEECGGGT
T ss_pred             CCCcccEEEeCCCCEEEEEeCCC-CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEc-CCccEEEEcccccc
Confidence            00012466777778888888877 7788877653210       0                0234 7999999       


Q ss_pred             -eccCCeEEEEeCCCCCeEEEEECCCCcc-cc------------------cCCCceeEEEEcCCCCeEEEEeCCCC
Q psy950          312 -DYADDKILFTQIRPWAKIAWIPTTNPSS-AS------------------SNLTNVVGVEFDYADDKILFTQIRPW  367 (407)
Q Consensus       312 -Dwi~~~LYwtd~~~~~~I~v~~~~~~~r-l~------------------~~l~~P~~iavdp~~g~lywtd~~~~  367 (407)
                       |--.++||++|... ++|.+++.+|.-. +.                  ..+..|.||++||..|.||++|+++.
T Consensus       350 ~dd~~g~lyvaD~~n-~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~  424 (433)
T 4hw6_A          350 GEEDEYDFYFCDRDS-HTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH  424 (433)
T ss_dssp             TSSCCEEEEEEETTT-TEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred             ccCCCCcEEEEECCC-CEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence             34578999999999 8999998776422 11                  13678999999999999999998643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.64  E-value=8.6e-13  Score=123.09  Aligned_cols=264  Identities=18%  Similarity=0.154  Sum_probs=174.8

Q ss_pred             EcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecC
Q psy950           28 KTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN  107 (407)
Q Consensus        28 ~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~d  107 (407)
                      +......|.+|++|+. |.||+++.... .|.+.+.+|.-....+......|.+|++|+ .++||+++...+.|.+++.+
T Consensus        15 ~~~~~~~p~~i~~d~~-g~l~v~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           15 LSIPDSGPYGITSSED-GKVWFTQHKAN-KISSLDQSGRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             CSSTTCCEEEEEECTT-SCEEEEETTTT-EEEEECTTSCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT
T ss_pred             cCCCCCCcceeeECCC-CCEEEEcCCCC-eEEEECCCCceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCC
Confidence            3445778999999987 88999997654 899999884433322223356899999996 56899999988999999999


Q ss_pred             CCeEEEEc-cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEE-cccCCCCceeeEEeeecCCCCCCCCCc
Q psy950          108 GGNRQIIR-RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTP-IRTGLSGLRDIAIFDIVNQPPDENNPC  184 (407)
Q Consensus       108 G~~~~~~~-~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~-i~~~~~~p~~i~i~~~~~qp~~~~n~C  184 (407)
                      |....... .....|.+|+++. +.+|+++...+.|.+.+..+  .  .... +......|.+|.+              
T Consensus        92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~--~~~~~~~~~~~~~~~i~~--------------  153 (300)
T 2qc5_A           92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADG--T--IYEYDLPNKGSYPAFITL--------------  153 (300)
T ss_dssp             SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS--C--EEEEECSSTTCCEEEEEE--------------
T ss_pred             CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCC--C--EEEccCCCCCCCceeEEE--------------
Confidence            66543333 3457899999985 89999998888898887653  1  1111 1101111222111              


Q ss_pred             cCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCCeeeeEeecCC
Q psy950          185 FRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLTAVPFKTVSNL  262 (407)
Q Consensus       185 ~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~~~~~~~~~~~  262 (407)
                                                          .++++        |+++.  ...|..+.... ... .+..-...
T Consensus       154 ------------------------------------d~~g~--------l~v~~~~~~~i~~~~~~g-~~~-~~~~~~~~  187 (300)
T 2qc5_A          154 ------------------------------------GSDNA--------LWFTENQNNSIGRITNTG-KLE-EYPLPTNA  187 (300)
T ss_dssp             ------------------------------------CTTSS--------EEEEETTTTEEEEECTTC-CEE-EEECSSTT
T ss_pred             ------------------------------------CCCCC--------EEEEecCCCeEEEECCCC-cEE-EeeCCCCC
Confidence                                                11111        22222  22344443311 111 11111224


Q ss_pred             cceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc
Q psy950          263 TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS  338 (407)
Q Consensus       263 ~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~  338 (407)
                      ..+.++.+|. ++.||+++... +.|.+++.++.....    ... .|.+|++|.- ++||+++... +.|.+++.++..
T Consensus       188 ~~~~~i~~d~-~g~l~v~~~~~-~~i~~~~~~g~~~~~~~~~~~~-~~~~i~~d~~-g~l~v~~~~~-~~i~~~~~~g~~  262 (300)
T 2qc5_A          188 AAPVGITSGN-DGALWFVEIMG-NKIGRITTTGEISEYDIPTPNA-RPHAITAGKN-SEIWFTEWGA-NQIGRITNDNTI  262 (300)
T ss_dssp             CCEEEEEECT-TSSEEEEETTT-TEEEEECTTCCEEEEECSSTTC-CEEEEEECST-TCEEEEETTT-TEEEEECTTSCE
T ss_pred             CCcceEEECC-CCCEEEEccCC-CEEEEEcCCCcEEEEECCCCCC-CceEEEECCC-CCEEEeccCC-CeEEEECCCCcE
Confidence            5678899997 45899999877 789998886543221    334 8999999987 5699999887 789999986653


Q ss_pred             c---cccCCCceeEEEEcCCCCeEEEEeC
Q psy950          339 S---ASSNLTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       339 r---l~~~l~~P~~iavdp~~g~lywtd~  364 (407)
                      .   +......|.+|++|+. |.||++++
T Consensus       263 ~~~~~~~~~~~~~~i~~~~~-g~l~v~~~  290 (300)
T 2qc5_A          263 QEYQLQTENAEPHGITFGKD-GSVWFALK  290 (300)
T ss_dssp             EEEECCSTTCCCCCEEECTT-SCEEEECS
T ss_pred             EEEECCccCCccceeEeCCC-CCEEEEcc
Confidence            3   2235678999999986 88999986

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=2e-13  Score=137.85  Aligned_cols=243  Identities=13%  Similarity=0.074  Sum_probs=172.0

Q ss_pred             CCCCCcceEEEeCC-CCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCC---CCCceeEEE-------eCCCCeEEEEeCCC
Q psy950           30 SFRSANTTSPFSPL-PRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNG---ISMPRDLTI-------DMQTHDVYWVDAKL   98 (407)
Q Consensus        30 ~~~~~P~~iavdp~-~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~---~~~P~glai-------D~~~~~lYw~d~~~   98 (407)
                      ..+..|.+|++||. .+.||.++...+ +|.+.++.+...+++...+   +..|.+|++       |..+++||++|...
T Consensus       136 ~~~~~p~~la~dp~~~~~Lyv~~~~~~-~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~  214 (496)
T 3kya_A          136 CGFSDNGRLAFDPLNKDHLYICYDGHK-AIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD  214 (496)
T ss_dssp             BCCCSEEEEEEETTEEEEEEEEEETEE-EEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred             cccCCCCEEEEccCCCCEEEEEECCCC-eEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence            34678999999994 899999998754 8999999998888888643   446999999       99888999999876


Q ss_pred             C------eEEEEecCC--CeE-----EEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecC-------CCCCCcccE
Q psy950           99 D------LIQKISYNG--GNR-----QIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKL-------ASTNITLPT  156 (407)
Q Consensus        99 ~------~I~~~~~dG--~~~-----~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~-------~~g~~~~~~  156 (407)
                      +      .|..++.+.  .-.     +.+ ....+|.++++++  +.||++++..+.|++.+..       + +.   . 
T Consensus       215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v-~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t-g~---~-  288 (496)
T 3kya_A          215 GKGDESPSVYIIKRNADGTFDDRSDIQLI-AAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN-GG---S-  288 (496)
T ss_dssp             TTGGGEEEEEEEECCTTSCCSTTSCEEEE-EEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT-TC---C-
T ss_pred             CCcccCceEEEEecCCCCceeecccceee-ccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccC-ce---e-
Confidence            2      377774333  321     233 3578999999987  8999999999999998876       2 10   0 


Q ss_pred             EcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeee
Q psy950          157 PIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVF  236 (407)
Q Consensus       157 ~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~  236 (407)
                                        ..|.    ....  -+                          ++.              .  
T Consensus       289 ------------------~tp~----~~~~--~g--------------------------~~~--------------~--  302 (496)
T 3kya_A          289 ------------------WDPI----VKNN--PN--------------------------TFK--------------Q--  302 (496)
T ss_dssp             ------------------CCCB----GGGC--TT--------------------------TEE--------------E--
T ss_pred             ------------------eccc----cccc--cc--------------------------ccc--------------e--
Confidence                              0000    0000  00                          000              0  


Q ss_pred             ecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcc-------cc---------
Q psy950          237 STRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS-------AS---------  300 (407)
Q Consensus       237 s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~-------~~---------  300 (407)
                           +  +            .+.....+.+|++++.++.||++|... .+|+++..++...       ..         
T Consensus       303 -----l--~------------~~~~~~~p~~ia~~p~G~~lYvaD~~~-h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~  362 (496)
T 3kya_A          303 -----L--F------------TIADPSWEFQIFIHPTGKYAYFGVINN-HYFMRSDYDEIKKEFITPYNFVGGYKQSGYR  362 (496)
T ss_dssp             -----E--E------------ECSSSSCCEEEEECTTSSEEEEEETTT-TEEEEEEEETTTTEECCCEEEEEBTTBCCCB
T ss_pred             -----e--E------------ecCCCCCceEEEEcCCCCEEEEEeCCC-CEEEEEecCCCcceecccEEecCCCCCCccc
Confidence                 0  0            001112346788899999999999888 8898877665321       00         


Q ss_pred             -------cCCCCcc-EEEEec------cCCeEEEEeCCCCCeEEEEECCCCcc-cc------------------------
Q psy950          301 -------SNLTNVV-GVEFDY------ADDKILFTQIRPWAKIAWIPTTNPSS-AS------------------------  341 (407)
Q Consensus       301 -------~~~~~~~-glAvDw------i~~~LYwtd~~~~~~I~v~~~~~~~r-l~------------------------  341 (407)
                             .+. .|. |+++|-      ..++||++|... ++|.+++.+|.-. +.                        
T Consensus       363 DG~~~~a~f~-~P~~gv~vd~~~~~~~~~g~lyVaD~~N-~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~  440 (496)
T 3kya_A          363 DDVGTEARMN-NPCQGVFVKNPDYTGEEEYDFYFVDRLN-FCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREV  440 (496)
T ss_dssp             CCBGGGCBCS-SEEEEEEEECTTCCSSCCEEEEEEEGGG-TEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTT
T ss_pred             CCcccccccC-CCeEEEEEccccccccCCCeEEEEECCC-CEEEEEeCCCCEEEEecccccccccCccccccCCCCchhh
Confidence                   233 688 888873      578999999999 8999998776421 11                        


Q ss_pred             cCCCceeEEEEcCCCCeEEEEeCCCC
Q psy950          342 SNLTNVVGVEFDYADDKILFTQIRPW  367 (407)
Q Consensus       342 ~~l~~P~~iavdp~~g~lywtd~~~~  367 (407)
                      ..+..|.||++|+.+|.||.+|.++.
T Consensus       441 a~f~~P~gIavd~~~g~lyVaD~~N~  466 (496)
T 3kya_A          441 ARFRDVSGLVYDDVKEMFYVHDQVGH  466 (496)
T ss_dssp             CCCSSEEEEEEETTTTEEEEEETTTT
T ss_pred             hhcCCCcEEEEECCCCEEEEEeCCCC
Confidence            13688999999999999999998654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.61  E-value=3e-13  Score=124.89  Aligned_cols=237  Identities=16%  Similarity=0.178  Sum_probs=156.0

Q ss_pred             EcCCCC---CcceEEEeCCCCEEEE-EEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEE
Q psy950           28 KTSFRS---ANTTSPFSPLPRLLYW-IDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQK  103 (407)
Q Consensus        28 ~~~~~~---~P~~iavdp~~g~lyw-td~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~  103 (407)
                      ...++.   .|.+|++|+. |.||+ ++.... +|.+.+.++.....+.......|.+|++|+. ++||+++. .+.|.+
T Consensus        16 ~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~-~~~i~~   91 (270)
T 1rwi_B           16 PFTGIDFRLSPSGVAVDSA-GNVYVTSEGMYG-RVVKLATGSTGTTVLPFNGLYQPQGLAVDGA-GTVYVTDF-NNRVVT   91 (270)
T ss_dssp             CCCSCSSCCCEEEEEECTT-CCEEEEECSSSC-EEEEECC-----EECCCCSCCSCCCEEECTT-CCEEEEET-TTEEEE
T ss_pred             ccccccccCCccceEECCC-CCEEEEccCCCC-cEEEecCCCcccceEeeCCcCCcceeEECCC-CCEEEEcC-CCEEEE
Confidence            344555   9999999987 67999 876654 8999887766544433344568999999995 56999998 889999


Q ss_pred             EecCCCeEEEEc-cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEc-ccCCCCceeeEEeeecCCCCCC
Q psy950          104 ISYNGGNRQIIR-RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPI-RTGLSGLRDIAIFDIVNQPPDE  180 (407)
Q Consensus       104 ~~~dG~~~~~~~-~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i-~~~~~~p~~i~i~~~~~qp~~~  180 (407)
                      ++.+|.....+. .....|.+|+++. +.||+++...+.|.+.+...   . ..... ...+..|.+|.           
T Consensus        92 ~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~---~-~~~~~~~~~~~~p~~i~-----------  156 (270)
T 1rwi_B           92 LAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS---K-TQTVLPFTGLNDPDGVA-----------  156 (270)
T ss_dssp             ECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC---C-SCEECCCCSCCSCCCEE-----------
T ss_pred             EeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC---c-eeEeeccccCCCceeEE-----------
Confidence            999987765543 4557899999985 78999999888888885332   1 11111 00011111111           


Q ss_pred             CCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCCeeeeEe
Q psy950          181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLTAVPFKT  258 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~~~~~~~  258 (407)
                                                             +.++++        ++++.  ...|..+.......  ....
T Consensus       157 ---------------------------------------~~~~g~--------l~v~~~~~~~i~~~~~~~~~~--~~~~  187 (270)
T 1rwi_B          157 ---------------------------------------VDNSGN--------VYVTDTDNNRVVKLEAESNNQ--VVLP  187 (270)
T ss_dssp             ---------------------------------------ECTTCC--------EEEEEGGGTEEEEECTTTCCE--EECC
T ss_pred             ---------------------------------------EeCCCC--------EEEEECCCCEEEEEecCCCce--Eeec
Confidence                                                   112221        22322  23455554433211  1111


Q ss_pred             ecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEEC
Q psy950          259 VSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPT  334 (407)
Q Consensus       259 ~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~  334 (407)
                      ...+..+.+|.+|..+ +||+++... +.|.+++.++.....    ++. .|.+|++|.-+ +||+++... ++|.++++
T Consensus       188 ~~~~~~p~~i~~d~~g-~l~v~~~~~-~~v~~~~~~~~~~~~~~~~~~~-~p~~i~~~~~g-~l~v~~~~~-~~v~~~~~  262 (270)
T 1rwi_B          188 FTDITAPWGIAVDEAG-TVYVTEHNT-NQVVKLLAGSTTSTVLPFTGLN-TPLAVAVDSDR-TVYVADRGN-DRVVKLTS  262 (270)
T ss_dssp             CSSCCSEEEEEECTTC-CEEEEETTT-SCEEEECTTCSCCEECCCCSCS-CEEEEEECTTC-CEEEEEGGG-TEEEEECC
T ss_pred             ccCCCCceEEEECCCC-CEEEEECCC-CcEEEEcCCCCcceeeccCCCC-CceeEEECCCC-CEEEEECCC-CEEEEEcC
Confidence            2234668899999765 899999887 789999988754332    344 89999999865 699999999 89999887


Q ss_pred             CCC
Q psy950          335 TNP  337 (407)
Q Consensus       335 ~~~  337 (407)
                      ...
T Consensus       263 ~~~  265 (270)
T 1rwi_B          263 LEH  265 (270)
T ss_dssp             CGG
T ss_pred             CCc
Confidence            654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.60  E-value=1.2e-14  Score=138.81  Aligned_cols=122  Identities=11%  Similarity=0.111  Sum_probs=99.8

Q ss_pred             eeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEE-
Q psy950           16 LALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWV-   94 (407)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~-   94 (407)
                      +..++|+.++++..    .+..++++|..++|||++++..++|+|++|||+++++|++..+  |   .+|+.+++|||+ 
T Consensus       171 ~~~l~g~~~~~l~~----~~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~--~---~~~~~g~~Iy~~~  241 (302)
T 3s25_A          171 RYDTASQSEALFYD----CNCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANI--E---HYNVYGSLIFYQR  241 (302)
T ss_dssp             EEETTTTEEEEEEC----SCEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCE--E---EEEEETTEEEEEE
T ss_pred             EEECCCCCEEEEeC----CCccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCc--c---eEEECCCEEEEEE
Confidence            34456777666643    3455678899999999999866799999999999999876544  3   377789999997 


Q ss_pred             eCCCCeEEEEecCCCeEEEEccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCC
Q psy950           95 DAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus        95 d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~  148 (407)
                      +...+.|+++++||+.++.+...  +..+|++++++|||+||..+.|++++.++
T Consensus       242 ~~~~~~i~~~~~DG~~r~~l~~~--~~~~i~i~~d~Iy~td~~~~~i~~~~~dG  293 (302)
T 3s25_A          242 GGDNPALCVVKNDGTGFKELAKG--EFCNINVTSQYVYFTDFVSNKEYCTSTQN  293 (302)
T ss_dssp             CSSSCEEEEEETTSCCCEEEEES--CEEEEEECSSEEEEEETTTCCEEEEESSS
T ss_pred             CCCCcEEEEEECCCCccEEeeCC--ccceEEEeCCEEEEEECCCCeEEEEECCC
Confidence            66679999999999998877643  35689999999999999999999998776

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.59  E-value=1.7e-12  Score=124.62  Aligned_cols=239  Identities=13%  Similarity=0.095  Sum_probs=163.4

Q ss_pred             CCCCCcceEEEeCCCCEEEEEEcCCC-----------------------CeEEEEeCC-CCCeEEEEeCCCCCceeEEEe
Q psy950           30 SFRSANTTSPFSPLPRLLYWIDYGQY-----------------------PRIGKSYLD-GSKWTSIVSNGISMPRDLTID   85 (407)
Q Consensus        30 ~~~~~P~~iavdp~~g~lywtd~~~~-----------------------~~I~r~~~d-G~~~~~l~~~~~~~P~glaiD   85 (407)
                      ..+..|.+||+||. |.||+++.+..                       .+|.+.+.+ |.-........+..|.+|++|
T Consensus        21 ~~l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d   99 (329)
T 3fvz_A           21 LLPGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSID   99 (329)
T ss_dssp             CCCSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEEC
T ss_pred             eecCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEEC
Confidence            35778999999997 79999998652                       268888886 554333222346689999999


Q ss_pred             CCCCeEEEEeCCCCeEEEEecCCC--eEEEEc---------cCCCCceEEEEeC--CEEEEEeC-CCCeEEEEecCCCCC
Q psy950           86 MQTHDVYWVDAKLDLIQKISYNGG--NRQIIR---------RNLPNPMGIAVHK--SDVYWVDR-NLRTVYKASKLASTN  151 (407)
Q Consensus        86 ~~~~~lYw~d~~~~~I~~~~~dG~--~~~~~~---------~~~~~P~~lav~~--~~lYwtd~-~~~~I~~~~~~~~g~  151 (407)
                      +. ++||++|...++|.+.+.+|.  ....+.         ..+..|.+|+++.  +.||++|. ..++|.+.+..+  .
T Consensus       100 ~~-g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g--~  176 (329)
T 3fvz_A          100 TD-GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG--K  176 (329)
T ss_dssp             TT-SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS--C
T ss_pred             CC-CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC--C
Confidence            84 559999999999999999998  344442         3466899999984  89999996 688888888553  1


Q ss_pred             CcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccc
Q psy950          152 ITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMD  231 (407)
Q Consensus       152 ~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~  231 (407)
                        ....+.            . .                          +.              +     +.       
T Consensus       177 --~~~~~~------------~-~--------------------------g~--------------~-----~~-------  189 (329)
T 3fvz_A          177 --FVTQWG------------E-E--------------------------SS--------------G-----SS-------  189 (329)
T ss_dssp             --EEEEEC------------E-E--------------------------CC--------------S-----SS-------
T ss_pred             --EEEEec------------c-C--------------------------CC--------------C-----CC-------
Confidence              111100            0 0                          00              0     00       


Q ss_pred             eeeeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCC-CCcccc----cCCCCc
Q psy950          232 EYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTT-NPSSAS----SNLTNV  306 (407)
Q Consensus       232 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~-~~~~~~----~~~~~~  306 (407)
                                       ...        ..+..+.+|++|+.++.||++|... ++|.+++.+ |.....    ..+..+
T Consensus       190 -----------------~~~--------~~~~~p~gia~d~~~g~l~v~d~~~-~~I~~~~~~~G~~~~~~~~~~~~~~~  243 (329)
T 3fvz_A          190 -----------------PRP--------GQFSVPHSLALVPHLDQLCVADREN-GRIQCFKTDTKEFVREIKHASFGRNV  243 (329)
T ss_dssp             -----------------CCT--------TEESCEEEEEEETTTTEEEEEETTT-TEEEEEETTTCCEEEEECCTTTTTCE
T ss_pred             -----------------CCC--------cccCCCcEEEEECCCCEEEEEECCC-CEEEEEECCCCcEEEEEeccccCCCc
Confidence                             000        0112357889998889999999998 899999988 432221    223356


Q ss_pred             cEEEEec-----cCCeEEEEeCCCCCeEEEEECCCCcc---c---ccCCCceeEEEEcCCCCeEEEEeCCCC
Q psy950          307 VGVEFDY-----ADDKILFTQIRPWAKIAWIPTTNPSS---A---SSNLTNVVGVEFDYADDKILFTQIRPW  367 (407)
Q Consensus       307 ~glAvDw-----i~~~LYwtd~~~~~~I~v~~~~~~~r---l---~~~l~~P~~iavdp~~g~lywtd~~~~  367 (407)
                      .++++.+     ..+++|+++... .+|.++++.....   +   ...+..|.+|++||. |.||.+|.++.
T Consensus       244 ~~~~~~pg~~~~~~g~~~v~~~~~-~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d-G~lyvad~~~~  313 (329)
T 3fvz_A          244 FAISYIPGFLFAVNGKPYFGDQEP-VQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED-GTVYIGDAHTN  313 (329)
T ss_dssp             EEEEEETTEEEEEECCCCTTCSCC-CCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT-SEEEEEESSSC
T ss_pred             ceeeecCCEEEEeCCCEEeccCCC-cEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC-CCEEEEECCCC
Confidence            6666665     123355555555 6899998765542   2   246788999999995 59999998654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.56  E-value=2.3e-11  Score=113.22  Aligned_cols=264  Identities=18%  Similarity=0.156  Sum_probs=172.0

Q ss_pred             eEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEE-eCCCCCceeEEEeCCCCeEEEEeCCCCeEEE
Q psy950           25 KKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIV-SNGISMPRDLTIDMQTHDVYWVDAKLDLIQK  103 (407)
Q Consensus        25 ~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~-~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~  103 (407)
                      ..-+......|.+|++|+. |.||+++.... .|.+.+.+|. ...+. ......|.+|++|+ .++||+++...+.|.+
T Consensus         7 ~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~-~v~~~d~~~~-~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~   82 (299)
T 2z2n_A            7 ELNLTNQDTGPYGITVSDK-GKVWITQHKAN-MISCINLDGK-ITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGR   82 (299)
T ss_dssp             EEECCSSSCCEEEEEECTT-SCEEEEETTTT-EEEEECTTCC-EEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEE
T ss_pred             EEcCCCcCCCccceEECCC-CCEEEEecCCC-cEEEEcCCCC-eEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEE
Confidence            3344445678999999987 78999987543 8999999844 33332 22356899999998 5789999988899999


Q ss_pred             EecCCCeEEEEc-cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcc--cCCCCceeeEEeeecCCCCC
Q psy950          104 ISYNGGNRQIIR-RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIR--TGLSGLRDIAIFDIVNQPPD  179 (407)
Q Consensus       104 ~~~dG~~~~~~~-~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~--~~~~~p~~i~i~~~~~qp~~  179 (407)
                      .+.+|....... .....|.+|++++ +.||+++...+.|.+.+..+  .   ...+.  .....|.+|           
T Consensus        83 ~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g--~---~~~~~~~~~~~~~~~i-----------  146 (299)
T 2z2n_A           83 ITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDG--K---IREYELPNKGSYPSFI-----------  146 (299)
T ss_dssp             ECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTC--C---EEEEECSSTTCCEEEE-----------
T ss_pred             ECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCC--C---EEEecCCCCCCCCceE-----------
Confidence            999876543332 3567899999986 89999998888899888732  1   11110  000111111           


Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCCeeeeE
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLTAVPFK  257 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~~~~~~  257 (407)
                                      ++                       .+++.        ++++.  ...|..+.. ..... .+.
T Consensus       147 ----------------~~-----------------------~~~g~--------l~v~~~~~~~i~~~~~-~g~~~-~~~  177 (299)
T 2z2n_A          147 ----------------TL-----------------------GSDNA--------LWFTENQNNAIGRITE-SGDIT-EFK  177 (299)
T ss_dssp             ----------------EE-----------------------CTTSC--------EEEEETTTTEEEEECT-TCCEE-EEE
T ss_pred             ----------------EE-----------------------cCCCC--------EEEEeCCCCEEEEEcC-CCcEE-Eee
Confidence                            11                       11111        22222  134444443 11111 110


Q ss_pred             eecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEE
Q psy950          258 TVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIP  333 (407)
Q Consensus       258 ~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~  333 (407)
                      .......+.++.+|.. +.||+++... +.|.+++.++.....    ... .|.+|++|.- ++||+++... +.|.+++
T Consensus       178 ~~~~~~~~~~i~~~~~-g~l~v~~~~~-~~i~~~~~~g~~~~~~~~~~~~-~~~~i~~~~~-g~l~v~~~~~-~~i~~~d  252 (299)
T 2z2n_A          178 IPTPASGPVGITKGND-DALWFVEIIG-NKIGRITTSGEITEFKIPTPNA-RPHAITAGAG-IDLWFTEWGA-NKIGRLT  252 (299)
T ss_dssp             CSSTTCCEEEEEECTT-SSEEEEETTT-TEEEEECTTCCEEEEECSSTTC-CEEEEEECST-TCEEEEETTT-TEEEEEE
T ss_pred             CCCCCCcceeEEECCC-CCEEEEccCC-ceEEEECCCCcEEEEECCCCCC-CceeEEECCC-CCEEEeccCC-ceEEEEC
Confidence            1123455778999876 5589998777 789998885432211    234 8999999976 5699999877 7899999


Q ss_pred             CCCCcc-c--ccCCCceeEEEEcCCCCeEEEEeC
Q psy950          334 TTNPSS-A--SSNLTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       334 ~~~~~r-l--~~~l~~P~~iavdp~~g~lywtd~  364 (407)
                      .++..+ +  ......|.+|++  ..|.||+++.
T Consensus       253 ~~g~~~~~~~~~~~~~~~~i~~--~~g~l~v~~~  284 (299)
T 2z2n_A          253 SNNIIEEYPIQIKSAEPHGICF--DGETIWFAME  284 (299)
T ss_dssp             TTTEEEEEECSSSSCCEEEEEE--CSSCEEEEET
T ss_pred             CCCceEEEeCCCCCCccceEEe--cCCCEEEEec
Confidence            865432 2  235678999999  6789999874

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=2.2e-12  Score=129.01  Aligned_cols=118  Identities=9%  Similarity=-0.044  Sum_probs=95.7

Q ss_pred             cCCCCCcceEEEeCCCCEEEEEEcCC---CCeEEEEeCCCCCe--EEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEE
Q psy950           29 TSFRSANTTSPFSPLPRLLYWIDYGQ---YPRIGKSYLDGSKW--TSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQK  103 (407)
Q Consensus        29 ~~~~~~P~~iavdp~~g~lywtd~~~---~~~I~r~~~dG~~~--~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~  103 (407)
                      ......|.+|++|+..++|||+|...   ...+.+...+|.-.  ..+.  .+..|.++++|+.+++|||+|...++|.+
T Consensus       175 ~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~  252 (430)
T 3tc9_A          175 YSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFR  252 (430)
T ss_dssp             ECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred             ecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEE
Confidence            34677899999999988899999843   23577778787654  3443  36789999999989999999999999999


Q ss_pred             EecCCCeEEEEc--cCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCC
Q psy950          104 ISYNGGNRQIIR--RNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       104 ~~~dG~~~~~~~--~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~  148 (407)
                      ++.++.....+.  .....|.+|+++.  ++|||+|...+.|.+++.++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          253 YDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            999988763332  3456899999986  46999999999999988775

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.54  E-value=6.6e-12  Score=117.18  Aligned_cols=224  Identities=13%  Similarity=0.106  Sum_probs=159.4

Q ss_pred             CCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeC-----CCCCceeEEEeCCCCeEEEEeCC-CCeEEEE
Q psy950           31 FRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSN-----GISMPRDLTIDMQTHDVYWVDAK-LDLIQKI  104 (407)
Q Consensus        31 ~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~-----~~~~P~glaiD~~~~~lYw~d~~-~~~I~~~  104 (407)
                      .+..|.+|++|+. |.||+++.... +|.+.+.+|.....+...     .+..|.+|+++...++||+++.. .+.|...
T Consensus        28 ~~~~p~~v~~~~~-g~l~v~~~~~~-~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           28 QFTEPSGVAVNAQ-NDIIVADTNNH-RIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             CBSCEEEEEECTT-CCEEEEEGGGT-EEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             ccCCCceEEECCC-CCEEEEECCCC-EEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            4678999999987 67999998754 899999997755444321     23579999998778999999975 7899999


Q ss_pred             ecCCCeEEEEc-cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCC
Q psy950          105 SYNGGNRQIIR-RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENN  182 (407)
Q Consensus       105 ~~dG~~~~~~~-~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n  182 (407)
                      +.+|.....+. .....|.+|+++. +.+|+++...+.|.+.+..+  .  ....             +.   .+     
T Consensus       106 d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~--~~~~-------------~~---~~-----  160 (286)
T 1q7f_A          106 NQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG--N--VLHK-------------FG---CS-----  160 (286)
T ss_dssp             CTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS--C--EEEE-------------EE---CT-----
T ss_pred             CCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC--C--EEEE-------------eC---CC-----
Confidence            98888766554 4567899999986 78999988777777766432  1  0000             00   00     


Q ss_pred             CccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCC
Q psy950          183 PCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNL  262 (407)
Q Consensus       183 ~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~  262 (407)
                                                                                                   ...
T Consensus       161 -----------------------------------------------------------------------------~~~  163 (286)
T 1q7f_A          161 -----------------------------------------------------------------------------KHL  163 (286)
T ss_dssp             -----------------------------------------------------------------------------TTC
T ss_pred             -----------------------------------------------------------------------------Ccc
Confidence                                                                                         001


Q ss_pred             cceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----c-CCCCccEEEEeccCCeEEEEeCCCCC-eEEEEECCC
Q psy950          263 TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----S-NLTNVVGVEFDYADDKILFTQIRPWA-KIAWIPTTN  336 (407)
Q Consensus       263 ~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~-~~~~~~glAvDwi~~~LYwtd~~~~~-~I~v~~~~~  336 (407)
                      ..+.+|++|+. +.+|+++... +.|.+++.++.....    + +. .|.+|++|.- ++||.++... + +|.+++.++
T Consensus       164 ~~p~~i~~~~~-g~l~v~~~~~-~~i~~~~~~g~~~~~~~~~g~~~-~p~~i~~d~~-G~l~v~~~~~-~~~i~~~~~~g  238 (286)
T 1q7f_A          164 EFPNGVVVNDK-QEIFISDNRA-HCVKVFNYEGQYLRQIGGEGITN-YPIGVGINSN-GEILIADNHN-NFNLTIFTQDG  238 (286)
T ss_dssp             SSEEEEEECSS-SEEEEEEGGG-TEEEEEETTCCEEEEESCTTTSC-SEEEEEECTT-CCEEEEECSS-SCEEEEECTTS
T ss_pred             CCcEEEEECCC-CCEEEEECCC-CEEEEEcCCCCEEEEEccCCccC-CCcEEEECCC-CCEEEEeCCC-CEEEEEECCCC
Confidence            12345666654 4578877766 678887776643222    1 34 8999999985 5899999887 6 899999877


Q ss_pred             Ccc--ccc--CCCceeEEEEcCCCCeEEEEeC
Q psy950          337 PSS--ASS--NLTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       337 ~~r--l~~--~l~~P~~iavdp~~g~lywtd~  364 (407)
                      ...  +..  ....|.+|+++| .|.||.++.
T Consensus       239 ~~~~~~~~~~~~~~~~~i~~~~-~g~l~vs~~  269 (286)
T 1q7f_A          239 QLISALESKVKHAQCFDVALMD-DGSVVLASK  269 (286)
T ss_dssp             CEEEEEEESSCCSCEEEEEEET-TTEEEEEET
T ss_pred             CEEEEEcccCCCCcceeEEECC-CCcEEEECC
Confidence            642  322  345799999999 579999975

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.53  E-value=6.3e-12  Score=124.91  Aligned_cols=206  Identities=11%  Similarity=0.023  Sum_probs=146.4

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEE----eCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecC
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIV----SNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN  107 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~----~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~d  107 (407)
                      ...|. ++++|..+.|||++.....+|.+.+.++......+    ......|.++++|+.+++||++|. .++|.+++++
T Consensus       171 ~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~  248 (409)
T 3hrp_A          171 FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVK  248 (409)
T ss_dssp             CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETT
T ss_pred             CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECC
Confidence            56688 99999999999999865448999999876653333    224568999999999999999886 7799999999


Q ss_pred             CCeEEEE----c--cCCCCce-EEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCC
Q psy950          108 GGNRQII----R--RNLPNPM-GIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPP  178 (407)
Q Consensus       108 G~~~~~~----~--~~~~~P~-~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~  178 (407)
                      +....++    .  .....|+ +|+++.  +.||++|...++|.+.+.++  .   ...+.            . ..   
T Consensus       249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g--~---~~~~~------------g-~~---  307 (409)
T 3hrp_A          249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG--E---CEWFC------------G-SA---  307 (409)
T ss_dssp             TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC--C---EEEEE------------E-CT---
T ss_pred             CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC--C---EEEEE------------e-CC---
Confidence            8776655    2  2234578 999986  89999999999999998765  1   11111            0 00   


Q ss_pred             CCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEe
Q psy950          179 DENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKT  258 (407)
Q Consensus       179 ~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~  258 (407)
                          .+.                               |+.   |+. -                              .
T Consensus       308 ----~~~-------------------------------g~~---dg~-~------------------------------~  318 (409)
T 3hrp_A          308 ----TQK-------------------------------TVQ---DGL-R------------------------------E  318 (409)
T ss_dssp             ----TCC-------------------------------SCB---CEE-G------------------------------G
T ss_pred             ----CCC-------------------------------CcC---CCc-c------------------------------c
Confidence                000                               000   000 0                              0


Q ss_pred             ecCCcceEEEEEEcCCCEEEEEEe-cCCceEEEEeCCCCcccc--c----------------CCCCccEEEEeccCCeEE
Q psy950          259 VSNLTNVVGVEFDYADDKILFTQI-RPWAKIAWIPTTNPSSAS--S----------------NLTNVVGVEFDYADDKIL  319 (407)
Q Consensus       259 ~~~~~~~~ald~d~~~~~lywsd~-~~~~~I~~~~~~~~~~~~--~----------------~~~~~~glAvDwi~~~LY  319 (407)
                      ...+..+.+|++|+.++ ||++|. .. .+|+++++.......  +                +. .|.|||+|.- ++||
T Consensus       319 ~~~~~~P~gia~d~dG~-lyvad~~~~-~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~-~P~giavd~~-g~ly  394 (409)
T 3hrp_A          319 EALFAQPNGMTVDEDGN-FYIVDGFKG-YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFN-YPYDICYDGE-GGYW  394 (409)
T ss_dssp             GCBCSSEEEEEECTTCC-EEEEETTTT-CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBS-SEEEEEECSS-SEEE
T ss_pred             ccEeCCCeEEEEeCCCC-EEEEeCCCC-CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeC-CceEEEEcCC-CCEE
Confidence            00123467888887766 999998 87 889998843332221  1                44 7999999998 8999


Q ss_pred             EEeCCCCCeEEEEEC
Q psy950          320 FTQIRPWAKIAWIPT  334 (407)
Q Consensus       320 wtd~~~~~~I~v~~~  334 (407)
                      ++|... ++|.++++
T Consensus       395 Vad~~n-~~Ir~i~~  408 (409)
T 3hrp_A          395 IAEAWG-KAIRKYAV  408 (409)
T ss_dssp             EEESTT-CEEEEEEE
T ss_pred             EEECCC-CeEEEEEe
Confidence            999999 89988765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.49  E-value=9.9e-12  Score=114.59  Aligned_cols=217  Identities=15%  Similarity=0.204  Sum_probs=141.9

Q ss_pred             CceeEEEeCCCCeEEE-EeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcc
Q psy950           78 MPRDLTIDMQTHDVYW-VDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITL  154 (407)
Q Consensus        78 ~P~glaiD~~~~~lYw-~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~  154 (407)
                      .|.+|++|+. ++||+ ++...+.|.+++.++.....+. .....|.+|++++ +.||+++. .+.|.+.+..+ .   .
T Consensus        25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~-~---~   98 (270)
T 1rwi_B           25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS-N---N   98 (270)
T ss_dssp             CEEEEEECTT-CCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC-S---C
T ss_pred             CccceEECCC-CCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC-c---e
Confidence            9999999985 46999 9888999999988765544432 4557899999986 68999998 77899888765 1   1


Q ss_pred             cEEcc-cCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccccccee
Q psy950          155 PTPIR-TGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY  233 (407)
Q Consensus       155 ~~~i~-~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~  233 (407)
                      ...+. ..+..|.+|.+.                                                  +++.        
T Consensus        99 ~~~~~~~~~~~p~~i~~~--------------------------------------------------~~g~--------  120 (270)
T 1rwi_B           99 QTVLPFDGLNYPEGLAVD--------------------------------------------------TQGA--------  120 (270)
T ss_dssp             CEECCCCSCSSEEEEEEC--------------------------------------------------TTCC--------
T ss_pred             EeeeecCCcCCCcceEEC--------------------------------------------------CCCC--------
Confidence            22221 112223333221                                                  1111        


Q ss_pred             eeeec--ccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCcc
Q psy950          234 LVFST--RTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVV  307 (407)
Q Consensus       234 Ll~s~--~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~  307 (407)
                      |+++.  ...|..+......  ...........+.+|.+|+.+ +||+++... +.|.+++.++.....    .+. .|.
T Consensus       121 l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~-~p~  195 (270)
T 1rwi_B          121 VYVADRGNNRVVKLAAGSKT--QTVLPFTGLNDPDGVAVDNSG-NVYVTDTDN-NRVVKLEAESNNQVVLPFTDIT-APW  195 (270)
T ss_dssp             EEEEEGGGTEEEEECTTCCS--CEECCCCSCCSCCCEEECTTC-CEEEEEGGG-TEEEEECTTTCCEEECCCSSCC-SEE
T ss_pred             EEEEECCCCEEEEEECCCce--eEeeccccCCCceeEEEeCCC-CEEEEECCC-CEEEEEecCCCceEeecccCCC-Cce
Confidence            22221  1234333211111  111111223456788899755 599999877 789999988765432    344 899


Q ss_pred             EEEEeccCCeEEEEeCCCCCeEEEEECCCCcc--c-ccCCCceeEEEEcCCCCeEEEEeCCC
Q psy950          308 GVEFDYADDKILFTQIRPWAKIAWIPTTNPSS--A-SSNLTNVVGVEFDYADDKILFTQIRP  366 (407)
Q Consensus       308 glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r--l-~~~l~~P~~iavdp~~g~lywtd~~~  366 (407)
                      +|++|.-+ +||+++... ++|.+++.++...  + ...+..|.+|++||. |.||++++++
T Consensus       196 ~i~~d~~g-~l~v~~~~~-~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~  254 (270)
T 1rwi_B          196 GIAVDEAG-TVYVTEHNT-NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD-RTVYVADRGN  254 (270)
T ss_dssp             EEEECTTC-CEEEEETTT-SCEEEECTTCSCCEECCCCSCSCEEEEEECTT-CCEEEEEGGG
T ss_pred             EEEECCCC-CEEEEECCC-CcEEEEcCCCCcceeeccCCCCCceeEEECCC-CCEEEEECCC
Confidence            99999875 999999988 7899999887653  2 235688999999986 6799999754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.47  E-value=5e-11  Score=113.26  Aligned_cols=229  Identities=10%  Similarity=0.040  Sum_probs=156.9

Q ss_pred             CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCC--eEEEEecCCCe
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD--LIQKISYNGGN  110 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~--~I~~~~~dG~~  110 (407)
                      ..|.++++|+. |.|||+|.... +|.+.+.+|.. ..++.. -..|.||++|+. ++||++|...+  .|.+++.....
T Consensus        32 ~~pegia~~~~-g~lyv~d~~~~-~I~~~d~~g~~-~~~~~~-~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           32 TFLENLASAPD-GTIFVTNHEVG-EIVSITPDGNQ-QIHATV-EGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             CCEEEEEECTT-SCEEEEETTTT-EEEEECTTCCE-EEEEEC-SSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CCcceEEECCC-CCEEEEeCCCC-eEEEECCCCce-EEEEeC-CCCceeEEEcCC-CcEEEEeccCCcceEEEEcCCCCe
Confidence            57999999994 78999998764 99999999853 334443 247999999986 45999997644  48887754444


Q ss_pred             EEEEc--cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCC
Q psy950          111 RQIIR--RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRT  187 (407)
Q Consensus       111 ~~~~~--~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~  187 (407)
                      .+.+.  .....|.|+++.. +.+|.+|...+.|++++..+ +   ...+..           .+....+          
T Consensus       107 ~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~-~---~~~v~~-----------~~~~~~~----------  161 (306)
T 2p4o_A          107 VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ-P---SGSIWL-----------EHPMLAR----------  161 (306)
T ss_dssp             EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT-T---EEEEEE-----------ECGGGSC----------
T ss_pred             EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCC-C---cEeEEE-----------ECCcccc----------
Confidence            43333  3455678888655 67899998888898888653 1   111110           0000000          


Q ss_pred             CcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEE
Q psy950          188 GNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVG  267 (407)
Q Consensus       188 ~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~a  267 (407)
                                   .                   ..                                    ...+..+.+
T Consensus       162 -------------~-------------------~~------------------------------------~~~~~~png  173 (306)
T 2p4o_A          162 -------------S-------------------NS------------------------------------ESVFPAANG  173 (306)
T ss_dssp             -------------S-------------------ST------------------------------------TCCSCSEEE
T ss_pred             -------------c-------------------cc------------------------------------cCCCCcCCC
Confidence                         0                   00                                    000112334


Q ss_pred             EEEEcCCCEEEEEEecCCceEEEEeCCCCccc----c--cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc--
Q psy950          268 VEFDYADDKILFTQIRPWAKIAWIPTTNPSSA----S--SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS--  339 (407)
Q Consensus       268 ld~d~~~~~lywsd~~~~~~I~~~~~~~~~~~----~--~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r--  339 (407)
                      |  ++.+++||++|... ++|.++.+++....    .  ... .|.||++|.-+ +||.++... ++|.+++.+|...  
T Consensus       174 i--s~dg~~lyv~d~~~-~~I~~~~~~~~g~~~~~~~~~~~~-~P~gi~vd~dG-~l~va~~~~-~~V~~~~~~G~~~~~  247 (306)
T 2p4o_A          174 L--KRFGNFLYVSNTEK-MLLLRIPVDSTDKPGEPEIFVEQT-NIDDFAFDVEG-NLYGATHIY-NSVVRIAPDRSTTII  247 (306)
T ss_dssp             E--EEETTEEEEEETTT-TEEEEEEBCTTSCBCCCEEEEESC-CCSSEEEBTTC-CEEEECBTT-CCEEEECTTCCEEEE
T ss_pred             c--CcCCCEEEEEeCCC-CEEEEEEeCCCCCCCccEEEeccC-CCCCeEECCCC-CEEEEeCCC-CeEEEECCCCCEEEE
Confidence            5  44578999999988 88999988752111    1  334 89999999865 899999988 8999999887532  


Q ss_pred             --cccCCCceeEEEEc---CCCCeEEEEeCC
Q psy950          340 --ASSNLTNVVGVEFD---YADDKILFTQIR  365 (407)
Q Consensus       340 --l~~~l~~P~~iavd---p~~g~lywtd~~  365 (407)
                        +...+..|.++++.   |..+.||.++.+
T Consensus       248 ~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          248 AQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             ECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             eecccccCCceEEEEecccCCCCEEEEECCC
Confidence              22356899999999   888999999974

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.47  E-value=1.4e-11  Score=123.27  Aligned_cols=118  Identities=10%  Similarity=0.017  Sum_probs=89.7

Q ss_pred             cCCCCCcceEEEeCCCCEEEEEEcCC---CCeEEEEeCCCCCe-EEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEE
Q psy950           29 TSFRSANTTSPFSPLPRLLYWIDYGQ---YPRIGKSYLDGSKW-TSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKI  104 (407)
Q Consensus        29 ~~~~~~P~~iavdp~~g~lywtd~~~---~~~I~r~~~dG~~~-~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~  104 (407)
                      ...+..|.+||+|+..+ ||++|.+.   ...+.+...++.-. ...+. .+..|.++++|+.+++|||+|...++|.++
T Consensus       178 ~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~  255 (433)
T 4hw6_A          178 TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSY  255 (433)
T ss_dssp             CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEE
T ss_pred             ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEE
Confidence            44677899999999976 99999853   22466666555433 12222 467899999999999999999999999999


Q ss_pred             ecC-CCeEEEEc--cCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCC
Q psy950          105 SYN-GGNRQIIR--RNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       105 ~~d-G~~~~~~~--~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~  148 (407)
                      +.+ |.-...+.  .....+++|++..  ++||++|...+.|.+++.+.
T Consensus       256 d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          256 DPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             CTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred             ECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence            998 55423332  3445678899986  46999999999999988764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.46  E-value=7.8e-11  Score=113.10  Aligned_cols=259  Identities=7%  Similarity=-0.049  Sum_probs=161.4

Q ss_pred             CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC-CCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD-GSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR  111 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d-G~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~  111 (407)
                      ..|.+|+++  .++||.+..... .|.+.+.. |.....+ . ....|.+|++++. ++||+++...+.|.+++......
T Consensus        44 ~~~~~i~~~--~~~lyv~~~~~~-~v~viD~~t~~~~~~i-~-~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~  117 (328)
T 3dsm_A           44 DVAQSMVIR--DGIGWIVVNNSH-VIFAIDINTFKEVGRI-T-GFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEI  117 (328)
T ss_dssp             SCEEEEEEE--TTEEEEEEGGGT-EEEEEETTTCCEEEEE-E-CCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEE
T ss_pred             ccceEEEEE--CCEEEEEEcCCC-EEEEEECcccEEEEEc-C-CCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeE
Confidence            358999997  689999998754 89999987 4433444 3 4578999999875 49999998889999999986654


Q ss_pred             EEEccCCC------CceEEEEeCCEEEEEeCC-CCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCc
Q psy950          112 QIIRRNLP------NPMGIAVHKSDVYWVDRN-LRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPC  184 (407)
Q Consensus       112 ~~~~~~~~------~P~~lav~~~~lYwtd~~-~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C  184 (407)
                      ........      .|.+|++.+++||.+++. .+.|..++..+ +  .....+..+ ..|.++.+.             
T Consensus       118 ~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t-~--~~~~~i~~g-~~p~~i~~~-------------  180 (328)
T 3dsm_A          118 TGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTET-D--KVVDELTIG-IQPTSLVMD-------------  180 (328)
T ss_dssp             EEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTT-T--EEEEEEECS-SCBCCCEEC-------------
T ss_pred             EEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCC-C--eEEEEEEcC-CCccceEEc-------------
Confidence            32222233      899999999999999994 78999998775 2  111111100 111111110             


Q ss_pred             cCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcc
Q psy950          185 FRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTN  264 (407)
Q Consensus       185 ~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~  264 (407)
                                     +.+      ..-..|...+.    ......        ....|..+........ ....+.....
T Consensus       181 ---------------~dG------~l~v~~~~~~~----~~~~~~--------~~~~v~~id~~t~~v~-~~~~~~~g~~  226 (328)
T 3dsm_A          181 ---------------KYN------KMWTITDGGYE----GSPYGY--------EAPSLYRIDAETFTVE-KQFKFKLGDW  226 (328)
T ss_dssp             ---------------TTS------EEEEEBCCBCT----TCSSCB--------CCCEEEEEETTTTEEE-EEEECCTTCC
T ss_pred             ---------------CCC------CEEEEECCCcc----CCcccc--------CCceEEEEECCCCeEE-EEEecCCCCC
Confidence                           000      01111111000    000000        0122343433221110 0112222346


Q ss_pred             eEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cC-CCCccEEEEeccCCeEEEEe----CCCCCeEEEEECC
Q psy950          265 VVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SN-LTNVVGVEFDYADDKILFTQ----IRPWAKIAWIPTT  335 (407)
Q Consensus       265 ~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~-~~~~~glAvDwi~~~LYwtd----~~~~~~I~v~~~~  335 (407)
                      +.+|++++.+++||+++.    .|++++..+.....    .. +..|.|||+|+.+++||.++    ... ++|.+++.+
T Consensus       227 p~~la~~~d~~~lyv~~~----~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~-~~V~v~d~~  301 (328)
T 3dsm_A          227 PSEVQLNGTRDTLYWINN----DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQ-GIVYRYSPQ  301 (328)
T ss_dssp             CEEEEECTTSCEEEEESS----SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSE-EEEEEECTT
T ss_pred             ceeEEEecCCCEEEEEcc----EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccC-CEEEEECCC
Confidence            889999999999999875    48888887654321    11 23899999999999999999    777 899999998


Q ss_pred             CCcc-cccCCCceeEEEEc
Q psy950          336 NPSS-ASSNLTNVVGVEFD  353 (407)
Q Consensus       336 ~~~r-l~~~l~~P~~iavd  353 (407)
                      |... ...--..|.+|+.-
T Consensus       302 g~~~~~i~~G~~P~~~~~~  320 (328)
T 3dsm_A          302 GKLIDEFYVGIIPGAFCWK  320 (328)
T ss_dssp             CCEEEEEEEEESEEEEEEE
T ss_pred             CCEEEEEEeccCcceEEEe
Confidence            5432 22334678887754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.46  E-value=3.2e-11  Score=115.62  Aligned_cols=117  Identities=13%  Similarity=0.048  Sum_probs=96.6

Q ss_pred             CCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCC--eEEEE--------eCCCCCceeEEEeCCCCeEEEEeC-CC
Q psy950           30 SFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSK--WTSIV--------SNGISMPRDLTIDMQTHDVYWVDA-KL   98 (407)
Q Consensus        30 ~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~--~~~l~--------~~~~~~P~glaiD~~~~~lYw~d~-~~   98 (407)
                      ..+..|.+||+||. |.||++|.... +|.+.+.+|..  ...+-        ...+..|.+|++|+.+++||++|. ..
T Consensus        88 ~~~~~p~gia~d~~-g~l~v~d~~~~-~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~  165 (329)
T 3fvz_A           88 NLFYLPHGLSIDTD-GNYWVTDVALH-QVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN  165 (329)
T ss_dssp             TTCSSEEEEEECTT-SCEEEEETTTT-EEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC
T ss_pred             CccCCceEEEECCC-CCEEEEECCCC-EEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC
Confidence            34678999999986 66999999865 99999999983  44443        233558999999998899999997 79


Q ss_pred             CeEEEEecCCCeEEEEc----------cCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCC
Q psy950           99 DLIQKISYNGGNRQIIR----------RNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus        99 ~~I~~~~~dG~~~~~~~----------~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~  148 (407)
                      ++|.+.+.+|.....+.          ..+..|.+|+++.  +.||++|+.+++|.+.+..+
T Consensus       166 ~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~  227 (329)
T 3fvz_A          166 SRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT  227 (329)
T ss_dssp             CEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             CeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence            99999999998877664          2456799999985  79999999999999988774

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.44  E-value=2.3e-11  Score=118.42  Aligned_cols=255  Identities=12%  Similarity=0.067  Sum_probs=158.9

Q ss_pred             cceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEe-----CCCCCceeEEEeCC---CCeEEEE
Q psy950           23 KKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVS-----NGISMPRDLTIDMQ---THDVYWV   94 (407)
Q Consensus        23 ~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~-----~~~~~P~glaiD~~---~~~lYw~   94 (407)
                      .+..++..++..|++|+++|. |.||+++..  .+|.+.+ +|.. +.+..     .+...|.||++++.   +++||++
T Consensus        21 ~~~~~va~~l~~P~~ia~~pd-G~l~V~e~~--g~I~~i~-~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~   95 (352)
T 2ism_A           21 LRVEEVVGGLEVPWALAFLPD-GGMLIAERP--GRIRLFR-EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAY   95 (352)
T ss_dssp             CCEEEEECCCSCEEEEEECTT-SCEEEEETT--TEEEEEE-TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             cEEEEEECCCCCceEEEEcCC-CeEEEEeCC--CeEEEEE-CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence            355566778999999999997 679999986  5999998 7753 33322     23568999999998   8999999


Q ss_pred             eCCC-----CeEEEEecCCC---eEEEEcc-------CCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEc
Q psy950           95 DAKL-----DLIQKISYNGG---NRQIIRR-------NLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPI  158 (407)
Q Consensus        95 d~~~-----~~I~~~~~dG~---~~~~~~~-------~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i  158 (407)
                      +...     ++|.++++++.   ..+++..       ....|.+|++.. ++||+++......     ..   ..+    
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~-----~~---~~d----  163 (352)
T 2ism_A           96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYER-----EL---AQD----  163 (352)
T ss_dssp             EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCG-----GG---GGC----
T ss_pred             EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCC-----cc---ccC----
Confidence            9864     78999999864   2333331       234678999976 7999997543210     00   000    


Q ss_pred             ccCCCCce-eeEEeeec-CCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeee
Q psy950          159 RTGLSGLR-DIAIFDIV-NQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVF  236 (407)
Q Consensus       159 ~~~~~~p~-~i~i~~~~-~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~  236 (407)
                         ..... .|.-+++. +.|  ..||-..                                   ..+            
T Consensus       164 ---~~~~~g~I~ri~~dG~~p--~~npf~~-----------------------------------~~~------------  191 (352)
T 2ism_A          164 ---LASLGGKILRLTPEGEPA--PGNPFLG-----------------------------------RRG------------  191 (352)
T ss_dssp             ---TTCSSSEEEEECTTSSBC--TTCTTTT-----------------------------------CTT------------
T ss_pred             ---CCCCceEEEEEcCCCCCC--CCCcccC-----------------------------------CCC------------
Confidence               00000 00001000 000  0011000                                   000            


Q ss_pred             ecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCce--------EEEEeCCCC------------
Q psy950          237 STRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAK--------IAWIPTTNP------------  296 (407)
Q Consensus       237 s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~--------I~~~~~~~~------------  296 (407)
                                   .   .+.....+++++.++++|+.++.||++|... ..        |.++.-.+.            
T Consensus       192 -------------~---~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~-~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~  254 (352)
T 2ism_A          192 -------------A---RPEVYSLGHRNPQGLAWHPKTGELFSSEHGP-SGEQGYGHDEVNLIVPGGNYGWPRVVGRGND  254 (352)
T ss_dssp             -------------S---CTTEEEECCSEECCCEECTTTCCEEEEEECC-------CCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred             -------------C---CccEEEEcCCCcccEEEECCCCCEEEEEcCC-CCCCCCCCeEEEEeccCCcCCCCcccCCCCC
Confidence                         0   0001122566788899999888999999876 43        666543220            


Q ss_pred             --cccc--c--CCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc---------ccccCCCceeEEEEcCCCCeEEE
Q psy950          297 --SSAS--S--NLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS---------SASSNLTNVVGVEFDYADDKILF  361 (407)
Q Consensus       297 --~~~~--~--~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~---------rl~~~l~~P~~iavdp~~g~lyw  361 (407)
                        ...+  .  -...|.||++ | .++||.++... ++|.++++++..         .+.....+|++|+++|. |.||.
T Consensus       255 ~~~~~p~~~~~~~~ap~G~~~-~-~G~l~v~~~~~-~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd-G~lyv  330 (352)
T 2ism_A          255 PRYRDPLYFWPQGFPPGNLAF-F-RGDLYVAGLRG-QALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPD-GALYV  330 (352)
T ss_dssp             TTSCCCSEECTTCCCEEEEEE-E-TTEEEEEETTT-TEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTT-SCEEE
T ss_pred             CCCcCCeEecCCCCCCcceEE-E-CCEEEEEECCC-CEEEEEEECCCCcceeecchheecccCCCeeEEEECCC-CcEEE
Confidence              0001  1  1126889999 3 67999999988 799999887432         13345689999999994 79999


Q ss_pred             EeCCCC
Q psy950          362 TQIRPW  367 (407)
Q Consensus       362 td~~~~  367 (407)
                      +++...
T Consensus       331 ~~~~~~  336 (352)
T 2ism_A          331 TTSNRD  336 (352)
T ss_dssp             EECSTT
T ss_pred             EEeCCC
Confidence            998654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.43  E-value=1.5e-09  Score=103.43  Aligned_cols=268  Identities=13%  Similarity=0.113  Sum_probs=176.2

Q ss_pred             CCcceEEEeCCCCEEEEEEcCC-----CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecC
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQ-----YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN  107 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~-----~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~d  107 (407)
                      ..|.+++++|..++||+++.+.     ..+|...+.+.......+.. -..|.++++++.+++||+++...+.|..++..
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            4689999999999999998752     34899999876554444442 24699999999999999999999999999987


Q ss_pred             CCeE-EEEc-cCC--------CCceEEEEeC--CEEEEEeCC-CCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeec
Q psy950          108 GGNR-QIIR-RNL--------PNPMGIAVHK--SDVYWVDRN-LRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIV  174 (407)
Q Consensus       108 G~~~-~~~~-~~~--------~~P~~lav~~--~~lYwtd~~-~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~  174 (407)
                      .... ..+. ...        .+|.++++..  +++|.+++. .+.|...+..+ +  .....+...-..|.+       
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~-~--~~~~~~~~~~~~~~~-------  189 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN-I--KLKTAIQNTGKMSTG-------  189 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT-T--EEEEEECCCCTTCCC-------
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC-C--ceEEEecCCCCccce-------
Confidence            5544 3333 111        1378899965  689999854 56788888664 1  111111000000111       


Q ss_pred             CCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec-ccceEEeecCCCCCe
Q psy950          175 NQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST-RTEIRALHLDPTLTA  253 (407)
Q Consensus       175 ~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~-~~~I~~i~l~~~~~~  253 (407)
                                          +++                       .+|++       +|+++. ...|..+.+......
T Consensus       190 --------------------~~~-----------------------s~dg~-------~l~~~~~~~~i~~~d~~~~~~~  219 (353)
T 3vgz_A          190 --------------------LAL-----------------------DSEGK-------RLYTTNADGELITIDTADNKIL  219 (353)
T ss_dssp             --------------------CEE-----------------------ETTTT-------EEEEECTTSEEEEEETTTTEEE
T ss_pred             --------------------EEE-----------------------CCCCC-------EEEEEcCCCeEEEEECCCCeEE
Confidence                                111                       11221       111111 122333332221110


Q ss_pred             eeeEee---cCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeCCCCCe
Q psy950          254 VPFKTV---SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIRPWAK  328 (407)
Q Consensus       254 ~~~~~~---~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~~~~~~  328 (407)
                      . ....   .....+.++++++.++++|+++... +.|..++..+.....  .++ .+.++++++.++.||.++... ++
T Consensus       220 ~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~v~~~d~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~-~~  295 (353)
T 3vgz_A          220 S-RKKLLDDGKEHFFINISLDTARQRAFITDSKA-AEVLVVDTRNGNILAKVAAP-ESLAVLFNPARNEAYVTHRQA-GK  295 (353)
T ss_dssp             E-EEECCCSSSCCCEEEEEEETTTTEEEEEESSS-SEEEEEETTTCCEEEEEECS-SCCCEEEETTTTEEEEEETTT-TE
T ss_pred             E-EEEcCCCCCCcccceEEECCCCCEEEEEeCCC-CEEEEEECCCCcEEEEEEcC-CCceEEECCCCCEEEEEECCC-Ce
Confidence            0 0111   0123466789999999999999887 889999987665443  455 678999999999999999888 89


Q ss_pred             EEEEECCCCcc--cccCCCceeEEEEcCCCCeEEEEeCC
Q psy950          329 IAWIPTTNPSS--ASSNLTNVVGVEFDYADDKILFTQIR  365 (407)
Q Consensus       329 I~v~~~~~~~r--l~~~l~~P~~iavdp~~g~lywtd~~  365 (407)
                      |.++++.....  ....-..|.+++++|...+||.+...
T Consensus       296 v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          296 VSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             EEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            99999876653  23344689999999998899999753

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.38  E-value=1.5e-10  Score=116.91  Aligned_cols=115  Identities=11%  Similarity=0.054  Sum_probs=88.5

Q ss_pred             CCCcceEEE-------eCCCCEEEEEEcCC-----CCeEEEEeCC--CCCe-----EEEEeCCCCCceeEEEeCCCCeEE
Q psy950           32 RSANTTSPF-------SPLPRLLYWIDYGQ-----YPRIGKSYLD--GSKW-----TSIVSNGISMPRDLTIDMQTHDVY   92 (407)
Q Consensus        32 ~~~P~~iav-------dp~~g~lywtd~~~-----~~~I~r~~~d--G~~~-----~~l~~~~~~~P~glaiD~~~~~lY   92 (407)
                      +..|++|++       |+..++||.+|+..     ...|.+..-+  |.-.     ..+.  ....|+|+++|+.+++||
T Consensus       185 ~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LY  262 (496)
T 3kya_A          185 TNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPINGELY  262 (496)
T ss_dssp             CSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEE
T ss_pred             cCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec--cCCCceEEEEcCCCCeEE
Confidence            457999999       99988999999975     2357777433  3332     2333  356899999999999999


Q ss_pred             EEeCCCCeEEEEecC-------CCeE-------------EEE-ccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCC
Q psy950           93 WVDAKLDLIQKISYN-------GGNR-------------QII-RRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus        93 w~d~~~~~I~~~~~d-------G~~~-------------~~~-~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~  148 (407)
                      ++|...++|.+++++       +...             +++ ......|++|+++.  +.||++|+..++|.+++.++
T Consensus       263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence            999999999999997       3222             222 24456799999987  46999999999999988765

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.38  E-value=4.8e-10  Score=109.18  Aligned_cols=252  Identities=12%  Similarity=0.029  Sum_probs=159.8

Q ss_pred             cceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEe-----CCCCCceeEEEeCC---CCeEEEE
Q psy950           23 KKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVS-----NGISMPRDLTIDMQ---THDVYWV   94 (407)
Q Consensus        23 ~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~-----~~~~~P~glaiD~~---~~~lYw~   94 (407)
                      .+..++..++..|++|+++|. |.||+++..  .+|.+.+.+|.  +.+..     .+...|.||++++.   +++||++
T Consensus        19 ~~~~~va~~l~~P~~ia~~pd-G~l~V~e~~--g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~   93 (354)
T 3a9g_A           19 FKISEVASDLEVPWSIAPLGG-GRYLVTERP--GRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLY   93 (354)
T ss_dssp             EEEEEEECSCSCEEEEEEEET-TEEEEEETT--TEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             eEEEEEeCCCCCCeEEEEcCC-CeEEEEeCC--CEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence            455566778999999999996 789999986  59999987776  33332     24567999999998   8999999


Q ss_pred             eCC---C----CeEEEEecCCC-----eEEEEc-----cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccE
Q psy950           95 DAK---L----DLIQKISYNGG-----NRQIIR-----RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPT  156 (407)
Q Consensus        95 d~~---~----~~I~~~~~dG~-----~~~~~~-----~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~  156 (407)
                      +..   .    ++|.++++++.     ..+++.     .....|.+|++.. ++||++.......     ..        
T Consensus        94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~-----~~--------  160 (354)
T 3a9g_A           94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADP-----RL--------  160 (354)
T ss_dssp             EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCG-----GG--------
T ss_pred             EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCC-----cc--------
Confidence            874   3    68999998876     234432     2344678899876 7899986432210     00        


Q ss_pred             EcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeee
Q psy950          157 PIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVF  236 (407)
Q Consensus       157 ~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~  236 (407)
                                        .|.     +-..  ++.                   .      +.+.+|+.- ....+|   
T Consensus       161 ------------------~~d-----~~~~--~G~-------------------I------~ri~~dG~~-p~~npf---  186 (354)
T 3a9g_A          161 ------------------AQD-----LSSL--AGK-------------------I------LRVDEEGRP-PADNPF---  186 (354)
T ss_dssp             ------------------GTC-----TTCC--SSE-------------------E------EEECTTSCC-CTTSSS---
T ss_pred             ------------------ccC-----CCCC--CeE-------------------E------EEEcCCCCC-CCCCCC---
Confidence                              000     0000  000                   0      001111110 000000   


Q ss_pred             ecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecC--CceEEEEeCCCC---------c-----ccc
Q psy950          237 STRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRP--WAKIAWIPTTNP---------S-----SAS  300 (407)
Q Consensus       237 s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~--~~~I~~~~~~~~---------~-----~~~  300 (407)
                      + .               +.....+++++.+|++|+.++.||++|...  ...|.++.-.+.         .     ..+
T Consensus       187 ~-~---------------~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p  250 (354)
T 3a9g_A          187 P-N---------------SPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDP  250 (354)
T ss_dssp             T-T---------------CCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred             C-C---------------CcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCC
Confidence            0 0               011123567888999999889999999865  134655542210         0     001


Q ss_pred             --c---CCCCccEEEE-------eccCCeEEEEeCCCCCeEEEEECCCCc------cccc-CCCceeEEEEcCCCCeEEE
Q psy950          301 --S---NLTNVVGVEF-------DYADDKILFTQIRPWAKIAWIPTTNPS------SASS-NLTNVVGVEFDYADDKILF  361 (407)
Q Consensus       301 --~---~~~~~~glAv-------Dwi~~~LYwtd~~~~~~I~v~~~~~~~------rl~~-~l~~P~~iavdp~~g~lyw  361 (407)
                        .   ....|.||++       +| .++||+++... ++|.++++++..      ++.. ...+|++|+++|. |.||.
T Consensus       251 ~~~~~~~~~ap~G~~~y~g~~fp~~-~G~l~v~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pD-G~lyv  327 (354)
T 3a9g_A          251 VIDTGSETWAPSGASFVHGDMFPGL-RGWLLIACLRG-SMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDD-GGILI  327 (354)
T ss_dssp             SEECTTCCCCEEEEEECCSSSCGGG-TTEEEEEETTT-TEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTT-SCEEE
T ss_pred             EeecCCCCcCCcceEEECCCCCccc-CCcEEEEEcCC-CEEEEEEECCCCcccceeeeccCCCCCeeEEEECCC-CcEEE
Confidence              1   1237999999       65 56999999988 899999988532      2333 3579999999995 79999


Q ss_pred             EeCC
Q psy950          362 TQIR  365 (407)
Q Consensus       362 td~~  365 (407)
                      +++.
T Consensus       328 ~~~~  331 (354)
T 3a9g_A          328 STSN  331 (354)
T ss_dssp             EECT
T ss_pred             EEeC
Confidence            9974

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.37  E-value=3.4e-10  Score=108.00  Aligned_cols=239  Identities=11%  Similarity=0.118  Sum_probs=150.6

Q ss_pred             EEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCC-------------------CCCceeEEEeC
Q psy950           26 KLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNG-------------------ISMPRDLTIDM   86 (407)
Q Consensus        26 ~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~-------------------~~~P~glaiD~   86 (407)
                      ..+...+..|.+|++|+. |.+||++... .+|.+.+.++...+.+....                   ...|.||++|+
T Consensus        12 i~~~g~~~~p~~i~~d~~-g~~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~   89 (322)
T 2fp8_A           12 ILIEAPSYAPNSFTFDST-NKGFYTSVQD-GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL   89 (322)
T ss_dssp             EEEECSSSCCCCEECCTT-CSSEEEECTT-SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET
T ss_pred             eecCCccCCceEEEEcCC-CCEEEEEcCC-CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC
Confidence            334455789999999997 7888888765 49999998876665554211                   23699999998


Q ss_pred             CCCeEEEEeCCCCeEEEEecCCCeEEEEc-----cCCCCceEEEEeC--CEEEEEeCCC-----------------CeEE
Q psy950           87 QTHDVYWVDAKLDLIQKISYNGGNRQIIR-----RNLPNPMGIAVHK--SDVYWVDRNL-----------------RTVY  142 (407)
Q Consensus        87 ~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-----~~~~~P~~lav~~--~~lYwtd~~~-----------------~~I~  142 (407)
                      ..++||++|... .|.+++.++...+.+.     ..+..|.+|+++.  +.||++|...                 +.|+
T Consensus        90 ~~g~l~v~d~~~-~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  168 (322)
T 2fp8_A           90 QNNQLYIVDCYY-HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLI  168 (322)
T ss_dssp             TTTEEEEEETTT-EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred             CCCcEEEEECCC-CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEE
Confidence            778999999864 5888888865554443     2356799999986  7999999763                 2344


Q ss_pred             EEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccC
Q psy950          143 KASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSAS  222 (407)
Q Consensus       143 ~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~  222 (407)
                      +.+..+ +   ..+.+...+.                                                  .|.|..+.+
T Consensus       169 ~~d~~~-~---~~~~~~~~~~--------------------------------------------------~p~gia~~~  194 (322)
T 2fp8_A          169 KYDPST-K---ETTLLLKELH--------------------------------------------------VPGGAEVSA  194 (322)
T ss_dssp             EEETTT-T---EEEEEEEEES--------------------------------------------------CCCEEEECT
T ss_pred             EEeCCC-C---EEEEeccCCc--------------------------------------------------cCcceEECC
Confidence            444332 1   1111111111                                                  122222233


Q ss_pred             CCCcccccceeeeeec--ccceEEeecCCCCC--eeeeEeecCCcceEEEEEEcCCCEEEEEEec----------CCceE
Q psy950          223 DPKKCTTMDEYLVFST--RTEIRALHLDPTLT--AVPFKTVSNLTNVVGVEFDYADDKILFTQIR----------PWAKI  288 (407)
Q Consensus       223 d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~--~~~~~~~~~~~~~~ald~d~~~~~lywsd~~----------~~~~I  288 (407)
                      |+.       +|+++.  ...|..+.+.....  ...+....  . +.++.+|..+ .||+++..          . ..|
T Consensus       195 dg~-------~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~--g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~-~~v  262 (322)
T 2fp8_A          195 DSS-------FVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP--N-PGNIKRNADG-HFWVSSSEELDGNMHGRVD-PKG  262 (322)
T ss_dssp             TSS-------EEEEEEGGGTEEEEEESSSTTTTCEEEEEECS--S-EEEEEECTTS-CEEEEEEEETTSSTTSCEE-EEE
T ss_pred             CCC-------EEEEEeCCCCeEEEEECCCCcCCccceEEeCC--C-CCCeEECCCC-CEEEEecCcccccccCCCc-cEE
Confidence            332       233332  34677777654211  11111111  2 7889999765 59999866          3 568


Q ss_pred             EEEeCCCCcccc-----c--CCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCC
Q psy950          289 AWIPTTNPSSAS-----S--NLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNP  337 (407)
Q Consensus       289 ~~~~~~~~~~~~-----~--~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~  337 (407)
                      .+++-+|.....     +  +. .+.+++.+  .++||+++... +.|.+++++..
T Consensus       263 ~~~d~~G~~~~~~~~~~g~~~~-~~~~~~~~--~g~L~v~~~~~-~~i~~~~~~~~  314 (322)
T 2fp8_A          263 IKFDEFGNILEVIPLPPPFAGE-HFEQIQEH--DGLLYIGTLFH-GSVGILVYDKK  314 (322)
T ss_dssp             EEECTTSCEEEEEECCTTTTTS-CCCEEEEE--TTEEEEECSSC-SEEEEEEC---
T ss_pred             EEECCCCCEEEEEECCCCCccc-cceEEEEe--CCEEEEeecCC-CceEEEecccc
Confidence            888877653321     1  34 68888875  78999999988 89999987654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.34  E-value=2.6e-09  Score=99.23  Aligned_cols=229  Identities=15%  Similarity=0.164  Sum_probs=148.2

Q ss_pred             CCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCC
Q psy950           30 SFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGG  109 (407)
Q Consensus        30 ~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~  109 (407)
                      .....|.+|++|+. |.||+++.+.. +|.+.+.+|.-...........|.+|++|+ .++||+++...+.|.+++.+|.
T Consensus        59 ~~~~~~~~i~~~~~-g~l~v~~~~~~-~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~  135 (300)
T 2qc5_A           59 TPDAKVMCLIVSSL-GDIWFTENGAN-KIGKLSKKGGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTADGT  135 (300)
T ss_dssp             STTCCEEEEEECTT-SCEEEEETTTT-EEEEECTTSCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTTSC
T ss_pred             CCCCcceeEEECCC-CCEEEEecCCC-eEEEECCCCCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCCCC
Confidence            34567999999975 78999987654 899999986543222222346899999997 6789999998899999999966


Q ss_pred             eEEEEc-cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcc--cCCCCceeeEEeeecCCCCCCCCCcc
Q psy950          110 NRQIIR-RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIR--TGLSGLRDIAIFDIVNQPPDENNPCF  185 (407)
Q Consensus       110 ~~~~~~-~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~--~~~~~p~~i~i~~~~~qp~~~~n~C~  185 (407)
                      ...... .....|.+|+++. +.||+++...+.|.+.+..+  .   ...+.  .....|.+|.+               
T Consensus       136 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g--~---~~~~~~~~~~~~~~~i~~---------------  195 (300)
T 2qc5_A          136 IYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTG--K---LEEYPLPTNAAAPVGITS---------------  195 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC--C---EEEEECSSTTCCEEEEEE---------------
T ss_pred             EEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCC--c---EEEeeCCCCCCCcceEEE---------------
Confidence            554323 3567899999986 78999999888999988742  2   11111  11111222211               


Q ss_pred             CCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCCeeeeEee-cCC
Q psy950          186 RTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLTAVPFKTV-SNL  262 (407)
Q Consensus       186 ~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~~~~~~~~-~~~  262 (407)
                                                         .+++.        |++++  ...|..+..... .. . ..+ ...
T Consensus       196 -----------------------------------d~~g~--------l~v~~~~~~~i~~~~~~g~-~~-~-~~~~~~~  229 (300)
T 2qc5_A          196 -----------------------------------GNDGA--------LWFVEIMGNKIGRITTTGE-IS-E-YDIPTPN  229 (300)
T ss_dssp             -----------------------------------CTTSS--------EEEEETTTTEEEEECTTCC-EE-E-EECSSTT
T ss_pred             -----------------------------------CCCCC--------EEEEccCCCEEEEEcCCCc-EE-E-EECCCCC
Confidence                                               11111        22222  123444443111 10 0 111 234


Q ss_pred             cceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEEC
Q psy950          263 TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPT  334 (407)
Q Consensus       263 ~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~  334 (407)
                      ..+.++.+|..+ +||+++... +.|.+++.++.....    ... .|.+|++|.- ++||+++. .  .|.+++.
T Consensus       230 ~~~~~i~~d~~g-~l~v~~~~~-~~i~~~~~~g~~~~~~~~~~~~-~~~~i~~~~~-g~l~v~~~-~--~i~~~~p  298 (300)
T 2qc5_A          230 ARPHAITAGKNS-EIWFTEWGA-NQIGRITNDNTIQEYQLQTENA-EPHGITFGKD-GSVWFALK-C--KIGKLNL  298 (300)
T ss_dssp             CCEEEEEECSTT-CEEEEETTT-TEEEEECTTSCEEEEECCSTTC-CCCCEEECTT-SCEEEECS-S--EEEEEEE
T ss_pred             CCceEEEECCCC-CEEEeccCC-CeEEEECCCCcEEEEECCccCC-ccceeEeCCC-CCEEEEcc-C--ceEEeCC
Confidence            567889999764 599999877 789999886543221    234 8999999976 56999987 4  5777764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.32  E-value=5.1e-09  Score=97.20  Aligned_cols=230  Identities=15%  Similarity=0.155  Sum_probs=147.9

