Psyllid ID: psy9511
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1301 | ||||||
| 328723682 | 2678 | PREDICTED: hypothetical protein LOC10016 | 0.926 | 0.450 | 0.491 | 0.0 | |
| 189238710 | 3589 | PREDICTED: similar to AGAP009638-PA [Tri | 0.958 | 0.347 | 0.515 | 0.0 | |
| 332027423 | 4565 | hypothetical protein G5I_03899 [Acromyrm | 0.956 | 0.272 | 0.457 | 0.0 | |
| 170030352 | 3683 | conserved hypothetical protein [Culex qu | 0.949 | 0.335 | 0.465 | 0.0 | |
| 158298502 | 3551 | AGAP009638-PA [Anopheles gambiae str. PE | 0.950 | 0.348 | 0.466 | 0.0 | |
| 322796140 | 1875 | hypothetical protein SINV_04687 [Solenop | 0.964 | 0.669 | 0.452 | 0.0 | |
| 242015512 | 3297 | conserved hypothetical protein [Pediculu | 0.953 | 0.376 | 0.490 | 0.0 | |
| 328789723 | 4040 | PREDICTED: hypothetical protein LOC40867 | 0.962 | 0.309 | 0.448 | 0.0 | |
| 350415652 | 4859 | PREDICTED: hypothetical protein LOC10074 | 0.946 | 0.253 | 0.412 | 0.0 | |
| 380026573 | 2391 | PREDICTED: uncharacterized protein LOC10 | 0.964 | 0.524 | 0.437 | 0.0 |
| >gi|328723682|ref|XP_003247917.1| PREDICTED: hypothetical protein LOC100160459 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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Score = 1040 bits (2690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/1462 (49%), Positives = 855/1462 (58%), Gaps = 256/1462 (17%)
Query: 5 DQLHLEGDYS--PQRKDEYPAVKGDRAPVKKPEDNLKPEGAFERPVPEKYGPGERAPIVK 62
D + +EG + K+++ ++ +R KKP DNLKPEG F+RP EKY P ER +K
Sbjct: 61 DNITIEGKFDDRTHSKEQFKNIQAERPIQKKPIDNLKPEGEFDRPQKEKYKPSERPKQIK 120
Query: 63 HPDNLKPEGGFERPQPEGFTPAERPKLVKPKDNLKPEGDFERPLVEKYGPGERAPIVKHA 122
DNLKPEG FERP+ + + ERPK +KP+DNLK EG+FERP+ EKY P ER K +
Sbjct: 121 PTDNLKPEGNFERPKQKDYKTGERPKQIKPQDNLKSEGEFERPIEEKYEPSERPSPFKPS 180
Query: 123 DNLRPEGDFDRPQAGKFIPAERPKAVKPQDNLKPEGEFERPIPEKYGPGERAPIVKHPDN 182
DNL+PEGDFDRP+ K+ P ERP KP DNLKPEGEFE+ P+K GPG+RAPIVK DN
Sbjct: 181 DNLKPEGDFDRPKNEKYKPGERPTPFKPSDNLKPEGEFEKRTPQKVGPGDRAPIVKPKDN 240
Query: 183 LKPEGDFERPLHEKYSPAERPKSVKPKDNLKPEGDFERPEVGKYSPAERPKAVKPQDNLK 242
L PEG+F+RP +++ P+ERPK VKP+DNL PEG FERPE+ +YSP+ERPK KP DNLK
Sbjct: 241 LYPEGEFQRPKPDEFQPSERPKQVKPQDNLFPEGSFERPELPEYSPSERPKQFKPTDNLK 300
Query: 243 PEGEFERPS-QPLVPLKGERAEIKRYEDHKITGGEFTGITTQQVEFTGELTERPPLIRRN 301
PEG+FERP + P ER + D+ GEF T Q+V +R P+++
Sbjct: 301 PEGDFERPVYEKFRP--SERPAAFKPSDNLKPEGEFEKRTPQKV----GPGDRAPIVKPK 354
Query: 302 TWTKLEGEFTSETTSQTEFKRFDSTQRTEIVKRRSDNLTVLPRNKDDHPEKWKVKP-EKP 360
EGEF + + D + +E K+ + P D PE + P E+P
Sbjct: 355 DNLYPEGEF--------QRPKPDDYRPSEKPKQVKPQDNLFPEGSFDRPELPEYSPSERP 406
