Psyllid ID: psy953

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDRIGESQPFRERTLSVEDPRTLWSPYSNLSGT
cccccccccccHHHHHHHcccccEEEEcccccccccccccccccHHHHHHHHHHHHHHcccEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEEccccHHHHHHHHccccHHHHHHccccccEEEEEcccccccccccccccccc
cccEccccccHHHHccccccccccccccccccccccccccccccccHHHHccHHHccHHHcEEEEEccEcccccccccccEEEccccccEEEccHHHHHHHHHHHHcccEEEccHHHHHHHHHHHHHHHccHcHHHHHHHHHHHccccccccEEEccccccccc
avkispghdhndyevAQRLnlplitvfneegviigdygeftgmkrfdarTRVTEVLTEKGLYRGTVSHAMVVPlcsrskdvvepllkpqwyvrTGEMAEKAVQAVKTgelkiipdhhTKTWYQWLENNREkkdrigesqpfrertlsvedprtlwspysnlsgt
avkispghdhndyeVAQRLNLPLITVFNEEGVIIGDYgeftgmkrfdaRTRVTEVLtekglyrgtvshAMVVPlcsrskdvvepLLKPQWYVRTGEMAEKAVQAVKTgelkiipdhhtkTWYQWLENNREKkdrigesqpfrertlsvedprtlwspysnlsgt
AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDRIGESQPFRERTLSVEDPRTLWSPYSNLSGT
************YEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLE**************************************
AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDRIGESQPFRERTLSVEDPRTLWSPYSNL***
********DHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDRIGESQPFRERTLSVEDPRTLWSPYSNLSGT
*VKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDRIGESQPFRERTLSVEDPRTLWSP*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDRIGESQPFRERTLSVEDPRTLWSPYSNLSGT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query164 2.2.26 [Sep-21-2011]
Q9U1Q4 1050 Valine--tRNA ligase OS=Ca yes N/A 0.792 0.123 0.623 4e-44
P49696 1217 Valine--tRNA ligase OS=Ta N/A N/A 0.792 0.106 0.530 5e-39
Q9Z1Q9 1263 Valine--tRNA ligase OS=Mu yes N/A 0.792 0.102 0.538 4e-38
P26640 1264 Valine--tRNA ligase OS=Ho yes N/A 0.792 0.102 0.546 4e-38
Q04462 1264 Valine--tRNA ligase OS=Ra yes N/A 0.792 0.102 0.530 8e-38
Q86KU2 1072 Probable valine--tRNA lig yes N/A 0.792 0.121 0.541 3e-36
O75005 980 Valine--tRNA ligase OS=Sc yes N/A 0.774 0.129 0.496 3e-33
Q54I78 1051 Probable valine--tRNA lig no N/A 0.768 0.119 0.456 8e-31
Q8SS27 921 Probable valine--tRNA lig yes N/A 0.786 0.140 0.461 2e-30
P28350 1093 Valine--tRNA ligase, mito N/A N/A 0.774 0.116 0.472 2e-30
>sp|Q9U1Q4|SYV_CAEEL Valine--tRNA ligase OS=Caenorhabditis elegans GN=vrs-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  177 bits (448), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 81/130 (62%), Positives = 97/130 (74%)

Query: 1   AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKG 60
           AVKI+P HDHNDYEV  R NLP      ++G+I    GEF+GMKRFDART V E L EKG
Sbjct: 371 AVKITPAHDHNDYEVGIRQNLPFHNCITDDGLISQGCGEFSGMKRFDARTAVIEALKEKG 430

Query: 61  LYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKT 120
           LYRG   + MVVP CSRSKDV+EP+LKPQWYV+   MAEKAV AV  G+L+IIP+ H  T
Sbjct: 431 LYRGKEDNPMVVPTCSRSKDVIEPILKPQWYVKCAHMAEKAVAAVANGDLQIIPEFHKAT 490