Q ss_pred             CCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCe
Q psy950           31 FRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN  110 (407)
Q Consensus        31 ~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~  110 (407)
                      ....|.+|++|+. |.+|+++.... .|.+.+.+|.-...........|.+|++|+ .++||+++...+.|.+++.+|..
T Consensus        55 ~~~~~~~i~~~~~-g~l~v~~~~~~-~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~  131 (299)
T 2z2n_A           55 PDAKVMCLTISSD-GEVWFTENAAN-KIGRITKKGIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITDDGKI  131 (299)
T ss_dssp             TTCCEEEEEECTT-SCEEEEETTTT-EEEEECTTSCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCE
T ss_pred             ccCceeeEEECCC-CCEEEeCCCCC-eEEEECCCCcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECCCCCE
Confidence            4567999999985 78999987653 899999886532222222355899999997 57899999888999999997765


Q ss_pred             EEEEc-cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEc--ccCCCCceeeEEeeecCCCCCCCCCccC
Q psy950          111 RQIIR-RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPI--RTGLSGLRDIAIFDIVNQPPDENNPCFR  186 (407)
Q Consensus       111 ~~~~~-~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i--~~~~~~p~~i~i~~~~~qp~~~~n~C~~  186 (407)
                      ..... .....|.+|+++. +.+|+++...+.|.+.+. . +.   ...+  ......|.+|.                 
T Consensus       132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~---~~~~~~~~~~~~~~~i~-----------------  189 (299)
T 2z2n_A          132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S-GD---ITEFKIPTPASGPVGIT-----------------  189 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CC---EEEEECSSTTCCEEEEE-----------------
T ss_pred             EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C-Cc---EEEeeCCCCCCcceeEE-----------------
Confidence            54433 3567899999986 799999988889999887 3 22   1111  00111111111                 


Q ss_pred             CCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCCeeeeEee-cCCc
Q psy950          187 TGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLTAVPFKTV-SNLT  263 (407)
Q Consensus       187 ~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~~~~~~~~-~~~~  263 (407)
                                +                       .+++.        |++++  ...|..+.. .....  .... ....
T Consensus       190 ----------~-----------------------~~~g~--------l~v~~~~~~~i~~~~~-~g~~~--~~~~~~~~~  225 (299)
T 2z2n_A          190 ----------K-----------------------GNDDA--------LWFVEIIGNKIGRITT-SGEIT--EFKIPTPNA  225 (299)
T ss_dssp             ----------E-----------------------CTTSS--------EEEEETTTTEEEEECT-TCCEE--EEECSSTTC
T ss_pred             ----------E-----------------------CCCCC--------EEEEccCCceEEEECC-CCcEE--EEECCCCCC
Confidence                      1                       11111        22222  234444444 11111  1111 1345


Q ss_pred             ceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCC
Q psy950          264 NVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTN  336 (407)
Q Consensus       264 ~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~  336 (407)
                      .+.++.+|..+ +||+++... +.|.+++.++.....    ... .|.+|++  -.++||+++. . +.|.+++...
T Consensus       226 ~~~~i~~~~~g-~l~v~~~~~-~~i~~~d~~g~~~~~~~~~~~~-~~~~i~~--~~g~l~v~~~-~-~~l~~~~~~~  295 (299)
T 2z2n_A          226 RPHAITAGAGI-DLWFTEWGA-NKIGRLTSNNIIEEYPIQIKSA-EPHGICF--DGETIWFAME-C-DKIGKLTLIK  295 (299)
T ss_dssp             CEEEEEECSTT-CEEEEETTT-TEEEEEETTTEEEEEECSSSSC-CEEEEEE--CSSCEEEEET-T-TEEEEEEEC-
T ss_pred             CceeEEECCCC-CEEEeccCC-ceEEEECCCCceEEEeCCCCCC-ccceEEe--cCCCEEEEec-C-CcEEEEEcCc
Confidence            67889999764 599998776 789998886532211    234 8999999  6788999987 3 5788876543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.28  E-value=1.5e-09  Score=104.11  Aligned_cols=289  Identities=9%  Similarity=0.040  Sum_probs=173.3

Q ss_pred             EEEEEcCC----CCeEEEEeCCCCCeEE-EE----eCCC-CCceeEEEeCCCCeEEEEeCCCCeEEEEecCC-CeEEEEc
Q psy950           47 LYWIDYGQ----YPRIGKSYLDGSKWTS-IV----SNGI-SMPRDLTIDMQTHDVYWVDAKLDLIQKISYNG-GNRQIIR  115 (407)
Q Consensus        47 lywtd~~~----~~~I~r~~~dG~~~~~-l~----~~~~-~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG-~~~~~~~  115 (407)
                      +|.++.+.    ...|...+.+....+. +.    ...+ ..|.+|++|  +++||++....+.|.+++... .....+ 
T Consensus         4 ~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i-   80 (328)
T 3dsm_A            4 LFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRI-   80 (328)
T ss_dssp             EEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEE-
T ss_pred             EEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEc-
Confidence            56666541    3467776665322111 10    0123 258899997  589999999999999999974 443444 


Q ss_pred             cCCCCceEEEE-eCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccc
Q psy950          116 RNLPNPMGIAV-HKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQ  194 (407)
Q Consensus       116 ~~~~~P~~lav-~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~  194 (407)
                      .....|.+|++ .++++|+++...+.|.+++..+ +  .....+..+..          ..+   ...|         .+
T Consensus        81 ~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-~--~~~~~i~~g~~----------~~~---~~~p---------~~  135 (328)
T 3dsm_A           81 TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT-Y--EITGYIECPDM----------DME---SGST---------EQ  135 (328)
T ss_dssp             ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT-T--EEEEEEECTTC----------CTT---TCBC---------CC
T ss_pred             CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC-C--eEEEEEEcCCc----------ccc---CCCc---------ce
Confidence            45789999999 6689999997778899988765 2  11111110000          000   0011         11


Q ss_pred             cceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec---ccceEEeecCCCCCeeeeEeecCCcceEEEEEE
Q psy950          195 LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST---RTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFD  271 (407)
Q Consensus       195 lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~---~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d  271 (407)
                      +++.  +                      +        .|+++.   ...|..+.+....   ....+.....+.++.+|
T Consensus       136 i~~~--~----------------------~--------~lyv~~~~~~~~v~viD~~t~~---~~~~i~~g~~p~~i~~~  180 (328)
T 3dsm_A          136 MVQY--G----------------------K--------YVYVNCWSYQNRILKIDTETDK---VVDELTIGIQPTSLVMD  180 (328)
T ss_dssp             EEEE--T----------------------T--------EEEEEECTTCCEEEEEETTTTE---EEEEEECSSCBCCCEEC
T ss_pred             EEEE--C----------------------C--------EEEEEcCCCCCEEEEEECCCCe---EEEEEEcCCCccceEEc
Confidence            1110  0                      0        122221   2234444433221   11122223445677788


Q ss_pred             cCCCEEEEEEecC---------CceEEEEeCCCCcccc--cC--CCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc
Q psy950          272 YADDKILFTQIRP---------WAKIAWIPTTNPSSAS--SN--LTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS  338 (407)
Q Consensus       272 ~~~~~lywsd~~~---------~~~I~~~~~~~~~~~~--~~--~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~  338 (407)
                      +. +++|++....         .+.|++++..+.....  .+  +..|.+||+++-++.||+++.    +|.+++..+..
T Consensus       181 ~d-G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~----~v~~~d~~t~~  255 (328)
T 3dsm_A          181 KY-NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN----DIWRMPVEADR  255 (328)
T ss_dssp             TT-SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS----SEEEEETTCSS
T ss_pred             CC-CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc----EEEEEECCCCc
Confidence            64 5688776532         1579999887655432  22  337999999999999999987    48999987654


Q ss_pred             c----ccc-CCCceeEEEEcCCCCeEEEEeCCCCCcccccCCCCCCCcceeEEEeCCCccceeeccchhhcc
Q psy950          339 S----ASS-NLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILSRGKDEKAKIENEQDLGR  405 (407)
Q Consensus       339 r----l~~-~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  405 (407)
                      .    ... ....|.+|++||..|+||.+++.+-..=..+...+++|..+.++.+..  .|-.+.-+-+|.|
T Consensus       256 ~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G~--~P~~~~~~~~~~~  325 (328)
T 3dsm_A          256 VPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGI--IPGAFCWKLEHHH  325 (328)
T ss_dssp             CCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEEE--SEEEEEEECCCCC
T ss_pred             eeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEecc--CcceEEEeccccc
Confidence            2    222 257899999999999999999532111122334566788888887644  4777776666665

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.28  E-value=4.7e-09  Score=101.17  Aligned_cols=248  Identities=12%  Similarity=0.093  Sum_probs=158.6

Q ss_pred             CCcceEEEeCCCCEEEEEEcC--C-CCeEEEEeCCCCCeEEE------EeCCCCCceeEEEeCCCCeEEEEeCC-----C
Q psy950           33 SANTTSPFSPLPRLLYWIDYG--Q-YPRIGKSYLDGSKWTSI------VSNGISMPRDLTIDMQTHDVYWVDAK-----L   98 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~--~-~~~I~r~~~dG~~~~~l------~~~~~~~P~glaiD~~~~~lYw~d~~-----~   98 (407)
                      ..|.+|+++|. |++|.+...  . ..+|...+ +|.-. .+      ....+..|.++++|+. ++|||+|..     .
T Consensus        17 ~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~-~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELT-QDGLI-PFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEE-TTEEE-ESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHHHHTSC
T ss_pred             CCcceEEECCC-CCEEEEeCCCCCCceEEEEEC-CCCee-cCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCCCcCCC
Confidence            67999999987 789999632  1 14788877 65311 00      0123568999999996 789999987     5


Q ss_pred             CeEEEEecCCCe-EEEEc-c-----CCCCceEEEEe--CCEEEEEeC---CCCeEEEEecCCCCCCcccEEcccCCCCce
Q psy950           99 DLIQKISYNGGN-RQIIR-R-----NLPNPMGIAVH--KSDVYWVDR---NLRTVYKASKLASTNITLPTPIRTGLSGLR  166 (407)
Q Consensus        99 ~~I~~~~~dG~~-~~~~~-~-----~~~~P~~lav~--~~~lYwtd~---~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~  166 (407)
                      .+|.+++++... .+.+. .     ....|.+|+++  ++.+|.+|.   ..+.|.+.+..+ +.  ...++..      
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~-g~--~~r~~~~------  163 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT-GL--AARVLQG------  163 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT-CC--EEEECTT------
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC-CC--EEEEecC------
Confidence            899999987444 34332 1     12467999998  479999998   677888888764 21  1111110      


Q ss_pred             eeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccc---cCCCCcccccceeeeeecccceE
Q psy950          167 DIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS---ASDPKKCTTMDEYLVFSTRTEIR  243 (407)
Q Consensus       167 ~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l---~~d~~~C~~~~~~Ll~s~~~~I~  243 (407)
                           |+...|    .+.                        .+..   .|..+   .++++                +.
T Consensus       164 -----~~~~~~----~~~------------------------~~~~---~g~~~~~~~~~g~----------------~~  191 (343)
T 2qe8_A          164 -----YPGIAP----EDI------------------------DLVI---DGVPVQIGQPDGT----------------VI  191 (343)
T ss_dssp             -----CTTTSC----CSC------------------------CCEE---TTEECBEECTTSC----------------EE
T ss_pred             -----CCcccc----ccc------------------------ceeE---CCEEEEeccCCCc----------------ee
Confidence                 000000    000                        0000   00000   01110                00


Q ss_pred             EeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCC----CC--ccc-----c---cCCCCccEE
Q psy950          244 ALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTT----NP--SSA-----S---SNLTNVVGV  309 (407)
Q Consensus       244 ~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~----~~--~~~-----~---~~~~~~~gl  309 (407)
                                    +.  ...+.+|++++.++.||+++... .++++++.+    +.  ...     .   ..+ .|.||
T Consensus       192 --------------~~--~~~~~gia~s~dg~~ly~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgi  253 (343)
T 2qe8_A          192 --------------RP--HLGVNGIVLDAENEWLYLSPMHS-TSMYRIKSADLSNLQLTDAELGSKIERYSEKP-ICDGI  253 (343)
T ss_dssp             --------------CC--CCCEEEEEECTTSCEEEEEESSC-SEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCE
T ss_pred             --------------ce--ecccceeEeccCCCEEEEEeCCC-CeEEEEEHHHhcCCCCChhhhhcceEecccCC-CCceE
Confidence                          00  01245788999899999999888 789998742    11  000     0   233 78999


Q ss_pred             EEeccCCeEEEEeCCCCCeEEEEEC-CCCcc-ccc--CCCceeEEEEcCCCCeEEEEeCCC
Q psy950          310 EFDYADDKILFTQIRPWAKIAWIPT-TNPSS-ASS--NLTNVVGVEFDYADDKILFTQIRP  366 (407)
Q Consensus       310 AvDwi~~~LYwtd~~~~~~I~v~~~-~~~~r-l~~--~l~~P~~iavdp~~g~lywtd~~~  366 (407)
                      |+|.- ++||.++... ++|.+++. +|... +..  .+..|.++++++. |.||.++...
T Consensus       254 a~d~~-G~l~va~~~~-~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~-g~l~v~~~~~  311 (343)
T 2qe8_A          254 SIDKD-HNIYVGDLAH-SAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD-GYLYFDCNQL  311 (343)
T ss_dssp             EECTT-CCEEEEEGGG-TEEEEEETTTTEEEEEEECGGGSCEEEEEECTT-SCEEEEECCG
T ss_pred             EECCC-CCEEEEccCC-CeEEEEECCCCCEEEEEECCceecCCeeEECCC-CcEEEEeCcc
Confidence            99985 7999999999 89999998 66533 332  3789999999985 8999998643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.27  E-value=3.2e-09  Score=98.78  Aligned_cols=115  Identities=14%  Similarity=0.103  Sum_probs=92.4

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR  111 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~  111 (407)
                      +..|.+|++++..|.||.++......|.+.+.+|.....+.......|.+|++|+. ++||+++...+.|...+.+|...
T Consensus        76 ~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~  154 (286)
T 1q7f_A           76 LLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNK-GRIIVVECKVMRVIIFDQNGNVL  154 (286)
T ss_dssp             BSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTT-SCEEEEETTTTEEEEECTTSCEE
T ss_pred             ccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCC-CCEEEEECCCCEEEEEcCCCCEE
Confidence            45799999987889999999742248999998887655554344568999999995 57999999999999999998776


Q ss_pred             EEEc--cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecC
Q psy950          112 QIIR--RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKL  147 (407)
Q Consensus       112 ~~~~--~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~  147 (407)
                      ..+.  ..+..|.+|++++ +.+|+++...+.|.+.+..
T Consensus       155 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~  193 (286)
T 1q7f_A          155 HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE  193 (286)
T ss_dssp             EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred             EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC
Confidence            6554  4567899999987 7899999887788777654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.27  E-value=6.6e-09  Score=97.91  Aligned_cols=238  Identities=6%  Similarity=0.005  Sum_probs=155.6

Q ss_pred             eEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEE
Q psy950           25 KKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKI  104 (407)
Q Consensus        25 ~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~  104 (407)
                      +.++.....-+.|.+.||..+.|||+|.... +|.+.+.++...+.+..  -..|.+|++|+.++ ||++.  .+.|...
T Consensus         5 ~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~-~i~~~d~~~~~~~~~~~--~~~~~~i~~~~dG~-l~v~~--~~~l~~~   78 (297)
T 3g4e_A            5 ECVLPENCRCGESPVWEEVSNSLLFVDIPAK-KVCRWDSFTKQVQRVTM--DAPVSSVALRQSGG-YVATI--GTKFCAL   78 (297)
T ss_dssp             EEEECCCCSBEEEEEEETTTTEEEEEETTTT-EEEEEETTTCCEEEEEC--SSCEEEEEEBTTSS-EEEEE--TTEEEEE
T ss_pred             EEEeccCCccccCCeEECCCCEEEEEECCCC-EEEEEECCCCcEEEEeC--CCceEEEEECCCCC-EEEEE--CCeEEEE
Confidence            3456667778999999999999999999865 99999999776544332  24799999998655 77776  4689999


Q ss_pred             ecCCCeEEEEcc-----CCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCC
Q psy950          105 SYNGGNRQIIRR-----NLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPP  178 (407)
Q Consensus       105 ~~dG~~~~~~~~-----~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~  178 (407)
                      +.++...+.+..     ....|.+++++. +.+|+++......      .          . ... ...-.+|       
T Consensus        79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~------~----------~-~~~-~~~~~l~-------  133 (297)
T 3g4e_A           79 NWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA------P----------A-VLE-RHQGALY-------  133 (297)
T ss_dssp             ETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB------T----------T-BCC-TTCEEEE-------
T ss_pred             ECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc------c----------c-ccc-CCCcEEE-------
Confidence            998666554431     234577888876 6777765322100      0          0 000 0000000       


Q ss_pred             CCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEe
Q psy950          179 DENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKT  258 (407)
Q Consensus       179 ~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~  258 (407)
                                                              .+.++++                +..+             
T Consensus       134 ----------------------------------------~~d~~g~----------------~~~~-------------  144 (297)
T 3g4e_A          134 ----------------------------------------SLFPDHH----------------VKKY-------------  144 (297)
T ss_dssp             ----------------------------------------EECTTSC----------------EEEE-------------
T ss_pred             ----------------------------------------EEECCCC----------------EEEE-------------
Confidence                                                    0111110                0000             


Q ss_pred             ecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCC--CCcc---c--cc---CCCCccEEEEeccCCeEEEEeCCCCCe
Q psy950          259 VSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTT--NPSS---A--SS---NLTNVVGVEFDYADDKILFTQIRPWAK  328 (407)
Q Consensus       259 ~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~--~~~~---~--~~---~~~~~~glAvDwi~~~LYwtd~~~~~~  328 (407)
                      ......+.++.+++.++.|||++... ++|.+.+++  ....   .  ..   ....|.||++|.-+ +||.++... ++
T Consensus       145 ~~~~~~pngi~~spdg~~lyv~~~~~-~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~-~~  221 (297)
T 3g4e_A          145 FDQVDISNGLDWSLDHKIFYYIDSLS-YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNG-GR  221 (297)
T ss_dssp             EEEESBEEEEEECTTSCEEEEEEGGG-TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETT-TE
T ss_pred             eeccccccceEEcCCCCEEEEecCCC-CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCC-CE
Confidence            01122345788888899999999887 788888764  1111   1  11   11279999999875 899999887 78


Q ss_pred             EEEEECC-CCcc--cccCCCceeEEEEc-CCCCeEEEEeCC
Q psy950          329 IAWIPTT-NPSS--ASSNLTNVVGVEFD-YADDKILFTQIR  365 (407)
Q Consensus       329 I~v~~~~-~~~r--l~~~l~~P~~iavd-p~~g~lywtd~~  365 (407)
                      |.+++.+ |...  +.....+|.++++. |..+.||.|...
T Consensus       222 v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          222 VIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             EEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence            9999987 4422  33345789999998 888899999853

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.20  E-value=3.5e-08  Score=92.34  Aligned_cols=241  Identities=11%  Similarity=0.061  Sum_probs=148.7

Q ss_pred             cceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEE
Q psy950           23 KKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQ  102 (407)
Q Consensus        23 ~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  102 (407)
                      ..-..+......|.++++||..+.|||++.... +|.+.+.++. .+.+. .....|.+|++|+ .++||+++...+.|.
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~-~i~~~~~~~~-~~~~~-~~~~~~~~l~~~~-dg~l~v~~~~~~~i~   93 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQN-RTWAWSDDGQ-LSPEM-HPSHHQNGHCLNK-QGHLIACSHGLRRLE   93 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGT-EEEEEETTSC-EEEEE-SSCSSEEEEEECT-TCCEEEEETTTTEEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCC-EEEEEECCCC-eEEEE-CCCCCcceeeECC-CCcEEEEecCCCeEE
Confidence            344556667888999999999888999998764 9999999987 54443 3456799999999 467999998889999


Q ss_pred             EEec-CCCeEEEEc----cCCCCceEEEEeC-CEEEEEeCC-----------------CCeEEEEecCCCCCCcccEEcc
Q psy950          103 KISY-NGGNRQIIR----RNLPNPMGIAVHK-SDVYWVDRN-----------------LRTVYKASKLASTNITLPTPIR  159 (407)
Q Consensus       103 ~~~~-dG~~~~~~~----~~~~~P~~lav~~-~~lYwtd~~-----------------~~~I~~~~~~~~g~~~~~~~i~  159 (407)
                      +.+. +|.-.....    .....|.+++++. +.+|++|..                 .+.|++++..+     ....+.
T Consensus        94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g-----~~~~~~  168 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG-----TLSAPI  168 (296)
T ss_dssp             EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS-----CEEEEE
T ss_pred             EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCC-----CEEEee
Confidence            9999 565443322    2345788999987 789998752                 23566655432     112222


Q ss_pred             cCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec-
Q psy950          160 TGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST-  238 (407)
Q Consensus       160 ~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~-  238 (407)
                      ..+..|.++.+                                                  .+|++       .| ++. 
T Consensus       169 ~~~~~~~gi~~--------------------------------------------------s~dg~-------~l-v~~~  190 (296)
T 3e5z_A          169 RDRVKPNGLAF--------------------------------------------------LPSGN-------LL-VSDT  190 (296)
T ss_dssp             CCCSSEEEEEE--------------------------------------------------CTTSC-------EE-EEET
T ss_pred             cCCCCCccEEE--------------------------------------------------CCCCC-------EE-EEeC
Confidence            22222222222                                                  12221       11 211 


Q ss_pred             -ccceEEeecCCC-CC-eeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc-cCCCCccEEEEe-c
Q psy950          239 -RTEIRALHLDPT-LT-AVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS-SNLTNVVGVEFD-Y  313 (407)
Q Consensus       239 -~~~I~~i~l~~~-~~-~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~-~~~~~~~glAvD-w  313 (407)
                       ...|..+.+... .. ............+.++.+|..+ +||+++  . +.|.+++.+|..... .....|..++++ .
T Consensus       191 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~-~~v~~~~~~g~~~~~~~~~~~~~~~~f~~~  266 (296)
T 3e5z_A          191 GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG-LIWASA--G-DGVHVLTPDGDELGRVLTPQTTSNLCFGGP  266 (296)
T ss_dssp             TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS-CEEEEE--T-TEEEEECTTSCEEEEEECSSCCCEEEEEST
T ss_pred             CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC-CEEEEc--C-CeEEEECCCCCEEEEEECCCCceeEEEECC
Confidence             123444444311 11 0000000112335578888765 588888  5 679999888654332 222248899995 6


Q ss_pred             cCCeEEEEeCCCCCeEEEEECCCC
Q psy950          314 ADDKILFTQIRPWAKIAWIPTTNP  337 (407)
Q Consensus       314 i~~~LYwtd~~~~~~I~v~~~~~~  337 (407)
                      -.+.||.+...   .|.++++...
T Consensus       267 d~~~L~v~t~~---~l~~~~~~~~  287 (296)
T 3e5z_A          267 EGRTLYMTVST---EFWSIETNVR  287 (296)
T ss_dssp             TSCEEEEEETT---EEEEEECSCC
T ss_pred             CCCEEEEEcCC---eEEEEEcccc
Confidence            66788888753   5888776544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.19  E-value=1.7e-08  Score=95.26  Aligned_cols=246  Identities=11%  Similarity=0.122  Sum_probs=153.6

Q ss_pred             CcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeE
Q psy950           22 KKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI  101 (407)
Q Consensus        22 ~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I  101 (407)
                      +..-..+..+...+.|.+.+|..++|||+|.... +|.+.+.+|. .+++.. ....|+++++|+. ++||+++...+.|
T Consensus        34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~-~i~~~~~~g~-~~~~~~-~~~~~~gl~~d~d-G~l~v~~~~~~~v  109 (305)
T 3dr2_A           34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGR-RVLGWREDGT-VDVLLD-ATAFTNGNAVDAQ-QRLVHCEHGRRAI  109 (305)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTT-EEEEEETTSC-EEEEEE-SCSCEEEEEECTT-SCEEEEETTTTEE
T ss_pred             CCceEEEecCCcCccCCeEeCCCCEEEEEECCCC-EEEEEeCCCC-EEEEeC-CCCccceeeECCC-CCEEEEECCCCEE
Confidence            3344556677888999999999889999998764 9999998776 333333 4457999999995 5699999988999


Q ss_pred             EEEecCCCeEEEEc----cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCC
Q psy950          102 QKISYNGGNRQIIR----RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQ  176 (407)
Q Consensus       102 ~~~~~dG~~~~~~~----~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~q  176 (407)
                      .+.+.+|.......    .....|.+|+++. +.+|+||...+...  +..+  .                       ..
T Consensus       110 ~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~--~~~~--~-----------------------~~  162 (305)
T 3dr2_A          110 TRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRK--PSQG--C-----------------------PA  162 (305)
T ss_dssp             EEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSC--GGGS--C-----------------------CC
T ss_pred             EEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccc--cccc--c-----------------------cc
Confidence            99999976443322    2346788999986 78999876422100  0000  0                       00


Q ss_pred             CCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeee
Q psy950          177 PPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPF  256 (407)
Q Consensus       177 p~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~  256 (407)
                      .       ..  .+. ..+.                      .++++..               .+..+           
T Consensus       163 ~-------~~--~~~-~~v~----------------------~~d~~~g---------------~~~~~-----------  184 (305)
T 3dr2_A          163 D-------PE--LAH-HSVY----------------------RLPPDGS---------------PLQRM-----------  184 (305)
T ss_dssp             C-------CS--SSC-EEEE----------------------EECSSSC---------------CCEEE-----------
T ss_pred             c-------cc--cCC-CeEE----------------------EEcCCCC---------------cEEEE-----------
Confidence            0       00  000 0000                      0011000               00000           


Q ss_pred             EeecCCcceEEEEEEcCCCEEEEEEecC----CceEEEEeCCCCccc---c----cCCCCccEEEEeccCCeEEEEeCCC
Q psy950          257 KTVSNLTNVVGVEFDYADDKILFTQIRP----WAKIAWIPTTNPSSA---S----SNLTNVVGVEFDYADDKILFTQIRP  325 (407)
Q Consensus       257 ~~~~~~~~~~ald~d~~~~~lywsd~~~----~~~I~~~~~~~~~~~---~----~~~~~~~glAvDwi~~~LYwtd~~~  325 (407)
                        . ....+.++++++.++.||+++...    ...|.++++++....   .    ..+ .|.||++|.-++ ||.+. . 
T Consensus       185 --~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~-~pdgi~~d~~G~-lwv~~-~-  257 (305)
T 3dr2_A          185 --A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG-LPDGFCVDRGGW-LWSSS-G-  257 (305)
T ss_dssp             --E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS-CCCSEEECTTSC-EEECC-S-
T ss_pred             --e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC-CCCeEEECCCCC-EEEec-C-
Confidence              0 112345778888888899988751    146777776543211   1    234 789999998765 66665 3 


Q ss_pred             CCeEEEEECCCCcc-cccCCCceeEEEEcCCCCeEEEEeC
Q psy950          326 WAKIAWIPTTNPSS-ASSNLTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       326 ~~~I~v~~~~~~~r-l~~~l~~P~~iavdp~~g~lywtd~  364 (407)
                       +.|.+++.+|... ....-..|.+++..|..+.||.+..
T Consensus       258 -~gv~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          258 -TGVCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             -SEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred             -CcEEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence             4699999877642 1221236999999987778888753

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.14  E-value=5.8e-09  Score=101.41  Aligned_cols=274  Identities=8%  Similarity=0.010  Sum_probs=159.0

Q ss_pred             ceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEE------eCCCCCceeEEEeCC---CCeEEEE
Q psy950           24 KKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIV------SNGISMPRDLTIDMQ---THDVYWV   94 (407)
Q Consensus        24 ~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~------~~~~~~P~glaiD~~---~~~lYw~   94 (407)
                      +..++..++.+|++|+++|...+||+++..  .+|.+.+.||...+.+.      ..+...|.||++++.   +++||++
T Consensus         9 ~~~~va~~l~~P~~i~~~pdG~~l~V~e~~--G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~   86 (353)
T 2g8s_A            9 NVEVLQDKLDHPWALAFLPDNHGMLITLRG--GELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS   86 (353)
T ss_dssp             EEEEEEEEESSEEEEEECSTTCCEEEEETT--TEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred             EEEEEECCCCCcEEEEEcCCCCEEEEEeCC--ceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence            334555679999999999974449999975  58999988875332221      123446899999997   8999999


Q ss_pred             eCC-------CCeEEEEecCCC-----eEEEEcc-------CCCCceEEEEeC-CEEEEEeCC-------------CCeE
Q psy950           95 DAK-------LDLIQKISYNGG-----NRQIIRR-------NLPNPMGIAVHK-SDVYWVDRN-------------LRTV  141 (407)
Q Consensus        95 d~~-------~~~I~~~~~dG~-----~~~~~~~-------~~~~P~~lav~~-~~lYwtd~~-------------~~~I  141 (407)
                      +..       ..+|.+..+++.     ..+++..       ....|.+|++.. ++||++...             .++|
T Consensus        87 ~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I  166 (353)
T 2g8s_A           87 YSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKL  166 (353)
T ss_dssp             EEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEE
T ss_pred             EeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEE
Confidence            865       457999888753     3344432       123478999976 799999754             3489


Q ss_pred             EEEecCCCC---C------CcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcc--cccccceecCCCCCCCCcce
Q psy950          142 YKASKLAST---N------ITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNG--GCEQLCFSYPVEFPQNKLHY  210 (407)
Q Consensus       142 ~~~~~~~~g---~------~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng--~Cs~lC~~~~~~~~~~~~~~  210 (407)
                      .|++.+++-   +      ....+++..++..|.++++....     +.-.+..  ++  +-+.+-...++.      .|
T Consensus       167 ~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~-----g~l~~~d--~g~~~~dei~~i~~G~------ny  233 (353)
T 2g8s_A          167 VRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWS-----NALWLNE--HGPRGGDEINIPQKGK------NY  233 (353)
T ss_dssp             EEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTT-----TEEEEEE--ECSBSCEEEECCCTTC------BC
T ss_pred             EEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCC-----CCEEEEe--cCCCCCcEEeEeccCC------cC
Confidence            999987510   0      01345666777788888865311     1111111  11  111222222221      11


Q ss_pred             ---EEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEc------CCCEEEEEE
Q psy950          211 ---KCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDY------ADDKILFTQ  281 (407)
Q Consensus       211 ---~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~------~~~~lywsd  281 (407)
                         .|.  .|..  .++..|....       ..       .......|+........+.++.|..      ..+.+|+++
T Consensus       234 Gwp~~~--~~~~--~~~~~~~~~~-------~~-------~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~  295 (353)
T 2g8s_A          234 GWPLAT--WGIN--YSGFKIPEAK-------GE-------IVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGA  295 (353)
T ss_dssp             CTTTBC--SSBC--TTSSCCTTCC-------BS-------SCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEE
T ss_pred             CCCCcc--CCCC--CCCCccCccc-------CC-------CCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEE
Confidence               010  0000  0011110000       00       0000111211111223466777753      247899999


Q ss_pred             ecCCceEEEEeCCCCcccc------cCCCCccEEEEeccCCeEEEE-eCCCCCeEEEEE
Q psy950          282 IRPWAKIAWIPTTNPSSAS------SNLTNVVGVEFDYADDKILFT-QIRPWAKIAWIP  333 (407)
Q Consensus       282 ~~~~~~I~~~~~~~~~~~~------~~~~~~~glAvDwi~~~LYwt-d~~~~~~I~v~~  333 (407)
                      ... .+|.++.+++.....      +....|.+|++++-+ .||.+ |... ++|.++.
T Consensus       296 ~~~-~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG-~lyv~td~~~-g~I~ri~  351 (353)
T 2g8s_A          296 LKD-KDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG-YLYVLTDESS-GELLKVS  351 (353)
T ss_dssp             TTT-TEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS-CEEEEECSTT-EEEEEEE
T ss_pred             ccC-CEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC-cEEEEEeCCC-CEEEEEe
Confidence            988 899999887643221      322389999999875 59996 6566 7898875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.14  E-value=7.6e-08  Score=90.87  Aligned_cols=262  Identities=11%  Similarity=0.064  Sum_probs=165.2

Q ss_pred             EEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE-EEEccC
Q psy950           39 PFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR-QIIRRN  117 (407)
Q Consensus        39 avdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~  117 (407)
                      .+++..+++|+++.... .|...+++.......+..+...| ++++++.++.||+++...+.|..++++.... ......
T Consensus         4 ~~~~~~~~~~v~~~~~~-~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLR-RISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ---CCCCEEEEEEGGGT-EEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eEcCCCCEEEEEecCCC-eEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            45677899999998764 99999988666655555556567 9999999999999999899999999976554 333344


Q ss_pred             CCCceE-EEEeC--CEEEEEeCCCC--eEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccc
Q psy950          118 LPNPMG-IAVHK--SDVYWVDRNLR--TVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGC  192 (407)
Q Consensus       118 ~~~P~~-lav~~--~~lYwtd~~~~--~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~C  192 (407)
                      ...|.. +++..  .+||......+  .|...+... +  .....+.. -..|.++.                       
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~-~--~~~~~~~~-~~~~~~~~-----------------------  134 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK-N--KFISTIPI-PYDAVGIA-----------------------  134 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT-T--EEEEEEEC-CTTEEEEE-----------------------
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCC-C--CeEEEEEC-CCCccceE-----------------------
Confidence            567777 88875  57884333333  677777654 1  11111100 00111111                       


Q ss_pred             cccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecc--cc-eEEeecCCCCCe--eeeEeecCCcceEE
Q psy950          193 EQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTR--TE-IRALHLDPTLTA--VPFKTVSNLTNVVG  267 (407)
Q Consensus       193 s~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~--~~-I~~i~l~~~~~~--~~~~~~~~~~~~~a  267 (407)
                                                 +.+|++       +|+++..  .. +....++.....  .....+.....+.+
T Consensus       135 ---------------------------~spdg~-------~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~  180 (331)
T 3u4y_A          135 ---------------------------ISPNGN-------GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFN  180 (331)
T ss_dssp             ---------------------------ECTTSS-------CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEE
T ss_pred             ---------------------------ECCCCC-------EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccc
Confidence                                       112221       1222211  22 333333321110  00112233455788


Q ss_pred             EEEEcCCCEEEEEEecCCceEEEEeCCCCcc---cc--cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc--c
Q psy950          268 VEFDYADDKILFTQIRPWAKIAWIPTTNPSS---AS--SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS--A  340 (407)
Q Consensus       268 ld~d~~~~~lywsd~~~~~~I~~~~~~~~~~---~~--~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r--l  340 (407)
                      +.+++.++++|+++... +.|..+++.+...   ..  ..+..|.+|++++.++.||.++... +.|.++++.+...  +
T Consensus       181 ~~~spdg~~l~v~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-~~i~~~d~~~~~~~~~  258 (331)
T 3u4y_A          181 ITFTPDGNFAFVANLIG-NSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTEST-VDVFNFNQLSGTLSFV  258 (331)
T ss_dssp             EEECTTSSEEEEEETTT-TEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSE-EEEEEEETTTTEEEEE
T ss_pred             eEECCCCCEEEEEeCCC-CeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCC-CEEEEEECCCCceeee
Confidence            99999999999999887 8899999876554   22  3334899999999999999999887 7899999876532  1


Q ss_pred             ---ccC-------CCceeEEEEcCCCCeEEEEeCC
Q psy950          341 ---SSN-------LTNVVGVEFDYADDKILFTQIR  365 (407)
Q Consensus       341 ---~~~-------l~~P~~iavdp~~g~lywtd~~  365 (407)
                         ...       .....++++.|...+||.+...
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  293 (331)
T 3u4y_A          259 KSFGHGLLIDPRPLFGANQMALNKTETKLFISANI  293 (331)
T ss_dssp             EEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred             cccccccccCCCCcccccceEECCCCCEEEEecCC
Confidence               111       1112458999999999988753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.13  E-value=2.2e-07  Score=87.69  Aligned_cols=253  Identities=7%  Similarity=-0.066  Sum_probs=157.7

Q ss_pred             eEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCe-EEEEeCCCCCcee-EEEeCCCCeEEEEeCCCC--e
Q psy950           25 KKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKW-TSIVSNGISMPRD-LTIDMQTHDVYWVDAKLD--L  100 (407)
Q Consensus        25 ~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~-~~l~~~~~~~P~g-laiD~~~~~lYw~d~~~~--~  100 (407)
                      ...+..+...| +++++|..++||.++.+.. +|.+.+++.... ...+.. ...|.. +++++.++.||..+...+  .
T Consensus        33 ~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~-~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~  109 (331)
T 3u4y_A           33 LNQITLGYDFV-DTAITSDCSNVVVTSDFCQ-TLVQIETQLEPPKVVAIQE-GQSSMADVDITPDDQFAVTVTGLNHPFN  109 (331)
T ss_dssp             EEEEECCCCEE-EEEECSSSCEEEEEESTTC-EEEEEECSSSSCEEEEEEE-CSSCCCCEEECTTSSEEEECCCSSSSCE
T ss_pred             eeeEEccCCcc-eEEEcCCCCEEEEEeCCCC-eEEEEECCCCceeEEeccc-CCCCccceEECCCCCEEEEecCCCCccc
Confidence            33444456667 9999999999999998764 999999976654 333332 346878 999999999994444334  8


Q ss_pred             EEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCCCe-EEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCC
Q psy950          101 IQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRT-VYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQP  177 (407)
Q Consensus       101 I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~-I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp  177 (407)
                      |...+++.............|.++++.+  .+||.++...+. |...+....+.     +..     .. ....     +
T Consensus       110 i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~-----~~~-----~~-~~~~-----~  173 (331)
T 3u4y_A          110 MQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGV-----LFD-----TG-QEFI-----S  173 (331)
T ss_dssp             EEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCC-----EEE-----EE-EEEE-----C
T ss_pred             EEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCc-----Eee-----cC-Cccc-----c
Confidence            9999998666543344566889999977  379999887666 66555543111     000     00 0000     0


Q ss_pred             CCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCCeee
Q psy950          178 PDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLTAVP  255 (407)
Q Consensus       178 ~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~~~~  255 (407)
                      . +.         +-.+++                       +.+|++       +|+++.  ...|..+.+.......+
T Consensus       174 ~-~~---------~~~~~~-----------------------~spdg~-------~l~v~~~~~~~v~v~d~~~~~~~~~  213 (331)
T 3u4y_A          174 G-GT---------RPFNIT-----------------------FTPDGN-------FAFVANLIGNSIGILETQNPENITL  213 (331)
T ss_dssp             S-SS---------SEEEEE-----------------------ECTTSS-------EEEEEETTTTEEEEEECSSTTSCEE
T ss_pred             C-CC---------CccceE-----------------------ECCCCC-------EEEEEeCCCCeEEEEECCCCcccce
Confidence            0 00         000111                       123332       122222  23455455443322111


Q ss_pred             eEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCccc------cc--CC----CCccEEEEeccCCeEEEEeC
Q psy950          256 FKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA------SS--NL----TNVVGVEFDYADDKILFTQI  323 (407)
Q Consensus       256 ~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~------~~--~~----~~~~glAvDwi~~~LYwtd~  323 (407)
                      +..+.....+.++.+++.+++||++.... +.|..+++.+....      ..  +.    ..+.++++.+.++.||.++.
T Consensus       214 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~  292 (331)
T 3u4y_A          214 LNAVGTNNLPGTIVVSRDGSTVYVLTEST-VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN  292 (331)
T ss_dssp             EEEEECSSCCCCEEECTTSSEEEEECSSE-EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEET
T ss_pred             eeeccCCCCCceEEECCCCCEEEEEEcCC-CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecC
Confidence            22233345567889999999999998776 77888888765441      01  11    02345899999999999999


Q ss_pred             CCCCeEEEEECCCCc
Q psy950          324 RPWAKIAWIPTTNPS  338 (407)
Q Consensus       324 ~~~~~I~v~~~~~~~  338 (407)
                      .. +.|.+.++.+..
T Consensus       293 ~~-~~v~v~d~~~~~  306 (331)
T 3u4y_A          293 IS-RELKVFTISGKV  306 (331)
T ss_dssp             TT-TEEEEEETTSCE
T ss_pred             CC-CcEEEEEecCCc
Confidence            88 899999988764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.08  E-value=1e-07  Score=89.28  Aligned_cols=245  Identities=12%  Similarity=0.132  Sum_probs=146.7

Q ss_pred             EEcCCCCCcceEEEeCCCCEEEEE-------EcCCCCeEEEEeCCCCCeEEEEeC----CCCCceeEEEeCCCCeEEEEe
Q psy950           27 LKTSFRSANTTSPFSPLPRLLYWI-------DYGQYPRIGKSYLDGSKWTSIVSN----GISMPRDLTIDMQTHDVYWVD   95 (407)
Q Consensus        27 l~~~~~~~P~~iavdp~~g~lywt-------d~~~~~~I~r~~~dG~~~~~l~~~----~~~~P~glaiD~~~~~lYw~d   95 (407)
                      .+..++..|.++++|+ .|.|||+       +... ..|.+.+.+....+.+...    ....|.+|++|+.+++||+++
T Consensus        12 ~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~   89 (314)
T 1pjx_A           12 KVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPA-GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD   89 (314)
T ss_dssp             EEECCCTTCEEEEECT-TSCEEEEETTCEETTEEC-CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE
T ss_pred             hhhccCCCccCceECC-CCCEEEEEeccccCCCCC-CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE
Confidence            4567888999999995 5789999       5544 3899998754444443320    124799999999768999999


Q ss_pred             CCCCeEEEEecCCCeEEEE-c-----cCCCCceEEEEeC-CEEEEEeCCC---------------CeEEEEecCCCCCCc
Q psy950           96 AKLDLIQKISYNGGNRQII-R-----RNLPNPMGIAVHK-SDVYWVDRNL---------------RTVYKASKLASTNIT  153 (407)
Q Consensus        96 ~~~~~I~~~~~dG~~~~~~-~-----~~~~~P~~lav~~-~~lYwtd~~~---------------~~I~~~~~~~~g~~~  153 (407)
                      ... .|.+++.+|. .+.+ .     .....|.+|+++. +.+|+++...               +.|++.+..+  .  
T Consensus        90 ~~~-~l~~~d~~g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g--~--  163 (314)
T 1pjx_A           90 MRL-GLLVVQTDGT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG--Q--  163 (314)
T ss_dssp             TTT-EEEEEETTSC-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS--C--
T ss_pred             CCC-CEEEEeCCCC-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCC--C--
Confidence            744 8999999854 3333 2     1235689999986 7899998754               3555555332  1  


Q ss_pred             ccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccccccee
Q psy950          154 LPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY  233 (407)
Q Consensus       154 ~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~  233 (407)
                       ...+......|.++.+...                                              ..+|+       ..
T Consensus       164 -~~~~~~~~~~~~~i~~~~~----------------------------------------------~d~dg-------~~  189 (314)
T 1pjx_A          164 -MIQVDTAFQFPNGIAVRHM----------------------------------------------NDGRP-------YQ  189 (314)
T ss_dssp             -EEEEEEEESSEEEEEEEEC----------------------------------------------TTSCE-------EE
T ss_pred             -EEEeccCCCCcceEEEecc----------------------------------------------cCCCC-------CE
Confidence             1111111112222221100                                              00111       01


Q ss_pred             eeeec--ccceEEeecCCCC-Ce--eeeEeecCC--cceEEEEEEcCCCEEEEEEecCCceEEEEeCC-CCcccc-cC-C
Q psy950          234 LVFST--RTEIRALHLDPTL-TA--VPFKTVSNL--TNVVGVEFDYADDKILFTQIRPWAKIAWIPTT-NPSSAS-SN-L  303 (407)
Q Consensus       234 Ll~s~--~~~I~~i~l~~~~-~~--~~~~~~~~~--~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~-~~~~~~-~~-~  303 (407)
                      |+++.  ...|..+.+.... ..  ..+..+...  ..+.++.+|.. +.||+++... +.|.+++.+ +..... .. .
T Consensus       190 l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~-G~l~v~~~~~-~~i~~~d~~~g~~~~~~~~~~  267 (314)
T 1pjx_A          190 LIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED-NNLLVANWGS-SHIEVFGPDGGQPKMRIRCPF  267 (314)
T ss_dssp             EEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT-CCEEEEEETT-TEEEEECTTCBSCSEEEECSS
T ss_pred             EEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCC-CCEEEEEcCC-CEEEEEcCCCCcEeEEEeCCC
Confidence            22221  1234444332110 00  011111111  45778888864 5789998877 789999887 332221 22 1


Q ss_pred             CCccEEEEeccCCeEEEEeCCCCCeEEEEECCC
Q psy950          304 TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTN  336 (407)
Q Consensus       304 ~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~  336 (407)
                      ..|.+++++.-++.||.++... +.|.+++++.
T Consensus       268 ~~~~~i~~~~dg~~l~v~~~~~-~~l~~~~~~~  299 (314)
T 1pjx_A          268 EKPSNLHFKPQTKTIFVTEHEN-NAVWKFEWQR  299 (314)
T ss_dssp             SCEEEEEECTTSSEEEEEETTT-TEEEEEECSS
T ss_pred             CCceeEEECCCCCEEEEEeCCC-CeEEEEeCCC
Confidence            3899999998888899999887 7899998764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.07  E-value=2.3e-07  Score=88.50  Aligned_cols=248  Identities=12%  Similarity=0.113  Sum_probs=147.5

Q ss_pred             cCCCCCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEe--CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEe
Q psy950           29 TSFRSANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVS--NGISMPRDLTIDMQTHDVYWVDAKLDLIQKIS  105 (407)
Q Consensus        29 ~~~~~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~--~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~  105 (407)
                      ......|.+++++|. |+||.++.. ....|...++++...+.+..  .....|.+|++++.++.||.++...+.|...+
T Consensus        36 ~~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEccC-CeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            334678999999997 459999863 33488888887655433332  23458999999999999999998888888888


Q ss_pred             cC--CCeEEE--Ecc---------CCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEe
Q psy950          106 YN--GGNRQI--IRR---------NLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIF  171 (407)
Q Consensus       106 ~d--G~~~~~--~~~---------~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~  171 (407)
                      ++  |....+  +..         ...+|.++++.. +.+|.++...+.|...+....+.   ...+.          .+
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~---~~~~~----------~~  181 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ---LSEQS----------VL  181 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC---EEEEE----------EE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc---EEEee----------eE
Confidence            75  332222  111         123577899876 55999998888777766552121   11110          00


Q ss_pred             eecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCC
Q psy950          172 DIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDP  249 (407)
Q Consensus       172 ~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~  249 (407)
                         ..+. +.         +-.++++                       .+|++       +|+++.  ...+..+.++.
T Consensus       182 ---~~~~-g~---------~p~~~~~-----------------------spdg~-------~l~v~~~~~~~v~v~~~~~  218 (347)
T 3hfq_A          182 ---TMEA-GF---------GPRHLVF-----------------------SPDGQ-------YAFLAGELSSQIASLKYDT  218 (347)
T ss_dssp             ---ECCT-TC---------CEEEEEE-----------------------CTTSS-------EEEEEETTTTEEEEEEEET
T ss_pred             ---EcCC-CC---------CCceEEE-----------------------CCCCC-------EEEEEeCCCCEEEEEEecC
Confidence               0000 00         0011111                       22221       111111  11222222221


Q ss_pred             CCCe-eeeEeec-------CCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCc--cc-c---cCCCCccEEEEeccC
Q psy950          250 TLTA-VPFKTVS-------NLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS--SA-S---SNLTNVVGVEFDYAD  315 (407)
Q Consensus       250 ~~~~-~~~~~~~-------~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~--~~-~---~~~~~~~glAvDwi~  315 (407)
                      ..-. .....+.       ....+.++.+++.+++||+++... +.|...+++...  .. .   .-+..|.+|++++.+
T Consensus       219 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~-~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg  297 (347)
T 3hfq_A          219 QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY-NTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE  297 (347)
T ss_dssp             TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT-TEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS
T ss_pred             CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC-CEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC
Confidence            1000 0000110       113477899999999999999877 778887775221  11 1   213379999999999


Q ss_pred             CeEEEEeCCCCCeEEEEECC
Q psy950          316 DKILFTQIRPWAKIAWIPTT  335 (407)
Q Consensus       316 ~~LYwtd~~~~~~I~v~~~~  335 (407)
                      +.||.++... ++|.+..++
T Consensus       298 ~~l~v~~~~~-~~v~v~~~d  316 (347)
T 3hfq_A          298 AFVVVVNQNT-DNATLYARD  316 (347)
T ss_dssp             SEEEEEETTT-TEEEEEEEC
T ss_pred             CEEEEEEcCC-CcEEEEEEe
Confidence            9999999987 788888554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.06  E-value=6e-07  Score=85.12  Aligned_cols=229  Identities=9%  Similarity=0.067  Sum_probs=144.1

Q ss_pred             CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCC-C--------CceeEEEeCCCCeEEEEeC-CCCeEE
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGI-S--------MPRDLTIDMQTHDVYWVDA-KLDLIQ  102 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~-~--------~P~glaiD~~~~~lYw~d~-~~~~I~  102 (407)
                      ..|.+++++|..+++|+++.... .|...+.+.......+...- .        .|.++++++.+++||+++. ..+.|.
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~-~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~  167 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNS-AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW  167 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTT-EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCC-EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence            45999999999999999998764 89999987555433343221 1        2889999999999999994 567899


Q ss_pred             EEecCCCeEEEEcc-CCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCC
Q psy950          103 KISYNGGNRQIIRR-NLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPD  179 (407)
Q Consensus       103 ~~~~dG~~~~~~~~-~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~  179 (407)
                      .++........... ....|.++++..  ++||.++. .+.|...+..+ +  .....+..             ..    
T Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~-~--~~~~~~~~-------------~~----  226 (353)
T 3vgz_A          168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-DGELITIDTAD-N--KILSRKKL-------------LD----  226 (353)
T ss_dssp             EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-TSEEEEEETTT-T--EEEEEEEC-------------CC----
T ss_pred             EEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-CCeEEEEECCC-C--eEEEEEEc-------------CC----
Confidence            99997665533333 456689999865  67888876 56777777654 2  11111110             00    


Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCCeeeeE
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLTAVPFK  257 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~~~~~~  257 (407)
                       ..+     .+....+++                       .+|++       +++++.  ...|..+.+...... ...
T Consensus       227 -~~~-----~~~~~~~~~-----------------------s~dg~-------~l~~~~~~~~~v~~~d~~~~~~~-~~~  269 (353)
T 3vgz_A          227 -DGK-----EHFFINISL-----------------------DTARQ-------RAFITDSKAAEVLVVDTRNGNIL-AKV  269 (353)
T ss_dssp             -SSS-----CCCEEEEEE-----------------------ETTTT-------EEEEEESSSSEEEEEETTTCCEE-EEE
T ss_pred             -CCC-----CcccceEEE-----------------------CCCCC-------EEEEEeCCCCEEEEEECCCCcEE-EEE
Confidence             000     000001111                       22221       122221  123444444332211 111


Q ss_pred             eecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeCC
Q psy950          258 TVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIR  324 (407)
Q Consensus       258 ~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~~  324 (407)
                      ++   ..+.++.|++.++++|+++... +.|..++..+.....  ..+..|.++++++.++.||.+...
T Consensus       270 ~~---~~~~~~~~s~dg~~l~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          270 AA---PESLAVLFNPARNEAYVTHRQA-GKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EC---SSCCCEEEETTTTEEEEEETTT-TEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             Ec---CCCceEEECCCCCEEEEEECCC-CeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            11   2235688999999999999887 889999987665443  344489999999999999999876

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.05  E-value=2.2e-07  Score=88.06  Aligned_cols=226  Identities=12%  Similarity=0.070  Sum_probs=145.3

Q ss_pred             EcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCC----CeEEE
Q psy950           28 KTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKL----DLIQK  103 (407)
Q Consensus        28 ~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~----~~I~~  103 (407)
                      +......|.++++|+. |.|||++.... .|.+.+.++...+.+.......|.+|++|+. ++||+++...    +.|.+
T Consensus        40 ~~~~~~~~~~~~~~~~-g~l~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~d-g~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQ-GQLFLLDVFEG-NIFKINPETKEIKRPFVSHKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EESSCCCEEEEEECTT-SCEEEEETTTC-EEEEECTTTCCEEEEEECSSSSEEEEEECTT-SCEEEEECTTSSSCCEEEE
T ss_pred             EeccCccccCcEECCC-CCEEEEECCCC-EEEEEeCCCCcEEEEeeCCCCCcceEEECCC-CcEEEEeCCCCCCCceEEE
Confidence            3445667999999976 67999987654 8999999877666555333457999999985 5789988766    68999


Q ss_pred             EecCCCeEE-EEc--cCCCCceEEEEeC-CEEEEEeCCC------CeEEEEecCCCCCCcccEEcccCCCCceeeEEeee
Q psy950          104 ISYNGGNRQ-IIR--RNLPNPMGIAVHK-SDVYWVDRNL------RTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDI  173 (407)
Q Consensus       104 ~~~dG~~~~-~~~--~~~~~P~~lav~~-~~lYwtd~~~------~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~  173 (407)
                      ++.++...+ .+.  .....|.+++++. +.+|+++...      +.|++++..+                         
T Consensus       117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~-------------------------  171 (333)
T 2dg1_A          117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-------------------------  171 (333)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-------------------------
T ss_pred             EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC-------------------------
Confidence            999887665 332  2345688888876 6777776531      1222222111                         


Q ss_pred             cCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCe
Q psy950          174 VNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTA  253 (407)
Q Consensus       174 ~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~  253 (407)
                                                                         ..               +..+.       
T Consensus       172 ---------------------------------------------------~~---------------~~~~~-------  178 (333)
T 2dg1_A          172 ---------------------------------------------------RT---------------VTPII-------  178 (333)
T ss_dssp             ---------------------------------------------------CC---------------EEEEE-------
T ss_pred             ---------------------------------------------------CE---------------EEEee-------
Confidence                                                               00               00000       


Q ss_pred             eeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCC--CCccc-------c---cCCCCccEEEEeccCCeEEEE
Q psy950          254 VPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTT--NPSSA-------S---SNLTNVVGVEFDYADDKILFT  321 (407)
Q Consensus       254 ~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~--~~~~~-------~---~~~~~~~glAvDwi~~~LYwt  321 (407)
                            .....+.++.+++.++.||+++... +.|++++.+  +....       .   +.. .|.+|++|.- ++||.+
T Consensus       179 ------~~~~~~~~i~~~~dg~~l~v~~~~~-~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~-~~~~i~~d~~-G~l~v~  249 (333)
T 2dg1_A          179 ------QNISVANGIALSTDEKVLWVTETTA-NRLHRIALEDDGVTIQPFGATIPYYFTGHE-GPDSCCIDSD-DNLYVA  249 (333)
T ss_dssp             ------EEESSEEEEEECTTSSEEEEEEGGG-TEEEEEEECTTSSSEEEEEEEEEEECCSSS-EEEEEEEBTT-CCEEEE
T ss_pred             ------cCCCcccceEECCCCCEEEEEeCCC-CeEEEEEecCCCcCcccccceEEEecCCCC-CCCceEECCC-CCEEEE
Confidence                  0011234566666666777777655 567666663  22110       0   112 7889999986 568888


Q ss_pred             eCCCCCeEEEEECCCCcc--cccC------CCceeEEEEcCCCCeEEEEeC
Q psy950          322 QIRPWAKIAWIPTTNPSS--ASSN------LTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       322 d~~~~~~I~v~~~~~~~r--l~~~------l~~P~~iavdp~~g~lywtd~  364 (407)
                      +... +.|.+++.++...  +...      +..|.+++++|..+.||.+.-
T Consensus       250 ~~~~-~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          250 MYGQ-GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             EETT-TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EcCC-CEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence            8777 7899998866532  2211      127999999987778988864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.04  E-value=8.8e-07  Score=83.33  Aligned_cols=272  Identities=8%  Similarity=0.026  Sum_probs=160.4

Q ss_pred             CCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC--CCCeEEEEe-CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEec
Q psy950           30 SFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD--GSKWTSIVS-NGISMPRDLTIDMQTHDVYWVDAKLDLIQKISY  106 (407)
Q Consensus        30 ~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d--G~~~~~l~~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~  106 (407)
                      .....|.+++++|...+||+++... ..|...+++  +...+.+.. .....|.++++++.++.||++....+.|...++
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPE-FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTT-TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCC-CeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            3456799999999999999998864 378887776  434333221 122389999999999999999988888888888


Q ss_pred             -CCCeEEEE--ccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCC
Q psy950          107 -NGGNRQII--RRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDEN  181 (407)
Q Consensus       107 -dG~~~~~~--~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~  181 (407)
                       +|...+.+  ......|.++++..  .+||.++...+.|...+....+.   ...+..       . ..   ..+. + 
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~-------~-~~---~~~~-~-  177 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH---LVAQDP-------A-EV---TTVE-G-  177 (343)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC---EEEEEE-------E-EE---ECST-T-
T ss_pred             CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc---eeeecc-------c-cc---ccCC-C-
Confidence             34333222  24556789999876  57999886667777666543011   110000       0 00   0000 0 


Q ss_pred             CCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCC--CCe--ee
Q psy950          182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPT--LTA--VP  255 (407)
Q Consensus       182 n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~--~~~--~~  255 (407)
                              ....++++                       .+|++       +|+++.  ...|..+.++..  ...  ..
T Consensus       178 --------~~~~~~~~-----------------------~pdg~-------~l~~~~~~~~~i~~~~~~~~~g~~~~~~~  219 (343)
T 1ri6_A          178 --------AGPRHMVF-----------------------HPNEQ-------YAYCVNELNSSVDVWELKDPHGNIECVQT  219 (343)
T ss_dssp             --------CCEEEEEE-----------------------CTTSS-------EEEEEETTTTEEEEEESSCTTSCCEEEEE
T ss_pred             --------CCcceEEE-----------------------CCCCC-------EEEEEeCCCCEEEEEEecCCCCcEEEEee
Confidence                    00011111                       11211       111111  122333333221  110  00


Q ss_pred             eEee----cCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCC--CCccc--c--cCCCCccEEEEeccCCeEEEEeCCC
Q psy950          256 FKTV----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTT--NPSSA--S--SNLTNVVGVEFDYADDKILFTQIRP  325 (407)
Q Consensus       256 ~~~~----~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~--~~~~~--~--~~~~~~~glAvDwi~~~LYwtd~~~  325 (407)
                      +..+    .....+.++.+++.++.||++.... +.|...+++  +....  .  .....|.++++++-++.||.++...
T Consensus       220 ~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  298 (343)
T 1ri6_A          220 LDMMPENFSDTRWAADIHITPDGRHLYACDRTA-SLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS  298 (343)
T ss_dssp             EECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-TEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT
T ss_pred             ccccCccccccCCccceEECCCCCEEEEEecCC-CEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCC
Confidence            0001    1123566899999999999998777 778887776  32211  1  2223699999999999999999877


Q ss_pred             CCeEEEEECC--CCc--ccc--cCCCceeEEEEcCCCCe
Q psy950          326 WAKIAWIPTT--NPS--SAS--SNLTNVVGVEFDYADDK  358 (407)
Q Consensus       326 ~~~I~v~~~~--~~~--rl~--~~l~~P~~iavdp~~g~  358 (407)
                       +.|.+.+++  +..  ++.  .....|.+|+++|....
T Consensus       299 -~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~~  336 (343)
T 1ri6_A          299 -HHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEGG  336 (343)
T ss_dssp             -CEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC--
T ss_pred             -CeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccCC
Confidence             788887554  332  222  23378999999987543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.03  E-value=2.6e-07  Score=86.27  Aligned_cols=249  Identities=10%  Similarity=0.076  Sum_probs=145.8

Q ss_pred             CCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEccCCCCceEEEEeC-CEEEEEeCCCCeEE
Q psy950           64 DGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHK-SDVYWVDRNLRTVY  142 (407)
Q Consensus        64 dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~-~~lYwtd~~~~~I~  142 (407)
                      .+...+.+. .....|+|++.|+.++.|||++...+.|.+.+.++. .+.+......|.+|++.. +.||+++...+.|.
T Consensus        16 ~~~~~~~l~-~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~   93 (296)
T 3e5z_A           16 AGAEARRLA-DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE   93 (296)
T ss_dssp             TTCCCEEEE-CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred             CCCcEEEEe-cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence            344444444 467799999999988889999999999999999988 655555667899999986 78999998888899


Q ss_pred             EEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccC
Q psy950          143 KASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSAS  222 (407)
Q Consensus       143 ~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~  222 (407)
                      +.+..+ +.   .+.+.....           ..+  ...|         ..+++...+      .-+.+.-..|..-..
T Consensus        94 ~~d~~~-g~---~~~~~~~~~-----------~~~--~~~~---------~~i~~d~~G------~l~vtd~~~g~~~~~  141 (296)
T 3e5z_A           94 RQREPG-GE---WESIADSFE-----------GKK--LNSP---------NDVCLAPDG------SLWFSDPTYGIDKPE  141 (296)
T ss_dssp             EECSTT-CC---EEEEECEET-----------TEE--CCCC---------CCEEECTTS------CEEEEECSHHHHCGG
T ss_pred             EEcCCC-Cc---EEEEeeccC-----------CCC--CCCC---------CCEEECCCC------CEEEECCcccccccc
Confidence            988754 22   222210000           000  0000         011110000      001100000000000


Q ss_pred             CCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCccc---
Q psy950          223 DPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA---  299 (407)
Q Consensus       223 d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~---  299 (407)
                      .+..... +     .....|..+... ..   ..........+.++++++.++.+ |++... ++|.+.+++.....   
T Consensus       142 ~~~~~~~-~-----~~~~~l~~~~~~-g~---~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~-~~i~~~~~~~~g~~~~~  209 (296)
T 3e5z_A          142 EGYGGEM-E-----LPGRWVFRLAPD-GT---LSAPIRDRVKPNGLAFLPSGNLL-VSDTGD-NATHRYCLNARGETEYQ  209 (296)
T ss_dssp             GSSCCCC-C-----SSSCEEEEECTT-SC---EEEEECCCSSEEEEEECTTSCEE-EEETTT-TEEEEEEECSSSCEEEE
T ss_pred             ccccccc-c-----CCCcEEEEECCC-CC---EEEeecCCCCCccEEECCCCCEE-EEeCCC-CeEEEEEECCCCcCcCC
Confidence            0000000 0     001234444332 11   11123345567889999988888 999887 78988887521111   


Q ss_pred             ----c-cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc--cccCCCceeEEEEc-CCCCeEEEEeC
Q psy950          300 ----S-SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS--ASSNLTNVVGVEFD-YADDKILFTQI  364 (407)
Q Consensus       300 ----~-~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r--l~~~l~~P~~iavd-p~~g~lywtd~  364 (407)
                          . ..+ .|.+|++|.-+ +||.+.  . +.|.+++.+|...  +..... |.+++.. |..+.||.+..
T Consensus       210 ~~~~~~~~~-~p~~i~~d~~G-~l~v~~--~-~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          210 GVHFTVEPG-KTDGLRVDAGG-LIWASA--G-DGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             EEEECCSSS-CCCSEEEBTTS-CEEEEE--T-TEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEET
T ss_pred             CeEeeCCCC-CCCeEEECCCC-CEEEEc--C-CeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcC
Confidence                1 223 78999999865 688888  4 6899999886532  222333 9999995 66677888863

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.03  E-value=7.8e-07  Score=83.70  Aligned_cols=263  Identities=9%  Similarity=0.007  Sum_probs=157.9

Q ss_pred             CCCEEEEEEcCCCCeEEEEeCCCCC--eEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecC--CCeEEEEc--c
Q psy950           43 LPRLLYWIDYGQYPRIGKSYLDGSK--WTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN--GGNRQIIR--R  116 (407)
Q Consensus        43 ~~g~lywtd~~~~~~I~r~~~dG~~--~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~d--G~~~~~~~--~  116 (407)
                      .++++|.++.... .|...+++.+.  ...........|.++++++.++.||++....+.|...+++  +...+.+.  .
T Consensus         3 ~~~~l~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   81 (343)
T 1ri6_A            3 LKQTVYIASPESQ-QIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA   81 (343)
T ss_dssp             CEEEEEEEEGGGT-EEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             ceEEEEEeCCCCC-eEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc
Confidence            4578898876543 88888887433  2221122345799999999999999999887888887776  44433222  2


Q ss_pred             CCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccc
Q psy950          117 NLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQ  194 (407)
Q Consensus       117 ~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~  194 (407)
                      ....|.++++..  ..||.+....+.|...+... +.  ....+.          ....      .         ..+..
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~--~~~~~~----------~~~~------~---------~~~~~  133 (343)
T 1ri6_A           82 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED-GL--PVGVVD----------VVEG------L---------DGCHS  133 (343)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET-TE--EEEEEE----------EECC------C---------TTBCC
T ss_pred             cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCC-Cc--cccccc----------cccC------C---------CCceE
Confidence            233899999976  57999988777676665532 11  111110          0000      0         00111


Q ss_pred             cceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCC-CCCeee---eEeecCCcceEEE
Q psy950          195 LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDP-TLTAVP---FKTVSNLTNVVGV  268 (407)
Q Consensus       195 lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~-~~~~~~---~~~~~~~~~~~al  268 (407)
                      +++                       .+|++       +++++.  ...|..+.+.. ......   .........+.++
T Consensus       134 ~~~-----------------------s~dg~-------~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (343)
T 1ri6_A          134 ANI-----------------------SPDNR-------TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM  183 (343)
T ss_dssp             CEE-----------------------CTTSS-------EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred             EEE-----------------------CCCCC-------EEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceE
Confidence            111                       12221       122221  23344444433 111110   1122233467789


Q ss_pred             EEEcCCCEEEEEEecCCceEEEEeCCCC--ccc--c---cCC------CCccEEEEeccCCeEEEEeCCCCCeEEEEECC
Q psy950          269 EFDYADDKILFTQIRPWAKIAWIPTTNP--SSA--S---SNL------TNVVGVEFDYADDKILFTQIRPWAKIAWIPTT  335 (407)
Q Consensus       269 d~d~~~~~lywsd~~~~~~I~~~~~~~~--~~~--~---~~~------~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~  335 (407)
                      .+++.++++|+++... +.|...+++..  ...  .   .+.      ..+.++++++-++.||.++... +.|.+.+++
T Consensus       184 ~~~pdg~~l~~~~~~~-~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~-~~i~v~d~~  261 (343)
T 1ri6_A          184 VFHPNEQYAYCVNELN-SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA-SLITVFSVS  261 (343)
T ss_dssp             EECTTSSEEEEEETTT-TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-TEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCC-CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC-CEEEEEEEc
Confidence            9999999999998777 78888888541  111  0   111      1455799999999999999887 789999887


Q ss_pred             --CCc-c-c--ccCCCceeEEEEcCCCCeEEEEeCCC
Q psy950          336 --NPS-S-A--SSNLTNVVGVEFDYADDKILFTQIRP  366 (407)
Q Consensus       336 --~~~-r-l--~~~l~~P~~iavdp~~g~lywtd~~~  366 (407)
                        +.. . +  ......|.+++++|...+||.+...+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  298 (343)
T 1ri6_A          262 EDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS  298 (343)
T ss_dssp             TTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT
T ss_pred             CCCCceEEeeeecCCCccceEEECCCCCEEEEecCCC
Confidence              322 2 2  22234499999999988899987543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.99  E-value=1e-06  Score=84.43  Aligned_cols=283  Identities=8%  Similarity=0.021  Sum_probs=165.5

Q ss_pred             CcceEEEeCCCCEEEEEEcCC--CCeEEEEeCCCCC--eEEEEeCCCCCceeEEEeCCCCeEEEEeC---CCCeEEEEec
Q psy950           34 ANTTSPFSPLPRLLYWIDYGQ--YPRIGKSYLDGSK--WTSIVSNGISMPRDLTIDMQTHDVYWVDA---KLDLIQKISY  106 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~~~--~~~I~r~~~dG~~--~~~l~~~~~~~P~glaiD~~~~~lYw~d~---~~~~I~~~~~  106 (407)
                      +|..++..+...++|...+..  ...|....+|...  .+.+.......|.+|++++.++.||.++.   ..+.|...++
T Consensus         3 ~p~~~~~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~   82 (361)
T 3scy_A            3 QPTDPSTTDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAF   82 (361)
T ss_dssp             ---CCCGGGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEE
T ss_pred             CCCChhhCCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEE
Confidence            466666666667778776532  2377777776432  22222214668999999999999999998   3467765555


Q ss_pred             CC--CeEEEEc---cCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCC
Q psy950          107 NG--GNRQIIR---RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDEN  181 (407)
Q Consensus       107 dG--~~~~~~~---~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~  181 (407)
                      +.  ...+.+.   .....|.+++++++.||.++...+.|...+....+.   .       ..+.. .+.+...    +.
T Consensus        83 ~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~---~-------~~~~~-~~~~~g~----~~  147 (361)
T 3scy_A           83 DKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGA---L-------LPASD-VIEFKGS----GP  147 (361)
T ss_dssp             ETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSC---B-------CSCSE-EEECCCC----CS
T ss_pred             eCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCc---C-------cccce-eEEccCC----CC
Confidence            43  3333322   356789999997789999998888877777653111   0       00000 0111111    11


Q ss_pred             CCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCC-------C
Q psy950          182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTL-------T  252 (407)
Q Consensus       182 n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~-------~  252 (407)
                      ++-..    ...               ...|.     .+.+|++       +|+++.  ...+..+.++...       .
T Consensus       148 ~~~~~----~~~---------------~~~~~-----~~spdg~-------~l~~~~~~~~~v~v~~~~~~~~~~~~~~l  196 (361)
T 3scy_A          148 DKERQ----TMP---------------HLHCV-----RITPDGK-------YLLADDLGTDQIHKFNINPNANADNKEKF  196 (361)
T ss_dssp             CTTTC----SSC---------------CEEEE-----EECTTSS-------EEEEEETTTTEEEEEEECTTCCTTTCCCC
T ss_pred             Ccccc----CCC---------------cceEE-----EECCCCC-------EEEEEeCCCCEEEEEEEcCCCCcccccce
Confidence            11000    000               01111     1223332       233332  2234444444322       1


Q ss_pred             ee----eeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc---------cCCCCccEEEEeccCCeEE
Q psy950          253 AV----PFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS---------SNLTNVVGVEFDYADDKIL  319 (407)
Q Consensus       253 ~~----~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~---------~~~~~~~glAvDwi~~~LY  319 (407)
                      ..    ..........+.++.|++.++++|.++... +.|..+++++.....         ... .+.+|++++.++.||
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-~~v~v~~~~~g~~~~~~~~~~~~~~~~-~~~~i~~spdg~~l~  274 (361)
T 3scy_A          197 LTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG-GTVIAFRYADGMLDEIQTVAADTVNAQ-GSGDIHLSPDGKYLY  274 (361)
T ss_dssp             EEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT-CEEEEEEEETTEEEEEEEEESCSSCCC-CEEEEEECTTSSEEE
T ss_pred             eecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC-CeEEEEEecCCceEEeEEEecCCCCCC-CcccEEECCCCCEEE
Confidence            10    122233445678899999999999999777 778887776433211         112 567999999999999


Q ss_pred             EEeCC-CCCeEEEEECC---CCcc-cc--cCCCceeEEEEcCCCCeEEEEeCC
Q psy950          320 FTQIR-PWAKIAWIPTT---NPSS-AS--SNLTNVVGVEFDYADDKILFTQIR  365 (407)
Q Consensus       320 wtd~~-~~~~I~v~~~~---~~~r-l~--~~l~~P~~iavdp~~g~lywtd~~  365 (407)
                      .++.. . ++|.+.+++   +... +.  ..-..|++++++|...+||.++..
T Consensus       275 v~~~~~~-~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~  326 (361)
T 3scy_A          275 ASNRLKA-DGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRD  326 (361)
T ss_dssp             EEECSSS-CEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred             EECCCCC-CEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECC
Confidence            99998 6 789998875   2212 11  124689999999998899999853

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.98  E-value=1.3e-07  Score=89.99  Aligned_cols=114  Identities=17%  Similarity=0.142  Sum_probs=90.6

Q ss_pred             CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeC----CCCCceeEEEeCCCCeEEEEeCC-----------
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSN----GISMPRDLTIDMQTHDVYWVDAK-----------   97 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~----~~~~P~glaiD~~~~~lYw~d~~-----------   97 (407)
                      ..|.+|++|+..|.||++|...  .|.+.+.++...+.+...    .+..|++|++|+..++||++|..           
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~~--~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~  157 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCYY--HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI  157 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETTT--EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred             CCCceEEEcCCCCcEEEEECCC--CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence            4699999999779999999863  688888886555555421    24579999999855699999975           


Q ss_pred             ------CCeEEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCC
Q psy950           98 ------LDLIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus        98 ------~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~  148 (407)
                            .+.|.+.+.++...+.+...+..|.||++..  +.||++|...++|.+.+..+
T Consensus       158 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          158 MDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             HHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             hcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence                  2679999888766666666678999999986  47999999989999998775

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.98  E-value=1.6e-07  Score=88.26  Aligned_cols=77  Identities=5%  Similarity=-0.051  Sum_probs=59.6

Q ss_pred             EEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEccCCCCceEEEEeC-CEEEEEeCCCCeEEEEecC
Q psy950           69 TSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKL  147 (407)
Q Consensus        69 ~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~  147 (407)
                      +.++......++|.+.|+.++.|||+|...++|.+.+.++...+.+. ....|.++++.. +.+|.+.  ...|.+.+..
T Consensus         5 ~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~   81 (297)
T 3g4e_A            5 ECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWK   81 (297)
T ss_dssp             EEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETT
T ss_pred             EEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECC
Confidence            45566677799999999999999999999999999999887664433 335788999876 5666664  3567777765


Q ss_pred             C
Q psy950          148 A  148 (407)
Q Consensus       148 ~  148 (407)
                      +
T Consensus        82 ~   82 (297)
T 3g4e_A           82 E   82 (297)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.97  E-value=3.4e-07  Score=84.62  Aligned_cols=191  Identities=15%  Similarity=0.156  Sum_probs=129.3

Q ss_pred             CCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcc
Q psy950           77 SMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITL  154 (407)
Q Consensus        77 ~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~  154 (407)
                      ..+.|||.|+.+++||.+....++|..++.+|.-.+.+. .....+-||++.+ +.+|.++-..+++...+...  .. .
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~--~~-~  103 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP--NS-E  103 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT--TC-C
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC--CC-e
Confidence            579999999999999997777999999999987665543 5568999999988 56556666666666555443  00 0


Q ss_pred             cEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceee
Q psy950          155 PTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYL  234 (407)
Q Consensus       155 ~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~L  234 (407)
                      ...             ......+. ..                                       .             
T Consensus       104 i~~-------------~~~~~~~~-~~---------------------------------------~-------------  117 (255)
T 3qqz_A          104 VKI-------------LKKIKIPL-QE---------------------------------------S-------------  117 (255)
T ss_dssp             EEE-------------EEEEECCC-SS---------------------------------------C-------------
T ss_pred             eee-------------eeeecccc-cc---------------------------------------c-------------
Confidence            000             00000000 00                                       0             


Q ss_pred             eeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeC--CCC--ccc--------ccC
Q psy950          235 VFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPT--TNP--SSA--------SSN  302 (407)
Q Consensus       235 l~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~--~~~--~~~--------~~~  302 (407)
                                    +           ......||+||+.+++||.+.......|+.++.  .+.  ...        ..+
T Consensus       118 --------------~-----------~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~  172 (255)
T 3qqz_A          118 --------------P-----------TNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL  172 (255)
T ss_dssp             --------------C-----------CSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred             --------------c-----------ccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence                          0           001145788999989999887765246777761  111  111        034


Q ss_pred             CCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc----cc-------cCCCceeEEEEcCCCCeEEEEeC
Q psy950          303 LTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS----AS-------SNLTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       303 ~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r----l~-------~~l~~P~~iavdp~~g~lywtd~  364 (407)
                      . .+.+|++|+.+++||...... +.+..++.+|.-+    +.       ....+|+|||+|| .|.||-+.-
T Consensus       173 ~-d~S~l~~dp~tg~lliLS~~s-~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIvsE  242 (255)
T 3qqz_A          173 D-DVSGAEFNQQKNTLLVLSHES-RALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIVSE  242 (255)
T ss_dssp             S-CCCEEEEETTTTEEEEEETTT-TEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEEET
T ss_pred             C-CceeEEEcCCCCeEEEEECCC-CeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECC-CCCEEEEcC
Confidence            4 789999999999999999998 8999999888732    22       2347999999999 578999963

