Psyllid ID: psy9533

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70---
Protein Sequence
MSFVWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKLMKSLERQVGPLTTPIL
Secondary Structure (PSIPRED)
ccEEEEEHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MSFVWFQNRRAKWRkkehtkkgpgrpahnahpvtcsgdpipaeELKRKERARRQKKLMKSLErqvgplttpil
Flexible Loop (DISEMBL)
msfvwfqnrrakwrkkehtkkgpgrpahnahpvtcsgdpipaeelKRKERARRQKKlmkslerqvgplttpil
Low Complexity Region (SEG)
MSFVWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPaeelkrkerarrqkklMKSLERQVGPLTTPIL
Disordered region (IsUnstruct)
***VWF*******************************************************************
Disordered Region (DISOPRED)
*SFVW**N**********************************************************PL*TPI*
Disordered Region (DISEMBL)
MSFVWFQNR*******************NAHPVTCSGDPIPAEELKRKERARRQKKLMKSLERQVGPLTTPIL
Disordered Region (DISPRO)
*SFVWFQNRRAKWRK**********************DPIPAEELKRKERARRQKKLMKSLERQVGPL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFVWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKLMKSLERQVGPLTTPIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	73	2.2.26 [Sep-21-2011]
O77215	428	Homeobox protein unc-4 OS	yes	N/A	0.849	0.144	0.774	3e-22
Q50D79	470	Homeobox protein unc-4 ho	yes	N/A	0.671	0.104	0.755	4e-17
P97830	530	Homeobox protein unc-4 ho	yes	N/A	0.602	0.083	0.795	1e-15
O08934	530	Homeobox protein unc-4 ho	yes	N/A	0.602	0.083	0.795	1e-15
A6NJT0	531	Homeobox protein unc-4 ho	yes	N/A	0.602	0.082	0.795	1e-15

>sp|O77215|UNC4_DROME Homeobox protein unc-4 OS=Drosophila melanogaster GN=unc-4 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 54/62 (87%)

Query: 4   VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKLMKSLER 63
           VWFQNRRAK RK+EHTKKGPGRPAHNA P TCSG+PIP  ELK KERARR+KKL K+++R
Sbjct: 129 VWFQNRRAKVRKREHTKKGPGRPAHNAQPQTCSGEPIPPNELKAKERARRRKKLAKAIDR 188

Query: 64  QV 65
           Q 
Sbjct: 189 QA 190

Transcription factor that regulates synaptic specificity.
Drosophila melanogaster (taxid: 7227)

>sp|Q50D79|UNC4_DANRE Homeobox protein unc-4 homolog OS=Danio rerio GN=uncx PE=2 SV=2

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 43/49 (87%)

Query: 4   VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERAR 52
           VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+  EE+ R+E  R
Sbjct: 147 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPMDPEEIARRELER 195

Transcription factor involved in somitogenesis and neurogenesis.

Danio rerio (taxid: 7955)

>sp|P97830|UNC4_RAT Homeobox protein unc-4 homolog OS=Rattus norvegicus GN=Uncx PE=2 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 40/44 (90%)

Query: 4   VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKR 47
           VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+  EE+ R
Sbjct: 155 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPMDPEEIAR 198

Transcription factor involved in somitogenesis and neurogenesis. Required for the maintenance and differentiation of particular elements of the axial skeleton. May act upstream of PAX9. Plays a role in controlling the development of connections of hypothalamic neurons to pituitary elements, allowing central neurons to reach the peripheral blood circulation and to deliver hormones for control of peripheral functions.

Rattus norvegicus (taxid: 10116)

>sp|O08934|UNC4_MOUSE Homeobox protein unc-4 homolog OS=Mus musculus GN=Uncx PE=2 SV=2

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 40/44 (90%)

Query: 4   VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKR 47
           VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+  EE+ R
Sbjct: 155 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPMDPEEIAR 198

Transcription factor involved in somitogenesis and neurogenesis. Required for the maintenance and differentiation of particular elements of the axial skeleton. May act upstream of PAX9. Plays a role in controlling the development of connections of hypothalamic neurons to pituitary elements, allowing central neurons to reach the peripheral blood circulation and to deliver hormones for control of peripheral functions.

Mus musculus (taxid: 10090)

>sp|A6NJT0|UNC4_HUMAN Homeobox protein unc-4 homolog OS=Homo sapiens GN=UNCX PE=2 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 40/44 (90%)

Query: 4   VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKR 47
           VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+  EE+ R
Sbjct: 151 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPMDPEEIAR 194

Transcription factor involved in somitogenesis and neurogenesis. Required for the maintenance and differentiation of particular elements of the axial skeleton. May act upstream of PAX9. Plays a role in controlling the development of connections of hypothalamic neurons to pituitary elements, allowing central neurons to reach the peripheral blood circulation and to deliver hormones for control of peripheral functions.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
391342806	525	PREDICTED: uncharacterized protein LOC10	0.849	0.118	0.790	3e-22
312374887	198	hypothetical protein AND_15378 [Anophele	0.863	0.318	0.777	4e-22
195447188	637	GK25621 [Drosophila willistoni] gi|19416	0.849	0.097	0.774	1e-20
18860107	428	unc-4 [Drosophila melanogaster] gi|54036	0.849	0.144	0.774	1e-20
56411858	414	paired-type homeodomain protein [Drosoph	0.849	0.149	0.774	2e-20
56411856	414	paired-type homeodomain protein [Drosoph	0.849	0.149	0.774	2e-20
195132007	278	GI14688 [Drosophila mojavensis] gi|19390	0.849	0.223	0.741	2e-20
56411860	414	paired-type homeodomain protein [Drosoph	0.849	0.149	0.774	2e-20
45549140	382	Ods-site homeobox [Drosophila melanogast	0.890	0.170	0.692	2e-20
56411862	357	paired-type homeodomain protein [Drosoph	0.849	0.173	0.774	2e-20

>gi|391342806|ref|XP_003745706.1| PREDICTED: uncharacterized protein LOC100900460 [Metaseiulus occidentalis]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 56/62 (90%)

Query: 4   VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKLMKSLER 63
           VWFQNRRAKWRKKE+TKKGPGRPAHNAHP TCSGDPIP EE++R+ER +++KKL K LER
Sbjct: 167 VWFQNRRAKWRKKENTKKGPGRPAHNAHPQTCSGDPIPPEEIERRERDKKEKKLRKQLER 226

Query: 64  QV 65
           Q 
Sbjct: 227 QT 228

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374887|gb|EFR22356.1| hypothetical protein AND_15378 [Anopheles darlingi]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 56/63 (88%)

Query: 3   FVWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKLMKSLE 62
            VWFQNRRAKWRKKEHTKKGPGRPAHNAHP +CSG+PIP  ELK +E+ARR+KK+ K+LE
Sbjct: 38  VVWFQNRRAKWRKKEHTKKGPGRPAHNAHPQSCSGEPIPPNELKAREKARRRKKIAKALE 97

Query: 63  RQV 65
           RQ 
Sbjct: 98  RQA 100

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195447188|ref|XP_002071103.1| GK25621 [Drosophila willistoni] gi|194167188|gb|EDW82089.1| GK25621 [Drosophila willistoni]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 54/62 (87%)

Query: 4   VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKLMKSLER 63
           VWFQNRRAK RK+EHTKKGPGRPAHNA P TCSG+PIP  ELK KERARR+KKL K+++R
Sbjct: 321 VWFQNRRAKVRKREHTKKGPGRPAHNAQPQTCSGEPIPPNELKAKERARRRKKLAKAIDR 380

Query: 64  QV 65
           Q 
Sbjct: 381 QA 382

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|18860107|ref|NP_573242.1| unc-4 [Drosophila melanogaster] gi|54036548|sp|O77215.1|UNC4_DROME RecName: Full=Homeobox protein unc-4; AltName: Full=Paired-like homeodomain protein unc-4; Short=DPHD-1 gi|3641287|gb|AAC36333.1| paired-like homeodomain protein UNC-4 [Drosophila melanogaster] gi|7293384|gb|AAF48762.1| unc-4 [Drosophila melanogaster] gi|115646544|gb|ABJ17079.1| RT01021p [Drosophila melanogaster]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 54/62 (87%)

Query: 4   VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKLMKSLER 63
           VWFQNRRAK RK+EHTKKGPGRPAHNA P TCSG+PIP  ELK KERARR+KKL K+++R
Sbjct: 129 VWFQNRRAKVRKREHTKKGPGRPAHNAQPQTCSGEPIPPNELKAKERARRRKKLAKAIDR 188

Query: 64  QV 65
           Q 
Sbjct: 189 QA 190

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56411858|gb|AAV88499.1| paired-type homeodomain protein [Drosophila mauritiana]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 54/62 (87%)

Query: 4   VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKLMKSLER 63
           VWFQNRRAK RK+EHTKKGPGRPAHNA P TCSG+PIP  ELK KERARR+KKL K+++R
Sbjct: 115 VWFQNRRAKVRKREHTKKGPGRPAHNAQPQTCSGEPIPPNELKAKERARRRKKLAKAIDR 174

Query: 64  QV 65
           Q 
Sbjct: 175 QA 176

Source: Drosophila mauritiana

Species: Drosophila mauritiana

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56411856|gb|AAV88498.1| paired-type homeodomain protein [Drosophila simulans]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 54/62 (87%)