Query: 361 KKHQ--DNLRPDGGKFSSETSSSETFQAHQIIKKEEIRRREDNLVQEGEMIFVTSAHEEF 418
K+ + DNL+P+G E E F+ + + + DNL EG EF
Sbjct: 407 KQFKPTDNLKPEG---DFERPVYEKFRPSE---RPAAFKPSDNLKPEG----------EF 450
Query: 419 TEKTPERVKPQRRRTWTKQDGEIYFQTTSATEFTEHSTTDLRQAQVRHVDNLKTGGTFEG 478
++TP++V P R V+ DNL G F+
Sbjct: 451 EKRTPQKVGPGDRAPI-----------------------------VKPKDNLYPEGEFQR 481
Query: 479 KPKDDYMPVTAERPKQQKPKDNLRPEGDFERPTKVTPEKGERPKAIKPKDNLKPEGEFER 538
DDY P +ERPKQ KP+DNL PEG F+RP ERPK KP DNLKPEG+FER
Sbjct: 482 PKPDDYQP--SERPKQVKPQDNLFPEGSFDRPELPEYSPSERPKQFKPTDNLKPEGDFER 539
Query: 539 PVKEPLGPADRAPIIKHPDNLKLEGDFEDKPRPKAPERGERAPIRKPKDNLYPEGDFERP 598
PV E P++R K DNLK EG+FE K P+ G+RAPI KPKDNL+PEG+FERP
Sbjct: 540 PVYEKFQPSERPAAFKPSDNLKPEGEFE-KRTPQKVGPGDRAPIVKPKDNLFPEGNFERP 598
Query: 599 EHQEYKKGERPTAYKPHDNLKPEGEFERPIKEKPKQAERVEPFKVRDNLKTEGEFEGRPK 658
E+ EY ERP +KP DNLKPEG+F+RP+ EK + +ER +K DNLK EGEFE R
Sbjct: 599 EYPEYSPSERPKQFKPTDNLKPEGDFDRPVHEKFRPSERPAAYKPSDNLKPEGEFERRKP 658
Query: 659 DDYGPKVGDRAPVKKPQDNLYPEGEFERPEYPEFQKAERPKAFKPHDNLKPEGDFERPVK 718
D++ P DR KPQDNLYPEG FERPEYPE+ +ERPK FKP DNLKPEGDFERPV
Sbjct: 659 DEFQP--ADRVKQVKPQDNLYPEGNFERPEYPEYSPSERPKQFKPTDNLKPEGDFERPVY 716
Query: 719 EKPKQGERVEPIKVRDNLKPEGEFEGRPKDDYGPKIGDRAPVKKPQDNLYPEGE------ 772
EK + ER K DNLKPEGEFE R GP GDRAP+ KP+DNLYPEGE
Sbjct: 717 EKFQPSERPAAFKPSDNLKPEGEFEKRTPQKVGP--GDRAPIVKPKDNLYPEGEFQRPKP 774
Query: 773 -----------------------FERPEYPEFQKAERPKAFKPHDNLKPEGDFERPVKEK 809
FERPEYPE+ +ERPK FKP DNLKPEGDFERPV EK
Sbjct: 775 DDYRPSERPKQVKPQDNLFPEGSFERPEYPEYSPSERPKQFKPTDNLKPEGDFERPVYEK 834
Query: 810 PKQAERVEAFKMKDNLKPEGDFEGRPKDDYGPKVGDRAPVKKPQDNLYPEGEFE------ 863
+ +ER FK DNLKPEG+FE R G GDRAP+ KP+DNLYPEGEF+
Sbjct: 835 FQASERPIPFKPTDNLKPEGEFEKRLPQKVG--QGDRAPIVKPKDNLYPEGEFQRPKPDD 892
Query: 864 -----------------------RPEYPEFQKGERPKAFKPHDNLKPEGDFERPVKEKPK 900
RP+YPE+ ERPK FKP DNLKPEGDFERPV EK
Sbjct: 893 YQPSERPKQVKPQDNLFPEGSFDRPDYPEYTASERPKQFKPIDNLKPEGDFERPVHEKFT 952
Query: 901 QAEKVEAFKMKDNLKPEGDFEGRPKDDYGPKVGDRAPV---------------------- 938
+E+ AFK DNLKPEG+FE R G GDRAP+
Sbjct: 953 PSERPAAFKPSDNLKPEGEFEKRTPQKVG--TGDRAPIVKPKDNLYPEGEFQRPKPDYYQ 1010
Query: 939 -------KKPQDNLYPEGEFERPEYQEFQKAERPKAFKPHDNLKPEGDFERPIKEKPKQA 991
KPQDNL+PEGEF+RPE+ E+ +ERPK FKP DNLKPEGDFERP+ E K +
Sbjct: 1011 PSERPKQVKPQDNLFPEGEFQRPEHPEYSPSERPKQFKPTDNLKPEGDFERPVYEMFKPS 1070
Query: 992 ERVEPFKLRDNLKPEGEFEGRPKDDYGPKVGDRAPVKKPQDNLYPEGE------------ 1039
ER PFK DNLKPEGEFE R GP GDRAP+ KP+DNLYPEGE
Sbjct: 1071 ERPTPFKPSDNLKPEGEFEKRTPQKVGP--GDRAPIVKPKDNLYPEGEFQRPKPNEFQPS 1128