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.93  E-value=7.3e-06  Score=78.99  Aligned_cols=239  Identities=13%  Similarity=0.154  Sum_probs=158.1

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR  111 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~  111 (407)
                      -..|.+++++|...+||.+..... .|...++........+... ..|.++++++.+++||++....+.|...++.....
T Consensus        31 ~~~~~~~~~s~dg~~l~~~~~~d~-~i~v~d~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~  108 (391)
T 1l0q_A           31 GSNPMGAVISPDGTKVYVANAHSN-DVSIIDTATNNVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV  108 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGT-EEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCcceEEECCCCCEEEEECCCCC-eEEEEECCCCeEEEEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeE
Confidence            346999999999999999986553 8998888654444444432 38999999999999999998889999999987665


Q ss_pred             EEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCc
Q psy950          112 QIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGN  189 (407)
Q Consensus       112 ~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~n  189 (407)
                      .........|.++++..  ..||.+....+.|...+..+ +  .....+... ..|.                       
T Consensus       109 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~--~~~~~~~~~-~~~~-----------------------  161 (391)
T 1l0q_A          109 AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-K--AVINTVSVG-RSPK-----------------------  161 (391)
T ss_dssp             EEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-T--EEEEEEECC-SSEE-----------------------
T ss_pred             EEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-C--cEEEEEecC-CCcc-----------------------
Confidence            44444456789999875  57889988888888887664 2  111111100 0000                       


Q ss_pred             ccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCCeeeeEeecCCcceEE
Q psy950          190 GGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLTAVPFKTVSNLTNVVG  267 (407)
Q Consensus       190 g~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~~~~~~~~~~~~~~~a  267 (407)
                          .+++                       .+|++       .|+++.  ...|..+.+....   ....+.....+.+
T Consensus       162 ----~~~~-----------------------~~dg~-------~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~  204 (391)
T 1l0q_A          162 ----GIAV-----------------------TPDGT-------KVYVANFDSMSISVIDTVTNS---VIDTVKVEAAPSG  204 (391)
T ss_dssp             ----EEEE-----------------------CTTSS-------EEEEEETTTTEEEEEETTTTE---EEEEEECSSEEEE
T ss_pred             ----eEEE-----------------------CCCCC-------EEEEEeCCCCEEEEEECCCCe---EEEEEecCCCccc
Confidence                1111                       11111       111111  1234434433221   1112223345778


Q ss_pred             EEEEcCCCEEEEEEe--cCCceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc
Q psy950          268 VEFDYADDKILFTQI--RPWAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS  338 (407)
Q Consensus       268 ld~d~~~~~lywsd~--~~~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~  338 (407)
                      +.+++.+++||.+..  .. +.|...++.+.....  .....+.++++++.++.||.+.... ++|.+.++....
T Consensus       205 ~~~~~~g~~l~~~~~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d-~~v~v~d~~~~~  277 (391)
T 1l0q_A          205 IAVNPEGTKAYVTNVDKYF-NTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFX-NTVSVIDTATNT  277 (391)
T ss_dssp             EEECTTSSEEEEEEECSSC-CEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT-TEEEEEETTTTE
T ss_pred             eEECCCCCEEEEEecCcCC-CcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCC-CEEEEEECCCCc
Confidence            899999999999986  45 779999987655433  2233788999999999999998888 899999987654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.92  E-value=2.7e-07  Score=89.60  Aligned_cols=109  Identities=17%  Similarity=0.165  Sum_probs=84.0

Q ss_pred             CCCCcceEEEeCC---CCEEEEEEcC--CC----CeEEEEeCCCC-----CeEEEEe----CCCCCceeEEEeCCCCeEE
Q psy950           31 FRSANTTSPFSPL---PRLLYWIDYG--QY----PRIGKSYLDGS-----KWTSIVS----NGISMPRDLTIDMQTHDVY   92 (407)
Q Consensus        31 ~~~~P~~iavdp~---~g~lywtd~~--~~----~~I~r~~~dG~-----~~~~l~~----~~~~~P~glaiD~~~~~lY   92 (407)
                      +...|.+||++|.   +|+||+++..  ..    .+|.|...++.     ..++++.    .....|.+|++++. ++||
T Consensus        71 g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pD-G~Ly  149 (354)
T 3a9g_A           71 GEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPD-GMLY  149 (354)
T ss_dssp             TTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTT-SCEE
T ss_pred             CCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCC-CcEE
Confidence            4567999999998   8999999863  11    48999999876     2445543    22447899999995 5899


Q ss_pred             EEeCC-------------CCeEEEEecCCC--------eEEEEccCCCCceEEEEeC--CEEEEEeCCCCe
Q psy950           93 WVDAK-------------LDLIQKISYNGG--------NRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRT  140 (407)
Q Consensus        93 w~d~~-------------~~~I~~~~~dG~--------~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~  140 (407)
                      ++...             .++|.+++.||+        ..+++...+.+|+||+++.  +.||.+|...+.
T Consensus       150 vt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~  220 (354)
T 3a9g_A          150 ITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVG  220 (354)
T ss_dssp             EECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSS
T ss_pred             EEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCC
Confidence            99642             368999999997        4456667789999999986  789999876543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.90  E-value=1.3e-06  Score=82.60  Aligned_cols=115  Identities=9%  Similarity=-0.008  Sum_probs=85.7

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCC-CeEEEEeCCCCCeEEEEe-CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCC
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQY-PRIGKSYLDGSKWTSIVS-NGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGG  109 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~-~~I~r~~~dG~~~~~l~~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~  109 (407)
                      -..|.+|++|+. |.||.+|.+.. .+|.+.+......+.+.. .....|+|++++. .+++|++|...+.|.+++.++.
T Consensus        71 ~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A           71 EGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             SSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTT
T ss_pred             CCCceeEEEcCC-CcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCC
Confidence            357999999988 66999997643 268887754333444444 3456789999754 6789999998999999998865


Q ss_pred             eEEEE-----------ccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCC
Q psy950          110 NRQII-----------RRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       110 ~~~~~-----------~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~  148 (407)
                      ..++.           ...+..|.||+.+++.||++|...++|.+.+...
T Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          149 SGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             EEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCT
T ss_pred             cEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCC
Confidence            33222           1346789999878889999999999998887653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.89  E-value=1.2e-07  Score=91.90  Aligned_cols=110  Identities=12%  Similarity=0.129  Sum_probs=82.4

Q ss_pred             CCCCCcceEEEeCC---CCEEEEEEcCC----CCeEEEEeCCCC---CeEEEEe------CCCCCceeEEEeCCCCeEEE
Q psy950           30 SFRSANTTSPFSPL---PRLLYWIDYGQ----YPRIGKSYLDGS---KWTSIVS------NGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        30 ~~~~~P~~iavdp~---~g~lywtd~~~----~~~I~r~~~dG~---~~~~l~~------~~~~~P~glaiD~~~~~lYw   93 (407)
                      .+...|.+||++|.   +++||+++...    ..+|.|...++.   ..++++.      .....|.+|++++. ++||+
T Consensus        72 ~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd-G~Lyv  150 (352)
T 2ism_A           72 RGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD-GMLYV  150 (352)
T ss_dssp             STTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT-SCEEE
T ss_pred             cCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC-CCEEE
Confidence            34567999999998   89999998743    148999999864   3444543      12347899999995 58999


Q ss_pred             EeCC-------------CCeEEEEecCC-------------CeEEEEccCCCCceEEEEeC--CEEEEEeCCCCe
Q psy950           94 VDAK-------------LDLIQKISYNG-------------GNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRT  140 (407)
Q Consensus        94 ~d~~-------------~~~I~~~~~dG-------------~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~  140 (407)
                      ++..             .++|.+++.+|             ...+++...+.+|+||+++.  +.||.+|...+.
T Consensus       151 ~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~  225 (352)
T 2ism_A          151 TTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSG  225 (352)
T ss_dssp             ECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC--
T ss_pred             EECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCC
Confidence            9742             36899999998             33455556788999999986  789999866554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.86  E-value=5.6e-06  Score=79.83  Aligned_cols=252  Identities=16%  Similarity=0.139  Sum_probs=162.3

Q ss_pred             CEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEccCCCCceEE
Q psy950           45 RLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGI  124 (407)
Q Consensus        45 g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~l  124 (407)
                      +++|.+.... ..|...+++.......+. ....|.++++++.++.||++....+.|...++..............+.++
T Consensus         2 ~~l~vs~~~d-~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~   79 (391)
T 1l0q_A            2 TFAYIANSES-DNISVIDVTSNKVTATIP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGV   79 (391)
T ss_dssp             EEEEEEETTT-TEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred             CEEEEEcCCC-CEEEEEECCCCeEEEEee-cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccce
Confidence            5677777655 388888887544433444 23468999999999999999988899999998755543333333488899


Q ss_pred             EEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCC
Q psy950          125 AVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVE  202 (407)
Q Consensus       125 av~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~  202 (407)
                      ++..  .+||.+....+.|...+..+ +  .....+.. -..+.                           .+++     
T Consensus        80 ~~spdg~~l~~~~~~~~~v~v~d~~~-~--~~~~~~~~-~~~~~---------------------------~~~~-----  123 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMASSTLSVIDTTS-N--TVAGTVKT-GKSPL---------------------------GLAL-----  123 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTT-T--EEEEEEEC-SSSEE---------------------------EEEE-----
T ss_pred             EECCCCCEEEEEECCCCEEEEEECCC-C--eEEEEEeC-CCCcc---------------------------eEEE-----
Confidence            9875  67999988778888888765 2  11111110 00011                           1111     


Q ss_pred             CCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEE
Q psy950          203 FPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFT  280 (407)
Q Consensus       203 ~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lyws  280 (407)
                                        .+|++       .|+++.  ...|....+....   ....+.....+.++.+++.++.||++
T Consensus       124 ------------------s~dg~-------~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~dg~~l~~~  175 (391)
T 1l0q_A          124 ------------------SPDGK-------KLYVTNNGDKTVSVINTVTKA---VINTVSVGRSPKGIAVTPDGTKVYVA  175 (391)
T ss_dssp             ------------------CTTSS-------EEEEEETTTTEEEEEETTTTE---EEEEEECCSSEEEEEECTTSSEEEEE
T ss_pred             ------------------CCCCC-------EEEEEeCCCCEEEEEECCCCc---EEEEEecCCCcceEEECCCCCEEEEE
Confidence                              11111       011111  1223333332211   11122233456788999999999999


Q ss_pred             EecCCceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeC--CCCCeEEEEECCCCcc--cccCCCceeEEEEcC
Q psy950          281 QIRPWAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQI--RPWAKIAWIPTTNPSS--ASSNLTNVVGVEFDY  354 (407)
Q Consensus       281 d~~~~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~--~~~~~I~v~~~~~~~r--l~~~l~~P~~iavdp  354 (407)
                      .... +.|+..++.+.....  .....+.++++++.++.||.+..  .. +.|.+.++.....  .......|.+++++|
T Consensus       176 ~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~  253 (391)
T 1l0q_A          176 NFDS-MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYF-NTVSMIDTGTNKITARIPVGPDPAGIAVTP  253 (391)
T ss_dssp             ETTT-TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSC-CEEEEEETTTTEEEEEEECCSSEEEEEECT
T ss_pred             eCCC-CEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCC-CcEEEEECCCCeEEEEEecCCCccEEEEcc
Confidence            8877 889999987665433  23337889999999999999986  55 6899999887653  233445789999999


Q ss_pred             CCCeEEEEeC
Q psy950          355 ADDKILFTQI  364 (407)
Q Consensus       355 ~~g~lywtd~  364 (407)
                      ...+||.+..
T Consensus       254 dg~~l~~s~~  263 (391)
T 1l0q_A          254 DGKKVYVALS  263 (391)
T ss_dssp             TSSEEEEEET
T ss_pred             CCCEEEEEcC
Confidence            9888988854

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=98.86  E-value=9.3e-10  Score=80.44  Aligned_cols=47  Identities=34%  Similarity=0.670  Sum_probs=41.0

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccccccee
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY  233 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~  233 (407)
                      ..|+|.. +||+|+|+|++++++      +|.|.|+.||.|.+|+++|.+.++|
T Consensus         4 d~~eC~~-~nggC~h~C~n~~g~------s~~C~C~~Gy~L~~D~~tC~d~dec   50 (69)
T 1kli_L            4 DQLICVN-ENGGCEQYCSDHTGT------KRSCRCHEGYSLLADGVSCTPTVEY   50 (69)
T ss_dssp             CCCCTTS-GGGGCSSEEEEETTT------EEEEECCTTEEECTTSSCEEECSSS
T ss_pred             ccccccC-CCCCcCCEeEcCCCC------CEEEeCCCCCeECCCCCcccCcccc
Confidence            4689987 899999999998873      6999999999999999999865554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.85  E-value=3.7e-06  Score=80.02  Aligned_cols=270  Identities=12%  Similarity=0.077  Sum_probs=158.0

Q ss_pred             CEEEEEEcCC--CCeEEEEeCCCCC-e-EEE-EeCCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCCeEEEEc--
Q psy950           45 RLLYWIDYGQ--YPRIGKSYLDGSK-W-TSI-VSNGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGGNRQIIR--  115 (407)
Q Consensus        45 g~lywtd~~~--~~~I~r~~~dG~~-~-~~l-~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~~~~~~~--  115 (407)
                      .+||...+..  ...|....+|... . +.+ .......|.+|++++.++ ||+++..  .+.|...++++...+.+.  
T Consensus         3 ~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~   81 (347)
T 3hfq_A            3 ERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV   81 (347)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee
Confidence            4677776531  2367777777532 2 111 112356899999999665 9999864  678999998766543332  


Q ss_pred             -cCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccc
Q psy950          116 -RNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGC  192 (407)
Q Consensus       116 -~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~C  192 (407)
                       .....|.+|++.+  ..||.++...+.|...+....+.   ...+.         .+.+.      +..|... ..+. 
T Consensus        82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~---~~~~~---------~~~~~------~~~p~~~-~~~~-  141 (347)
T 3hfq_A           82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA---LTLTD---------TVQHS------GHGPRPE-QDGS-  141 (347)
T ss_dssp             EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC---EEEEE---------EEECC------CCCSSTT-CSSC-
T ss_pred             ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC---eeecc---------eeecC------CCCCCcc-ccCC-
Confidence             3567899999986  57999988777776666543121   11111         00110      0111100 0000 


Q ss_pred             cccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCCeeee--EeecCCcceEEE
Q psy950          193 EQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLTAVPF--KTVSNLTNVVGV  268 (407)
Q Consensus       193 s~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~~~~~--~~~~~~~~~~al  268 (407)
                                      ...|.     .+.+|++        ++++.  ...|..+.+.....-...  ........+..+
T Consensus       142 ----------------~~~~~-----~~spdg~--------l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~  192 (347)
T 3hfq_A          142 ----------------HIHYT-----DLTPDNR--------LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL  192 (347)
T ss_dssp             ----------------CEEEE-----EECTTSC--------EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEE
T ss_pred             ----------------CceEE-----EECCCCc--------EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceE
Confidence                            00111     1223332        22221  223444444421111111  122233457789


Q ss_pred             EEEcCCCEEEEEEecCCceEEEEeCCC--Cccc-c----cCC------CCccEEEEeccCCeEEEEeCCCCCeEEEEECC
Q psy950          269 EFDYADDKILFTQIRPWAKIAWIPTTN--PSSA-S----SNL------TNVVGVEFDYADDKILFTQIRPWAKIAWIPTT  335 (407)
Q Consensus       269 d~d~~~~~lywsd~~~~~~I~~~~~~~--~~~~-~----~~~------~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~  335 (407)
                      +|++.++++|+++... +.|....++.  .... .    ...      ..+.++++++.++.||.++... ++|.+.+++
T Consensus       193 ~~spdg~~l~v~~~~~-~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~-~~v~v~~~~  270 (347)
T 3hfq_A          193 VFSPDGQYAFLAGELS-SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY-NTLAVFAVT  270 (347)
T ss_dssp             EECTTSSEEEEEETTT-TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT-TEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCC-CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC-CEEEEEEEC
Confidence            9999999999998877 7777766653  2211 0    111      1478899999999999999888 799999886


Q ss_pred             CCc--c-c---ccCCCceeEEEEcCCCCeEEEEeCCC
Q psy950          336 NPS--S-A---SSNLTNVVGVEFDYADDKILFTQIRP  366 (407)
Q Consensus       336 ~~~--r-l---~~~l~~P~~iavdp~~g~lywtd~~~  366 (407)
                      ...  . +   ......|++++++|...+||.++...
T Consensus       271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  307 (347)
T 3hfq_A          271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT  307 (347)
T ss_dssp             GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT
T ss_pred             CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC
Confidence            321  2 2   22346799999999988999998753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.84  E-value=4.7e-06  Score=79.41  Aligned_cols=226  Identities=11%  Similarity=0.062  Sum_probs=141.3

Q ss_pred             eEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEE
Q psy950           25 KKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKI  104 (407)
Q Consensus        25 ~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~  104 (407)
                      +.+......-|.+.+.||..+.+||+|.... +|.+.+.++...+.+..  -..|.+|++++. +++|++.  .+.|..+
T Consensus        41 ~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~-~i~~~d~~~~~~~~~~~--~~~v~~i~~~~d-g~l~v~~--~~gl~~~  114 (326)
T 2ghs_A           41 RVLDETPMLLGEGPTFDPASGTAWWFNILER-ELHELHLASGRKTVHAL--PFMGSALAKISD-SKQLIAS--DDGLFLR  114 (326)
T ss_dssp             EEEECSCCSBEEEEEEETTTTEEEEEEGGGT-EEEEEETTTTEEEEEEC--SSCEEEEEEEET-TEEEEEE--TTEEEEE
T ss_pred             EEeeccCCCCCcCCeEeCCCCEEEEEECCCC-EEEEEECCCCcEEEEEC--CCcceEEEEeCC-CeEEEEE--CCCEEEE
Confidence            4445555667899999999999999998754 99999998765544332  247899999985 6677765  3458888


Q ss_pred             ecCCCeEEEEccC-----CCCceEEEEeC-CEEEEEeCCC------CeEEEEecCCCCCCcccEEcccCCCCceeeEEee
Q psy950          105 SYNGGNRQIIRRN-----LPNPMGIAVHK-SDVYWVDRNL------RTVYKASKLASTNITLPTPIRTGLSGLRDIAIFD  172 (407)
Q Consensus       105 ~~dG~~~~~~~~~-----~~~P~~lav~~-~~lYwtd~~~------~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~  172 (407)
                      +.++...+.+...     ...|.+++++. +.+|+++...      +.|++++                           
T Consensus       115 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~---------------------------  167 (326)
T 2ghs_A          115 DTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA---------------------------  167 (326)
T ss_dssp             ETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE---------------------------
T ss_pred             ECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe---------------------------
Confidence            8865554433211     12455666655 4555543211      0111111                           


Q ss_pred             ecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCC
Q psy950          173 IVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLT  252 (407)
Q Consensus       173 ~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~  252 (407)
                                                                        ++                .+..+       
T Consensus       168 --------------------------------------------------~g----------------~~~~~-------  174 (326)
T 2ghs_A          168 --------------------------------------------------KG----------------KVTKL-------  174 (326)
T ss_dssp             --------------------------------------------------TT----------------EEEEE-------
T ss_pred             --------------------------------------------------CC----------------cEEEe-------
Confidence                                                              00                00000       


Q ss_pred             eeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCC--CC-cc-----ccc---CCCCccEEEEeccCCeEEEE
Q psy950          253 AVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTT--NP-SS-----ASS---NLTNVVGVEFDYADDKILFT  321 (407)
Q Consensus       253 ~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~--~~-~~-----~~~---~~~~~~glAvDwi~~~LYwt  321 (407)
                            ......+.++.+++.++.+|+++... +.|.+++++  +. ..     ...   ....|.||++|.-+ +||.+
T Consensus       175 ------~~~~~~~~~i~~s~dg~~lyv~~~~~-~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva  246 (326)
T 2ghs_A          175 ------FADISIPNSICFSPDGTTGYFVDTKV-NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNA  246 (326)
T ss_dssp             ------EEEESSEEEEEECTTSCEEEEEETTT-CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEE
T ss_pred             ------eCCCcccCCeEEcCCCCEEEEEECCC-CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEE
Confidence                  00011234667777788888888776 778888764  22 11     111   12278999999765 68888


Q ss_pred             eCCCCCeEEEEECCCCcc--cccCCCceeEEEEc-CCCCeEEEEeCC
Q psy950          322 QIRPWAKIAWIPTTNPSS--ASSNLTNVVGVEFD-YADDKILFTQIR  365 (407)
Q Consensus       322 d~~~~~~I~v~~~~~~~r--l~~~l~~P~~iavd-p~~g~lywtd~~  365 (407)
                      .... +.|.+++.++...  +......|.+++++ |..+.||.+...
T Consensus       247 ~~~~-~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          247 RWGE-GAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EETT-TEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EeCC-CEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            8776 6899998866532  32344679999998 888889988753

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.82  E-value=8.8e-07  Score=86.40  Aligned_cols=266  Identities=8%  Similarity=-0.047  Sum_probs=152.0

Q ss_pred             CCCEEEEEEcCCC--C-eEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC---------CCCeEEEEecCCCe
Q psy950           43 LPRLLYWIDYGQY--P-RIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA---------KLDLIQKISYNGGN  110 (407)
Q Consensus        43 ~~g~lywtd~~~~--~-~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~---------~~~~I~~~~~dG~~  110 (407)
                      ...++|.++.+.+  . +|...+.+.....--+..+ ..| ++++++.+++||+++.         ..+.|..+|+.-..
T Consensus        30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG-~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~  107 (368)
T 1mda_H           30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA-FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL  107 (368)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred             CCCeEEEECCccCCccceEEEEECCCCeEEEEEeCC-CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence            3478999988643  2 5666655543332223333 368 9999999999999983         46889999987554


Q ss_pred             E-EEEc-c------CCCCceEEEEeC--CEEEEEeCC-CCeEEE--EecCCCCCCcccEEcccCCCCceeeEEeeecCCC
Q psy950          111 R-QIIR-R------NLPNPMGIAVHK--SDVYWVDRN-LRTVYK--ASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQP  177 (407)
Q Consensus       111 ~-~~~~-~------~~~~P~~lav~~--~~lYwtd~~-~~~I~~--~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp  177 (407)
                      . ..+. .      .+..|.++++..  .++|.++.. .+.|..  ++..+      ...+.  +               
T Consensus       108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t------v~~i~--v---------------  164 (368)
T 1mda_H          108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD------DQLTK--S---------------  164 (368)
T ss_dssp             EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE------EEEEE--C---------------
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh------ceEEE--C---------------
Confidence            4 3332 2      136799999965  689999875 445554  33221      11111  0               


Q ss_pred             CCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCC--------C---------------Ccccccceee
Q psy950          178 PDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASD--------P---------------KKCTTMDEYL  234 (407)
Q Consensus       178 ~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d--------~---------------~~C~~~~~~L  234 (407)
                                  ++|.|+ .+...      ..|...|+.|..+.-|        +               .........+
T Consensus       165 ------------~~~~~~-~p~g~------~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~  225 (368)
T 1mda_H          165 ------------ASCFHI-HPGAA------ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             ------------SSCCCC-EEEET------TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             ------------CCceEE-ccCCC------eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence                        011111 00000      0122222222110000        0               0011111223


Q ss_pred             eeecccceEEeecCCCCCeeeeEeec--------CCcceEE---EEEEcCCCEEEEEEe---c-----CCceEEEEeCCC
Q psy950          235 VFSTRTEIRALHLDPTLTAVPFKTVS--------NLTNVVG---VEFDYADDKILFTQI---R-----PWAKIAWIPTTN  295 (407)
Q Consensus       235 l~s~~~~I~~i~l~~~~~~~~~~~~~--------~~~~~~a---ld~d~~~~~lywsd~---~-----~~~~I~~~~~~~  295 (407)
                      +|++...+.-+.+...... .+..+.        ....+.+   +.+++.++++|++..   .     . .....+++..
T Consensus       226 ~~vs~~~V~viD~~~~~~~-v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~-~~~~ViD~~t  303 (368)
T 1mda_H          226 VWAVASSILQGDIPAAGAT-MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA-ENTSSVTASV  303 (368)
T ss_dssp             EECBSSCCEEEECCSSCCE-EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCE-EEEEEEESSS
T ss_pred             EEEcCCEEEEEECCCCcce-EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccC-CCEEEEECCC
Confidence            3333355655555332111 111110        1112222   678999999999865   3     3 3456888877


Q ss_pred             Ccccc--cCCCCccEEEEeccCCeEEEEeC-CCCCeEEEEECCCCccc--ccCCCceeEEEEcCC
Q psy950          296 PSSAS--SNLTNVVGVEFDYADDKILFTQI-RPWAKIAWIPTTNPSSA--SSNLTNVVGVEFDYA  355 (407)
Q Consensus       296 ~~~~~--~~~~~~~glAvDwi~~~LYwtd~-~~~~~I~v~~~~~~~rl--~~~l~~P~~iavdp~  355 (407)
                      ...+.  .++..|.||++.+-++.+|+++. .. ++|.|+++.....+  ..-...|.+|++++.
T Consensus       304 ~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~-~~VsVID~~t~kvv~~I~vg~~P~~i~~~~~  367 (368)
T 1mda_H          304 GQTSGPISNGHDSDAIIAAQDGASDNYANSAGT-EVLDIYDAASDQDQSSVELDKGPESLSVQNE  367 (368)
T ss_dssp             CCEEECCEEEEEECEEEECCSSSCEEEEEETTT-TEEEEEESSSCEEEEECCCCSCCCEEECCCC
T ss_pred             CeEEEEEECCCCcceEEECCCCCEEEEEccCCC-CeEEEEECCCCcEEEEEECCCCCCEEEeecC
Confidence            65544  44557999999999999999999 67 89999999887653  335589999999875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.82  E-value=1.7e-06  Score=80.85  Aligned_cols=239  Identities=14%  Similarity=0.144  Sum_probs=136.9

Q ss_pred             EeCCCCCceeEEEeCCCCeEEEE-------eCCCCeEEEEecCCCeEEEEcc-----CCCCceEEEEeC--CEEEEEeCC
Q psy950           72 VSNGISMPRDLTIDMQTHDVYWV-------DAKLDLIQKISYNGGNRQIIRR-----NLPNPMGIAVHK--SDVYWVDRN  137 (407)
Q Consensus        72 ~~~~~~~P~glaiD~~~~~lYw~-------d~~~~~I~~~~~dG~~~~~~~~-----~~~~P~~lav~~--~~lYwtd~~  137 (407)
                      +..++..|.++++|+ .++|||+       +...+.|.+.+......+.+..     ....|.+++++.  +.||+++..
T Consensus        13 ~~~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~   91 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR   91 (314)
T ss_dssp             EECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT
T ss_pred             hhccCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC
Confidence            355788999999995 6799999       8788899999975544433322     346799999976  589999875


Q ss_pred             CCeEEEEecCCCCCCcccEEc-ccC-----CCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceE
Q psy950          138 LRTVYKASKLASTNITLPTPI-RTG-----LSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYK  211 (407)
Q Consensus       138 ~~~I~~~~~~~~g~~~~~~~i-~~~-----~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~  211 (407)
                      . .|.+.+..+  .   ...+ ...     ...|.+|.+..                           .+      .-+.
T Consensus        92 ~-~l~~~d~~g--~---~~~~~~~~~~~~~~~~~~~i~~d~---------------------------~g------~l~v  132 (314)
T 1pjx_A           92 L-GLLVVQTDG--T---FEEIAKKDSEGRRMQGCNDCAFDY---------------------------EG------NLWI  132 (314)
T ss_dssp             T-EEEEEETTS--C---EEECCSBCTTSCBCBCCCEEEECT---------------------------TS------CEEE
T ss_pred             C-CEEEEeCCC--C---EEEEEeccCCCccccCCcCEEECC---------------------------CC------CEEE
Confidence            4 788877653  1   1222 110     01122222110                           00      0011


Q ss_pred             EecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEE----cCCCEEEEEEecCCce
Q psy950          212 CDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFD----YADDKILFTQIRPWAK  287 (407)
Q Consensus       212 C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d----~~~~~lywsd~~~~~~  287 (407)
                      +....+.. ..+.  +...     ......|..+..+ ... ..+  ......+.++.++    +.++.||+++... +.
T Consensus       133 ~~~~~~~~-~~~~--~~~~-----~~~~~~l~~~~~~-g~~-~~~--~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~-~~  199 (314)
T 1pjx_A          133 TAPAGEVA-PADY--TRSM-----QEKFGSIYCFTTD-GQM-IQV--DTAFQFPNGIAVRHMNDGRPYQLIVAETPT-KK  199 (314)
T ss_dssp             EECBCBCT-TSCC--CBTT-----SSSCEEEEEECTT-SCE-EEE--EEEESSEEEEEEEECTTSCEEEEEEEETTT-TE
T ss_pred             EecCcccc-cccc--cccc-----cCCCCeEEEECCC-CCE-EEe--ccCCCCcceEEEecccCCCCCEEEEEECCC-Ce
Confidence            11000000 0000  0000     0001123333322 111 111  1122346678888    7777999999877 78


Q ss_pred             EEEEeCCC-Cc-----ccccCC----CCccEEEEeccCCeEEEEeCCCCCeEEEEECC-CCc-c-cccCCCceeEEEEcC
Q psy950          288 IAWIPTTN-PS-----SASSNL----TNVVGVEFDYADDKILFTQIRPWAKIAWIPTT-NPS-S-ASSNLTNVVGVEFDY  354 (407)
Q Consensus       288 I~~~~~~~-~~-----~~~~~~----~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~-~~~-r-l~~~l~~P~~iavdp  354 (407)
                      |.+.+.++ ..     ....+.    ..|.+|++|.- ++||+++... +.|.+++.+ +.. . +......|.+++++|
T Consensus       200 i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~-G~l~v~~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~  277 (314)
T 1pjx_A          200 LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED-NNLLVANWGS-SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP  277 (314)
T ss_dssp             EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT-CCEEEEEETT-TEEEEECTTCBSCSEEEECSSSCEEEEEECT
T ss_pred             EEEEECCCCCccccceEEEECCCCCCCCCCceEECCC-CCEEEEEcCC-CEEEEEcCCCCcEeEEEeCCCCCceeEEECC
Confidence            88887652 11     111111    26899999984 5899998877 789999987 432 1 222447899999998


Q ss_pred             CCCeEEEEeCC
Q psy950          355 ADDKILFTQIR  365 (407)
Q Consensus       355 ~~g~lywtd~~  365 (407)
                      ...+||.++..
T Consensus       278 dg~~l~v~~~~  288 (314)
T 1pjx_A          278 QTKTIFVTEHE  288 (314)
T ss_dssp             TSSEEEEEETT
T ss_pred             CCCEEEEEeCC
Confidence            87779988753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.82  E-value=1.9e-06  Score=80.13  Aligned_cols=191  Identities=14%  Similarity=0.124  Sum_probs=117.8

Q ss_pred             CCceeEEEeCCCCeEEEEeC--CCCeEEEEecCCCeE-EEE-ccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCC
Q psy950           77 SMPRDLTIDMQTHDVYWVDA--KLDLIQKISYNGGNR-QII-RRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNI  152 (407)
Q Consensus        77 ~~P~glaiD~~~~~lYw~d~--~~~~I~~~~~dG~~~-~~~-~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~  152 (407)
                      ..|.||++++. ++||.+..  ..++|..+++.-... ..+ ......+.|+++.+++||.++|..+.+..++..+    
T Consensus        21 ~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t----   95 (266)
T 2iwa_A           21 AFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRT----   95 (266)
T ss_dssp             CCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTT----
T ss_pred             CCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCC----
Confidence            36899999986 79999975  468999999974443 333 2444566688999999999999999999999775    


Q ss_pred             cccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccce
Q psy950          153 TLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDE  232 (407)
Q Consensus       153 ~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~  232 (407)
                        .+++.. +      .  ..  +|.                                      |+-|.+|++       
T Consensus        96 --~~v~~~-i------~--~g--~~~--------------------------------------g~glt~Dg~-------  117 (266)
T 2iwa_A           96 --LSNIKN-F------T--HQ--MKD--------------------------------------GWGLATDGK-------  117 (266)
T ss_dssp             --TEEEEE-E------E--CC--SSS--------------------------------------CCEEEECSS-------
T ss_pred             --CcEEEE-E------E--CC--CCC--------------------------------------eEEEEECCC-------
Confidence              222220 0      0  00  010                                      111111221       


Q ss_pred             eeeeecc-cceEEeecCCCCCee-eeEeec----CCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--cCC-
Q psy950          233 YLVFSTR-TEIRALHLDPTLTAV-PFKTVS----NLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SNL-  303 (407)
Q Consensus       233 ~Ll~s~~-~~I~~i~l~~~~~~~-~~~~~~----~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~-  303 (407)
                      .|+.++. ..+.-+  ++..... ...++.    .+..+-.+++.  +++||...... +.|.+++..+..++.  .++ 
T Consensus       118 ~l~vs~gs~~l~vi--D~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~-~~V~vID~~tg~V~~~I~~~g  192 (266)
T 2iwa_A          118 ILYGSDGTSILYEI--DPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQT-DCIARISAKDGTLLGWILLPN  192 (266)
T ss_dssp             SEEEECSSSEEEEE--CTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTS-SEEEEEETTTCCEEEEEECHH
T ss_pred             EEEEECCCCeEEEE--ECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCC-CeEEEEECCCCcEEEEEECCC
Confidence            0222221 122222  2211111 011111    11234567776  67899887777 889999997765443  221 


Q ss_pred             -------------CCccEEEEeccCCeEEEEeCCCCCeEEEEECCC
Q psy950          304 -------------TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTN  336 (407)
Q Consensus       304 -------------~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~  336 (407)
                                   ..+.|||+|.-++.||.|.... +++.++++..
T Consensus       193 ~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~-~~v~~i~l~~  237 (266)
T 2iwa_A          193 LRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW-PKLFEIKLHL  237 (266)
T ss_dssp             HHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC-SEEEEEEEEE
T ss_pred             cccccccccccccCceEEEEEcCCCCEEEEECCCC-CeEEEEEEec
Confidence                         2668999999999999999988 8999987653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.82  E-value=1.4e-06  Score=86.52  Aligned_cols=280  Identities=5%  Similarity=-0.040  Sum_probs=155.1

Q ss_pred             eeeeecCCcceEEEcCCC-CCcceEEEeCCCCEEEEEEcC--------CCCeEEEEeCCCCCe-EEEEeC---C---CCC
Q psy950           15 RLALRLLKKKKKLKTSFR-SANTTSPFSPLPRLLYWIDYG--------QYPRIGKSYLDGSKW-TSIVSN---G---ISM   78 (407)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~-~~P~~iavdp~~g~lywtd~~--------~~~~I~r~~~dG~~~-~~l~~~---~---~~~   78 (407)
                      .+..+|....+++-.-.+ ..| +|+++|..++||.++..        ....|...+...... ..|.-.   .   ...
T Consensus       100 ~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~  178 (426)
T 3c75_H          100 QQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTY  178 (426)
T ss_dssp             EEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred             eEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCC
Confidence            455666655554433222 358 99999999999999862        123677777654333 223221   0   247


Q ss_pred             ceeEEEeCCCCeEEEEeCC-CCeEEEEecCCCeE-EEEccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccE
Q psy950           79 PRDLTIDMQTHDVYWVDAK-LDLIQKISYNGGNR-QIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPT  156 (407)
Q Consensus        79 P~glaiD~~~~~lYw~d~~-~~~I~~~~~dG~~~-~~~~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~  156 (407)
                      |.++++++.+++||+++.. .+.|.++|+..... ..+.-  ....++.-.+...|.+....+++..++... ++   ..
T Consensus       179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v--~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~-~~---v~  252 (426)
T 3c75_H          179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV--PDCYHIFPASPTVFYMNCRDGSLARVDFAD-GE---TK  252 (426)
T ss_dssp             GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CSEEEEEEEETTEEEEEETTSSEEEEECCT-TC---CE
T ss_pred             cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc--CCceeeccCCCcEEEEEcCCCCEEEEECCC-Cc---EE
Confidence            9999999999999999975 78999999976654 23221  111223333456666666666666666532 21   11


Q ss_pred             EcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeee
Q psy950          157 PIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVF  236 (407)
Q Consensus       157 ~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~  236 (407)
                      ....        .+++...+|      -..  +                            ..+.++++      .+++.
T Consensus       253 ~~~~--------~~~~v~~~p------~~~--~----------------------------~~~~~dg~------~~~~~  282 (426)
T 3c75_H          253 VTNT--------EVFHTEDEL------LIN--H----------------------------PAFSLRSG------RLVWP  282 (426)
T ss_dssp             EEEC--------CCCSCTTSC------BCS--C----------------------------CEECTTTC------EEEEE
T ss_pred             EEee--------eeeccCCCc------eee--E----------------------------eeecCCCC------EEEEE
Confidence            1000        111111111      100  0                            00011111      01111


Q ss_pred             ecccceEEeecCCCCCee--eeEe-----ecCCcceE---EEEEEcCCCEEEEEEec---------CCceEEEEeCCCCc
Q psy950          237 STRTEIRALHLDPTLTAV--PFKT-----VSNLTNVV---GVEFDYADDKILFTQIR---------PWAKIAWIPTTNPS  297 (407)
Q Consensus       237 s~~~~I~~i~l~~~~~~~--~~~~-----~~~~~~~~---ald~d~~~~~lywsd~~---------~~~~I~~~~~~~~~  297 (407)
                      +....+.-+.+.......  ++..     +.....+.   .+.+++.++++|+++..         . +.|..+++.+..
T Consensus       283 s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s-~~VsVID~~T~k  361 (426)
T 3c75_H          283 TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAAS-RFVVVLNAETGE  361 (426)
T ss_dssp             BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCE-EEEEEEETTTCC
T ss_pred             eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCC-CEEEEEECCCCe
Confidence            111222222221110000  0000     00001111   25788999999999752         2 579999998876


Q ss_pred             ccc--cCCCCccEEEEeccCC-eEEEEeCCCCCeEEEEECCCCcccc--cCC-CceeEEEEcC
Q psy950          298 SAS--SNLTNVVGVEFDYADD-KILFTQIRPWAKIAWIPTTNPSSAS--SNL-TNVVGVEFDY  354 (407)
Q Consensus       298 ~~~--~~~~~~~glAvDwi~~-~LYwtd~~~~~~I~v~~~~~~~rl~--~~l-~~P~~iavdp  354 (407)
                      ++.  .++..|.+|+|++-++ .||.++... ++|.|+++.....+.  ..+ ..|. +++.|
T Consensus       362 vv~~I~vg~~P~gia~spDg~~~lyv~n~~s-~~VsVID~~t~kvv~tI~~vG~~P~-~i~~~  422 (426)
T 3c75_H          362 RINKIELGHEIDSINVSQDAEPLLYALSAGT-QTLHIYDAATGEELRSVDQLGRGPQ-IITTH  422 (426)
T ss_dssp             EEEEEEEEEEECEEEECCSSSCEEEEEETTT-TEEEEEETTTCCEEEEECCCSSSCC-EEECC
T ss_pred             EEEEEECCCCcCeEEEccCCCEEEEEEcCCC-CeEEEEECCCCCEEEEecCCCCCCc-EEEcC
Confidence            655  5554799999999999 999999887 899999998775432  233 4454 55544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.81  E-value=5.1e-06  Score=81.31  Aligned_cols=291  Identities=8%  Similarity=-0.003  Sum_probs=163.7

Q ss_pred             EEEeCCCCEEEEEEcC----CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC---------CCCeEEEE
Q psy950           38 SPFSPLPRLLYWIDYG----QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA---------KLDLIQKI  104 (407)
Q Consensus        38 iavdp~~g~lywtd~~----~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~---------~~~~I~~~  104 (407)
                      .+-.|..+++|.+|++    . ..|...+.+-.....-+..+. .|. |++++.+++||+++.         ..+.|..+
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~-~~V~ViD~~t~~v~~~I~vG~-~P~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAV-TQQFVIDGEAGRVIGMIDGGF-LPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSS-EEEEEEETTTTEEEEEEEECS-SCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCC-CEEEEEECCCCeEEEEEECCC-CCc-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence            4456889999999986    3 377777766443333334343 585 999999999999984         35679999


Q ss_pred             ecCCCeE-EEEc-c------CCCCceEEEEeC--CEEEEEeCC-CCeEEEEecCCCCCCcccEEcccCCCCceeeEEeee
Q psy950          105 SYNGGNR-QIIR-R------NLPNPMGIAVHK--SDVYWVDRN-LRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDI  173 (407)
Q Consensus       105 ~~dG~~~-~~~~-~------~~~~P~~lav~~--~~lYwtd~~-~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~  173 (407)
                      |...... ..+. .      ...+|+++++..  .+||.++.. .+.|..++..+ +  +....+.  +...  ..++..
T Consensus       115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t-~--~vv~tI~--v~g~--~~~~P~  187 (386)
T 3sjl_D          115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG-K--AFKRMLD--VPDC--YHIFPT  187 (386)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT-T--EEEEEEE--CCSE--EEEEEE
T ss_pred             ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC-C--cEEEEEE--CCCc--ceeecC
Confidence            9876554 3332 2      145899999965  789999874 67888898775 1  2222221  1111  111111


Q ss_pred             cCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc------ccce-eeeeecccceEEee
Q psy950          174 VNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT------TMDE-YLVFSTRTEIRALH  246 (407)
Q Consensus       174 ~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~------~~~~-~Ll~s~~~~I~~i~  246 (407)
                      ...+  ..--|..   |  +.+.+.....     +.-.=.-...+  ..+...+.      .++. +++.+....+.-+.
T Consensus       188 g~~~--~~~~~~D---G--~~~~v~~~~~-----g~v~~~~~~~~--~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d  253 (386)
T 3sjl_D          188 APDT--FFMHCRD---G--SLAKVAFGTE-----GTPEITHTEVF--HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID  253 (386)
T ss_dssp             ETTE--EEEEETT---S--CEEEEECCSS-----SCCEEEECCCC--SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred             CCce--eEEECCC---C--CEEEEECCCC-----CeEEEeeccee--ccccccccccceeEcCCCcEEEEeCCCEEEEEE
Confidence            1000  0001110   0  1111111100     00000000111  11111111      0122 33444445566565


Q ss_pred             cCCCCCeeeeEeec--------CC---cceEEEEEEcCCCEEEEEEec---------CCceEEEEeCCCCcccc--cCCC
Q psy950          247 LDPTLTAVPFKTVS--------NL---TNVVGVEFDYADDKILFTQIR---------PWAKIAWIPTTNPSSAS--SNLT  304 (407)
Q Consensus       247 l~~~~~~~~~~~~~--------~~---~~~~ald~d~~~~~lywsd~~---------~~~~I~~~~~~~~~~~~--~~~~  304 (407)
                      +...... +..++.        ..   .....+.+++..+++|++...         . ++|..+++.+..++.  .++.
T Consensus       254 ~~~~~~~-v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~-~~V~viD~~t~kv~~~i~vg~  331 (386)
T 3sjl_D          254 LSSGDAK-FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS-RFVVVLDAKTGERLAKFEMGH  331 (386)
T ss_dssp             CTTSSCE-ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE-EEEEEEETTTCCEEEEEEEEE
T ss_pred             CCCCcce-eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCC-CEEEEEECCCCeEEEEEECCC
Confidence            5433211 111111        00   011135668999999998642         2 579999998876655  5555


Q ss_pred             CccEEEEeccCC-eEEEEeCCCCCeEEEEECCCCccc--ccCCCceeEEEEcCC
Q psy950          305 NVVGVEFDYADD-KILFTQIRPWAKIAWIPTTNPSSA--SSNLTNVVGVEFDYA  355 (407)
Q Consensus       305 ~~~glAvDwi~~-~LYwtd~~~~~~I~v~~~~~~~rl--~~~l~~P~~iavdp~  355 (407)
                      .+.+|+|+.-.+ .||-++... +.|.+++......+  .....+|..|++-+-
T Consensus       332 ~~~~lavs~D~~~~ly~tn~~~-~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          332 EIDSINVSQDEKPLLYALSTGD-KTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EECEEEECSSSSCEEEEEETTT-TEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             CcceEEECCCCCeEEEEEcCCC-CeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence            789999999997 678889888 89999998766543  345578888877654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.81  E-value=2.6e-05  Score=74.50  Aligned_cols=249  Identities=11%  Similarity=0.032  Sum_probs=143.0

Q ss_pred             CCCCcceEEEeCCCCEEEEEEcC--CCCeEEEEeCCCC--CeEEEE--eCCCCCceeEEEeCCCCeEEEEeCCCCeEEEE
Q psy950           31 FRSANTTSPFSPLPRLLYWIDYG--QYPRIGKSYLDGS--KWTSIV--SNGISMPRDLTIDMQTHDVYWVDAKLDLIQKI  104 (407)
Q Consensus        31 ~~~~P~~iavdp~~g~lywtd~~--~~~~I~r~~~dG~--~~~~l~--~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~  104 (407)
                      ....|..++++|...+||.++..  ....|....++..  ..+.+.  ......|..+++  .++.||.++...+.|...
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            56789999999999999999874  2246765555543  222222  223457999999  578899999888999998


Q ss_pred             ecCCCeE-----EEEc----------cCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCC-c--c-cEEcccCCC
Q psy950          105 SYNGGNR-----QIIR----------RNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNI-T--L-PTPIRTGLS  163 (407)
Q Consensus       105 ~~dG~~~-----~~~~----------~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~-~--~-~~~i~~~~~  163 (407)
                      +++....     ..+.          +...+|.++++.+  .+||.++...+.|...+... ... .  . .....    
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~-~~~~~~~~~l~~~~----  200 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINP-NANADNKEKFLTKG----  200 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECT-TCCTTTCCCCEEEE----
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcC-CCCcccccceeecc----
Confidence            8863211     1111          1234668899976  57999998888776665543 110 0  0 10000    


Q ss_pred             CceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccc
Q psy950          164 GLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTE  241 (407)
Q Consensus       164 ~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~  241 (407)
                         .....   ..+. ..         +-.++++                       .+|++       +|+++.  ...
T Consensus       201 ---~~~~~---~~~~-~~---------~~~~~~~-----------------------spdg~-------~l~v~~~~~~~  234 (361)
T 3scy_A          201 ---TPEAF---KVAP-GS---------GPRHLIF-----------------------NSDGK-------FAYLINEIGGT  234 (361)
T ss_dssp             ---EEEEE---ECCT-TC---------CEEEEEE-----------------------CTTSS-------EEEEEETTTCE
T ss_pred             ---cccce---ecCC-CC---------CCeEEEE-----------------------cCCCC-------EEEEEcCCCCe
Confidence               00000   0000 00         0011111                       22222       122221  123


Q ss_pred             eEEeecCCCCCeeeeEee----cCCcceEEEEEEcCCCEEEEEEec-CCceEEEEeCC--CCcc-cc---cCCCCccEEE
Q psy950          242 IRALHLDPTLTAVPFKTV----SNLTNVVGVEFDYADDKILFTQIR-PWAKIAWIPTT--NPSS-AS---SNLTNVVGVE  310 (407)
Q Consensus       242 I~~i~l~~~~~~~~~~~~----~~~~~~~ald~d~~~~~lywsd~~-~~~~I~~~~~~--~~~~-~~---~~~~~~~glA  310 (407)
                      |..+.+...... .+..+    .....+.++.+++.+++||.++.. . +.|....++  +... ..   ..+..|.+|+
T Consensus       235 v~v~~~~~g~~~-~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~-~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~  312 (361)
T 3scy_A          235 VIAFRYADGMLD-EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA-DGVAIFKVDETNGTLTKVGYQLTGIHPRNFI  312 (361)
T ss_dssp             EEEEEEETTEEE-EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS-CEEEEEEECTTTCCEEEEEEEECSSCCCEEE
T ss_pred             EEEEEecCCceE-EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC-CEEEEEEEcCCCCcEEEeeEecCCCCCceEE
Confidence            333333221110 01111    112346789999999999999987 6 667776664  2221 11   2244899999


Q ss_pred             EeccCCeEEEEeCCCCCeEEEEECC
Q psy950          311 FDYADDKILFTQIRPWAKIAWIPTT  335 (407)
Q Consensus       311 vDwi~~~LYwtd~~~~~~I~v~~~~  335 (407)
                      +++-++.||.++... +.|.+...+
T Consensus       313 ~spdg~~l~~~~~~~-~~v~v~~~d  336 (361)
T 3scy_A          313 ITPNGKYLLVACRDT-NVIQIFERD  336 (361)
T ss_dssp             ECTTSCEEEEEETTT-TEEEEEEEC
T ss_pred             ECCCCCEEEEEECCC-CCEEEEEEE
Confidence            999999999999887 788886554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.80  E-value=1.2e-07  Score=91.17  Aligned_cols=83  Identities=13%  Similarity=0.117  Sum_probs=62.1

Q ss_pred             CCCCcceEEEeCCCCEEEEEEcCC----CCeEEEEeCCCCC-eEEEEe-CC----CCCceeEEEeCCCCeEEEEeC---C
Q psy950           31 FRSANTTSPFSPLPRLLYWIDYGQ----YPRIGKSYLDGSK-WTSIVS-NG----ISMPRDLTIDMQTHDVYWVDA---K   97 (407)
Q Consensus        31 ~~~~P~~iavdp~~g~lywtd~~~----~~~I~r~~~dG~~-~~~l~~-~~----~~~P~glaiD~~~~~lYw~d~---~   97 (407)
                      .+..|.+|++|+. |.|||+|.+.    .++|.+.+++... ...+.- ..    ...|++|++|+.++++|++|.   .
T Consensus        65 ~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           65 TFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             ceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            3678999999998 8899999862    3599999987333 333321 11    135799999998899999999   7


Q ss_pred             CCeEEEEecCC-CeEEEE
Q psy950           98 LDLIQKISYNG-GNRQII  114 (407)
Q Consensus        98 ~~~I~~~~~dG-~~~~~~  114 (407)
                      .+.|.+.+++. ...+++
T Consensus       144 ~~~i~v~d~~~g~~~r~~  161 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVL  161 (343)
T ss_dssp             GCEEEEEETTTCCEEEEC
T ss_pred             CCeEEEEECCCCCEEEEe
Confidence            88999999874 433443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.80  E-value=5.6e-06  Score=79.87  Aligned_cols=256  Identities=14%  Similarity=0.079  Sum_probs=153.1

Q ss_pred             ceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEe------CCCCCceeEEEeCC---CCeEEEE
Q psy950           24 KKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVS------NGISMPRDLTIDMQ---THDVYWV   94 (407)
Q Consensus        24 ~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~------~~~~~P~glaiD~~---~~~lYw~   94 (407)
                      ...++..++..|++||++|. |.||.++... .+|.+...++...+.+..      .+..-|.|||+++.   ++.||++
T Consensus        23 ~~~~va~gL~~P~~ia~~pd-G~llVter~~-G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~  100 (347)
T 3das_A           23 VLRTVATGLNSPWGLAPLPG-GDLLVSSRDE-ATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY  100 (347)
T ss_dssp             EEEEEECCCSSEEEEEECTT-SCEEEEETTT-CEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred             eeEEeecCCCCceEEEEcCC-CcEEEEEecC-CEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence            34467789999999999997 7799999744 489999876444443321      24557999999994   7899987


Q ss_pred             eC--CCCeEEEEecCCC--------eEEEEcc-----CCCCceEEEEeC-CEEEEEeC-------------CCCeEEEEe
Q psy950           95 DA--KLDLIQKISYNGG--------NRQIIRR-----NLPNPMGIAVHK-SDVYWVDR-------------NLRTVYKAS  145 (407)
Q Consensus        95 d~--~~~~I~~~~~dG~--------~~~~~~~-----~~~~P~~lav~~-~~lYwtd~-------------~~~~I~~~~  145 (407)
                      ..  ..++|.+..+++.        ..+++..     .......|++.. ++||++..             ..++|.|++
T Consensus       101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~  180 (347)
T 3das_A          101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMT  180 (347)
T ss_dssp             EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred             EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence            53  5678999998872        2344331     233456688876 79999942             246899999


Q ss_pred             cCCC---CCCc-ccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCcccc
Q psy950          146 KLAS---TNIT-LPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSA  221 (407)
Q Consensus       146 ~~~~---g~~~-~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~  221 (407)
                      .+++   ++.. ..+++..++..|.++.+.. .     +.-.+......+-..+....++.      .|      ||-. 
T Consensus       181 ~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp-~-----G~L~~~d~g~~~~deln~i~~G~------ny------GwP~-  241 (347)
T 3das_A          181 PDGEPAPGNPFPGSPVYSYGHRNVQGLAWDD-K-----QRLFASEFGQDTWDELNAIKPGD------NY------GWPE-  241 (347)
T ss_dssp             TTSSBCTTCSSTTCCEEEBCCSBCCEEEECT-T-----CCEEEEECCSSSCEEEEEECTTC------BC------CTTT-
T ss_pred             CCCCccCCCCCCCCeEEeeCCCCcceEEECC-C-----CCEEEEecCCCCCceeeEEcCCC------Ee------cCCc-
Confidence            8862   0000 2456777778888887642 1     11111110001112233333332      11      2211 


Q ss_pred             CCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecC-CcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCccc-
Q psy950          222 SDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSN-LTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA-  299 (407)
Q Consensus       222 ~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~-~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~-  299 (407)
                           |....                .......|+..... ...+.++.|.  ++.+|...... .+|.++.+++.... 
T Consensus       242 -----~~g~~----------------~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~~~l~~-~~l~~v~~~~~~~~~  297 (347)
T 3das_A          242 -----AEGKG----------------GGSGFHDPVAQWSTDEASPSGIAYA--EGSVWMAGLRG-ERLWRIPLKGTAAAA  297 (347)
T ss_dssp             -----CCSSC----------------CCTTCCCCSEEECTTTCCEEEEEEE--TTEEEEEESTT-CSEEEEEEETTEESS
T ss_pred             -----ccCCC----------------CCccccCCcEecCCCCCCCcceEEE--cCceeeccccC-CEEEEEEecCCceec
Confidence                 11000                00011222222211 1346677776  68999998888 78999888764321 


Q ss_pred             --c----cCCCCccEEEEeccCCeEEEEeCCC
Q psy950          300 --S----SNLTNVVGVEFDYADDKILFTQIRP  325 (407)
Q Consensus       300 --~----~~~~~~~glAvDwi~~~LYwtd~~~  325 (407)
                        .    +...+|.+|++++- +.||+++...
T Consensus       298 ~~e~~l~~~~gR~~dv~~~pD-G~lyv~td~~  328 (347)
T 3das_A          298 DPQAFLEGEYGRLRTVAPAGG-DKLWLVTSNT  328 (347)
T ss_dssp             CCEEESTTTSSCEEEEEEEET-TEEEEEECTT
T ss_pred             ceEEeecCCCCCccEEEECCC-CcEEEEEcCC
Confidence              1    33238999999985 5888885543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.77  E-value=5.5e-06  Score=76.46  Aligned_cols=202  Identities=14%  Similarity=0.143  Sum_probs=128.1

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR  111 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~  111 (407)
                      ..++.|||+||..+.||-.... .++|.+.+.+|.-...+.-.+...++|||++. ++++|.++...+++....++....
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~-~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~  103 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINK-PAAIVEMTTNGDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSE  103 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEET-TEEEEEEETTCCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCC
T ss_pred             ccCcceeEEeCCCCEEEEEECC-CCeEEEEeCCCCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCe
Confidence            4679999999999999986655 46999999998766666545667999999996 567888888889988887654331


Q ss_pred             -E---EEccC-CCCc-----eEEEEeC--CEEEEEeCCCC-eEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCC
Q psy950          112 -Q---IIRRN-LPNP-----MGIAVHK--SDVYWVDRNLR-TVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPP  178 (407)
Q Consensus       112 -~---~~~~~-~~~P-----~~lav~~--~~lYwtd~~~~-~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~  178 (407)
                       .   ..... ...|     .|||+++  ++||.+.-... .|++.+...  .  .           ..+++...   | 
T Consensus       104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~--~--~-----------~~l~i~~~---~-  164 (255)
T 3qqz_A          104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLL--S--S-----------NELHISKD---K-  164 (255)
T ss_dssp             EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTT--C--S-----------SCCEEEEC---H-
T ss_pred             eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccc--c--C-----------Cceeeecc---h-
Confidence             1   11111 1234     7899886  46666543322 333333100  0  0           00111000   0 


Q ss_pred             CCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEe
Q psy950          179 DENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKT  258 (407)
Q Consensus       179 ~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~  258 (407)
                                                    .                                     +...        
T Consensus       165 ------------------------------~-------------------------------------~~~~--------  169 (255)
T 3qqz_A          165 ------------------------------A-------------------------------------LQRQ--------  169 (255)
T ss_dssp             ------------------------------H-------------------------------------HHHT--------
T ss_pred             ------------------------------h-------------------------------------hccc--------
Confidence                                          0                                     0000        


Q ss_pred             ecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc------------cCCCCccEEEEeccCCeEEEEeCCCC
Q psy950          259 VSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS------------SNLTNVVGVEFDYADDKILFTQIRPW  326 (407)
Q Consensus       259 ~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~------------~~~~~~~glAvDwi~~~LYwtd~~~~  326 (407)
                       ..+..+.+++||+..+++|...... ..+..++.+|.....            .+. .|||||+|.- ++||.++..+ 
T Consensus       170 -~~~~d~S~l~~dp~tg~lliLS~~s-~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~-qpEGia~d~~-G~lyIvsE~n-  244 (255)
T 3qqz_A          170 -FTLDDVSGAEFNQQKNTLLVLSHES-RALQEVTLVGEVIGEMSLTKGSRGLSHNIK-QAEGVAMDAS-GNIYIVSEPN-  244 (255)
T ss_dssp             -CCSSCCCEEEEETTTTEEEEEETTT-TEEEEECTTCCEEEEEECSTTGGGCSSCCC-SEEEEEECTT-CCEEEEETTT-
T ss_pred             -cccCCceeEEEcCCCCeEEEEECCC-CeEEEEcCCCCEEEEEEcCCccCCcccccC-CCCeeEECCC-CCEEEEcCCc-
Confidence             0012346788999999999988777 777777777653221            133 8999999995 5799997665 


Q ss_pred             CeEEEEECC
Q psy950          327 AKIAWIPTT  335 (407)
Q Consensus       327 ~~I~v~~~~  335 (407)
                       .++++...
T Consensus       245 -~~y~f~~~  252 (255)
T 3qqz_A          245 -RFYRFTPQ  252 (255)
T ss_dssp             -EEEEEEC-
T ss_pred             -eEEEEEec
Confidence             78888654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.77  E-value=1.1e-06  Score=87.30  Aligned_cols=265  Identities=10%  Similarity=0.058  Sum_probs=151.1

Q ss_pred             CCCCEEEEEEcCC-C--CeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC---------CCCeEEEEecCCC
Q psy950           42 PLPRLLYWIDYGQ-Y--PRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA---------KLDLIQKISYNGG  109 (407)
Q Consensus        42 p~~g~lywtd~~~-~--~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~---------~~~~I~~~~~dG~  109 (407)
                      |...++|.++.+. .  ..|...+.+-....--+..+. .| +|++++.+++||+++.         ..+.|..+|....
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            4557899999863 1  378888776544433344343 79 9999999999999995         3568999988655


Q ss_pred             eE-EEEc-c------CCCCceEEEEeC--CEEEEEeCC-CCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCC
Q psy950          110 NR-QIIR-R------NLPNPMGIAVHK--SDVYWVDRN-LRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPP  178 (407)
Q Consensus       110 ~~-~~~~-~------~~~~P~~lav~~--~~lYwtd~~-~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~  178 (407)
                      .. ..+. .      ....|.++++..  .+||.++.. .+.|..++...      .+++.. +.-              
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t------~kvv~~-I~v--------------  218 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG------KTFDRM-LDV--------------  218 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT------TEEEEE-EEC--------------
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC------CeEEEE-EEc--------------
Confidence            44 3332 2      146799999965  799999875 67898888775      222220 000              


Q ss_pred             CCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec-ccceEEe-e--cCCCCCee
Q psy950          179 DENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST-RTEIRAL-H--LDPTLTAV  254 (407)
Q Consensus       179 ~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~-~~~I~~i-~--l~~~~~~~  254 (407)
                                 ++|.+   ..|.+    ...|.-.|+.|..              +++.. ...+... .  ++...  .
T Consensus       219 -----------~g~~~---~~p~g----~~~~v~~~~dG~~--------------~~V~~~~~~v~~~~~~~~~v~~--~  264 (426)
T 3c75_H          219 -----------PDCYH---IFPAS----PTVFYMNCRDGSL--------------ARVDFADGETKVTNTEVFHTED--E  264 (426)
T ss_dssp             -----------CSEEE---EEEEE----TTEEEEEETTSSE--------------EEEECCTTCCEEEECCCCSCTT--S
T ss_pred             -----------CCcee---eccCC----CcEEEEEcCCCCE--------------EEEECCCCcEEEEeeeeeccCC--C
Confidence                       11210   01100    0124445554432              11111 0111100 0  00000  0


Q ss_pred             eeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc------------cCCCCccE---EEEeccCCeEE
Q psy950          255 PFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS------------SNLTNVVG---VEFDYADDKIL  319 (407)
Q Consensus       255 ~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~------------~~~~~~~g---lAvDwi~~~LY  319 (407)
                      +   +     ...+.|....+++|++.. . ++++.+++.+.....            ..+..|.|   ++++.-++.||
T Consensus       265 p---~-----~~~~~~~~dg~~~~~~s~-~-g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly  334 (426)
T 3c75_H          265 L---L-----INHPAFSLRSGRLVWPTY-T-GKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY  334 (426)
T ss_dssp             C---B-----CSCCEECTTTCEEEEEBT-T-SEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred             c---e-----eeEeeecCCCCEEEEEeC-C-CcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence            0   0     011344555566665543 3 456666654332110            11113444   99999999999


Q ss_pred             EEeCC---------CCCeEEEEECCCCccccc-CC-CceeEEEEcCCCC-eEEEEeCCCCCcccccCC
Q psy950          320 FTQIR---------PWAKIAWIPTTNPSSASS-NL-TNVVGVEFDYADD-KILFTQIRPWAKIAWIPT  375 (407)
Q Consensus       320 wtd~~---------~~~~I~v~~~~~~~rl~~-~l-~~P~~iavdp~~g-~lywtd~~~~~~ia~~dg  375 (407)
                      .++..         . ++|.|+++.....+.+ .+ ..|.+|+++|-.. +||-++|++. .+.-+|-
T Consensus       335 Va~~~~~~gthk~~s-~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~-~VsVID~  400 (426)
T 3c75_H          335 LLVDQRDEWKHKAAS-RFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQ-TLHIYDA  400 (426)
T ss_dssp             EEEEECCTTCTTSCE-EEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTT-EEEEEET
T ss_pred             EEecccccccccCCC-CEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCC-eEEEEEC
Confidence            99752         2 5799999988765332 22 4699999999988 8998888542 3444443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.76  E-value=1e-06  Score=85.35  Aligned_cols=260  Identities=8%  Similarity=0.035  Sum_probs=142.8

Q ss_pred             CCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc-------cCCCCceEEEEe-----CCEEE
Q psy950           65 GSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR-------RNLPNPMGIAVH-----KSDVY  132 (407)
Q Consensus        65 G~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-------~~~~~P~~lav~-----~~~lY  132 (407)
                      |-..+++.+ ++..|.+|++++.+++||+++. .++|.+++.+|...+.+.       .....|.+|+++     +++||
T Consensus         7 g~~~~~va~-~l~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lY   84 (353)
T 2g8s_A            7 TVNVEVLQD-KLDHPWALAFLPDNHGMLITLR-GGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIW   84 (353)
T ss_dssp             CSEEEEEEE-EESSEEEEEECSTTCCEEEEET-TTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEE
T ss_pred             CcEEEEEEC-CCCCcEEEEEcCCCCEEEEEeC-CceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEE
Confidence            333444444 6889999999996544999997 489999988775432221       234568999998     58999


Q ss_pred             EEeCC-------CCeEEEEecCCCC-CCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCC
Q psy950          133 WVDRN-------LRTVYKASKLAST-NITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFP  204 (407)
Q Consensus       133 wtd~~-------~~~I~~~~~~~~g-~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~  204 (407)
                      +++..       ..+|.|......+ .....+++            +.  ..|. ... +    ++.-..|.+.      
T Consensus        85 v~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i------------~~--~~p~-~~~-~----~h~~~~l~~~------  138 (353)
T 2g8s_A           85 LSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTV------------FR--QMPK-LST-G----NHFGGRLVFD------  138 (353)
T ss_dssp             EEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEE------------EE--CSSC-CBS-S----SCCCCCEEEC------
T ss_pred             EEEeCCCCCCCceeEEEEEEECCCCCCCCceEEE------------EE--ECCC-CCC-C----cccCccEEEC------
Confidence            99754       3467777655310 00111111            11  1111 000 0    0000112211      


Q ss_pred             CCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCC-Ce---------eeeEeecCCcceEEEEEEcCC
Q psy950          205 QNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTL-TA---------VPFKTVSNLTNVVGVEFDYAD  274 (407)
Q Consensus       205 ~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~-~~---------~~~~~~~~~~~~~ald~d~~~  274 (407)
                                |.|+..-..+..|..+...-+-.....|.++..+... ..         .+.....+++++.++++|+..
T Consensus       139 ----------pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~  208 (353)
T 2g8s_A          139 ----------GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWS  208 (353)
T ss_dssp             ----------SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTT
T ss_pred             ----------CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCC
Confidence                      1111110001001000000000112367777765431 00         111223467899999999989


Q ss_pred             CEEEEEEecC--CceEEEEeCCCC--------------------------ccc-c----cCCCCccEEEEec------cC
Q psy950          275 DKILFTQIRP--WAKIAWIPTTNP--------------------------SSA-S----SNLTNVVGVEFDY------AD  315 (407)
Q Consensus       275 ~~lywsd~~~--~~~I~~~~~~~~--------------------------~~~-~----~~~~~~~glAvDw------i~  315 (407)
                      +.||.+|...  ...|.++.-.+.                          ... +    .-...|.||++.-      ..
T Consensus       209 g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~  288 (353)
T 2g8s_A          209 NALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQ  288 (353)
T ss_dssp             TEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGT
T ss_pred             CCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccC
Confidence            9999999864  134544322110                          000 0    1112688999963      24


Q ss_pred             CeEEEEeCCCCCeEEEEECCCCc-----ccccC-CCceeEEEEcCCCCeEEEEeC
Q psy950          316 DKILFTQIRPWAKIAWIPTTNPS-----SASSN-LTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       316 ~~LYwtd~~~~~~I~v~~~~~~~-----rl~~~-l~~P~~iavdp~~g~lywtd~  364 (407)
                      +++|+++... ++|.++++++..     ++.+. ..+|++|+++|. |.||.++.
T Consensus       289 g~l~v~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd-G~lyv~td  341 (353)
T 2g8s_A          289 QKLFIGALKD-KDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD-GYLYVLTD  341 (353)
T ss_dssp             TEEEEEETTT-TEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT-SCEEEEEC
T ss_pred             CcEEEEEccC-CEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC-CcEEEEEe
Confidence            7899999998 899999987643     13333 469999999995 77999743

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.75  E-value=2.9e-05  Score=79.52  Aligned_cols=299  Identities=11%  Similarity=0.024  Sum_probs=178.3

Q ss_pred             cceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEE--EeCCCCCceeEEEeC----CCCeEEEEeCCCCeEEEEecCC
Q psy950           35 NTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSI--VSNGISMPRDLTIDM----QTHDVYWVDAKLDLIQKISYNG  108 (407)
Q Consensus        35 P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l--~~~~~~~P~glaiD~----~~~~lYw~d~~~~~I~~~~~dG  108 (407)
                      |.+++++|..++||.++.+  ..|...+++....+.+  +.. -..|.++++++    .+++||.++...++|..++...
T Consensus       181 ~~~v~~spdg~~l~v~~~d--~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t  257 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRD--ARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  257 (543)
T ss_dssp             EEEEEECTTSCEEEEEETT--SEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             cceEEECCCCCEEEEECCC--CeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence            8999999999999999887  4899999952222222  222 34799999999    9999999998889999988754


Q ss_pred             CeE-EEEcc-C----------CCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeec
Q psy950          109 GNR-QIIRR-N----------LPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIV  174 (407)
Q Consensus       109 ~~~-~~~~~-~----------~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~  174 (407)
                      ... +++.. .          ...+.+|++..  ..+|.+....+.|..++... .  ....           ++.....
T Consensus       258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~-~--~~l~-----------~~~i~~~  323 (543)
T 1nir_A          258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD-I--DNLT-----------VTSIGAA  323 (543)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT-S--SSCE-----------EEEEECC
T ss_pred             cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC-C--Ccce-----------eEEeccC
Confidence            433 33321 1          12456777754  68888888888888888664 1  1111           0000000


Q ss_pred             CCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCC
Q psy950          175 NQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLT  252 (407)
Q Consensus       175 ~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~  252 (407)
                      ..                                      +.+..+.+|++       +++.+.  ...|.-+.+.....
T Consensus       324 ~~--------------------------------------~~~~~~spdg~-------~l~va~~~~~~v~v~D~~tg~l  358 (543)
T 1nir_A          324 PF--------------------------------------LHDGGWDSSHR-------YFMTAANNSNKVAVIDSKDRRL  358 (543)
T ss_dssp             SS--------------------------------------CCCEEECTTSC-------EEEEEEGGGTEEEEEETTTTEE
T ss_pred             cC--------------------------------------ccCceECCCCC-------EEEEEecCCCeEEEEECCCCeE
Confidence            00                                      01111233443       222222  22344444333211


Q ss_pred             eeeeEeecCC---cceEEEEEEcCCCEEEEEEe-cCCceEEEEeCCCC-------cccc---cCCCCccEEEEeccCCeE
Q psy950          253 AVPFKTVSNL---TNVVGVEFDYADDKILFTQI-RPWAKIAWIPTTNP-------SSAS---SNLTNVVGVEFDYADDKI  318 (407)
Q Consensus       253 ~~~~~~~~~~---~~~~ald~d~~~~~lywsd~-~~~~~I~~~~~~~~-------~~~~---~~~~~~~glAvDwi~~~L  318 (407)
                      . ...++...   .....+ +++..+.+|.+.. .. ++|..++.+..       ..+.   ..+..+..|++.+-+++|
T Consensus       359 ~-~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d-~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l  435 (543)
T 1nir_A          359 S-ALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGD-GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL  435 (543)
T ss_dssp             E-EEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSS-SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEE
T ss_pred             E-EeeccCCCCCCCCCccc-CCCCCccEEEeccCCC-ceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcE
Confidence            1 11111111   112222 4677788888775 45 78999988762       2211   233367889999999999


Q ss_pred             EEEeCC------CCCeEEEEECCCCccc------------ccCCCceeEEEEcCCCCeEEEEeCC---CCCcccccCCCC
Q psy950          319 LFTQIR------PWAKIAWIPTTNPSSA------------SSNLTNVVGVEFDYADDKILFTQIR---PWAKIAWIPTTN  377 (407)
Q Consensus       319 Ywtd~~------~~~~I~v~~~~~~~rl------------~~~l~~P~~iavdp~~g~lywtd~~---~~~~ia~~dg~~  377 (407)
                      |.....      . ++|.+++.+...++            .+.-.++..+++.|...+||.+.|.   ....|.-+|-..
T Consensus       436 ~v~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t  514 (543)
T 1nir_A          436 YVDTTFNPDARIS-QSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  514 (543)
T ss_dssp             EECCTTCSSHHHH-TCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             EEecCCCCCcccC-ceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence            987631      2 48999999865432            1235789999999999999999984   234452222111


Q ss_pred             CCCcceeEEE---eCCCccceeeccch
Q psy950          378 PSSASVNTIL---SRGKDEKAKIENEQ  401 (407)
Q Consensus       378 ~~~~~~~~l~---~~~~~~~~~~~~~~  401 (407)
                        +.-+++|.   ...+++|+-+.|++
T Consensus       515 --~~~~~~i~~~~~~~p~g~~~~~~~~  539 (543)
T 1nir_A          515 --LKLKAVVKDPRLITPTGKFNVYNTQ  539 (543)
T ss_dssp             --TEEEEEECCTTCCSEEEEEEHHHHH
T ss_pred             --ceEEEeecCCCccCCCeeeeccccc
Confidence              22333343   44556677777765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.75  E-value=2.8e-05  Score=75.17  Aligned_cols=264  Identities=9%  Similarity=0.023  Sum_probs=145.2

Q ss_pred             CCcceEEEeCCCCEEEEEEcC--------CCCeEEEEeCCCCCe-EEEEeC-----CCCCceeEEEeCCCCeEEEEeCC-
Q psy950           33 SANTTSPFSPLPRLLYWIDYG--------QYPRIGKSYLDGSKW-TSIVSN-----GISMPRDLTIDMQTHDVYWVDAK-   97 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~--------~~~~I~r~~~dG~~~-~~l~~~-----~~~~P~glaiD~~~~~lYw~d~~-   97 (407)
                      ..| +|+++|..++||.++..        ....|...+.+.... ..+-..     ....|.+|++++.+++||.++.. 
T Consensus        51 ~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~  129 (361)
T 2oiz_A           51 FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASP  129 (361)
T ss_dssp             EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESS
T ss_pred             CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCC
Confidence            458 99999999999999841        123588877763332 333211     12479999999999999999976 


Q ss_pred             CCeEEEEecCCCeEEEE-ccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeec
Q psy950           98 LDLIQKISYNGGNRQII-RRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIV  174 (407)
Q Consensus        98 ~~~I~~~~~dG~~~~~~-~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~  174 (407)
                      .+.|..++.+....... .. .....++.++.  ...|.+-...+++..+.....++  .......       ..+++..
T Consensus       130 ~~~v~v~d~~~~~~~~~~i~-~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~--~~~~~~~-------~~~~~~~  199 (361)
T 2oiz_A          130 ATSIGIVDVAKGDYVEDVTA-AAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK--VASQSRS-------KQMFSVK  199 (361)
T ss_dssp             SEEEEEEETTTTEEEEEEGG-GTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS--EEEEEEC-------CCCSCTT
T ss_pred             CCeEEEEECCCCcEEEEEec-CCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc--Eeeeccc-------cceEcCC
Confidence            68999999976544221 21 12223344443  24444444444444444332111  0000000       0011111


Q ss_pred             CCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCee
Q psy950          175 NQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAV  254 (407)
Q Consensus       175 ~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~  254 (407)
                            ..|... .                               ..+++.      .+++.+....+..+.+...... 
T Consensus       200 ------~~~~~~-~-------------------------------~~~~g~------~~~~~~~~~~v~v~d~~~~~~~-  234 (361)
T 2oiz_A          200 ------DDPIFI-A-------------------------------PALDKD------KAHFVSYYGNVYSADFSGDEVK-  234 (361)
T ss_dssp             ------TSCBCS-C-------------------------------CEECSS------EEEEEBTTSEEEEEECSSSSCE-
T ss_pred             ------CCceEE-E-------------------------------ecccCC------EEEEEeCCCeEEEEEecCCCce-
Confidence                  111110 0                               001110      0111111122222322211100 


Q ss_pred             eeEee--------cCCcceE---EEEEEcCCCEEEEEEe-c---------CCceEEEEeCCCCcccc--cCCCCccEEEE
Q psy950          255 PFKTV--------SNLTNVV---GVEFDYADDKILFTQI-R---------PWAKIAWIPTTNPSSAS--SNLTNVVGVEF  311 (407)
Q Consensus       255 ~~~~~--------~~~~~~~---ald~d~~~~~lywsd~-~---------~~~~I~~~~~~~~~~~~--~~~~~~~glAv  311 (407)
                      ...+.        .....+.   .+.+++.++++|.+.. .         . ..|..+++.+...+.  .++. |.+||+
T Consensus       235 ~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~-~~v~viD~~t~~~v~~i~~~~-p~~ia~  312 (361)
T 2oiz_A          235 VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPA-AEIWVMDTKTKQRVARIPGRD-ALSMTI  312 (361)
T ss_dssp             EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCC-SEEEEEETTTTEEEEEEECTT-CCEEEE
T ss_pred             ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCC-ceEEEEECCCCcEEEEEecCC-eeEEEE
Confidence            00000        0000111   2678888999999865 1         2 478999988766554  5564 999999