Query: 4   VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKLMKSLER 63
           VWFQNRRAK RK+EHTKKGPGRPAHNA P TCSG+PIP  ELK KERARR+KKL K+++R
Sbjct: 115 VWFQNRRAKVRKREHTKKGPGRPAHNAQPQTCSGEPIPPNELKAKERARRRKKLAKAIDR 174

Query: 64  QV 65
           Q 
Sbjct: 175 QA 176

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195132007|ref|XP_002010435.1| GI14688 [Drosophila mojavensis] gi|193908885|gb|EDW07752.1| GI14688 [Drosophila mojavensis]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 54/62 (87%)

Query: 4   VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKLMKSLER 63
           VWFQNRRAKWRKKEHTKKGPGRPAHNA P +CSG PIP +EL+ KERA+R K++ K++ER
Sbjct: 97  VWFQNRRAKWRKKEHTKKGPGRPAHNAQPQSCSGAPIPLQELRAKERAQRSKRIAKAIER 156

Query: 64  QV 65
           Q 
Sbjct: 157 QA 158

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56411860|gb|AAV88500.1| paired-type homeodomain protein [Drosophila sechellia]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 54/62 (87%)

Query: 4   VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKLMKSLER 63
           VWFQNRRAK RK+EHTKKGPGRPAHNA P TCSG+PIP  ELK KERARR+KKL K+++R
Sbjct: 115 VWFQNRRAKVRKREHTKKGPGRPAHNAQPQTCSGEPIPPNELKAKERARRRKKLAKAIDR 174

Query: 64  QV 65
           Q 
Sbjct: 175 QA 176

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45549140|ref|NP_523389.3| Ods-site homeobox [Drosophila melanogaster] gi|45447036|gb|AAF48763.2| Ods-site homeobox [Drosophila melanogaster] gi|66571138|gb|AAY51534.1| IP01524p [Drosophila melanogaster] gi|220953336|gb|ACL89211.1| OdsH-PA [synthetic construct]

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/65 (69%), Positives = 55/65 (84%)

Query: 4   VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKLMKSLER 63
           VWFQNRRAKWRK+EHTKKGPGRPAHNAHP +CSGDPIP  EL+ +E A+R K++ K+++R
Sbjct: 204 VWFQNRRAKWRKQEHTKKGPGRPAHNAHPQSCSGDPIPLSELRARELAQRSKRMKKAIDR 263

Query: 64  QVGPL 68
           Q   L
Sbjct: 264 QAKKL 268

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56411862|gb|AAV88501.1| paired-type homeodomain protein [Drosophila yakuba]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 54/62 (87%)

Query: 4  VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKLMKSLER 63
          VWFQNRRAK RK+EHTKKGPGRPAHNA P TCSG+PIP  ELK KERARR+KKL K+++R
Sbjct: 37 VWFQNRRAKVRKREHTKKGPGRPAHNAQPQTCSGEPIPPNELKAKERARRRKKLAKAIDR 96

Query: 64 QV 65
          Q 
Sbjct: 97 QA 98

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
FB|FBgn0026058	382	OdsH "Ods-site homeobox" [Dros	0.890	0.170	0.6	1.2e-17
ZFIN|ZDB-GENE-050714-1	470	uncx4.1 "Unc4.1 homeobox (C. e	0.506	0.078	0.864	6e-15
UNIPROTKB|I3L874	518	UNCX "Uncharacterized protein"	0.506	0.071	0.864	7.4e-15
UNIPROTKB|F1RIW6	523	UNCX "Uncharacterized protein"	0.506	0.070	0.864	7.5e-15
MGI|MGI:108013	530	Uncx "UNC homeobox" [Mus muscu	0.506	0.069	0.864	7.7e-15
RGD|69361	530	Uncx "UNC homeobox" [Rattus no	0.506	0.069	0.864	7.7e-15
UNIPROTKB|P97830	530	Uncx "Homeobox protein unc-4 h	0.506	0.069	0.864	7.7e-15
UNIPROTKB|A6NJT0	531	UNCX "Homeobox protein unc-4 h	0.506	0.069	0.864	7.7e-15
FB|FBgn0024184	428	unc-4 "unc-4" [Drosophila mela	0.890	0.151	0.569	7.8e-15
UNIPROTKB|E2R5H2	538	UNCX "Uncharacterized protein"	0.506	0.068	0.864	8e-15

FB|FBgn0026058 OdsH "Ods-site homeobox" [Drosophila melanogaster (taxid:7227)]

 Score = 219 (82.2 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 39/65 (60%), Positives = 44/65 (67%)

Query:     4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPXXXXXXXXXXXXXXXXMKSLER 63
             VWFQNRRAKWRK+EHTKKGPGRPAHNAHP +CSGDPIP                 K+++R
Sbjct:   204 VWFQNRRAKWRKQEHTKKGPGRPAHNAHPQSCSGDPIPLSELRARELAQRSKRMKKAIDR 263

Query:    64 QVGPL 68
             Q   L
Sbjct:   264 QAKKL 268

GO:0005634 "nucleus" evidence=IEA;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;NAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0032504 "multicellular organism reproduction" evidence=IEP

GO:0005615 "extracellular space" evidence=IDA

ZFIN|ZDB-GENE-050714-1 uncx4.1 "Unc4.1 homeobox (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 197 (74.4 bits), Expect = 6.0e-15, P = 6.0e-15
 Identities = 32/37 (86%), Positives = 36/37 (97%)

Query:     4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPI 40
             VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+
Sbjct:   147 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPM 183

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

UNIPROTKB|I3L874 UNCX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 197 (74.4 bits), Expect = 7.4e-15, P = 7.4e-15
 Identities = 32/37 (86%), Positives = 36/37 (97%)

Query:     4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPI 40
             VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+
Sbjct:   156 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPM 192

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|F1RIW6 UNCX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 197 (74.4 bits), Expect = 7.5e-15, P = 7.5e-15
 Identities = 32/37 (86%), Positives = 36/37 (97%)

Query:     4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPI 40
             VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+
Sbjct:   156 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPM 192

GO:0005634 "nucleus" evidence=IEA

GO:0045595 "regulation of cell differentiation" evidence=IEA

GO:0035726 "common myeloid progenitor cell proliferation" evidence=IEA

GO:0021889 "olfactory bulb interneuron differentiation" evidence=IEA

GO:0021516 "dorsal spinal cord development" evidence=IEA

GO:0007389 "pattern specification process" evidence=IEA

GO:0001502 "cartilage condensation" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

MGI|MGI:108013 Uncx "UNC homeobox" [Mus musculus (taxid:10090)]

 Score = 197 (74.4 bits), Expect = 7.7e-15, P = 7.7e-15
 Identities = 32/37 (86%), Positives = 36/37 (97%)

Query:     4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPI 40
             VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+
Sbjct:   155 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPM 191

GO:0001502 "cartilage condensation" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007389 "pattern specification process" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0021516 "dorsal spinal cord development" evidence=IMP

GO:0021889 "olfactory bulb interneuron differentiation" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0035726 "common myeloid progenitor cell proliferation" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045595 "regulation of cell differentiation" evidence=IMP

RGD|69361 Uncx "UNC homeobox" [Rattus norvegicus (taxid:10116)]

 Score = 197 (74.4 bits), Expect = 7.7e-15, P = 7.7e-15
 Identities = 32/37 (86%), Positives = 36/37 (97%)

Query:     4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPI 40
             VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+
Sbjct:   155 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPM 191

GO:0001502 "cartilage condensation" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007389 "pattern specification process" evidence=IEA;ISO

GO:0007399 "nervous system development" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=ISO

GO:0021516 "dorsal spinal cord development" evidence=IEA;ISO

GO:0021889 "olfactory bulb interneuron differentiation" evidence=IEA;ISO

GO:0030154 "cell differentiation" evidence=IEA

GO:0035726 "common myeloid progenitor cell proliferation" evidence=IEA;ISO

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045595 "regulation of cell differentiation" evidence=IEA;ISO

UNIPROTKB|P97830 Uncx "Homeobox protein unc-4 homolog" [Rattus norvegicus (taxid:10116)]

 Score = 197 (74.4 bits), Expect = 7.7e-15, P = 7.7e-15
 Identities = 32/37 (86%), Positives = 36/37 (97%)

Query:     4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPI 40
             VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+
Sbjct:   155 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPM 191

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|A6NJT0 UNCX "Homeobox protein unc-4 homolog" [Homo sapiens (taxid:9606)]

 Score = 197 (74.4 bits), Expect = 7.7e-15, P = 7.7e-15
 Identities = 32/37 (86%), Positives = 36/37 (97%)

Query:     4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPI 40
             VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+
Sbjct:   151 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPM 187

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0001502 "cartilage condensation" evidence=IEA

GO:0007389 "pattern specification process" evidence=IEA

GO:0021516 "dorsal spinal cord development" evidence=IEA

GO:0021889 "olfactory bulb interneuron differentiation" evidence=IEA

GO:0035726 "common myeloid progenitor cell proliferation" evidence=IEA

GO:0045595 "regulation of cell differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0024184 unc-4 "unc-4" [Drosophila melanogaster (taxid:7227)]

 Score = 195 (73.7 bits), Expect = 7.8e-15, P = 7.8e-15
 Identities = 37/65 (56%), Positives = 42/65 (64%)

Query:     4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPXXXXXXXXXXXXXXXXMKSLER 63
             VWFQNRRAK RK+EHTKKGPGRPAHNA P TCSG+PIP                 K+++R
Sbjct:   129 VWFQNRRAKVRKREHTKKGPGRPAHNAQPQTCSGEPIPPNELKAKERARRRKKLAKAIDR 188