Query: 1040 -----------------FERPEYPEFQKAERPKAFKPHDNLKPEGDFERPVKEKPKQAER 1082
FERPE+PE+ +ERPK FKP DNLKPEGDF+RPV EK K +ER
Sbjct: 1129 ERPKQIKPQDNLFPEGSFERPEHPEYSPSERPKQFKPSDNLKPEGDFDRPVYEKFKPSER 1188
Query: 1083 VEAFKMKDNLKPEGDFEGRPKDDYGPKVGDRAPVKKPQDNLYPEGE-------------- 1128
AFK DNLK EG+FE R GP GDRAP+ KP+DNLYPEGE
Sbjct: 1189 PAAFKPTDNLKTEGEFEKRTPQKVGP--GDRAPIVKPKDNLYPEGEFQRPKPNEFQPSER 1246
Query: 1129 ---------------FERPEYPEFQKAERPMAFKPHDNLKPEGDFERPVKEKPKQAERVE 1173
FERPE+PE+ +ERP FKP DNLKPEGDF+RPV EK K +ER
Sbjct: 1247 PKQIKPQDNLFPEGSFERPEHPEYSPSERPKQFKPSDNLKPEGDFDRPVYEKFKPSERPA 1306
Query: 1174 PFKVKDNLKPEGEFEGRPKDDYGPKVGDRAPVKKPQDNLYPEGE---------------- 1217
FK DNLK EGEFE R GP GDRAP+ KP+DNLYPEGE
Sbjct: 1307 AFKPTDNLKTEGEFEKRTPQKVGP--GDRAPIVKPKDNLYPEGEFQRPKPNEFQPSERPK 1364
Query: 1218 -------------FERPEYPEFQKAERPKAFKPHDNLKPEGDFDRPVKEKPKQAERVEPF 1264
FERPE+PE+ +ERPK FKP DNLKPEGDFDRPV EK + +ER PF
Sbjct: 1365 QIKPQDNLFPEGNFERPEHPEYSPSERPKQFKPSDNLKPEGDFDRPVHEKFRPSERPAPF 1424
Query: 1265 KVKDNLKPEGDFEGRPKDDYGP 1286
K DNLKPEG+FE R GP
Sbjct: 1425 KPSDNLKPEGEFEKRTPQKVGP 1446
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Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189238710|ref|XP_969341.2| PREDICTED: similar to AGAP009638-PA [Tribolium castaneum] gi|270010078|gb|EFA06526.1| hypothetical protein TcasGA2_TC009430 [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|332027423|gb|EGI67506.1| hypothetical protein G5I_03899 [Acromyrmex echinatior] | Back alignment and taxonomy information |
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| >gi|170030352|ref|XP_001843053.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167866945|gb|EDS30328.1| conserved hypothetical protein [Culex quinquefasciatus] | Back alignment and taxonomy information |
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| >gi|158298502|ref|XP_318671.4| AGAP009638-PA [Anopheles gambiae str. PEST] gi|157013913|gb|EAA13867.5| AGAP009638-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
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| >gi|322796140|gb|EFZ18716.1| hypothetical protein SINV_04687 [Solenopsis invicta] | Back alignment and taxonomy information |
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| >gi|242015512|ref|XP_002428397.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513009|gb|EEB15659.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|328789723|ref|XP_392215.4| PREDICTED: hypothetical protein LOC408677 [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|350415652|ref|XP_003490707.1| PREDICTED: hypothetical protein LOC100747732 [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|380026573|ref|XP_003697023.1| PREDICTED: uncharacterized protein LOC100872072 [Apis florea] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1301 | ||||||