Q ss_pred             eccCCeEEEEeCCCCCeEEEEECCCC--ccc---ccCCCceeEEEEcCCCC
Q psy950          312 DYADDKILFTQIRPWAKIAWIPTTNP--SSA---SSNLTNVVGVEFDYADD  357 (407)
Q Consensus       312 Dwi~~~LYwtd~~~~~~I~v~~~~~~--~rl---~~~l~~P~~iavdp~~g  357 (407)
                      ++-++.||-++.   ++|.+++....  ..+   ..--..|++|+++|..+
T Consensus       313 spdg~~l~v~n~---~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          313 DQQRNLMLTLDG---GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ETTTTEEEEECS---SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CCCCCEEEEeCC---CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            999999999886   47999998876  543   23348999999999654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.73  E-value=4.3e-05  Score=71.39  Aligned_cols=257  Identities=8%  Similarity=-0.071  Sum_probs=145.4

Q ss_pred             CcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCC-----CCceeEEEeCCCCeEEEEeC-----------C
Q psy950           34 ANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGI-----SMPRDLTIDMQTHDVYWVDA-----------K   97 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~-----~~P~glaiD~~~~~lYw~d~-----------~   97 (407)
                      .|.+++++|..+++|.++... ..|...++........+....     ..|.++++++.+++||+++.           .
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKS-ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTT-TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CccceEEcCCCCEEEEEeCCC-CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccccccc
Confidence            599999999988999998765 489999987554433333221     16899999999999999962           3


Q ss_pred             CCeEEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCC-CCceeeEEeeec
Q psy950           98 LDLIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGL-SGLRDIAIFDIV  174 (407)
Q Consensus        98 ~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~-~~p~~i~i~~~~  174 (407)
                      .+.|...++++............|.++++..  .+||.+   ++.|...+..+ +  .....+.... ..|.        
T Consensus       114 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~-~--~~~~~~~~~~~~~~~--------  179 (337)
T 1pby_B          114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL---GRDLHVMDPEA-G--TLVEDKPIQSWEAET--------  179 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE---SSSEEEEETTT-T--EEEEEECSTTTTTTT--------
T ss_pred             CceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe---CCeEEEEECCC-C--cEeeeeeccccCCCc--------
Confidence            5889999998765533333356788899865  568888   35677777664 2  1111111000 0000        


Q ss_pred             CCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCee
Q psy950          175 NQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAV  254 (407)
Q Consensus       175 ~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~  254 (407)
                               ... .++  ..+-+..... ......|...-.      .++.  ..+.     .....|..+.+...... 
T Consensus       180 ---------~~s-~dg--~~l~~~~~~~-~~~~~~~~~~~~------~~~~--~~~~-----~~~~~v~~~d~~~~~~~-  232 (337)
T 1pby_B          180 ---------YAQ-PDV--LAVWNQHESS-GVMATPFYTARK------DIDP--ADPT-----AYRTGLLTMDLETGEMA-  232 (337)
T ss_dssp             ---------BCC-CBC--CCCCCCCTTT-TEEEEEEEEEBT------TSCT--TSGG-----GEEEEEEEEETTTCCEE-
T ss_pred             ---------eeC-CCc--cEEeeeccCC-Cceeeeeecccc------cccc--cccc-----ccccceEEEeCCCCCce-
Confidence                     000 000  0000000000 000000000000      0000  0000     00012333444332211 


Q ss_pred             eeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeCCCCCeEEEE
Q psy950          255 PFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIRPWAKIAWI  332 (407)
Q Consensus       255 ~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~  332 (407)
                      ..........+.++.+++.++++|.+   . +.|..+++.+.....  ..+..|.++++++-++.||.+. .. +.|.+.
T Consensus       233 ~~~~~~~~~~~~~~~~s~dg~~l~~~---~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~-~~i~v~  306 (337)
T 1pby_B          233 MREVRIMDVFYFSTAVNPAKTRAFGA---Y-NVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG-AL-GDLAAY  306 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEE---E-SEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES-BS-SEEEEE
T ss_pred             EeecCCCCCceeeEEECCCCCEEEEe---C-CeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEc-CC-CcEEEE
Confidence            11111122456789999999999988   3 568888887655433  3344899999999999899884 45 689999


Q ss_pred             ECCCCc
Q psy950          333 PTTNPS  338 (407)
Q Consensus       333 ~~~~~~  338 (407)
                      ++....
T Consensus       307 d~~~~~  312 (337)
T 1pby_B          307 DAETLE  312 (337)
T ss_dssp             ETTTCC
T ss_pred             ECcCCc
Confidence            987654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.72  E-value=7.7e-05  Score=72.65  Aligned_cols=258  Identities=7%  Similarity=-0.043  Sum_probs=145.4

Q ss_pred             CcceEEEeCCCCEEEEEEcC--------CCCeEEEEeCCCCCeEEEEeCC-------CCCceeEEEeCCCCeEEEEeCC-
Q psy950           34 ANTTSPFSPLPRLLYWIDYG--------QYPRIGKSYLDGSKWTSIVSNG-------ISMPRDLTIDMQTHDVYWVDAK-   97 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~~--------~~~~I~r~~~dG~~~~~l~~~~-------~~~P~glaiD~~~~~lYw~d~~-   97 (407)
                      .| +|++.|..++||.++..        ....|...+........-+..+       ...|.++++++.+++||+++.. 
T Consensus        68 ~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~  146 (373)
T 2mad_H           68 LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC
Confidence            48 99999999999999842        1236778877633222222211       2469999999999999999875 


Q ss_pred             CCeEEEEecCCCeEEEEccCCCCceEEEE--eCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecC
Q psy950           98 LDLIQKISYNGGNRQIIRRNLPNPMGIAV--HKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVN  175 (407)
Q Consensus        98 ~~~I~~~~~dG~~~~~~~~~~~~P~~lav--~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~  175 (407)
                      .+.|..++ +.......  .+..|..+.+  .+...|++.+..+++..++. . ++  ........       .++ ...
T Consensus       147 ~~~v~viD-~t~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~-g~--~~~~~~~~-------~~~-~~~  211 (373)
T 2mad_H          147 GPAVGLVV-QGGSSDDQ--LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-A-GG--AAGAGLVG-------AML-TAA  211 (373)
T ss_pred             CCeEEEEE-CCCCEEeE--EcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-C-Cc--EEEEEecc-------ccc-cCC
Confidence            68899998 65543211  0233333444  34678888888887777776 4 22  11111000       000 000


Q ss_pred             CCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeee
Q psy950          176 QPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVP  255 (407)
Q Consensus       176 qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~  255 (407)
                      +|. ..++-.                                   ..++.      .+++.+....+..+.+...... .
T Consensus       212 ~p~-~~~~~~-----------------------------------~~~~~------~~~~~~~~~~v~vid~~~~~~~-v  248 (373)
T 2mad_H          212 QNL-LTQPAQ-----------------------------------ANKSG------RIVWPVYSGKILQADISAAGAT-N  248 (373)
T ss_pred             cce-eeccee-----------------------------------EecCC------EEEEEcCCceEEEEeccCCcce-E
Confidence            010 000000                                   00000      0111111122222222111000 0


Q ss_pred             eEee--------cC---CcceEEEEEEcCCCEEEEEEec---------CCceEEEEeCCCCcccc--cCCCCccEEEEec
Q psy950          256 FKTV--------SN---LTNVVGVEFDYADDKILFTQIR---------PWAKIAWIPTTNPSSAS--SNLTNVVGVEFDY  313 (407)
Q Consensus       256 ~~~~--------~~---~~~~~ald~d~~~~~lywsd~~---------~~~~I~~~~~~~~~~~~--~~~~~~~glAvDw  313 (407)
                      +..+        ..   ......+.+++.++++|.+...         . +.|..+++.+...+.  .++..|.+|++++
T Consensus       249 ~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~-~~V~VID~~t~~vv~~i~~g~~p~~i~~s~  327 (373)
T 2mad_H          249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAA-KEVTSVTGLVGQTSSQISLGHDVDAISVAQ  327 (373)
T ss_pred             eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCC-CeEEEEECCCCEEEEEEECCCCcCeEEECC
Confidence            0000        00   0112236678889999998642         2 579999988766544  5554799999999


Q ss_pred             cCC-eEEEEeCCCCCeEEEEECCCCccc---ccCCCceeEEEE
Q psy950          314 ADD-KILFTQIRPWAKIAWIPTTNPSSA---SSNLTNVVGVEF  352 (407)
Q Consensus       314 i~~-~LYwtd~~~~~~I~v~~~~~~~rl---~~~l~~P~~iav  352 (407)
                      -++ .+|-++... ++|.++++.....+   ..--..|.+|.+
T Consensus       328 Dg~~~l~v~~~~~-~~V~ViD~~t~~vv~~i~~vG~~P~~~~~  369 (373)
T 2mad_H          328 DGGPDLYALSAGT-EVLHIYDAGAGDQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             CCCeEEEEEcCCC-CeEEEEECCCCCEEeeecCCCCCCcEEEE
Confidence            999 777777777 79999999877543   223367888775

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=98.71  E-value=5.4e-09  Score=72.30  Aligned_cols=43  Identities=37%  Similarity=0.750  Sum_probs=36.7

Q ss_pred             ccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccccccee
Q psy950          184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY  233 (407)
Q Consensus       184 C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~  233 (407)
                      |.. +|++|+|+|++++++      +|+|.|+.||.|.+|+++|.+.+++
T Consensus         2 C~~-~nggC~~~C~n~~gg------s~~C~C~~Gy~L~~Dg~tC~d~dec   44 (53)
T 2bz6_L            2 CVN-ENGGCEQYCSDHTGT------KRSCRCHEGYSLLADGVSCTPTVEY   44 (53)
T ss_dssp             TTS-GGGGCSSEEEEETTT------EEEEECCTTEEECTTSSCEEECSSS
T ss_pred             CcC-CCCCcCCEeEcCCCC------CEEeeCCCCCEECCCCCcccCCccc
Confidence            655 789999999998873      5999999999999999999865544

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=98.69  E-value=7.3e-09  Score=73.27  Aligned_cols=40  Identities=33%  Similarity=0.682  Sum_probs=34.9

Q ss_pred             ccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccccc
Q psy950          184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTM  230 (407)
Q Consensus       184 C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~  230 (407)
                      |.. +||+|+|+|++.+++      +|.|.|+.||.|.+|+++|.+.
T Consensus         2 C~~-~nggC~~~C~n~~~g------s~~C~C~~Gy~L~~D~~tC~d~   41 (59)
T 2wph_E            2 CNI-KNGRCEQFCKNSADN------KVVCSCTEGYRLAENQKSCEPA   41 (59)
T ss_dssp             TTT-GGGGCSSEEEECSTT------CEEEECCTTEEECTTSSCEEES
T ss_pred             CcC-CCCCcCCEeEeCCCC------CEEeeCCCCcEECCCCCcccCC
Confidence            555 789999999999842      6999999999999999999853

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.66  E-value=4.8e-05  Score=74.22  Aligned_cols=273  Identities=8%  Similarity=0.037  Sum_probs=169.5

Q ss_pred             CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeC-----CCCCceeEEEeCCCCeEEEEeCCCCeEEEEecC
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSN-----GISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN  107 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~-----~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~d  107 (407)
                      ..|.+++++| .+.+|.+.... ..|...+++..........     ....+.++++++ ++++|++....+.|...+++
T Consensus       123 ~~~~~~~~s~-~~~~~~~~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~  199 (433)
T 3bws_A          123 FQPKSVRFID-NTRLAIPLLED-EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLK  199 (433)
T ss_dssp             SCBCCCEESS-SSEEEEEBTTS-SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETT
T ss_pred             CCceEEEEeC-CCeEEEEeCCC-CeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECC
Confidence            4588999999 88998887654 3799999885544432221     122466788855 67899998888999999987


Q ss_pred             CCeE-EEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCc
Q psy950          108 GGNR-QIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPC  184 (407)
Q Consensus       108 G~~~-~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C  184 (407)
                      .... ..+......|.++++.+  ..+|.+....+.|...+... +  .....+.. ...|.++                
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-~--~~~~~~~~-~~~~~~~----------------  259 (433)
T 3bws_A          200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT-K--LEIRKTDK-IGLPRGL----------------  259 (433)
T ss_dssp             TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT-T--EEEEECCC-CSEEEEE----------------
T ss_pred             CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC-C--cEEEEecC-CCCceEE----------------
Confidence            6544 44445566889999975  67989988888888888664 2  11111110 0011111                


Q ss_pred             cCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcc
Q psy950          185 FRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTN  264 (407)
Q Consensus       185 ~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~  264 (407)
                                 ++. |.+    ..-+.+....+.. .               .....|....+....   ....+.....
T Consensus       260 -----------~~~-~~g----~~l~~~~~~~~~~-~---------------~~dg~i~~~d~~~~~---~~~~~~~~~~  304 (433)
T 3bws_A          260 -----------LLS-KDG----KELYIAQFSASNQ-E---------------SGGGRLGIYSMDKEK---LIDTIGPPGN  304 (433)
T ss_dssp             -----------EEC-TTS----SEEEEEEEESCTT-C---------------SCCEEEEEEETTTTE---EEEEEEEEEC
T ss_pred             -----------EEc-CCC----CEEEEEECCCCcc-c---------------cCCCeEEEEECCCCc---EEeeccCCCC
Confidence                       110 000    0000000000000 0               011223333332211   1111111234


Q ss_pred             eEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeCCC-------------CCeE
Q psy950          265 VVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIRP-------------WAKI  329 (407)
Q Consensus       265 ~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~~~-------------~~~I  329 (407)
                      +.++.+++.++.+|++.... +.|...++++.....  .....+.++++++.++.||.+....             .+.|
T Consensus       305 ~~~~~~~~~g~~l~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v  383 (433)
T 3bws_A          305 KRHIVSGNTENKIYVSDMCC-SKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKV  383 (433)
T ss_dssp             EEEEEECSSTTEEEEEETTT-TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEE
T ss_pred             cceEEECCCCCEEEEEecCC-CEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEE
Confidence            67889999999999998888 889999988655433  3333789999999999999998764             0389


Q ss_pred             EEEECCCCcc--cccCCCceeEEEEcCCCCeEEEEeC
Q psy950          330 AWIPTTNPSS--ASSNLTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       330 ~v~~~~~~~r--l~~~l~~P~~iavdp~~g~lywtd~  364 (407)
                      .+.++.....  .......|.+++++|...+||.+..
T Consensus       384 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  420 (433)
T 3bws_A          384 YVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDF  420 (433)
T ss_dssp             EEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEET
T ss_pred             EEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEEC
Confidence            9999876643  3334568999999998888887764

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=98.63  E-value=8.5e-09  Score=70.72  Aligned_cols=41  Identities=34%  Similarity=0.810  Sum_probs=35.3

Q ss_pred             ccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccce
Q psy950          184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDE  232 (407)
Q Consensus       184 C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~  232 (407)
                      |.. +|++|+|+|+++++       +|+|.|+.||.|.+|+++|.+.++
T Consensus         1 C~~-~ng~C~~~C~n~~g-------s~~C~C~~Gy~L~~d~~tC~dide   41 (51)
T 1kig_L            1 CSL-DNGGCDQFCREERS-------EVRCSCAHGYVLGDDSKSCVSTER   41 (51)
T ss_dssp             CCT-TTTSSSSCCCEETT-------EECCCCCTTEEECTTSSCEEECSS
T ss_pred             CCC-CCCCcCCEeEcCCC-------CeEEeCCCCcEECCCCCccccCCc
Confidence            444 78999999999887       699999999999999999986444

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.63  E-value=1.7e-05  Score=75.60  Aligned_cols=234  Identities=11%  Similarity=0.087  Sum_probs=153.0

Q ss_pred             EEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCC-------CceeEEE---eCCCCeEEE-Ee
Q psy950           27 LKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGIS-------MPRDLTI---DMQTHDVYW-VD   95 (407)
Q Consensus        27 l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~-------~P~glai---D~~~~~lYw-~d   95 (407)
                      .+...---|.+++.|+.++.+|.+++.. .+|.+.+.++...+.+.-.++.       .|.||.+   |+. ++|+. ++
T Consensus         7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~-g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~   84 (334)
T 2p9w_A            7 DVKVKNLTPEDTIYDRTRQVFYQSNLYK-GRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMK   84 (334)
T ss_dssp             EECCTTCCCSCEEEETTTTEEEEEETTT-TEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEE
T ss_pred             EecCcccCCcCccCcCCCCEEEEEeccC-CEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEc
Confidence            3444445699999999999999999876 4999999996655555323322       4789999   786 88887 55


Q ss_pred             C------------CCCeEEEEecC----CCeEEEEc------c-------CCCCceEEEEeC-CEEEEEeCCC-CeEEEE
Q psy950           96 A------------KLDLIQKISYN----GGNRQIIR------R-------NLPNPMGIAVHK-SDVYWVDRNL-RTVYKA  144 (407)
Q Consensus        96 ~------------~~~~I~~~~~d----G~~~~~~~------~-------~~~~P~~lav~~-~~lYwtd~~~-~~I~~~  144 (407)
                      .            +...+.+.+++    |.....+-      +       ....|.+|+++. +.+|.++... +.|.|+
T Consensus        85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV  164 (334)
T 2p9w_A           85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV  164 (334)
T ss_dssp             ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred             ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence            2            35779999998    44333221      1       223588999998 8999999988 899999


Q ss_pred             ecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCC
Q psy950          145 SKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDP  224 (407)
Q Consensus       145 ~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~  224 (407)
                      +.++  +  ....+            +.  ..|. ....                                         
T Consensus       165 ~pdG--~--~~~~~------------~~--~~~~-~~~~-----------------------------------------  184 (334)
T 2p9w_A          165 SADG--K--TVSTF------------AW--ESGN-GGQR-----------------------------------------  184 (334)
T ss_dssp             CTTS--C--CEEEE------------EE--CCCC-SSSC-----------------------------------------
T ss_pred             eCCC--C--EEeee------------ee--cCCC-cccc-----------------------------------------
Confidence            9886  1  11111            10  1010 0000                                         


Q ss_pred             CcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcc--cc-c
Q psy950          225 KKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS--AS-S  301 (407)
Q Consensus       225 ~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~--~~-~  301 (407)
                                                            ..+.+|.|++.++.|+..+. . +++.++++..+..  .. .
T Consensus       185 --------------------------------------~G~nGIv~~pdg~~Liv~~~-~-g~L~~fD~~~pv~~~v~~~  224 (334)
T 2p9w_A          185 --------------------------------------PGYSGITFDPHSNKLIAFGG-P-RALTAFDVSKPYAWPEPVK  224 (334)
T ss_dssp             --------------------------------------CSCSEEEEETTTTEEEEESS-S-SSEEEEECSSSSCCCEECE
T ss_pred             --------------------------------------cCcceEEEeCCCCEEEEEcC-C-CeEEEEcCCCCcceeeccc
Confidence                                                  00124566666666666666 4 5666666654322  11 1


Q ss_pred             ------CCCCccEE-EEeccCCeEEEEeCCCCCeEEEEECCCCcc--cc----cCCCceeEEEEc-----CCCCeEEEEe
Q psy950          302 ------NLTNVVGV-EFDYADDKILFTQIRPWAKIAWIPTTNPSS--AS----SNLTNVVGVEFD-----YADDKILFTQ  363 (407)
Q Consensus       302 ------~~~~~~gl-AvDwi~~~LYwtd~~~~~~I~v~~~~~~~r--l~----~~l~~P~~iavd-----p~~g~lywtd  363 (407)
                            ....+.|| +++--++.||.++... +.+.+.+.|+...  ..    ..+. ++|++++     ...+.+|-.+
T Consensus       225 ~~G~~~~~~~~dgilp~~~~G~vllV~~~~~-~~~~l~S~DgW~sa~~~g~~~~~~~-~~g~tt~t~~~~~~~~~iYvv~  302 (334)
T 2p9w_A          225 INGDFGTLSGTEKIVTVPVGNESVLVGARAP-YAISFRSWDNWKSANIKKTKRSELQ-NSGFTAVADYYQGSEQGLYAVS  302 (334)
T ss_dssp             ESSCCCCCTTEEEEEEEEETTEEEEEEEETT-EEEEEECSSTTSEEEEEEEECGGGG-SSCEEEEEEEEETTEEEEEEEE
T ss_pred             ccCCcccccCcccccccccCCEEEEEEcCCC-CEEEEECCCCcceeEEeeeecCccc-cCceeEEEEeccccCCeEEEEe
Confidence                  11268885 7787777779999988 7777778888542  11    2333 8899988     6789999998


Q ss_pred             C
Q psy950          364 I  364 (407)
Q Consensus       364 ~  364 (407)
                      -
T Consensus       303 ~  303 (334)
T 2p9w_A          303 A  303 (334)
T ss_dssp             C
T ss_pred             e
Confidence            3

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.62  E-value=6.6e-05  Score=72.23  Aligned_cols=114  Identities=12%  Similarity=0.077  Sum_probs=76.1

Q ss_pred             CCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC--CCCeEEEEeCCCCCceeEEEeCCCCeEE--EEe-------C---
Q psy950           31 FRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD--GSKWTSIVSNGISMPRDLTIDMQTHDVY--WVD-------A---   96 (407)
Q Consensus        31 ~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d--G~~~~~l~~~~~~~P~glaiD~~~~~lY--w~d-------~---   96 (407)
                      ....|..++++|..++||.++.+   .|...+++  |.-....-......|..+++++.+++||  .++       .   
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~---~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK---KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT---EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc---eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceecccee
Confidence            45689999999999999999876   56666664  4322221111123588999999887544  443       1   


Q ss_pred             --CCCeEEEEecC--CCeEEEEc----cCCCCceEEEEeC--CEEEEEeCCCCeEEEEecC
Q psy950           97 --KLDLIQKISYN--GGNRQIIR----RNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKL  147 (407)
Q Consensus        97 --~~~~I~~~~~d--G~~~~~~~----~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~  147 (407)
                        ..+.+...+++  |.-...+.    ....+|.++++.+  .+||.++...+.|...+..
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~  175 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL  175 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC
Confidence              45666666664  54433322    2467899999976  4799999877888777765

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=98.62  E-value=1.4e-08  Score=70.76  Aligned_cols=42  Identities=31%  Similarity=0.661  Sum_probs=37.2

Q ss_pred             CCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccc
Q psy950          182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMD  231 (407)
Q Consensus       182 n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~  231 (407)
                      ++|.. ++++|+|+|+++++       +|+|.|+.||.|..|+++|.+.+
T Consensus         2 dEC~~-~~~~C~~~C~nt~G-------sy~C~C~~Gy~L~~d~~~C~did   43 (55)
T 2jkh_L            2 KLCSL-DNGDCDQFCHEEQN-------SVVCSCARGYTLADNGKACIPTG   43 (55)
T ss_dssp             CCTTT-GGGGCSSEEEEETT-------EEEEECCTTEEECTTSSCEEESS
T ss_pred             ccccC-CCCCcCcEeEcCCC-------CeEEeCCCCCEECCCCCeeccCc
Confidence            67877 78999999999987       69999999999999999998543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.62  E-value=4.9e-05  Score=71.65  Aligned_cols=115  Identities=14%  Similarity=0.144  Sum_probs=85.7

Q ss_pred             CCCCcceEEEeCCCCEEEEEEcCC---CCeEEEEeCCCCCeEEEEeC--CCCCceeEEEeCCCCeEEEEeCC------CC
Q psy950           31 FRSANTTSPFSPLPRLLYWIDYGQ---YPRIGKSYLDGSKWTSIVSN--GISMPRDLTIDMQTHDVYWVDAK------LD   99 (407)
Q Consensus        31 ~~~~P~~iavdp~~g~lywtd~~~---~~~I~r~~~dG~~~~~l~~~--~~~~P~glaiD~~~~~lYw~d~~------~~   99 (407)
                      ....|.+|++||. |.||+++...   ...|.+.+.++...+.++..  ....|.++++|+. +++|+++..      ..
T Consensus        85 ~~~~~~~i~~~~d-g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~  162 (333)
T 2dg1_A           85 HKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLG  162 (333)
T ss_dssp             SSSSEEEEEECTT-SCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT-SCEEEEECCCBTTBCCE
T ss_pred             CCCCcceEEECCC-CcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCC-CCEEEEeccccccCCCc
Confidence            3467999999987 6788887654   13899999998877655431  2347999999995 689998875      46


Q ss_pred             eEEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecC
Q psy950          100 LIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKL  147 (407)
Q Consensus       100 ~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~  147 (407)
                      .|.+++.++...+.+......|.++++..  +.||+++...+.|.+.+..
T Consensus       163 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          163 GVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             EEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             eEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence            79999888766555545566799999976  3699998777777776654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.59  E-value=1.3e-05  Score=75.31  Aligned_cols=114  Identities=16%  Similarity=0.230  Sum_probs=83.6

Q ss_pred             CCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEe--C--CCCCceeEEEeCCCCeEEEEeCC--------
Q psy950           30 SFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVS--N--GISMPRDLTIDMQTHDVYWVDAK--------   97 (407)
Q Consensus        30 ~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~--~--~~~~P~glaiD~~~~~lYw~d~~--------   97 (407)
                      .....|.++++|+. |.||+++.+.. +|.+.+.+|+ .+.+..  .  .+..|+++++|+ .++||++|..        
T Consensus        83 ~~~~~~~gl~~d~d-G~l~v~~~~~~-~v~~~~~~g~-~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~  158 (305)
T 3dr2_A           83 DATAFTNGNAVDAQ-QRLVHCEHGRR-AITRSDADGQ-AHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQ  158 (305)
T ss_dssp             ESCSCEEEEEECTT-SCEEEEETTTT-EEEEECTTSC-EEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGG
T ss_pred             CCCCccceeeECCC-CCEEEEECCCC-EEEEECCCCC-EEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCcccccc
Confidence            34456999999997 77999988754 8999999976 444432  1  135699999998 5689998741        


Q ss_pred             ---------CCeEEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCC-----CeEEEEecCC
Q psy950           98 ---------LDLIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNL-----RTVYKASKLA  148 (407)
Q Consensus        98 ---------~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~-----~~I~~~~~~~  148 (407)
                               .+.|.+++.++...+.+. .+..|.|+++..  ..||+++...     +.|.+.+...
T Consensus       159 ~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~  224 (305)
T 3dr2_A          159 GCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD  224 (305)
T ss_dssp             SCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred             ccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence                     357899888544443334 678999999976  4799999874     6777776654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.56  E-value=5.1e-06  Score=76.70  Aligned_cols=65  Identities=12%  Similarity=0.195  Sum_probs=52.8

Q ss_pred             eeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE-EEEccCCCCceE--EEEeCCEEEEEeCCCCeEEEEecCC
Q psy950           80 RDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR-QIIRRNLPNPMG--IAVHKSDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus        80 ~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~P~~--lav~~~~lYwtd~~~~~I~~~~~~~  148 (407)
                      .||+++  +++||.+....++|..+++..... +.+.  ...+||  |++.+++||...|..+.+...+..+
T Consensus        58 qGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l--~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~T  125 (268)
T 3nok_A           58 QGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMER--LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMP  125 (268)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEE--CTTCCEEEEEECSSCEEEEESSSCEEEEEETTT
T ss_pred             ceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEEC--CCCcceeEEEEeCCEEEEEEccCCEEEEEECCc
Confidence            699998  589999999999999999975443 3332  345665  9999999999999999999988765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.55  E-value=0.00024  Score=73.20  Aligned_cols=321  Identities=11%  Similarity=0.010  Sum_probs=181.4

Q ss_pred             eeeeecCCcceEEEcCCC-CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC-CCCe-EEEEeCCCCCceeEEEe----CC
Q psy950           15 RLALRLLKKKKKLKTSFR-SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD-GSKW-TSIVSNGISMPRDLTID----MQ   87 (407)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~-~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d-G~~~-~~l~~~~~~~P~glaiD----~~   87 (407)
                      .+..+|....+++-.-.. ..|.+++++|..+++|.++..  ..|...++. ++.. ..-+..+ ..|.+|+++    +.
T Consensus       178 ~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~d--g~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pD  254 (567)
T 1qks_A          178 QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRD--GKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWE  254 (567)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETT--SEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCT
T ss_pred             eEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCC--CeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCC
Confidence            456666665544432222 368999999999999998753  489999995 2222 1122223 369999999    68


Q ss_pred             CCeEEEEeCCCCeEEEEecCCCeE-EEEc-cC----------CCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCc
Q psy950           88 THDVYWVDAKLDLIQKISYNGGNR-QIIR-RN----------LPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNIT  153 (407)
Q Consensus        88 ~~~lYw~d~~~~~I~~~~~dG~~~-~~~~-~~----------~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~  153 (407)
                      +++||.++...++|..++...... +++. ..          ...+.+|....  ..+|++-...+.|..++... .  .
T Consensus       255 Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~-~--~  331 (567)
T 1qks_A          255 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD-L--N  331 (567)
T ss_dssp             TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC-S--S
T ss_pred             CCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCC-C--c
Confidence            999999999999999988654333 3332 11          01233555433  45666666777777777553 1  1


Q ss_pred             ccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccccccee
Q psy950          154 LPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY  233 (407)
Q Consensus       154 ~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~  233 (407)
                      ..             .+-....    +..+                           .     +..+.+|++       +
T Consensus       332 ~~-------------~v~~i~~----~~~~---------------------------~-----d~~~~pdgr-------~  355 (567)
T 1qks_A          332 NL-------------KTTEISA----ERFL---------------------------H-----DGGLDGSHR-------Y  355 (567)
T ss_dssp             EE-------------EEEEEEC----CSSE---------------------------E-----EEEECTTSC-------E
T ss_pred             cc-------------eeeeeec----cccc---------------------------c-----CceECCCCC-------E
Confidence            11             1110000    0000                           0     011233333       2


Q ss_pred             eeeec--ccceEEeecCCCCCeeeeEee-cCCcce-EEEE-EEcCCCEEEEEEe-cCCceEEEEeCCCCc-------ccc
Q psy950          234 LVFST--RTEIRALHLDPTLTAVPFKTV-SNLTNV-VGVE-FDYADDKILFTQI-RPWAKIAWIPTTNPS-------SAS  300 (407)
Q Consensus       234 Ll~s~--~~~I~~i~l~~~~~~~~~~~~-~~~~~~-~ald-~d~~~~~lywsd~-~~~~~I~~~~~~~~~-------~~~  300 (407)
                      ++.+.  .+.|.-+.+..... ....++ ....++ .+.. +++..+.+|.+.. .. +.|..++.+...       .+.
T Consensus       356 ~~va~~~sn~V~ViD~~t~kl-~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~-~~Vsvid~~~~~~~~~~~kvv~  433 (567)
T 1qks_A          356 FITAANARNKLVVIDTKEGKL-VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD-DSVALIGTDPEGHPDNAWKILD  433 (567)
T ss_dssp             EEEEEGGGTEEEEEETTTTEE-EEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS-SEEEEEECCTTTCTTTBTSEEE
T ss_pred             EEEEeCCCCeEEEEECCCCcE-EEEEeccCcCCCCccceeeECCCCCcEEEeCCCCC-CeEEEecCCCCCCccccCEEEE
Confidence            33332  23444444433211 111122 111111 1222 5777788876654 44 689999887622       111


Q ss_pred             ---cCCCCccEEEEeccCCeEEEEeCCC-----CCeEEEEECCCC-----c----cc--c------cCCCceeEEEEcCC
Q psy950          301 ---SNLTNVVGVEFDYADDKILFTQIRP-----WAKIAWIPTTNP-----S----SA--S------SNLTNVVGVEFDYA  355 (407)
Q Consensus       301 ---~~~~~~~glAvDwi~~~LYwtd~~~-----~~~I~v~~~~~~-----~----rl--~------~~l~~P~~iavdp~  355 (407)
                         ..+..+..|++.+-+++||..+...     .++|.|++++..     .    .+  .      +.-.+|..+++.|.
T Consensus       434 ~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (567)
T 1qks_A          434 SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD  513 (567)
T ss_dssp             EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT
T ss_pred             EEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCC
Confidence               2232456688999999999877422     148999987654     2    22  1      13468999999999


Q ss_pred             CCeEEEEeCC---CCCcccccCCCCCCCcceeEEE---eCCCccceeeccch
Q psy950          356 DDKILFTQIR---PWAKIAWIPTTNPSSASVNTIL---SRGKDEKAKIENEQ  401 (407)
Q Consensus       356 ~g~lywtd~~---~~~~ia~~dg~~~~~~~~~~l~---~~~~~~~~~~~~~~  401 (407)
                      ..++|.+.|.   ....|.-+|-..  +..++.|.   +..+++|+-..|++
T Consensus       514 G~~~~~s~~~~~~~~~~i~v~D~~t--~~~~~~i~~~~~~~P~g~f~~~~~~  563 (567)
T 1qks_A          514 GTEVWFSVWNGKDQESALVVVDDKT--LELKHVIKDERLVTPTGKFNVYNTM  563 (567)
T ss_dssp             SSEEEEEEECCTTSCCEEEEEETTT--TEEEEEECCTTCCSEEEEEEHHHHH
T ss_pred             CCEEEEEeecCCCCCCcEEEEECCC--ceEEEEeCCCcccCCCeeeeeeecc
Confidence            9999999995   245563344322  22333444   45557777777765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.52  E-value=0.0008  Score=65.39  Aligned_cols=268  Identities=11%  Similarity=0.011  Sum_probs=144.6

Q ss_pred             eCCCCEEEEEEc-CCCC--eEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC---------CCCeEEEEecCC
Q psy950           41 SPLPRLLYWIDY-GQYP--RIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA---------KLDLIQKISYNG  108 (407)
Q Consensus        41 dp~~g~lywtd~-~~~~--~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~---------~~~~I~~~~~dG  108 (407)
                      .|..+++|.+|. +...  .|.+.+.+......-+..+ ..| +|++.+.+++||+++.         ..+.|..++...
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            356688999987 4321  6677776533222223333 368 9999999999999985         357788988864


Q ss_pred             CeE-EEEc-c------CCCCceEEEEe--CCEEEEEeCC-CCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCC
Q psy950          109 GNR-QIIR-R------NLPNPMGIAVH--KSDVYWVDRN-LRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQP  177 (407)
Q Consensus       109 ~~~-~~~~-~------~~~~P~~lav~--~~~lYwtd~~-~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp  177 (407)
                      ... ..+. .      ....|.++++.  +.+||.+... .+.|..++ .+ ++     ++..-+..             
T Consensus       107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t-~~-----~~~~~i~~-------------  166 (373)
T 2mad_H          107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG-GS-----SDDQLLSS-------------  166 (373)
T ss_pred             CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC-CC-----EEeEEcCC-------------
Confidence            332 2222 1      13579999985  4799999875 57888888 65 21     11100000             


Q ss_pred             CCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec-ccceEEeecCCCCCeeee
Q psy950          178 PDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST-RTEIRALHLDPTLTAVPF  256 (407)
Q Consensus       178 ~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~-~~~I~~i~l~~~~~~~~~  256 (407)
                                  ++|-++.   +.+    ...|.-.|+.|..              +.+.. ...+..+...      +.
T Consensus       167 ------------~~~~~~~---~~~----~~~~~~~~~dg~~--------------~~vd~~g~~~~~~~~~------~~  207 (373)
T 2mad_H          167 ------------PTCYHIH---PGA----PSTFYLLCAQGGL--------------AKTDHAGGAAGAGLVG------AM  207 (373)
T ss_pred             ------------CceEEEE---eCC----CceEEEEcCCCCE--------------EEEECCCcEEEEEecc------cc
Confidence                        2232211   110    0134455555432              11111 1111011000      00


Q ss_pred             EeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc------------cCCCCccE---EEEeccCCeEEEE
Q psy950          257 KTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS------------SNLTNVVG---VEFDYADDKILFT  321 (407)
Q Consensus       257 ~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~------------~~~~~~~g---lAvDwi~~~LYwt  321 (407)
                      . .....-.....|...++.+||... . +.++.+++.+.....            ..+..|.|   ++++.-++.||.+
T Consensus       208 ~-~~~~p~~~~~~~~~~~~~~~~~~~-~-~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~  284 (373)
T 2mad_H          208 L-TAAQNLLTQPAQANKSGRIVWPVY-S-GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL  284 (373)
T ss_pred             c-cCCcceeecceeEecCCEEEEEcC-C-ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEE
Confidence            0 000000111234445566666553 3 456666665432110            11113455   9999999999998


Q ss_pred             eCC---------CCCeEEEEECCCCcccc--cCCCceeEEEEcCCCC-eEEEEeCCCCCcccccC
Q psy950          322 QIR---------PWAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADD-KILFTQIRPWAKIAWIP  374 (407)
Q Consensus       322 d~~---------~~~~I~v~~~~~~~rl~--~~l~~P~~iavdp~~g-~lywtd~~~~~~ia~~d  374 (407)
                      ...         . ++|.++++.....+.  .--..|.+|++.|-.. +||-+++++ ..+.-+|
T Consensus       285 ~~~~~~~~~~~~~-~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~-~~V~ViD  347 (373)
T 2mad_H          285 TSEQSAWKLHAAA-KEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGT-EVLHIYD  347 (373)
T ss_pred             eccCCcccccCCC-CeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCC-CeEEEEE
Confidence            642         2 579999998765422  2224799999999877 666666644 3344444

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.52  E-value=5.8e-05  Score=70.02  Aligned_cols=112  Identities=12%  Similarity=0.053  Sum_probs=82.5

Q ss_pred             CCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEe-CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCe
Q psy950           33 SANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVS-NGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN  110 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~  110 (407)
                      ..|.||++++. |.||.+... ...+|.+.++.......-+. .....+.|++++  +++||++++..+.+.+++.+-..
T Consensus        21 ~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~   97 (266)
T 2iwa_A           21 AFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS   97 (266)
T ss_dssp             CCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred             CCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence            35799999987 899999742 23599999997444333232 233356788887  68999999999999999987443


Q ss_pred             E-EEEccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCC
Q psy950          111 R-QIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       111 ~-~~~~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~  148 (407)
                      . ..+......+.||+.++++||.++ .++.|..++..+
T Consensus        98 v~~~i~~g~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t  135 (266)
T 2iwa_A           98 NIKNFTHQMKDGWGLATDGKILYGSD-GTSILYEIDPHT  135 (266)
T ss_dssp             EEEEEECCSSSCCEEEECSSSEEEEC-SSSEEEEECTTT
T ss_pred             EEEEEECCCCCeEEEEECCCEEEEEC-CCCeEEEEECCC
Confidence            3 333211367788898999999999 578999888765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.50  E-value=0.00011  Score=70.82  Aligned_cols=251  Identities=14%  Similarity=0.156  Sum_probs=145.1

Q ss_pred             EEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc-------cCCCCceEEEEeC-----CEEEEEe--C
Q psy950           71 IVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR-------RNLPNPMGIAVHK-----SDVYWVD--R  136 (407)
Q Consensus        71 l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-------~~~~~P~~lav~~-----~~lYwtd--~  136 (407)
                      ++.+++..|.+|++++. ++||+++...++|.+++.++.....+.       .....|.||+++.     +.||++.  .
T Consensus        26 ~va~gL~~P~~ia~~pd-G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~  104 (347)
T 3das_A           26 TVATGLNSPWGLAPLPG-GDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA  104 (347)
T ss_dssp             EEECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred             EeecCCCCceEEEEcCC-CcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence            45568999999999985 679999988999999987644443221       3456799999974     7788754  4


Q ss_pred             CCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCC
Q psy950          137 NLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCAT  216 (407)
Q Consensus       137 ~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~  216 (407)
                      ..++|.|..... +... .    ..+..+.  .|+..  .|. .   +    ++.-..|.+.                |.
T Consensus       105 ~~~~v~R~~~~~-~~~~-~----~~~~~~~--~i~~~--~p~-~---~----~H~g~~l~fg----------------pD  150 (347)
T 3das_A          105 SDNRIVRMLYDE-KKPS-G----EQLGAPD--TVFRG--IPK-G---V----IHNGGRIAFG----------------PD  150 (347)
T ss_dssp             SSEEEEEEEBCT-TSCT-T----CCBCCCE--EEEEE--ECC-C---S----SCCCCCEEEC----------------TT
T ss_pred             CCCEEEEEEeCC-CCcc-c----ccCCCcE--EEEEc--CCC-C---C----CccCccccCC----------------CC
Confidence            556888887664 1100 0    0001111  11111  011 0   0    0111111111                11


Q ss_pred             Ccccc---CCCCcccccceeeeeecccceEEeecCCCC-Ceee----eEeecCCcceEEEEEEcCCCEEEEEEecC--Cc
Q psy950          217 GTPSA---SDPKKCTTMDEYLVFSTRTEIRALHLDPTL-TAVP----FKTVSNLTNVVGVEFDYADDKILFTQIRP--WA  286 (407)
Q Consensus       217 G~~l~---~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~-~~~~----~~~~~~~~~~~ald~d~~~~~lywsd~~~--~~  286 (407)
                      |+..-   ..+..|...+.   -.....|.++..+... ..+|    .....+++++.++++|+ .+.||.+|...  ..
T Consensus       151 G~Lyvt~Gd~~~~~~~qd~---~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp-~G~L~~~d~g~~~~d  226 (347)
T 3das_A          151 KMLYAGTGESGDTGLSQDR---KSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDD-KQRLFASEFGQDTWD  226 (347)
T ss_dssp             SCEEEECBCTTCGGGTTCT---TCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECT-TCCEEEEECCSSSCE
T ss_pred             CCEEEEECCCCCCccccCC---CCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECC-CCCEEEEecCCCCCc
Confidence            11100   00111211000   0234577778766431 1111    12345789999999999 68999999754  14


Q ss_pred             eEEEEeCCCCc-------------ccc-----cCC-CCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc------ccc
Q psy950          287 KIAWIPTTNPS-------------SAS-----SNL-TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS------SAS  341 (407)
Q Consensus       287 ~I~~~~~~~~~-------------~~~-----~~~-~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~------rl~  341 (407)
                      .|.++.-.+.-             ...     .-. ..|.||++.  .+.+|...-.. .+|.++.+++..      .++
T Consensus       227 eln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~~~l~~-~~l~~v~~~~~~~~~~~e~~l  303 (347)
T 3das_A          227 ELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWMAGLRG-ERLWRIPLKGTAAAADPQAFL  303 (347)
T ss_dssp             EEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEEEESTT-CSEEEEEEETTEESSCCEEES
T ss_pred             eeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE--cCceeeccccC-CEEEEEEecCCceecceEEee
Confidence            56665422110             000     111 267899997  78999998887 689998887542      234


Q ss_pred             c-CCCceeEEEEcCCCCeEEEEeC
Q psy950          342 S-NLTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       342 ~-~l~~P~~iavdp~~g~lywtd~  364 (407)
                      + ...+|++|+++| .|.||.++.
T Consensus       304 ~~~~gR~~dv~~~p-DG~lyv~td  326 (347)
T 3das_A          304 EGEYGRLRTVAPAG-GDKLWLVTS  326 (347)
T ss_dssp             TTTSSCEEEEEEEE-TTEEEEEEC
T ss_pred             cCCCCCccEEEECC-CCcEEEEEc
Confidence            4 357999999999 689999864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.49  E-value=0.00011  Score=75.24  Aligned_cols=267  Identities=8%  Similarity=-0.031  Sum_probs=153.1

Q ss_pred             EEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecC---CCeEEEEc
Q psy950           39 PFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN---GGNRQIIR  115 (407)
Q Consensus        39 avdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~d---G~~~~~~~  115 (407)
                      ++||. +++|.+..... .|...+.+.......+..+. .|.++++++.+++||.++.. +.|..++++   +.....+ 
T Consensus       144 ~~~p~-~~~~vs~~~d~-~V~v~D~~t~~~~~~i~~g~-~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i-  218 (543)
T 1nir_A          144 DLDLP-NLFSVTLRDAG-QIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEI-  218 (543)
T ss_dssp             CCCGG-GEEEEEEGGGT-EEEEEETTTCCEEEEEECST-TEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEE-
T ss_pred             ccCCC-CEEEEEEcCCC-eEEEEECCCceEEEEEecCc-ccceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEE-
Confidence            47775 78999988764 88887766444433444344 38999999999999999987 999999994   2222233 


Q ss_pred             cCCCCceEEEEeC------CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCc
Q psy950          116 RNLPNPMGIAVHK------SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGN  189 (407)
Q Consensus       116 ~~~~~P~~lav~~------~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~n  189 (407)
                      .....|+++++..      .+||.++...+.|...+..+ +  .....+... ....+-.-||+.               
T Consensus       219 ~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~--~~~~~i~~~-g~~~~~~~~~~~---------------  279 (543)
T 1nir_A          219 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-L--EPKQIVSTR-GMTVDTQTYHPE---------------  279 (543)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-C--CEEEEEECC-EECSSSCCEESC---------------
T ss_pred             ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-c--ccceeeccc-CcccCccccccC---------------
Confidence            3466899999963      58888876667777666543 1  112222100 000000000000               


Q ss_pred             ccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCCeeeeEeecCCcceEE
Q psy950          190 GGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLTAVPFKTVSNLTNVVG  267 (407)
Q Consensus       190 g~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~~~~~~~~~~~~~~~a  267 (407)
                      .....+.+                       .+++.       +++++.  ...|.-+.+..... ..+..+.....+..
T Consensus       280 ~~v~~i~~-----------------------s~~~~-------~~~vs~~~~g~i~vvd~~~~~~-l~~~~i~~~~~~~~  328 (543)
T 1nir_A          280 PRVAAIIA-----------------------SHEHP-------EFIVNVKETGKVLLVNYKDIDN-LTVTSIGAAPFLHD  328 (543)
T ss_dssp             CCEEEEEE-----------------------CSSSS-------EEEEEETTTTEEEEEECTTSSS-CEEEEEECCSSCCC
T ss_pred             CceEEEEE-----------------------CCCCC-------EEEEEECCCCeEEEEEecCCCc-ceeEEeccCcCccC
Confidence            00011111                       11111       111111  12333344332211 11112223345677


Q ss_pred             EEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--cCCCCc---cEEEE-eccCCeEEEEeC-CCCCeEEEEECCC----
Q psy950          268 VEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SNLTNV---VGVEF-DYADDKILFTQI-RPWAKIAWIPTTN----  336 (407)
Q Consensus       268 ld~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~~~~---~glAv-Dwi~~~LYwtd~-~~~~~I~v~~~~~----  336 (407)
                      +.|++.++++|.+.... ++|..+++.......  ..+..|   .|.++ ++-.+.+|.+.. +. ++|.+++.+.    
T Consensus       329 ~~~spdg~~l~va~~~~-~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d-~~V~v~d~~~~~~~  406 (543)
T 1nir_A          329 GGWDSSHRYFMTAANNS-NKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD-GSISLIGTDPKNHP  406 (543)
T ss_dssp             EEECTTSCEEEEEEGGG-TEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSS-SEEEEEECCTTTCT
T ss_pred             ceECCCCCEEEEEecCC-CeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCC-ceEEEEEeCCCCCc
Confidence            88999999999998877 789999987665433  222122   35554 566688888876 45 7999999876    


Q ss_pred             ---Cccc--cc-CCCceeEEEEcCCCCeEEEE
Q psy950          337 ---PSSA--SS-NLTNVVGVEFDYADDKILFT  362 (407)
Q Consensus       337 ---~~rl--~~-~l~~P~~iavdp~~g~lywt  362 (407)
                         ...+  .. .-..+..|+.+|...+||-.
T Consensus       407 ~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~  438 (543)
T 1nir_A          407 QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVD  438 (543)
T ss_dssp             TTBTSEEEEEECSCSCCCCEECCTTCCEEEEC
T ss_pred             hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEe
Confidence               2221  12 22456789999976666543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.42  E-value=0.00096  Score=68.62  Aligned_cols=282  Identities=7%  Similarity=-0.072  Sum_probs=161.5

Q ss_pred             EeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecC---CCeEEEEcc
Q psy950           40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN---GGNRQIIRR  116 (407)
Q Consensus        40 vdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~d---G~~~~~~~~  116 (407)
                      .|| .+++|.++.+.. .|...+.+......-+..+ ..|+++++++.+++||.++. .+.|..+++.   +.....+ .
T Consensus       163 ~d~-~~~~~V~~~~~~-~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~~~v~~i-~  237 (567)
T 1qks_A          163 WDL-ENLFSVTLRDAG-QIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEI-K  237 (567)
T ss_dssp             CCG-GGEEEEEETTTT-EEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEE-E
T ss_pred             cCC-CceEEEEeCCCC-eEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcC-CCeEEEEECCCCCCcEeEEE-e
Confidence            555 478999988765 8888888755444334433 37999999999999999974 6799999994   3222222 3


Q ss_pred             CCCCceEEEEe------CCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcc
Q psy950          117 NLPNPMGIAVH------KSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNG  190 (407)
Q Consensus       117 ~~~~P~~lav~------~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng  190 (407)
                      ....|.++++.      +.++|.++...+.|..++..+   .+....+... ..+.+-.-||+.  |             
T Consensus       238 ~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t---~~~~~~i~~~-~~~~~~~~~~p~--~-------------  298 (567)
T 1qks_A          238 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET---LEPKKIQSTR-GMTYDEQEYHPE--P-------------  298 (567)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT---CCEEEEEECC-EECTTTCCEESC--C-------------
T ss_pred             cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC---CcEEEEEecc-ccccccccccCC--C-------------
Confidence            45689999998      368999988888888777544   1112211100 000000000000  0             


Q ss_pred             cccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeee--cccceEEeecCCCCCeeeeEeecCCcceEEE
Q psy950          191 GCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFS--TRTEIRALHLDPTLTAVPFKTVSNLTNVVGV  268 (407)
Q Consensus       191 ~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s--~~~~I~~i~l~~~~~~~~~~~~~~~~~~~al  268 (407)
                      ....+                       ....++     +  .++++  ....|..+...+.. ...+..+.....+..+
T Consensus       299 rva~i-----------------------~~s~~~-----~--~~vv~~~~~g~v~~vd~~~~~-~~~v~~i~~~~~~~d~  347 (567)
T 1qks_A          299 RVAAI-----------------------LASHYR-----P--EFIVNVKETGKILLVDYTDLN-NLKTTEISAERFLHDG  347 (567)
T ss_dssp             CEEEE-----------------------EECSSS-----S--EEEEEETTTTEEEEEETTCSS-EEEEEEEECCSSEEEE
T ss_pred             ceEEE-----------------------EEcCCC-----C--EEEEEecCCCeEEEEecCCCc-cceeeeeeccccccCc
Confidence            00000                       000111     0  01111  11233333332211 1122233344567788


Q ss_pred             EEEcCCCEEEEEEecCCceEEEEeCCCCcccc--cC-CCCc---cEEE-EeccCCeEEEEeC-CCCCeEEEEECCCCc--
Q psy950          269 EFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SN-LTNV---VGVE-FDYADDKILFTQI-RPWAKIAWIPTTNPS--  338 (407)
Q Consensus       269 d~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~-~~~~---~glA-vDwi~~~LYwtd~-~~~~~I~v~~~~~~~--  338 (407)
                      .+++.++++|.++... ++|..+++.......  .+ +..|   .|.. +++-.+.+|.|.. +. ++|.+++.+...  
T Consensus       348 ~~~pdgr~~~va~~~s-n~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~-~~Vsvid~~~~~~~  425 (567)
T 1qks_A          348 GLDGSHRYFITAANAR-NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD-DSVALIGTDPEGHP  425 (567)
T ss_dssp             EECTTSCEEEEEEGGG-TEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS-SEEEEEECCTTTCT
T ss_pred             eECCCCCEEEEEeCCC-CeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCC-CeEEEecCCCCCCc
Confidence            8999999999999888 889999988765433  44 3233   3666 4666778877765 44 789999987621  


Q ss_pred             -----ccc--c-CCCceeEEEEcCCCCeEEEEeCCCC-----CcccccCCCCC
Q psy950          339 -----SAS--S-NLTNVVGVEFDYADDKILFTQIRPW-----AKIAWIPTTNP  378 (407)
Q Consensus       339 -----rl~--~-~l~~P~~iavdp~~g~lywtd~~~~-----~~ia~~dg~~~  378 (407)
                           .+.  . .-..+-.|.++|...+||...-..+     ..|+-+|-.++
T Consensus       426 ~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          426 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence                 111  1 1133456889998777765542221     24455555544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.38  E-value=0.00016  Score=66.02  Aligned_cols=68  Identities=12%  Similarity=0.094  Sum_probs=51.9

Q ss_pred             CceeEEEeCCCCeEEEEeCCC--CeEEEEecCCCeE-EEEccCCCCc--eEEEEeCCEEEEEeCCCCeEEEEecCC
Q psy950           78 MPRDLTIDMQTHDVYWVDAKL--DLIQKISYNGGNR-QIIRRNLPNP--MGIAVHKSDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus        78 ~P~glaiD~~~~~lYw~d~~~--~~I~~~~~dG~~~-~~~~~~~~~P--~~lav~~~~lYwtd~~~~~I~~~~~~~  148 (407)
                      .-.||++|.  ++||.+....  ..|..+++..... +.+ .-...+  .||++.+++||..+|.++.++..+..+
T Consensus        22 ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t   94 (243)
T 3mbr_X           22 FTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRA-EVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLAT   94 (243)
T ss_dssp             CEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             ccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCc
Confidence            456999996  8999997654  6899999975544 332 222344  567889999999999999999998765

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.37  E-value=8.3e-06  Score=81.76  Aligned_cols=146  Identities=12%  Similarity=0.137  Sum_probs=102.1

Q ss_pred             cceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC-CCCeEEEEe--C------CCCCceeEEEeCC---CCe
Q psy950           23 KKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD-GSKWTSIVS--N------GISMPRDLTIDMQ---THD   90 (407)
Q Consensus        23 ~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d-G~~~~~l~~--~------~~~~P~glaiD~~---~~~   90 (407)
                      ....++..++..|++|+++|. |.||.++... .+|.+...+ |. .+.+..  .      +..-+.|||+++.   ++.
T Consensus        17 f~~~~~a~~l~~P~~~a~~pd-G~l~V~e~~g-g~I~~~~~~~g~-~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~   93 (454)
T 1cru_A           17 FDKKVILSNLNKPHALLWGPD-NQIWLTERAT-GKILRVNPESGS-VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY   93 (454)
T ss_dssp             SCEEEEECCCSSEEEEEECTT-SCEEEEETTT-CEEEEECTTTCC-EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE
T ss_pred             eEEEEEECCCCCceEEEEcCC-CcEEEEEcCC-CEEEEEECCCCc-EeEEecCCccccccCCCCceeEEEECCCcCcCCE
Confidence            455667778999999999997 7899999764 379999875 44 333332  1      1234559999997   899


Q ss_pred             EEEEeCC------------CCeEEEEecCCC-----eEEEEc-----cCCCCceEEEEeC-CEEEEEeCC----------
Q psy950           91 VYWVDAK------------LDLIQKISYNGG-----NRQIIR-----RNLPNPMGIAVHK-SDVYWVDRN----------  137 (407)
Q Consensus        91 lYw~d~~------------~~~I~~~~~dG~-----~~~~~~-----~~~~~P~~lav~~-~~lYwtd~~----------  137 (407)
                      ||+++..            ..+|.+..+++.     ..+++.     .....+.+|++.. ++||++...          
T Consensus        94 lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~  173 (454)
T 1cru_A           94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLF  173 (454)
T ss_dssp             EEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTT
T ss_pred             EEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccc
Confidence            9999864            357999888642     234443     2234588999976 799999542          


Q ss_pred             ----------------------CCeEEEEecCCCC---CC----cccEEcccCCCCceeeEEe
Q psy950          138 ----------------------LRTVYKASKLAST---NI----TLPTPIRTGLSGLRDIAIF  171 (407)
Q Consensus       138 ----------------------~~~I~~~~~~~~g---~~----~~~~~i~~~~~~p~~i~i~  171 (407)
                                            .++|.|++.+++-   +.    ...+++..++..|.++++.
T Consensus       174 ~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~d  236 (454)
T 1cru_A          174 LPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFT  236 (454)
T ss_dssp             SCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEEC
T ss_pred             cccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEEC
Confidence                                  3579999987610   00    0346777788888888865

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.35  E-value=0.00041  Score=67.53  Aligned_cols=236  Identities=12%  Similarity=0.051  Sum_probs=145.2

Q ss_pred             CcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEE
Q psy950           34 ANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQI  113 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~  113 (407)
                      ...+++++| .+.+|.+.... ..|...+++.......+......|.++++++.++.||.+....+.|...++.......
T Consensus       171 ~v~~~~~~~-~~~~~~s~~~d-~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~  248 (433)
T 3bws_A          171 FVETISIPE-HNELWVSQMQA-NAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR  248 (433)
T ss_dssp             EEEEEEEGG-GTEEEEEEGGG-TEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ceeEEEEcC-CCEEEEEECCC-CEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE
Confidence            356788855 47888887765 4899999886555444444455899999999999999999888999999987655533


Q ss_pred             EccCCCCceEEEEeC--CEEEEEeCC-------CCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCc
Q psy950          114 IRRNLPNPMGIAVHK--SDVYWVDRN-------LRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPC  184 (407)
Q Consensus       114 ~~~~~~~P~~lav~~--~~lYwtd~~-------~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C  184 (407)
                      .......|.++++..  ..||.+...       .+.|...+..+ +  .....+            .+.           
T Consensus       249 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~-~--~~~~~~------------~~~-----------  302 (433)
T 3bws_A          249 KTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK-E--KLIDTI------------GPP-----------  302 (433)
T ss_dssp             ECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT-T--EEEEEE------------EEE-----------
T ss_pred             EecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC-C--cEEeec------------cCC-----------
Confidence            334445688899875  467766542       23444444432 1  000000            000           


Q ss_pred             cCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeee--cccceEEeecCCCCCeeeeEeecCC
Q psy950          185 FRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFS--TRTEIRALHLDPTLTAVPFKTVSNL  262 (407)
Q Consensus       185 ~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s--~~~~I~~i~l~~~~~~~~~~~~~~~  262 (407)
                           +...++++                       .+++.       .++++  ....+....+....   ....+...
T Consensus       303 -----~~~~~~~~-----------------------~~~g~-------~l~~~~~~~~~v~v~d~~~~~---~~~~~~~~  344 (433)
T 3bws_A          303 -----GNKRHIVS-----------------------GNTEN-------KIYVSDMCCSKIEVYDLKEKK---VQKSIPVF  344 (433)
T ss_dssp             -----ECEEEEEE-----------------------CSSTT-------EEEEEETTTTEEEEEETTTTE---EEEEEECS
T ss_pred             -----CCcceEEE-----------------------CCCCC-------EEEEEecCCCEEEEEECCCCc---EEEEecCC
Confidence                 00001111                       11111       12222  12234434443221   11122334


Q ss_pred             cceEEEEEEcCCCEEEEEEecC-------------CceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeCCCCC
Q psy950          263 TNVVGVEFDYADDKILFTQIRP-------------WAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIRPWA  327 (407)
Q Consensus       263 ~~~~ald~d~~~~~lywsd~~~-------------~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~~~~~  327 (407)
                      ..+.++++++.++.||.+....             .+.|+..++.......  .....|.++++++-++.||.+.... +
T Consensus       345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d-~  423 (433)
T 3bws_A          345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLD-H  423 (433)
T ss_dssp             SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTT-T
T ss_pred             CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCC-C
Confidence            5577899999999999987653             0378889887655443  2233789999999999999998867 7


Q ss_pred             eEEEEECCC
Q psy950          328 KIAWIPTTN  336 (407)
Q Consensus       328 ~I~v~~~~~  336 (407)
                      +|.+.++++
T Consensus       424 ~i~v~~~~~  432 (433)
T 3bws_A          424 QIRVYRRDG  432 (433)
T ss_dssp             EEEEEEETT
T ss_pred             eEEEEEecC
Confidence            898887664

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.35  E-value=0.00043  Score=63.06  Aligned_cols=108  Identities=8%  Similarity=-0.070  Sum_probs=78.6

Q ss_pred             cceEEEeCCCCEEEEEEcCC-CCeEEEEeCCCCCeEEEEe-CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE-
Q psy950           35 NTTSPFSPLPRLLYWIDYGQ-YPRIGKSYLDGSKWTSIVS-NGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR-  111 (407)
Q Consensus        35 P~~iavdp~~g~lywtd~~~-~~~I~r~~~dG~~~~~l~~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~-  111 (407)
                      -.|+++|.  +.||.+.... .++|.+.++.......-+. ..-....||+++  +++||.+++..+.+.++|.+.... 
T Consensus        23 tqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           23 TEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             EEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEE
Confidence            47999996  8999986532 3599999997444333222 122244677776  699999999999999999875544 


Q ss_pred             EEEccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCC
Q psy950          112 QIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       112 ~~~~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~  148 (407)
                      ..+.. ...+.||+.++++||.+|. +++|...+..+
T Consensus        99 ~ti~~-~~~Gwglt~dg~~L~vSdg-s~~l~~iDp~t  133 (243)
T 3mbr_X           99 ARFRY-PGEGWALTSDDSHLYMSDG-TAVIRKLDPDT  133 (243)
T ss_dssp             EEEEC-SSCCCEEEECSSCEEEECS-SSEEEEECTTT
T ss_pred             EEEeC-CCCceEEeeCCCEEEEECC-CCeEEEEeCCC
Confidence            44432 3478999999999999995 77888877654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.32  E-value=0.00014  Score=70.40  Aligned_cols=104  Identities=12%  Similarity=0.108  Sum_probs=71.4

Q ss_pred             CCCcceEEEeCCCCEEEEEEc-----------CCCCeEEEEeCCCC--CeEEEEeCC------CCCceeEEEeCC---CC
Q psy950           32 RSANTTSPFSPLPRLLYWIDY-----------GQYPRIGKSYLDGS--KWTSIVSNG------ISMPRDLTIDMQ---TH   89 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~-----------~~~~~I~r~~~dG~--~~~~l~~~~------~~~P~glaiD~~---~~   89 (407)
                      ...|..|+++| .|.+|-+..           ....+|.+.+.+..  ..+.|..++      -..|.||.+...   +.
T Consensus        49 ~~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~  127 (355)
T 3sre_A           49 DNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV  127 (355)
T ss_dssp             CSCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCE
T ss_pred             CCCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcE
Confidence            45699999999 699999851           13468999999843  333433333      248999999763   34


Q ss_pred             eEEEEeCC--CCeEEEEec--CCCeEEEEc----cCCCCceEEEEeC-CEEEEEeC
Q psy950           90 DVYWVDAK--LDLIQKISY--NGGNRQIIR----RNLPNPMGIAVHK-SDVYWVDR  136 (407)
Q Consensus        90 ~lYw~d~~--~~~I~~~~~--dG~~~~~~~----~~~~~P~~lav~~-~~lYwtd~  136 (407)
                      +||+++..  ..+|+...+  ++...+.+.    ..+..|-+++++. +.+|.++.
T Consensus       128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~  183 (355)
T 3sre_A          128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATND  183 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEES
T ss_pred             EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCC
Confidence            89999987  456666555  444433332    4578899999987 78888754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.32  E-value=0.00038  Score=64.19  Aligned_cols=105  Identities=12%  Similarity=-0.002  Sum_probs=78.3

Q ss_pred             ceEEEeCCCCEEEEEEcCCCCeEEEEeCC-CCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE-EE
Q psy950           36 TTSPFSPLPRLLYWIDYGQYPRIGKSYLD-GSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR-QI  113 (407)
Q Consensus        36 ~~iavdp~~g~lywtd~~~~~~I~r~~~d-G~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~  113 (407)
                      +||+++  .+.||.+.... .+|.+.++. |.-...++. .-....||+++  +++||.+++..+.+.++|.+.... ..
T Consensus        58 qGL~~~--~~~Ly~stG~~-g~v~~iD~~Tgkv~~~~l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           58 QGLVFH--QGHFFESTGHQ-GTLRQLSLESAQPVWMERL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             EEEEEE--TTEEEEEETTT-TEEEECCSSCSSCSEEEEC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             ceEEEE--CCEEEEEcCCC-CEEEEEECCCCcEEeEECC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            799998  58999998764 478888887 444444432 22244677776  689999999999999999875544 34


Q ss_pred             EccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCC
Q psy950          114 IRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       114 ~~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~  148 (407)
                      +.. ...+.||+.++++||.+| .+++|..++..+
T Consensus       132 i~~-~~eGwGLt~Dg~~L~vSd-Gs~~l~~iDp~T  164 (268)
T 3nok_A          132 TRY-SGEGWGLCYWNGKLVRSD-GGTMLTFHEPDG  164 (268)
T ss_dssp             EEC-SSCCCCEEEETTEEEEEC-SSSEEEEECTTT
T ss_pred             EeC-CCceeEEecCCCEEEEEC-CCCEEEEEcCCC
Confidence            432 356899999999999999 477888888664

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.26  E-value=0.00014  Score=66.98  Aligned_cols=66  Identities=14%  Similarity=0.035  Sum_probs=51.7

Q ss_pred             eeEEEeCCCCeEEEEeCCCC--eEEEEecCCCeE-EEEccCCCCce--EEEEeCCEEEEEeCCCCeEEEEecCC
Q psy950           80 RDLTIDMQTHDVYWVDAKLD--LIQKISYNGGNR-QIIRRNLPNPM--GIAVHKSDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus        80 ~glaiD~~~~~lYw~d~~~~--~I~~~~~dG~~~-~~~~~~~~~P~--~lav~~~~lYwtd~~~~~I~~~~~~~  148 (407)
                      .||+++  +++||.+....+  .|..+++..... +.+. -...+|  ||++.+++||...|..+.+...+..+
T Consensus        46 qGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t  116 (262)
T 3nol_A           46 EGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-LGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN  116 (262)
T ss_dssp             EEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-CCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             ceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEe-cCCccceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence            799998  579999987654  899999975444 3332 234565  48999999999999999999999875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.25  E-value=0.0012  Score=61.65  Aligned_cols=254  Identities=12%  Similarity=-0.020  Sum_probs=137.6

Q ss_pred             CcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCC------CCCceeEEEeCCCCeEEEEeCC----------
Q psy950           34 ANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNG------ISMPRDLTIDMQTHDVYWVDAK----------   97 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~------~~~P~glaiD~~~~~lYw~d~~----------   97 (407)
                      .|.+++++|..+++|.+.... ..|...+++.......+...      ...|.++++++.++.||++...          
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~-~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  122 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHY-GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV  122 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCceeEECCCCCEEEEEeCCC-CcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccccccccc
Confidence            699999999988999998665 48999998755444334322      1238999999999999999854          


Q ss_pred             -CCeEEEEecCCCe-EE--EEccCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCC-CCceeeEEe
Q psy950           98 -LDLIQKISYNGGN-RQ--IIRRNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGL-SGLRDIAIF  171 (407)
Q Consensus        98 -~~~I~~~~~dG~~-~~--~~~~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~-~~p~~i~i~  171 (407)
                       .+.|...++.... .+  ........+.++++.+ +.+|..+   +.|...+..+ +.  ....+.... ..|..    
T Consensus       123 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~---~~i~~~d~~~-~~--~~~~~~~~~~~~~~~----  192 (349)
T 1jmx_B          123 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKT-GK--YTVALPLRNWNRKGY----  192 (349)
T ss_dssp             CCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTT-CC--EEEEECSTTCCCTTB----
T ss_pred             CCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEEcc---CcEEEEeCCC-Cc--eeccccccccCCccc----
Confidence             5789999986522 11  1112233577888865 5577753   2377777654 21  111111100 00000    


Q ss_pred             eecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcc--cccceeee--e-ecccceEEee
Q psy950          172 DIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC--TTMDEYLV--F-STRTEIRALH  246 (407)
Q Consensus       172 ~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C--~~~~~~Ll--~-s~~~~I~~i~  246 (407)
                         ..|  .......  .+.-.+..                ..|.+..+.+|+..-  .....+.+  + .....+..+.
T Consensus       193 ---~~~--~~~~~~~--~~~~~~~~----------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (349)
T 1jmx_B          193 ---SAP--DVLYFWP--HQSPRHEF----------------SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE  249 (349)
T ss_dssp             ---CCC--BCCCCCC--CCCTTCEE----------------EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE
T ss_pred             ---cCc--cceeeec--CCCcceeE----------------EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc
Confidence               000  0000000  00000000                000000111111000  00000111  1 0111222221


Q ss_pred             cCCCCCeeeeEeecCCcceEEEEEEc-CCCEEEEEEecCCceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeC
Q psy950          247 LDPTLTAVPFKTVSNLTNVVGVEFDY-ADDKILFTQIRPWAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQI  323 (407)
Q Consensus       247 l~~~~~~~~~~~~~~~~~~~ald~d~-~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~  323 (407)
                      +           -.....+.++.+++ .++.+|.+   . +.|..+++.+.....  ..+..+.++++++-++.||.+ .
T Consensus       250 ~-----------~~~~~~~~~~~~sp~dg~~l~~~---~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~  313 (349)
T 1jmx_B          250 F-----------ADLTELYFTGLRSPKDPNQIYGV---L-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLG-G  313 (349)
T ss_dssp             E-----------EECSSCEEEEEECSSCTTEEEEE---E-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEE-S
T ss_pred             c-----------ccCCCcceeeEecCCCCCEEEEE---c-CeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEe-c
Confidence            1           11233567888999 88899888   4 679999887765433  344478999999999999986 4


Q ss_pred             CCCCeEEEEECCCCc
Q psy950          324 RPWAKIAWIPTTNPS  338 (407)
Q Consensus       324 ~~~~~I~v~~~~~~~  338 (407)
                      .. ++|.+.++....
T Consensus       314 ~~-~~v~v~d~~~~~  327 (349)
T 1jmx_B          314 TF-NDLAVFNPDTLE  327 (349)
T ss_dssp             BS-SEEEEEETTTTE
T ss_pred             CC-CeEEEEeccccc
Confidence            44 689999887654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.22  E-value=0.00058  Score=63.52  Aligned_cols=100  Identities=10%  Similarity=0.005  Sum_probs=63.5

Q ss_pred             EEEEcCCCCeEEEEeCCCCCeEEEEeCCC-C-CceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE-EEEc-cC----CC
Q psy950           48 YWIDYGQYPRIGKSYLDGSKWTSIVSNGI-S-MPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR-QIIR-RN----LP  119 (407)
Q Consensus        48 ywtd~~~~~~I~r~~~dG~~~~~l~~~~~-~-~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~-~~----~~  119 (407)
                      +.+.... ..|...++........+..+. . .|.++++++.+++||++....+.|..+++..... ..+. ..    ..
T Consensus         4 ~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~   82 (337)
T 1pby_B            4 ILAPARP-DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEETT-TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEcCCC-CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence            3344333 366666665433332233222 1 5999999999999999999889999999875544 3332 21    12


Q ss_pred             CceEEEEeC--CEEEEEeC-----------CCCeEEEEecCC
Q psy950          120 NPMGIAVHK--SDVYWVDR-----------NLRTVYKASKLA  148 (407)
Q Consensus       120 ~P~~lav~~--~~lYwtd~-----------~~~~I~~~~~~~  148 (407)
                      .|.++++..  ++||+++.           ..+.|...+..+
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~  124 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET  124 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCC
Confidence            788999975  58898852           235666666543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.06  E-value=4.7e-05  Score=77.97  Aligned_cols=275  Identities=9%  Similarity=0.022  Sum_probs=164.1

Q ss_pred             CCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCC-CCCceeEEEe--CCCCeEEEEe-----------------CCCCeEE
Q psy950           43 LPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNG-ISMPRDLTID--MQTHDVYWVD-----------------AKLDLIQ  102 (407)
Q Consensus        43 ~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~-~~~P~glaiD--~~~~~lYw~d-----------------~~~~~I~  102 (407)
                      ..++||.+|..+. +|.|.+++--....+++-. ...|+|+++.  +.+++||.+.                 ...+.+.
T Consensus       100 DG~~lfVnd~~~~-rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANT-RVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTT-EEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCC-EEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            5789999998864 9999999987655555532 3579999984  8899999994                 4455888


Q ss_pred             EEecCCCeEEEEccCCCCceEEEEe--CCEEEEEeCCCCe--------------EEEEecCCCCCCcccEEcc-cCCCCc
Q psy950          103 KISYNGGNRQIIRRNLPNPMGIAVH--KSDVYWVDRNLRT--------------VYKASKLASTNITLPTPIR-TGLSGL  165 (407)
Q Consensus       103 ~~~~dG~~~~~~~~~~~~P~~lav~--~~~lYwtd~~~~~--------------I~~~~~~~~g~~~~~~~i~-~~~~~p  165 (407)
                      .++.+.....-.......|.++++.  +.++|.|...++.              |...+...     ....+. ......
T Consensus       179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~-----~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE-----IEKAIAAGDYQEL  253 (595)
T ss_dssp             EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH-----HHHHHHHTCSEEE
T ss_pred             EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccc-----eeEeccCCCeeEE
Confidence            9888865542211222389999984  5899999877643              22222110     000000 011112


Q ss_pred             eeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecc--cceE
Q psy950          166 RDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTR--TEIR  243 (407)
Q Consensus       166 ~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~--~~I~  243 (407)
                      .++.|.+...++.   ...          +..           -..-.-|+|..+.+||+       +++.+..  ..+.
T Consensus       254 ~~V~VID~~~~~~---~~~----------~~~-----------Ipvg~~PhGv~~sPDGk-------~v~V~~~~s~~Vs  302 (595)
T 1fwx_A          254 NGVKVVDGRKEAS---SLF----------TRY-----------IPIANNPHGCNMAPDKK-------HLCVAGKLSPTVT  302 (595)
T ss_dssp             TTEEEEECSGGGC---CSS----------EEE-----------EEEESSCCCEEECTTSS-------EEEEECTTSSBEE
T ss_pred             CcEEEEeCcccCC---cee----------EEE-----------EecCCCceEEEEcCCCC-------EEEEeCCCCCeEE
Confidence            3466666443110   000          000           01112345566667765       2222221  2333


Q ss_pred             EeecCCC---------CCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCC----------Ccccc--cC
Q psy950          244 ALHLDPT---------LTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTN----------PSSAS--SN  302 (407)
Q Consensus       244 ~i~l~~~---------~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~----------~~~~~--~~  302 (407)
                      -+.+...         ....++..+.....|..++||+.+ ++|.+.... +.|..++++.          ..++.  .+
T Consensus       303 Vid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ld-sqV~kwdi~~a~~~~~g~~~~~vi~kidV  380 (595)
T 1fwx_A          303 VLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLD-SQVVKWNIEDAIRAYAGEKVDPIKDKLDV  380 (595)
T ss_dssp             EEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTT-TEEEEEEHHHHHHHHHTCSCCCEEEEEEC
T ss_pred             EEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecC-CcEEEEEhhHhhhhhcccccceeEEEeec
Confidence            3333210         001223344556678999999988 999999888 8888888765          11111  33


Q ss_pred             CCCc------cEEEEeccCCeEEEEeCCCCCeE-----------EEEECCCCc-ccc---cCCCceeEEEEcCCC
Q psy950          303 LTNV------VGVEFDYADDKILFTQIRPWAKI-----------AWIPTTNPS-SAS---SNLTNVVGVEFDYAD  356 (407)
Q Consensus       303 ~~~~------~glAvDwi~~~LYwtd~~~~~~I-----------~v~~~~~~~-rl~---~~l~~P~~iavdp~~  356 (407)
                      +-.|      .|+++.+.++.||-.+....+++           ..++..|.. .++   .....|+..+++|..
T Consensus       381 ~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~~~ePh~~~i~~~~  455 (595)
T 1fwx_A          381 HYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPS  455 (595)
T ss_dssp             SSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEESSCCCCEEEECTT
T ss_pred             ccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEcCCCCCCceEEccHH
Confidence            2233      67788999999999999875566           778887654 222   236899999999854

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.05  E-value=0.002  Score=61.98  Aligned_cols=103  Identities=9%  Similarity=0.038  Sum_probs=70.4

Q ss_pred             CCEEEEEEcCC----CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC---------CCCeEEEEecCCCe
Q psy950           44 PRLLYWIDYGQ----YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA---------KLDLIQKISYNGGN  110 (407)
Q Consensus        44 ~g~lywtd~~~----~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~---------~~~~I~~~~~dG~~  110 (407)
                      .+++|.+|.+.    ...|.+.+.+.......+..+ ..| +|++++.+++||.++.         ..+.|..++.....
T Consensus        15 ~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g-~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~   92 (361)
T 2oiz_A           15 ENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTA-FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT   92 (361)
T ss_dssp             GGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECC-EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred             CCEEEEECCCCCccccCeEEEEECCCCeEEEEecCC-CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence            46899988652    237888876533332233333 468 9999999999999984         24579999886433