Query:    64 QVGPL 68
             Q   L
Sbjct:   189 QARKL 193

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|E2R5H2 UNCX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 197 (74.4 bits), Expect = 8.0e-15, P = 8.0e-15
 Identities = 32/37 (86%), Positives = 36/37 (97%)

Query:     4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPI 40
             VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+
Sbjct:   155 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPM 191

GO:0005634 "nucleus" evidence=IEA

GO:0045595 "regulation of cell differentiation" evidence=IEA

GO:0035726 "common myeloid progenitor cell proliferation" evidence=IEA

GO:0021889 "olfactory bulb interneuron differentiation" evidence=IEA

GO:0021516 "dorsal spinal cord development" evidence=IEA

GO:0007389 "pattern specification process" evidence=IEA

GO:0001502 "cartilage condensation" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P97830	UNC4_RAT	No assigned EC number	0.7954	0.6027	0.0830	yes	N/A
Q50D79	UNC4_DANRE	No assigned EC number	0.7551	0.6712	0.1042	yes	N/A
O77215	UNC4_DROME	No assigned EC number	0.7741	0.8493	0.1448	yes	N/A
A6NJT0	UNC4_HUMAN	No assigned EC number	0.7954	0.6027	0.0828	yes	N/A
O08934	UNC4_MOUSE	No assigned EC number	0.7954	0.6027	0.0830	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	73
pfam00046	57	pfam00046, Homeobox, Homeobox domain	8e-04

>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain

 Score = 33.6 bits (78), Expect = 8e-04
 Identities = 10/13 (76%), Positives = 12/13 (92%)

Query: 3  FVWFQNRRAKWRK 15
           VWFQNRRAKW++
Sbjct: 45 KVWFQNRRAKWKR 57

Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	73
KOG0489|consensus	261		99.41
KOG0487|consensus	308		99.14
KOG0488|consensus	309		99.1
KOG0848|consensus	317		99.0
KOG0850|consensus	245		98.96
KOG0484|consensus	125		98.93
KOG0494|consensus	332		98.85
KOG0842|consensus	307		98.85
KOG0485|consensus	268		98.8
KOG0491|consensus	194		98.77
KOG0844|consensus	408		98.7
KOG0847|consensus	288		98.69
KOG0483|consensus	198		98.69
KOG0492|consensus	246		98.63
KOG0843|consensus	197		98.62
KOG2251|consensus	228		98.4
KOG0490|consensus	235		98.36
KOG4577|consensus	383		98.35
COG5576	156	Homeodomain-containing transcription factor [Trans	98.3
KOG0486|consensus	351		97.89
KOG0493|consensus	342		97.84
KOG0849|consensus	354		97.02
KOG3802|consensus	398		95.51
KOG0490|consensus	235		94.34
KOG0775|consensus	304		83.85
KOG1168|consensus	385		80.04

>KOG0489|consensus

Probab=99.41  E-value=6.8e-14  Score=100.05  Aligned_cols=22  Identities=45%  Similarity=0.977  Sum_probs=19.6

Q ss_pred             ccccCchhHHHHHhhhcCCCCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTKKGP   23 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~~~~   23 (73)
                      ||||||||||||||.++.....
T Consensus       203 IKIWFQNRRMK~Kk~~k~~~~~  224 (261)
T KOG0489|consen  203 IKIWFQNRRMKWKKENKAKSSQ  224 (261)
T ss_pred             HHHHHHHHHHHHHHhhcccccc
Confidence            8999999999999988877655

>KOG0487|consensus

Probab=99.14  E-value=1.2e-11  Score=91.00  Aligned_cols=20  Identities=40%  Similarity=0.720  Sum_probs=17.5

Q ss_pred             ccccCchhHHHHHhhhcCCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTKK   21 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~~   21 (73)
                      |||||||||||.||..+...
T Consensus       279 VKIWFQNRRMK~KK~~re~r  298 (308)
T KOG0487|consen  279 VKIWFQNRRMKEKKVNRENR  298 (308)
T ss_pred             eeeeehhhhhHHhhhhhhhh
Confidence            99999999999999886444

>KOG0488|consensus

Probab=99.10  E-value=1.3e-11  Score=90.57  Aligned_cols=17  Identities=47%  Similarity=1.113  Sum_probs=15.6

Q ss_pred             ccccCchhHHHHHhhhc
Q psy9533           2 SFVWFQNRRAKWRKKEH   18 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~   18 (73)
                      ||+|||||||||||+..
T Consensus       216 VKtWfQNRRtKWKrq~a  232 (309)
T KOG0488|consen  216 VKTWFQNRRTKWKRQTA  232 (309)
T ss_pred             HHHHHhhhhHHHHHHHH
Confidence            99999999999999844

>KOG0848|consensus

Probab=99.00  E-value=7.6e-11  Score=86.19  Aligned_cols=19  Identities=58%  Similarity=0.884  Sum_probs=17.7

Q ss_pred             ccccCchhHHHHHhhhcCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTK   20 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~   20 (73)
                      |||||||||||.||.++.+
T Consensus       243 VKIWFQNRRAKERK~nKKk  261 (317)
T KOG0848|consen  243 VKIWFQNRRAKERKDNKKK  261 (317)
T ss_pred             hhHhhhhhhHHHHHHHHHH
Confidence            8999999999999998776

>KOG0850|consensus

Probab=98.96  E-value=4.3e-10  Score=80.46  Aligned_cols=19  Identities=42%  Similarity=0.847  Sum_probs=16.9

Q ss_pred             ccccCchhHHHHHhhhcCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTK   20 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~   20 (73)
                      |||||||||.|+||..+-+
T Consensus       166 VKIWFQNrRSK~KKl~k~g  184 (245)
T KOG0850|consen  166 VKIWFQNRRSKFKKLKKQG  184 (245)
T ss_pred             hhhhhhhhHHHHHHHHhcC
Confidence            9999999999999987733

>KOG0484|consensus

Probab=98.93  E-value=1.4e-10  Score=75.18  Aligned_cols=18  Identities=67%  Similarity=1.116  Sum_probs=16.6

Q ss_pred             ccccCchhHHHHHhhhcC
Q psy9533           2 SFVWFQNRRAKWRKKEHT   19 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~   19 (73)
                      |+|||||||||+|||++.
T Consensus        61 VQVWFQNRRAKfRKQEr~   78 (125)
T KOG0484|consen   61 VQVWFQNRRAKFRKQERA   78 (125)
T ss_pred             HHHHHHhhHHHHHHHHHH
Confidence            899999999999999873

>KOG0494|consensus

Probab=98.85  E-value=8.4e-10  Score=80.77  Aligned_cols=20  Identities=65%  Similarity=1.054  Sum_probs=17.5

Q ss_pred             ccccCchhHHHHHhhhcCCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTKK   21 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~~   21 (73)
                      |+||||||||||||.++.-.
T Consensus       185 IqVWfQNRRAKWRk~Ek~wg  204 (332)
T KOG0494|consen  185 IQVWFQNRRAKWRKTEKRWG  204 (332)
T ss_pred             hhHHhhhhhHHhhhhhhhcC
Confidence            79999999999999987543

>KOG0842|consensus

Probab=98.85  E-value=8.7e-10  Score=81.29  Aligned_cols=21  Identities=38%  Similarity=0.651  Sum_probs=18.6

Q ss_pred             ccccCchhHHHHHhhhcCCCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTKKG   22 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~~~   22 (73)
                      |||||||||.|.||+...+..
T Consensus       197 VKIWFQNrRYK~KR~~~dk~~  217 (307)
T KOG0842|consen  197 VKIWFQNRRYKTKRQQKDKAL  217 (307)
T ss_pred             eeeeeecchhhhhhhhhhhhh
Confidence            999999999999999876653

>KOG0485|consensus

Probab=98.80  E-value=1e-09  Score=78.57  Aligned_cols=15  Identities=53%  Similarity=1.329  Sum_probs=14.7

Q ss_pred             ccccCchhHHHHHhh
Q psy9533           2 SFVWFQNRRAKWRKK   16 (73)
Q Consensus         2 VKIWFQNRRaKwKKq   16 (73)
                      |||||||||-||||+
T Consensus       148 VKIWFQNRRnKwKRq  162 (268)
T KOG0485|consen  148 VKIWFQNRRNKWKRQ  162 (268)
T ss_pred             hhhhhhhhhHHHHHH
Confidence            899999999999998

>KOG0491|consensus

Probab=98.77  E-value=2.7e-09  Score=73.72  Aligned_cols=23  Identities=35%  Similarity=0.655  Sum_probs=19.6

Q ss_pred             ccccCchhHHHHHhhhcCCCCCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTKKGPG   24 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~~~~~   24 (73)
                      ||.||||||||.||+.+...+.+
T Consensus       144 VKTWFQNrRMK~Kk~~r~~~p~n  166 (194)
T KOG0491|consen  144 VKTWFQNRRMKHKKQQRNNQPKN  166 (194)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCC
Confidence            89999999999999987666443

>KOG0844|consensus

Probab=98.70  E-value=3.5e-09  Score=79.03  Aligned_cols=19  Identities=42%  Similarity=0.669  Sum_probs=16.6