| WB|WBGene00006436 | 18 | ttn-1 [Caenorhabditis elegans | 0.934 | 67.55 | 0.240 | 8.8e-33 | |
| FB|FBgn0052602 | 3269 | Muc12Ea "Mucin 12Ea" [Drosophi | 0.571 | 0.227 | 0.277 | 3e-27 | |
| UNIPROTKB|J9P515 | 1135 | NEFH "Uncharacterized protein" | 0.481 | 0.552 | 0.255 | 8.7e-27 | |
| UNIPROTKB|F1PNP2 | 1143 | NEFH "Uncharacterized protein" | 0.485 | 0.552 | 0.254 | 2.4e-26 | |
| MGI|MGI:98864 | 35 | Ttn "titin" [Mus musculus (tax | 0.587 | 21.82 | 0.263 | 5.4e-25 | |
| UNIPROTKB|F1PZZ3 | 1061 | NEFH "Uncharacterized protein" | 0.445 | 0.546 | 0.258 | 1.8e-24 | |
| UNIPROTKB|F1N757 | 34 | F1N757 "Uncharacterized protei | 0.631 | 24.17 | 0.249 | 2.7e-24 | |
| UNIPROTKB|F1MSQ6 | 1082 | NEFH "Uncharacterized protein" | 0.499 | 0.600 | 0.239 | 3.9e-24 | |
| UNIPROTKB|Q8WZ42 | 34 | TTN "Titin" [Homo sapiens (tax | 0.585 | 22.41 | 0.251 | 6.4e-23 | |
| UNIPROTKB|J9P010 | 1017 | NEFH "Uncharacterized protein" | 0.398 | 0.509 | 0.267 | 2.2e-21 |
| WB|WBGene00006436 ttn-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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Score = 426 (155.0 bits), Expect = 8.8e-33, Sum P(3) = 8.8e-33
Identities = 328/1361 (24%), Positives = 567/1361 (41%)
Query: 4 EDQLHLEGDYSPQRKDEYPAVKGDRAPVKKP-EDNLKPEGA--FERPVPEKYGPGERAPI 60
+D+L E D +++++ + A +KK +D LK E A ++ +K A +
Sbjct: 7026 DDKLKQEADAKLKKENDDKLKQEADAKLKKENDDKLKQEAAAKLKKENDDKLKQEADAKL 7085
Query: 61 VK-HPDNLKPEGG--FERPQPEGFTPAERPKLVKPKDN-LKPEGDFERPLVEKYGPGERA 116
K + D LK E ++ + KL K D+ LK E D + ++K +
Sbjct: 7086 KKENDDKLKQEADAKLQKENDDKLKQEADAKLQKENDDKLKQEADAK---LQKENDDK-- 7140
Query: 117 PIVKHAD-NLRPEGDFD-RPQAGKFIPAERPKAVKPQDNLKPEGEFERPIPEKYGPGERA 174
+ + AD L+ E D + +A + E +K + + K + E + + ++ +
Sbjct: 7141 -LKQEADAKLQKENDDKLKQEADAKLQKENDDKLKQEADAKLKKENDDKLKQE--ADAKL 7197
Query: 175 PIVKHPDNLKPEGD--FERPLHEKYSPAERPKSVKPKDN-LKPEGD--FERPEVGKYSPA 229
KH D LK E D ++ +K K K D+ LK E D ++ + K
Sbjct: 7198 KKEKH-DKLKQEADAKLQKENDDKLKQEADAKLQKENDDKLKQEADAKLQKEKDDKLKQE 7256
Query: 230 ERPKAVKPQDN-LKPEGEFERPSQPLVPLKGER-AEIKRYEDHKITGGEFTGITTQQ--- 284
K K +D+ LK + + + + LK E A++K+ +D K+ + ++
Sbjct: 7257 ADAKLKKEKDDKLKQDADAKLQKEKDDKLKQEADAKLKKEKDDKLKHEADAKLQKEKDDK 7316
Query: 285 --VEFTGELT-ERPPLIRRNTWTKLXXXXXXXXXXXXXXKRFDSTQRTEIVKRRSDNLTV 341