Q ss_pred             E-EEEc-c-----CCCCceEEEEeC--CEEEEEeCC-CCeEEEEecCC
Q psy950          111 R-QIIR-R-----NLPNPMGIAVHK--SDVYWVDRN-LRTVYKASKLA  148 (407)
Q Consensus       111 ~-~~~~-~-----~~~~P~~lav~~--~~lYwtd~~-~~~I~~~~~~~  148 (407)
                      . ..+. .     ....|.+|++..  .+||.++.. .++|..++...
T Consensus        93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~  140 (361)
T 2oiz_A           93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK  140 (361)
T ss_dssp             EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT
T ss_pred             EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC
Confidence            3 3332 1     246899999954  799999875 57788887665

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.04  E-value=0.0086  Score=55.78  Aligned_cols=99  Identities=8%  Similarity=-0.001  Sum_probs=69.0

Q ss_pred             ceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeC-CCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEE-E
Q psy950           36 TTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSN-GISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQ-I  113 (407)
Q Consensus        36 ~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~-~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~-~  113 (407)
                      .|+++.+ .+++|.+..... .|.+.+++.......+.. ....|.++++++.++.+|.+....+.|...+++..... .
T Consensus         3 ~g~~~~~-~~~~~v~~~~~~-~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~   80 (349)
T 1jmx_B            3 TGPALKA-GHEYMIVTNYPN-NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   80 (349)
T ss_dssp             -CCCCCT-TCEEEEEEETTT-EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccccccC-CCEEEEEeCCCC-eEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence            4566654 478888887654 899998875443333332 22369999999998899999988999999999865543 3


Q ss_pred             Ec-cC-----CCCceEEEEeC--CEEEEEeC
Q psy950          114 IR-RN-----LPNPMGIAVHK--SDVYWVDR  136 (407)
Q Consensus       114 ~~-~~-----~~~P~~lav~~--~~lYwtd~  136 (407)
                      +. ..     ...|.++++.+  .+||.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  111 (349)
T 1jmx_B           81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVN  111 (349)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             EEcccccccccccccceEECCCCCEEEEEcc
Confidence            22 11     23488999865  58888764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.03  E-value=0.00018  Score=68.23  Aligned_cols=111  Identities=14%  Similarity=0.188  Sum_probs=82.8

Q ss_pred             CcceEEEeCCCCEEEEEEcCC-----CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecC-
Q psy950           34 ANTTSPFSPLPRLLYWIDYGQ-----YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN-  107 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~~~-----~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~d-  107 (407)
                      .|.++++||. |.+|+++.+.     ...|++.+ +|.-. .+. .....|+++++++.++.|||++...+.|.+.+++ 
T Consensus       135 ~~~~i~~d~~-G~l~v~~~~~~~~~~~~~l~~~~-~g~~~-~~~-~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~  210 (326)
T 2ghs_A          135 RSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA-KGKVT-KLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA  210 (326)
T ss_dssp             EEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE-TTEEE-EEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             CCCCEEECCC-CCEEEEeCCCcCCCCceEEEEEe-CCcEE-Eee-CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccc
Confidence            4789999996 6688887531     24899998 65432 232 2456799999999999999999999999999986 


Q ss_pred             --C-C--eEEEEc---cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCC
Q psy950          108 --G-G--NRQIIR---RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       108 --G-~--~~~~~~---~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~  148 (407)
                        | .  +++.+.   .....|.+++++. +.||.+.+..+.|.+.+..+
T Consensus       211 ~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g  260 (326)
T 2ghs_A          211 RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG  260 (326)
T ss_dssp             TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred             ccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC
Confidence              4 2  223332   2346789999986 78888888888999988743

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.99  E-value=0.00044  Score=67.21  Aligned_cols=128  Identities=4%  Similarity=-0.203  Sum_probs=80.7

Q ss_pred             eeeeecCCcceEEEcCCC-CCcceEEEeCCCCEEEEEEcC--------CCCeEEEEeCCCCCe-EEEEeC-C-----CCC
Q psy950           15 RLALRLLKKKKKLKTSFR-SANTTSPFSPLPRLLYWIDYG--------QYPRIGKSYLDGSKW-TSIVSN-G-----ISM   78 (407)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~-~~P~~iavdp~~g~lywtd~~--------~~~~I~r~~~dG~~~-~~l~~~-~-----~~~   78 (407)
                      .+..+|....+++-.-.+ ..| +++++|..+++|.++.+        ....|...++.-... ..+.-. .     ...
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~  125 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR  125 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCC
Confidence            444666665544433222 348 99999999999999842        123788888774443 333221 0     247


Q ss_pred             ceeEEEeCCCCeEEEEeCC-CCeEEE--EecCCCeEEEEccCCCCceEEEEeCCEEEEEeCCCCeEEEEecC
Q psy950           79 PRDLTIDMQTHDVYWVDAK-LDLIQK--ISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKL  147 (407)
Q Consensus        79 P~glaiD~~~~~lYw~d~~-~~~I~~--~~~dG~~~~~~~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~  147 (407)
                      |.+|++++.+++||+++.. .+.+..  +|...  ...+.  ...++.+.-.++..|.+....+++..++..
T Consensus       126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~--v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~  193 (368)
T 1mda_H          126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTK--SASCFHIHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEE--CSSCCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred             cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEE--CCCceEEccCCCeEEEEEcCCCCEEEEECc
Confidence            9999999999999999976 567777  66544  33322  112233444556777777766666666654

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.98  E-value=4.4e-06  Score=57.38  Aligned_cols=41  Identities=27%  Similarity=0.692  Sum_probs=34.7

Q ss_pred             CCCCccCCC--------cccccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          180 ENNPCFRTG--------NGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       180 ~~n~C~~~~--------ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      ..++|.. .        ++.|+|.|+++++       +|+|.|+.||.|..|+++|.
T Consensus         3 DidEC~~-~~~~~~~~~~~~C~~~C~n~~G-------sy~C~C~~Gy~~~~d~~~C~   51 (53)
T 1apq_A            3 DLDECAS-RSKSGEEDPQPQCQHLCHNYVG-------GYFCSCRPGYELQEDRHSCQ   51 (53)
T ss_dssp             SCCTTTC-STTTCCCSSSCTTSSEEEEETT-------EEEEECSTTCEECTTSSCEE
T ss_pred             ccccccC-cccccccccCCCCCCEeECCCC-------CeEEECCCCCeECCCCCccC
Confidence            3577865 2        4789999999987       69999999999999999996

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.92  E-value=0.0071  Score=57.80  Aligned_cols=102  Identities=9%  Similarity=-0.066  Sum_probs=71.1

Q ss_pred             CcceEEEEEEcCCCEEEEEEecCCceEEEEeCC---CCcc-----cccC-----C-C-------CccEEE-EeccCCeEE
Q psy950          262 LTNVVGVEFDYADDKILFTQIRPWAKIAWIPTT---NPSS-----ASSN-----L-T-------NVVGVE-FDYADDKIL  319 (407)
Q Consensus       262 ~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~---~~~~-----~~~~-----~-~-------~~~glA-vDwi~~~LY  319 (407)
                      ...+.++++++.+++||.++... +.|....++   |...     ...+     + .       .+.+++ +++.++.||
T Consensus       192 g~~p~~~~~spdg~~l~v~~~~~-~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~  270 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYALMEAG-NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTT-TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             CCCCCEeEECCCCCEEEEEECCC-CeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence            45688899999999999998766 667666543   2211     1111     1 1       378999 999999999


Q ss_pred             EEeCCCCC-----eEEEEECCC-Cc-c-c---cc-CCCceeEEEEcC---CCCeEEEEeCC
Q psy950          320 FTQIRPWA-----KIAWIPTTN-PS-S-A---SS-NLTNVVGVEFDY---ADDKILFTQIR  365 (407)
Q Consensus       320 wtd~~~~~-----~I~v~~~~~-~~-r-l---~~-~l~~P~~iavdp---~~g~lywtd~~  365 (407)
                      .++... +     +|.+.+++. .. . +   .. ....|++++++|   ..++||.++..
T Consensus       271 v~~~~~-~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          271 ASSRAN-KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             EEEEES-STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             EECCCC-CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence            988765 4     799888752 22 1 1   21 235799999999   57889988764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.88  E-value=0.00044  Score=66.76  Aligned_cols=112  Identities=10%  Similarity=0.014  Sum_probs=82.8

Q ss_pred             CcceEEEeCC---CCEEEEEEcCC-CCeEEEEeCCC-CCeEEEEe----CCCCCceeEEEeCCCCeEEEEeC--------
Q psy950           34 ANTTSPFSPL---PRLLYWIDYGQ-YPRIGKSYLDG-SKWTSIVS----NGISMPRDLTIDMQTHDVYWVDA--------   96 (407)
Q Consensus        34 ~P~~iavdp~---~g~lywtd~~~-~~~I~r~~~dG-~~~~~l~~----~~~~~P~glaiD~~~~~lYw~d~--------   96 (407)
                      +|.||.+.+.   +.+||.+|... .++|+...+|- +...+++.    ..+..|+.+++|+ .+++|+++.        
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCccc
Confidence            7999999773   45899999873 45777766663 23444443    2466899999998 477777654        


Q ss_pred             ---------CCCeEEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCC
Q psy950           97 ---------KLDLIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus        97 ---------~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~  148 (407)
                               ..+.|.+++.  ...+++...+..|.||++..  ..||++|...++|++.+...
T Consensus       192 ~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence                     2356777765  34556667889999999975  58999999999999888764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.78  E-value=9.4e-05  Score=74.06  Aligned_cols=105  Identities=14%  Similarity=0.195  Sum_probs=79.6

Q ss_pred             CcceEEEeCC---CCEEEEEEcC-------C----CCeEEEEeCCCC-----CeEEEEe----CCCCCceeEEEeCCCCe
Q psy950           34 ANTTSPFSPL---PRLLYWIDYG-------Q----YPRIGKSYLDGS-----KWTSIVS----NGISMPRDLTIDMQTHD   90 (407)
Q Consensus        34 ~P~~iavdp~---~g~lywtd~~-------~----~~~I~r~~~dG~-----~~~~l~~----~~~~~P~glaiD~~~~~   90 (407)
                      .+.+||++|.   +++||+++..       .    ..+|.|..+++.     +.++|+.    .....+.+|++++. ++
T Consensus        78 Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pD-G~  156 (454)
T 1cru_A           78 GLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPD-QK  156 (454)
T ss_dssp             SEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTT-SC
T ss_pred             ceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCC-Ce
Confidence            3569999997   8999999853       0    248999998753     3455553    23457999999995 58


Q ss_pred             EEEEeCC--------------------------------CCeEEEEecCCC-----------eEEEEccCCCCceEEEEe
Q psy950           91 VYWVDAK--------------------------------LDLIQKISYNGG-----------NRQIIRRNLPNPMGIAVH  127 (407)
Q Consensus        91 lYw~d~~--------------------------------~~~I~~~~~dG~-----------~~~~~~~~~~~P~~lav~  127 (407)
                      ||++-..                                .++|.+++.||+           ..+++...+.+|+||+++
T Consensus       157 Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~d  236 (454)
T 1cru_A          157 IYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFT  236 (454)
T ss_dssp             EEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEEC
T ss_pred             EEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEEC
Confidence            9998431                                468999999998           456666788999999999


Q ss_pred             C-CEEEEEeCCCC
Q psy950          128 K-SDVYWVDRNLR  139 (407)
Q Consensus       128 ~-~~lYwtd~~~~  139 (407)
                      . +.||.+|-...
T Consensus       237 p~G~L~~~d~g~~  249 (454)
T 1cru_A          237 PNGKLLQSEQGPN  249 (454)
T ss_dssp             TTSCEEEEEECSS
T ss_pred             CCCCEEEEecCCC
Confidence            6 88999986543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.78  E-value=0.034  Score=54.26  Aligned_cols=234  Identities=7%  Similarity=-0.005  Sum_probs=142.0

Q ss_pred             CeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCC--CeEEEEecCCCeEEEEccCCCCceEEEEeC--CEE
Q psy950           56 PRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKL--DLIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDV  131 (407)
Q Consensus        56 ~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~--~~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~l  131 (407)
                      ..|...+++|.....+... -.....+++.+.+++|+++....  ..|...++.+...+.+........++++.+  .+|
T Consensus       159 ~~i~i~d~~g~~~~~l~~~-~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~l  237 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL  237 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEE-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ceEEEEcCCCCCCEEEeCC-CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEE
Confidence            4899999999887777653 34678999999999999987643  689999998766655543334566777765  567


Q ss_pred             EEEeCCCC--eEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcc
Q psy950          132 YWVDRNLR--TVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLH  209 (407)
Q Consensus       132 Ywtd~~~~--~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~  209 (407)
                      +++....+  .|+..+..+ +.   ...+...                           .+....++             
T Consensus       238 a~~~~~~g~~~i~~~d~~~-~~---~~~l~~~---------------------------~~~~~~~~-------------  273 (415)
T 2hqs_A          238 AFALSKTGSLNLYVMDLAS-GQ---IRQVTDG---------------------------RSNNTEPT-------------  273 (415)
T ss_dssp             EEEECTTSSCEEEEEETTT-CC---EEECCCC---------------------------SSCEEEEE-------------
T ss_pred             EEEEecCCCceEEEEECCC-CC---EEeCcCC---------------------------CCcccceE-------------
Confidence            77754332  466666554 21   1111100                           00000001             


Q ss_pred             eEEecCCCccccCCCCcccccceeeeeecc-c---ceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecC-
Q psy950          210 YKCDCATGTPSASDPKKCTTMDEYLVFSTR-T---EIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRP-  284 (407)
Q Consensus       210 ~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~-~---~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~-  284 (407)
                                +.+|++       +|+++.. .   .|..+.+.......   .......+..+.+.+.+++|+++.... 
T Consensus       274 ----------~spdg~-------~l~~~s~~~g~~~i~~~d~~~~~~~~---l~~~~~~~~~~~~spdG~~l~~~~~~~g  333 (415)
T 2hqs_A          274 ----------WFPDSQ-------NLAFTSDQAGRPQVYKVNINGGAPQR---ITWEGSQNQDADVSSDGKFMVMVSSNGG  333 (415)
T ss_dssp             ----------ECTTSS-------EEEEEECTTSSCEEEEEETTSSCCEE---CCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             ----------ECCCCC-------EEEEEECCCCCcEEEEEECCCCCEEE---EecCCCcccCeEECCCCCEEEEEECcCC
Confidence                      112221       1222221 1   34444444322111   011223456788999999999887652 


Q ss_pred             CceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeCCCCC--eEEEEECCCCcc--cccCCCceeEEEEcCCC
Q psy950          285 WAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIRPWA--KIAWIPTTNPSS--ASSNLTNVVGVEFDYAD  356 (407)
Q Consensus       285 ~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~~~~~--~I~v~~~~~~~r--l~~~l~~P~~iavdp~~  356 (407)
                      ...|+.+++++.....  ... .+..+++.+.++.|+++.... +  .|.++++++...  +...-...+.++..|..
T Consensus       334 ~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~-~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          334 QQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQG-MGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             CEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEET-TEEEEEEEETTSCCEEECCCSSSEEEEEEECCCC
T ss_pred             ceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCC-CccEEEEEECCCCcEEEeeCCCCCCcCCcccccc
Confidence            1578999988765433  223 788999999999999886554 3  799999887642  43344667777777764

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=97.70  E-value=1e-05  Score=75.89  Aligned_cols=41  Identities=32%  Similarity=0.822  Sum_probs=36.4

Q ss_pred             CCCccCCC-cccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          181 NNPCFRTG-NGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       181 ~n~C~~~~-ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      .|+|.. + ||+|+|.|.+..+       +|+|.|+.||.|..|+++|..
T Consensus         2 ~~eC~~-~~~~~C~~~C~~~~~-------~~~C~C~~G~~l~~d~~sC~p   43 (283)
T 3f1s_B            2 KNECHP-ERTDGCQHFCLPGQE-------SYTCSCAQGYRLGEDHKQCVP   43 (283)
T ss_dssp             -CCCCS-SCSSSCSSBCCCCTT-------SCCCBCCTTEEECTTSSCEEE
T ss_pred             CCccCC-CCCCCCCCEeeCCCC-------CeEecCCCCcccCCCCCcccc
Confidence            489987 6 8999999998876       599999999999999999985

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.68  E-value=0.0011  Score=63.11  Aligned_cols=111  Identities=12%  Similarity=-0.002  Sum_probs=80.9

Q ss_pred             CcceEEE---eCCCCEEEE-EEcC-----------CCCeEEEEeCC----CCCeEEEEeC------------CCCCceeE
Q psy950           34 ANTTSPF---SPLPRLLYW-IDYG-----------QYPRIGKSYLD----GSKWTSIVSN------------GISMPRDL   82 (407)
Q Consensus        34 ~P~~iav---dp~~g~lyw-td~~-----------~~~~I~r~~~d----G~~~~~l~~~------------~~~~P~gl   82 (407)
                      +|.||.+   ||. |+|+. ++.+           ....+.+.+++    |.....+--.            ....|+++
T Consensus        64 ~~sGl~~~~~D~~-grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDv  142 (334)
T 2p9w_A           64 QMSGLSLLTHDNS-KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQS  142 (334)
T ss_dssp             EEEEEEESSSSSC-CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEE
T ss_pred             eeeEEEEeccCCC-CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCcee
Confidence            5799999   788 88887 5521           12479999999    4333222100            12348999


Q ss_pred             EEeCCCCeEEEEeCCC-CeEEEEecCCCeEEEEcc------CCCCceEEEEeC--CEEEEEeCCCCeEEEEecC
Q psy950           83 TIDMQTHDVYWVDAKL-DLIQKISYNGGNRQIIRR------NLPNPMGIAVHK--SDVYWVDRNLRTVYKASKL  147 (407)
Q Consensus        83 aiD~~~~~lYw~d~~~-~~I~~~~~dG~~~~~~~~------~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~  147 (407)
                      ++|. .+++|++++.. +.|.+++.||........      ...-|.||++.+  ..|+..+. .++|.+.++.
T Consensus       143 avD~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~  214 (334)
T 2p9w_A          143 AQDR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS  214 (334)
T ss_dssp             EECT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred             EECC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence            9998 68999999999 999999999997665431      123366999984  67888887 8889998865

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.60  E-value=0.014  Score=57.74  Aligned_cols=104  Identities=8%  Similarity=-0.129  Sum_probs=68.1

Q ss_pred             CCCCEEEEEEcCCCCeEEEEeCCCC--CeEE--EE-------eCCCCCceeEEEeCCCCeEEEEeCCC------CeEEEE
Q psy950           42 PLPRLLYWIDYGQYPRIGKSYLDGS--KWTS--IV-------SNGISMPRDLTIDMQTHDVYWVDAKL------DLIQKI  104 (407)
Q Consensus        42 p~~g~lywtd~~~~~~I~r~~~dG~--~~~~--l~-------~~~~~~P~glaiD~~~~~lYw~d~~~------~~I~~~  104 (407)
                      +.+++||.+..++. +|...++.--  ..+.  .+       ..+...|+++.+-+.+  ||++..+.      +.|..+
T Consensus        93 ~~r~~l~v~~l~s~-~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLRSS-RIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBTTTC-CEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccCCCC-eEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEE
Confidence            67899999988874 9999998522  1122  22       1244589999999865  99987655      688888


Q ss_pred             ecCCCeEE-EEc-cCCCC--ceEEEEe--CCEEEEEeCC------------------CCeEEEEecCC
Q psy950          105 SYNGGNRQ-IIR-RNLPN--PMGIAVH--KSDVYWVDRN------------------LRTVYKASKLA  148 (407)
Q Consensus       105 ~~dG~~~~-~~~-~~~~~--P~~lav~--~~~lYwtd~~------------------~~~I~~~~~~~  148 (407)
                      |....... .+. .....  ++++-+.  .+.+|-++|.                  .++|...+...
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~  237 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK  237 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence            87755443 332 22333  3334443  4789999875                  56777777654

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=97.47  E-value=0.09  Score=50.92  Aligned_cols=241  Identities=11%  Similarity=0.064  Sum_probs=149.4

Q ss_pred             CcceEEEeCCCCEEEEEEcC----CCCeEEEEeCCC------CCeEEEE-------eCCCCCceeEEEeCCCCeEEEEeC
Q psy950           34 ANTTSPFSPLPRLLYWIDYG----QYPRIGKSYLDG------SKWTSIV-------SNGISMPRDLTIDMQTHDVYWVDA   96 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~~----~~~~I~r~~~dG------~~~~~l~-------~~~~~~P~glaiD~~~~~lYw~d~   96 (407)
                      -|.||++|...|+||.+=..    ...++-....++      .+...|.       ...+..+.++.+|. .++|.+.|.
T Consensus        27 ~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~-~~rLWVLDt  105 (381)
T 3q6k_A           27 ISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDD-CRRLWVVDI  105 (381)
T ss_dssp             CCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECT-TCEEEEEEC
T ss_pred             ceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcC-CCcEEEEeC
Confidence            38999998667999998643    123566565542      1222211       12466889999998 689999997


Q ss_pred             CC---------------CeEEEEecCCC--eE-EEEc--c----CCCCceEEEEe---------CCEEEEEeCCCCeEEE
Q psy950           97 KL---------------DLIQKISYNGG--NR-QIIR--R----NLPNPMGIAVH---------KSDVYWVDRNLRTVYK  143 (407)
Q Consensus        97 ~~---------------~~I~~~~~dG~--~~-~~~~--~----~~~~P~~lav~---------~~~lYwtd~~~~~I~~  143 (407)
                      +.               -+|..+|+.-.  .. +.+.  .    .......|+|+         ++++|.||.....|..
T Consensus       106 G~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIV  185 (381)
T 3q6k_A          106 GSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFI  185 (381)
T ss_dssp             SSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEE
T ss_pred             CCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEE
Confidence            62               25778888654  32 3322  1    12344678888         4789999998889999


Q ss_pred             EecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCC
Q psy950          144 ASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASD  223 (407)
Q Consensus       144 ~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d  223 (407)
                      .+... +  +...++             |.+-+|.    +  .    +                 .        +  .-+
T Consensus       186 ydl~~-~--~swRv~-------------~~~~~pd----~--~----~-----------------~--------~--~i~  212 (381)
T 3q6k_A          186 YDHKK-Q--DSWNVT-------------HPTFKAE----R--P----T-----------------K--------F--DYG  212 (381)
T ss_dssp             EETTT-T--EEEEEE-------------CGGGSCC----S--C----E-----------------E--------E--EET
T ss_pred             EECCC-C--cEEEEc-------------cCCCccc----c--C----c-----------------c--------e--EEC
Confidence            99876 2  222222             2222221    0  0    0                 0        0  000


Q ss_pred             CCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcC----CCEEEEEEecCCceEEEEeC---CCC
Q psy950          224 PKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYA----DDKILFTQIRPWAKIAWIPT---TNP  296 (407)
Q Consensus       224 ~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~----~~~lywsd~~~~~~I~~~~~---~~~  296 (407)
                      |.      .|.                        .  ...+.+|++++.    ++.|||.-..+ .+++++..   ...
T Consensus       213 G~------~~~------------------------~--~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~  259 (381)
T 3q6k_A          213 GK------EYE------------------------F--KAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQK  259 (381)
T ss_dssp             TE------EEE------------------------E--CCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSST
T ss_pred             CE------EeE------------------------e--ccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCc
Confidence            10      000                        0  012445666665    78999998887 77888762   211


Q ss_pred             c---ccccCCC-----CccEEEEeccCCeEEEEeCCCCCeEEEEECCC-Cc-----c-cc--cCCCceeEEEEcCCCCeE
Q psy950          297 S---SASSNLT-----NVVGVEFDYADDKILFTQIRPWAKIAWIPTTN-PS-----S-AS--SNLTNVVGVEFDYADDKI  359 (407)
Q Consensus       297 ~---~~~~~~~-----~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~-~~-----r-l~--~~l~~P~~iavdp~~g~l  359 (407)
                      .   ....+++     .-.++|+|.-+++||+++-.. +.|.+.+.++ ..     . +.  ..+..|.+|.+|+ .|+|
T Consensus       260 ~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~-~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~-~g~L  337 (381)
T 3q6k_A          260 GGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANT-KQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDS-KGGL  337 (381)
T ss_dssp             TCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSS-SEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECT-TSCE
T ss_pred             chhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccC-CeEEEEeCCCCccccCceEEEEECCCccccCeEEECC-CCeE
Confidence            1   1111221     233688998899999999999 8999999887 32     2 33  3678999999996 6789


Q ss_pred             EEEe
Q psy950          360 LFTQ  363 (407)
Q Consensus       360 ywtd  363 (407)
                      |.+.
T Consensus       338 wv~s  341 (381)
T 3q6k_A          338 WFMS  341 (381)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8886

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.44  E-value=0.016  Score=53.18  Aligned_cols=110  Identities=6%  Similarity=-0.035  Sum_probs=76.4

Q ss_pred             CcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE-E
Q psy950           34 ANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR-Q  112 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~-~  112 (407)
                      .+.+..+.+..++||.++|..+ ++...+.+-.....-+... ..+-||+  +.+++||.+|. .++|..+|...... .
T Consensus        86 ~~FgeGit~~g~~ly~ltw~~~-~v~v~D~~t~~~~~ti~~~-~eG~glt--~dg~~L~~SdG-s~~i~~iDp~T~~v~~  160 (262)
T 3nol_A           86 RYFGEGISDWKDKIVGLTWKNG-LGFVWNIRNLRQVRSFNYD-GEGWGLT--HNDQYLIMSDG-TPVLRFLDPESLTPVR  160 (262)
T ss_dssp             TCCEEEEEEETTEEEEEESSSS-EEEEEETTTCCEEEEEECS-SCCCCEE--ECSSCEEECCS-SSEEEEECTTTCSEEE
T ss_pred             ccceeEEEEeCCEEEEEEeeCC-EEEEEECccCcEEEEEECC-CCceEEe--cCCCEEEEECC-CCeEEEEcCCCCeEEE
Confidence            4555444444789999999875 9999998744433333322 1344555  55799999995 79999999875443 3


Q ss_pred             EEc-c----CCCCceEEEEeCCEEEEEeCCCCeEEEEecCC
Q psy950          113 IIR-R----NLPNPMGIAVHKSDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       113 ~~~-~----~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~  148 (407)
                      .+. .    ....+..|+..+++||...|.++.|.+++..+
T Consensus       161 ~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~t  201 (262)
T 3nol_A          161 TITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPET  201 (262)
T ss_dssp             EEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTT
T ss_pred             EEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCC
Confidence            332 2    22344467888899999999999999999876

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.43  E-value=0.11  Score=51.31  Aligned_cols=98  Identities=8%  Similarity=0.025  Sum_probs=69.3

Q ss_pred             ceEEEEE--EcCCCEEEEEEe-----cCCceEEEEeCCCCc-------------cc-------c---cCCCCccEEEEec
Q psy950          264 NVVGVEF--DYADDKILFTQI-----RPWAKIAWIPTTNPS-------------SA-------S---SNLTNVVGVEFDY  313 (407)
Q Consensus       264 ~~~ald~--d~~~~~lywsd~-----~~~~~I~~~~~~~~~-------------~~-------~---~~~~~~~glAvDw  313 (407)
                      .+..|.|  ++.++++|.+..     .. +.|.++..++..             ..       .   .++..|.+|++..
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Ls-s~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLS-SSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCC-EEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCC-ceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            3444544  889999999988     66 667543332210             00       0   0123789999999


Q ss_pred             cCCeEEEEeCCCCCeEEEEECCCCc--c----cccC-C-------------CceeEEEEcCCCCeEEEEe
Q psy950          314 ADDKILFTQIRPWAKIAWIPTTNPS--S----ASSN-L-------------TNVVGVEFDYADDKILFTQ  363 (407)
Q Consensus       314 i~~~LYwtd~~~~~~I~v~~~~~~~--r----l~~~-l-------------~~P~~iavdp~~g~lywtd  363 (407)
                      -++.||.++.+. ++|.+++.++..  +    +..+ .             ..|++++++|-..+||+++
T Consensus       331 DGrfLYVSnrg~-d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          331 DDKFLYLSLWGI-GEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TSCEEEEEETTT-TEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCEEEEEeCCC-CEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999999999999 999999985332  2    1122 1             1599999999999999998

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.40  E-value=0.055  Score=51.30  Aligned_cols=110  Identities=8%  Similarity=-0.022  Sum_probs=69.6

Q ss_pred             CCCCCCccEEEEEEeeeeecCCcceEEEcCCCCCcce-----EEEeCCCCEEEEEEc-CCCCeEEEEeCCCCCeEEEEeC
Q psy950            1 MGSTLALASLIWAIRLALRLLKKKKKLKTSFRSANTT-----SPFSPLPRLLYWIDY-GQYPRIGKSYLDGSKWTSIVSN   74 (407)
Q Consensus         1 ~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~P~~-----iavdp~~g~lywtd~-~~~~~I~r~~~dG~~~~~l~~~   74 (407)
                      +|+..+.++.+|.   ....|...+.+ +..-.....     .++.|...+|+++.. +....|...++++...+.+...
T Consensus         3 ~~~~~~~~~~~~~---~~~~g~~~~~l-t~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~   78 (388)
T 3pe7_A            3 KGKQIPLTFDTYQ---DASTGAQVTRL-TPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG   78 (388)
T ss_dssp             TTCEEECCCEEEE---CTTTCCEEEEC-SCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS
T ss_pred             ccccCcccceEEe---cCCCCcceEEe-cCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC
Confidence            4566666677764   22333333332 222222333     678899888888765 3334799999998776665543


Q ss_pred             CCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc
Q psy950           75 GISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR  115 (407)
Q Consensus        75 ~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~  115 (407)
                      ......++++.+.+++|+++... ..|...++++...+.+.
T Consensus        79 ~~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~g~~~~~~  118 (388)
T 3pe7_A           79 RGDNTFGGFLSPDDDALFYVKDG-RNLMRVDLATLEENVVY  118 (388)
T ss_dssp             SCBCSSSCEECTTSSEEEEEETT-TEEEEEETTTCCEEEEE
T ss_pred             CCCCccceEEcCCCCEEEEEeCC-CeEEEEECCCCcceeee
Confidence            22222367899999999999853 58999999877665443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=97.32  E-value=0.21  Score=52.00  Aligned_cols=111  Identities=5%  Similarity=-0.024  Sum_probs=79.7

Q ss_pred             CcceEEEeCCCCEEEEEEc-CC---CCeEEEEeCCCCCeEEEEeCCCC------------------------CceeEEEe
Q psy950           34 ANTTSPFSPLPRLLYWIDY-GQ---YPRIGKSYLDGSKWTSIVSNGIS------------------------MPRDLTID   85 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~-~~---~~~I~r~~~dG~~~~~l~~~~~~------------------------~P~glaiD   85 (407)
                      .+.++++.|...+|+++.. ..   ...|...++++...+.+......                        ....+++.
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S  117 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS  117 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence            4789999999999998876 22   13799999987776666642211                        25789999


Q ss_pred             CCCCeEEEEeCCCCeEEEEecCCC---eEEEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCC
Q psy950           86 MQTHDVYWVDAKLDLIQKISYNGG---NRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus        86 ~~~~~lYw~d~~~~~I~~~~~dG~---~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~  148 (407)
                      +.+++|+++..  +.|...++++.   ..+.+......+..+++..  .+|+++..  +.|+..+..+
T Consensus       118 pDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~--~~i~~~d~~~  181 (741)
T 2ecf_A          118 PDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG--RNLWVIDLAS  181 (741)
T ss_dssp             TTSSEEEEEET--TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET--TEEEEEETTT
T ss_pred             CCCCEEEEEeC--CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC--CcEEEEecCC
Confidence            99999999886  89999999877   5544443344567777755  56777653  4677777665

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.20  E-value=0.1  Score=51.95  Aligned_cols=102  Identities=12%  Similarity=0.113  Sum_probs=72.7

Q ss_pred             CcceEEEeCC---CCEEEEEEcCC-----------CCeEEEEeCCCC--------CeEEEEe----CCCCCceeEEEeCC
Q psy950           34 ANTTSPFSPL---PRLLYWIDYGQ-----------YPRIGKSYLDGS--------KWTSIVS----NGISMPRDLTIDMQ   87 (407)
Q Consensus        34 ~P~~iavdp~---~g~lywtd~~~-----------~~~I~r~~~dG~--------~~~~l~~----~~~~~P~glaiD~~   87 (407)
                      -+.+||++|.   +++||++-...           ..+|.|..++..        ..++|+.    ........|++++.
T Consensus        70 Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpD  149 (463)
T 2wg3_C           70 GLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPD  149 (463)
T ss_dssp             SEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTT
T ss_pred             cceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCC
Confidence            4789999996   78888875321           138888888531        2455553    12345678999994


Q ss_pred             CCeEEEEeC-----------------CCCeEEEEecCCC--------------------eEEEEccCCCCceEEEEeCC-
Q psy950           88 THDVYWVDA-----------------KLDLIQKISYNGG--------------------NRQIIRRNLPNPMGIAVHKS-  129 (407)
Q Consensus        88 ~~~lYw~d~-----------------~~~~I~~~~~dG~--------------------~~~~~~~~~~~P~~lav~~~-  129 (407)
                       ++||++-.                 ..+.|.+++.||.                    ..++....+.+|+|++++.. 
T Consensus       150 -G~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~t  228 (463)
T 2wg3_C          150 -GFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHP  228 (463)
T ss_dssp             -SCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSC
T ss_pred             -CcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCC
Confidence             69999832                 1467999999994                    23566678999999999974 


Q ss_pred             -------EEEEEeC
Q psy950          130 -------DVYWVDR  136 (407)
Q Consensus       130 -------~lYwtd~  136 (407)
                             ++|.+|.
T Consensus       229 g~~~G~l~~~~~D~  242 (463)
T 2wg3_C          229 TDININLTILCSDS  242 (463)
T ss_dssp             SSTTCSEEEEEECC
T ss_pred             CCcccceEEEeccc
Confidence                   6777874

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.14  E-value=0.024  Score=54.30  Aligned_cols=115  Identities=13%  Similarity=0.042  Sum_probs=79.9

Q ss_pred             CCCCCcceEEE--eCCCC--EEEEEEcCCCCeEEEEeC----CCCCeEEEEeC-C-CCCceeEEEeCCCCeEEEEeCCCC
Q psy950           30 SFRSANTTSPF--SPLPR--LLYWIDYGQYPRIGKSYL----DGSKWTSIVSN-G-ISMPRDLTIDMQTHDVYWVDAKLD   99 (407)
Q Consensus        30 ~~~~~P~~iav--dp~~g--~lywtd~~~~~~I~r~~~----dG~~~~~l~~~-~-~~~P~glaiD~~~~~lYw~d~~~~   99 (407)
                      ..+..|.|||+  +|..+  ++|.++..  .+++...+    +|.-...++.+ . -..|+|+++|..+++||..+...+
T Consensus       125 t~~~~pyGlcly~~~~~g~~yafV~~k~--G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~G  202 (355)
T 3amr_A          125 TAINEVYGFTLYHSQKTGKYYAMVTGKE--GEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEA  202 (355)
T ss_dssp             CCCSSCCCEEEEECTTTCCEEEEEECSS--SEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTE
T ss_pred             CCCCCeeEEEEEecCCCCcEEEEEECCC--CeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccce
Confidence            34578999999  99877  57776654  46766554    33233333331 1 247999999999999999999855


Q ss_pred             eEEEEecCCC---eEEEEc----cCC-CCceEEEEe-C----CEEEEEeCCCCeEEEEecC
Q psy950          100 LIQKISYNGG---NRQIIR----RNL-PNPMGIAVH-K----SDVYWVDRNLRTVYKASKL  147 (407)
Q Consensus       100 ~I~~~~~dG~---~~~~~~----~~~-~~P~~lav~-~----~~lYwtd~~~~~I~~~~~~  147 (407)
                       |++++.+..   ..+.+.    ..+ ..|.||+++ .    ++|+.++...++....+..
T Consensus       203 -Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          203 -IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             -EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             -EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence             999997632   233332    233 389999996 2    4899999888877767665

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=97.13  E-value=0.00023  Score=57.01  Aligned_cols=40  Identities=30%  Similarity=0.670  Sum_probs=35.7

Q ss_pred             CCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       182 n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      ++|.. ++++|+|.|++..+       +|+|.|+.||.+..++++|..
T Consensus        55 ~~C~~-~~~~C~~~C~n~~g-------~y~C~C~~G~~~~~~g~~C~~   94 (114)
T 1aut_L           55 LNCSL-DNGGCTHYCLEEVG-------WRRCSCAPGYKLGDDLLQCHP   94 (114)
T ss_dssp             SSSSS-GGGGCSSEEEECSS-------SEEEECCTTEEECTTSSCEEE
T ss_pred             CcCcC-CCCCCCCEeECCCC-------CEEeECCCCeeECCCCCccCc
Confidence            57986 78999999999876       599999999999999999974

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=97.06  E-value=0.00028  Score=60.75  Aligned_cols=41  Identities=20%  Similarity=0.581  Sum_probs=35.0

Q ss_pred             CCCccCCCccc---ccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          181 NNPCFRTGNGG---CEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       181 ~n~C~~~~ng~---Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      .++|.. ++++   |+|.|.+.++       +|.|.|+.||.|..|+++|..
T Consensus       124 i~eC~~-~~~~~~~C~~~C~n~~g-------~~~C~C~~Gy~l~~d~~~C~~  167 (170)
T 1szb_A          124 IDECQV-APGEAPTCDHHCHNHLG-------GFYCSCRAGYVLHRNKRTCSE  167 (170)
T ss_dssp             CCTTCC-CTTSCCSSSSEEEEETT-------EEEEECCTTEEECTTSSCEEE
T ss_pred             cCcccC-CCCCCCccCCccccCCC-------CEEEeCCCCcEECCCCCcccc
Confidence            478986 5555   9999999887       699999999999999999963

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.97  E-value=0.0086  Score=59.87  Aligned_cols=148  Identities=9%  Similarity=-0.020  Sum_probs=94.2

Q ss_pred             CcceEEEcCCCCCcceEEEeCCC-CEEEEEEcCCCCeEEEEeCCCCCe-EEEE------eCC-----CCCceeEEEeCC-
Q psy950           22 KKKKKLKTSFRSANTTSPFSPLP-RLLYWIDYGQYPRIGKSYLDGSKW-TSIV------SNG-----ISMPRDLTIDMQ-   87 (407)
Q Consensus        22 ~~~~~l~~~~~~~P~~iavdp~~-g~lywtd~~~~~~I~r~~~dG~~~-~~l~------~~~-----~~~P~glaiD~~-   87 (407)
                      +.+..++..+|+.|++||+.|.. ++||.++..  .+|.+.+.+|... +.+.      ..+     ..-+-|||+++. 
T Consensus         3 gf~v~~va~gL~~P~~~a~~pdG~~rl~V~er~--G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f   80 (463)
T 2wg3_C            3 CFCIQEVVSGLRQPVGALHSGDGSQRLFILEKE--GYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNY   80 (463)
T ss_dssp             CEEEEEEEEEESSEEEEECCSSSSCCEEEEETT--TEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTH
T ss_pred             ceEEEEeccCCCCceEEEECCCCCeEEEEEeCC--ceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCC
Confidence            34456677789999999999986 379999875  5899988777531 1111      111     234678999985 


Q ss_pred             --CCeEEEEeCCC------------CeEEEEecCCC--------eEEEEc----cCCCC-ceEEEEeC-CEEEEEeCC--
Q psy950           88 --THDVYWVDAKL------------DLIQKISYNGG--------NRQIIR----RNLPN-PMGIAVHK-SDVYWVDRN--  137 (407)
Q Consensus        88 --~~~lYw~d~~~------------~~I~~~~~dG~--------~~~~~~----~~~~~-P~~lav~~-~~lYwtd~~--  137 (407)
                        ++.||++....            .+|.+..++..        ..+++.    ....| --.|++.. ++||++-..  
T Consensus        81 ~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           81 KKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             HHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             cCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence              68999986421            37777777531        223433    12223 34566655 799999432  


Q ss_pred             ---------------CCeEEEEecCCCC----------C------CcccEEcccCCCCceeeEEe
Q psy950          138 ---------------LRTVYKASKLAST----------N------ITLPTPIRTGLSGLRDIAIF  171 (407)
Q Consensus       138 ---------------~~~I~~~~~~~~g----------~------~~~~~~i~~~~~~p~~i~i~  171 (407)
                                     .++|.|++.++.+          +      ....++.+.++..|.++++.
T Consensus       161 ~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~d  225 (463)
T 2wg3_C          161 ITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVD  225 (463)
T ss_dssp             CCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEE
T ss_pred             CCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEEC
Confidence                           3479999988610          0      01245666677777777654

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=96.89  E-value=0.0005  Score=58.28  Aligned_cols=42  Identities=24%  Similarity=0.473  Sum_probs=34.7

Q ss_pred             CCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      .++|....++.|+|.|.+.++       ++.|.|+.||.|..|+++|..
T Consensus       117 ~~eC~~~~~~~C~~~C~n~~g-------~~~C~C~~Gy~l~~~~~~C~~  158 (159)
T 1nzi_A          117 INECTDFVDVPCSHFCNNFIG-------GYFCSCPPEYFLHDDMKNCGV  158 (159)
T ss_dssp             CCTTTC-CCCCSSSEEEEETT-------EEEEECCTTCEECTTSSCEEC
T ss_pred             CcccCCCCCCCCCCcccCcCC-------CEEEecCCCcEECCCCCcccc
Confidence            468875235789999999876       699999999999999999963

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=96.88  E-value=0.00047  Score=54.60  Aligned_cols=41  Identities=29%  Similarity=0.831  Sum_probs=34.4

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      ..|||.. ++++|++.|++.++       +|.|.|+.||.+. +++.|.+
T Consensus        28 d~neC~~-~~~~C~~~C~n~~g-------~y~C~C~~Gy~g~-~g~~C~d   68 (107)
T 2w2n_E           28 GTNECLD-NNGGCSYVCNDLKI-------GYECLCPDGFQLV-AQRRCED   68 (107)
T ss_dssp             SCCGGGT-GGGGCSSEEECCSB-------SCEEECCTTCEEE-TTTEEEC
T ss_pred             cCccCcC-CCCCCCCEeEeCCC-------CeEEECCCCcccc-CCCcccc
Confidence            5789987 67999999999876       5999999999864 6788864

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=96.83  E-value=0.021  Score=55.39  Aligned_cols=104  Identities=10%  Similarity=0.132  Sum_probs=79.6

Q ss_pred             CCcceEEEeCC----CCEEEEEEcCCCCeEEEEeC----C---CCCeEEEEeCC-CCCceeEEEeCCCCeEEEEeCCCCe
Q psy950           33 SANTTSPFSPL----PRLLYWIDYGQYPRIGKSYL----D---GSKWTSIVSNG-ISMPRDLTIDMQTHDVYWVDAKLDL  100 (407)
Q Consensus        33 ~~P~~iavdp~----~g~lywtd~~~~~~I~r~~~----d---G~~~~~l~~~~-~~~P~glaiD~~~~~lYw~d~~~~~  100 (407)
                      +.-.|||+.|.    .+.|||.-..+. +++++..    |   ....+.+-..+ .....++++|..++.||+++...+.
T Consensus       220 ~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~a  298 (381)
T 3q6k_A          220 AGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQ  298 (381)
T ss_dssp             CCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSE
T ss_pred             cCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCe
Confidence            34689999998    789999998764 8888873    2   23345555543 2345578999779999999999999


Q ss_pred             EEEEecCC-----CeEEEEc--cCCCCceEEEEeC-CEEEEEeCC
Q psy950          101 IQKISYNG-----GNRQIIR--RNLPNPMGIAVHK-SDVYWVDRN  137 (407)
Q Consensus       101 I~~~~~dG-----~~~~~~~--~~~~~P~~lav~~-~~lYwtd~~  137 (407)
                      |.+.+.++     .+..++.  ..+..|-++++.. ++||.+.-+
T Consensus       299 I~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          299 VSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             EEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECS
T ss_pred             EEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEECc
Confidence            99999988     4556655  5678999999964 889998644

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=96.66  E-value=0.53  Score=45.63  Aligned_cols=132  Identities=9%  Similarity=0.017  Sum_probs=87.9

Q ss_pred             eeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCC-CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEE
Q psy950           15 RLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQ-YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~-~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw   93 (407)
                      ++...++...+.+.. .-....++++.|...+|+++.... ...|...++++.....+.. .-.....++..+.+++|++
T Consensus       162 ~i~d~~g~~~~~l~~-~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~-~~~~~~~~~~spdg~~la~  239 (415)
T 2hqs_A          162 RVSDYDGYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPRHNGAPAFSPDGSKLAF  239 (415)
T ss_dssp             EEEETTSCSCEEEEE-ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC-CSSCEEEEEECTTSSEEEE
T ss_pred             EEEcCCCCCCEEEeC-CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec-CCCcccCEEEcCCCCEEEE
Confidence            334445554444443 334578999999999999987642 3589999998766665543 2346789999999999998


Q ss_pred             EeCC--CCeEEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCCC--eEEEEecCC
Q psy950           94 VDAK--LDLIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLR--TVYKASKLA  148 (407)
Q Consensus        94 ~d~~--~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~--~I~~~~~~~  148 (407)
                      +-..  ...|...++.+...+.+.........+++.+  .+|+++....+  .|+..+..+
T Consensus       240 ~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~  300 (415)
T 2hqs_A          240 ALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  300 (415)
T ss_dssp             EECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             EEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence            7654  4469999998766655443334456677754  46776654322  566666554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.64  E-value=0.41  Score=45.75  Aligned_cols=73  Identities=11%  Similarity=0.094  Sum_probs=54.6

Q ss_pred             CcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCc-----ccc-----cCCCCccEEEEeccC---CeEEEEeCCCCCe
Q psy950          262 LTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS-----SAS-----SNLTNVVGVEFDYAD---DKILFTQIRPWAK  328 (407)
Q Consensus       262 ~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~-----~~~-----~~~~~~~glAvDwi~---~~LYwtd~~~~~~  328 (407)
                      ...+.++.+|...++||+.+... + |.+++.+...     .+.     .+...+||||+..-.   +.|+.++++. ++
T Consensus       179 gsq~EgcvvDd~~g~Lyv~eEd~-G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~-~s  255 (355)
T 3amr_A          179 NSQTEGMAADDEYGRLYIAEEDE-A-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN-SS  255 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTT-E-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG-TE
T ss_pred             CCCcceEEEcCCCCeEEEecccc-e-EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC-CE
Confidence            34677899999999999999886 6 9998865221     111     333479999996544   4799999998 88


Q ss_pred             EEEEECCCC
Q psy950          329 IAWIPTTNP  337 (407)
Q Consensus       329 I~v~~~~~~  337 (407)
                      ..+.+..+.
T Consensus       256 ~~Vydr~~~  264 (355)
T 3amr_A          256 YAIYDRQGK  264 (355)
T ss_dssp             EEEEESSTT
T ss_pred             EEEEECCCC
Confidence            989888643

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.64  E-value=0.0069  Score=59.04  Aligned_cols=97  Identities=8%  Similarity=-0.059  Sum_probs=72.8

Q ss_pred             EcCCCEEEEEEec----CCceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeC---------CCCCeEEEEECC
Q psy950          271 DYADDKILFTQIR----PWAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQI---------RPWAKIAWIPTT  335 (407)
Q Consensus       271 d~~~~~lywsd~~----~~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~---------~~~~~I~v~~~~  335 (407)
                      .+..+++|++|..    . +.++.++......+.  ..+..| +|++++-++.||.++.         .. +.|.+++..
T Consensus        41 ~pd~~~vyV~~~~~~~~~-~~V~ViD~~t~~v~~~I~vG~~P-~va~spDG~~lyVan~~~~r~~~G~~~-~~VsviD~~  117 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAV-TQQFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERT-DYVEVFDPV  117 (386)
T ss_dssp             CCCTTEEEEEECGGGCSS-EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEE-EEEEEECTT
T ss_pred             CCCCCEEEEEcCcccCCC-CEEEEEECCCCeEEEEEECCCCC-cEEECCCCCEEEEEcccccccccCCCC-CEEEEEECC
Confidence            4678999999986    5 789999988765543  444466 5999999999999984         23 579999988


Q ss_pred             CCcc---cccC-------CCceeEEEEcCCCCeEEEEeCCCCCcc
Q psy950          336 NPSS---ASSN-------LTNVVGVEFDYADDKILFTQIRPWAKI  370 (407)
Q Consensus       336 ~~~r---l~~~-------l~~P~~iavdp~~g~lywtd~~~~~~i  370 (407)
                      ....   +.-.       ...|++++++|-..+||.++......+
T Consensus       118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V  162 (386)
T 3sjl_D          118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV  162 (386)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred             CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence            7653   2111       248999999999999999986433333

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.58  E-value=0.038  Score=56.56  Aligned_cols=114  Identities=11%  Similarity=-0.014  Sum_probs=82.4

Q ss_pred             CcceEEEeCCCCEEEEEEcCCCC-------------eEE---------------------EEeCCCCC----e-EEEEeC
Q psy950           34 ANTTSPFSPLPRLLYWIDYGQYP-------------RIG---------------------KSYLDGSK----W-TSIVSN   74 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~~~~~-------------~I~---------------------r~~~dG~~----~-~~l~~~   74 (407)
                      +|.+++++|..+++|.|...++.             .|.                     ..-+|+..    . ...+..
T Consensus       196 ~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv  275 (595)
T 1fwx_A          196 NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI  275 (595)
T ss_dssp             CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE
T ss_pred             CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec
Confidence            79999999999999999976421             111                     11122222    1 112221


Q ss_pred             CCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCe------------EEEEccCCCCceEEEEeC-CEEEEEeCCCCeE
Q psy950           75 GISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN------------RQIIRRNLPNPMGIAVHK-SDVYWVDRNLRTV  141 (407)
Q Consensus        75 ~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~------------~~~~~~~~~~P~~lav~~-~~lYwtd~~~~~I  141 (407)
                      + ..|+|+++.+.++++|.++...++|.+++++-..            ...-......|.++++++ +++|.+..-.+.|
T Consensus       276 g-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV  354 (595)
T 1fwx_A          276 A-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQV  354 (595)
T ss_dssp             E-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEE
T ss_pred             C-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcE
Confidence            2 3799999999999999999999999999998431            111125567899999987 7999999999988


Q ss_pred             EEEecCC
Q psy950          142 YKASKLA  148 (407)
Q Consensus       142 ~~~~~~~  148 (407)
                      .+.+...
T Consensus       355 ~kwdi~~  361 (595)
T 1fwx_A          355 VKWNIED  361 (595)
T ss_dssp             EEEEHHH
T ss_pred             EEEEhhH
Confidence            8877653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.57  E-value=0.37  Score=42.78  Aligned_cols=112  Identities=11%  Similarity=0.005  Sum_probs=75.7

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCC-CCeEEEEeCC-CCCceeEEEeCCCCeEEEEeCC---CCeEEEEec
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDG-SKWTSIVSNG-ISMPRDLTIDMQTHDVYWVDAK---LDLIQKISY  106 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG-~~~~~l~~~~-~~~P~glaiD~~~~~lYw~d~~---~~~I~~~~~  106 (407)
                      -....++++.|...+|+++..   ..|...++++ .....+.... ...+..+++.+.++.|+++...   ...|..++.
T Consensus        41 ~~~v~~~~~spdg~~l~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~  117 (297)
T 2ojh_A           41 PELFEAPNWSPDGKYLLLNSE---GLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS  117 (297)
T ss_dssp             SSCCEEEEECTTSSEEEEEET---TEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred             CcceEeeEECCCCCEEEEEcC---CeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence            345789999999888888752   4899999988 6655544322 2456789999999999998743   578999988


Q ss_pred             CCCeEEEEccCCCCceEEEEeC--CEEEEEeCCCC--eEEEEecC
Q psy950          107 NGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLR--TVYKASKL  147 (407)
Q Consensus       107 dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~--~I~~~~~~  147 (407)
                      ++...+.+.. ......+++..  ..|+++....+  .|+.++..
T Consensus       118 ~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~  161 (297)
T 2ojh_A          118 TGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID  161 (297)
T ss_dssp             TCCCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             CCCceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence            8766554432 22366667754  56766554434  44444443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=96.57  E-value=0.31  Score=49.25  Aligned_cols=254  Identities=8%  Similarity=-0.056  Sum_probs=132.4

Q ss_pred             cceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC----CCCeEEEEec--CC
Q psy950           35 NTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA----KLDLIQKISY--NG  108 (407)
Q Consensus        35 P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~----~~~~I~~~~~--dG  108 (407)
                      ..++++.|...+|.++.... ..+....++|...+.+..........++..+. +.||+++.    ....|..++.  +|
T Consensus        24 ~~~~~~~~DG~~la~~s~~~-g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g  101 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSE-GSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG  101 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEET-TEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred             hheeecCCCCCeEEEEEccC-CceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC
Confidence            47889999988898876522 24444446777665554332234556666665 77888886    2236888998  88


Q ss_pred             CeEEEEccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCC
Q psy950          109 GNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTG  188 (407)
Q Consensus       109 ~~~~~~~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~  188 (407)
                      ...++.........+++.+++.++++....+.+...+..+ +   ....+..           +    +  .     .  
T Consensus       102 ~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~-g---~~~~l~~-----------~----~--~-----~--  153 (582)
T 3o4h_A          102 EEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDG-G---GLRELAR-----------L----P--G-----F--  153 (582)
T ss_dssp             CCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEET-T---EEEEEEE-----------E----S--S-----C--
T ss_pred             ccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccC-C---cEEEeec-----------C----C--C-----c--
Confidence            7763322222222344555655555433333222333333 1   1111100           0    0  0     0  


Q ss_pred             cccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecc-----cceEEeecCCCCCeeeeEeecCCc
Q psy950          189 NGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTR-----TEIRALHLDPTLTAVPFKTVSNLT  263 (407)
Q Consensus       189 ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~-----~~I~~i~l~~~~~~~~~~~~~~~~  263 (407)
                                          .        ..+.+||+       +|+++..     ..|..+.+...... .  ......
T Consensus       154 --------------------~--------~~~spDG~-------~la~~~~~~~~~~~i~~~d~~~g~~~-~--l~~~~~  195 (582)
T 3o4h_A          154 --------------------G--------FVSDIRGD-------LIAGLGFFGGGRVSLFTSNLSSGGLR-V--FDSGEG  195 (582)
T ss_dssp             --------------------E--------EEEEEETT-------EEEEEEEEETTEEEEEEEETTTCCCE-E--ECCSSC
T ss_pred             --------------------e--------EEECCCCC-------EEEEEEEcCCCCeEEEEEcCCCCCce-E--eecCCC
Confidence                                0        00122332       1222211     23555555443221 1  112223


Q ss_pred             ceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--cCCCCccEEE--------EeccCCeEEEEeCCCCCeEEEEE
Q psy950          264 NVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SNLTNVVGVE--------FDYADDKILFTQIRPWAKIAWIP  333 (407)
Q Consensus       264 ~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~~~~~glA--------vDwi~~~LYwtd~~~~~~I~v~~  333 (407)
                      ....+.+.+.++.|+.++......|+..++++.....  +....+.+++        +.+-+ .||++-... +++.+..
T Consensus       196 ~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~-g~~~l~~  273 (582)
T 3o4h_A          196 SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARRE-GRSAVFI  273 (582)
T ss_dssp             EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEET-TEEEEEE
T ss_pred             ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCC-cEEEEEEcC-CcEEEEE
Confidence            4567889999999994443322379999988765432  2211344555        88888 788877766 6777777


Q ss_pred             CCCCcccccCCCceeEEEEcCCCCeEEEE
Q psy950          334 TTNPSSASSNLTNVVGVEFDYADDKILFT  362 (407)
Q Consensus       334 ~~~~~rl~~~l~~P~~iavdp~~g~lywt  362 (407)
                      + |... ........++++.  .|.++++
T Consensus       274 ~-g~~~-~~~~~~v~~~~~s--dg~~l~~  298 (582)
T 3o4h_A          274 D-GERV-EAPQGNHGRVVLW--RGKLVTS  298 (582)
T ss_dssp             T-TEEE-CCCSSEEEEEEEE--TTEEEEE
T ss_pred             E-CCee-ccCCCceEEEEec--CCEEEEE
Confidence            7 4321 1111345677777  5666554

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=96.53  E-value=0.00084  Score=56.27  Aligned_cols=41  Identities=34%  Similarity=0.712  Sum_probs=35.5

Q ss_pred             CCCccCCCcccccccc-eecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          181 NNPCFRTGNGGCEQLC-FSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC-~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      .++|.. ++++|.+.| ++.++       +|+|.|+.||.|..|+++|..
T Consensus        85 ~deC~~-~~~~C~~~C~~n~~g-------~y~C~C~~Gy~l~~dG~~C~~  126 (146)
T 1x7a_L           85 DATCNI-KNGRCKQFCKTGADS-------KVLCSCTTGYRLAPDQKSCKP  126 (146)
T ss_dssp             ECCTTS-GGGSCSSBCCCCSSS-------CCCCBCCTTEEECTTSSSEEE
T ss_pred             CccccC-CCCCCcCCCCCCCCC-------CEEeEcCCCcEeCCCCCcCCC
Confidence            478986 678999999 88766       699999999999999999974

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=96.52  E-value=0.001  Score=58.47  Aligned_cols=40  Identities=33%  Similarity=0.698  Sum_probs=35.7

Q ss_pred             CCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       182 n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      ++|.. ++++|.+.|++.++       +|+|.|+.||.|..|+++|..
T Consensus        82 deC~~-~~~~C~~~C~n~~g-------sy~C~C~~Gy~l~~dG~~C~~  121 (195)
T 1nfu_B           82 KLCSL-DNGDCDQFCHEEQN-------SVVCSCARGYTLADNGKACIP  121 (195)
T ss_dssp             CGGGT-GGGGCSSEEEEETT-------EEEEECCTTEEECTTSSCEEE
T ss_pred             ccccC-CCCCCCCEeECCCC-------CeEEECCCCceeCCCCCcccc
Confidence            78987 67899999999876       699999999999999999984

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=96.42  E-value=0.0013  Score=54.21  Aligned_cols=40  Identities=33%  Similarity=0.698  Sum_probs=35.2

Q ss_pred             CCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       182 n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      ++|.. ++++|.+.|++.++       +|+|.|+.||.|..|+++|..
T Consensus        82 d~C~~-~~~~C~~~C~~~~g-------~y~C~C~~Gy~l~~~g~~C~~  121 (134)
T 2vh0_B           82 KLCSL-DNGDCDQFCHEEQN-------SVVCSCARGYTLADNGKACIP  121 (134)
T ss_dssp             CGGGT-GGGGCSSEEEEETT-------EEEEECCTTEEECTTSSCEEE
T ss_pred             Ccccc-CCCCCCCEeECCCC-------CEEEECCCCcEECCCCCccCc
Confidence            77976 67899999999876       699999999999999999974

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=96.35  E-value=0.0017  Score=54.10  Aligned_cols=36  Identities=36%  Similarity=0.712  Sum_probs=31.5

Q ss_pred             CcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          188 GNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       188 ~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      .+++|+|.|++.++.      +|+|.|+.||.|..|+++|..
T Consensus        94 ~~~~C~~~C~~~~g~------~y~C~C~~Gy~l~~dG~~C~~  129 (142)
T 2c4f_L           94 ENGGCEQYCSDHTGT------KRSCRCHEGYSLLADGVSCTP  129 (142)
T ss_dssp             GGGGCSSEEECCTTS------CCEEECCTTEEECTTSSCEEE
T ss_pred             CCCCccCEeECCCCC------CEEEECCCCceECCCCCCCCC
Confidence            579999999988762      599999999999999999974

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=96.35  E-value=0.0012  Score=49.84  Aligned_cols=41  Identities=22%  Similarity=0.626  Sum_probs=33.1

Q ss_pred             CCCCccCCCccccc-ccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          180 ENNPCFRTGNGGCE-QLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs-~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      ..++|.. +...|. +.|++.++       +|+|.|+.||.+.+|+++|+
T Consensus        45 dideC~~-~~~~C~~~~C~n~~g-------~y~C~C~~G~~~~~~~~~Ci   86 (86)
T 1lmj_A           45 DIDECQR-DPLLCRGGVCHNTEG-------SYRCECPPGHQLSPNISACI   86 (86)
T ss_dssp             ECCHHHH-CSSTTTTSEEEEETT-------EEEEESCTTSCCCSSSCCCC
T ss_pred             CcccccC-CCCcCCCCEeEcCCC-------CEEEECcCCcccCCCCCccC
Confidence            3577865 445676 68999876       69999999999999999884

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=96.15  E-value=0.00089  Score=52.97  Aligned_cols=40  Identities=30%  Similarity=0.716  Sum_probs=0.5

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      ..++|..  .+.|++.|++.++       +|+|.|+.||.+.+|+++|+
T Consensus        68 dideC~~--~~~C~~~C~n~~g-------sy~C~C~~Gy~~~~d~~~C~  107 (107)
T 2w2n_E           68 DIDECQD--PDTCSQLCVNLEG-------GYKCQCEEGFQLDPHTKACK  107 (107)
T ss_dssp             C------------------------------------------------
T ss_pred             cccccCC--CCCcCCeeecCCC-------CEEEECCCCceECCCCCccC
Confidence            4678863  4689999999876       69999999999999999884

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=95.83  E-value=0.0042  Score=46.96  Aligned_cols=41  Identities=22%  Similarity=0.596  Sum_probs=33.0

Q ss_pred             CCCccCCCcccc-cccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          181 NNPCFRTGNGGC-EQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       181 ~n~C~~~~ng~C-s~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      .++|.. +...| .+.|++.++       +|+|.|+.||.+.++++.|..
T Consensus         3 ideC~~-~~~~C~~~~C~n~~g-------~y~C~C~~G~~~~~~g~~C~d   44 (87)
T 1z6c_A            3 VDECSL-KPSICGTAVCKNIPG-------DFECECPEGYRYNLKSKSCED   44 (87)
T ss_dssp             SCSSSS-SSSSBTTSSCCCBTT-------BCCCSSSTTCEEETTTTEEEC
T ss_pred             cccccC-CCCCCCCCEeECCCC-------CEEEECCCCceECCCCCcCCC
Confidence            578876 44457 568998876       699999999999888999974

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=95.81  E-value=2.1  Score=44.09  Aligned_cols=69  Identities=9%  Similarity=-0.117  Sum_probs=52.5

Q ss_pred             CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCC
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNG  108 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG  108 (407)
                      ..+.++++.|. +++.++..   ..|...++++.....+.. .-..+..+++.+.+++|+++.  .+.|...++++
T Consensus        82 ~~v~~~~~spd-~~~~~~~~---~~i~~~d~~~~~~~~l~~-~~~~~~~~~~SpdG~~la~~~--~~~i~v~~~~~  150 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFTQ---GGLVGFDMLARKVTYLFD-TNEETASLDFSPVGDRVAYVR--NHNLYIARGGK  150 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEET---TEEEEEETTTTEEEEEEC-CTTCCTTCEECTTSSEEEEEE--TTEEEEEECBC
T ss_pred             cCceeEEECCC-CeEEEEEC---CEEEEEECCCCceEEccC-CcccccCCcCCCCCCEEEEEE--CCeEEEEecCc
Confidence            45789999999 88777742   489999998766555543 234577889999999988874  47899999876

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=95.62  E-value=0.0046  Score=52.49  Aligned_cols=41  Identities=24%  Similarity=0.577  Sum_probs=34.3

Q ss_pred             CCCCccCCCcccccc-cceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          180 ENNPCFRTGNGGCEQ-LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~-lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      ..++|.. +.+.|.+ .|++.++       +|+|.|+.||.+..|+++|.
T Consensus       121 dideC~~-~~~~C~~g~C~n~~g-------sy~C~C~~Gy~g~~d~~~C~  162 (162)
T 1uzk_A          121 DIDECQE-LPGLCQGGKCINTFG-------SFQCRCPTGYYLNEDTRVCD  162 (162)
T ss_dssp             ECCHHHH-CGGGGBTSEEEECSS-------CEEEECCTTCCBCTTTCBBC
T ss_pred             ccccccC-CCCCcCCCEeEcCCC-------CEEeeCCCCccCCCCCCccC
Confidence            4678876 5577875 9999876       69999999999999999984

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=95.60  E-value=0.0041  Score=51.88  Aligned_cols=41  Identities=24%  Similarity=0.618  Sum_probs=33.8

Q ss_pred             CCCCccCCCcccccc-cceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          180 ENNPCFRTGNGGCEQ-LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~-lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      ..++|.. +.+.|.+ .|++.++       +|+|.|+.||.+..|+++|.
T Consensus       106 dideC~~-~~~~C~~g~C~n~~g-------~y~C~C~~Gy~g~~~~~~C~  147 (147)
T 2w86_A          106 DIDECEV-FPGVCKNGLCVNTRG-------SFKCQCPSGMTLDATGRICL  147 (147)
T ss_dssp             ECCHHHH-STTCSSSSEEEEETT-------EEEEECCTTCCBCTTSSCBC
T ss_pred             ccccccC-CCCCCCCCEEECCCC-------CEEeeCCCCCccCCCCCeeC
Confidence            4577875 4567876 8999876       69999999999999999984

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=95.31  E-value=0.73  Score=42.04  Aligned_cols=111  Identities=12%  Similarity=0.021  Sum_probs=77.9

Q ss_pred             cceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEe-CC----CCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCC
Q psy950           35 NTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVS-NG----ISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGG  109 (407)
Q Consensus        35 P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~-~~----~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~  109 (407)
                      ..+.++.+. |.++.++.+...+|...+.+|.....+.. ..    ...|.++++++ ++.+++++...++|...+.+|.
T Consensus        79 ~~~~~~~~d-G~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~G~  156 (276)
T 3no2_A           79 MQTARILPD-GNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPNGQ  156 (276)
T ss_dssp             EEEEEECTT-SCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTTSC
T ss_pred             ccccEECCC-CCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCCCC
Confidence            445566554 56666666523477777788876544332 11    12577888887 5667789989999999999987


Q ss_pred             eEEEEccCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCC
Q psy950          110 NRQIIRRNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       110 ~~~~~~~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~  148 (407)
                      ....+.. ...|+++.+.. +.++.++...++|...+..+
T Consensus       157 ~~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t  195 (276)
T 3no2_A          157 LLNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLES  195 (276)
T ss_dssp             EEEEEEC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred             EEEEEEC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence            6654432 35788888875 78899988888899988885

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=95.31  E-value=2.5  Score=42.46  Aligned_cols=125  Identities=14%  Similarity=0.055  Sum_probs=75.4

Q ss_pred             eecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEc--C-CCCeEEEEeC--CCCCeEEEEeCCCCCceeEEEeCCCCeEE
Q psy950           18 LRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDY--G-QYPRIGKSYL--DGSKWTSIVSNGISMPRDLTIDMQTHDVY   92 (407)
Q Consensus        18 ~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~--~-~~~~I~r~~~--dG~~~~~l~~~~~~~P~glaiD~~~~~lY   92 (407)
                      .++++..+.+.........+++..|. ..+|+++.  + ...+|++.+.  +|... .+.  ........++.+.++.++
T Consensus        50 ~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~--~~~~~~~~~~s~dg~~~~  125 (582)
T 3o4h_A           50 LYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLE--AVKPMRILSGVDTGEAVV  125 (582)
T ss_dssp             EEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECT--TSCSBEEEEEEECSSCEE
T ss_pred             EEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-ccc--CCCCceeeeeCCCCCeEE
Confidence            34555544443333234678888888 88999986  2 2347888999  88766 222  222344567777777777


Q ss_pred             EEeCCCCeEEEEecCCCeEEEEccCCCCceEEEE--eCCEEEEEeCC--C-CeEEEEecCC
Q psy950           93 WVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAV--HKSDVYWVDRN--L-RTVYKASKLA  148 (407)
Q Consensus        93 w~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav--~~~~lYwtd~~--~-~~I~~~~~~~  148 (407)
                      ++....+.+...++++...+.+.....  .++++  ++..|+++...  . ..|+..+..+
T Consensus       126 ~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~  184 (582)
T 3o4h_A          126 FTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS  184 (582)
T ss_dssp             EEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTT
T ss_pred             EEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC
Confidence            776655665677887776655442211  55555  45777765433  1 3577777654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=95.21  E-value=1.5  Score=38.63  Aligned_cols=241  Identities=9%  Similarity=0.049  Sum_probs=135.4

Q ss_pred             CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCC-CeEEEEccC--CCCceEEEEeC--C
Q psy950           55 YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNG-GNRQIIRRN--LPNPMGIAVHK--S  129 (407)
Q Consensus        55 ~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG-~~~~~~~~~--~~~P~~lav~~--~  129 (407)
                      ...|...++++.....+... -..+.++++.+.++.|+++.  .+.|...++++ .....+...  ...+..+++..  .
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~   97 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQT-PELFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA   97 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEE-SSCCEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS
T ss_pred             ceeEEEEeCCCCceeeeccC-CcceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceEeccccccccccceEECCCCC
Confidence            45788888876665555542 34678999999999888876  56899999987 655444322  24456677754  5


Q ss_pred             EEEEEeCC---CCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCC
Q psy950          130 DVYWVDRN---LRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQN  206 (407)
Q Consensus       130 ~lYwtd~~---~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~  206 (407)
                      .|+++...   ...|+.++..+ +   ....+... .                           ....++          
T Consensus        98 ~l~~~~~~~~~~~~l~~~~~~~-~---~~~~~~~~-~---------------------------~~~~~~----------  135 (297)
T 2ojh_A           98 LYAISDKVEFGKSAIYLLPSTG-G---TPRLMTKN-L---------------------------PSYWHG----------  135 (297)
T ss_dssp             EEEEEECTTTSSCEEEEEETTC-C---CCEECCSS-S---------------------------SEEEEE----------
T ss_pred             EEEEEEeCCCCcceEEEEECCC-C---ceEEeecC-C---------------------------CccceE----------
Confidence            67777643   34666666543 1   11111100 0                           000000          


Q ss_pred             CcceEEecCCCccccCCCCcccccceeeeeecc--c--ceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEe
Q psy950          207 KLHYKCDCATGTPSASDPKKCTTMDEYLVFSTR--T--EIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQI  282 (407)
Q Consensus       207 ~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~--~--~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~  282 (407)
                                   +.+|++       .|+++..  .  .|..+.+.....   .........+..+.+++.++.|+++..
T Consensus       136 -------------~spdg~-------~l~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~~~~~  192 (297)
T 2ojh_A          136 -------------WSPDGK-------SFTYCGIRDQVFDIYSMDIDSGVE---TRLTHGEGRNDGPDYSPDGRWIYFNSS  192 (297)
T ss_dssp             -------------ECTTSS-------EEEEEEEETTEEEEEEEETTTCCE---EECCCSSSCEEEEEECTTSSEEEEEEC
T ss_pred             -------------ECCCCC-------EEEEEECCCCceEEEEEECCCCcc---eEcccCCCccccceECCCCCEEEEEec
Confidence                         112221       1221111  1  233333322111   111112234677889999998888764


Q ss_pred             cC-CceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeCCC---------CCeEEEEECCCCcc--cc---cCCC
Q psy950          283 RP-WAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIRP---------WAKIAWIPTTNPSS--AS---SNLT  345 (407)
Q Consensus       283 ~~-~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~~~---------~~~I~v~~~~~~~r--l~---~~l~  345 (407)
                      .. ...|+.++.++.....  .....+..+++.+.++.|+++....         ...|.+.++.+...  +.   ..-.
T Consensus       193 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~  272 (297)
T 2ojh_A          193 RTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG  272 (297)
T ss_dssp             TTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT
T ss_pred             CCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc
Confidence            22 2567777766544332  2222567788999999998876531         04688899876542  32   1234


Q ss_pred             ceeEEEEcCCCCeEEEEe
Q psy950          346 NVVGVEFDYADDKILFTQ  363 (407)
Q Consensus       346 ~P~~iavdp~~g~lywtd  363 (407)
                      .+..++..|...+|+++.
T Consensus       273 ~~~~~~~spdg~~l~~~~  290 (297)
T 2ojh_A          273 TMNSPNWSPDGDEFAYVR  290 (297)
T ss_dssp             TSCSCCBCTTSSEEEEEE
T ss_pred             ccccceECCCCCEEEEEE
Confidence            566678888777777774

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=94.97  E-value=0.41  Score=43.79  Aligned_cols=110  Identities=5%  Similarity=-0.055  Sum_probs=80.0

Q ss_pred             CcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecC-CCeEE
Q psy950           34 ANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN-GGNRQ  112 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~d-G~~~~  112 (407)
                      .|+++++++. |.+++++... .+|...+.+|...-.+-.  -..|.+.++++ ++++++++...++|..++.+ |.-..
T Consensus       126 ~~~~v~~~~~-G~~lv~~~~~-~~v~~~d~~G~~~w~~~~--~~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w  200 (276)
T 3no2_A          126 QFRQINKNKK-GNYLVPLFAT-SEVREIAPNGQLLNSVKL--SGTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVR  200 (276)
T ss_dssp             SCSCCEECTT-SCEEEEETTT-TEEEEECTTSCEEEEEEC--SSCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred             cccCceECCC-CCEEEEecCC-CEEEEECCCCCEEEEEEC--CCCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence            4778888876 5566777765 489999998765444332  24788888876 67888888888899999999 87765


Q ss_pred             EEc-c-----CCCCceEEEEeC-CEEEEEeCC----------CCeEEEEecCC
Q psy950          113 IIR-R-----NLPNPMGIAVHK-SDVYWVDRN----------LRTVYKASKLA  148 (407)
Q Consensus       113 ~~~-~-----~~~~P~~lav~~-~~lYwtd~~----------~~~I~~~~~~~  148 (407)
                      .+. .     .+..|.++++.. +.+|.+++.          ...++.++.++
T Consensus       201 ~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g  253 (276)
T 3no2_A          201 RVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEG  253 (276)
T ss_dssp             EEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTS
T ss_pred             EecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCC
Confidence            553 1     355688999875 899999963          23577776654

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=94.90  E-value=0.29  Score=49.77  Aligned_cols=106  Identities=14%  Similarity=0.092  Sum_probs=73.3

Q ss_pred             CCCCCcceEEEeCCCCEEEEEEcC--------------------CCCeEEEEeCCCCC-------eEEEEeC--------
Q psy950           30 SFRSANTTSPFSPLPRLLYWIDYG--------------------QYPRIGKSYLDGSK-------WTSIVSN--------   74 (407)
Q Consensus        30 ~~~~~P~~iavdp~~g~lywtd~~--------------------~~~~I~r~~~dG~~-------~~~l~~~--------   74 (407)
                      ..+++|..|+++|.+|.+|.+=.+                    ....|.|...++.+       -..++..        
T Consensus       381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~  460 (592)
T 4a9v_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence            346789999999999999998432                    12579999886543       1233311        


Q ss_pred             -------------CCCCceeEEEeCCCCeEEE-EeCC-----------CCeEEEEecCCCeEEEEc--cCCCCceEEEEe
Q psy950           75 -------------GISMPRDLTIDMQTHDVYW-VDAK-----------LDLIQKISYNGGNRQIIR--RNLPNPMGIAVH  127 (407)
Q Consensus        75 -------------~~~~P~glaiD~~~~~lYw-~d~~-----------~~~I~~~~~dG~~~~~~~--~~~~~P~~lav~  127 (407)
                                   .+..|.+|++|.. +.||+ +|..           .+.+.+++.+....+.+.  .....|.||++.
T Consensus       461 ~~~~g~~~~~~~~~fnsPDnL~fd~~-G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafS  539 (592)
T 4a9v_A          461 TPKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFS  539 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEEC
T ss_pred             ccccCccCccccCccCCCCceEECCC-CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEEC
Confidence                         2568999999985 78999 8864           337888887544444333  345678999997


Q ss_pred             C--CEEEEEeC
Q psy950          128 K--SDVYWVDR  136 (407)
Q Consensus       128 ~--~~lYwtd~  136 (407)
                      .  ..||.+-.
T Consensus       540 PD~ktLfV~vQ  550 (592)
T 4a9v_A          540 PDQKTLFVGIQ  550 (592)
T ss_dssp             TTSSEEEEEEE
T ss_pred             CCCCEEEEEEe
Confidence            6  47887643

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=94.79  E-value=0.016  Score=43.51  Aligned_cols=41  Identities=24%  Similarity=0.561  Sum_probs=31.2