Q ss_pred             CccccCchhHHHHHhhhcC
Q psy9533           1 MSFVWFQNRRAKWRKKEHT   19 (73)
Q Consensus         1 ~VKIWFQNRRaKwKKq~~~   19 (73)
                      +|||||||||||.|||.-.
T Consensus       224 TIKVWFQNRRMKDKRQRla  242 (408)
T KOG0844|consen  224 TIKVWFQNRRMKDKRQRLA  242 (408)
T ss_pred             eeehhhhhchhhhhhhhhh
Confidence            5899999999999998543

>KOG0847|consensus

Probab=98.69  E-value=6e-09  Score=74.94  Aligned_cols=17  Identities=71%  Similarity=1.271  Sum_probs=15.1

Q ss_pred             ccccCchhHHHHHhhhc
Q psy9533           2 SFVWFQNRRAKWRKKEH   18 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~   18 (73)
                      |||||||||.||||...
T Consensus       211 vkVWFQNRRTKWRKkhA  227 (288)
T KOG0847|consen  211 VKVWFQNRRTKWRKKHA  227 (288)
T ss_pred             HHHHHhcchhhhhhhhc
Confidence            89999999999999643

>KOG0483|consensus

Probab=98.69  E-value=1.6e-09  Score=75.76  Aligned_cols=16  Identities=63%  Similarity=1.279  Sum_probs=14.4

Q ss_pred             CccccCchhHHHHHhh
Q psy9533           1 MSFVWFQNRRAKWRKK   16 (73)
Q Consensus         1 ~VKIWFQNRRaKwKKq   16 (73)
                      +|+||||||||+||..
T Consensus        93 QVavWFQNRRARwK~k  108 (198)
T KOG0483|consen   93 QVAVWFQNRRARWKTK  108 (198)
T ss_pred             HHHHHHhhccccccch
Confidence            5999999999999954

>KOG0492|consensus

Probab=98.63  E-value=8.3e-09  Score=73.47  Aligned_cols=18  Identities=44%  Similarity=0.813  Sum_probs=15.8

Q ss_pred             ccccCchhHHHHHhhhcC
Q psy9533           2 SFVWFQNRRAKWRKKEHT   19 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~   19 (73)
                      |||||||||||-||....
T Consensus       188 VKIWFQNRRAKaKRlQea  205 (246)
T KOG0492|consen  188 VKIWFQNRRAKAKRLQEA  205 (246)
T ss_pred             eehhhhhhhHHHHHHHHH
Confidence            999999999999987543

>KOG0843|consensus

Probab=98.62  E-value=1.1e-08  Score=71.20  Aligned_cols=19  Identities=42%  Similarity=0.816  Sum_probs=16.8

Q ss_pred             ccccCchhHHHHHhhhcCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTK   20 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~   20 (73)
                      |||||||||.|.||.....
T Consensus       146 VkvWFQNRRtk~kr~~~e~  164 (197)
T KOG0843|consen  146 VKVWFQNRRTKHKRMQQED  164 (197)
T ss_pred             hhhhhhhhhHHHHHHHHHh
Confidence            9999999999999876654

>KOG2251|consensus

Probab=98.40  E-value=1.5e-07  Score=67.10  Aligned_cols=19  Identities=47%  Similarity=0.884  Sum_probs=16.8

Q ss_pred             CccccCchhHHHHHhhhcC
Q psy9533           1 MSFVWFQNRRAKWRKKEHT   19 (73)
Q Consensus         1 ~VKIWFQNRRaKwKKq~~~   19 (73)
                      .|||||.|||||||++.+-
T Consensus        80 rVqVWFKNRRAK~r~qq~q   98 (228)
T KOG2251|consen   80 RVQVWFKNRRAKCRRQQQQ   98 (228)
T ss_pred             hhhhhhccccchhhHhhhh
Confidence            3999999999999988764

>KOG0490|consensus

Probab=98.36  E-value=2.1e-07  Score=63.16  Aligned_cols=18  Identities=67%  Similarity=0.905  Sum_probs=16.4

Q ss_pred             CccccCchhHHHHHhhhc
Q psy9533           1 MSFVWFQNRRAKWRKKEH   18 (73)
Q Consensus         1 ~VKIWFQNRRaKwKKq~~   18 (73)
                      .|+|||||||+||+++++
T Consensus       103 rVqvwFqnrrak~r~~~~  120 (235)
T KOG0490|consen  103 RVQVWFQNRRAKDRKEER  120 (235)
T ss_pred             eeehhhhhhcHhhhhhhc
Confidence            489999999999999875

>KOG4577|consensus

Probab=98.35  E-value=1.1e-07  Score=70.73  Aligned_cols=19  Identities=47%  Similarity=0.788  Sum_probs=16.3

Q ss_pred             CccccCchhHHHHHhhhcC
Q psy9533           1 MSFVWFQNRRAKWRKKEHT   19 (73)
Q Consensus         1 ~VKIWFQNRRaKwKKq~~~   19 (73)
                      .|+|||||||||.||..+.
T Consensus       210 VVQVWFQNRRAKEKRLKKD  228 (383)
T KOG4577|consen  210 VVQVWFQNRRAKEKRLKKD  228 (383)
T ss_pred             ehhhhhhhhhHHHHhhhhh
Confidence            4899999999999987553

>COG5576 Homeodomain-containing transcription factor [Transcription]

Probab=98.30  E-value=3.2e-07  Score=62.07  Aligned_cols=19  Identities=53%  Similarity=0.830  Sum_probs=16.4

Q ss_pred             ccccCchhHHHHHhhhcCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTK   20 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~   20 (73)
                      |+|||||||+|-|+....+
T Consensus        95 VqIWFQNkR~~~k~~~~~~  113 (156)
T COG5576          95 VQIWFQNKRAKEKKKRSGK  113 (156)
T ss_pred             hhhhhchHHHHHHHhcccc
Confidence            8999999999999875543

>KOG0486|consensus

Probab=97.89  E-value=3.1e-06  Score=63.20  Aligned_cols=19  Identities=63%  Similarity=1.256  Sum_probs=16.8

Q ss_pred             ccccCchhHHHHHhhhcCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTK   20 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~   20 (73)
                      |.|||.|||+||||.++..
T Consensus       156 vrvwfknrrakwrkrErN~  174 (351)
T KOG0486|consen  156 VRVWFKNRRAKWRKRERNQ  174 (351)
T ss_pred             hhhhcccchhhhhhhhhhH
Confidence            8899999999999987744

>KOG0493|consensus

Probab=97.84  E-value=3.7e-06  Score=61.92  Aligned_cols=17  Identities=47%  Similarity=0.812  Sum_probs=15.0

Q ss_pred             ccccCchhHHHHHhhhc
Q psy9533           2 SFVWFQNRRAKWRKKEH   18 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~   18 (73)
                      |||||||.|+|-||-..
T Consensus       290 IKIWFQNKRAKiKKsTg  306 (342)
T KOG0493|consen  290 IKIWFQNKRAKIKKSTG  306 (342)
T ss_pred             hhHHhhhhhhhhhhccC
Confidence            89999999999999543

>KOG0849|consensus

Probab=97.02  E-value=0.00029  Score=52.72  Aligned_cols=17  Identities=65%  Similarity=1.304  Sum_probs=15.6

Q ss_pred             ccccCchhHHHHHhhhc
Q psy9533           2 SFVWFQNRRAKWRKKEH   18 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~   18 (73)
                      |.|||+|||+||+|+..
T Consensus       220 iqvwf~nrra~~rr~~~  236 (354)
T KOG0849|consen  220 VQVWFQNRRAKWRRQHR  236 (354)
T ss_pred             HHHHHhhhhhhhhhccc
Confidence            78999999999999874

>KOG3802|consensus

Probab=95.51  E-value=0.0056  Score=46.94  Aligned_cols=18  Identities=39%  Similarity=0.623  Sum_probs=15.9

Q ss_pred             CccccCchhHHHHHhhhc
Q psy9533           1 MSFVWFQNRRAKWRKKEH   18 (73)
Q Consensus         1 ~VKIWFQNRRaKwKKq~~   18 (73)
                      .|.|||=|||=|.||...
T Consensus       337 VVRVWFCNRRQkeKR~~~  354 (398)
T KOG3802|consen  337 VVRVWFCNRRQKEKRITP  354 (398)
T ss_pred             eEEEEeeccccccccCCC
Confidence            489999999999998765

>KOG0490|consensus

Probab=94.34  E-value=0.05  Score=36.76  Aligned_cols=17  Identities=65%  Similarity=1.005  Sum_probs=15.0

Q ss_pred             ccccCchhHHHHHhhhc
Q psy9533           2 SFVWFQNRRAKWRKKEH   18 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~   18 (73)
                      |.|||||+|++.++...
T Consensus       197 ~q~~~~~~~~~~~~~~~  213 (235)
T KOG0490|consen  197 IQVWFQNRRAKLRKHKR  213 (235)
T ss_pred             hhhhcccHHHHHHhhcc
Confidence            78999999999998655

>KOG0775|consensus

Probab=83.85  E-value=0.97  Score=33.71  Aligned_cols=14  Identities=43%  Similarity=0.750  Sum_probs=11.7

Q ss_pred             ccccCchhHHHHHh
Q psy9533           2 SFVWFQNRRAKWRK   15 (73)
Q Consensus         2 VKIWFQNRRaKwKK   15 (73)
                      |-.||.|||-..|-
T Consensus       220 VsNWFKNRRQRDRa  233 (304)
T KOG0775|consen  220 VSNWFKNRRQRDRA  233 (304)
T ss_pred             hhhhhhhhhhhhhh
Confidence            56799999988883