E +L E+ ++++ KL K ++ + +K +D
Sbjct: 7317 LKQEADAKLKKEKDDRLKKDADAKLQKEKDDKLKQEADAKL--KKEKDDKLKHEAD--AK 7372
Query: 342 LPRNKDDHXXXXXXXXXXXXXHQDNLRPDG-GKXXXXXXXXXXXQAHQIIKKEEIRRRED 400
L + KDD D L+ + K +A +KKE ++D
Sbjct: 7373 LQKEKDDKLKQEADAKLKKEK-DDKLKQEADAKLQKEKDDKLKQEADAKLKKE----KDD 7427
Query: 401 NLVQEGEMIFVTSAHEEFTEKTPERVKPQRRRTWTKQDGEIYFQTTSATEFTEHSTTDLR 460
L QE + ++ ++ ++K ++ KQ+ + Q + + + L+
Sbjct: 7428 KLKQEADAKLQKEKDDKLKQEADAKLKKEKDDK-LKQEADAKLQKEKDDKLKQEADAKLK 7486
Query: 461 QAQVRHVDNLKTGGTFE-GKPKDDYMPVTAERPKQQKPKDNLRPEGDFERPTKVTPEKGE 519
+ + D LK + K KDD + A+ Q++ D L+ E D K+ EK +
Sbjct: 7487 KEKD---DKLKQEADAKLKKEKDDKLKQDADAKLQKEKDDKLKQEAD----AKLKKEKDD 7539
Query: 520 RPKAIKPKDNLKPEGEFERPVKEPLGPADRAPIIKHPDNLKLEGDFEDKPRPKAPERGER 579
+ +K + + K + E + +K+ AD A + K D+ KL+ D + K + + ++ +
Sbjct: 7540 K---LKHEADAKLKKEKDDKLKQE---AD-AKLKKEKDD-KLKQDADAKLKKEKDDKLKH 7591
Query: 580 ---APIRKPKD-NLYPEGDFERPEHQEYK-KGERPTAYKPHDNLKPEGEFERPIK-EKPK 633
A ++K KD N E + + + ++ K K E+ +K N K + E + +K EK
Sbjct: 7592 EADAKLQKEKDDNFKQEANAKLQKEKDDKLKQEKDDNFKQEANAKLQKEKDDKLKQEKDD 7651
Query: 634 QAERVEPFKVR----DNLKTEGEFE-GRPKDDYGPKVGDRAPVKKPQDN-LYPEGEFE-R 686
+ ++ K++ D LK E + + + KDD + D A +KK +D+ L E + + +
Sbjct: 7652 KLKQEADAKLKKEKDDKLKQEADAKLKKEKDDKLKQEAD-AKLKKDKDDKLKQEADAKLK 7710
Query: 687 PEYPEFQKAERPKAFKPH--DNLKPEGD--FERPVKEKPKQGERVEPIKVRDN-LKPEGE 741
E + K E K D LK E D ++ +K KQ + K +D+ LK E
Sbjct: 7711 KEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADAKLKKEKDDKLKQE-- 7768
Query: 742 FEGRPKDDYGPKIGDRAPVKKPQDNLYPEGEFE-RPEYPEFQKAERPKAFKPH--DNLKP 798
K+D + D K+ D L E + + + E + K E K D LK
Sbjct: 7769 -----KNDKLKQEADAKLKKEKDDKLKQEADAKLKKEKDDKLKQETDAKLKKDKDDKLKQ 7823
Query: 799 EGD--FERPVKEKPKQAERVEAFKMKDN-LKPEGDFEGRPKDDYGPKVGDRAP--VKKPQ 853
E D ++ +K KQ + K KD+ LK E D G+ K + K+ A +KK +
Sbjct: 7824 EADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEAD--GKLKKEKDNKLKQEADGKLKKEK 7881
Query: 854 DN-LYPEGEFE-RPEYPEFQKGERPKAFKPH--DNLKPEGD--FERPVKEKPKQAEKVEA 907
DN L E + + + E + K E K D LK E D ++ +K KQ +
Sbjct: 7882 DNKLKQEADAKLKKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKL 7941
Query: 908 FKMKDN-LKPEGDFE-GRPKDDYGPKVGDRAPVKKPQDNLYPEGEFERPEYQEFQKAERP 965
K KD+ LK E D + + KDD + + K+ D L E + K ++
Sbjct: 7942 KKEKDDKLKQEADAKLKKDKDDKLKQEANAKLQKEKDDKLKQEAD---------AKLQKE 7992
Query: 966 KAFKPHDNLKPEGDFERPIKEKPKQAERVEPFKLR----DNLKPEGEFE-GRPKDDYGPK 1020
K D LK E D + KEK + ++ KL+ D LK E + + + KDD +
Sbjct: 7993 K----DDKLKQEADAKLK-KEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQ 8047