Q ss_pred             CCCccCCCcccccc-cceecCCCCCCCCcceEEecCCCccccC-CCCcccc
Q psy950          181 NNPCFRTGNGGCEQ-LCFSYPVEFPQNKLHYKCDCATGTPSAS-DPKKCTT  229 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~-lC~~~~~~~~~~~~~~~C~C~~G~~l~~-d~~~C~~  229 (407)
                      .++|.. +.+.|.+ .|++.++       +|+|.|+.||.+.. +++.|.+
T Consensus         3 ideC~~-~~~~C~~g~C~n~~g-------~y~C~C~~Gy~~~~~~g~~C~d   45 (86)
T 1lmj_A            3 IDECRI-SPDLCGRGQCVNTPG-------DFECKCDEGYESGFMMMKNCMD   45 (86)
T ss_dssp             CCTTTT-CSSTTTTSCEEEETT-------EEEECCCSSEEECTTTSSSEEE
T ss_pred             cccccC-CCCCCCCCEEECCCC-------CEEeeCCCCcCccCCCCCccCC
Confidence            577876 4556865 8999876       69999999998653 5778863

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=94.78  E-value=0.017  Score=54.56  Aligned_cols=43  Identities=30%  Similarity=0.781  Sum_probs=35.6

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      ..++|....++.|.+.|++..+       +|+|.|+.||.+..++++|..
T Consensus        42 ~~~eC~~~~~~~C~~~C~~~~g-------~~~C~C~~g~~~~~~~~~C~~   84 (317)
T 3h5c_B           42 AKNECHPERTDGCQHFCLPGQE-------SYTCSCAQGYRLGEDHKQCVP   84 (317)
T ss_dssp             CSSSCCTTCTTSCSSEEECCSS-------SCEEECCTTEECCTTSSCCEE
T ss_pred             CcccCCCCCCCCCcCccccCCC-------eeEEecccccccccccccccc
Confidence            5688975124799999999876       599999999998889999985

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=94.67  E-value=0.025  Score=40.98  Aligned_cols=36  Identities=17%  Similarity=0.252  Sum_probs=23.0

Q ss_pred             CCCccCCCccccc--ccceecCCCCCCCCcceEEecC-CCccccCCC
Q psy950          181 NNPCFRTGNGGCE--QLCFSYPVEFPQNKLHYKCDCA-TGTPSASDP  224 (407)
Q Consensus       181 ~n~C~~~~ng~Cs--~lC~~~~~~~~~~~~~~~C~C~-~G~~l~~d~  224 (407)
                      .++|.. ....|.  +.|+++++       +|+|.|. .||..+.++
T Consensus         3 idEC~~-~~~~C~~~~~C~Nt~G-------sy~C~~~~~g~~~~~~~   41 (71)
T 2kl7_A            3 VNECLT-IPEACKGEMKCINHYG-------GYLCLPRSAAVINDLHG   41 (71)
T ss_dssp             SCCTTC-CCCSCTTEEEEEETTC-------CEEEEETTSCCCSCCSC
T ss_pred             cccccC-CCCCCCCCCEeECCCC-------CeEecccCCcccccccC
Confidence            577875 456784  58999987       5999922 344433333

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=94.67  E-value=4.7  Score=41.60  Aligned_cols=75  Identities=12%  Similarity=0.075  Sum_probs=57.6

Q ss_pred             cceEEEeCCCCEEEEEEcCCCCeEEEEeCCCC---CeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE
Q psy950           35 NTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGS---KWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR  111 (407)
Q Consensus        35 P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~---~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~  111 (407)
                      ..++++.|...+|+++..   ..|...++++.   ..+.+.. .-..+..+++.+.+++|+++..  +.|...++++...
T Consensus       111 v~~~~~SpDg~~l~~~~~---~~i~~~d~~~~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~~--~~i~~~d~~~g~~  184 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG---GELYLYDLKQEGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIRG--RNLWVIDLASGRQ  184 (741)
T ss_dssp             SCCCEECTTSSEEEEEET---TEEEEEESSSCSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEET--TEEEEEETTTTEE
T ss_pred             cceeEECCCCCEEEEEeC---CcEEEEECCCCCcceEEEccc-CCcccccccCCCCCCEEEEEeC--CcEEEEecCCCCE
Confidence            478999999999998875   48999999877   5444433 2346789999999999988874  5899999988765


Q ss_pred             EEEc
Q psy950          112 QIIR  115 (407)
Q Consensus       112 ~~~~  115 (407)
                      ..+.
T Consensus       185 ~~~~  188 (741)
T 2ecf_A          185 MQLT  188 (741)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            5443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=94.65  E-value=4.6  Score=41.43  Aligned_cols=71  Identities=11%  Similarity=0.093  Sum_probs=49.7

Q ss_pred             EEEEcCCCEEEEEEecC---CceEEEEeCCCCcccc-cCCCCccEEEEeccCCeEEEEeCCCC--CeEEEEECCCCc
Q psy950          268 VEFDYADDKILFTQIRP---WAKIAWIPTTNPSSAS-SNLTNVVGVEFDYADDKILFTQIRPW--AKIAWIPTTNPS  338 (407)
Q Consensus       268 ld~d~~~~~lywsd~~~---~~~I~~~~~~~~~~~~-~~~~~~~glAvDwi~~~LYwtd~~~~--~~I~v~~~~~~~  338 (407)
                      +.+++.++.||++....   ...|+++++++..... .....+..+++.+-++.|.++.+...  ..|.+.++++..
T Consensus       361 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          361 AGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             eEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            68899999999987654   1378999887654322 22226778899988888887744321  468998887664

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.53  E-value=3  Score=38.83  Aligned_cols=80  Identities=10%  Similarity=-0.011  Sum_probs=54.8

Q ss_pred             cceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEE
Q psy950           35 NTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQI  113 (407)
Q Consensus        35 P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~  113 (407)
                      +..+++.|...+|+++... ....|+..++++.....+.........+++..+.+++|+++... +.|..+++++...+.
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNE-LNLMKVDLETLEEQV  116 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETT-TEEEEEETTTCCEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcC-CcEEEEECCCCCcEE
Confidence            6778899999888777543 33489999998876554433222122347788989999888754 379999998776544


Q ss_pred             Ec
Q psy950          114 IR  115 (407)
Q Consensus       114 ~~  115 (407)
                      +.
T Consensus       117 ~~  118 (396)
T 3c5m_A          117 IY  118 (396)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=94.52  E-value=3.2  Score=39.00  Aligned_cols=247  Identities=11%  Similarity=0.030  Sum_probs=130.0

Q ss_pred             CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCC----CCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCC
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDG----SKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNG  108 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG----~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG  108 (407)
                      ....++++.|...+|+-....  ..|...+++.    ......+...-.....+++.+.+++++.+-...+.|...++..
T Consensus        68 ~~v~~~~~s~~~~~l~~~~~d--g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~  145 (416)
T 2pm9_A           68 SKFNDLDWSHNNKIIAGALDN--GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK  145 (416)
T ss_dssp             SCEEEEEECSSSSCEEEEESS--SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred             CceEEEEECCCCCeEEEEccC--CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence            346899999988777766543  3677777765    2222222222346789999987555666666678888888875


Q ss_pred             Ce------EE-EE---ccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCC
Q psy950          109 GN------RQ-II---RRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQ  176 (407)
Q Consensus       109 ~~------~~-~~---~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~q  176 (407)
                      ..      .. .+   ........++++..  +.++.+-...+.|...+... +  .....+.                .
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~--~~~~~~~----------------~  206 (416)
T 2pm9_A          146 CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA-K--KEVIHLS----------------Y  206 (416)
T ss_dssp             TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT-T--EEEEEEC----------------C
T ss_pred             CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC-C--CcceEEe----------------c
Confidence            54      21 11   12234556777765  35666655556666666543 1  1111110                0


Q ss_pred             CCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeeccc----ceEEeecCCCCC
Q psy950          177 PPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRT----EIRALHLDPTLT  252 (407)
Q Consensus       177 p~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~----~I~~i~l~~~~~  252 (407)
                      +    .+... .......+++.                       +++.      .+++.+...    .|+-..+.....
T Consensus       207 ~----~~~~~-~~~~v~~~~~~-----------------------~~~~------~~l~~~~~d~~~~~i~~~d~~~~~~  252 (416)
T 2pm9_A          207 T----SPNSG-IKQQLSVVEWH-----------------------PKNS------TRVATATGSDNDPSILIWDLRNANT  252 (416)
T ss_dssp             C----CCSSC-CCCCEEEEEEC-----------------------SSCT------TEEEEEECCSSSCCCCEEETTSTTS
T ss_pred             c----ccccc-cCCceEEEEEC-----------------------CCCC------CEEEEEECCCCCceEEEEeCCCCCC
Confidence            0    00000 00111111111                       1110      011111111    233333322111


Q ss_pred             eeeeEee--cCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc---cCCCCccEEEEeccCCeEEEEeCCCCC
Q psy950          253 AVPFKTV--SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS---SNLTNVVGVEFDYADDKILFTQIRPWA  327 (407)
Q Consensus       253 ~~~~~~~--~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~---~~~~~~~glAvDwi~~~LYwtd~~~~~  327 (407)
                        +...+  .....+.++++.+.++.++.+-... +.|...++.......   .....+..+++.+.+..++.+-+.. +
T Consensus       253 --~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-g~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-~  328 (416)
T 2pm9_A          253 --PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD-NTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD-N  328 (416)
T ss_dssp             --CSBCCCSCCSSCEEEEEECSSCSSCEEEEESS-SEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS-S
T ss_pred             --CcEEeecCccCceeEEEeCCCCCCeEEEEeCC-CCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecC-C
Confidence              11111  1234567888888444445555555 678888877654332   2223788999998876777777777 7


Q ss_pred             eEEEEECCCCc
Q psy950          328 KIAWIPTTNPS  338 (407)
Q Consensus       328 ~I~v~~~~~~~  338 (407)
                      +|.+.++....
T Consensus       329 ~i~iw~~~~~~  339 (416)
T 2pm9_A          329 KIEVQTLQNLT  339 (416)
T ss_dssp             EEEEEESCCCC
T ss_pred             cEEEEEccCCC
Confidence            89999887654

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=94.27  E-value=0.015  Score=43.76  Aligned_cols=40  Identities=38%  Similarity=0.835  Sum_probs=32.7

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEec--CCCccccCCCCcccc
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDC--ATGTPSASDPKKCTT  229 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C--~~G~~l~~d~~~C~~  229 (407)
                      ..++|..   +.|.+.|++.++       +|+|.|  ..||.+..|+++|.+
T Consensus        44 dideC~~---~~C~~~C~n~~g-------~y~C~C~g~~G~~~~~~~~~C~d   85 (87)
T 1z6c_A           44 DIDECSE---NMCAQLCVNYPG-------GYTCYCDGKKGFKLAQDQKSCEV   85 (87)
T ss_dssp             CCCHHHH---SCCSSEECCCSS-------SCCEECCSSSCCBCCTTSSSCBC
T ss_pred             CcCeeCC---CCCCCEEEccCC-------CEEEECCCCcCCcccCCCCcceE
Confidence            4577854   679999999876       599999  489999999999964

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=94.20  E-value=0.012  Score=54.36  Aligned_cols=41  Identities=17%  Similarity=0.584  Sum_probs=31.7

Q ss_pred             CCCCccCCCcccccc--cceecCCCCCCCCcceEEecCCCccccCCCCccccc
Q psy950          180 ENNPCFRTGNGGCEQ--LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTM  230 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~--lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~  230 (407)
                      ..|+|.. +.+.|.+  .|.++++       +|+|.|..||.  .||..|.+.
T Consensus         4 DiDEC~~-~~~~C~~~a~C~Nt~G-------sy~C~C~~Gy~--GnG~~C~d~   46 (285)
T 1gl4_A            4 AQQTCAN-NRHQCSVHAECRDYAT-------GFCCRCVANYT--GNGRQCVAE   46 (285)
T ss_dssp             ---CHHH-HGGGSCTTEEEEECSS-------CEEEEECTTEE--ECSSSEEET
T ss_pred             cchhccC-CCCCCCCCCEeEcCCC-------CeEEEcCCCCC--CCCCcCCCC
Confidence            5689986 6688974  6999987       59999999997  689999843

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=94.18  E-value=6.1  Score=40.88  Aligned_cols=94  Identities=6%  Similarity=-0.023  Sum_probs=60.7

Q ss_pred             CCCCEEEEEEcC---CCCeEEEEeCCCCCeEEEEeCCC------CCceeEEEeCCCCeEEEEeCCC--C--eEEEEecCC
Q psy950           42 PLPRLLYWIDYG---QYPRIGKSYLDGSKWTSIVSNGI------SMPRDLTIDMQTHDVYWVDAKL--D--LIQKISYNG  108 (407)
Q Consensus        42 p~~g~lywtd~~---~~~~I~r~~~dG~~~~~l~~~~~------~~P~glaiD~~~~~lYw~d~~~--~--~I~~~~~dG  108 (407)
                      |..+++|++-..   ..+.|++.+.+|...++|+..+.      ....++++.+.+++|.++-...  .  .|...++++
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            668888887542   13488999988777777764221      1246889999999887765432  2  899999987


Q ss_pred             CeEEEE-ccCCCCceEEEEeC--CEEEEEeC
Q psy950          109 GNRQII-RRNLPNPMGIAVHK--SDVYWVDR  136 (407)
Q Consensus       109 ~~~~~~-~~~~~~P~~lav~~--~~lYwtd~  136 (407)
                      ...... .... ...++++..  ..||++..
T Consensus       161 g~~~~~~~~~~-~~~~~~wspDg~~l~~~~~  190 (710)
T 2xdw_A          161 AKELPDVLERV-KFSCMAWTHDGKGMFYNAY  190 (710)
T ss_dssp             TEEEEEEEEEE-CSCCEEECTTSSEEEEEEC
T ss_pred             CCCCcccccCc-ccceEEEEeCCCEEEEEEE
Confidence            765432 2211 244567653  57777654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=93.99  E-value=8.4  Score=41.87  Aligned_cols=95  Identities=13%  Similarity=0.068  Sum_probs=61.9

Q ss_pred             ceEEEEEE-cCCCEEEEEEecCCceEEEEeCCCCcccc--cCCC-CccEEEEeccCCeEEEEeCCCCCeEE-EEECCCCc
Q psy950          264 NVVGVEFD-YADDKILFTQIRPWAKIAWIPTTNPSSAS--SNLT-NVVGVEFDYADDKILFTQIRPWAKIA-WIPTTNPS  338 (407)
Q Consensus       264 ~~~ald~d-~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~~-~~~glAvDwi~~~LYwtd~~~~~~I~-v~~~~~~~  338 (407)
                      .+.++.+. +.+++|.+..  . ..|+.++..+.....  .... .+.++++. -++.|++... . ..|. +.++++..
T Consensus       297 ~v~~~~~S~pdG~~la~~~--~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-~-~~l~~~~d~~~~~  370 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS--R-GQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-E-GDFLGIYDYRTGK  370 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE--T-TEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-T-EEEEEEEETTTCC
T ss_pred             ccceeeecCCCCCEEEEEE--c-CEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-C-CceEEEEECCCCC
Confidence            45678888 8888887776  4 568888777654332  1111 34455554 4556777766 4 5788 88887654


Q ss_pred             c--cccCCCceeEEEEcCCCCeEEEEeC
Q psy950          339 S--ASSNLTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       339 r--l~~~l~~P~~iavdp~~g~lywtd~  364 (407)
                      .  +......+..+++.|-..+|++...
T Consensus       371 ~~~l~~~~~~~~~~~~SpDG~~la~~~~  398 (1045)
T 1k32_A          371 AEKFEENLGNVFAMGVDRNGKFAVVAND  398 (1045)
T ss_dssp             EEECCCCCCSEEEEEECTTSSEEEEEET
T ss_pred             ceEecCCccceeeeEECCCCCEEEEECC
Confidence            2  4333467889999998777777654

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=93.90  E-value=0.032  Score=47.14  Aligned_cols=41  Identities=24%  Similarity=0.570  Sum_probs=32.4

Q ss_pred             CCCccCCCcccc-cccceecCCCCCCCCcceEEecCCCccccCCCCccccc
Q psy950          181 NNPCFRTGNGGC-EQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTM  230 (407)
Q Consensus       181 ~n~C~~~~ng~C-s~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~  230 (407)
                      .|+|..  ...| .+.|++.++       +|+|.|+.||.|.+++++|...
T Consensus         3 ideC~~--~~~C~~~~C~n~~g-------sy~C~C~~Gy~~~~~g~~C~d~   44 (162)
T 1uzk_A            3 VNECLD--PTTCISGNCVNTPG-------SYICDCPPDFELNPTRVGCVDT   44 (162)
T ss_dssp             CCGGGS--TTSSBTSEEEEETT-------EEEEECCTTCEECTTSSBEECC
T ss_pred             cccCCC--CCCCCCCEeECCCC-------CEEEeCCCCCeECCCCCcccCC
Confidence            567763  2356 478999876       6999999999999999999743

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=93.75  E-value=4  Score=37.28  Aligned_cols=295  Identities=6%  Similarity=-0.042  Sum_probs=149.3

Q ss_pred             EEEeeeeecCCcceEEEcCCC-CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCe
Q psy950           12 WAIRLALRLLKKKKKLKTSFR-SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHD   90 (407)
Q Consensus        12 ~s~~~~~~~~~~~~~l~~~~~-~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~   90 (407)
                      ++-......|+..+.+...+- ....++++.|...+|+-....  ..|...++........+...-.....+++.+.++.
T Consensus        11 ~~~~~~~~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~   88 (369)
T 3zwl_B           11 SSGENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKD--SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKY   88 (369)
T ss_dssp             --CCCCCSSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESS--SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE
T ss_pred             cCCcceEEeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCC--CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCE
Confidence            344445556665555444444 446999999987777766543  36777777654444444333446789999997666


Q ss_pred             EEEEeCCCCeEEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCC----CCeEEEEecCCCCCCcccEEcccCCCC
Q psy950           91 VYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRN----LRTVYKASKLASTNITLPTPIRTGLSG  164 (407)
Q Consensus        91 lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~----~~~I~~~~~~~~g~~~~~~~i~~~~~~  164 (407)
                      |+.+. ..+.|...++..............+..+++..  ..++.....    .+.|...+... +. .....       
T Consensus        89 l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~-~~-~~~~~-------  158 (369)
T 3zwl_B           89 CVTGS-ADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER-DS-ATHEL-------  158 (369)
T ss_dssp             EEEEE-TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEE-CT-TTCCE-------
T ss_pred             EEEEe-CCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecC-Cc-cceee-------
Confidence            66554 46788888887554433223344566777765  233333221    13343333322 00 00000       


Q ss_pred             ceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec-ccceE
Q psy950          165 LRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST-RTEIR  243 (407)
Q Consensus       165 p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~-~~~I~  243 (407)
                          ....  ..+. .  .... ..+.                ....|.+-     .+++       .+|+.+. ...|.
T Consensus       159 ----~~~~--~~~~-~--~~~~-~~~~----------------~~~~~~~~-----~~~~-------~~l~~~~~dg~i~  200 (369)
T 3zwl_B          159 ----TKVS--EEPI-H--KIIT-HEGL----------------DAATVAGW-----STKG-------KYIIAGHKDGKIS  200 (369)
T ss_dssp             ----EEEC--SSCS-E--EEEC-CTTC----------------CCEEEEEE-----CGGG-------CEEEEEETTSEEE
T ss_pred             ----cccc--ccee-e--eccC-CcCc----------------cceeEEEE-----cCCC-------CEEEEEcCCCEEE
Confidence                0000  0000 0  0000 0000                01111111     1111       1222222 23344


Q ss_pred             EeecCCCCCeeeeEee-cCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEE
Q psy950          244 ALHLDPTLTAVPFKTV-SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILF  320 (407)
Q Consensus       244 ~i~l~~~~~~~~~~~~-~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYw  320 (407)
                      -..+.....  ++..+ .....+.++++++.++.|+.... . +.|...++.......  .....+..+++.+.++.|+.
T Consensus       201 i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  276 (369)
T 3zwl_B          201 KYDVSNNYE--YVDSIDLHEKSISDMQFSPDLTYFITSSR-D-TNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIIL  276 (369)
T ss_dssp             EEETTTTTE--EEEEEECCSSCEEEEEECTTSSEEEEEET-T-SEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEE
T ss_pred             EEECCCCcE--eEEEEecCCCceeEEEECCCCCEEEEecC-C-ceEEEEECCCCceeeeecCCCCceeEEecCCCceEEE
Confidence            444433111  11111 22345778999988777766543 3 568888887654433  22237889999999988888


Q ss_pred             EeCCCCC-------------eEEEEECCCCcc---cccCCCceeEEEEcCCCCeEEE
Q psy950          321 TQIRPWA-------------KIAWIPTTNPSS---ASSNLTNVVGVEFDYADDKILF  361 (407)
Q Consensus       321 td~~~~~-------------~I~v~~~~~~~r---l~~~l~~P~~iavdp~~g~lyw  361 (407)
                      ..... .             .|.+.++.....   +.........+++.|...+|+-
T Consensus       277 ~~~~~-~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  332 (369)
T 3zwl_B          277 GGGQE-AKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYAS  332 (369)
T ss_dssp             EECCC--------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eecCC-CceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEE
Confidence            76654 2             455666554432   2223456777888875544443

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=93.51  E-value=0.018  Score=46.02  Aligned_cols=39  Identities=23%  Similarity=0.686  Sum_probs=31.3

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCC-CCcc
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASD-PKKC  227 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d-~~~C  227 (407)
                      ..++|..  ++.|.+.|++.++       +|+|.|+.||.+..+ +++|
T Consensus        79 dideC~~--~~~C~~~C~n~~g-------~y~C~C~~G~~g~~~~g~~C  118 (118)
T 1dx5_I           79 DIDECEN--GGFCSGVCHNLPG-------TFECICGPDSALAGQIGTDC  118 (118)
T ss_dssp             ECCHHHH--CSSCSSEEEECSS-------SEEEEECSSSSCEEEESCCC
T ss_pred             cccccCC--CCCCcCeEEeCCC-------CEEEECCCCCccCCCCCCCC
Confidence            3577864  3678899999876       599999999998777 7766

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=93.45  E-value=0.72  Score=47.20  Aligned_cols=116  Identities=6%  Similarity=0.026  Sum_probs=79.6

Q ss_pred             CCcceEEEeCCCCEEEEEEcC--------CCCeEEEEeCCC------CCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCC
Q psy950           33 SANTTSPFSPLPRLLYWIDYG--------QYPRIGKSYLDG------SKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKL   98 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~--------~~~~I~r~~~dG------~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~   98 (407)
                      ....++++.|...+|+++...        ....|.+.+++|      ...+.+...+.....++++.+.+++|+|+....
T Consensus       130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~  209 (662)
T 3azo_A          130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDH  209 (662)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECT
T ss_pred             ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCC
Confidence            356889999999999988643        114899999998      555544412334567889999999999987432


Q ss_pred             -------CeEEEEecCC-C---eEEEEcc-CCCCceEEEEeC-CEEEEEeCCCC--eEEEEecCC
Q psy950           99 -------DLIQKISYNG-G---NRQIIRR-NLPNPMGIAVHK-SDVYWVDRNLR--TVYKASKLA  148 (407)
Q Consensus        99 -------~~I~~~~~dG-~---~~~~~~~-~~~~P~~lav~~-~~lYwtd~~~~--~I~~~~~~~  148 (407)
                             ..|..+++++ .   ..+.+.. ....+..+++.. +.+|++....+  .|++++..+
T Consensus       210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~  274 (662)
T 3azo_A          210 PRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT  274 (662)
T ss_dssp             TCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred             CCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence                   5799999984 3   3334433 245677888764 45777655444  788877654

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=93.31  E-value=0.057  Score=40.05  Aligned_cols=38  Identities=18%  Similarity=0.516  Sum_probs=27.5

Q ss_pred             CCCccCCCccccc-ccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          181 NNPCFRTGNGGCE-QLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       181 ~n~C~~~~ng~Cs-~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      .++|..  ...|. +.|++.++       +|+|.|+.||.+.++ ++|.
T Consensus        44 ideC~~--~~~C~~~~C~n~~g-------~y~C~C~~G~~g~~~-~~C~   82 (82)
T 1emn_A           44 TDECSV--GNPCGNGTCKNVIG-------GFECTCEEGFEPGPM-MTCE   82 (82)
T ss_dssp             CCGGGT--CCTTSSSCEEECSS-------SEEECCSSSSCCCSS-SCCC
T ss_pred             cccccC--CCCCCCCEeECCCC-------CEEeECCCCeEeCCC-CccC
Confidence            466753  23554 58888876       599999999998777 7773

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=92.62  E-value=0.05  Score=40.36  Aligned_cols=38  Identities=21%  Similarity=0.634  Sum_probs=27.9

Q ss_pred             CCCCccCCCcccccc-cceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          180 ENNPCFRTGNGGCEQ-LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~-lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      ..++|..  +..|.+ .|++.++       +|+|.|+.||.+  +++.|.
T Consensus         4 dideC~~--~~~C~~g~C~n~~g-------~y~C~C~~Gy~~--~g~~C~   42 (82)
T 1emn_A            4 DMDECKE--PDVCKHGQCINTDG-------SYRCECPFGYIL--AGNECV   42 (82)
T ss_dssp             CCCSSSS--TTSCSSSEECCCSS-------CCCEECCTTEEE--ETTEEE
T ss_pred             ccccCCC--CCCcCCCEEEecCC-------CEEEECCCCeEC--CCCccC
Confidence            3467753  356665 7888776       599999999986  577785

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=92.38  E-value=12  Score=38.96  Aligned_cols=70  Identities=6%  Similarity=-0.007  Sum_probs=48.5

Q ss_pred             CCCCEEEEEEcCC---CCeEEEEeCC---CCCeEEEEeCC-C-----CCceeEEEeCCCCeEEEEeCC--C--CeEEEEe
Q psy950           42 PLPRLLYWIDYGQ---YPRIGKSYLD---GSKWTSIVSNG-I-----SMPRDLTIDMQTHDVYWVDAK--L--DLIQKIS  105 (407)
Q Consensus        42 p~~g~lywtd~~~---~~~I~r~~~d---G~~~~~l~~~~-~-----~~P~glaiD~~~~~lYw~d~~--~--~~I~~~~  105 (407)
                      |..+++|++-...   .+.|+|.+.+   |...++|+..+ +     ....++++.+.+++|.++-..  .  ..|...+
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            6788888875432   4689999987   66667765422 1     134678999998888776432  2  3699999


Q ss_pred             cCCCeE
Q psy950          106 YNGGNR  111 (407)
Q Consensus       106 ~dG~~~  111 (407)
                      +++...
T Consensus       196 l~tg~~  201 (741)
T 1yr2_A          196 VADGKP  201 (741)
T ss_dssp             TTTCCE
T ss_pred             CCCCCC
Confidence            987765

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=92.37  E-value=0.11  Score=32.37  Aligned_cols=23  Identities=30%  Similarity=0.600  Sum_probs=17.0

Q ss_pred             cceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          195 LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       195 lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      .|++..+       +|+|.|+.||.    |..|.
T Consensus        16 ~C~~~~~-------~~~C~C~~G~~----G~~Ce   38 (39)
T 1edm_B           16 SCKDDIN-------SYECWCPFGFE----GKNCE   38 (39)
T ss_dssp             EEEEETT-------EEEEECCTTCC----STTSC
T ss_pred             EeEcCCC-------ceEeECCCCCc----CCccC
Confidence            4666554       69999999996    66663

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=92.14  E-value=1.2  Score=41.68  Aligned_cols=113  Identities=12%  Similarity=0.037  Sum_probs=69.1

Q ss_pred             cceEEEeCCCCEEEEEEc-CCCC--eEEEEeCCCCCeEEEEeCCC-----CCceeEEEeCCCCeEEEEe--------CCC
Q psy950           35 NTTSPFSPLPRLLYWIDY-GQYP--RIGKSYLDGSKWTSIVSNGI-----SMPRDLTIDMQTHDVYWVD--------AKL   98 (407)
Q Consensus        35 P~~iavdp~~g~lywtd~-~~~~--~I~r~~~dG~~~~~l~~~~~-----~~P~glaiD~~~~~lYw~d--------~~~   98 (407)
                      ....+..|...+|+++.. ....  .|.+.++++...+.+....-     ..|.++++.+.++.|+++-        ...
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  319 (388)
T 3pe7_A          240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEND  319 (388)
T ss_dssp             EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCC
T ss_pred             cccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCC
Confidence            346789999887866543 2322  49999999877666544221     1256667777788888753        456


Q ss_pred             CeEEEEecCCCeEEEEccCCC-----------CceEEEEe--CCEEEEEeCCCC--eEEEEecC
Q psy950           99 DLIQKISYNGGNRQIIRRNLP-----------NPMGIAVH--KSDVYWVDRNLR--TVYKASKL  147 (407)
Q Consensus        99 ~~I~~~~~dG~~~~~~~~~~~-----------~P~~lav~--~~~lYwtd~~~~--~I~~~~~~  147 (407)
                      ..|..+++++...+.+.....           ....+++.  +.+||++....+  .|++++..
T Consensus       320 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~  383 (388)
T 3pe7_A          320 PFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP  383 (388)
T ss_dssp             CEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             CEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence            689999999877655542222           24455654  367888765433  56666654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=91.89  E-value=8.4  Score=36.22  Aligned_cols=267  Identities=10%  Similarity=-0.008  Sum_probs=136.2

Q ss_pred             CCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeE----EEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEec
Q psy950           31 FRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWT----SIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISY  106 (407)
Q Consensus        31 ~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~----~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~  106 (407)
                      ....+..++.+|....++|+-... ..|...+++...+.    ..+...-.....++..+.++.++.+-...+.|...++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~-g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~  111 (402)
T 2aq5_A           33 TTWDSGFCAVNPKFMALICEASGG-GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI  111 (402)
T ss_dssp             CCCSSCSEEECSSEEEEEBCCSSS-CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEEC
T ss_pred             CccCCCcEEECCCeEEEEEEEcCC-CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc
Confidence            334567788888866666654433 47888887654321    1111122356889999844555555556678888887


Q ss_pred             CCCe--------EEEEccCCCCceEEEEeCC--EEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCC
Q psy950          107 NGGN--------RQIIRRNLPNPMGIAVHKS--DVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQ  176 (407)
Q Consensus       107 dG~~--------~~~~~~~~~~P~~lav~~~--~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~q  176 (407)
                      ....        ...+.........|++..+  .++.+-...+.|...+... +  .....+.               ..
T Consensus       112 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~--~~~~~~~---------------~~  173 (402)
T 2aq5_A          112 PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-G--AAVLTLG---------------PD  173 (402)
T ss_dssp             CTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-T--EEEEEEC---------------TT
T ss_pred             cCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-C--CccEEEe---------------cC
Confidence            6542        2333334455667777653  3555544455555555443 1  1111110               00


Q ss_pred             CCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec-ccceEEeecCCCCCeee
Q psy950          177 PPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST-RTEIRALHLDPTLTAVP  255 (407)
Q Consensus       177 p~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~-~~~I~~i~l~~~~~~~~  255 (407)
                         .       ..+....+++.                       +++.       +|+.+. ...|+-..+........
T Consensus       174 ---~-------~~~~v~~~~~~-----------------------~~~~-------~l~~~~~d~~i~iwd~~~~~~~~~  213 (402)
T 2aq5_A          174 ---V-------HPDTIYSVDWS-----------------------RDGA-------LICTSCRDKRVRVIEPRKGTVVAE  213 (402)
T ss_dssp             ---T-------CCSCEEEEEEC-----------------------TTSS-------CEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ---C-------CCCceEEEEEC-----------------------CCCC-------EEEEEecCCcEEEEeCCCCceeee
Confidence               0       00111111111                       1110       011111 11222222222110000


Q ss_pred             eEeecCCcceEEEEEEcCCCEEEEEE--ecCCceEEEEeCCCCccc---c--cCCCCccEEEEeccCCeEEEEeCCCCCe
Q psy950          256 FKTVSNLTNVVGVEFDYADDKILFTQ--IRPWAKIAWIPTTNPSSA---S--SNLTNVVGVEFDYADDKILFTQIRPWAK  328 (407)
Q Consensus       256 ~~~~~~~~~~~ald~d~~~~~lywsd--~~~~~~I~~~~~~~~~~~---~--~~~~~~~glAvDwi~~~LYwtd~~~~~~  328 (407)
                      +........+..+.+.+.++.|+...  ... +.|...++......   .  .....+..+++++.++.||.+.... +.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d-g~  291 (402)
T 2aq5_A          214 KDRPHEGTRPVHAVFVSEGKILTTGFSRMSE-RQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD-SS  291 (402)
T ss_dssp             EECSSCSSSCCEEEECSTTEEEEEEECTTCC-EEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC-SC
T ss_pred             eccCCCCCcceEEEEcCCCcEEEEeccCCCC-ceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC-Ce
Confidence            00111112245677776554444332  234 67888887664321   1  2223788999999999999998777 78


Q ss_pred             EEEEECCCCcc----cc--cCCCceeEEEEcCCCCe
Q psy950          329 IAWIPTTNPSS----AS--SNLTNVVGVEFDYADDK  358 (407)
Q Consensus       329 I~v~~~~~~~r----l~--~~l~~P~~iavdp~~g~  358 (407)
                      |.+.++.....    +.  ..-..+.+++..|...+
T Consensus       292 i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~  327 (402)
T 2aq5_A          292 IRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGL  327 (402)
T ss_dssp             EEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGS
T ss_pred             EEEEEecCCCcceEeecccccCCcccceEEeccccc
Confidence            99998876542    22  22366788888886543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=91.68  E-value=4.6  Score=41.09  Aligned_cols=117  Identities=9%  Similarity=-0.032  Sum_probs=70.5

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCC--CCC------ceeEEEeCCCCeEEEEeCCCCeEEE
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNG--ISM------PRDLTIDMQTHDVYWVDAKLDLIQK  103 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~--~~~------P~glaiD~~~~~lYw~d~~~~~I~~  103 (407)
                      ...+.+++..|....+|-++.+...+|++.++++...+.+....  ...      ...+++.+.++.+|........|..
T Consensus       241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~  320 (662)
T 3azo_A          241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGI  320 (662)
T ss_dssp             TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEE
T ss_pred             CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEE
Confidence            45678899999877444444433348999998766655554321  111      3466776655544444444557888


Q ss_pred             EecCCCeEEEEccCCCCceEE-EEeCCEEEEEeCCCC---eEEEEecCC
Q psy950          104 ISYNGGNRQIIRRNLPNPMGI-AVHKSDVYWVDRNLR---TVYKASKLA  148 (407)
Q Consensus       104 ~~~dG~~~~~~~~~~~~P~~l-av~~~~lYwtd~~~~---~I~~~~~~~  148 (407)
                      +++++...+.+........++ +.+++.++++-....   .|+.++..+
T Consensus       321 ~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~  369 (662)
T 3azo_A          321 LDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVT  369 (662)
T ss_dssp             EETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTT
T ss_pred             EECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            898877766554333334456 677777776654333   677777654

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=91.54  E-value=0.079  Score=43.64  Aligned_cols=41  Identities=22%  Similarity=0.564  Sum_probs=31.7

Q ss_pred             CCCccCCCccccc--ccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          181 NNPCFRTGNGGCE--QLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       181 ~n~C~~~~ng~Cs--~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      .++|.. ....|.  +.|++.++       +|+|.|+.||.+..+++.|..
T Consensus        96 ideC~~-~~~~C~~~~~C~n~~g-------~y~C~C~~Gy~g~~~~~~C~~  138 (143)
T 2bou_A           96 VDECSS-GQHQCDSSTVCFNTVG-------SYSCRCRPGWKPRHGIPNNQK  138 (143)
T ss_dssp             CCHHHH-TCCCCCTTSEEEECSS-------CEEEECCSSSCBCTTCCSSBT
T ss_pred             ccCccC-cCCCCCCCCEEECCCC-------CEEeeCCCCcccCCCCccCcc
Confidence            456654 345665  68998876       699999999999889998864

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=91.42  E-value=0.097  Score=43.33  Aligned_cols=40  Identities=18%  Similarity=0.573  Sum_probs=31.3

Q ss_pred             CCCCccCCCcccccc-cceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          180 ENNPCFRTGNGGCEQ-LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~-lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      ..++|..   ..|.+ .|++.++       +|+|.|+.||.+..++++|..
T Consensus         3 dideC~~---~pC~ng~C~n~~g-------~y~C~C~~G~~g~~~~~~C~~   43 (147)
T 2w86_A            3 DIDECES---SPCINGVCKNSPG-------SFICECSSESTLDPTKTICIE   43 (147)
T ss_dssp             CCCGGGG---CCSBTSEEEEETT-------EEEEECCTTEEECTTSSBEEE
T ss_pred             cCccCcC---CCCCCCEeECCCC-------CEEeECCCCcccCCCCCeecC
Confidence            3567764   45764 8998876       699999999998888888864

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=90.78  E-value=0.15  Score=34.82  Aligned_cols=36  Identities=28%  Similarity=0.685  Sum_probs=23.0

Q ss_pred             CCCCccCCCcccccccc-eecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          180 ENNPCFRTGNGGCEQLC-FSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC-~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      ..+||.  |.|.|..+= +...       .+|+|.||.||.    |..|.
T Consensus        12 ~s~pC~--NgGtC~~~~~~d~~-------~~y~C~C~~g~~----G~~CE   48 (55)
T 3u7u_G           12 EKTFCV--NGGECFMVKDLSNP-------SRYLCKCPNEFT----GDRCQ   48 (55)
T ss_dssp             TTTTSC--TTCEEEEECCC--C-------CCEEEEECTTEE----STTSC
T ss_pred             cCCCCC--CCCCcCCCCccCCC-------CCEeEeCCCCCc----CCCcC
Confidence            457885  356664321 2222       369999999998    88885

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=90.41  E-value=6.2  Score=42.95  Aligned_cols=106  Identities=12%  Similarity=0.004  Sum_probs=77.2

Q ss_pred             CCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCC---------CeE
Q psy950           31 FRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKL---------DLI  101 (407)
Q Consensus        31 ~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~---------~~I  101 (407)
                      ....+.++++.|...+|+++...  ..|...++++.....+..........++..+.++.|.++....         ..|
T Consensus       377 ~~~~~~~~~~SpDG~~la~~~~~--~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i  454 (1045)
T 1k32_A          377 NLGNVFAMGVDRNGKFAVVANDR--FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  454 (1045)
T ss_dssp             CCCSEEEEEECTTSSEEEEEETT--SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             CccceeeeEECCCCCEEEEECCC--CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeE
Confidence            33567899999999999887654  3899999987666666644444568899999999998876432         589


Q ss_pred             EEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCC
Q psy950          102 QKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNL  138 (407)
Q Consensus       102 ~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~  138 (407)
                      ...++++.....+......+..+++..  .+|||.....
T Consensus       455 ~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~  493 (1045)
T 1k32_A          455 HVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS  493 (1045)
T ss_dssp             EEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred             EEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence            999998776555544455567777754  6788876543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=89.86  E-value=19  Score=36.90  Aligned_cols=94  Identities=4%  Similarity=-0.018  Sum_probs=60.6

Q ss_pred             CCCCEEEEEEcCC---CCeEEEEeCCCCCeEEEEeCCC------CCceeEEEeCCCCeEEEEeCCC----CeEEEEecCC
Q psy950           42 PLPRLLYWIDYGQ---YPRIGKSYLDGSKWTSIVSNGI------SMPRDLTIDMQTHDVYWVDAKL----DLIQKISYNG  108 (407)
Q Consensus        42 p~~g~lywtd~~~---~~~I~r~~~dG~~~~~l~~~~~------~~P~glaiD~~~~~lYw~d~~~----~~I~~~~~dG  108 (407)
                      |..+++|++-...   .+.|+|.+.+|...++|+..+.      ....++++.+.+++|.++-...    ..|...++++
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            5678888875432   4689999998888777775321      1356889999999877664322    5799999987


Q ss_pred             CeEEEEccCCCCc--eEEEEeC--CEEEEEeC
Q psy950          109 GNRQIIRRNLPNP--MGIAVHK--SDVYWVDR  136 (407)
Q Consensus       109 ~~~~~~~~~~~~P--~~lav~~--~~lYwtd~  136 (407)
                      ..... ...+...  .++++.+  ..||++..
T Consensus       157 g~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~  187 (695)
T 2bkl_A          157 GEWSK-VDVIEGGKYATPKWTPDSKGFYYEWL  187 (695)
T ss_dssp             CCBCS-SCCBSCCTTCCCEECTTSSEEEEEEC
T ss_pred             CCCcC-CcccCcccccceEEecCCCEEEEEEe
Confidence            65420 1111111  4666654  46777654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=89.60  E-value=5.9  Score=37.00  Aligned_cols=98  Identities=18%  Similarity=0.237  Sum_probs=67.9

Q ss_pred             cceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc---cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc
Q psy950          263 TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS---SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS  339 (407)
Q Consensus       263 ~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~---~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r  339 (407)
                      ..+.+++|.+.++.++.+-... +.|...++.......   .....+..|++.+.++++..+-+.. ++|.+.++.....
T Consensus       227 ~~v~~v~~sp~~~~~la~g~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D-~~i~iwd~~~~~~  304 (357)
T 4g56_B          227 TIPTSVTWHPEKDDTFACGDET-GNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED-CTVAVLDADFSEV  304 (357)
T ss_dssp             SCEEEEEECTTSTTEEEEEESS-SCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT-SCEEEECTTSCEE
T ss_pred             ccccchhhhhcccceEEEeecc-cceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC-CEEEEEECCCCcE
Confidence            3467889988877777665555 678888876654332   2333788999988887766666666 7899988876543


Q ss_pred             --cccCCCceeEEEEcCCCCeEEEE
Q psy950          340 --ASSNLTNVVGVEFDYADDKILFT  362 (407)
Q Consensus       340 --l~~~l~~P~~iavdp~~g~lywt  362 (407)
                        ....-....+|+..|..+.++.+
T Consensus       305 ~~~~~H~~~V~~vafsP~d~~~l~s  329 (357)
T 4g56_B          305 FRDLSHRDFVTGVAWSPLDHSKFTT  329 (357)
T ss_dssp             EEECCCSSCEEEEEECSSSTTEEEE
T ss_pred             eEECCCCCCEEEEEEeCCCCCEEEE
Confidence              22233567889999877766665

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=89.55  E-value=0.29  Score=45.21  Aligned_cols=34  Identities=24%  Similarity=0.686  Sum_probs=29.1

Q ss_pred             ccccccceecCCCCCCCCcceEEecCCCccccCCCCccccc
Q psy950          190 GGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTM  230 (407)
Q Consensus       190 g~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~  230 (407)
                      ..|+|.|.+..+       ++.|.|..||.|..|+++|...
T Consensus       131 ~~c~~~C~n~~g-------~~~csC~~Gy~L~~d~~~C~~~  164 (286)
T 1nt0_A          131 VPCDHYCHXYLG-------GYYCSCRVGYILHQNKHTCSAL  164 (286)
T ss_dssp             -CCSSEEEEETT-------EEEEECCTTEEECTTSSCEEEC
T ss_pred             ccCCCccccccC-------ceEeecCCCceeccCCCCcccc
Confidence            369999999876       6999999999999999999743

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=89.51  E-value=4.4  Score=37.11  Aligned_cols=61  Identities=15%  Similarity=0.130  Sum_probs=45.4

Q ss_pred             CCcceEEEeCCCCEEEEEEcC---CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEe
Q psy950           33 SANTTSPFSPLPRLLYWIDYG---QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVD   95 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~---~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d   95 (407)
                      .....+++.|...+|+++...   ....|+..++++.....+.....  ..+++..+.+++|+++.
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~  122 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVG  122 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEE
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEE
Confidence            356778999999999888653   23469999998876665554322  77889988888888875

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=89.40  E-value=0.28  Score=31.99  Aligned_cols=16  Identities=25%  Similarity=0.750  Sum_probs=13.9

Q ss_pred             ceEEecCCCccccCCCCccc
Q psy950          209 HYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       209 ~~~C~C~~G~~l~~d~~~C~  228 (407)
                      +|+|.|+.||.    |..|.
T Consensus        27 ~~~C~C~~Gyt----G~~Ce   42 (46)
T 1k36_A           27 QNYCRCEVGYT----GVRCE   42 (46)
T ss_dssp             EEEEEECTTCS----STTSC
T ss_pred             CEEEECCCCCc----cCCCC
Confidence            69999999997    77775

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}

Probab=88.97  E-value=0.21  Score=45.93  Aligned_cols=41  Identities=24%  Similarity=0.646  Sum_probs=31.9

Q ss_pred             CCccCC--CcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          182 NPCFRT--GNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       182 n~C~~~--~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      ++|...  .+.+|+|.|.+..+       ++.|.|+.||.|..|.+.|..
T Consensus       122 ~~C~~~~~~~~~c~~~C~n~~g-------~~~C~C~~Gy~l~~d~~~C~~  164 (278)
T 3dem_A          122 DECKEREDEELSCDHYCHNYIG-------GYYCSCRFGYILHTDNRTCRV  164 (278)
T ss_dssp             CTTTC-----CCCSSEEEEETT-------EEEEECCTTCEECTTSSCEEC
T ss_pred             ccCCCCCCCcccCCcCcCCccC-------CcEEEeCCcceeccCCCCCcc
Confidence            456541  13589999998876       699999999999999999973

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=88.65  E-value=0.22  Score=39.56  Aligned_cols=33  Identities=33%  Similarity=0.811  Sum_probs=26.4

Q ss_pred             CCCCccCCCcccccccceec-CCCCCCCCcceEEecCCCccccC
Q psy950          180 ENNPCFRTGNGGCEQLCFSY-PVEFPQNKLHYKCDCATGTPSAS  222 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~-~~~~~~~~~~~~C~C~~G~~l~~  222 (407)
                      ..++|.   +..|.|.|++. ++       +|+|.|+.||.+..
T Consensus         3 dideC~---~~pC~~~C~~~~~g-------~y~C~C~~Gy~g~~   36 (118)
T 1dx5_I            3 PVDPCF---RANCEYQCQPLDQT-------SYLCVCAEGFAPIP   36 (118)
T ss_dssp             CCCGGG---GCCCSSEEEECSSS-------CEEEECCTTEEEET
T ss_pred             ccccCC---CCCCCCCCCCCCCC-------CEEeECCCCccccC
Confidence            457885   37899999998 55       69999999998653

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=88.65  E-value=0.39  Score=32.19  Aligned_cols=16  Identities=31%  Similarity=1.053  Sum_probs=14.0

Q ss_pred             ceEEecCCCccccCCCCccc
Q psy950          209 HYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       209 ~~~C~C~~G~~l~~d~~~C~  228 (407)
                      +|+|.|+.||.    |..|.
T Consensus        28 ~~~C~C~~G~~----G~~Ce   43 (53)
T 1egf_A           28 SYTCNCVIGYS----GDRCQ   43 (53)
T ss_dssp             CEEEECCTTCC----SSSSC
T ss_pred             CEEEECCCCCc----CCcCC
Confidence            69999999997    77886

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=88.60  E-value=23  Score=36.08  Aligned_cols=111  Identities=6%  Similarity=0.021  Sum_probs=71.3

Q ss_pred             CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCC---CceeEEEeCCCCeEEEEeCC--------CCeE
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGIS---MPRDLTIDMQTHDVYWVDAK--------LDLI  101 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~---~P~glaiD~~~~~lYw~d~~--------~~~I  101 (407)
                      ..+.+++..|...++| ++  ....|...++++.....++...-.   .+..+++.+.+++|.++...        ...|
T Consensus        17 ~~~~~~~~spdg~~~~-~~--~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIY-RE--QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCCBSSSSCBCC-CC--SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             ccccccEEcCCCcEEE-Ee--CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence            3578888888866554 32  234888888887666666653221   47899999999988887532        2678


Q ss_pred             EEEecCCCeEEEEccCCC---CceEEEEeC--CEEEEEeCCCCeEEEEecCC
Q psy950          102 QKISYNGGNRQIIRRNLP---NPMGIAVHK--SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       102 ~~~~~dG~~~~~~~~~~~---~P~~lav~~--~~lYwtd~~~~~I~~~~~~~  148 (407)
                      ...++++...+.+.....   .+..+++..  .+|.++..  +.|+..+..+
T Consensus        94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~  143 (723)
T 1xfd_A           94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVG  143 (723)
T ss_dssp             EEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSS
T ss_pred             EEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC--CeEEEEECCC
Confidence            888988766544432111   144555543  46666644  4677777665

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=88.05  E-value=25  Score=35.82  Aligned_cols=79  Identities=8%  Similarity=-0.077  Sum_probs=56.3

Q ss_pred             CcceEEEeCCCCEEEEEEcCC-------CCeEEEEeCCCCCeEEEEeCCC--CCceeEEEeCCCCeEEEEeCCCCeEEEE
Q psy950           34 ANTTSPFSPLPRLLYWIDYGQ-------YPRIGKSYLDGSKWTSIVSNGI--SMPRDLTIDMQTHDVYWVDAKLDLIQKI  104 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~~~-------~~~I~r~~~dG~~~~~l~~~~~--~~P~glaiD~~~~~lYw~d~~~~~I~~~  104 (407)
                      ...++++.|...+|..+....       ...|...++++...+.+.....  ..+..+++.+.+++|.++..  +.|...
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~  139 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYC  139 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC--CeEEEE
Confidence            378999999999888875421       1588899998776544433211  13667889999988888875  689999


Q ss_pred             ecCCCeEEEE
Q psy950          105 SYNGGNRQII  114 (407)
Q Consensus       105 ~~dG~~~~~~  114 (407)
                      ++++...+.+
T Consensus       140 ~~~~g~~~~~  149 (723)
T 1xfd_A          140 AHVGKQAIRV  149 (723)
T ss_dssp             SSSSSCCEEE
T ss_pred             ECCCCceEEE
Confidence            9887655433

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=88.04  E-value=0.28  Score=34.22  Aligned_cols=16  Identities=38%  Similarity=1.018  Sum_probs=14.1

Q ss_pred             ceEEecCCCccccCCCCccc
Q psy950          209 HYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       209 ~~~C~C~~G~~l~~d~~~C~  228 (407)
                      +|+|.|+.||.    |..|.
T Consensus        31 ~y~C~C~~Gf~----G~~Ce   46 (63)
T 1hae_A           31 RYLCKCQPGFT----GARCT   46 (63)
T ss_dssp             CEEEECCTTEE----STTSC
T ss_pred             CEEEECCCCCc----CCccC
Confidence            69999999997    77885

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=87.89  E-value=14  Score=34.41  Aligned_cols=97  Identities=10%  Similarity=0.103  Sum_probs=67.4

Q ss_pred             ceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc---cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc-
Q psy950          264 NVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS---SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS-  339 (407)
Q Consensus       264 ~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~---~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r-  339 (407)
                      .+.++++.+.++.++.+-... +.|...++.......   +-...+..|++.+.+.++..+-+.. ++|.+.++..... 
T Consensus       216 ~~~~~~~~p~~~~~l~sg~~d-g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D-~~i~vwd~~~~~~~  293 (344)
T 4gqb_B          216 LPTSLAWHPQQSEVFVFGDEN-GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED-CSLAVLDSSLSELF  293 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETT-SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETT-SCEEEECTTCCEEE
T ss_pred             cceeeeecCCCCcceEEeccC-CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC-CeEEEEECCCCcEE
Confidence            466788888888877776666 778888876554332   3233788999988887777776666 7899888776543 


Q ss_pred             -cccCCCceeEEEEcCCCCeEEEE
Q psy950          340 -ASSNLTNVVGVEFDYADDKILFT  362 (407)
Q Consensus       340 -l~~~l~~P~~iavdp~~g~lywt  362 (407)
                       +...-....+++..|...+|+-+
T Consensus       294 ~~~~H~~~V~~v~~sp~~~~llas  317 (344)
T 4gqb_B          294 RSQAHRDFVRDATWSPLNHSLLTT  317 (344)
T ss_dssp             EECCCSSCEEEEEECSSSTTEEEE
T ss_pred             EEcCCCCCEEEEEEeCCCCeEEEE
Confidence             22233567888888887777665

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=86.78  E-value=0.45  Score=30.68  Aligned_cols=16  Identities=31%  Similarity=1.053  Sum_probs=13.8

Q ss_pred             ceEEecCCCccccCCCCccc
Q psy950          209 HYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       209 ~~~C~C~~G~~l~~d~~~C~  228 (407)
                      +|+|.|+.||.    |..|.
T Consensus        25 ~~~C~C~~G~~----G~~Ce   40 (45)
T 1a3p_A           25 SYTCNCVIGYS----GDRCQ   40 (45)
T ss_dssp             SEEEECCTTEE----TTTTC
T ss_pred             CEEEEcCCCCc----CCcCC
Confidence            69999999997    77775

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=86.49  E-value=20  Score=33.11  Aligned_cols=274  Identities=8%  Similarity=0.052  Sum_probs=144.8

Q ss_pred             CCcceEEEeCCCC-EEEEEEcCCCCeEEEEeC----CCCC------eEEEEeCC----------CCCceeEEEeCCCCeE
Q psy950           33 SANTTSPFSPLPR-LLYWIDYGQYPRIGKSYL----DGSK------WTSIVSNG----------ISMPRDLTIDMQTHDV   91 (407)
Q Consensus        33 ~~P~~iavdp~~g-~lywtd~~~~~~I~r~~~----dG~~------~~~l~~~~----------~~~P~glaiD~~~~~l   91 (407)
                      ....++++.|... +|+.....  ..|...++    +...      ....+...          -.....+++.+.++.|
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  123 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEKN--SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI  123 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEETB--TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred             CceEEEEECCCCCcEEEEecCC--ceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence            4578999999987 77666543  36666666    4333      22222221          2257899999977777


Q ss_pred             EEEeCCCCeEEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeE
Q psy950           92 YWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIA  169 (407)
Q Consensus        92 Yw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~  169 (407)
                      +.+. ..+.|...+.+|.....+.........+++.+  ..|+.. ...+.|...+... +  .....+..         
T Consensus       124 ~~~~-~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~-~--~~~~~~~~---------  189 (425)
T 1r5m_A          124 VTGV-ENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISM-DVENVTILWNVIS-G--TVMQHFEL---------  189 (425)
T ss_dssp             EEEE-TTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEE-ETTCCEEEEETTT-T--EEEEEECC---------
T ss_pred             EEEe-CCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEE-ecCCeEEEEECCC-C--cEEEEeec---------
Confidence            6665 45678888877877766655555667888865  344443 3345565555543 1  11111110         


Q ss_pred             EeeecCCCCCCCCCccCCCccc--ccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeec
Q psy950          170 IFDIVNQPPDENNPCFRTGNGG--CEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHL  247 (407)
Q Consensus       170 i~~~~~qp~~~~n~C~~~~ng~--Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l  247 (407)
                          ...+....+.... ...+  ...+++                       .++       ..++.......|.-..+
T Consensus       190 ----~~~~~~~~~~~~~-~~~~~~~~~~~~-----------------------~~~-------~~~~~~~~~g~i~~~d~  234 (425)
T 1r5m_A          190 ----KETGGSSINAENH-SGDGSLGVDVEW-----------------------VDD-------DKFVIPGPKGAIFVYQI  234 (425)
T ss_dssp             ----C----------------CCCBSCCEE-----------------------EET-------TEEEEECGGGCEEEEET
T ss_pred             ----cccCccceeeccc-cCCcceeeEEEE-----------------------cCC-------CEEEEEcCCCeEEEEEc
Confidence                0000000000000 0000  001111                       011       11222233344554444


Q ss_pred             CCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc---cCCCCccEEEEeccCCeEEEEeCC
Q psy950          248 DPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS---SNLTNVVGVEFDYADDKILFTQIR  324 (407)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~---~~~~~~~glAvDwi~~~LYwtd~~  324 (407)
                      ........  .......+.++++.+.++.|+.... . +.|...++.......   .....+..+++.+-+  ++.+-..
T Consensus       235 ~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~  308 (425)
T 1r5m_A          235 TEKTPTGK--LIGHHGPISVLEFNDTNKLLLSASD-D-GTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSM  308 (425)
T ss_dssp             TCSSCSEE--ECCCSSCEEEEEEETTTTEEEEEET-T-SCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEET
T ss_pred             CCCceeee--eccCCCceEEEEECCCCCEEEEEcC-C-CEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeC
Confidence            43221111  1122345778999988886665553 3 568777776544332   223377888888765  6666666


Q ss_pred             CCCeEEEEECCCCcc---cccCCCceeEEEEcCCCCeEEEEeC
Q psy950          325 PWAKIAWIPTTNPSS---ASSNLTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       325 ~~~~I~v~~~~~~~r---l~~~l~~P~~iavdp~~g~lywtd~  364 (407)
                      . +.|.+.++.....   +...-..+..+++.|...+|+-...
T Consensus       309 d-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  350 (425)
T 1r5m_A          309 D-GSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM  350 (425)
T ss_dssp             T-SEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET
T ss_pred             C-CcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC
Confidence            6 7899999876653   2223467889999997666665543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=85.75  E-value=25  Score=33.44  Aligned_cols=99  Identities=12%  Similarity=0.108  Sum_probs=71.0

Q ss_pred             CcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcc-cc---cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCC
Q psy950          262 LTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS-AS---SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNP  337 (407)
Q Consensus       262 ~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~-~~---~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~  337 (407)
                      ...+.+++|.+.++.++.+-... +.|...++..... ..   .....+..|++.+.++.++.+.... ++|.+.++...
T Consensus       277 ~~~v~~i~~~p~~~~~l~tg~~d-g~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d-~~i~iwd~~~~  354 (430)
T 2xyi_A          277 TAEVNCLSFNPYSEFILATGSAD-KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-RRLHVWDLSKI  354 (430)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETT-SEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETT-SCCEEEEGGGT
T ss_pred             CCCeEEEEeCCCCCCEEEEEeCC-CeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCC-CcEEEEeCCCC
Confidence            34577899999888888887777 7899988876332 21   2233788999999888899998888 88999987652


Q ss_pred             --------------ccc--cc-CCCceeEEEEcCCCCeEEEE
Q psy950          338 --------------SSA--SS-NLTNVVGVEFDYADDKILFT  362 (407)
Q Consensus       338 --------------~rl--~~-~l~~P~~iavdp~~g~lywt  362 (407)
                                    ..+  .. ....++.++.+|...+++.+
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s  396 (430)
T 2xyi_A          355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS  396 (430)
T ss_dssp             TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred             ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence                          111  12 23568899999987645544

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=85.31  E-value=24  Score=32.93  Aligned_cols=112  Identities=4%  Similarity=-0.089  Sum_probs=65.5

Q ss_pred             CcceEEEeC-CCCEEEEEEcCCCCeEEEEeCCCC-------CeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEe
Q psy950           34 ANTTSPFSP-LPRLLYWIDYGQYPRIGKSYLDGS-------KWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKIS  105 (407)
Q Consensus        34 ~P~~iavdp-~~g~lywtd~~~~~~I~r~~~dG~-------~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~  105 (407)
                      ...+++++| ...+|+-....  ..|...+++..       .....+.........++..+.+++++++-...+.|...+
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~d--g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  160 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSED--CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD  160 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETT--SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEE
T ss_pred             CEEEEEeCCCCCCEEEEEeCC--CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEE
Confidence            358999999 54455444333  37777777643       222223323346789999998766666666778899988


Q ss_pred             cCCCeE-EEE--ccCCCCceEEEEeC-CEEEEEeCCCCeEEEEecC
Q psy950          106 YNGGNR-QII--RRNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKL  147 (407)
Q Consensus       106 ~dG~~~-~~~--~~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~  147 (407)
                      +..... ..+  .........+++.. +.++.+-...+.|...+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  206 (402)
T 2aq5_A          161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR  206 (402)
T ss_dssp             TTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred             CCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence            875544 344  22334456777754 3333333334455555544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=83.88  E-value=18  Score=33.38  Aligned_cols=83  Identities=12%  Similarity=-0.043  Sum_probs=55.6

Q ss_pred             CCCcceEEEeC-CCCEEEEEEcCCC----CeEEEEeCCCCCeEEEEeCC-CCCceeEEEeCCCCeEEEEeC--CCCe--E
Q psy950           32 RSANTTSPFSP-LPRLLYWIDYGQY----PRIGKSYLDGSKWTSIVSNG-ISMPRDLTIDMQTHDVYWVDA--KLDL--I  101 (407)
Q Consensus        32 ~~~P~~iavdp-~~g~lywtd~~~~----~~I~r~~~dG~~~~~l~~~~-~~~P~glaiD~~~~~lYw~d~--~~~~--I  101 (407)
                      ......+++.| ..++|+++..+..    .+|...+++|...+.+.... ...+..+++.+.+++|+++..  ....  |
T Consensus       187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l  266 (396)
T 3c5m_A          187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI  266 (396)
T ss_dssp             SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred             CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence            34467889999 5666777654322    47999999987766555421 224667899998888888743  2334  9


Q ss_pred             EEEecCCCeEEEE
Q psy950          102 QKISYNGGNRQII  114 (407)
Q Consensus       102 ~~~~~dG~~~~~~  114 (407)
                      ...++++...+.+
T Consensus       267 ~~~d~~~g~~~~l  279 (396)
T 3c5m_A          267 YKANPETLENEEV  279 (396)
T ss_dssp             EEECTTTCCEEEE
T ss_pred             EEEECCCCCeEEe
Confidence            9999876655443

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=83.03  E-value=0.68  Score=31.11  Aligned_cols=16  Identities=31%  Similarity=1.024  Sum_probs=14.2

Q ss_pred             ceEEecCCCccccCCCCccc
Q psy950          209 HYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       209 ~~~C~C~~G~~l~~d~~~C~  228 (407)
                      +|+|.|+.||.    |..|.
T Consensus        28 ~~~C~C~~Gyt----G~~Ce   43 (53)
T 1nql_B           28 KYACNCVVGYI----GERCQ   43 (53)
T ss_dssp             EEEEEECTTEE----STTSC
T ss_pred             CEEEecCCCCc----CCCCC
Confidence            69999999997    78886

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=82.43  E-value=34  Score=32.43  Aligned_cols=243  Identities=8%  Similarity=0.004  Sum_probs=131.4

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCC-----------CCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCe
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDG-----------SKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL  100 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG-----------~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~  100 (407)
                      ...+..|++.|..+.++.+-... ..|...+++.           .....+. ..-..+.+|+..+.+..++.+-...+.
T Consensus       128 ~~~v~~l~~~p~~~~~lat~~~d-g~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~  205 (430)
T 2xyi_A          128 EGEVNRARYMPQNACVIATKTPS-SDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSASDDHT  205 (430)
T ss_dssp             SSCCSEEEEETTEEEEEEEECSS-SCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred             CCcEEEEEECCCCCcEEEEECCC-CcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence            45689999999877777665433 4777777763           2223332 223467899999987746666667788


Q ss_pred             EEEEecCCCeE--------EEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEE
Q psy950          101 IQKISYNGGNR--------QIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAI  170 (407)
Q Consensus       101 I~~~~~dG~~~--------~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i  170 (407)
                      |...++.....        ..+.........+++..  +.++.+....+.|...+... +..  .        .+  +..
T Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~-~~~--~--------~~--~~~  272 (430)
T 2xyi_A          206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN-NNT--S--------KP--SHT  272 (430)
T ss_dssp             EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC-SCS--S--------SC--SEE
T ss_pred             EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC-CCC--C--------cc--eeE
Confidence            88888865211        12223333456677754  55666655556665555443 100  0        00  000


Q ss_pred             eeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeee-ecccceEEeecCC
Q psy950          171 FDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVF-STRTEIRALHLDP  249 (407)
Q Consensus       171 ~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~-s~~~~I~~i~l~~  249 (407)
                      +..              ..+...++++.                       +++..      +++. +....|+-..+..
T Consensus       273 ~~~--------------~~~~v~~i~~~-----------------------p~~~~------~l~tg~~dg~v~vwd~~~  309 (430)
T 2xyi_A          273 VDA--------------HTAEVNCLSFN-----------------------PYSEF------ILATGSADKTVALWDLRN  309 (430)
T ss_dssp             EEC--------------CSSCEEEEEEC-----------------------SSCTT------EEEEEETTSEEEEEETTC
T ss_pred             eec--------------CCCCeEEEEeC-----------------------CCCCC------EEEEEeCCCeEEEEeCCC
Confidence            000              01111222221                       11110      0111 1122344344433


Q ss_pred             CCCeeeeEee-cCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCc--------------ccc---cCCCCccEEEE
Q psy950          250 TLTAVPFKTV-SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS--------------SAS---SNLTNVVGVEF  311 (407)
Q Consensus       250 ~~~~~~~~~~-~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~--------------~~~---~~~~~~~glAv  311 (407)
                      ...  ++..+ .....+.++.+.+.++.++.+-... +.|...++....              ...   +....|..+++
T Consensus       310 ~~~--~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  386 (430)
T 2xyi_A          310 LKL--KLHSFESHKDEIFQVQWSPHNETILASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  386 (430)
T ss_dssp             TTS--CSEEEECCSSCEEEEEECSSCTTEEEEEETT-SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred             CCC--CeEEeecCCCCEEEEEECCCCCCEEEEEeCC-CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence            111  11111 1234578899999888888887777 777777765411              111   22336889999


Q ss_pred             eccCCeEEEEeCCCCCeEEEEECCC
Q psy950          312 DYADDKILFTQIRPWAKIAWIPTTN  336 (407)
Q Consensus       312 Dwi~~~LYwtd~~~~~~I~v~~~~~  336 (407)
                      .+-+..++.+.+.. +.|.+.+++.
T Consensus       387 ~p~~~~~l~s~s~d-g~i~iw~~~~  410 (430)
T 2xyi_A          387 NPNEPWIICSVSED-NIMQVWQMAE  410 (430)
T ss_dssp             CSSSTTEEEEEETT-SEEEEEEECH
T ss_pred             CCCCCCEEEEEECC-CCEEEeEccc
Confidence            88777677777777 7888877553

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=82.22  E-value=0.42  Score=41.07  Aligned_cols=40  Identities=28%  Similarity=0.399  Sum_probs=29.8

Q ss_pred             CCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccC-CCCcccc
Q psy950          181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSAS-DPKKCTT  229 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~-d~~~C~~  229 (407)
                      .+||.  +++.|.+.|.+.++       +|+|.|+.||.+.+ |++.|..
T Consensus        96 ~~~C~--~~g~C~~~~~~~~g-------~~~C~C~~Gy~g~~~~~~~C~~  136 (186)
T 1z1y_A           96 YXNCG--ESGECIVEYLSEIQ-------SAGCSCAIGXVPNPEDEXXCTX  136 (186)
T ss_dssp             TCCCC--TTEEEEEEEETTEE-------EEEEEECTEEEEETTTTTEEEE
T ss_pred             CCCCC--CCCEEeeCCcCCCC-------CceEECCCCCcccCCCCCcceE
Confidence            35665  36788877777665       69999999998655 7788863

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=82.13  E-value=31  Score=31.77  Aligned_cols=74  Identities=7%  Similarity=-0.132  Sum_probs=50.9

Q ss_pred             CcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE
Q psy950           34 ANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR  111 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~  111 (407)
                      ...++++.|...+|+-....  ..|...+.+|.....+.. .......+++.+.+..|+.+. ..+.|...++.....
T Consensus       110 ~v~~~~~s~~~~~l~~~~~d--g~i~i~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~  183 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVEN--GELRLWNKTGALLNVLNF-HRAPIVSVKWNKDGTHIISMD-VENVTILWNVISGTV  183 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETT--SCEEEEETTSCEEEEECC-CCSCEEEEEECTTSSEEEEEE-TTCCEEEEETTTTEE
T ss_pred             ceEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCeeeeccC-CCccEEEEEECCCCCEEEEEe-cCCeEEEEECCCCcE
Confidence            46899999987777766554  356666777765554432 334678999999877777665 467788888865443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=82.04  E-value=36  Score=32.42  Aligned_cols=70  Identities=11%  Similarity=0.132  Sum_probs=45.4

Q ss_pred             CceeEEEeCCCCeEEEEeCCCCeEEEEecC---CCeEEEEc--cCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCC
Q psy950           78 MPRDLTIDMQTHDVYWVDAKLDLIQKISYN---GGNRQIIR--RNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus        78 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~d---G~~~~~~~--~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~  148 (407)
                      ...++++.+.++.||.+-...+.|...+++   |...+.+.  .....+.++++.+  ..|+..+. .+.|...+...
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~g~v~~~~~~~  180 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK-FGDVYSIDINS  180 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSEEEEEETTS
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC-CCcEEEEecCC
Confidence            367899999988887777677888888776   34444443  2234567888865  35555543 45566665543

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=81.40  E-value=3.8  Score=41.59  Aligned_cols=65  Identities=5%  Similarity=-0.082  Sum_probs=48.3

Q ss_pred             CCCCcceEEEeCCCCEEEE-EEcCC----------CCeEEEEeCCCCCeEEEEeC-CCCCceeEEEeCCCCeEEEEeC
Q psy950           31 FRSANTTSPFSPLPRLLYW-IDYGQ----------YPRIGKSYLDGSKWTSIVSN-GISMPRDLTIDMQTHDVYWVDA   96 (407)
Q Consensus        31 ~~~~P~~iavdp~~g~lyw-td~~~----------~~~I~r~~~dG~~~~~l~~~-~~~~P~glaiD~~~~~lYw~d~   96 (407)
                      .+..|-.|++|+. |.||+ ||...          ...+++.+-+....+.++.. ....|+||++.+..+.||++--
T Consensus       474 ~fnsPDnL~fd~~-G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ  550 (592)
T 4a9v_A          474 MFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             CCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred             ccCCCCceEECCC-CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence            3678999999987 88999 87531          22788888864444445542 3457999999999999999853

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=81.30  E-value=34  Score=31.63  Aligned_cols=99  Identities=9%  Similarity=0.103  Sum_probs=63.3

Q ss_pred             CcceEEEEEEcCCCEEEEEEecCCc---eEEEEeCCCCc-ccc--c--CCCCccEEEEeccCCeEEEEeCCCCCeEEEEE
Q psy950          262 LTNVVGVEFDYADDKILFTQIRPWA---KIAWIPTTNPS-SAS--S--NLTNVVGVEFDYADDKILFTQIRPWAKIAWIP  333 (407)
Q Consensus       262 ~~~~~ald~d~~~~~lywsd~~~~~---~I~~~~~~~~~-~~~--~--~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~  333 (407)
                      ...+.++.+.+.+..++.+-... +   .|...++.... ...  .  ....+..+++.+..++++.+-... ++|.+.+
T Consensus       214 ~~~v~~~~~~~~~~~~l~~~~~d-~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-g~v~~wd  291 (416)
T 2pm9_A          214 KQQLSVVEWHPKNSTRVATATGS-DNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD-NTVLLWN  291 (416)
T ss_dssp             CCCEEEEEECSSCTTEEEEEECC-SSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS-SEEEEEC
T ss_pred             CCceEEEEECCCCCCEEEEEECC-CCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC-CCEEEee
Confidence            34577899998876666655544 4   78888877542 211  2  223678888887556666666666 7899998


Q ss_pred             CCCCcc---cccCCCceeEEEEcCCCCeEEEE
Q psy950          334 TTNPSS---ASSNLTNVVGVEFDYADDKILFT  362 (407)
Q Consensus       334 ~~~~~r---l~~~l~~P~~iavdp~~g~lywt  362 (407)
                      +.....   +...-.....++..|....++.+
T Consensus       292 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s  323 (416)
T 2pm9_A          292 PESAEQLSQFPARGNWCFKTKFAPEAPDLFAC  323 (416)
T ss_dssp             SSSCCEEEEEECSSSCCCCEEECTTCTTEEEE
T ss_pred             CCCCccceeecCCCCceEEEEECCCCCCEEEE
Confidence            876543   22233566788888876344444

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=81.26  E-value=29  Score=30.81  Aligned_cols=260  Identities=11%  Similarity=0.060  Sum_probs=140.6

Q ss_pred             CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCC----eEEEEe-CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecC
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSK----WTSIVS-NGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN  107 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~----~~~l~~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~d  107 (407)
                      ....++++.|...+|+-..   ...|...+++...    ...+.. ..-.....+++.+.++.|+.+. ..+.|...+++
T Consensus        52 ~~v~~~~~~~~~~~l~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~  127 (337)
T 1gxr_A           52 EVVCAVTISNPTRHVYTGG---KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-EASTLSIWDLA  127 (337)
T ss_dssp             SCCCEEEECSSSSEEEEEC---BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE-SSSEEEEEECC
T ss_pred             CceEEEEEecCCcEEEEcC---CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEECC
Confidence            3468999999887777665   2478888876443    122221 2234578999999777666654 46788888887


Q ss_pred             CCeEE---EEccCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCC
Q psy950          108 GGNRQ---IIRRNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNP  183 (407)
Q Consensus       108 G~~~~---~~~~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~  183 (407)
                      .....   .+.........+++.+ +..+.+-...+.|...+... +  ....             .+.       .   
T Consensus       128 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~--~~~~-------------~~~-------~---  181 (337)
T 1gxr_A          128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-Q--TLVR-------------QFQ-------G---  181 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-T--EEEE-------------EEC-------C---
T ss_pred             CCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-C--ceee-------------eee-------c---
Confidence            65532   2223344456777765 33333333344555555443 1  1111             110       0   


Q ss_pred             ccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec-ccceEEeecCCCCCeeeeEeecCC
Q psy950          184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST-RTEIRALHLDPTLTAVPFKTVSNL  262 (407)
Q Consensus       184 C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~-~~~I~~i~l~~~~~~~~~~~~~~~  262 (407)
                          ..+....+++                .|       ++.       +|+.+. ...|.-..+....   ........
T Consensus       182 ----~~~~i~~~~~----------------~~-------~~~-------~l~~~~~dg~i~~~d~~~~~---~~~~~~~~  224 (337)
T 1gxr_A          182 ----HTDGASCIDI----------------SN-------DGT-------KLWTGGLDNTVRSWDLREGR---QLQQHDFT  224 (337)
T ss_dssp             ----CSSCEEEEEE----------------CT-------TSS-------EEEEEETTSEEEEEETTTTE---EEEEEECS
T ss_pred             ----ccCceEEEEE----------------CC-------CCC-------EEEEEecCCcEEEEECCCCc---eEeeecCC
Confidence                0011111111                11       110       111111 1223333332211   11112233


Q ss_pred             cceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCccc
Q psy950          263 TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA  340 (407)
Q Consensus       263 ~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~rl  340 (407)
                      ..+.++.+.+.++.++.....  +.|...++.......  .....+.++++.+-++.|+.... . +.|.+.++.....+
T Consensus       225 ~~v~~~~~s~~~~~l~~~~~~--~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~~~~~~~~~~~  300 (337)
T 1gxr_A          225 SQIFSLGYCPTGEWLAVGMES--SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK-D-NLLNAWRTPYGASI  300 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETT--SCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET-T-SEEEEEETTTCCEE
T ss_pred             CceEEEEECCCCCEEEEEcCC--CcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecC-C-CcEEEEECCCCeEE
Confidence            456788888888887766543  458888877655433  22337889999887776655444 4 68999998766542


Q ss_pred             --ccCCCceeEEEEcCCCCeEEEEe
Q psy950          341 --SSNLTNVVGVEFDYADDKILFTQ  363 (407)
Q Consensus       341 --~~~l~~P~~iavdp~~g~lywtd  363 (407)
                        ...-..+.++++.|...+|+-..
T Consensus       301 ~~~~~~~~v~~~~~s~~~~~l~~~~  325 (337)
T 1gxr_A          301 FQSKESSSVLSCDISVDDKYIVTGS  325 (337)
T ss_dssp             EEEECSSCEEEEEECTTSCEEEEEE
T ss_pred             EEecCCCcEEEEEECCCCCEEEEec
Confidence              23446778888888776665543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=80.91  E-value=54  Score=33.70  Aligned_cols=94  Identities=14%  Similarity=0.017  Sum_probs=63.5

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR  111 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~  111 (407)
                      -....+++++|...+|..+...  ..|...++........+...-.....++..+.++.|..+.. .+.|...+++....
T Consensus        13 ~~~v~~i~~sp~~~~la~~~~~--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~~   89 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTLYS--GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-DFRIRVFNYNTGEK   89 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEETT--SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-TSEEEEEETTTCCE
T ss_pred             CCceEEEEECCCCCEEEEEeCC--CEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCcE
Confidence            4567999999998888877643  47888887644333333333346789999998888777764 67888888864443