>KOG1168|consensus

Probab=80.04  E-value=0.68  Score=35.06  Aligned_cols=18  Identities=33%  Similarity=0.661  Sum_probs=15.0

Q ss_pred             CccccCchhHHHHHhhhc
Q psy9533           1 MSFVWFQNRRAKWRKKEH   18 (73)
Q Consensus         1 ~VKIWFQNRRaKwKKq~~   18 (73)
                      .|.|||=|-|-|.||...
T Consensus       352 VVRVWFCNQRQKQKRm~~  369 (385)
T KOG1168|consen  352 VVRVWFCNQRQKQKRMKR  369 (385)
T ss_pred             eEEEEeeccHHHHHHhhh
Confidence            489999999999988543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	73
2dms_A	80	Homeobox protein OTX2; homeobox domain, three heli	6e-08
2cue_A	80	Paired box protein PAX6; homeobox domain, transcri	8e-08
2dmq_A	80	LIM/homeobox protein LHX9; homeobox domain, three	3e-07
3a02_A	60	Homeobox protein aristaless; homeodomain, developm	1e-06
1uhs_A	72	HOP, homeodomain only protein; structural genomics	5e-06
1fjl_A	81	Paired protein; DNA-binding protein, paired BOX, t	5e-06
2k40_A	67	Homeobox expressed in ES cells 1; thermostable hom	1e-05
1yz8_P	68	Pituitary homeobox 2; DNA binding protein, transcr	1e-05
2hi3_A	73	Homeodomain-only protein; transcription; NMR {Mus	1e-05
2dmu_A	70	Homeobox protein goosecoid; homeobox domain, three	2e-05
2dn0_A	76	Zinc fingers and homeoboxes protein 3; triple home	4e-05
2da2_A	70	Alpha-fetoprotein enhancer binding protein; homeob	6e-05
1bw5_A	66	ISL-1HD, insulin gene enhancer protein ISL-1; DNA-	7e-05
2da3_A	80	Alpha-fetoprotein enhancer binding protein; homeob	3e-04
2da1_A	70	Alpha-fetoprotein enhancer binding protein; homeob	5e-04

>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Length = 80

 Score = 43.9 bits (104), Expect = 6e-08
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 4  VWFQNRRAKWRKKEHTKKGPGRPAHNA 30
          VWF+NRRAK R+++  ++  G+   ++
Sbjct: 53 VWFKNRRAKCRQQQQQQQNGGQSGPSS 79

>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 80

 Score = 43.5 bits (103), Expect = 8e-08
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 4  VWFQNRRAKWRKKEHTKKGPGRPAHNA 30
          VWF NRRAKWR++E  +    +   ++
Sbjct: 53 VWFSNRRAKWRREEKLRNQRRQSGPSS 79

>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 42.1 bits (99), Expect = 3e-07
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 4  VWFQNRRAKWRKKEHTKKGPGRPAHNA 30
          VWFQN RAK+R+    ++  G    ++
Sbjct: 53 VWFQNARAKFRRNLLRQENGGVSGPSS 79

>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Length = 60

 Score = 39.9 bits (94), Expect = 1e-06
 Identities = 13/14 (92%), Positives = 14/14 (100%)

Query: 4  VWFQNRRAKWRKKE 17
          VWFQNRRAKWRK+E
Sbjct: 45 VWFQNRRAKWRKQE 58

>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72

 Score = 38.9 bits (91), Expect = 5e-06
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 4  VWFQNRRAKWRKKE 17
           WF+ R A+WR+ E
Sbjct: 48 KWFKQRLAEWRRSE 61

>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Length = 81

 Score = 39.3 bits (92), Expect = 5e-06
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 4  VWFQNRRAKWRKKEHT 19
          VWFQNRRA+ RK+  +
Sbjct: 64 VWFQNRRARLRKQHTS 79

>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Length = 67

 Score = 38.1 bits (89), Expect = 1e-05
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 4  VWFQNRRAKWRKKEHTKK 21
          +WFQNRRAK ++     +
Sbjct: 47 IWFQNRRAKLKRSHRESQ 64

>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Length = 68

 Score = 38.1 bits (89), Expect = 1e-05
 Identities = 12/14 (85%), Positives = 14/14 (100%)

Query: 4  VWFQNRRAKWRKKE 17
          VWF+NRRAKWRK+E
Sbjct: 49 VWFKNRRAKWRKRE 62

>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Length = 73

 Score = 38.2 bits (89), Expect = 1e-05
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 4  VWFQNRRAKWRKKEHTKKGPG 24
           WF+ R A+WR+ E       
Sbjct: 49 KWFKQRLAEWRRSEGLPSECR 69

>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 37.3 bits (87), Expect = 2e-05
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 4  VWFQNRRAKWRKKEHT 19
          VWF+NRRAKWR+   +
Sbjct: 53 VWFKNRRAKWRRSGPS 68

>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76

 Score = 36.6 bits (85), Expect = 4e-05
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 4  VWFQNRRAKWRKKEHTKKGPG 24
           WF +RR   R  + ++ GP 
Sbjct: 54 KWFSDRRYHCRNLKGSRSGPS 74

>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 36.2 bits (84), Expect = 6e-05
 Identities = 9/14 (64%), Positives = 9/14 (64%)

Query: 4  VWFQNRRAKWRKKE 17
          VWFQN R K RK  
Sbjct: 53 VWFQNARQKARKSG 66

>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Length = 66

 Score = 35.8 bits (83), Expect = 7e-05
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 4  VWFQNRRAKWRKKEHTKK 21
          VWFQN+R K +K+    K
Sbjct: 49 VWFQNKRCKDKKRSIMMK 66

>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 80

 Score = 34.8 bits (80), Expect = 3e-04
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 4  VWFQNRRAKWRKKE 17
          VWFQN RA+ RK  
Sbjct: 63 VWFQNTRARERKSG 76

>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 33.9 bits (78), Expect = 5e-04
 Identities = 5/14 (35%), Positives = 7/14 (50%)

Query: 4  VWFQNRRAKWRKKE 17
           WF+N   K R+  
Sbjct: 53 HWFRNTLFKERQSG 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	73
2nzz_A	37	Penetratin conjugated GAS (374-394) peptide; confo	99.42
2ecb_A	89	Zinc fingers and homeoboxes protein 1; homeobox do	99.19
2dms_A	80	Homeobox protein OTX2; homeobox domain, three heli	99.03
1ahd_P	68	Antennapedia protein mutant; DNA binding protein/D	99.03
2dmq_A	80	LIM/homeobox protein LHX9; homeobox domain, three	98.99
1nk2_P	77	Homeobox protein VND; homeodomain, DNA-binding pro	98.97
2dmp_A	89	Zinc fingers and homeoboxes protein 2; homeobox do	98.97
1uhs_A	72	HOP, homeodomain only protein; structural genomics	98.96
2hi3_A	73	Homeodomain-only protein; transcription; NMR {Mus	98.95
2cue_A	80	Paired box protein PAX6; homeobox domain, transcri	98.92
2da5_A	75	Zinc fingers and homeoboxes protein 3; homeobox do	98.92
2l9r_A	69	Homeobox protein NKX-3.1; structural genomics, nor	98.9
1yz8_P	68	Pituitary homeobox 2; DNA binding protein, transcr	98.89
3a01_A	93	Homeodomain-containing protein; homeodomain, prote	98.89
2cuf_A	95	FLJ21616 protein; homeobox domain, hepatocyte tran	98.88
1ftt_A	68	TTF-1 HD, thyroid transcription factor 1 homeodoma	98.87
2da4_A	80	Hypothetical protein DKFZP686K21156; homeobox doma	98.86
1zq3_P	68	PRD-4, homeotic bicoid protein; protein-DNA comple	98.86
2ly9_A	74	Zinc fingers and homeoboxes protein 1; structural	98.85
2dn0_A	76	Zinc fingers and homeoboxes protein 3; triple home	98.83
1b72_B	87	Protein (PBX1); homeodomain, DNA, complex, DNA-bin	98.75
2ecc_A	76	Homeobox and leucine zipper protein homez; homeobo	98.74
2k40_A	67	Homeobox expressed in ES cells 1; thermostable hom	98.74
3nar_A	96	ZHX1, zinc fingers and homeoboxes protein 1; corep	98.72
1puf_B	73	PRE-B-cell leukemia transcription factor-1; homeod	98.67
2dmn_A	83	Homeobox protein TGIF2LX; TGFB-induced factor 2-li	98.63
1le8_B	83	Mating-type protein alpha-2; matalpha2, isothermal	98.6
2da6_A	102	Hepatocyte nuclear factor 1-beta; homeobox domain,	98.58
3k2a_A	67	Homeobox protein MEIS2; homeobox domain, DNA-bindi	98.46
1lfb_A	99	Liver transcription factor (LFB1); transcription r	98.36
2d5v_A	164	Hepatocyte nuclear factor 6; transcription factor,	98.33
2lk2_A	89	Homeobox protein TGIF1; NESG, structural genomics,	98.11
2da7_A	71	Zinc finger homeobox protein 1B; homeobox domain,	97.84

>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A

Probab=99.42  E-value=1.6e-14  Score=76.54  Aligned_cols=18  Identities=50%  Similarity=1.090  Sum_probs=16.3