Query: 121 WYQWLENNRE 130
           W +WLE++R+
Sbjct: 491 WNRWLESSRD 500

Caenorhabditis elegans (taxid: 6239)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 9
>sp|P49696|SYVC_TAKRU Valine--tRNA ligase OS=Takifugu rubripes GN=vars PE=3 SV=1 Back     alignment and function description
>sp|Q9Z1Q9|SYVC_MOUSE Valine--tRNA ligase OS=Mus musculus GN=Vars PE=2 SV=1 Back     alignment and function description
>sp|P26640|SYVC_HUMAN Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4 Back     alignment and function description
>sp|Q04462|SYVC_RAT Valine--tRNA ligase OS=Rattus norvegicus GN=Vars PE=2 SV=2 Back     alignment and function description
>sp|Q86KU2|SYVC_DICDI Probable valine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=valS1 PE=3 SV=1 Back     alignment and function description
>sp|O75005|SYV_SCHPO Valine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vas2 PE=3 SV=1 Back     alignment and function description
>sp|Q54I78|SYVM_DICDI Probable valine--tRNA ligase, mitochondrial OS=Dictyostelium discoideum GN=valS2 PE=3 SV=2 Back     alignment and function description
>sp|Q8SS27|SYVC_ENCCU Probable valine--tRNA ligase, cytoplasmic OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU04_1140 PE=3 SV=1 Back     alignment and function description
>sp|P28350|SYV_NEUCR Valine--tRNA ligase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cyt-20 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query164
195124630 1048 GI21262 [Drosophila mojavensis] gi|19391 0.792 0.124 0.653 5e-49
195380978 1048 GJ20865 [Drosophila virilis] gi|19414403 0.792 0.124 0.653 8e-49
195066025 1046 GH24997 [Drosophila grimshawi] gi|193896 0.792 0.124 0.646 2e-48
195154941 1048 GL16801 [Drosophila persimilis] gi|19411 0.792 0.124 0.646 1e-47
195333986 1049 GM21449 [Drosophila sechellia] gi|194125 0.792 0.123 0.646 1e-47
195582973 808 GD10948 [Drosophila simulans] gi|1941933 0.792 0.160 0.646 2e-47
195485094 1049 Aats-val [Drosophila yakuba] gi|19417704 0.792 0.123 0.646 2e-47
17864482 1049 Valyl-tRNA synthetase, isoform A [Drosop 0.792 0.123 0.646 2e-47
442623560 1055 Valyl-tRNA synthetase, isoform C [Drosop 0.792 0.123 0.646 2e-47
194883432 1049 GG20362 [Drosophila erecta] gi|190658992 0.792 0.123 0.646 2e-47
>gi|195124630|ref|XP_002006794.1| GI21262 [Drosophila mojavensis] gi|193911862|gb|EDW10729.1| GI21262 [Drosophila mojavensis] Back     alignment and taxonomy information
 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 85/130 (65%), Positives = 108/130 (83%)

Query: 1   AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKG 60
           AVKI+P HD NDYEV +R NLP IT+FN++G IIGDYGEFTG+KRFD R R+ E L + G
Sbjct: 380 AVKITPAHDPNDYEVGKRCNLPFITIFNDDGFIIGDYGEFTGLKRFDCRKRLLEKLKQLG 439

Query: 61  LYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKT 120
           LYR T+++AMVVP+CSRSKDVVEPL+KPQWYV   +MA  A ++V++GELKI+P+HHTKT
Sbjct: 440 LYRETLNNAMVVPICSRSKDVVEPLIKPQWYVSCADMAAAATESVRSGELKILPEHHTKT 499