Q ss_pred             -EEEccCCCCceEEEEeC
Q psy950          112 -QIIRRNLPNPMGIAVHK  128 (407)
Q Consensus       112 -~~~~~~~~~P~~lav~~  128 (407)
                       ..+.........+++.+
T Consensus        90 ~~~~~~~~~~v~~~~~s~  107 (814)
T 3mkq_A           90 VVDFEAHPDYIRSIAVHP  107 (814)
T ss_dssp             EEEEECCSSCEEEEEECS
T ss_pred             EEEEecCCCCEEEEEEeC
Confidence             44444444566777765

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=80.35  E-value=1.2  Score=36.00  Aligned_cols=32  Identities=25%  Similarity=0.703  Sum_probs=23.3

Q ss_pred             CCCCccCCCcccccc--cceecCCCCCCCCcceEEecCCCcc
Q psy950          180 ENNPCFRTGNGGCEQ--LCFSYPVEFPQNKLHYKCDCATGTP  219 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~--lC~~~~~~~~~~~~~~~C~C~~G~~  219 (407)
                      ..++|.. ....|.+  .|++.++       +|+|.|+.||.
T Consensus         4 dideC~~-~~~~C~~~g~C~~~~g-------~~~C~C~~Gy~   37 (135)
T 2vj3_A            4 DVDECSL-GANPCEHAGKCINTLG-------SFECQCLQGYT   37 (135)
T ss_dssp             CCCTTTS-SSCSSSTTCEEEECSS-------SEEEECCTTEE
T ss_pred             ccccccC-CCCCCCCCCEeECCCC-------CEEEECCCCCc
Confidence            3466764 3456765  7888765       59999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	407
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	1e-19
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	8e-09
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	2e-07
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	3e-07
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	3e-19
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	2e-06
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	2e-05
d1rfnb_	57	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	9e-08
d2bz6l1	53	g.3.11.1 (L:90-142) Coagulation factor VIIa {Human	1e-07
d2p3ua1	51	g.3.11.1 (A:87-137) Factor X, N-terminal module {H	8e-07
d1ijqa2	50	g.3.11.1 (A:643-692) Low density lipoprotein (LDL)	1e-06
d1kigl_	51	g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo	2e-06
d1autl2	50	g.3.11.1 (L:97-146) Activated protein c (autoproth	1e-05
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	2e-05
d1nzia2	42	g.3.11.1 (A:118-159) Complement C1S component {Hum	3e-05
d1dx5i1	43	g.3.11.1 (I:345-387) Thrombomodulin, different EGF	4e-04
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	5e-04
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	0.002
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	0.003

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.1 bits (212), Expect = 1e-19
 Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 6/137 (4%)

Query: 44  PRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQK 103
              +YW D+G   +I K  L+G    S+V+  I  P  +T+D+ +  +YWVD+KL  I  
Sbjct: 131 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190

Query: 104 ISYNGGNRQIIRRN---LPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
           I  NGGNR+ I  +   L +P  +AV +  V+W D     ++ A++L  +++ L   +  
Sbjct: 191 IDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL---LAE 247

Query: 161 GLSGLRDIAIFDIVNQP 177
            L    D+ +F  + QP
Sbjct: 248 NLLSPEDMVLFHNLTQP 264

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 8e-09
 Identities = 45/267 (16%), Positives = 91/267 (34%), Gaps = 26/267 (9%)

Query: 52  YGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN- 110
           +     + K  LD S++TS++   +     L  ++ ++ +YW D    +I     +  + 
Sbjct: 6   FTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 64

Query: 111 ----RQIIRRNLPNPMGIAVH--KSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSG 164
                 +I R++  P G+AV    S++YW D  L TV  A    +  +   T  R   S 
Sbjct: 65  VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD---TKGVKRKTLFRENGSK 121

Query: 165 LRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDP 224
            R I +        D  +      + G         +           +         D 
Sbjct: 122 PRAIVV--------DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 173

Query: 225 KKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRP 284
               +   Y V S    I ++ ++        +    L +   +     +DK+ +T I  
Sbjct: 174 ---LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN 228

Query: 285 WA--KIAWIPTTNPSSASSNLTNVVGV 309
            A      +  ++ +  + NL +   +
Sbjct: 229 EAIFSANRLTGSDVNLLAENLLSPEDM 255

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 2e-07
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 6/137 (4%)

Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTS----IVSNGISMPRDLTIDMQTHDVYWVD 95
                  +YW D  Q   I  + LD +   S    ++S  I  P  L +D    ++YW D
Sbjct: 37  TEVASNRIYWSDLSQ-RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD 95

Query: 96  AKLDLIQKISYNGGN-RQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITL 154
           + L  +      G   + + R N   P  I V     +    +  T  K  K     + +
Sbjct: 96  SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 155

Query: 155 PTPIRTGLSGLRDIAIF 171
            + +   +     I + 
Sbjct: 156 YSLVTENIQWPNGITLD 172

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 3e-07
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 233 YLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWA-KIAWI 291
           YL F+ R E+R + LD +        + NL NVV ++ + A ++I ++ +         +
Sbjct: 3   YLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL 59

Query: 292 PTTNPSSA-----SSNLTNVVGVEFDYADDKILFT 321
              +  S+     S ++    G+  D+    I +T
Sbjct: 60  DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT 94

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.9 bits (209), Expect = 3e-19
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 1/121 (0%)

Query: 40  FSPLPRLLYWIDYGQ-YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKL 98
             P+   LYW D+ +  P+I  S++DG+    +  + + +P  LT D  +  + WVDA  
Sbjct: 129 TDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT 188

Query: 99  DLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
              + ++     R+ +   L  P  +  +  ++Y+ D    +V       S  +    P 
Sbjct: 189 HRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPH 248

Query: 159 R 159
           +
Sbjct: 249 K 249

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 10/138 (7%)

Query: 40  FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
              L R ++W D     RI  + +DG++   +   G+  PR +  D    ++YW D   D
Sbjct: 86  LDHLGRTIFWTDSQLD-RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD 144

Query: 100 --LIQKISYNGGNRQI---IRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITL 154
              I+    +G NR+I       LPN +      S + WVD         +         
Sbjct: 145 NPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK- 203

Query: 155 PTPIRTGLSGLRDIAIFD 172
              +  GL     +  + 
Sbjct: 204 ---VLEGLQYPFAVTSYG 218

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 233 YLVFSTRTEIRALHLDP-TLTAVPFKT--VSNLTNVVGVEFDYADDKILFTQIRPWA--K 287
           +L+F+   +I  L L+  T+     K         ++G+ FD  D  + +T I   +  +
Sbjct: 3   HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62

Query: 288 IAWIPTTNPSSASSNLTNVVGVEFDYADDKI 318
            +       +    +L +  G+  D+    I
Sbjct: 63  ASLHGGEPTTIIRQDLGSPEGIALDHLGRTI 93

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (110), Expect = 9e-08
 Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 6/47 (12%)

Query: 187 TGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
             NG CEQ C +             C C  G   A + K C     +
Sbjct: 5   IKNGRCEQFCKNSA------DNKVVCSCTEGYRLAENQKSCEPAVPF 45

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 6/47 (12%)

Query: 187 TGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
             NGGCEQ C  +            C C  G    +D   CT   EY
Sbjct: 4   NENGGCEQYCSDHTGT------KRSCRCHEGYSLLADGVSCTPTVEY 44

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 8e-07
 Identities = 13/47 (27%), Positives = 15/47 (31%), Gaps = 7/47 (14%)

Query: 187 TGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
             NG C+Q C               C CA G   A + K C     Y
Sbjct: 5   LDNGDCDQFCHEEQN-------SVVCSCARGYTLADNGKACIPTGPY 44

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 182 NPC--FRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT 229
           N C      NGGC+ LC   P +   +   + C C  G   A D + C T
Sbjct: 2   NWCERTTLSNGGCQYLCLPAP-QINPHSPKFTCACPDGMLLARDMRSCLT 50

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 7/47 (14%)

Query: 187 TGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
             NGGC+Q C              +C CA G     D K C + + +
Sbjct: 3   LDNGGCDQFCREERS-------EVRCSCAHGYVLGDDSKSCVSTERF 42

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 7/47 (14%)

Query: 187 TGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
             NGGC   C              +C CA G     D  +C    ++
Sbjct: 4   LDNGGCTHYCLEEVG-------WRRCSCAPGYKLGDDLLQCHPAVKF 43

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 9/46 (19%)

Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC 227
           N C    NGGC  +C    +        Y+C C  G       ++C
Sbjct: 3   NEC-LDNNGGCSHVCNDLKI-------GYECLCPDGF-QLVAQRRC 39

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 3e-05
 Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 7/47 (14%)

Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT 228
           N C    +  C   C ++          Y C C        D K C 
Sbjct: 1   NECTDFVDVPCSHFCNNFIG-------GYFCSCPPEYFLHDDMKNCG 40

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 10/47 (21%)

Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATG-TPSASDPKKC 227
           +PCFR     CE  C       P ++  Y C CA G  P   +P +C
Sbjct: 5   DPCFRAN---CEYQCQ------PLDQTSYLCVCAEGFAPIPHEPHRC 42

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 5e-04
 Identities = 12/46 (26%), Positives = 14/46 (30%), Gaps = 9/46 (19%)

Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC 227
           + C       C QLC +           YKC C  G       K C
Sbjct: 2   DEC--QDPDTCSQLCVNLEG-------GYKCQCEEGFQLDPHTKAC 38

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 10/50 (20%), Positives = 13/50 (26%), Gaps = 7/50 (14%)

Query: 179 DENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT 228
             +          C+ LC +Y          Y C C  G     D   C 
Sbjct: 9   SRSKSGEEDPQPQCQHLCHNYVG-------GYFCSCRPGYELQEDRHSCQ 51

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (75), Expect = 0.003
 Identities = 9/47 (19%), Positives = 10/47 (21%), Gaps = 8/47 (17%)

Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT 228
           N C           C + P         Y CDC            C 
Sbjct: 4   NEC-LDPTTCISGNCVNTPG-------SYICDCPPDFELNPTRVGCV 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	407
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.97
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.97
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.79
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.72
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.56
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.55
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.49
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.4
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.26
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.26
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.24
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.19
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	99.19
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.16
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	99.12
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	99.08
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	99.05
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	99.04
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	99.04
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	99.02
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	98.98
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.9
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.87
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.87
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.86
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.8
d1nt0a3	45	Mannose-binding protein associated serine protease	98.76
d1szba2	45	Mannose-binding protein associated serine protease	98.76
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.64
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.41
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.39
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.38
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.35
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.22
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	98.22
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.74
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.73
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.63
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.63
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.58
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.44
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.3
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.12
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.11
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.05
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.63
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.44
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.43
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	96.42
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	95.88
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	95.71
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.71
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.31
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	95.18
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	95.03
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	94.88
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.73
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	94.56
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	94.5
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	94.33
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	94.29
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	94.28
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	93.77
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	93.42
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	93.29
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	92.55
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	92.23
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	92.14
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	92.12
d1dx5i2	35	Thrombomodulin, different EGF-like domains {Human	91.83
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	91.6
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	90.95
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	89.25
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	88.73
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	87.8
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	87.56
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	86.98
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	85.23
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	84.0
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	80.59
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	80.28

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.2e-29  Score=236.18  Aligned_cols=239  Identities=18%  Similarity=0.318  Sum_probs=193.4

Q ss_pred             EEEEEEeeee----ecCCcc-----eEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCc
Q psy950            9 SLIWAIRLAL----RLLKKK-----KKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMP   79 (407)
Q Consensus         9 ~~~~s~~~~~----~~~~~~-----~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P   79 (407)
                      |||||.+..+    +++...     ...+......+.+|++|+.+++|||+|.... +|.|+++||+.+++++..++..|
T Consensus         3 fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~-~I~~~~l~g~~~~~v~~~~~~~p   81 (263)
T d1npea_           3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEP-SIGRASLHGGEPTTIIRQDLGSP   81 (263)
T ss_dssp             EEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTT-EEEEEESSSCCCEEEECTTCCCE
T ss_pred             EEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCC-eEEEEEcccCCcEEEEEeccccc
Confidence            8999988777    454432     2334444556789999999999999999875 99999999999999998888899


Q ss_pred             eeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEeC--CEEEEEeCCCC--eEEEEecCCCCCCcc
Q psy950           80 RDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVHK--SDVYWVDRNLR--TVYKASKLASTNITL  154 (407)
Q Consensus        80 ~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~--~~lYwtd~~~~--~I~~~~~~~~g~~~~  154 (407)
                      .|||+|+.+++|||+|...++|++++++|..++++. ..+.+|.+|++++  +.|||+++...  +|+++++++ .   .
T Consensus        82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG-~---~  157 (263)
T d1npea_          82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-T---N  157 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-C---C
T ss_pred             cEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCC-C---C
Confidence            999999999999999999999999999999987765 5679999999986  89999998654  577777765 1   1


Q ss_pred             cEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceee
Q psy950          155 PTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYL  234 (407)
Q Consensus       155 ~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~L  234 (407)
                      .+.+.                                                                           
T Consensus       158 ~~~i~---------------------------------------------------------------------------  162 (263)
T d1npea_         158 RRILA---------------------------------------------------------------------------  162 (263)
T ss_dssp             CEEEE---------------------------------------------------------------------------
T ss_pred             ceeee---------------------------------------------------------------------------
Confidence            11110                                                                           


Q ss_pred             eeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc---cCCCCccEEEE
Q psy950          235 VFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS---SNLTNVVGVEF  311 (407)
Q Consensus       235 l~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~---~~~~~~~glAv  311 (407)
                                              ...+..|.+|++|+.+++|||+|... ++|.+++++|.....   ++. .|.|||+
T Consensus       163 ------------------------~~~~~~P~glaiD~~~~~lYw~d~~~-~~I~~~~~~g~~~~~v~~~~~-~P~~lav  216 (263)
T d1npea_         163 ------------------------QDNLGLPNGLTFDAFSSQLCWVDAGT-HRAECLNPAQPGRRKVLEGLQ-YPFAVTS  216 (263)
T ss_dssp             ------------------------CTTCSCEEEEEEETTTTEEEEEETTT-TEEEEEETTEEEEEEEEECCC-SEEEEEE
T ss_pred             ------------------------eecccccceEEEeecCcEEEEEeCCC-CEEEEEECCCCCeEEEECCCC-CcEEEEE
Confidence                                    00122356899999999999999988 899999999976554   666 8999999


Q ss_pred             eccCCeEEEEeCCCCCeEEEEECCCCcc---cc-cCCCceeEEEEcCCC
Q psy950          312 DYADDKILFTQIRPWAKIAWIPTTNPSS---AS-SNLTNVVGVEFDYAD  356 (407)
Q Consensus       312 Dwi~~~LYwtd~~~~~~I~v~~~~~~~r---l~-~~l~~P~~iavdp~~  356 (407)
                      +  .++|||||... ++|.++++.+...   +. ....+|.||+|-+.+
T Consensus       217 ~--~~~lYwtd~~~-~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~~  262 (263)
T d1npea_         217 Y--GKNLYYTDWKT-NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (263)
T ss_dssp             E--TTEEEEEETTT-TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             E--CCEEEEEECCC-CEEEEEECCCCccceEECCCCCCCcceEEEeCCC
Confidence            8  89999999999 8999999986643   22 466899999997653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-29  Score=233.81  Aligned_cols=238  Identities=18%  Similarity=0.263  Sum_probs=189.1

Q ss_pred             ccEEEEEEeeeee----cCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCC----eEEEEeCCCCC
Q psy950            7 LASLIWAIRLALR----LLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSK----WTSIVSNGISM   78 (407)
Q Consensus         7 ~~~~~~s~~~~~~----~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~----~~~l~~~~~~~   78 (407)
                      .||||||.+..++    +++....++ .++..|.+|++|+.+++|||+|.... .|.|+++||.+    .++++..++..
T Consensus         1 ~~fLl~s~~~~I~~~~l~~~~~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~-~I~~~~l~~~~~~~~~~~~~~~~~~~   78 (266)
T d1ijqa1           1 IAYLFFTNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQR-MICSTQLDRAHGVSSYDTVISRDIQA   78 (266)
T ss_dssp             CCEEEEECBSSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTT-EEEEEEC--------CEEEECSSCSC
T ss_pred             CCEEEEECCCeEEEEECCCCcceeee-CCCCceEEEEEEeCCCEEEEEECCCC-EEEEEEecCCCCCcceEEEEeCCCCC
Confidence            3899999776554    555555554 57889999999999999999998875 99999999854    56677778889


Q ss_pred             ceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEeC--CEEEEEeCCCC-eEEEEecCCCCCCcc
Q psy950           79 PRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVHK--SDVYWVDRNLR-TVYKASKLASTNITL  154 (407)
Q Consensus        79 P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~--~~lYwtd~~~~-~I~~~~~~~~g~~~~  154 (407)
                      |.|||+|+.++.|||+|...++|++++++|..++.+. ..+.+|.+|+++.  +.|||+++... +|+|+++++ .   .
T Consensus        79 p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG-s---~  154 (266)
T d1ijqa1          79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-V---D  154 (266)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-C---C
T ss_pred             cceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC-C---c
Confidence            9999999999999999999999999999999986655 6788999999985  89999998754 788888876 1   1


Q ss_pred             cEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceee
Q psy950          155 PTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYL  234 (407)
Q Consensus       155 ~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~L  234 (407)
                      .+.+.            .                                                              
T Consensus       155 ~~~l~------------~--------------------------------------------------------------  160 (266)
T d1ijqa1         155 IYSLV------------T--------------------------------------------------------------  160 (266)
T ss_dssp             EEEEE------------C--------------------------------------------------------------
T ss_pred             eeccc------------c--------------------------------------------------------------
Confidence            11110            0                                                              


Q ss_pred             eeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc------cCCCCccE
Q psy950          235 VFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS------SNLTNVVG  308 (407)
Q Consensus       235 l~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~------~~~~~~~g  308 (407)
                                               ..+..+.+|++|+.+++|||+|... ++|.+++++|..+..      .+. .|.|
T Consensus       161 -------------------------~~~~~p~gl~iD~~~~~lYw~d~~~-~~I~~~~~dG~~~~~~~~~~~~~~-~p~~  213 (266)
T d1ijqa1         161 -------------------------ENIQWPNGITLDLLSGRLYWVDSKL-HSISSIDVNGGNRKTILEDEKRLA-HPFS  213 (266)
T ss_dssp             -------------------------SSCSCEEEEEEETTTTEEEEEETTT-TEEEEEETTSCSCEEEEECTTTTS-SEEE
T ss_pred             -------------------------cccceeeEEEeeccccEEEEecCCc-CEEEEEECCCCCEEEEEeCCCccc-ccEE
Confidence                                     0112245788899999999999998 899999999976443      344 7899


Q ss_pred             EEEeccCCeEEEEeCCCCCeEEEEECCCCc---ccccCCCceeEEEE-cC
Q psy950          309 VEFDYADDKILFTQIRPWAKIAWIPTTNPS---SASSNLTNVVGVEF-DY  354 (407)
Q Consensus       309 lAvDwi~~~LYwtd~~~~~~I~v~~~~~~~---rl~~~l~~P~~iav-dp  354 (407)
                      ||++  .++|||+|... ++|.++++.+..   .+..++..|.+|+| ||
T Consensus       214 lav~--~~~ly~td~~~-~~I~~~~~~~g~~~~~~~~~~~~p~~i~v~~~  260 (266)
T d1ijqa1         214 LAVF--EDKVFWTDIIN-EAIFSANRLTGSDVNLLAENLLSPEDMVLFHN  260 (266)
T ss_dssp             EEEE--TTEEEEEETTT-TEEEEEETTTCCCCEEEECSCSCCCCEEEESG
T ss_pred             EEEE--CCEEEEEECCC-CeEEEEECCCCcceEEEEcCCCCceEEEEECC
Confidence            9999  79999999999 899999977653   26678889999987 44

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.5e-30  Score=238.88  Aligned_cols=162  Identities=30%  Similarity=0.534  Sum_probs=149.8

Q ss_pred             EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEE
Q psy950           14 IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw   93 (407)
                      |.++.++|...++++...+.+|++|++||.+|+|||+|++..++|+|++|||+++++++..++..|+||++|+.+++|||
T Consensus       101 I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         101 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             EEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             EEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEE
Confidence            56788889998999999999999999999999999999998789999999999999999888999999999999999999


Q ss_pred             EeCCCCeEEEEecCCCeEEEEc---cCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEE
Q psy950           94 VDAKLDLIQKISYNGGNRQIIR---RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAI  170 (407)
Q Consensus        94 ~d~~~~~I~~~~~dG~~~~~~~---~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i  170 (407)
                      +|...++|++++++|++++++.   ..+.+|++|++++++|||+|+..++|+++++.+ |  ...+.+..++..|++|+|
T Consensus       181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~-g--~~~~~~~~~~~~p~~i~v  257 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT-G--SDVNLLAENLLSPEDMVL  257 (266)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT-C--CCCEEEECSCSCCCCEEE
T ss_pred             ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCC-C--cceEEEEcCCCCceEEEE
Confidence            9999999999999999987764   457899999999999999999999999999997 4  356778888899999999


Q ss_pred             eeecCCCC
Q psy950          171 FDIVNQPP  178 (407)
Q Consensus       171 ~~~~~qp~  178 (407)
                      +|+.+||.
T Consensus       258 ~~~~~QP~  265 (266)
T d1ijqa1         258 FHNLTQPR  265 (266)
T ss_dssp             ESGGGSCC
T ss_pred             ECCccCCC
Confidence            99999995

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.2e-28  Score=226.42  Aligned_cols=159  Identities=19%  Similarity=0.290  Sum_probs=142.6

Q ss_pred             EEeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCC-CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeE
Q psy950           13 AIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQ-YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDV   91 (407)
Q Consensus        13 s~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~-~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~l   91 (407)
                      .|.+..++|+.+++++...+.+|++||+||.+|+|||++++. .++|+|++|||++++.++..++..|.|||+|+.+++|
T Consensus       102 ~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~l  181 (263)
T d1npea_         102 RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQL  181 (263)
T ss_dssp             EEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEE
T ss_pred             EEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEE
Confidence            345677888888999998899999999999999999999874 5689999999999999999899999999999999999


Q ss_pred             EEEeCCCCeEEEEecCCCeEEEEccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEe
Q psy950           92 YWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIF  171 (407)
Q Consensus        92 Yw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~  171 (407)
                      ||+|...++|++++++|..++++...+.+|+||++++++||||||..++|+++++.+ |. ....+...+..+|+||+|.
T Consensus       182 Yw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~-g~-~~~~~~~~~~~~~~gi~v~  259 (263)
T d1npea_         182 CWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI-SK-EMDTFHPHKQTRLYGITIA  259 (263)
T ss_dssp             EEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTT-TE-EEEEECCSSCCCCCCEEEE
T ss_pred             EEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEECCEEEEEECCCCEEEEEECCC-Cc-cceEECCCCCCCcceEEEe
Confidence            999999999999999999998888888999999999999999999999999999987 32 2234444677899999999


Q ss_pred             ee
Q psy950          172 DI  173 (407)
Q Consensus       172 ~~  173 (407)
                      |+
T Consensus       260 ~~  261 (263)
T d1npea_         260 LS  261 (263)
T ss_dssp             CS
T ss_pred             CC
Confidence            84

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=1.1e-17  Score=153.83  Aligned_cols=244  Identities=18%  Similarity=0.215  Sum_probs=163.6

Q ss_pred             eEEEcCCCC---CcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeE
Q psy950           25 KKLKTSFRS---ANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI  101 (407)
Q Consensus        25 ~~l~~~~~~---~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I  101 (407)
                      ++|...+++   .|++||+|+. |.+|+++.....+|.+...++..+..+.......|.||++|+ .++|||+|...+.|
T Consensus         3 ~~~~~~~~~~~~~P~~vavd~d-G~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i   80 (260)
T d1rwia_           3 TVLPFTGIDFRLSPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVV   80 (260)
T ss_dssp             EECCCCSCCSCCCEEEEEECTT-CCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEE
T ss_pred             eEEecccCCCcCCCCEEEEcCC-CCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeecee
Confidence            455555654   5999999976 899999987767999999998887776666677999999998 56899999887666


Q ss_pred             EEEecCCCeEEEEc-cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCC
Q psy950          102 QKISYNGGNRQIIR-RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPD  179 (407)
Q Consensus       102 ~~~~~dG~~~~~~~-~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~  179 (407)
                      . +.-++....+.. ..+..|.+|+++. +.+||+|..+..+.+.+..+ .  ........++..|.+|++...      
T Consensus        81 ~-~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~-~--~~~~~~~~~~~~p~~i~~~~~------  150 (260)
T d1rwia_          81 T-LAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-K--TQTVLPFTGLNDPDGVAVDNS------  150 (260)
T ss_dssp             E-ECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTC-S--SCEECCCCSCCSCCEEEECTT------
T ss_pred             e-eeeeccceeeeeeeeeeecccccccccceeEeecccccccccccccc-c--eeeeeeecccCCcceeeecCC------
Confidence            5 444455554443 5678999999987 69999999888888887664 1  112222234555555554310      


Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEee
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTV  259 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~  259 (407)
                      + +                          -+.|.+                       ....|.++..+...  ......
T Consensus       151 g-~--------------------------~~v~~~-----------------------~~~~i~~~d~~~~~--~~~~~~  178 (260)
T d1rwia_         151 G-N--------------------------VYVTDT-----------------------DNNRVVKLEAESNN--QVVLPF  178 (260)
T ss_dssp             C-C--------------------------EEEEEG-----------------------GGTEEEEECTTTCC--EEECCC
T ss_pred             C-C--------------------------Eeeecc-----------------------ccccccccccccce--eeeeec
Confidence            0 0                          011111                       11123333322211  111122


Q ss_pred             cCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECC
Q psy950          260 SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTT  335 (407)
Q Consensus       260 ~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~  335 (407)
                      ..+..+.+|++|.. +.||++|... ++|.++..++.....    .+. .|.|||+|.- ++||++|... ++|.+++..
T Consensus       179 ~~~~~p~gi~~d~~-g~l~vsd~~~-~~i~~~~~~~~~~~~~~~~~~~-~P~~i~~d~~-g~l~vad~~~-~rI~~i~~~  253 (260)
T d1rwia_         179 TDITAPWGIAVDEA-GTVYVTEHNT-NQVVKLLAGSTTSTVLPFTGLN-TPLAVAVDSD-RTVYVADRGN-DRVVKLTSL  253 (260)
T ss_dssp             SSCCSEEEEEECTT-CCEEEEETTT-TEEEEECTTCSCCEECCCCSCC-CEEEEEECTT-CCEEEEEGGG-TEEEEECCC
T ss_pred             cccCCCccceeeee-eeeeeeecCC-CEEEEEeCCCCeEEEEccCCCC-CeEEEEEeCC-CCEEEEECCC-CEEEEEeCC
Confidence            44567889999975 5799999988 889999887654332    455 8999999964 6899999999 899988765


Q ss_pred             CC
Q psy950          336 NP  337 (407)
Q Consensus       336 ~~  337 (407)
                      +.
T Consensus       254 ~~  255 (260)
T d1rwia_         254 EH  255 (260)
T ss_dssp             GG
T ss_pred             CC
Confidence            43

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=5.5e-16  Score=142.19  Aligned_cols=220  Identities=16%  Similarity=0.218  Sum_probs=145.1

Q ss_pred             CceeEEEeCCCCeEEEEeCCC-CeEEEEecCCCeEEEEc-cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcc
Q psy950           78 MPRDLTIDMQTHDVYWVDAKL-DLIQKISYNGGNRQIIR-RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITL  154 (407)
Q Consensus        78 ~P~glaiD~~~~~lYw~d~~~-~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~  154 (407)
                      .|.|||+|. +++||+++... ++|.+.+.++.....+. .....|.||+++. +.|||+|.....+.. ...+    ..
T Consensus        15 ~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~-~~~~----~~   88 (260)
T d1rwia_          15 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTL-AAGS----NN   88 (260)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEE-CTTC----SC
T ss_pred             CCCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeee-eeec----cc
Confidence            799999997 57899998755 67888888877776554 5678999999976 899999998766543 3222    12


Q ss_pred             cEEcc-cCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccccccee
Q psy950          155 PTPIR-TGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY  233 (407)
Q Consensus       155 ~~~i~-~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~  233 (407)
                      ..+.. ..+..|.+|++...                                                  +.        
T Consensus        89 ~~~~~~~~~~~p~~iavd~~--------------------------------------------------g~--------  110 (260)
T d1rwia_          89 QTVLPFDGLNYPEGLAVDTQ--------------------------------------------------GA--------  110 (260)
T ss_dssp             CEECCCCSCCSEEEEEECTT--------------------------------------------------CC--------
T ss_pred             eeeeeeeeeeeccccccccc--------------------------------------------------ce--------
Confidence            22222 23455666554321                                                  00        


Q ss_pred             eeeecc--cceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCcc
Q psy950          234 LVFSTR--TEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVV  307 (407)
Q Consensus       234 Ll~s~~--~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~  307 (407)
                      ++++..  ..+..+......  ...........+.++++|+.+ .+|+++... .+|.+++.++.....    .+. .|.
T Consensus       111 i~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~i~~~~~g-~~~v~~~~~-~~i~~~d~~~~~~~~~~~~~~~-~p~  185 (260)
T d1rwia_         111 VYVADRGNNRVVKLAAGSKT--QTVLPFTGLNDPDGVAVDNSG-NVYVTDTDN-NRVVKLEAESNNQVVLPFTDIT-APW  185 (260)
T ss_dssp             EEEEEGGGTEEEEECTTCSS--CEECCCCSCCSCCEEEECTTC-CEEEEEGGG-TEEEEECTTTCCEEECCCSSCC-SEE
T ss_pred             eEeeccccccccccccccce--eeeeeecccCCcceeeecCCC-CEeeecccc-ccccccccccceeeeeeccccC-CCc
Confidence            111110  111111111111  111122345567789999754 699999888 889999988765443    456 899


Q ss_pred             EEEEeccCCeEEEEeCCCCCeEEEEECCCCcc-c--ccCCCceeEEEEcCCCCeEEEEeCCCCCcc
Q psy950          308 GVEFDYADDKILFTQIRPWAKIAWIPTTNPSS-A--SSNLTNVVGVEFDYADDKILFTQIRPWAKI  370 (407)
Q Consensus       308 glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r-l--~~~l~~P~~iavdp~~g~lywtd~~~~~~i  370 (407)
                      ||++|.- ++||++|... ++|.++..++... +  ...+.+|.+|++|+. |.||++||++. +|
T Consensus       186 gi~~d~~-g~l~vsd~~~-~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~-g~l~vad~~~~-rI  247 (260)
T d1rwia_         186 GIAVDEA-GTVYVTEHNT-NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD-RTVYVADRGND-RV  247 (260)
T ss_dssp             EEEECTT-CCEEEEETTT-TEEEEECTTCSCCEECCCCSCCCEEEEEECTT-CCEEEEEGGGT-EE
T ss_pred             cceeeee-eeeeeeecCC-CEEEEEeCCCCeEEEEccCCCCCeEEEEEeCC-CCEEEEECCCC-EE
Confidence            9999985 6899999999 8999998877643 2  347789999999975 89999999653 44

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=1.2e-12  Score=120.79  Aligned_cols=225  Identities=12%  Similarity=0.093  Sum_probs=157.5

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeC-----CCCCceeEEEeCCCCeEEEEe-CCCCeEEEEe
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSN-----GISMPRDLTIDMQTHDVYWVD-AKLDLIQKIS  105 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~-----~~~~P~glaiD~~~~~lYw~d-~~~~~I~~~~  105 (407)
                      +..|++||||+. |.||++|..++ +|.+.+.+|.-...+-..     ....|.+++++...+..+|+. ...+.|...+
T Consensus        22 f~~P~gvavd~d-g~i~VaD~~n~-rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          22 FTEPSGVAVNAQ-NDIIVADTNNH-RIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             BSCEEEEEECTT-CCEEEEEGGGT-EEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ECCccEEEEcCC-CCEEEEECCCC-EEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc
Confidence            678999999985 88999999875 999999999766554321     234799999988877777764 4567899999


Q ss_pred             cCCCeEEEEc-cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCC
Q psy950          106 YNGGNRQIIR-RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNP  183 (407)
Q Consensus       106 ~dG~~~~~~~-~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~  183 (407)
                      .+|.....+. ..+..|.+++++. +.+|+++.....+...+..+  +  ....             +.  ..       
T Consensus       100 ~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g--~--~~~~-------------~g--~~-------  153 (279)
T d1q7fa_         100 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG--N--VLHK-------------FG--CS-------  153 (279)
T ss_dssp             TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS--C--EEEE-------------EE--CT-------
T ss_pred             ccccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC--c--eeec-------------cc--cc-------
Confidence            9998877664 5688999999987 78999888777666655443  1  0000             00  00       


Q ss_pred             ccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCc
Q psy950          184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLT  263 (407)
Q Consensus       184 C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~  263 (407)
                                                                                                  ....
T Consensus       154 ----------------------------------------------------------------------------~~~~  157 (279)
T d1q7fa_         154 ----------------------------------------------------------------------------KHLE  157 (279)
T ss_dssp             ----------------------------------------------------------------------------TTCS
T ss_pred             ----------------------------------------------------------------------------cccc
Confidence                                                                                        0011


Q ss_pred             ceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc-----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc
Q psy950          264 NVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS-----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS  338 (407)
Q Consensus       264 ~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~-----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~  338 (407)
                      .+.++++|. ++.+|+++... .+|++.+.+|.....     .+. .|.|||+|.-+ +||++|.....+|.+++.+|.-
T Consensus       158 ~~~~i~~d~-~g~i~v~d~~~-~~V~~~d~~G~~~~~~g~~g~~~-~P~giavD~~G-~i~Vad~~~~~~v~~f~~~G~~  233 (279)
T d1q7fa_         158 FPNGVVVND-KQEIFISDNRA-HCVKVFNYEGQYLRQIGGEGITN-YPIGVGINSNG-EILIADNHNNFNLTIFTQDGQL  233 (279)
T ss_dssp             SEEEEEECS-SSEEEEEEGGG-TEEEEEETTCCEEEEESCTTTSC-SEEEEEECTTC-CEEEEECSSSCEEEEECTTSCE
T ss_pred             ccceeeecc-ceeEEeeeccc-cceeeeecCCceeeeeccccccc-CCcccccccCC-eEEEEECCCCcEEEEECCCCCE
Confidence            123444453 34567777666 667776666643221     234 89999999976 6999998652579999988874


Q ss_pred             c--ccc--CCCceeEEEEcCCCCeEEEEeCC
Q psy950          339 S--ASS--NLTNVVGVEFDYADDKILFTQIR  365 (407)
Q Consensus       339 r--l~~--~l~~P~~iavdp~~g~lywtd~~  365 (407)
                      .  +..  ....|.+||++|. |+||.+++.
T Consensus       234 ~~~~~~~~~~~~p~~vav~~d-G~l~V~~~n  263 (279)
T d1q7fa_         234 ISALESKVKHAQCFDVALMDD-GSVVLASKD  263 (279)
T ss_dssp             EEEEEESSCCSCEEEEEEETT-TEEEEEETT
T ss_pred             EEEEeCCCCCCCEeEEEEeCC-CcEEEEeCC
Confidence            2  332  4578999999995 899999863

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.55  E-value=2.8e-12  Score=120.59  Aligned_cols=251  Identities=11%  Similarity=0.084  Sum_probs=165.6

Q ss_pred             ceEEEcCCCCCcceEEEeCCCCEEEEEEcCC------CCeEEEEeCCCCCeEEEEeCC----CCCceeEEEeCCCCeEEE
Q psy950           24 KKKLKTSFRSANTTSPFSPLPRLLYWIDYGQ------YPRIGKSYLDGSKWTSIVSNG----ISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        24 ~~~l~~~~~~~P~~iavdp~~g~lywtd~~~------~~~I~r~~~dG~~~~~l~~~~----~~~P~glaiD~~~~~lYw   93 (407)
                      .-.++..++..|.|+|+|+. |.||+++...      ..+|.|.+.++...+.+....    ...|+||++|+.+++||+
T Consensus         9 ~~~~v~~~~~g~EGpa~d~d-G~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~v   87 (314)
T d1pjxa_           9 LFTKVTEDIPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV   87 (314)
T ss_dssp             CCEEEECCCTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE
T ss_pred             ceEEeecCCCCCeEeEEeCC-CCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEE
Confidence            45677889999999999986 8899998642      247999999988776655321    246999999999899999


Q ss_pred             EeCCCCeEEEEecCCCeEEEEc-----cCCCCceEEEEeC-CEEEEEeCCCC---------------eEEEEecCCCCCC
Q psy950           94 VDAKLDLIQKISYNGGNRQIIR-----RNLPNPMGIAVHK-SDVYWVDRNLR---------------TVYKASKLASTNI  152 (407)
Q Consensus        94 ~d~~~~~I~~~~~dG~~~~~~~-----~~~~~P~~lav~~-~~lYwtd~~~~---------------~I~~~~~~~~g~~  152 (407)
                      +|.. +.|.+++.+|...+++.     ..+..|.+++++. +.||+||....               .|++++.++    
T Consensus        88 ad~~-~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg----  162 (314)
T d1pjxa_          88 ADMR-LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG----  162 (314)
T ss_dssp             EETT-TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS----
T ss_pred             EECC-CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC----
Confidence            9865 67999999998776554     2355789999987 89999986432               333333332    


Q ss_pred             cccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccce
Q psy950          153 TLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDE  232 (407)
Q Consensus       153 ~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~  232 (407)
                       ....+...+..|.+|.+                                                  .+++.   ....
T Consensus       163 -~~~~~~~~~~~pNGi~~--------------------------------------------------~~d~d---~~~~  188 (314)
T d1pjxa_         163 -QMIQVDTAFQFPNGIAV--------------------------------------------------RHMND---GRPY  188 (314)
T ss_dssp             -CEEEEEEEESSEEEEEE--------------------------------------------------EECTT---SCEE
T ss_pred             -ceeEeeCCcceeeeeEE--------------------------------------------------CCCCC---ccee
Confidence             01111122222333322                                                  22211   0111


Q ss_pred             eeeee--cccceEEeecCCCCC-ee--eeEeec--CCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--cC-
Q psy950          233 YLVFS--TRTEIRALHLDPTLT-AV--PFKTVS--NLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SN-  302 (407)
Q Consensus       233 ~Ll~s--~~~~I~~i~l~~~~~-~~--~~~~~~--~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~-  302 (407)
                      +|+++  ....|.++.++.... ..  .+..+.  ....+-+|++|..+ .||+++... ++|.+++-++.....  .+ 
T Consensus       189 ~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G-nlyVa~~~~-g~I~~~dp~~g~~~~~i~~p  266 (314)
T d1pjxa_         189 QLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGS-SHIEVFGPDGGQPKMRIRCP  266 (314)
T ss_dssp             EEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETT-TEEEEECTTCBSCSEEEECS
T ss_pred             EEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC-cEEEEEcCC-CEEEEEeCCCCEEEEEEECC
Confidence            23333  234566666543221 11  111221  23357789999654 699999988 899999887654332  22 


Q ss_pred             CCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCC
Q psy950          303 LTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNP  337 (407)
Q Consensus       303 ~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~  337 (407)
                      ...|.++|+..-.+.||.|+... ++|.++++.-.
T Consensus       267 ~~~~t~~afg~d~~~lyVt~~~~-g~i~~~~~~~~  300 (314)
T d1pjxa_         267 FEKPSNLHFKPQTKTIFVTEHEN-NAVWKFEWQRN  300 (314)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTT-TEEEEEECSSC
T ss_pred             CCCEEEEEEeCCCCEEEEEECCC-CcEEEEECCCC
Confidence            23889999998788899999999 89999987643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.49  E-value=1.5e-11  Score=115.72  Aligned_cols=225  Identities=11%  Similarity=0.103  Sum_probs=155.6

Q ss_pred             CcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC----CCeEEEEecCCC
Q psy950           34 ANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK----LDLIQKISYNGG  109 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~----~~~I~~~~~dG~  109 (407)
                      ...|+++|+. |.|||+|.... +|.|.+.+|......+......|+||++++. ++||+++..    ...|...+.++.
T Consensus        41 ~lEG~~~D~~-G~Ly~~D~~~g-~I~ri~p~g~~~~~~~~~~~~~p~gla~~~d-G~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          41 QLEGLNFDRQ-GQLFLLDVFEG-NIFKINPETKEIKRPFVSHKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CEEEEEECTT-SCEEEEETTTC-EEEEECTTTCCEEEEEECSSSSEEEEEECTT-SCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CcEeCEECCC-CCEEEEECCCC-EEEEEECCCCeEEEEEeCCCCCeeEEEECCC-CCEEEEecCCCccceeEEEEcCCCc
Confidence            3479999976 78999998765 9999999998766666556678999999984 689999753    456888888877


Q ss_pred             eEEEEc---cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCcc
Q psy950          110 NRQIIR---RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCF  185 (407)
Q Consensus       110 ~~~~~~---~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~  185 (407)
                      ....+.   .....|.+++++. +.+|++|.....       .    .           +.+ .++              
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~-------~----~-----------~~g-~v~--------------  160 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS-------T----N-----------PLG-GVY--------------  160 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT-------T----B-----------CCE-EEE--------------
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeeccccccc-------c----c-----------Ccc-eeE--------------
Confidence            665443   3456788999987 789998754211       0    0           000 000              


Q ss_pred             CCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcce
Q psy950          186 RTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNV  265 (407)
Q Consensus       186 ~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~  265 (407)
                                                       .+.++++..               ..+             ...+..+
T Consensus       161 ---------------------------------~~~~dg~~~---------------~~~-------------~~~~~~p  179 (319)
T d2dg1a1         161 ---------------------------------YVSPDFRTV---------------TPI-------------IQNISVA  179 (319)
T ss_dssp             ---------------------------------EECTTSCCE---------------EEE-------------EEEESSE
T ss_pred             ---------------------------------EEeccccee---------------EEE-------------eecccee
Confidence                                             011122100               000             0112335


Q ss_pred             EEEEEEcCCCEEEEEEecCCceEEEEeCCCCccc--------c----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEE
Q psy950          266 VGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA--------S----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIP  333 (407)
Q Consensus       266 ~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~--------~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~  333 (407)
                      -+|++++.++.||++|... ++|+++.++.....        .    ... .|.|||+|. .+|||+++... ++|.+++
T Consensus       180 nGia~s~dg~~lyvad~~~-~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~-~PdGl~vD~-~G~l~Va~~~~-g~V~~~~  255 (319)
T d2dg1a1         180 NGIALSTDEKVLWVTETTA-NRLHRIALEDDGVTIQPFGATIPYYFTGHE-GPDSCCIDS-DDNLYVAMYGQ-GRVLVFN  255 (319)
T ss_dssp             EEEEECTTSSEEEEEEGGG-TEEEEEEECTTSSSEEEEEEEEEEECCSSS-EEEEEEEBT-TCCEEEEEETT-TEEEEEC
T ss_pred             eeeeeccccceEEEecccC-CceEEEEEcCCCceeccccceeeeccCCcc-ceeeeeEcC-CCCEEEEEcCC-CEEEEEC
Confidence            6789999999999999988 89999887643211        0    233 689999997 46799999999 8999999


Q ss_pred             CCCCc--ccc------cCCCceeEEEEcCCCCeEEEEe
Q psy950          334 TTNPS--SAS------SNLTNVVGVEFDYADDKILFTQ  363 (407)
Q Consensus       334 ~~~~~--rl~------~~l~~P~~iavdp~~g~lywtd  363 (407)
                      .+|..  ++.      .....+..++..|....+|.|-
T Consensus       256 p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         256 KRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             TTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            88763  221      2345678999999888888774

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.40  E-value=3.1e-10  Score=105.35  Aligned_cols=227  Identities=10%  Similarity=0.036  Sum_probs=161.3

Q ss_pred             CcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCC---e
Q psy950           34 ANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGG---N  110 (407)
Q Consensus        34 ~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~---~  110 (407)
                      .|.+||++|. |.||++|.... +|.|.+-+|... .+.. ....|.+|++++. ++||+++...+.+..+++++.   .
T Consensus        29 ~~e~iAv~pd-G~l~vt~~~~~-~I~~i~p~g~~~-~~~~-~~~~~~gla~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          29 FLENLASAPD-GTIFVTNHEVG-EIVSITPDGNQQ-IHAT-VEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             CEEEEEECTT-SCEEEEETTTT-EEEEECTTCCEE-EEEE-CSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcCCEEECCC-CCEEEEeCCCC-EEEEEeCCCCEE-EEEc-CCCCcceEEEcCC-CCeEEEecCCceEEEEEecccccce
Confidence            3789999997 78999999864 999999998743 3443 3468999999995 679999998888888877543   3


Q ss_pred             EEEE-ccCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCC
Q psy950          111 RQII-RRNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTG  188 (407)
Q Consensus       111 ~~~~-~~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~  188 (407)
                      .... ......|.+++++. +.+|.++.....+++.+..+ +   ...+.           ..++..++.       .  
T Consensus       104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~-~---~~~~~-----------~~~~~~~~~-------~--  159 (302)
T d2p4oa1         104 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ-P---SGSIW-----------LEHPMLARS-------N--  159 (302)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT-T---EEEEE-----------EECGGGSCS-------S--
T ss_pred             eeccccCCccccceeEEccCCCEEeeccccccceeeeccC-C---cceeE-----------ecCCcccee-------e--
Confidence            2222 25677899999976 89999999988999888664 1   11111           111000000       0  


Q ss_pred             cccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEEE
Q psy950          189 NGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGV  268 (407)
Q Consensus       189 ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~al  268 (407)
                                                      .                                     ......+.++
T Consensus       160 --------------------------------~-------------------------------------~~~~~~~ngi  170 (302)
T d2p4oa1         160 --------------------------------S-------------------------------------ESVFPAANGL  170 (302)
T ss_dssp             --------------------------------T-------------------------------------TCCSCSEEEE
T ss_pred             --------------------------------c-------------------------------------cCcccccccc
Confidence                                            0                                     0001123345


Q ss_pred             EEEcCCCEEEEEEecCCceEEEEeCCCCcccc------cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc-c-
Q psy950          269 EFDYADDKILFTQIRPWAKIAWIPTTNPSSAS------SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS-A-  340 (407)
Q Consensus       269 d~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~------~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r-l-  340 (407)
                      .+|  ++.+|+++... .+|+++..++.....      ... .|.|||+|.-+ +||.++... ++|.+++.+|... + 
T Consensus       171 ~~~--~~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~-~pdgia~d~dG-~l~va~~~~-~~V~~i~p~G~~~~~~  244 (302)
T d2p4oa1         171 KRF--GNFLYVSNTEK-MLLLRIPVDSTDKPGEPEIFVEQT-NIDDFAFDVEG-NLYGATHIY-NSVVRIAPDRSTTIIA  244 (302)
T ss_dssp             EEE--TTEEEEEETTT-TEEEEEEBCTTSCBCCCEEEEESC-CCSSEEEBTTC-CEEEECBTT-CCEEEECTTCCEEEEE
T ss_pred             ccc--CCceeeecCCC-CeEEeccccccccccccccccCCC-CCcceEECCCC-CEEEEEcCC-CcEEEECCCCCEEEEE
Confidence            555  68999999988 899999887654332      344 89999999875 699999888 8999999998753 3 


Q ss_pred             --ccCCCceeEEEEcC---CCCeEEEEeC
Q psy950          341 --SSNLTNVVGVEFDY---ADDKILFTQI  364 (407)
Q Consensus       341 --~~~l~~P~~iavdp---~~g~lywtd~  364 (407)
                        ...+..|.++++.+   -...||.+.-
T Consensus       245 ~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         245 QAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             CGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             ecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence              34778999999954   4567998864

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.26  E-value=1e-09  Score=102.81  Aligned_cols=204  Identities=15%  Similarity=0.170  Sum_probs=135.1

Q ss_pred             CceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE-EEEccCCCCceEEEEeC-CEEEEEeCCC----CeEEEEecCCCCC
Q psy950           78 MPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR-QIIRRNLPNPMGIAVHK-SDVYWVDRNL----RTVYKASKLASTN  151 (407)
Q Consensus        78 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~P~~lav~~-~~lYwtd~~~----~~I~~~~~~~~g~  151 (407)
                      ..+|+++|.. ++|||+|...++|.+++.+|... ..+......|.||++.. +.||.++...    ..|...+..+ + 
T Consensus        41 ~lEG~~~D~~-G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~-~-  117 (319)
T d2dg1a1          41 QLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-D-  117 (319)
T ss_dssp             CEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-C-
T ss_pred             CcEeCEECCC-CCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC-c-
Confidence            5689999975 57999999999999999998765 44456667899999986 7888876432    1233333222 0 


Q ss_pred             CcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccc
Q psy950          152 ITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMD  231 (407)
Q Consensus       152 ~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~  231 (407)
                        ....+.            .                                                           
T Consensus       118 --~~~~~~------------~-----------------------------------------------------------  124 (319)
T d2dg1a1         118 --NLQDII------------E-----------------------------------------------------------  124 (319)
T ss_dssp             --SCEEEE------------C-----------------------------------------------------------
T ss_pred             --eeeeec------------c-----------------------------------------------------------
Confidence              000000            0                                                           


Q ss_pred             eeeeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecC-----CceEEEEeCCCCcccc---cCC
Q psy950          232 EYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRP-----WAKIAWIPTTNPSSAS---SNL  303 (407)
Q Consensus       232 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~-----~~~I~~~~~~~~~~~~---~~~  303 (407)
                                       .         ......+-.+.+|+.+ ++|++|...     .+.+++++.++.....   ++.
T Consensus       125 -----------------~---------~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~  177 (319)
T d2dg1a1         125 -----------------D---------LSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS  177 (319)
T ss_dssp             -----------------S---------SSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES
T ss_pred             -----------------C---------CCcccCCcceeEEecc-ceeecccccccccCcceeEEEecccceeEEEeeccc
Confidence                             0         0000112234445433 466666432     2457777777654332   566


Q ss_pred             CCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc--------c---ccCCCceeEEEEcCCCCeEEEEeCCCCCcccc
Q psy950          304 TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS--------A---SSNLTNVVGVEFDYADDKILFTQIRPWAKIAW  372 (407)
Q Consensus       304 ~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r--------l---~~~l~~P~~iavdp~~g~lywtd~~~~~~ia~  372 (407)
                       .|.|||+|..++.||++|... ++|.+++++....        .   ......|.||++|+ .|.||.++|+... |  
T Consensus       178 -~pnGia~s~dg~~lyvad~~~-~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~-V--  251 (319)
T d2dg1a1         178 -VANGIALSTDEKVLWVTETTA-NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGR-V--  251 (319)
T ss_dssp             -SEEEEEECTTSSEEEEEEGGG-TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTE-E--
T ss_pred             -eeeeeeeccccceEEEecccC-CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC-CCCEEEEEcCCCE-E--
Confidence             899999999999999999999 8999998764321        1   12446799999997 6899999986543 4  


Q ss_pred             cCCCCCCCcceeEEEeCCC
Q psy950          373 IPTTNPSSASVNTILSRGK  391 (407)
Q Consensus       373 ~dg~~~~~~~~~~l~~~~~  391 (407)
                       -..+++|..+.+|.+|..
T Consensus       252 -~~~~p~G~~l~~i~~P~~  269 (319)
T d2dg1a1         252 -LVFNKRGYPIGQILIPGR  269 (319)
T ss_dssp             -EEECTTSCEEEEEECTTG
T ss_pred             -EEECCCCcEEEEEeCCCc
Confidence             235678888888887753

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.26  E-value=1.7e-09  Score=98.97  Aligned_cols=194  Identities=11%  Similarity=0.104  Sum_probs=143.2

Q ss_pred             CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEE
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQ  112 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~  112 (407)
                      ..|.+++++...+..+|+......+|.+.+.+|.....+-...+..|.++++|. .+++|+++...+++...+.+|+-..
T Consensus        70 ~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~g~~~~  148 (279)
T d1q7fa_          70 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNVLH  148 (279)
T ss_dssp             SSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEE
T ss_pred             cccccccccccccccceeccCCccccccccccccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccCCceee
Confidence            368999999998988888766556999999999877766555678899999997 5689999999999999999998766


Q ss_pred             EEc--cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCc
Q psy950          113 IIR--RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGN  189 (407)
Q Consensus       113 ~~~--~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~n  189 (407)
                      .+.  ..+..|.++++++ +.+|++|+..+.|.+.+..+  +  .   +.          -+                  
T Consensus       149 ~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G--~--~---~~----------~~------------------  193 (279)
T d1q7fa_         149 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG--Q--Y---LR----------QI------------------  193 (279)
T ss_dssp             EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC--C--E---EE----------EE------------------
T ss_pred             cccccccccccceeeeccceeEEeeeccccceeeeecCC--c--e---ee----------ee------------------
Confidence            553  5678999999987 79999999888887766553  1  0   00          00                  


Q ss_pred             ccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEEEE
Q psy950          190 GGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVE  269 (407)
Q Consensus       190 g~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald  269 (407)
                                                     ...+                                    .+..|.+|+
T Consensus       194 -------------------------------g~~g------------------------------------~~~~P~gia  206 (279)
T d1q7fa_         194 -------------------------------GGEG------------------------------------ITNYPIGVG  206 (279)
T ss_dssp             -------------------------------SCTT------------------------------------TSCSEEEEE
T ss_pred             -------------------------------cccc------------------------------------cccCCcccc
Confidence                                           0000                                    012246788


Q ss_pred             EEcCCCEEEEEEecCCceEEEEeCCCCcccc-----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEEC
Q psy950          270 FDYADDKILFTQIRPWAKIAWIPTTNPSSAS-----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPT  334 (407)
Q Consensus       270 ~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~-----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~  334 (407)
                      +|+.++ ||++|.....+|...+.+|.....     ... .|.+||+|+- ++||+++. . ++|.++..
T Consensus       207 vD~~G~-i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~-~p~~vav~~d-G~l~V~~~-n-~~v~~fr~  271 (279)
T d1q7fa_         207 INSNGE-ILIADNHNNFNLTIFTQDGQLISALESKVKHA-QCFDVALMDD-GSVVLASK-D-YRLYIYRY  271 (279)
T ss_dssp             ECTTCC-EEEEECSSSCEEEEECTTSCEEEEEEESSCCS-CEEEEEEETT-TEEEEEET-T-TEEEEEEC
T ss_pred             cccCCe-EEEEECCCCcEEEEECCCCCEEEEEeCCCCCC-CEeEEEEeCC-CcEEEEeC-C-CeEEEEEe
Confidence            887765 899987542467777777653322     234 7999999996 57999985 5 58888753

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.24  E-value=1.1e-09  Score=102.31  Aligned_cols=241  Identities=14%  Similarity=0.149  Sum_probs=145.2

Q ss_pred             EEEeCCCCCceeEEEeCCCCeEEEEeCC-------CCeEEEEecCCCeEEEEc-----cCCCCceEEEEeC--CEEEEEe
Q psy950           70 SIVSNGISMPRDLTIDMQTHDVYWVDAK-------LDLIQKISYNGGNRQIIR-----RNLPNPMGIAVHK--SDVYWVD  135 (407)
Q Consensus        70 ~l~~~~~~~P~glaiD~~~~~lYw~d~~-------~~~I~~~~~dG~~~~~~~-----~~~~~P~~lav~~--~~lYwtd  135 (407)
                      +.+.+++..|+|+++|+ .++||+++..       .++|.+++.++.....+.     .....|.||+++.  +.||.++
T Consensus        11 ~~v~~~~~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad   89 (314)
T d1pjxa_          11 TKVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD   89 (314)
T ss_dssp             EEEECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE
T ss_pred             EEeecCCCCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEE
Confidence            34566888999999998 5789999865       367999999988776554     2234699999986  4788887


Q ss_pred             CCCCeEEEEecCCCCCCcccEEcccC-----CCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcce
Q psy950          136 RNLRTVYKASKLASTNITLPTPIRTG-----LSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHY  210 (407)
Q Consensus       136 ~~~~~I~~~~~~~~g~~~~~~~i~~~-----~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~  210 (407)
                      .. +.|.+++.++ +   ..+++...     +..|.++.+...                           +      .=|
T Consensus        90 ~~-~~i~~~~~~g-~---~~~~~~~~~~g~~~~~pndl~~d~~---------------------------G------~ly  131 (314)
T d1pjxa_          90 MR-LGLLVVQTDG-T---FEEIAKKDSEGRRMQGCNDCAFDYE---------------------------G------NLW  131 (314)
T ss_dssp             TT-TEEEEEETTS-C---EEECCSBCTTSCBCBCCCEEEECTT---------------------------S------CEE
T ss_pred             CC-CeEEEEeCCC-c---EEEEEeccccccccCCCcEEEECCC---------------------------C------CEE
Confidence            65 5688888775 1   22222211     122333333210                           0      001


Q ss_pred             EEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCC----EEEEEEecCCc
Q psy950          211 KCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADD----KILFTQIRPWA  286 (407)
Q Consensus       211 ~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~----~lywsd~~~~~  286 (407)
                      .......+  ........      .......+.++..+.+ ...   ....+..+-++.+++.++    +||++|... +
T Consensus       132 vtd~~~~~--~~~~~~~~------~~~~~G~v~~~~~dg~-~~~---~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~-~  198 (314)
T d1pjxa_         132 ITAPAGEV--APADYTRS------MQEKFGSIYCFTTDGQ-MIQ---VDTAFQFPNGIAVRHMNDGRPYQLIVAETPT-K  198 (314)
T ss_dssp             EEECBCBC--TTSCCCBT------TSSSCEEEEEECTTSC-EEE---EEEEESSEEEEEEEECTTSCEEEEEEEETTT-T
T ss_pred             EecCccCc--ccccccce------eccCCceEEEEeecCc-eeE---eeCCcceeeeeEECCCCCcceeEEEEEeecc-c
Confidence            11100000  00000000      0001112333332221 111   112233455677766654    899999988 8


Q ss_pred             eEEEEeCCCCcccc-----------cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc---cccCCCceeEEEE
Q psy950          287 KIAWIPTTNPSSAS-----------SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS---ASSNLTNVVGVEF  352 (407)
Q Consensus       287 ~I~~~~~~~~~~~~-----------~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r---l~~~l~~P~~iav  352 (407)
                      +|.++.++......           ..+ .|.|||+|.- +|||.++... ++|.+++.++...   +......|.++++
T Consensus       199 ~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~pdGiavD~~-GnlyVa~~~~-g~I~~~dp~~g~~~~~i~~p~~~~t~~af  275 (314)
T d1pjxa_         199 KLWSYDIKGPAKIENKKVWGHIPGTHEG-GADGMDFDED-NNLLVANWGS-SHIEVFGPDGGQPKMRIRCPFEKPSNLHF  275 (314)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECCCCSSC-EEEEEEEBTT-CCEEEEEETT-TEEEEECTTCBSCSEEEECSSSCEEEEEE
T ss_pred             ceEEeeccCccccceeeEEEEccccccc-cceeeEEecC-CcEEEEEcCC-CEEEEEeCCCCEEEEEEECCCCCEEEEEE
Confidence            89998765432211           223 6899999965 6899999988 8999999887653   2334578999999


Q ss_pred             cCCCCeEEEEeCC
Q psy950          353 DYADDKILFTQIR  365 (407)
Q Consensus       353 dp~~g~lywtd~~  365 (407)
                      .|....||.|+..
T Consensus       276 g~d~~~lyVt~~~  288 (314)
T d1pjxa_         276 KPQTKTIFVTEHE  288 (314)
T ss_dssp             CTTSSEEEEEETT
T ss_pred             eCCCCEEEEEECC
Confidence            9977789999864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.19  E-value=3.5e-08  Score=88.79  Aligned_cols=274  Identities=17%  Similarity=0.156  Sum_probs=166.5

Q ss_pred             CEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEccCCCCceEE
Q psy950           45 RLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGI  124 (407)
Q Consensus        45 g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~l  124 (407)
                      -|+|+++.+.. .|...+++-......+..+ ..|.++++++.+++||+++...++|...++..............|.++
T Consensus         2 ~~~yV~~~~~~-~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~   79 (301)
T d1l0qa2           2 TFAYIANSESD-NISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGV   79 (301)
T ss_dssp             EEEEEEETTTT-EEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred             eEEEEEECCCC-EEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccc
Confidence            37899988765 8998887644333333333 479999999999999999999999999999765543323445689999


Q ss_pred             EEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCC
Q psy950          125 AVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVE  202 (407)
Q Consensus       125 av~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~  202 (407)
                      ++..  ..+|.+......+...+... +  .....+.. ...|.                           .+       
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~-~~~~~---------------------------~~-------  121 (301)
T d1l0qa2          80 AVSPDGKQVYVTNMASSTLSVIDTTS-N--TVAGTVKT-GKSPL---------------------------GL-------  121 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTT-T--EEEEEEEC-SSSEE---------------------------EE-------
T ss_pred             ccccccccccccccccceeeeccccc-c--eeeeeccc-cccce---------------------------EE-------
Confidence            9876  56777777766666666543 1  11111110 00000                           00       


Q ss_pred             CCCCCcceEEecCCCccccCCCCcccccceeeeeecc--cceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEE
Q psy950          203 FPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTR--TEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFT  280 (407)
Q Consensus       203 ~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~--~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lyws  280 (407)
                               +.       .+|+..       ++++..  ..+........   .....+.....+..+.+.+.++.+|.+
T Consensus       122 ---------~~-------~~dg~~-------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (301)
T d1l0qa2         122 ---------AL-------SPDGKK-------LYVTNNGDKTVSVINTVTK---AVINTVSVGRSPKGIAVTPDGTKVYVA  175 (301)
T ss_dssp             ---------EE-------CTTSSE-------EEEEETTTTEEEEEETTTT---EEEEEEECCSSEEEEEECTTSSEEEEE
T ss_pred             ---------Ee-------ecCCCe-------eeeeeccccceeeeecccc---ceeeecccCCCceEEEeeccccceeee
Confidence                     11       111111       111110  11111111111   111122333456778889999999998


Q ss_pred             EecCCceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeCCCC-CeEEEEECCCCccc--ccCCCceeEEEEcCC
Q psy950          281 QIRPWAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIRPW-AKIAWIPTTNPSSA--SSNLTNVVGVEFDYA  355 (407)
Q Consensus       281 d~~~~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~~~~-~~I~v~~~~~~~rl--~~~l~~P~~iavdp~  355 (407)
                      .... ..+............  .....|.++++++.++.+|++..... ++|.+.++.....+  ......|.+|++.|-
T Consensus       176 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spd  254 (301)
T d1l0qa2         176 NFDS-MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPD  254 (301)
T ss_dssp             ETTT-TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTT
T ss_pred             cccc-cccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCC
Confidence            8776 656666655543332  33337899999999999998754321 57999998766432  234468999999999


Q ss_pred             CCeEEEEeCCCCCcccccCCCCCCCcceeEEEe
Q psy950          356 DDKILFTQIRPWAKIAWIPTTNPSSASVNTILS  388 (407)
Q Consensus       356 ~g~lywtd~~~~~~ia~~dg~~~~~~~~~~l~~  388 (407)
                      ..+||.+.+++. .|.-.|-.  .+..+.+|.+
T Consensus       255 g~~l~va~~~~~-~i~v~D~~--t~~~~~~~~v  284 (301)
T d1l0qa2         255 GKKVYVALSFCN-TVSVIDTA--TNTITATMAV  284 (301)
T ss_dssp             SSEEEEEETTTT-EEEEEETT--TTEEEEEEEC
T ss_pred             CCEEEEEECCCC-eEEEEECC--CCeEEEEEeC
Confidence            989999987553 35223332  2345555554

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=6.2e-12  Score=83.71  Aligned_cols=46  Identities=28%  Similarity=0.616  Sum_probs=38.0

Q ss_pred             CCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      -|+|.. +||||+|+|++.|... +..++|+|+||.||.|.+|+++|.
T Consensus         4 cneC~~-~NGGC~h~Cl~~p~~~-n~~~~y~C~C~~G~~L~~D~~tCi   49 (50)
T d1ijqa2           4 CERTTL-SNGGCQYLCLPAPQIN-PHSPKFTCACPDGMLLARDMRSCL   49 (50)
T ss_dssp             TSSSSS-GGGGCSSEEEECCCCS-TTCCSEEEECCTTCEECTTSSCEE
T ss_pred             ccccCC-CCCCCcCccCCCcCcc-cCCCCEEEeCCCCCEECCCCCccc
Confidence            367877 8999999999887521 133579999999999999999995

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.16  E-value=6.4e-08  Score=86.98  Aligned_cols=241  Identities=13%  Similarity=0.111  Sum_probs=152.2

Q ss_pred             CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEE
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQ  112 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~  112 (407)
                      ..|++|+++|..++||.++.... +|...++........+. ....|.++++++.+..+|.+......+...+.......
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~-~i~v~d~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSN-DVSIIDTATNNVIATVP-AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA  109 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGT-EEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCC-EEEEEECCCCceeeeee-ccccccccccccccccccccccccceeeecccccceee
Confidence            56999999999999999988765 89999987544433333 23579999999999999999998899999888776554


Q ss_pred             EEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcc
Q psy950          113 IIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNG  190 (407)
Q Consensus       113 ~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng  190 (407)
                      ........|..+++..  ..++.+......+...+... +  .....+. ....|..+..                    
T Consensus       110 ~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~--------------------  165 (301)
T d1l0qa2         110 GTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-K--AVINTVS-VGRSPKGIAV--------------------  165 (301)
T ss_dssp             EEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-T--EEEEEEE-CCSSEEEEEE--------------------
T ss_pred             eeccccccceEEEeecCCCeeeeeeccccceeeeeccc-c--ceeeecc-cCCCceEEEe--------------------
Confidence            4444556778888754  57777776666665555443 1  1111110 0111111110                    


Q ss_pred             cccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeeccc-ceEEeecCCCCCeeeeEeecCCcceEEEE
Q psy950          191 GCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRT-EIRALHLDPTLTAVPFKTVSNLTNVVGVE  269 (407)
Q Consensus       191 ~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~-~I~~i~l~~~~~~~~~~~~~~~~~~~ald  269 (407)
                                                    .+++.       .++++... ....+......  ...........+.++.
T Consensus       166 ------------------------------~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  206 (301)
T d1l0qa2         166 ------------------------------TPDGT-------KVYVANFDSMSISVIDTVTN--SVIDTVKVEAAPSGIA  206 (301)
T ss_dssp             ------------------------------CTTSS-------EEEEEETTTTEEEEEETTTT--EEEEEEECSSEEEEEE
T ss_pred             ------------------------------ecccc-------ceeeecccccccccccccce--eeeecccccCCcceee
Confidence                                          01110       01111110 11111111111  1111222334567888


Q ss_pred             EEcCCCEEEEEEecC-CceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc
Q psy950          270 FDYADDKILFTQIRP-WAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS  339 (407)
Q Consensus       270 ~d~~~~~lywsd~~~-~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r  339 (407)
                      +++.++.+|++.... .+.|+..++.......  ..+..|.+||+++.++.||.+.... ++|.+.++.....
T Consensus       207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~-~~i~v~D~~t~~~  278 (301)
T d1l0qa2         207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFC-NTVSVIDTATNTI  278 (301)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEE
T ss_pred             ccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCC-CeEEEEECCCCeE
Confidence            999999999886543 2578888887655433  3444899999999999999999988 8999999876643

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.3e-11  Score=78.13  Aligned_cols=40  Identities=30%  Similarity=0.875  Sum_probs=36.0

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      ++|+|.. +|++|+|+|+++++       +|+|.|+.||.|. |+++|.
T Consensus         1 G~neC~~-~nggC~h~C~n~~g-------~~~C~C~~Gy~L~-d~~tC~   40 (40)
T d3bpse1           1 GTNECLD-NNGGCSHVCNDLKI-------GYECLCPDGFQLV-AQRRCE   40 (40)
T ss_dssp             CSCGGGT-GGGGCSSEEEECSS-------SEEEECCTTCCEE-TTTEEC
T ss_pred             CcccCCC-CCCCCcCEEEcCCC-------CEEEECCCCCEEC-CCCcCC
Confidence            4689998 89999999999987       5999999999995 889984

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.8e-11  Score=82.41  Aligned_cols=43  Identities=37%  Similarity=0.750  Sum_probs=37.1

Q ss_pred             ccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccccccee
Q psy950          184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY  233 (407)
Q Consensus       184 C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~  233 (407)
                      |.. +||||+|+|++.+++      +|+|+|+.||.|++|+++|....+|
T Consensus         2 C~~-~NGGC~h~C~~~~~~------~~~C~C~~Gy~L~~D~~tC~~~~~f   44 (53)
T d2bz6l1           2 CVN-ENGGCEQYCSDHTGT------KRSCRCHEGYSLLADGVSCTPTVEY   44 (53)
T ss_dssp             TTS-GGGGCSSEEEEETTT------EEEEECCTTEEECTTSSCEEECSSS
T ss_pred             CCC-CCCCCcCEeeeCCCC------CEEeECCCCCEECCCCCcccCCCcc
Confidence            666 899999999999874      6899999999999999999855443

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.1e-11  Score=80.31  Aligned_cols=42  Identities=29%  Similarity=0.691  Sum_probs=36.8

Q ss_pred             ccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccccccee
Q psy950          184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY  233 (407)
Q Consensus       184 C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~  233 (407)
                      |+. +||+|+|+|+++++       +|+|.|+.||.|.+|+++|...++|
T Consensus         2 C~~-~NGgC~~~C~~~~g-------~~~C~C~~Gy~L~~D~~tC~~~~~~   43 (50)
T d1autl2           2 CSL-DNGGCTHYCLEEVG-------WRRCSCAPGYKLGDDLLQCHPAVKF   43 (50)
T ss_dssp             SSS-GGGGCSSEEEECSS-------SEEEECCTTEEECTTSSCEEECSSS
T ss_pred             CCC-CCCCcccEeecCCC-------CeEEECCCCCEECCCCCccccCCCC
Confidence            666 89999999999987       5999999999999999999865443

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.3e-11  Score=82.37  Aligned_cols=43  Identities=30%  Similarity=0.648  Sum_probs=37.7

Q ss_pred             ccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccccccee
Q psy950          184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY  233 (407)
Q Consensus       184 C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~  233 (407)
                      |.. +||||+|+|++.++.      +|+|.|+.||.|.+|+++|...++|
T Consensus         3 C~~-~NGgC~h~C~~~~~~------~~~C~C~~Gy~L~~D~~tC~~~~~f   45 (57)
T d1rfnb_           3 CNI-KNGRCEQFCKNSADN------KVVCSCTEGYRLAENQKSCEPAVPF   45 (57)
T ss_dssp             TTG-GGGGCSSEEEECTTS------CEEEECCTTEEECTTSSSEEECSSS
T ss_pred             cCC-CCCCcccEeeeCCCC------CeEeECCCCCEECCCCCccccCCCc
Confidence            666 899999999998764      6999999999999999999865554

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=5.1e-11  Score=76.08  Aligned_cols=40  Identities=25%  Similarity=0.520  Sum_probs=35.2

Q ss_pred             CCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       182 n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      |+|...++++|+|+|+++++       +|+|.|+.||.|.+|+++|.
T Consensus         1 dEC~~~~~~~C~~~C~n~~G-------sy~C~C~~Gy~L~~d~~tC~   40 (42)
T d1nzia2           1 NECTDFVDVPCSHFCNNFIG-------GYFCSCPPEYFLHDDMKNCG   40 (42)
T ss_dssp             CTTTC-CCCCSSSEEEEETT-------EEEEECCTTCEECTTSSCEE
T ss_pred             CCCCCCCCcCCCCEeecCCC-------CEEEeCCCCCEECCCCCeec
Confidence            57874357899999999997       69999999999999999996

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.9e-11  Score=80.16  Aligned_cols=42  Identities=33%  Similarity=0.730  Sum_probs=37.1

Q ss_pred             ccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccccccee
Q psy950          184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY  233 (407)
Q Consensus       184 C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~  233 (407)
                      |.. +||+|+|+|++.++       +|+|.|+.||.|++|+++|.+..+|
T Consensus         3 C~~-~NGgC~h~C~n~~g-------~~~C~C~~Gy~L~~D~~tC~~~~~~   44 (51)
T d2p3ua1           3 CSL-DNGDCDQFCHEEQN-------SVVCSCARGYTLADNGKACIPTGPY   44 (51)
T ss_dssp             GGT-GGGGCSSEEEEETT-------EEEEECCTTEEECTTSSCEEESSSS
T ss_pred             cCC-CCCCcccEeecCCC-------CeEeEcCCCCEECCCCCccccCCcc
Confidence            666 89999999999987       6999999999999999999865544

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.98  E-value=5.7e-11  Score=79.49  Aligned_cols=42  Identities=33%  Similarity=0.831  Sum_probs=36.6

Q ss_pred             ccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccccccee
Q psy950          184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY  233 (407)
Q Consensus       184 C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~  233 (407)
                      |.. +||+|+|+|++.++       +|+|.|+.||.|++|+++|.+.++|
T Consensus         1 C~~-~NGgC~h~C~~~~~-------~~~C~C~~Gy~L~~D~~tC~~~~~~   42 (51)
T d1kigl_           1 CSL-DNGGCDQFCREERS-------EVRCSCAHGYVLGDDSKSCVSTERF   42 (51)
T ss_dssp             CCT-TTTSSSSCCCEETT-------EECCCCCTTEEECTTSSCEEECSSS
T ss_pred             CCC-CCCCcccEeEcCCC-------cEEeEcCCCCEECCCCCccccCCcc
Confidence            555 89999999999876       6999999999999999999865544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.90  E-value=3.1e-07  Score=84.47  Aligned_cols=120  Identities=11%  Similarity=-0.004  Sum_probs=91.5

Q ss_pred             EEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCC---CCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEE
Q psy950           26 KLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDG---SKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQ  102 (407)
Q Consensus        26 ~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG---~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  102 (407)
                      ..+......|.+||+++. |.||.+++... +|.+..+++   +............|+++++|+ .+++|+++...+.|.
T Consensus        61 ~~~~~~~~~~~gla~~~d-G~l~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~  137 (302)
T d2p4oa1          61 QIHATVEGKVSGLAFTSN-GDLVATGWNAD-SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIW  137 (302)
T ss_dssp             EEEEECSSEEEEEEECTT-SCEEEEEECTT-SCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEE
T ss_pred             EEEEcCCCCcceEEEcCC-CCeEEEecCCc-eEEEEEecccccceeeccccCCccccceeEEcc-CCCEEeeccccccce
Confidence            334445567999999997 77999998764 565555543   333333334567899999998 479999999999999


Q ss_pred             EEecCCCeEEEEc-----------cCCCCceEEEEeCCEEEEEeCCCCeEEEEecCC
Q psy950          103 KISYNGGNRQIIR-----------RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       103 ~~~~dG~~~~~~~-----------~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~  148 (407)
                      .++.++....+..           .....|.||+.+++.+|+++...+.|.+++...
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~  194 (302)
T d2p4oa1         138 LIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDS  194 (302)
T ss_dssp             EEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCT
T ss_pred             eeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccc
Confidence            9999887665432           235677899999999999999999999888664

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=9.8e-07  Score=80.24  Aligned_cols=116  Identities=10%  Similarity=-0.019  Sum_probs=85.3

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCe--EEEEe-CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCC
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKW--TSIVS-NGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNG  108 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~--~~l~~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG  108 (407)
                      -..|++||+.|...+||.+..... .|...+++....  +.+.. .....|.+|++++.++.||+++.....|.....+.
T Consensus        36 ~~~v~~la~spDG~~L~v~~~~d~-~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~  114 (333)
T d1ri6a_          36 PGQVQPMVVSPDKRYLYVGVRPEF-RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED  114 (333)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTT-EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCEeEEEEeCCCCEEEEEECCCC-eEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccc
Confidence            367999999999999999987654 787777764432  22222 23457999999999999999999888888877776


Q ss_pred             CeEEEE---ccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCC
Q psy950          109 GNRQII---RRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       109 ~~~~~~---~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~  148 (407)
                      ......   ......|.++++..  ..+|+.+.....|...+...
T Consensus       115 ~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_         115 GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccceecccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence            554332   24556777777754  68999988888776665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.87  E-value=1.5e-06  Score=79.68  Aligned_cols=221  Identities=10%  Similarity=0.060  Sum_probs=145.4