Q ss_pred             ccccCchhHHHHHhhhcC
Q psy9533           2 SFVWFQNRRAKWRKKEHT   19 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~   19 (73)
                      ||||||||||||||....
T Consensus         3 VkIWFQNRRaK~Kk~~~~   20 (37)
T 2nzz_A            3 IKIWFQNRRMKWKKRVFN   20 (37)
T ss_dssp             TTTTTTCSHHHHTSSHHH
T ss_pred             ceeccHHHHHHHHHHhHH
Confidence            899999999999998664

>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.19  E-value=4.4e-12  Score=77.78  Aligned_cols=20  Identities=20%  Similarity=0.366  Sum_probs=17.1

Q ss_pred             ccccCchhHHHHHhhhcCCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTKK   21 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~~   21 (73)
                      |+||||||||||||.++...
T Consensus        55 VkvWFqNRR~k~rk~~~~~~   74 (89)
T 2ecb_A           55 IDAWFTEKKKSKALKEEKME   74 (89)
T ss_dssp             HHHHHHHHHHHHHSCCSCCC
T ss_pred             CeecccccchHHHHHHHHhh
Confidence            89999999999998766554

>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.03  E-value=4.4e-11  Score=70.72  Aligned_cols=20  Identities=45%  Similarity=0.898  Sum_probs=17.1

Q ss_pred             ccccCchhHHHHHhhhcCCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTKK   21 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~~   21 (73)
                      |+||||||||||||..+...
T Consensus        51 V~~WFqNRR~k~rk~~~~~~   70 (80)
T 2dms_A           51 VQVWFKNRRAKCRQQQQQQQ   70 (80)
T ss_dssp             HHHHHHHHHTHHHHTTCSCC
T ss_pred             hhhhhHHHhHHhhHHHHccC
Confidence            89999999999999766443

>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A

Probab=99.03  E-value=3.2e-11  Score=69.58  Aligned_cols=21  Identities=52%  Similarity=1.018  Sum_probs=17.8

Q ss_pred             ccccCchhHHHHHhhhcCCCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTKKG   22 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~~~   22 (73)
                      |+||||||||||||..+....
T Consensus        46 V~vWFqNRR~k~kk~~~~~~~   66 (68)
T 1ahd_P           46 IKIWFQNRRMKWKKENKTKGE   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHSCCCSS
T ss_pred             hhHHhHHHHhHHhHhccccCC
Confidence            899999999999998765543

>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=9.3e-11  Score=69.10  Aligned_cols=20  Identities=45%  Similarity=0.762  Sum_probs=17.1

Q ss_pred             ccccCchhHHHHHhhhcCCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTKK   21 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~~   21 (73)
                      |+|||||||+||||......
T Consensus        51 V~~WFqNrR~k~kk~~~~~~   70 (80)
T 2dmq_A           51 LQVWFQNARAKFRRNLLRQE   70 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHSSC
T ss_pred             hhHccHHHHHHHHHHHHHHh
Confidence            89999999999999866443

>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A

Probab=98.97  E-value=6.9e-11  Score=69.52  Aligned_cols=23  Identities=35%  Similarity=0.599  Sum_probs=18.7

Q ss_pred             ccccCchhHHHHHhhhcCCCCCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTKKGPG   24 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~~~~~   24 (73)
                      |+|||||||+|+||........+
T Consensus        53 V~~WFqNRR~k~kr~~~~~~~~~   75 (77)
T 1nk2_P           53 VKIWFQNHRYKTKRAQNEKGYEG   75 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHhHHhhcchhhhhccccCCC
Confidence            89999999999999876555443

>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=1.2e-10  Score=70.59  Aligned_cols=20  Identities=25%  Similarity=0.340  Sum_probs=17.0

Q ss_pred             ccccCchhHHHHHhhhcCCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTKK   21 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~~   21 (73)
                      |+|||||||+|||+.++...
T Consensus        57 V~vWFqNRR~k~r~~~~~~~   76 (89)
T 2dmp_A           57 IDSWFSERRKLRDSMEQAVL   76 (89)
T ss_dssp             HHHHHHHHHHHHHTSCSCCC
T ss_pred             ccHhhHhHHHHHHHHhHhhh
Confidence            89999999999999766543

>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.96  E-value=1.2e-10  Score=67.65  Aligned_cols=18  Identities=39%  Similarity=0.913  Sum_probs=16.0

Q ss_pred             ccccCchhHHHHHhhhcC
Q psy9533           2 SFVWFQNRRAKWRKKEHT   19 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~   19 (73)
                      |+||||||||||||..+.
T Consensus        46 V~~WFqNRR~k~rk~~~~   63 (72)
T 1uhs_A           46 TQKWFKQRLAEWRRSEGL   63 (72)
T ss_dssp             HHHHHHHHHHHHHHHHCC
T ss_pred             hhHHhHHHHHHHhhhccC
Confidence            899999999999997743

>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.95  E-value=1.3e-10  Score=67.72  Aligned_cols=18  Identities=39%  Similarity=0.913  Sum_probs=16.1

Q ss_pred             ccccCchhHHHHHhhhcC
Q psy9533           2 SFVWFQNRRAKWRKKEHT   19 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~   19 (73)
                      |+||||||||||||..+.
T Consensus        47 V~~WFqNRR~k~rk~~~~   64 (73)
T 2hi3_A           47 TQKWFKQRLAEWRRSEGL   64 (73)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhccC
Confidence            899999999999998753

>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.92  E-value=3.9e-11  Score=71.05  Aligned_cols=19  Identities=58%  Similarity=1.185  Sum_probs=16.7

Q ss_pred             ccccCchhHHHHHhhhcCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTK   20 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~   20 (73)
                      |+||||||||||||..+..
T Consensus        51 V~vWFqNRR~k~kk~~~~~   69 (80)
T 2cue_A           51 IQVWFSNRRAKWRREEKLR   69 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhh
Confidence            8999999999999986644

>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=1.3e-10  Score=68.23  Aligned_cols=20  Identities=35%  Similarity=0.541  Sum_probs=16.9

Q ss_pred             ccccCchhHHHHHhhhcCCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTKK   21 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~~   21 (73)
                      |+||||||||||||..+...
T Consensus        51 V~~WFqNRR~k~kk~~~~~~   70 (75)
T 2da5_A           51 IDSWFSERRKKVNAEETKKS   70 (75)
T ss_dssp             HHHHHHHHTTHHHHSSCSSC
T ss_pred             hhHhhHHHHHHHHHhhhccc
Confidence            89999999999999765443

>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.90  E-value=7.8e-11  Score=69.04  Aligned_cols=17  Identities=47%  Similarity=0.819  Sum_probs=15.2

Q ss_pred             ccccCchhHHHHHhhhc
Q psy9533           2 SFVWFQNRRAKWRKKEH   18 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~   18 (73)
                      |+|||||||+||||...
T Consensus        48 VqvWFqNRRak~kr~~~   64 (69)
T 2l9r_A           48 VKIWFQNRRYKTKRKQL   64 (69)
T ss_dssp             HHHHHHHHHHHSCCSSS
T ss_pred             eeecchhhhhhhhhhhh
Confidence            89999999999998654

>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P

Probab=98.89  E-value=2.1e-10  Score=65.88  Aligned_cols=18  Identities=67%  Similarity=1.245  Sum_probs=16.1

Q ss_pred             ccccCchhHHHHHhhhcC
Q psy9533           2 SFVWFQNRRAKWRKKEHT   19 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~   19 (73)
                      |+|||||||+||||..+.
T Consensus        47 V~~WFqNrR~k~rk~~~~   64 (68)
T 1yz8_P           47 VRVWFKNRRAKWRKREEF   64 (68)
T ss_dssp             HHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhHHHHHHhhc
Confidence            899999999999997664

>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}

Probab=98.89  E-value=1.9e-10  Score=70.07  Aligned_cols=20  Identities=45%  Similarity=1.042  Sum_probs=16.8

Q ss_pred             ccccCchhHHHHHhhhcCCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTKK   21 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~~   21 (73)
                      |+|||||||+||||......
T Consensus        61 V~vWFqNRR~k~kr~~~~~~   80 (93)
T 3a01_A           61 VKTWFQNRRTKWRRQTAEER   80 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-
T ss_pred             cccccHhhhhhhhhhhHHHH
Confidence            89999999999999866543

>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.88  E-value=4e-10  Score=68.59  Aligned_cols=19  Identities=26%  Similarity=0.761  Sum_probs=16.8

Q ss_pred             ccccCchhHHHHHhhhcCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTK   20 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~   20 (73)
                      |+|||||||+||||..+..
T Consensus        66 V~~WFqNRR~k~kr~~~~~   84 (95)
T 2cuf_A           66 VYNWFANRRKEIKRRANIA   84 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhhcc
Confidence            8999999999999987653

>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1

Probab=98.87  E-value=2.4e-10  Score=65.80  Aligned_cols=19  Identities=37%  Similarity=0.746  Sum_probs=16.6

Q ss_pred             ccccCchhHHHHHhhhcCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTK   20 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~   20 (73)
                      |+|||||||+||||..+..
T Consensus        46 V~~WFqNRR~k~kr~~~~~   64 (68)
T 1ftt_A           46 VKIWFQNHRYKMKRQAKDK   64 (68)
T ss_dssp             HHHHHHHHHHHHHHTTSCC
T ss_pred             hHHHhHHHhhhhhhhhhHh
Confidence            8999999999999976643

>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=3.9e-10  Score=66.58  Aligned_cols=16  Identities=38%  Similarity=0.632  Sum_probs=14.5