Query: 1021 VGDRAPVKKPQDNLYPEGEFERPEYPEFQKAERPKAFKPHDNLKPEGD--FERPVKEKPK 1078
D K+ DN E + + +K ++ K K D LK E D ++ +K K
Sbjct: 8048 EADAKLQKEKDDNFKQEANAKLQK----EKDDKLKQEKD-DKLKQEADAKLKKEKDDKLK 8102
Query: 1079 QAERVEAFKMKDN-LKPEGDFE-GRPKDDYGPKVGDRAPVKKPQDNLYPEGE--FERPEY 1134
Q + K KD+ LK E D + + KDD + D K+ D L E + ++ +
Sbjct: 8103 QEADAKLKKDKDDKLKQEADAKLKKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKDKD 8162
Query: 1135 PEF-QKAERPMAFKPHDNLKPEGDFERPVKEKPKQAERVEPFKVK----DNLKPEGEFE- 1188
+ Q+A+ + D LK E D + KEK + ++ K+K D LK E + +
Sbjct: 8163 DKLKQEADAKLKKDKDDKLKQEADAKLK-KEKDDKLKQETDAKLKKDKDDKLKQEADAKL 8221
Query: 1189 GRPKDDYGPKVGDRAPVKKPQDNLYPEGEFE-RPEYPEFQKAERPKAFKPH--DNLKPEG 1245
+ KDD + D K+ D L E + + + E + K E K D LK E
Sbjct: 8222 KKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEA 8281
Query: 1246 D--FDRPVKEKPKQAERVEPFKVKDN-LKPEGDFEGRPKDD 1283
D + +K KQ + K KDN LK E D + + + D
Sbjct: 8282 DAKLKKDKDDKLKQEADGKLKKEKDNKLKQEADGKLKKEKD 8322
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| FB|FBgn0052602 Muc12Ea "Mucin 12Ea" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9P515 NEFH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PNP2 NEFH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| MGI|MGI:98864 Ttn "titin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PZZ3 NEFH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1N757 F1N757 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MSQ6 NEFH "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8WZ42 TTN "Titin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9P010 NEFH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
No hit with e-value below 0.005
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1301 | |||
| PF05217 | 215 | STOP: STOP protein; InterPro: IPR007882 Neurons co | 96.48 | |
| PF05217 | 215 | STOP: STOP protein; InterPro: IPR007882 Neurons co | 96.19 |
| >PF05217 STOP: STOP protein; InterPro: IPR007882 Neurons contain abundant subsets of highly stable microtubules that resist de-polymerising conditions such as exposure to the cold | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.019 Score=60.76 Aligned_cols=100 Identities=15% Similarity=0.236 Sum_probs=55.7
Q ss_pred chhhhhcccccchhhhcccCCCccc-CCceEEeccccccccccCCccccccccccccccCCcceeccCccccccccCCcc
Q psy9511 380 SSETFQAHQIIKKEEIRRREDNLVQ-EGEMIFVTSAHEEFTEKTPERVKPQRRRTWTKQDGEIYFQTTSATEFTEHSTTD 458 (1301)
Q Consensus 380 ~~~~y~~~~~~ER~~~~rp~DNLr~-EGef~~~t~~~~df~~~~~e~~~~~~~~~~~k~eg~~~~~~~~k~~~~~~~~~g 458 (1301)
++++|..|. +.+...+++..+..+ .+-|...|+++.+|+....++++..