Q ss_pred             cceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEE
Q psy950           35 NTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQII  114 (407)
Q Consensus        35 P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~  114 (407)
                      -.|-..|+..+.|||+|.... +|.|.+.++...++... . ..|.+++.+.. ++|+++..  +.|...+.++...+.+
T Consensus        20 gEgp~wd~~~~~l~wvDi~~~-~I~r~d~~~g~~~~~~~-~-~~~~~i~~~~d-g~l~va~~--~gl~~~d~~tg~~~~l   93 (295)
T d2ghsa1          20 GEGPTFDPASGTAWWFNILER-ELHELHLASGRKTVHAL-P-FMGSALAKISD-SKQLIASD--DGLFLRDTATGVLTLH   93 (295)
T ss_dssp             EEEEEEETTTTEEEEEEGGGT-EEEEEETTTTEEEEEEC-S-SCEEEEEEEET-TEEEEEET--TEEEEEETTTCCEEEE
T ss_pred             eeCCeEECCCCEEEEEECCCC-EEEEEECCCCeEEEEEC-C-CCcEEEEEecC-CCEEEEEe--CccEEeecccceeeEE
Confidence            367789999999999998764 99999999876654432 2 37899999874 67777754  5799999887766655


Q ss_pred             c-----cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCC
Q psy950          115 R-----RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTG  188 (407)
Q Consensus       115 ~-----~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~  188 (407)
                      .     .....|.++.++. +.+|+++.....       .    ...            -.+++                
T Consensus        94 ~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~-------~----~~~------------g~l~~----------------  134 (295)
T d2ghsa1          94 AELESDLPGNRSNDGRMHPSGALWIGTMGRKA-------E----TGA------------GSIYH----------------  134 (295)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTC-------C----TTC------------EEEEE----------------
T ss_pred             eeeecCCCcccceeeEECCCCCEEEEeccccc-------c----ccc------------eeEee----------------
Confidence            3     1234566777776 667666432110       0    000            00000                


Q ss_pred             cccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEEE
Q psy950          189 NGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGV  268 (407)
Q Consensus       189 ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~al  268 (407)
                                                     + .++                .+..+             ...+..+-++
T Consensus       135 -------------------------------~-~~g----------------~~~~~-------------~~~~~~~Ng~  153 (295)
T d2ghsa1         135 -------------------------------V-AKG----------------KVTKL-------------FADISIPNSI  153 (295)
T ss_dssp             -------------------------------E-ETT----------------EEEEE-------------EEEESSEEEE
T ss_pred             -------------------------------e-cCC----------------cEEEE-------------eeccCCccee
Confidence                                           0 000                00000             0011223467


Q ss_pred             EEEcCCCEEEEEEecCCceEEEEeCCCCccc------c-----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCC
Q psy950          269 EFDYADDKILFTQIRPWAKIAWIPTTNPSSA------S-----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNP  337 (407)
Q Consensus       269 d~d~~~~~lywsd~~~~~~I~~~~~~~~~~~------~-----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~  337 (407)
                      .+++.++.+||+|... ++|++..++.....      .     +....|.||++|-- +|||.+.... +.|.+++.+|.
T Consensus       154 ~~s~d~~~l~~~dt~~-~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~-GnlWva~~~~-g~V~~~dp~G~  230 (295)
T d2ghsa1         154 CFSPDGTTGYFVDTKV-NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE-GHIWNARWGE-GAVDRYDTDGN  230 (295)
T ss_dssp             EECTTSCEEEEEETTT-CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT-SCEEEEEETT-TEEEEECTTCC
T ss_pred             eecCCCceEEEeeccc-ceeeEeeecccccccccceEEEeccCcccccccceEEcCC-CCEEeeeeCC-CceEEecCCCc
Confidence            7888899999999988 88999887643211      0     22237999999974 5799998888 78999998887


Q ss_pred             cc--cccCCCceeEEEEc-CCCCeEEEEeC
Q psy950          338 SS--ASSNLTNVVGVEFD-YADDKILFTQI  364 (407)
Q Consensus       338 ~r--l~~~l~~P~~iavd-p~~g~lywtd~  364 (407)
                      ..  +.--..+|..++.- |....||.|-.
T Consensus       231 ~~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         231 HIARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence            42  33344689999996 66788999964

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=5.2e-10  Score=71.16  Aligned_cols=40  Identities=30%  Similarity=0.698  Sum_probs=35.4

Q ss_pred             CCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      .|+|..  +++|+|+|+++++       +|+|.|+.||.|.+|+++|.+
T Consensus         1 idEC~~--~~~C~~~C~n~~G-------sy~C~C~~Gy~L~~d~~~C~a   40 (41)
T d1i0ua2           1 IDECQD--PDTCSQLCVNLEG-------GYKCQCEEGFQLDPHTKACKA   40 (41)
T ss_dssp             CCTTTT--TTSCSSCEECSSS-------CCEECCCTTEEECTTTCCEEE
T ss_pred             CccCCC--CCCCCCEeECCCC-------CEEeECCCCCeECCCCCcccc
Confidence            378974  6899999999987       599999999999999999963

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.81  E-value=1.1e-06  Score=82.99  Aligned_cols=137  Identities=12%  Similarity=0.079  Sum_probs=84.8

Q ss_pred             EEEEEeeeeecCCcceE--EEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCC
Q psy950           10 LIWAIRLALRLLKKKKK--LKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQ   87 (407)
Q Consensus        10 ~~~s~~~~~~~~~~~~~--l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~   87 (407)
                      -||....+...+....+  ........|..||++|.+++||-++.+.. .....+-++..........-..|..+++++.
T Consensus        15 ~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~   93 (365)
T d1jofa_          15 AIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKW-SSFAVKSPTEIVHEASHPIGGHPRANDADTN   93 (365)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEE-EEEEEEETTEEEEEEEEECCSSGGGGCTTSC
T ss_pred             CEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeCCcE-EEEEEeCCCCeEEEeeecCCCCcEEEEECCC
Confidence            47777777666654322  22234455789999999999999987532 3333333444333322223357999999999


Q ss_pred             CCeEEEEeCC--CCeEEEEec--------------CCCeEE----EEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEe
Q psy950           88 THDVYWVDAK--LDLIQKISY--------------NGGNRQ----IIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKAS  145 (407)
Q Consensus        88 ~~~lYw~d~~--~~~I~~~~~--------------dG~~~~----~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~  145 (407)
                      ++.+|.+...  .+.+....+              .+..-.    .-.+...||.++++.+  .+||.+|....+|...+
T Consensus        94 ~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~  173 (365)
T d1jofa_          94 TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHR  173 (365)
T ss_dssp             CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            9999987653  344444332              221111    1124567889999965  68999998888777665


Q ss_pred             cC
Q psy950          146 KL  147 (407)
Q Consensus       146 ~~  147 (407)
                      ..
T Consensus       174 ~~  175 (365)
T d1jofa_         174 KL  175 (365)
T ss_dssp             EC
T ss_pred             cc
Confidence            33

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=6.2e-06  Score=74.69  Aligned_cols=259  Identities=9%  Similarity=0.007  Sum_probs=153.6

Q ss_pred             CCEEEEEEcCCCCeEEEEeCCCCCeEEEEe--CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE--EEEc--cC
Q psy950           44 PRLLYWIDYGQYPRIGKSYLDGSKWTSIVS--NGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR--QIIR--RN  117 (407)
Q Consensus        44 ~g~lywtd~~~~~~I~r~~~dG~~~~~l~~--~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~--~~~~--~~  117 (407)
                      +..+|.+....+ +|...+++......+++  ..-..|.+|++.+.++.||.+....+.|...+++....  +...  ..
T Consensus         3 ~~~v~v~~~~~~-~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~   81 (333)
T d1ri6a_           3 KQTVYIASPESQ-QIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   81 (333)
T ss_dssp             EEEEEEEEGGGT-EEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             ceEEEEECCCCC-cEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc
Confidence            456889987765 88888887554322222  12357999999999999999999889998877764432  2222  45


Q ss_pred             CCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcc--cCCCCceeeEEeeecCCCCCCCCCccCCCccccc
Q psy950          118 LPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIR--TGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCE  193 (407)
Q Consensus       118 ~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~--~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs  193 (407)
                      ...|.+|++.+  .+||.++.....|....... .  .......  .....|.++                         
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~-~--~~~~~~~~~~~~~~~~~v-------------------------  133 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED-G--LPVGVVDVVEGLDGCHSA-------------------------  133 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEET-T--EEEEEEEEECCCTTBCCC-------------------------
T ss_pred             CCCceEEEEcCCCCEEeecccCCCceeeecccc-c--cceecccccCCCccceEE-------------------------
Confidence            56899999976  58999988777766555443 1  0111100  000001100                         


Q ss_pred             ccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeee--cccceEEeecCCCCC----eeeeEeecCCcceEE
Q psy950          194 QLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFS--TRTEIRALHLDPTLT----AVPFKTVSNLTNVVG  267 (407)
Q Consensus       194 ~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s--~~~~I~~i~l~~~~~----~~~~~~~~~~~~~~a  267 (407)
                                               .+.+|++.       ++.+  ....|....+.....    ............+..
T Consensus       134 -------------------------~~s~d~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~  181 (333)
T d1ri6a_         134 -------------------------NISPDNRT-------LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH  181 (333)
T ss_dssp             -------------------------EECTTSSE-------EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEE
T ss_pred             -------------------------Eeeeccee-------eeccccccceeeEEEeccCCcceeeeceeeeeecCCCccE
Confidence                                     11122210       0000  011122222221110    011112223455677


Q ss_pred             EEEEcCCCEEEEEEecCCceEEEEeCCCCcc--c------------ccCCCCccEEEEeccCCeEEEEeCCCCCeEEEEE
Q psy950          268 VEFDYADDKILFTQIRPWAKIAWIPTTNPSS--A------------SSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIP  333 (407)
Q Consensus       268 ld~d~~~~~lywsd~~~~~~I~~~~~~~~~~--~------------~~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~  333 (407)
                      +.++..+..+|++.... .............  .            .... .+.++++.+.++.+|.+.... +.+.+..
T Consensus       182 i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~d~~~~~~~~~~~-~~~~~~~  258 (333)
T d1ri6a_         182 MVFHPNEQYAYCVNELN-SSVDVWELKDPHGNIECVQTLDMMPENFSDTR-WAADIHITPDGRHLYACDRTA-SLITVFS  258 (333)
T ss_dssp             EEECTTSSEEEEEETTT-TEEEEEESSCTTSCCEEEEEEECSCTTCCSCC-CEEEEEECTTSSEEEEEETTT-TEEEEEE
T ss_pred             EEEeccceeEEeecccc-CceEEEeecccccceeeeeeeeeeecCCCccc-cceeEEEecccCceeeecccC-CeEEEEE
Confidence            88999999999988766 5444444332210  0            0223 678899999999999998888 7787776


Q ss_pred             CCCCcc------cccCCCceeEEEEcCCCCeEEEEeCCC
Q psy950          334 TTNPSS------ASSNLTNVVGVEFDYADDKILFTQIRP  366 (407)
Q Consensus       334 ~~~~~r------l~~~l~~P~~iavdp~~g~lywtd~~~  366 (407)
                      ++....      .......|++|++.|-..+||.++...
T Consensus       259 ~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~  297 (333)
T d1ri6a_         259 VSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS  297 (333)
T ss_dssp             ECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT
T ss_pred             EcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCC
Confidence            654432      123447899999999988999987533

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=1.5e-09  Score=70.55  Aligned_cols=39  Identities=26%  Similarity=0.732  Sum_probs=31.6

Q ss_pred             CCccCCCccc---ccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          182 NPCFRTGNGG---CEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       182 n~C~~~~ng~---Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      |+|.. +|++   |+|+|+++++       +|.|.|+.||.|..|+++|.
T Consensus         2 dEC~~-~~~~~~~C~~~C~Nt~g-------sy~C~C~~Gy~L~~d~~tC~   43 (45)
T d1nt0a3           2 DECRT-SLGDSVPCDHYCHNYLG-------GYYCSCRVGYILHQNKHTCS   43 (45)
T ss_dssp             CTTC--------CCSSEEEEETT-------EEEEECCTTEEECTTSSCEE
T ss_pred             cCCcc-CCCCcCCCCCEeecCCC-------CEEEeCCCCCEECCCCCccc
Confidence            67876 5554   9999999997       69999999999999999996

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.9e-09  Score=70.04  Aligned_cols=40  Identities=20%  Similarity=0.616  Sum_probs=34.9

Q ss_pred             CCccCCCcc---cccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          182 NPCFRTGNG---GCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       182 n~C~~~~ng---~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      |+|.. .++   +|+|+|+++++       +|+|.|+.||.|..|+++|.+
T Consensus         2 dEC~~-~~~~~~~C~~~C~Nt~G-------sy~C~C~~Gy~l~~d~~tC~D   44 (45)
T d1szba2           2 DECQV-APGEAPTCDHHCHNHLG-------GFYCSCRAGYVLHRNKRTCSE   44 (45)
T ss_dssp             CTTCC-CTTSCCSSSSEEEEETT-------EEEEECCTTEEECTTSSCEEE
T ss_pred             cCCcC-CCCCCCCCCCCCccCCC-------CeEEECCCCCeECCCCCCccC
Confidence            67876 554   79999999998       699999999999999999963

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=8.6e-09  Score=66.21  Aligned_cols=41  Identities=22%  Similarity=0.485  Sum_probs=37.2

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      ..|+|+. .++.|+|.|+++++       +|.|.|+.||.|.+++++|.
T Consensus         2 DidEC~~-~~~~c~~~C~Nt~G-------~y~C~C~~Gy~l~~d~~~C~   42 (43)
T d1uzka1           2 DVNECLD-PTTCISGNCVNTPG-------SYICDCPPDFELNPTRVGCV   42 (43)
T ss_dssp             CCCGGGS-TTSSBTSEEEEETT-------EEEEECCTTCEECTTSSBEE
T ss_pred             CccccCC-CCcCcCCEeECCCC-------CEEEecCCCCEECCCCCccc
Confidence            4689987 78889999999998       69999999999999999996

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=7.3e-08  Score=64.79  Aligned_cols=32  Identities=31%  Similarity=0.781  Sum_probs=29.5

Q ss_pred             ccccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          190 GGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       190 g~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      .+|+|+|+++++       +|.|.|+.||.|..|+++|.
T Consensus        20 ~~c~~~C~Nt~G-------sY~C~C~~Gy~l~~d~~tC~   51 (53)
T d1apqa_          20 PQCQHLCHNYVG-------GYFCSCRPGYELQEDRHSCQ   51 (53)
T ss_dssp             CTTSSEEEEETT-------EEEEECSTTCEECTTSSCEE
T ss_pred             CCccCEeEcCCC-------CeEeECCCCCeECCCCCcee
Confidence            468999999998       69999999999999999996

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.39  E-value=7e-05  Score=70.23  Aligned_cols=117  Identities=9%  Similarity=0.000  Sum_probs=79.0

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCC-CCeEEEEeC--------------CCCCeEEEE---eCCCCCceeEEEeCCCCeEEE
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQ-YPRIGKSYL--------------DGSKWTSIV---SNGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~-~~~I~r~~~--------------dG~~~~~l~---~~~~~~P~glaiD~~~~~lYw   93 (407)
                      -..|..+++++..+.+|.+.... ...+....+              +|..-....   ...-..|+++++++.+++||+
T Consensus        82 ~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v  161 (365)
T d1jofa_          82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEE
Confidence            45699999999999898876431 124443332              221111111   112235789999999999999


Q ss_pred             EeCCCCeEEEEecCCCeEEE----E--ccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCC
Q psy950           94 VDAKLDLIQKISYNGGNRQI----I--RRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus        94 ~d~~~~~I~~~~~dG~~~~~----~--~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~  148 (407)
                      +|.+.++|...+.+......    +  ......|+++++.+  .++|.+....+.|...+.+.
T Consensus       162 ~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             eeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            99999999888765432211    1  13467999999977  58999988888877666554

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=4.1e-08  Score=62.50  Aligned_cols=40  Identities=23%  Similarity=0.620  Sum_probs=35.1

Q ss_pred             CCCccCCCcccccc-cceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          181 NNPCFRTGNGGCEQ-LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~-lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      .|+|.. +++.|.| .|+++++       +|.|.|+.||.|.+|+++|.
T Consensus         2 idEC~~-~~~~C~~~~C~Nt~G-------sy~C~C~~Gy~l~~d~~~Cv   42 (42)
T d1lmja2           2 IDECQR-DPLLCRGGVCHNTEG-------SYRCECPPGHQLSPNISACI   42 (42)
T ss_dssp             CCHHHH-CSSTTTTSEEEEETT-------EEEEESCTTSCCCSSSCCCC
T ss_pred             ccccCC-CCCCCCCCEeECCCC-------CeEEeCCCCCeECcCCCccC
Confidence            478877 6788887 9999998       69999999999999999984

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=7.4e-08  Score=61.60  Aligned_cols=41  Identities=24%  Similarity=0.577  Sum_probs=35.4

Q ss_pred             CCCCccCCCccccc-ccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          180 ENNPCFRTGNGGCE-QLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs-~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      ..|+|.. .++.|. |.|+++++       +|.|.|+.||.|..++++|.
T Consensus         2 DinEC~~-~~~~c~~~~C~Nt~G-------sy~C~C~~Gy~l~~~~~~Ce   43 (43)
T d1uzka2           2 DIDECQE-LPGLCQGGKCINTFG-------SFQCRCPTGYYLNEDTRVCD   43 (43)
T ss_dssp             ECCHHHH-CGGGGBTSEEEECSS-------CEEEECCTTCCBCTTTCBBC
T ss_pred             CcccccC-CCCCcCCCEEECCCC-------CeEeECCCCCeECcCCCccC
Confidence            4588986 677775 89999998       59999999999999999984

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.22  E-value=1.3e-05  Score=73.22  Aligned_cols=108  Identities=12%  Similarity=-0.001  Sum_probs=86.7

Q ss_pred             EcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCC------eEEEEeC--CCCCceeEEEeCCCCeEEEEeCCCC
Q psy950           28 KTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSK------WTSIVSN--GISMPRDLTIDMQTHDVYWVDAKLD   99 (407)
Q Consensus        28 ~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~------~~~l~~~--~~~~P~glaiD~~~~~lYw~d~~~~   99 (407)
                      +..++..|-++++++....|||+|.... +|++.++|+..      +...+..  ....|.|+++|. .++||++....+
T Consensus       143 ~~~~~~~~Ng~~~s~d~~~l~~~dt~~~-~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g  220 (295)
T d2ghsa1         143 LFADISIPNSICFSPDGTTGYFVDTKVN-RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEG  220 (295)
T ss_dssp             EEEEESSEEEEEECTTSCEEEEEETTTC-EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTT
T ss_pred             EeeccCCcceeeecCCCceEEEeecccc-eeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCC
Confidence            3355778999999999999999999875 99999998643      3333332  345799999998 568999999999


Q ss_pred             eEEEEecCCCeEEEEccCCCCceEEEEeC---CEEEEEeCC
Q psy950          100 LIQKISYNGGNRQIIRRNLPNPMGIAVHK---SDVYWVDRN  137 (407)
Q Consensus       100 ~I~~~~~dG~~~~~~~~~~~~P~~lav~~---~~lYwtd~~  137 (407)
                      +|.+.+.+|.....+.-...+|..+++-+   +.||.|...
T Consensus       221 ~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         221 AVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             ceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            99999999988877665557899999865   789999654

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.1e-07  Score=59.25  Aligned_cols=38  Identities=24%  Similarity=0.639  Sum_probs=31.3

Q ss_pred             CCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccC-CCCcc
Q psy950          181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSAS-DPKKC  227 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~-d~~~C  227 (407)
                      .|+|+.  +++|+|+|+++++       +|.|.|+.||.|+. +++.|
T Consensus         2 idEC~~--~~~C~~~C~N~~G-------sy~C~C~~Gy~l~g~~~~~C   40 (40)
T d1dx5i3           2 IDECEN--GGFCSGVCHNLPG-------TFECICGPDSALAGQIGTDC   40 (40)
T ss_dssp             CCHHHH--CSSCSSEEEECSS-------SEEEEECSSSSCEEEESCCC
T ss_pred             ccccCC--CcCccCEeeCCCC-------CeEeECCCCCeeCCCCCCCC
Confidence            478864  6899999999998       59999999999863 56655

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=6.6e-07  Score=57.10  Aligned_cols=41  Identities=24%  Similarity=0.594  Sum_probs=34.8

Q ss_pred             CCCCccCCCcccccc-cceecCCCCCCCCcceEEecCCCcccc-CCCCccc
Q psy950          180 ENNPCFRTGNGGCEQ-LCFSYPVEFPQNKLHYKCDCATGTPSA-SDPKKCT  228 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~-lC~~~~~~~~~~~~~~~C~C~~G~~l~-~d~~~C~  228 (407)
                      ..|+|.. ++..|+| .|+++++       +|+|.|+.||.++ .++++|.
T Consensus         2 DidEC~~-~~~~C~~~~C~Nt~G-------sy~C~C~~Gy~~~~~~g~~Cv   44 (44)
T d1lmja1           2 DIDECRI-SPDLCGRGQCVNTPG-------DFECKCDEGYESGFMMMKNCM   44 (44)
T ss_dssp             CCCTTTT-CSSTTTTSCEEEETT-------EEEECCCSSEEECTTTSSSEE
T ss_pred             cccccCC-CCCCCCCCEeEcCCC-------CeEEeCCCCCccCCCCCCcCC
Confidence            4689987 7788887 9999998       6999999999986 5788884

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.8e-06  Score=54.93  Aligned_cols=39  Identities=18%  Similarity=0.465  Sum_probs=33.3

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      ..|+|.. ++..|.+.|+++++       +|.|.|+.||.|  ++++|.
T Consensus         4 DidEC~~-~~~~~~~~C~Nt~G-------sy~C~C~~Gy~~--~g~~C~   42 (43)
T d1emoa1           4 DMDECKE-PDVCKHGQCINTDG-------SYRCECPFGYIL--AGNECV   42 (43)
T ss_dssp             CCCSSSS-TTSCSSSCCCCCSS-------CCCCCCCTTEEE--SSSCEE
T ss_pred             ceeccCC-cCCCCCCEeECCCC-------CeEeECCCCccc--CCCccc
Confidence            5689987 77889999999998       599999999986  466775

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.74  E-value=0.018  Score=54.22  Aligned_cols=198  Identities=8%  Similarity=-0.063  Sum_probs=125.9

Q ss_pred             CEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEE--ccCCCCce
Q psy950           45 RLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQII--RRNLPNPM  122 (407)
Q Consensus        45 g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~--~~~~~~P~  122 (407)
                      ..++.+..+.. +|...+++.......+..+ ..|.++++.+.+++||.+.. .+.|...+++....+.+  ......|.
T Consensus        32 ~~~~v~~~d~g-~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~~~~~~~i~~~~~~~  108 (432)
T d1qksa2          32 NLFSVTLRDAG-QIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIGSEAR  108 (432)
T ss_dssp             GEEEEEETTTT-EEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred             cEEEEEEcCCC-EEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCCceEEEEEecCCCCC
Confidence            35567777664 8999998877666666655 47999999999999999864 57899999875443222  24567888


Q ss_pred             EEEEe------CCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccc
Q psy950          123 GIAVH------KSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLC  196 (407)
Q Consensus       123 ~lav~------~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC  196 (407)
                      ++++.      +.+||.+....+.|...+..+ +.  ...             ++..       ......          
T Consensus       109 ~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t-~~--~~~-------------~~~~-------~~~~~~----------  155 (432)
T d1qksa2         109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGET-LE--PKK-------------IQST-------RGMTYD----------  155 (432)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTT-CC--EEE-------------EEEC-------CEECTT----------
T ss_pred             CeEEecccCCCCCEEEEEcCCCCeEEEEeCcc-cc--cee-------------eecc-------CCcccc----------
Confidence            88864      357888776666666666543 11  000             0000       000000          


Q ss_pred             eecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCE
Q psy950          197 FSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDK  276 (407)
Q Consensus       197 ~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~  276 (407)
                                          ...+.+                                       .....++.+.+.+..
T Consensus       156 --------------------~~~~~~---------------------------------------~~~~~~v~~s~dg~~  176 (432)
T d1qksa2         156 --------------------EQEYHP---------------------------------------EPRVAAILASHYRPE  176 (432)
T ss_dssp             --------------------TCCEES---------------------------------------CCCEEEEEECSSSSE
T ss_pred             --------------------ceeccC---------------------------------------CCceeEEEECCCCCE
Confidence                                000000                                       011234555666667


Q ss_pred             EEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc
Q psy950          277 ILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS  339 (407)
Q Consensus       277 lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r  339 (407)
                      +|++.... +.|..++........    ..+..|.++++++.++.+|.+.... +.|.+++.+....
T Consensus       177 ~~vs~~~~-~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~-~~v~v~d~~~~~~  241 (432)
T d1qksa2         177 FIVNVKET-GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR-NKLVVIDTKEGKL  241 (432)
T ss_dssp             EEEEETTT-TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG-TEEEEEETTTTEE
T ss_pred             EEEEEccC-CeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecccc-ceEEEeecccceE
Confidence            77766665 667666655433211    3444889999999999999999888 8999999887653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.73  E-value=0.012  Score=51.61  Aligned_cols=120  Identities=10%  Similarity=-0.027  Sum_probs=79.2

Q ss_pred             eeeeecCCcceEEE---cCC-CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCC-----CCCceeEEEe
Q psy950           15 RLALRLLKKKKKLK---TSF-RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNG-----ISMPRDLTID   85 (407)
Q Consensus        15 ~~~~~~~~~~~~l~---~~~-~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~-----~~~P~glaiD   85 (407)
                      ++...|....+++-   ... ...|.+|++.|..++||.+.... ..|...++.......-+...     ...|.++++.
T Consensus        12 ~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~-~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s   90 (337)
T d1pbyb_          12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS-ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS   90 (337)
T ss_dssp             EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT-TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC
T ss_pred             EEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCC-CeEEEEECCCCcEEEEEecCCCcccccceeeEEEc
Confidence            45566666544432   222 34699999999999999987665 48999888754433323211     2367899999


Q ss_pred             CCCCeEEEEeC-----------CCCeEEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEe
Q psy950           86 MQTHDVYWVDA-----------KLDLIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVD  135 (407)
Q Consensus        86 ~~~~~lYw~d~-----------~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd  135 (407)
                      +.++.+|++..           ....+...+...............|.++++..  .++|..+
T Consensus        91 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  153 (337)
T d1pbyb_          91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES
T ss_pred             CCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc
Confidence            99999999875           23456666666554433333456788898865  5777764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.63  E-value=0.012  Score=53.61  Aligned_cols=85  Identities=6%  Similarity=-0.047  Sum_probs=60.8

Q ss_pred             EEEEcCCCEEEEEEecC-------CceEEEEeCCCCcccc--cCCCCccEEEEeccCC-eEEEEeCCCCCeEEEEECCCC
Q psy950          268 VEFDYADDKILFTQIRP-------WAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADD-KILFTQIRPWAKIAWIPTTNP  337 (407)
Q Consensus       268 ld~d~~~~~lywsd~~~-------~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~-~LYwtd~~~~~~I~v~~~~~~  337 (407)
                      +.+.+..+.+|+.....       ..+|..++..+.....  ..+..+.++++.+.++ .||-+.... ++|.+.+....
T Consensus       269 ~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~-~~v~v~D~~tg  347 (368)
T d1mdah_         269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT-EVLDIYDAASD  347 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTT-TEEEEEESSSC
T ss_pred             EEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCC-CeEEEEECCCC
Confidence            56788899999986543       1357777777654433  3334788999999887 478898888 89999998766


Q ss_pred             ccc--ccCCCceeEEEEc
Q psy950          338 SSA--SSNLTNVVGVEFD  353 (407)
Q Consensus       338 ~rl--~~~l~~P~~iavd  353 (407)
                      +.+  +.--..|.+|+|=
T Consensus       348 k~~~~i~~g~~P~~l~~~  365 (368)
T d1mdah_         348 QDQSSVELDKGPESLSVQ  365 (368)
T ss_dssp             EEEEECCCCSCCCEEECC
T ss_pred             CEEEEEECCCCCCEEEEe
Confidence            543  2333579999984

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.63  E-value=0.03  Score=53.27  Aligned_cols=66  Identities=14%  Similarity=0.259  Sum_probs=48.1

Q ss_pred             CeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEcc---C------CCCceEEEEeC-----CEEE
Q psy950           67 KWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRR---N------LPNPMGIAVHK-----SDVY  132 (407)
Q Consensus        67 ~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~---~------~~~P~~lav~~-----~~lY  132 (407)
                      ..+++. +++..|.+|++.+ .++||+++...++|.+++.++...+.+..   .      ..-..||+++.     +++|
T Consensus        18 ~~~~ia-~~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iY   95 (450)
T d1crua_          18 DKKVIL-SNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY   95 (450)
T ss_dssp             CEEEEE-CCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred             EEEEEE-CCCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEE
Confidence            344544 5799999999998 57899999888999999987666544431   1      12336899975     6788


Q ss_pred             EE
Q psy950          133 WV  134 (407)
Q Consensus       133 wt  134 (407)
                      ++
T Consensus        96 vs   97 (450)
T d1crua_          96 IS   97 (450)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.58  E-value=0.014  Score=55.74  Aligned_cols=48  Identities=10%  Similarity=0.092  Sum_probs=35.4

Q ss_pred             CcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEE
Q psy950           22 KKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSI   71 (407)
Q Consensus        22 ~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l   71 (407)
                      .....++..++++|++|++.|. |.||.++... .+|.+.+.++...+.+
T Consensus        16 ~f~~~~ia~~L~~P~~la~~pd-g~llVter~~-G~i~~v~~~~g~~~~i   63 (450)
T d1crua_          16 NFDKKVILSNLNKPHALLWGPD-NQIWLTERAT-GKILRVNPESGSVKTV   63 (450)
T ss_dssp             TSCEEEEECCCSSEEEEEECTT-SCEEEEETTT-CEEEEECTTTCCEEEE
T ss_pred             CcEEEEEECCCCCceEEEEeCC-CeEEEEEecC-CEEEEEECCCCcEeec
Confidence            3456677888999999999997 7899998643 4788877655444433

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.44  E-value=0.027  Score=49.51  Aligned_cols=98  Identities=8%  Similarity=0.015  Sum_probs=68.5

Q ss_pred             eEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEe-CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE-EEE
Q psy950           37 TSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVS-NGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR-QII  114 (407)
Q Consensus        37 ~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~  114 (407)
                      |+|+.+...+|+.....  .+|...+++-.....-+. .....|.+|++.+.+++||++....++|...+++.... ..+
T Consensus         1 g~a~~~~~~~l~~~~~~--~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYP--NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCCCCTTCEEEEEEETT--TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CccCCCCCcEEEEEcCC--CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence            46777777777776654  389999887432221122 23457999999999999999999999999999986554 222


Q ss_pred             c------cCCCCceEEEEeC--CEEEEEeC
Q psy950          115 R------RNLPNPMGIAVHK--SDVYWVDR  136 (407)
Q Consensus       115 ~------~~~~~P~~lav~~--~~lYwtd~  136 (407)
                      .      .....|.++++.+  .+||.+..
T Consensus        79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          79 NLSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             cccccccccCCceEEEEEecCCCEEEEEec
Confidence            2      1234688888865  67887753

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.30  E-value=0.068  Score=49.56  Aligned_cols=114  Identities=6%  Similarity=-0.134  Sum_probs=77.2

Q ss_pred             CCCcceEEEeCCC-CEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCe
Q psy950           32 RSANTTSPFSPLP-RLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN  110 (407)
Q Consensus        32 ~~~P~~iavdp~~-g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~  110 (407)
                      -..|..+++++.. ..+|.+..+. .+|...++.......-+..+ ..|.+|++.+.+++||.+.. .+.|...+++...
T Consensus        18 ~~~p~~~~~~~d~~~~~~V~~~~d-g~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~   94 (426)
T d1hzua2          18 EDRPKKQLNDLDLPNLFSVTLRDA-GQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGR-DARIDMIDLWAKE   94 (426)
T ss_dssp             GGSCSSCCSCCCGGGEEEEEETTT-TEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEET-TSEEEEEETTSSS
T ss_pred             ccCCCcccccCCCCeEEEEEEcCC-CEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeC-CCCEEEEEccCCc
Confidence            3456666666654 4556666665 48999888755544444433 47999999999999998875 4789999997555


Q ss_pred             EEEEc--cCCCCceEEEEe------CCEEEEEeCCCCeEEEEecCC
Q psy950          111 RQIIR--RNLPNPMGIAVH------KSDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       111 ~~~~~--~~~~~P~~lav~------~~~lYwtd~~~~~I~~~~~~~  148 (407)
                      ...+.  .....|.++++.      +.+||.+....+.+...+...
T Consensus        95 ~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2          95 PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             CEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             eeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc
Confidence            43322  445567777763      467888877777776666554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.12  E-value=0.084  Score=47.21  Aligned_cols=131  Identities=5%  Similarity=-0.118  Sum_probs=77.6

Q ss_pred             eeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCC--------CCeEEEEeCCCCCeEEEEeC-------CCCCc
Q psy950           15 RLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQ--------YPRIGKSYLDGSKWTSIVSN-------GISMP   79 (407)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~--------~~~I~r~~~dG~~~~~l~~~-------~~~~P   79 (407)
                      ++...|....+.+-......+.++++.|..++||.+....        ...|...+.......-.+..       ....|
T Consensus        48 ~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~  127 (373)
T d2madh_          48 QQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS  127 (373)
T ss_pred             eEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCC
Confidence            3455555544444333344555899999999999987532        12455555553332222211       12357


Q ss_pred             eeEEEeCCCCeEEEEeCCC-CeEEEEecCCCeEEEEccCCCCceEEEEe--CCEEEEEeCCCCeEEEEecCC
Q psy950           80 RDLTIDMQTHDVYWVDAKL-DLIQKISYNGGNRQIIRRNLPNPMGIAVH--KSDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus        80 ~glaiD~~~~~lYw~d~~~-~~I~~~~~dG~~~~~~~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~  148 (407)
                      .++++.+.++.+|...... +.+...+.......   .....|.++++.  +..+|.+....+.+...+...
T Consensus       128 ~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~  196 (373)
T d2madh_         128 WMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD---QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG  196 (373)
T ss_pred             CcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE---EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCC
Confidence            8899999888888776443 44444444433221   223456666654  467888888888887777654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.11  E-value=0.085  Score=47.17  Aligned_cols=112  Identities=15%  Similarity=0.082  Sum_probs=68.7

Q ss_pred             CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEE
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQ  112 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~  112 (407)
                      ..|.++++.+..+.+|...+.....+...+....  +.+-  ....|.++++.+.++.+|.+....+.+...+.++....
T Consensus       125 ~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~  200 (373)
T d2madh_         125 PYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGS--SDDQ--LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG  200 (373)
T ss_pred             cCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCC--eEEE--EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence            3578888988888887776654334444444432  2222  23368899999999999999999999999988766553


Q ss_pred             EEc-----cCCCCc--eEEEEeCCEEEEEeCCCCeEEEEecCC
Q psy950          113 IIR-----RNLPNP--MGIAVHKSDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       113 ~~~-----~~~~~P--~~lav~~~~lYwtd~~~~~I~~~~~~~  148 (407)
                      ...     .....|  ..++..++..+..-...+.+...+...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  243 (373)
T d2madh_         201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA  243 (373)
T ss_pred             EEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCC
Confidence            221     122233  334445544444434445666655443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.05  E-value=0.091  Score=46.44  Aligned_cols=112  Identities=7%  Similarity=-0.069  Sum_probs=71.2

Q ss_pred             CcceE-EEeCCCCEEEEEEcCC---CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC---------CCe
Q psy950           34 ANTTS-PFSPLPRLLYWIDYGQ---YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK---------LDL  100 (407)
Q Consensus        34 ~P~~i-avdp~~g~lywtd~~~---~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~---------~~~  100 (407)
                      .|+.+ |.-|...++|.++...   ...|+..+.+.......+..  ....++++.+.++.||+++..         .+.
T Consensus         2 ~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~--g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~   79 (355)
T d2bbkh_           2 EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG--GFLPNPVVADDGSFIAHASTVFSRIARGERTDY   79 (355)
T ss_dssp             CCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE--CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             CCcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC--CCCCceEEcCCCCEEEEEeCCCccccccCCCCE
Confidence            46555 4568889999998542   23688877764433223332  233479999999999998742         356


Q ss_pred             EEEEecCCCeE-EEEc-------cCCCCceEEEEeC--CEEEEEeCCCC-eEEEEecC
Q psy950          101 IQKISYNGGNR-QIIR-------RNLPNPMGIAVHK--SDVYWVDRNLR-TVYKASKL  147 (407)
Q Consensus       101 I~~~~~dG~~~-~~~~-------~~~~~P~~lav~~--~~lYwtd~~~~-~I~~~~~~  147 (407)
                      |...++..... ..+.       .....|.++++..  .++|..++... .+...+..
T Consensus        80 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~  137 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE  137 (355)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred             EEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecC
Confidence            88888765444 3322       2345788888865  67888876654 33334444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.63  E-value=0.038  Score=50.46  Aligned_cols=115  Identities=11%  Similarity=0.042  Sum_probs=85.0

Q ss_pred             CCcceEEEeCC---CCEEEEEEc-CCCCeEEEEeCCCCCe-E----EEEeCCCCCceeEEEeCCCCeEEEEeC-------
Q psy950           33 SANTTSPFSPL---PRLLYWIDY-GQYPRIGKSYLDGSKW-T----SIVSNGISMPRDLTIDMQTHDVYWVDA-------   96 (407)
Q Consensus        33 ~~P~~iavdp~---~g~lywtd~-~~~~~I~r~~~dG~~~-~----~l~~~~~~~P~glaiD~~~~~lYw~d~-------   96 (407)
                      -.|.||.+-..   ..+||..+. +...+|+.-.++-... .    .+....+..|+.+++.. .+.+|+++.       
T Consensus        97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~  175 (340)
T d1v04a_          97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPY  175 (340)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHH
T ss_pred             eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChh
Confidence            36999988332   347899887 3456888777763332 2    22234567899999997 567999963       


Q ss_pred             --------CCCeEEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCC
Q psy950           97 --------KLDLIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus        97 --------~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~  148 (407)
                              +.....++.+++...+++...+..|-||++.+  +.||+++....+|.+.....
T Consensus       176 ~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         176 LKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             HHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             hhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence                    12356677788888888888899999999975  69999999999998877765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.44  E-value=0.017  Score=50.77  Aligned_cols=122  Identities=7%  Similarity=0.001  Sum_probs=82.2

Q ss_pred             cceEEeecCCCCCeeeeEeec-CCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--------cCCCCccEEE
Q psy950          240 TEIRALHLDPTLTAVPFKTVS-NLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--------SNLTNVVGVE  310 (407)
Q Consensus       240 ~~I~~i~l~~~~~~~~~~~~~-~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--------~~~~~~~glA  310 (407)
                      ..|.-+.+........ .++. ....+.++.+.+.++++|.+.... +.|...++.+...+.        .....+.+++
T Consensus        11 ~~v~v~D~~s~~~~~~-i~~~~~~~~~~~i~~spDg~~l~v~~~~~-~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~   88 (337)
T d1pbyb_          11 DKLVVIDTEKMAVDKV-ITIADAGPTPMVPMVAPGGRIAYATVNKS-ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA   88 (337)
T ss_dssp             TEEEEEETTTTEEEEE-EECTTCTTCCCCEEECTTSSEEEEEETTT-TEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred             CEEEEEECCCCeEEEE-EECCCCCCCccEEEECCCCCEEEEEECCC-CeEEEEECCCCcEEEEEecCCCcccccceeeEE
Confidence            4565565544321111 2222 234567889999999999998777 889999987765432        1123688999


Q ss_pred             EeccCCeEEEEeCCC----------CCeEEEEECCCCcc--cccCCCceeEEEEcCCCCeEEEEe
Q psy950          311 FDYADDKILFTQIRP----------WAKIAWIPTTNPSS--ASSNLTNVVGVEFDYADDKILFTQ  363 (407)
Q Consensus       311 vDwi~~~LYwtd~~~----------~~~I~v~~~~~~~r--l~~~l~~P~~iavdp~~g~lywtd  363 (407)
                      +.+.++.+|+.....          ...+.+.+......  .......|.++++.|-..+||..+
T Consensus        89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  153 (337)
T d1pbyb_          89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES
T ss_pred             EcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc
Confidence            999999999987632          13566666665543  233456799999999988998764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.43  E-value=0.012  Score=54.02  Aligned_cols=99  Identities=9%  Similarity=-0.010  Sum_probs=71.0

Q ss_pred             EcCCCCCcceEEEeCCCCEEEEEEcCC--------------CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEE
Q psy950           28 KTSFRSANTTSPFSPLPRLLYWIDYGQ--------------YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYW   93 (407)
Q Consensus        28 ~~~~~~~P~~iavdp~~g~lywtd~~~--------------~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw   93 (407)
                      ....+..|-.|++... |.+|.|+...              .+.-.....|+...+++.. ++..|+||++++.++.||+
T Consensus       145 ~~~~~~~pNDv~~~~~-g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyV  222 (340)
T d1v04a_         145 RHKLLPSVNDIVAVGP-EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYI  222 (340)
T ss_dssp             CCTTCSSEEEEEEEET-TEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECTTSSEEEE
T ss_pred             CCccccCccceEEecC-CCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECCCCCEEEE
Confidence            3444667899999976 6789997421              1345566667777766654 6889999999999999999


Q ss_pred             EeCCCCeEEEEecCCCeEEEE---ccCCCCceEEEEeC
Q psy950           94 VDAKLDLIQKISYNGGNRQII---RRNLPNPMGIAVHK  128 (407)
Q Consensus        94 ~d~~~~~I~~~~~dG~~~~~~---~~~~~~P~~lav~~  128 (407)
                      ++...++|.+..+++...-..   ..-...|=.|.+++
T Consensus       223 a~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~  260 (340)
T d1v04a_         223 AELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDP  260 (340)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECT
T ss_pred             EeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEec
Confidence            999999999998887543221   12234566677754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.42  E-value=0.1  Score=46.96  Aligned_cols=111  Identities=7%  Similarity=-0.184  Sum_probs=70.1

Q ss_pred             ceEEEeCCCCEEEEEEc--CC-CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC---------CCCeEEE
Q psy950           36 TTSPFSPLPRLLYWIDY--GQ-YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA---------KLDLIQK  103 (407)
Q Consensus        36 ~~iavdp~~g~lywtd~--~~-~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~---------~~~~I~~  103 (407)
                      ..++..+..+..|.+..  .. ..+|+..+.++......+..+. .| ++++.+.++.||++..         ..+.|..
T Consensus        23 ~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v  100 (368)
T d1mdah_          23 CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEV  100 (368)
T ss_dssp             BCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEE
T ss_pred             cccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC-CC-cceECCCCCEEEEEcccCccccccccCCeEEE
Confidence            34444455555555432  21 2356666665544433343332 34 7999999999999874         2356888


Q ss_pred             EecCCCeE-EEEc-------cCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCC
Q psy950          104 ISYNGGNR-QIIR-------RNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLA  148 (407)
Q Consensus       104 ~~~dG~~~-~~~~-------~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~  148 (407)
                      ++...... ..+.       .....|.++++..  .+||.++...+.|..++...
T Consensus       101 ~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~  155 (368)
T d1mdah_         101 FDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG  155 (368)
T ss_dssp             ECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETT
T ss_pred             EECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            88875544 2221       2356788899865  68999998888888888765

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0035  Score=38.90  Aligned_cols=23  Identities=22%  Similarity=0.715  Sum_probs=18.4

Q ss_pred             cceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          195 LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       195 lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      .|++.++       +|+|.|+.||.    |..|.
T Consensus        18 ~C~n~~g-------~y~C~C~~G~~----G~~Ce   40 (42)
T d2vj3a1          18 KCINTLG-------SFECQCLQGYT----GPRCE   40 (42)
T ss_dssp             EEEECSS-------SEEEECCTTEE----STTSC
T ss_pred             EeECCCC-------CEEeECCCCCc----CCCCc
Confidence            6777766       69999999997    66774

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0031  Score=37.92  Aligned_cols=34  Identities=35%  Similarity=0.807  Sum_probs=27.6

Q ss_pred             CCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCC
Q psy950          181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASD  223 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d  223 (407)
                      .+||..   ..|++.|.+...      ++|+|.|..||.-.+|
T Consensus         4 vDPCf~---~~CE~qCqP~~~------~~Y~CiCaeGFaP~p~   37 (43)
T d1dx5i1           4 VDPCFR---ANCEYQCQPLDQ------TSYLCVCAEGFAPIPH   37 (43)
T ss_dssp             CCGGGG---CCCSSEEEECSS------SCEEEECCTTEEEETT
T ss_pred             cccccC---CCcceeeeeCCC------CcceEEeccccccCCC
Confidence            579986   689999999866      3899999999974443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.71  E-value=0.14  Score=47.84  Aligned_cols=142  Identities=8%  Similarity=-0.015  Sum_probs=90.6

Q ss_pred             cceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEEec--
Q psy950          240 TEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEFDY--  313 (407)
Q Consensus       240 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAvDw--  313 (407)
                      ..+.-+.+....   ++..+.....+.++.|.+.++++|.+.. . +.|...+++......    ..+..+.++++..  
T Consensus        42 g~v~v~D~~t~~---v~~~~~~g~~~~~v~fSpDG~~l~~~s~-d-g~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~  116 (432)
T d1qksa2          42 GQIALIDGSTYE---IKTVLDTGYAVHISRLSASGRYLFVIGR-D-GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME  116 (432)
T ss_dssp             TEEEEEETTTCC---EEEEEECSSCEEEEEECTTSCEEEEEET-T-SEEEEEETTSSSCCEEEEEECCSEEEEEEECCST
T ss_pred             CEEEEEECCCCc---EEEEEeCCCCeeEEEECCCCCEEEEEcC-C-CCEEEEEeeCCCceEEEEEecCCCCCCeEEeccc
Confidence            344444443322   2233444456889999999999998764 4 678888887544221    3333677887753  


Q ss_pred             --cCCeEEEEeCCCCCeEEEEECCCCccc--------------ccCCCceeEEEEcCCCCeEEEEeCCCCCcccccCCCC
Q psy950          314 --ADDKILFTQIRPWAKIAWIPTTNPSSA--------------SSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTN  377 (407)
Q Consensus       314 --i~~~LYwtd~~~~~~I~v~~~~~~~rl--------------~~~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg~~  377 (407)
                        .++.||.+.... ++|.+.+......+              ...-.++.+|+..|...++|++... ...|.-+|..+
T Consensus       117 SpDG~~l~vs~~~~-~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~-~~~i~~~d~~~  194 (432)
T d1qksa2         117 GWEDKYAIAGAYWP-PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE-TGKILLVDYTD  194 (432)
T ss_dssp             TCTTTEEEEEEEET-TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-TTEEEEEETTC
T ss_pred             CCCCCEEEEEcCCC-CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc-CCeEEEEEccC
Confidence              578899999988 89999998765421              1123466688889888888888654 34454445555


Q ss_pred             CCCcceeEEEe
Q psy950          378 PSSASVNTILS  388 (407)
Q Consensus       378 ~~~~~~~~l~~  388 (407)
                      .....+..|..
T Consensus       195 ~~~~~~~~i~~  205 (432)
T d1qksa2         195 LNNLKTTEISA  205 (432)
T ss_dssp             SSEEEEEEEEC
T ss_pred             CCcceEEEEcc
Confidence            54444444443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.31  E-value=0.24  Score=45.17  Aligned_cols=116  Identities=14%  Similarity=0.043  Sum_probs=75.1

Q ss_pred             CCCCcceEEE--eCCCCEEEEEEcCCCCeEEEEeC--CCCC--eEEEEeC--CCCCceeEEEeCCCCeEEEEeCCCCeEE
Q psy950           31 FRSANTTSPF--SPLPRLLYWIDYGQYPRIGKSYL--DGSK--WTSIVSN--GISMPRDLTIDMQTHDVYWVDAKLDLIQ  102 (407)
Q Consensus        31 ~~~~P~~iav--dp~~g~lywtd~~~~~~I~r~~~--dG~~--~~~l~~~--~~~~P~glaiD~~~~~lYw~d~~~~~I~  102 (407)
                      .+..|.|||+  ++..|.+|..-.+..+.++...+  ++..  ...++..  .-..++|+++|..+++||.++... .|+
T Consensus       126 ~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~-Giw  204 (353)
T d1h6la_         126 AIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDE-AIW  204 (353)
T ss_dssp             SSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTT-EEE
T ss_pred             ccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCcc-ceE
Confidence            3557899999  88888655443333346654444  4433  2233321  234789999999999999999854 688


Q ss_pred             EEecCC---CeEEEEc-----cCCCCceEEEEeC-----CEEEEEeCCCCeEEEEecC
Q psy950          103 KISYNG---GNRQIIR-----RNLPNPMGIAVHK-----SDVYWVDRNLRTVYKASKL  147 (407)
Q Consensus       103 ~~~~dG---~~~~~~~-----~~~~~P~~lav~~-----~~lYwtd~~~~~I~~~~~~  147 (407)
                      +.+++-   .....+.     .-...|-|||++.     ++|..++...++....+..
T Consensus       205 ~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~  262 (353)
T d1h6la_         205 KFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQ  262 (353)
T ss_dssp             EEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecC
Confidence            888762   2333332     1256899999874     4788888777765555544

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.18  E-value=0.0026  Score=39.02  Aligned_cols=26  Identities=19%  Similarity=0.686  Sum_probs=21.8

Q ss_pred             ccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          194 QLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       194 ~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      ..|.+.++       +|+|.|+.||.  .||.+|.
T Consensus        13 A~C~Nt~G-------sy~C~C~~Gy~--GdG~~C~   38 (40)
T d1gl4a2          13 AECRDYAT-------GFCCRCVANYT--GNGRQCV   38 (40)
T ss_dssp             EEEEECSS-------CEEEEECTTEE--ECSSSEE
T ss_pred             CEeecCCC-------CeEeECCCCCc--CCCCEee
Confidence            36888877       59999999997  6788886

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.03  E-value=0.97  Score=39.24  Aligned_cols=87  Identities=6%  Similarity=-0.010  Sum_probs=60.0

Q ss_pred             EEEEEcCCCEEEEEEecC--------CceEEEEeCCCCcccc--cCCCCccEEEEeccCCe-EEEEeCCCCCeEEEEECC
Q psy950          267 GVEFDYADDKILFTQIRP--------WAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDK-ILFTQIRPWAKIAWIPTT  335 (407)
Q Consensus       267 ald~d~~~~~lywsd~~~--------~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~-LYwtd~~~~~~I~v~~~~  335 (407)
                      .+++.+.+..+|+.....        ...|..++..+.....  ..+..|.++|+.+.++. ||.+.... ++|.+.+..
T Consensus       253 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d-~~i~v~D~~  331 (355)
T d2bbkh_         253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD-KTLYIHDAE  331 (355)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT-TEEEEEETT
T ss_pred             EEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCC-CEEEEEECC
Confidence            367788899999886543        1357777777654433  33447899999998875 56666767 899999987


Q ss_pred             CCcc--cccCC-CceeEEEEcC
Q psy950          336 NPSS--ASSNL-TNVVGVEFDY  354 (407)
Q Consensus       336 ~~~r--l~~~l-~~P~~iavdp  354 (407)
                      ....  .+.+. ..|..|++..
T Consensus       332 tg~~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         332 SGEELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             TCCEEEEECCCCSSCCEEECCC
T ss_pred             CCCEEEEEeCcCCCccEEEeCC
Confidence            6653  23344 6788887654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=94.88  E-value=0.039  Score=48.40  Aligned_cols=92  Identities=7%  Similarity=-0.022  Sum_probs=64.2

Q ss_pred             EEcCCCEEEEEEecCCceEEEEeCCCCcccc--cC--CCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCccc-----
Q psy950          270 FDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SN--LTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA-----  340 (407)
Q Consensus       270 ~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~--~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~rl-----  340 (407)
                      +...+++++.... . +.|+.+++.....+.  .+  +..|.+|++.+.++.||.++... +.|.+.++.....+     
T Consensus         4 ~~~~~~~l~~~~~-~-~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~-~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           4 LKAGHEYMIVTNY-P-NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY-GDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCTTCEEEEEEET-T-TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEEES
T ss_pred             CCCCCcEEEEEcC-C-CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCC-CcEEEEeCccCeeeeeecc
Confidence            3444444444333 3 467777777654432  12  23789999999999999999888 89999998876431     


Q ss_pred             c----cCCCceeEEEEcCCCCeEEEEeC
Q psy950          341 S----SNLTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       341 ~----~~l~~P~~iavdp~~g~lywtd~  364 (407)
                      .    .....|.++++.|-..+||.+..
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEec
Confidence            1    12257899999999999998863

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.73  E-value=1.5  Score=39.88  Aligned_cols=113  Identities=13%  Similarity=-0.034  Sum_probs=74.9

Q ss_pred             CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEe-CCCCCceeEEEeC----CCCeEEEEeCCCCeEEEEecC
Q psy950           33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVS-NGISMPRDLTIDM----QTHDVYWVDAKLDLIQKISYN  107 (407)
Q Consensus        33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~-~~~~~P~glaiD~----~~~~lYw~d~~~~~I~~~~~d  107 (407)
                      ..|.+|++.|..++||-+..+  ..|...+++......+.. .....|.++++..    .+++||.+....+.+...+..
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d--~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~  139 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRD--ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  139 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETT--SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             CCeeEEEECCCCCEEEEEeCC--CCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCC
Confidence            469999999999999888654  388999998665443332 1234688888875    578899999888899988887


Q ss_pred             CCeEE-EEcc-----------CCCCceEEEEeC--CEEEEEeCCCCeEEEEecC
Q psy950          108 GGNRQ-IIRR-----------NLPNPMGIAVHK--SDVYWVDRNLRTVYKASKL  147 (407)
Q Consensus       108 G~~~~-~~~~-----------~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~  147 (407)
                      ..... .+..           ....+..++...  ..++|+....+.+..+...
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~  193 (426)
T d1hzua2         140 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK  193 (426)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS
T ss_pred             ccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEec
Confidence            65543 2221           112223344322  5677777766666555544

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.014  Score=35.39  Aligned_cols=23  Identities=30%  Similarity=0.600  Sum_probs=17.1

Q ss_pred             cceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          195 LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       195 lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      .|+....       +|+|.|+.||.    |+.|.
T Consensus        16 ~C~~~~~-------~y~C~C~~g~~----G~~Ce   38 (39)
T d1edmb_          16 SCKDDIN-------SYECWCPFGFE----GKNCE   38 (39)
T ss_dssp             EEEEETT-------EEEEECCTTCC----STTSC
T ss_pred             EEEcCCC-------CEEEECCCCCC----CCCCC
Confidence            3665544       69999999997    77663

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.0084  Score=38.19  Aligned_cols=17  Identities=29%  Similarity=0.888  Sum_probs=14.7

Q ss_pred             ceEEecCCCccccCCCCcccc
Q psy950          209 HYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       209 ~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      +|+|.|+.||.    |+.|..
T Consensus        27 ~y~C~C~~G~~----G~~Ce~   43 (48)
T d1autl1          27 SFSCDCRSGWE----GRFCQR   43 (48)
T ss_dssp             CCCEEECTTEE----STTSCE
T ss_pred             CCeEeCCCCCc----CCCccc
Confidence            69999999997    888863

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.016  Score=35.14  Aligned_cols=16  Identities=25%  Similarity=0.802  Sum_probs=13.8

Q ss_pred             ceEEecCCCccccCCCCccc
Q psy950          209 HYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       209 ~~~C~C~~G~~l~~d~~~C~  228 (407)
                      +|+|.|+.||.    |+.|.
T Consensus        21 ~y~C~C~~G~~----G~~Ce   36 (39)
T d2vj3a2          21 EFQCICMPGYE----GVHCE   36 (39)
T ss_dssp             CEEEECCTTEE----SSSSC
T ss_pred             CEEEeCCCCCc----cCcCe
Confidence            69999999997    77774

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=94.29  E-value=0.046  Score=51.74  Aligned_cols=95  Identities=13%  Similarity=0.052  Sum_probs=69.0

Q ss_pred             EcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEEeccCCeEEEEeCCCCCeE-----------------
Q psy950          271 DYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEFDYADDKILFTQIRPWAKI-----------------  329 (407)
Q Consensus       271 d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I-----------------  329 (407)
                      .+.+++||.+|... ++|.+++++......    ..+..|.|+++...++.+|.++... ..+                 
T Consensus        80 tpDGr~lfV~d~~~-~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~-~~v~~~~dg~~~~~~~~~~~  157 (441)
T d1qnia2          80 RYDGKYLFINDKAN-TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAE-FVIPQPNDGTDFSLDNSYTM  157 (441)
T ss_dssp             EEEEEEEEEEETTT-TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEEC-SCEESSCSSSCCCGGGEEEE
T ss_pred             cCCCCEEEEEcCCC-CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccC-CcccccCcccccccccccce
Confidence            34489999999998 999999998764322    2344899999999999999987665 444                 


Q ss_pred             -EEEECCCCcccc--cCCCceeEEEEcCCCCeEEEEeCCCC
Q psy950          330 -AWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIRPW  367 (407)
Q Consensus       330 -~v~~~~~~~rl~--~~l~~P~~iavdp~~g~lywtd~~~~  367 (407)
                       .+++......+.  .--.+|.+++++|..+++|++...+.
T Consensus       158 ~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse  198 (441)
T d1qnia2         158 FTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSE  198 (441)
T ss_dssp             EEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTT
T ss_pred             EEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCC
Confidence             334433332211  11257999999999999999998653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=94.28  E-value=0.13  Score=48.41  Aligned_cols=109  Identities=13%  Similarity=-0.071  Sum_probs=72.4

Q ss_pred             CCCcceEEE--eCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeC-CCCCceeEEEeCCCCeEEEEeCCCCeE-------
Q psy950           32 RSANTTSPF--SPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSN-GISMPRDLTIDMQTHDVYWVDAKLDLI-------  101 (407)
Q Consensus        32 ~~~P~~iav--dp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~-~~~~P~glaiD~~~~~lYw~d~~~~~I-------  101 (407)
                      ..+|.....  .|..++||.+|.... +|.+.+++--....++.. ....|+|+++.+.++++|++....+.+       
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~-rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANT-RVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTT-EEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCC-EEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            345654443  466889999999875 999999986555555543 356899999999999999987655544       


Q ss_pred             -----------EEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCCCeE
Q psy950          102 -----------QKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRTV  141 (407)
Q Consensus       102 -----------~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I  141 (407)
                                 ..++.......-.......|.++++..  .++|++...++.+
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~  200 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERA  200 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCC
T ss_pred             ccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCce
Confidence                       234443333211111234677787754  7899987766543

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.023  Score=33.50  Aligned_cols=30  Identities=33%  Similarity=0.981  Sum_probs=21.0

Q ss_pred             CCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcc
Q psy950          181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC  227 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C  227 (407)
                      .+||..  +|.    |+....       +|+|.|+.||.    |+.|
T Consensus         5 ~~PC~n--gg~----C~~~~~-------~y~C~C~~g~~----G~~C   34 (35)
T d2vj3a3           5 SSPCLH--NGR----CLDKIN-------EFQCECPTGFT----GHLC   34 (35)
T ss_dssp             TCCSTT--TCE----EEECSS-------CEEEECCTTEE----SSSS
T ss_pred             CCCCCC--CcE----EECCCC-------CeEEECCCCCC----CCCc
Confidence            578863  444    565443       69999999997    6666

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.42  E-value=0.021  Score=34.94  Aligned_cols=18  Identities=50%  Similarity=1.038  Sum_probs=14.3

Q ss_pred             ceEEecCC-CccccCCCCccccc
Q psy950          209 HYKCDCAT-GTPSASDPKKCTTM  230 (407)
Q Consensus       209 ~~~C~C~~-G~~l~~d~~~C~~~  230 (407)
                      +|+|.|+. ||.    |..|..|
T Consensus        22 ~y~C~C~~~gy~----G~~Ce~p   40 (41)
T d1cvua2          22 QYKCDCTRTGFY----GENCTTP   40 (41)
T ss_dssp             EEEEECTTSSEE----TTTTCEE
T ss_pred             CEEEeCcCCCcC----CcCcCcC
Confidence            69999984 887    8888643

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.29  E-value=0.024  Score=33.88  Aligned_cols=30  Identities=27%  Similarity=0.703  Sum_probs=20.5

Q ss_pred             CCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcc
Q psy950          181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC  227 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C  227 (407)
                      .+||..  +|.    |+....       +|.|.|+.||.    |..|
T Consensus         7 ~~PC~n--gg~----C~~~~~-------~y~C~C~~g~~----G~~C   36 (37)
T d2c4fl1           7 SSPCQN--GGS----CKDQLQ-------SYICFCLPAFE----GRNC   36 (37)
T ss_dssp             GCCCCT--TCE----EEEETT-------EEEEECCTTEE----STTS
T ss_pred             CCCCCC--CCE----EECCCC-------CeEEECCCCCc----CCCC
Confidence            467753  344    555443       79999999997    6666

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=0.032  Score=33.66  Aligned_cols=31  Identities=32%  Similarity=0.765  Sum_probs=21.9

Q ss_pred             CCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      .+||..  +|.|    +....       +|.|.|+.||.    |..|.
T Consensus         5 ~~PC~n--gg~C----~~~~~-------~y~C~C~~G~~----G~~Ce   35 (39)
T d1xkba1           5 TSPCQN--QGKC----KDGLG-------EYTCTCLEGFE----GKNCE   35 (39)
T ss_dssp             TCCCCS--SCEE----CCCSS-------SCCEECCTTEE----TTTTC
T ss_pred             CCCCCC--CcEE----ECCCC-------CEEEECCCCCC----cCcCe
Confidence            578863  4555    43333       69999999997    77785

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.23  E-value=0.063  Score=32.69  Aligned_cols=33  Identities=27%  Similarity=0.677  Sum_probs=22.9

Q ss_pred             CCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      .|||..  .|.    |++....     .+|+|.||.||.    |..|.
T Consensus         3 ~nPC~n--gG~----C~~~~~~-----~~y~C~C~~g~~----G~~Ce   35 (41)
T d1tpga1           3 EPRCFN--GGT----CQQALYF-----SDFVCQCPEGFA----GKSCE   35 (41)
T ss_dssp             SCCSCT--TCE----EEEESSS-----SCEEEECCTTCB----SSSCC
T ss_pred             CCCCCC--CCE----EecCCCC-----CCeEECCCCCCC----CCCcC
Confidence            578963  445    4444332     379999999997    88886

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=92.14  E-value=0.037  Score=33.98  Aligned_cols=18  Identities=39%  Similarity=0.975  Sum_probs=14.3

Q ss_pred             ceEEecCC-CccccCCCCccccc
Q psy950          209 HYKCDCAT-GTPSASDPKKCTTM  230 (407)
Q Consensus       209 ~~~C~C~~-G~~l~~d~~~C~~~  230 (407)
                      +|+|.|+. ||.    |..|..+
T Consensus        23 ~y~C~C~~~G~~----G~~Ce~p   41 (42)
T d1q4ga2          23 RYQCDCTRTGYS----GPNCTIP   41 (42)
T ss_dssp             EEEEECTTSSEE----TTTTCEE
T ss_pred             CEEEECCCCCcC----CcCcCcC
Confidence            79999985 887    8888643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.12  E-value=2.2  Score=36.53  Aligned_cols=124  Identities=10%  Similarity=-0.003  Sum_probs=84.4

Q ss_pred             eeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc---cCCCCccEEE
Q psy950          234 LVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS---SNLTNVVGVE  310 (407)
Q Consensus       234 Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~---~~~~~~~glA  310 (407)
                      +.++.+..|.-..+....    ...+.....+.++.|.+.+++|+++.......|+..++.+.....   ..+ .+..++
T Consensus        18 ~a~~~~g~v~v~d~~~~~----~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~-~v~~~~   92 (360)
T d1k32a3          18 IAFVSRGQAFIQDVSGTY----VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLG-NVFAMG   92 (360)
T ss_dssp             EEEEETTEEEEECTTSSB----EEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCC-SEEEEE
T ss_pred             EEEEECCeEEEEECCCCc----EEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCc-eEEeee
Confidence            455556666655554321    122334556889999999999988765541457778887765443   334 788999


Q ss_pred             EeccCCeEEEEeCCCCCeEEEEECCCCcc--ccc-CCCceeEEEEcCCCCeEEEEeC
Q psy950          311 FDYADDKILFTQIRPWAKIAWIPTTNPSS--ASS-NLTNVVGVEFDYADDKILFTQI  364 (407)
Q Consensus       311 vDwi~~~LYwtd~~~~~~I~v~~~~~~~r--l~~-~l~~P~~iavdp~~g~lywtd~  364 (407)
                      +.+.++.|.......  .+.+.++++...  +.. .......++..|...+|.|+..
T Consensus        93 ~spdg~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~  147 (360)
T d1k32a3          93 VDRNGKFAVVANDRF--EIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP  147 (360)
T ss_dssp             ECTTSSEEEEEETTS--EEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred             ecccccccceecccc--ccccccccccceeeeeecccccccchhhccceeeeeeecc
Confidence            999999888877765  788888877643  332 4456678999998888887753

>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.032  Score=31.62  Aligned_cols=30  Identities=20%  Similarity=0.445  Sum_probs=20.7

Q ss_pred             cccccccceecCCCCCCCCcceEEecCCCccccCCCCcc
Q psy950          189 NGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC  227 (407)
Q Consensus       189 ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C  227 (407)
                      ...|.-.|-+...        ..|.||.||.|+. +..|
T Consensus         5 qt~CPAdCdP~~p--------~~C~CPeGyIlde-g~~c   34 (35)
T d1dx5i2           5 QTACPADCDPNTQ--------ASCECPEGYILDD-GFIC   34 (35)
T ss_dssp             SSEEECEECTTST--------TCEECCTTEEEET-TTEE
T ss_pred             cccCCCccCCCCC--------CcccCCCceEecc-cccc
Confidence            3567777776543        4799999999764 4444

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.047  Score=36.75  Aligned_cols=35  Identities=31%  Similarity=0.748  Sum_probs=24.3

Q ss_pred             CCCccCCCcccccccc-eecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          181 NNPCFRTGNGGCEQLC-FSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC-~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      .|||.  |.|.|..+- +...       .+|.|.|+.||.    |..|.
T Consensus        11 ~~~C~--NgG~C~~~~~~~~~-------~~y~C~C~~gy~----G~~Ce   46 (63)
T d1haea_          11 KTFCV--NGGECFMVKDLSNP-------SRYLCKCQPGFT----GARCT   46 (63)
T ss_dssp             HTTSC--TTCEEEEEESSSSS-------CCEEEECCTTEE----STTSC
T ss_pred             CCcCC--CCCEEeecccccCC-------CCEEeECCCCCC----CCCcC
Confidence            57886  356775443 2222       369999999998    88886

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.95  E-value=0.066  Score=32.23  Aligned_cols=32  Identities=31%  Similarity=0.755  Sum_probs=22.3

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      ..+||..  +|.    |+...+       +|+|.|+.||.    |..|.
T Consensus         5 ~~~pC~n--gg~----C~~~~~-------~~~C~C~~g~~----G~~Ce   36 (39)
T d1g1ta2           5 TNTSCSG--HGE----CVETIN-------NYTCKCDPGFS----GLKCE   36 (39)
T ss_dssp             CTTGGGG--SEE----EEEETT-------EEEEEECTTEE----STTSC
T ss_pred             cCCcCCC--CcE----EECCCC-------CEEEeCCCCCc----CcCcC
Confidence            3577852  444    555544       69999999997    77775

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.25  E-value=0.13  Score=31.09  Aligned_cols=32  Identities=25%  Similarity=0.709  Sum_probs=22.5

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      ..|||..  +|.    |+...+       +|+|.|+.||.    |..|.
T Consensus         5 ~~~pC~n--gg~----C~~~~~-------~y~C~C~~g~~----G~~Ce   36 (40)
T d1g1sa2           5 QDMSCSK--QGE----CLETIG-------NYTCSCYPGFY----GPECE   36 (40)
T ss_dssp             CTTGGGG--SEE----EEECSS-------SEEEEECTTEE----STTSC
T ss_pred             cCCcCCC--CcE----EECCCC-------CeEEeCCCCcc----CCCCC
Confidence            3578852  444    555544       69999999997    77775

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=88.73  E-value=0.63  Score=43.24  Aligned_cols=93  Identities=9%  Similarity=-0.038  Sum_probs=66.2

Q ss_pred             CCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEEeccCCeEEEEeCCCC------------------CeEEE
Q psy950          274 DDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEFDYADDKILFTQIRPW------------------AKIAW  331 (407)
Q Consensus       274 ~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAvDwi~~~LYwtd~~~~------------------~~I~v  331 (407)
                      +++||..|... .+|.|++++.-....    .....+.|+.+....+..|....+..                  +.+.+
T Consensus        99 GrylFVNDkan-~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          99 GRFLFMNDKAN-TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEETTT-TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             eeEEEEEcCCC-ceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            89999999998 999999998765322    22338899999877788888764430                  22455


Q ss_pred             EECCCCcccc--cCCCceeEEEEcCCCCeEEEEeCCCC
Q psy950          332 IPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIRPW  367 (407)
Q Consensus       332 ~~~~~~~rl~--~~l~~P~~iavdp~~g~lywtd~~~~  367 (407)
                      ++.+......  .--.+|.+++++|..+++|+|...+.
T Consensus       178 ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE  215 (459)
T d1fwxa2         178 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSE  215 (459)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTT
T ss_pred             EecCCceEEEEeeeCCChhccccCCCCCEEEEEecccc
Confidence            6665443211  11147889999999999999987553

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.80  E-value=2.3  Score=39.27  Aligned_cols=107  Identities=13%  Similarity=0.047  Sum_probs=71.6

Q ss_pred             cCCCCCcceEEEeC---CCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeC-CCCCceeEEEeCCCCeEEEEeCCCC-----
Q psy950           29 TSFRSANTTSPFSP---LPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSN-GISMPRDLTIDMQTHDVYWVDAKLD-----   99 (407)
Q Consensus        29 ~~~~~~P~~iavdp---~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~-~~~~P~glaiD~~~~~lYw~d~~~~-----   99 (407)
                      ..++.+| .+..--   ..+|||.+|..+ ++|.|.+++--....++.. ....|+|+.+....+..|++.....     
T Consensus        82 ~GD~HHP-~~S~TdGtyDGrylFVNDkan-~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~p  159 (459)
T d1fwxa2          82 NGDLHHV-HMSFTEGKYDGRFLFMNDKAN-TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLV  159 (459)
T ss_dssp             CCCBCCE-EEEEETTEEEEEEEEEEETTT-TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESS
T ss_pred             CCCcCCC-cccccCCccceeEEEEEcCCC-ceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccC
Confidence            4566778 444332   368999999876 5999999998776666653 4668999999888888888764332     


Q ss_pred             --------------eEEEEecCCCeE--EEEccCCCCceEEEE--eCCEEEEEeCCCC
Q psy950          100 --------------LIQKISYNGGNR--QIIRRNLPNPMGIAV--HKSDVYWVDRNLR  139 (407)
Q Consensus       100 --------------~I~~~~~dG~~~--~~~~~~~~~P~~lav--~~~~lYwtd~~~~  139 (407)
                                    .+..++.+-...  ++...  ..|.++++  ++.++|+|...+.
T Consensus       160 ndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~--g~ld~~~~s~dGK~af~TsyNSE  215 (459)
T d1fwxa2         160 NDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSE  215 (459)
T ss_dssp             CSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTT
T ss_pred             CCCccccchhhcceEEEEEecCCceEEEEeeeC--CChhccccCCCCCEEEEEecccc
Confidence                          345566665444  23233  35555665  5589999876544

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.56  E-value=0.17  Score=31.76  Aligned_cols=16  Identities=31%  Similarity=1.024  Sum_probs=14.2

Q ss_pred             ceEEecCCCccccCCCCccc
Q psy950          209 HYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       209 ~~~C~C~~G~~l~~d~~~C~  228 (407)
                      +|+|.|+.||.    |..|.
T Consensus        26 ~~~C~C~~gy~----G~~Ce   41 (48)
T d1nqlb_          26 KYACNCVVGYI----GERCQ   41 (48)
T ss_dssp             EEEEEECTTEE----STTSC
T ss_pred             CeEEeCCCCcc----cCCCC
Confidence            69999999998    77885

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=86.98  E-value=7.1  Score=33.01  Aligned_cols=102  Identities=6%  Similarity=-0.079  Sum_probs=71.3

Q ss_pred             CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE
Q psy950           32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR  111 (407)
Q Consensus        32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~  111 (407)
                      -...++++..|..++|+++.......|...++++...+.+. .....+..++..+.++.|..+. ..+.+...++++...
T Consensus        42 ~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~-~~~~~v~~~~~spdg~~l~~~~-~~~~~~~~~~~~~~~  119 (360)
T d1k32a3          42 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETGKP  119 (360)
T ss_dssp             CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE
T ss_pred             CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee-CCCceEEeeeecccccccceec-cccccccccccccce
Confidence            44579999999988998876544336888888876655443 3455678999999888777765 456788888887766


Q ss_pred             EE-EccCCCCceEEEEeC--CEEEEEe
Q psy950          112 QI-IRRNLPNPMGIAVHK--SDVYWVD  135 (407)
Q Consensus       112 ~~-~~~~~~~P~~lav~~--~~lYwtd  135 (407)
                      .. +.........+++..  .+|.++.
T Consensus       120 ~~~~~~~~~~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3         120 TVIERSREAMITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             EEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred             eeeeecccccccchhhccceeeeeeec
Confidence            43 334444556777754  5666654

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.23  E-value=0.45  Score=30.42  Aligned_cols=34  Identities=24%  Similarity=0.676  Sum_probs=22.7

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      ..++|.  |+|.|    ......     ..|+|.|+.||.    |..|.
T Consensus        10 ~~~~C~--NgG~C----~~~~~~-----~~~~C~C~~gy~----G~~Ce   43 (53)
T d3egfa_          10 YDGYCL--NGGVC----MHIESL-----DSYTCNCVIGYS----GDRCQ   43 (53)
T ss_dssp             SSCCSC--SSCEE----EEESSS-----SCEEEECCTTCC----SSSSC
T ss_pred             CCCCCC--CCcEe----eccCCC-----CCeEeECCCCCc----CCCCc
Confidence            456775  34555    433332     369999999997    88886

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.00  E-value=0.43  Score=29.99  Aligned_cols=33  Identities=24%  Similarity=0.565  Sum_probs=22.7

Q ss_pred             CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc
Q psy950          180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT  228 (407)
Q Consensus       180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~  228 (407)
                      ..+.|.   ||+|-.   ....      ..+.|.|+.||.    |..|.
T Consensus        11 ~~~yCl---nGgcc~---~~~~------~~~~C~C~~gy~----G~RCe   43 (49)
T d1moxc_          11 HTQFCF---HGTCRF---LVQE------DKPACVCHSGYV----GARCE   43 (49)
T ss_dssp             SSCSST---TEEEEE---ETTT------TEEEEEECTTEE----STTSC
T ss_pred             cCCEee---CCeEEe---cCCC------CCcEeECCCCCE----ecCCc
Confidence            456774   577643   2222      379999999998    78885

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.59  E-value=0.45  Score=30.02  Aligned_cols=33  Identities=21%  Similarity=0.528  Sum_probs=22.5

Q ss_pred             CCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccc
Q psy950          181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT  229 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~  229 (407)
                      .+.|.   ||+|-.   ....      ..++|.|+.||.    |..|..
T Consensus        13 ~~yC~---nGgcc~---~~~~------~~~~C~C~~gy~----G~rCe~   45 (50)
T d1ioxa_          13 KHYCI---KGRCRF---VVAE------QTPSCVCDEGYI----GARCER   45 (50)
T ss_dssp             TTSCT---TCCEEE---ETTT------TEEEECCCTTEE----TTTTCE
T ss_pred             CCCcc---CCeEEE---eCCC------CCcEeECCCCCe----eCCCcc
Confidence            46674   477643   3333      369999999998    778863

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.28  E-value=1  Score=25.80  Aligned_cols=25  Identities=40%  Similarity=1.032  Sum_probs=17.7

Q ss_pred             CCCccCCCcccccccceecCCCCCCCCcceEEecCCCcc
Q psy950          181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTP  219 (407)
Q Consensus       181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~  219 (407)
                      -|||   .||.|+    +..+       ++.|.|..||.
T Consensus         7 gnpC---GnGTCt----NviG-------gFec~C~~GFe   31 (39)
T d1emoa2           7 GNPC---GNGTCK----NVIG-------GFECTCEEGFE   31 (39)
T ss_dssp             TCSS---SSSCEE----ECSS-------SEEECCSSSSC
T ss_pred             CCcc---CCceee----eccc-------ceEEeecCCcC
Confidence            3667   356654    4555       69999999997