Q ss_pred             ccccCchhHHHHHhhh
Q psy9533           2 SFVWFQNRRAKWRKKE   17 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~   17 (73)
                      |+|||||||+||||..
T Consensus        56 V~vWFqNrR~k~rk~~   71 (80)
T 2da4_A           56 VRTWIGNRRRKYRLMG   71 (80)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             hhHhHHHHHHHHhhcc
Confidence            8999999999999953

>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1

Probab=98.86  E-value=3.2e-10  Score=65.22  Aligned_cols=19  Identities=26%  Similarity=0.690  Sum_probs=16.6

Q ss_pred             ccccCchhHHHHHhhhcCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTK   20 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~   20 (73)
                      |+|||||||+||||.....
T Consensus        46 V~~WFqNRR~k~kk~~~~~   64 (68)
T 1zq3_P           46 VKIWFKNRRRRHKIQSDQH   64 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHTT
T ss_pred             hhHhhHHHHHHHHHHhccc
Confidence            8999999999999986644

>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.85  E-value=3.2e-10  Score=65.90  Aligned_cols=18  Identities=22%  Similarity=0.451  Sum_probs=15.8

Q ss_pred             ccccCchhHHHHHhhhcC
Q psy9533           2 SFVWFQNRRAKWRKKEHT   19 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~   19 (73)
                      |+|||||||+||||....
T Consensus        50 V~~WFqNrR~k~kk~~~~   67 (74)
T 2ly9_A           50 IKKWFSDTRYNQRNSKSN   67 (74)
T ss_dssp             HHHHHHHHHHHTTTTTCS
T ss_pred             eeeCChhHhHHHHhhCcC
Confidence            899999999999997553

>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=2.8e-10  Score=66.71  Aligned_cols=19  Identities=26%  Similarity=0.560  Sum_probs=16.2

Q ss_pred             ccccCchhHHHHHhhhcCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTK   20 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~   20 (73)
                      |+|||||||+||||..+..
T Consensus        52 V~~WFqNrR~k~kk~~~~~   70 (76)
T 2dn0_A           52 VRKWFSDRRYHCRNLKGSR   70 (76)
T ss_dssp             HHHHHHHHHHHSSSCCSSS
T ss_pred             hhHHhHHHhHHHHHhcccC
Confidence            8999999999999965543

>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P

Probab=98.75  E-value=1.6e-10  Score=68.98  Aligned_cols=19  Identities=26%  Similarity=0.541  Sum_probs=16.3

Q ss_pred             ccccCchhHHHHHhhhcCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTK   20 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~   20 (73)
                      |+|||||||+||||.....
T Consensus        48 V~~WFqNrR~r~kk~~~~~   66 (87)
T 1b72_B           48 VSNWFGNKRIRYKKNIGKF   66 (87)
T ss_dssp             HHHHHHHHHHHHHHCGGGG
T ss_pred             HHHHHHHHHHHhhhccccc
Confidence            8999999999999976543

>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.74  E-value=8.2e-10  Score=66.11  Aligned_cols=17  Identities=18%  Similarity=0.458  Sum_probs=15.0

Q ss_pred             ccccCchhHHHHHhhhc
Q psy9533           2 SFVWFQNRRAKWRKKEH   18 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~   18 (73)
                      |+||||||||||||..-
T Consensus        47 IkvWFqNrR~k~Kk~~l   63 (76)
T 2ecc_A           47 IIQWFGDTRYALKHGQL   63 (76)
T ss_dssp             HHHHHHHHHHHHHHTCC
T ss_pred             hhHHhHhhHHHHHHHHH
Confidence            89999999999999643

>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}

Probab=98.74  E-value=8.6e-10  Score=63.07  Aligned_cols=17  Identities=47%  Similarity=0.925  Sum_probs=15.2

Q ss_pred             ccccCchhHHHHHhhhc
Q psy9533           2 SFVWFQNRRAKWRKKEH   18 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~   18 (73)
                      |+|||||||+||||..+
T Consensus        45 V~~WFqNrR~k~kr~~~   61 (67)
T 2k40_A           45 IQIWFQNRRAKLKRSHR   61 (67)
T ss_dssp             HHHHHHHHHHHHHCSCC
T ss_pred             hhHhhHhHHHHHhHhch
Confidence            89999999999998654

>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}

Probab=98.72  E-value=9.3e-10  Score=67.17  Aligned_cols=15  Identities=27%  Similarity=0.849  Sum_probs=14.2

Q ss_pred             ccccCchhHHHHHhh
Q psy9533           2 SFVWFQNRRAKWRKK   16 (73)
Q Consensus         2 VKIWFQNRRaKwKKq   16 (73)
                      |+|||||||+||||.
T Consensus        69 V~vWFqNRR~k~kk~   83 (96)
T 3nar_A           69 IVSWFGDTRYAWKNG   83 (96)
T ss_dssp             HHHHHHHHHHHHTTT
T ss_pred             eeecchhhhhHhhhh
Confidence            899999999999985

>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*

Probab=98.67  E-value=2.3e-09  Score=62.14  Aligned_cols=18  Identities=28%  Similarity=0.632  Sum_probs=15.5

Q ss_pred             ccccCchhHHHHHhhhcC
Q psy9533           2 SFVWFQNRRAKWRKKEHT   19 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~   19 (73)
                      |+|||||||+||||....
T Consensus        48 V~~WFqNrR~r~kk~~~~   65 (73)
T 1puf_B           48 VSNWFGNKRIRYKKNIGK   65 (73)
T ss_dssp             HHHHHHHHHHHHHHCTTT
T ss_pred             HHHHHHHHHhhccccccc
Confidence            899999999999986543

>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}

Probab=98.63  E-value=6.9e-09  Score=61.94  Aligned_cols=18  Identities=22%  Similarity=0.270  Sum_probs=15.5

Q ss_pred             ccccCchhHHHHHhhhcC
Q psy9533           2 SFVWFQNRRAKWRKKEHT   19 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~   19 (73)
                      |+|||||||+|+++....
T Consensus        54 V~~WFqNrR~r~k~~~~~   71 (83)
T 2dmn_A           54 ISNWFINARRRILPDMLQ   71 (83)
T ss_dssp             HHHHHHHHHHHTHHHHTC
T ss_pred             hhHHhhhhHhhhcHHHHH
Confidence            899999999999986543

>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*

Probab=98.60  E-value=3.6e-09  Score=63.02  Aligned_cols=16  Identities=31%  Similarity=0.372  Sum_probs=14.4

Q ss_pred             ccccCchhHHHHHhhh
Q psy9533           2 SFVWFQNRRAKWRKKE   17 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~   17 (73)
                      |+|||||||+|||+..
T Consensus        49 V~~WFqNrR~r~kk~~   64 (83)
T 1le8_B           49 IKNWVAARRAKEKTIT   64 (83)
T ss_dssp             HHHHHHHHHHHHTTSC
T ss_pred             cccccHHHHccccccc
Confidence            8999999999999853

>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=5.4e-09  Score=65.64  Aligned_cols=19  Identities=26%  Similarity=0.562  Sum_probs=16.1

Q ss_pred             ccccCchhHHHHHhhhcCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTK   20 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~   20 (73)
                      |+|||||||+|||+..+..
T Consensus        71 V~~WFqNRR~k~kr~~~~~   89 (102)
T 2da6_A           71 VYNWFANRRKEEAFRQKLA   89 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeecchHHHHHHhhHhh
Confidence            7999999999999875543

>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1

Probab=98.46  E-value=1.5e-08  Score=58.42  Aligned_cols=16  Identities=25%  Similarity=0.378  Sum_probs=14.4

Q ss_pred             ccccCchhHHHHHhhh
Q psy9533           2 SFVWFQNRRAKWRKKE   17 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~   17 (73)
                      |+|||||||+|+||..
T Consensus        45 V~~WFqNrR~r~kk~~   60 (67)
T 3k2a_A           45 VNNWFINARRRIVQPM   60 (67)
T ss_dssp             HHHHHHHHHHHHHSCC
T ss_pred             hhhhhHHHHHHHhHHH
Confidence            8999999999999853

>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A

Probab=98.36  E-value=1.9e-08  Score=62.39  Aligned_cols=16  Identities=31%  Similarity=0.663  Sum_probs=13.8

Q ss_pred             ccccCchhHHHHHhhh
Q psy9533           2 SFVWFQNRRAKWRKKE   17 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~   17 (73)
                      |+|||||||||+++..
T Consensus        74 V~vWFqNRR~k~k~k~   89 (99)
T 1lfb_A           74 VYNWFANRRKEEAFRH   89 (99)
T ss_dssp             HHHHHHHHHHTTSCCC
T ss_pred             eeeccHHHHHHHHHhc
Confidence            8999999999997643

>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A

Probab=98.33  E-value=2.3e-08  Score=65.59  Aligned_cols=17  Identities=24%  Similarity=0.112  Sum_probs=14.0

Q ss_pred             ccccCchhHHHHHhhhc
Q psy9533           2 SFVWFQNRRAKWRKKEH   18 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~   18 (73)
                      |+|||||||||+||...
T Consensus       141 V~~WFqNrR~r~k~~~~  157 (164)
T 2d5v_A          141 VSNFFMNARRRSLDKWL  157 (164)
T ss_dssp             HHHHHHHHHHTSSCC--
T ss_pred             hhhcChhhhccccccCC
Confidence            89999999999998543

>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}

Probab=98.11  E-value=4.9e-07  Score=55.44  Aligned_cols=17  Identities=24%  Similarity=0.362  Sum_probs=14.8