T Consensus 103 y~~dy~~~~-~~~~~~~kp~~~~~~~~~pF~~~TtYr~~y~~~~~~~~~~~----------------------------- 152 (215)
T PF05217_consen 103 YKSDYPPKP-IPPPPSFKPPNQPTSSDAPFDGETTYRDDYQPWQGQRPKPE----------------------------- 152 (215)
T ss_pred cccccccCC-CCcccccCCCCCCCCCCCCccccccCccccccCcccccCcc-----------------------------
Confidence 455666543 334455555554444 4667778888888886433221111
Q ss_pred ccccccccC-CCcccCCccCCCC-CCCCCccCCCCCCC--CCCCCCCCCCCCccCCC
Q psy9511 459 LRQAQVRHV-DNLKTGGTFEGKP-KDDYMPVTAERPKQ--QKPKDNLRPEGDFERPT 511 (1301)
Q Consensus 459 ERp~~vrp~-DNL~pEG~Fe~~~-k~dy~p~~aERp~~--kkP~DNL~pEGdFe~~~ 511 (1301)
+..+.+. -.+.+.+.|++.| +.+|.+..+++..+ ++...++.+...|.+..
T Consensus 153 --~~~~~~~~~~~p~~~pF~~~T~~~~y~~~~~~~~~~~~~~~~~~~~~~~~F~gq~ 207 (215)
T PF05217_consen 153 --PKFKPPKETYSPPSGPFDGTTYQSDYQPKQGEPAKSPCKPTSQPPQPSPSFQGQF 207 (215)
T ss_pred --ccccccccccCCCCCcccCCccccccCCCCCCcccccccCccCCCCcCcCccccc
Confidence 0011111 1234577888776 88999988888873 33344444555555443
|
Stable microtubules are thought to be essential for neuronal development, maintenance, and function. STOP is a major factor responsible for the intriguing stability properties of neuronal microtubules and is important for synaptic plasticity. STOPs (for stable tubule only polypeptides) are calmodulin-binding and calmodulin-regulated proteins which, in mammals, are encoded by a single gene but exhibit substantial cell specific variability due to mRNA splicing and alternative promoter use. STOP microtubule stabilising activity has been ascribed to two classes of new bifunctional calmodulin- and microtubule-binding motifs, with distinct microtubule binding properties in vivo. STOPs seem to be restricted to vertebrates and are composed of a conserved domain split by the apparent insertion of variable sequences that are completely unrelated among species []. N-STOP (for neuronal adult STOP) contains two repeat domains. The central repeat domain is composed of five repeated sequences of 46 amino acids. These sequences are almost completely identical, exhibiting an unusual degree of conservation of the repeat motif, compared to repeated sequences in other microtubule-associated proteins. The carboxy-terminal repeat domain is composed of 28 imperfect repeats of an 11 amino acid consensus sequence. Upstream of the carboxy-terminal repeat domain, rat N-STOP contains a highly basic sequence (called the "KR domain" after its high content in lysine and arginine residues) and a so-called "linker domain" located between the central repeat domain and the KR domain. To date, two splicing variants of STOP, E-STOP and F-STOP, have been characterised in rodents. Knowledge of STOPs function and properties may help in the treatment of neuroleptics in illnesses such as schizophrenia, currently thought to result from synaptic defects []. |
| >PF05217 STOP: STOP protein; InterPro: IPR007882 Neurons contain abundant subsets of highly stable microtubules that resist de-polymerising conditions such as exposure to the cold | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00