Q ss_pred             ccccCchhHHHHHhhhc
Q psy9533           2 SFVWFQNRRAKWRKKEH   18 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~   18 (73)
                      |++||||||+|+++...
T Consensus        52 V~~WF~NrR~R~kk~~~   68 (89)
T 2lk2_A           52 VCNWFINARRRLLPDML   68 (89)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHH
Confidence            79999999999998643

>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.84  E-value=1.6e-06  Score=51.45  Aligned_cols=11  Identities=27%  Similarity=0.691  Sum_probs=9.9

Q ss_pred             ccccCchhHHH
Q psy9533           2 SFVWFQNRRAK   12 (73)
Q Consensus         2 VKIWFQNRRaK   12 (73)
                      |+|||||||+.
T Consensus        49 VrVWFqNrRa~   59 (71)
T 2da7_A           49 VKEWFEQRKVY   59 (71)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHhhcccc
Confidence            89999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	73
d1vnda_	77	a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophi	3e-04
d9anta_	56	a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila	0.001
d1jgga_	57	a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (	0.003
d1pufa_	77	a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus m	0.004
d2cuea1	68	a.4.1.1 (A:7-74) Paired box protein pax6 {Human (H	0.004
d1uhsa_	72	a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse	0.004

>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 77

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: VND/NK-2 protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 33.5 bits (76), Expect = 3e-04
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 4  VWFQNRRAKWRKKEHTKKGPGRP 26
          +WFQN R K ++ ++ K   G P
Sbjct: 55 IWFQNHRYKTKRAQNEKGYEGHP 77

>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Antennapedia Homeodomain
species: Drosophila melanogaster [TaxId: 7227]

 Score = 31.3 bits (71), Expect = 0.001
 Identities = 9/13 (69%), Positives = 12/13 (92%)

Query: 4  VWFQNRRAKWRKK 16
          +WFQNRR KW+K+
Sbjct: 43 IWFQNRRMKWKKE 55

>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Even-skipped homeodomain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 30.3 bits (68), Expect = 0.003
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 4  VWFQNRRAKWRKK 16
          VWFQNRR K +++
Sbjct: 45 VWFQNRRMKDKRQ 57

>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein hox-a9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 30.6 bits (69), Expect = 0.004
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 4  VWFQNRRAKWRKKEHTK 20
          +WFQNRR K +K    +
Sbjct: 59 IWFQNRRMKMKKINKDR 75

>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Paired box protein pax6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.1 bits (68), Expect = 0.004
 Identities = 11/17 (64%), Positives = 14/17 (82%)

Query: 4  VWFQNRRAKWRKKEHTK 20
          VWF NRRAKWR++E  +
Sbjct: 47 VWFSNRRAKWRREEKLR 63

>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeodomain-only protein, Hop
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 30.3 bits (68), Expect = 0.004
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 3  FVWFQNRRAKWRKKEHTKKGPG 24
            WF+ R A+WR+ E       
Sbjct: 47 QKWFKQRLAEWRRSEGLPSECR 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	73
d1uhsa_	72	Homeodomain-only protein, Hop {Mouse (Mus musculus	98.95
d1zq3p1	67	Homeotic bicoid protein {Fruit fly (Drosophila mel	98.91
d1vnda_	77	VND/NK-2 protein {Fruit fly (Drosophila melanogast	98.8
d2cufa1	82	Homeobox-containing protein 1, HMBOX1 (Flj21616) {	98.73
d1ftta_	68	Thyroid transcription factor 1 homeodomain {Rat (R	98.68
d2ecba1	76	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	98.61
d2ecca1	76	Homeobox-leucine zipper protein Homez {Human (Homo	98.57
d2cuea1	68	Paired box protein pax6 {Human (Homo sapiens) [Tax	98.57
d1pufb_	73	pbx1 {Human (Homo sapiens) [TaxId: 9606]}	98.1

>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeodomain-only protein, Hop
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=5.9e-11  Score=68.91  Aligned_cols=17  Identities=41%  Similarity=0.991  Sum_probs=15.4

Q ss_pred             ccccCchhHHHHHhhhc
Q psy9533           2 SFVWFQNRRAKWRKKEH   18 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~   18 (73)
                      |+||||||||||||...
T Consensus        46 VqvWFqNrRak~rk~~~   62 (72)
T d1uhsa_          46 TQKWFKQRLAEWRRSEG   62 (72)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccC
Confidence            89999999999999754

>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeotic bicoid protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.91  E-value=7.6e-11  Score=67.33  Aligned_cols=18  Identities=28%  Similarity=0.717  Sum_probs=15.8

Q ss_pred             ccccCchhHHHHHhhhcC
Q psy9533           2 SFVWFQNRRAKWRKKEHT   19 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~   19 (73)
                      |+|||||||+|+||+...
T Consensus        45 V~iWFqNrR~k~kk~~~~   62 (67)
T d1zq3p1          45 VKIWFKNRRRRHKIQSDQ   62 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             eeeccccHHHhHhhhhhh
Confidence            899999999999987543

>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: VND/NK-2 protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.80  E-value=8.3e-11  Score=68.82  Aligned_cols=20  Identities=35%  Similarity=0.654  Sum_probs=16.3

Q ss_pred             ccccCchhHHHHHhhhcCCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTKK   21 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~~   21 (73)
                      |+|||||||+|+||......
T Consensus        53 V~~WFqNrR~k~kr~~~~~~   72 (77)
T d1vnda_          53 VKIWFQNHRYKTKRAQNEKG   72 (77)
T ss_dssp             HHHHHHHSSSSCSSSCCCSS
T ss_pred             hhhcchhHHHHHHHHhhccC
Confidence            89999999999998654443

>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox-containing protein 1, HMBOX1 (Flj21616)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=7.8e-10  Score=65.04  Aligned_cols=19  Identities=26%  Similarity=0.761  Sum_probs=16.3

Q ss_pred             ccccCchhHHHHHhhhcCC
Q psy9533           2 SFVWFQNRRAKWRKKEHTK   20 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~~   20 (73)
                      |+|||||||+|+||.....
T Consensus        59 V~vWFqNRR~k~kk~~~~a   77 (82)
T d2cufa1          59 VYNWFANRRKEIKRRANIA   77 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhhhHHHHHHhhhHH
Confidence            8999999999999976543

>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Thyroid transcription factor 1 homeodomain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=1.2e-09  Score=62.40  Aligned_cols=17  Identities=35%  Similarity=0.771  Sum_probs=15.1

Q ss_pred             ccccCchhHHHHHhhhc
Q psy9533           2 SFVWFQNRRAKWRKKEH   18 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~   18 (73)
                      |+|||||||+|+||...
T Consensus        46 V~~WFqNrR~k~kk~~~   62 (68)
T d1ftta_          46 VKIWFQNHRYKMKRQAK   62 (68)
T ss_dssp             HHHHHHHHHHHHHHTTS
T ss_pred             eeeecccHHHHHhhccc
Confidence            89999999999998644

>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Zinc fingers and homeoboxes protein 1, ZHX1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=3.2e-09  Score=61.49  Aligned_cols=18  Identities=22%  Similarity=0.411  Sum_probs=15.0

Q ss_pred             ccccCchhHHHHHhhhcC
Q psy9533           2 SFVWFQNRRAKWRKKEHT   19 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~~   19 (73)
                      |+|||||||+|.|+....
T Consensus        48 V~~WFqNrR~r~k~~~~~   65 (76)
T d2ecba1          48 IDAWFTEKKKSKALKEEK   65 (76)
T ss_dssp             HHHHHHHHHHHHHSCCSC
T ss_pred             HHHhHHHHHHHHHHHhHh
Confidence            899999999998875443

>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox-leucine zipper protein Homez
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=6.1e-09  Score=60.21  Aligned_cols=16  Identities=19%  Similarity=0.526  Sum_probs=14.4

Q ss_pred             ccccCchhHHHHHhhh
Q psy9533           2 SFVWFQNRRAKWRKKE   17 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~   17 (73)
                      |+|||||||+|+|+..
T Consensus        47 V~~WF~NrR~k~k~~~   62 (76)
T d2ecca1          47 IIQWFGDTRYALKHGQ   62 (76)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhch
Confidence            8999999999999853

>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Paired box protein pax6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.7e-09  Score=60.87  Aligned_cols=17  Identities=65%  Similarity=1.296  Sum_probs=15.2

Q ss_pred             ccccCchhHHHHHhhhc
Q psy9533           2 SFVWFQNRRAKWRKKEH   18 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~~   18 (73)
                      |+|||||||+|+|+..+
T Consensus        45 V~~WFqNrR~k~kr~~~   61 (68)
T d2cuea1          45 IQVWFSNRRAKWRREEK   61 (68)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             eeecCcchhHHHHhhhh
Confidence            89999999999998654

>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: pbx1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.5e-07  Score=53.74  Aligned_cols=16  Identities=31%  Similarity=0.738  Sum_probs=14.2

Q ss_pred             ccccCchhHHHHHhhh
Q psy9533           2 SFVWFQNRRAKWRKKE   17 (73)
Q Consensus         2 VKIWFQNRRaKwKKq~   17 (73)
                      |+|||||||+|+|+..
T Consensus        48 v~~WF~N~R~r~k~~~   63 (73)
T d1pufb_          48 VSNWFGNKRIRYKKNI   63 (73)
T ss_dssp             HHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHhcccc
Confidence            7899999999999843