Query: 121 WYQWLENNRE 130
           WY W++  R+
Sbjct: 500 WYHWMDGIRD 509

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195380978|ref|XP_002049233.1| GJ20865 [Drosophila virilis] gi|194144030|gb|EDW60426.1| GJ20865 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195066025|ref|XP_001996766.1| GH24997 [Drosophila grimshawi] gi|193896621|gb|EDV95487.1| GH24997 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195154941|ref|XP_002018371.1| GL16801 [Drosophila persimilis] gi|194114167|gb|EDW36210.1| GL16801 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|195333986|ref|XP_002033667.1| GM21449 [Drosophila sechellia] gi|194125637|gb|EDW47680.1| GM21449 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|195582973|ref|XP_002081300.1| GD10948 [Drosophila simulans] gi|194193309|gb|EDX06885.1| GD10948 [Drosophila simulans] Back     alignment and taxonomy information
>gi|195485094|ref|XP_002090947.1| Aats-val [Drosophila yakuba] gi|194177048|gb|EDW90659.1| Aats-val [Drosophila yakuba] Back     alignment and taxonomy information
>gi|17864482|ref|NP_524838.1| Valyl-tRNA synthetase, isoform A [Drosophila melanogaster] gi|24653289|ref|NP_725259.1| Valyl-tRNA synthetase, isoform B [Drosophila melanogaster] gi|7303353|gb|AAF58412.1| Valyl-tRNA synthetase, isoform A [Drosophila melanogaster] gi|21627263|gb|AAM68598.1| Valyl-tRNA synthetase, isoform B [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|442623560|ref|NP_001260946.1| Valyl-tRNA synthetase, isoform C [Drosophila melanogaster] gi|440214359|gb|AGB93478.1| Valyl-tRNA synthetase, isoform C [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|194883432|ref|XP_001975805.1| GG20362 [Drosophila erecta] gi|190658992|gb|EDV56205.1| GG20362 [Drosophila erecta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query164
FB|FBgn0027079 1049 Aats-val "Valyl-tRNA synthetas 0.792 0.123 0.646 1.2e-44
WB|WBGene00006936 1050 vars-2 [Caenorhabditis elegans 0.792 0.123 0.623 8.2e-40
ZFIN|ZDB-GENE-010601-1 1264 vars "valyl-tRNA synthetase" [ 0.792 0.102 0.561 2.7e-37
MGI|MGI:90675 1263 Vars "valyl-tRNA synthetase" [ 0.792 0.102 0.538 3.3e-34
UNIPROTKB|H0Y4A6 1183 VARS "Valine--tRNA ligase" [Ho 0.792 0.109 0.546 3.8e-34
UNIPROTKB|E2RTJ7 1264 VARS "Uncharacterized protein" 0.792 0.102 0.538 4.3e-34
UNIPROTKB|B0V043 1264 VARS "Valine--tRNA ligase" [Ho 0.792 0.102 0.546 4.3e-34
UNIPROTKB|P26640 1264 VARS "Valine--tRNA ligase" [Ho 0.792 0.102 0.546 4.3e-34
RGD|3950 1264 Vars "valyl-tRNA synthetase" [ 0.792 0.102 0.530 7e-34
UNIPROTKB|E1BLV6 1001 VARS "Uncharacterized protein" 0.792 0.129 0.523 1.2e-33
FB|FBgn0027079 Aats-val "Valyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 480 (174.0 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 84/130 (64%), Positives = 105/130 (80%)

Query:     1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKG 60
             AVKI+P HD NDYEV +R NLP IT+FN++G IIGDYGEFTGMKRF+ R ++ E L    
Sbjct:   381 AVKITPAHDPNDYEVGKRCNLPFITIFNDDGYIIGDYGEFTGMKRFECRKKILEKLKALN 440

Query:    61 LYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKT 120
             LYR T+++ MVVP+CSRSKDVVEPL+KPQWYV   +MA  A +AV++GELKIIP+HHTKT
Sbjct:   441 LYRETLNNPMVVPICSRSKDVVEPLIKPQWYVSCSDMAASATEAVRSGELKIIPEHHTKT 500

Query:   121 WYQWLENNRE 130
             WY W++  R+
Sbjct:   501 WYHWMDGIRD 510
GO:0004832 "valine-tRNA ligase activity" evidence=ISS
GO:0006438 "valyl-tRNA aminoacylation" evidence=ISS
GO:0004818 "glutamate-tRNA ligase activity" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA
GO:0022008 "neurogenesis" evidence=IMP
WB|WBGene00006936 vars-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010601-1 vars "valyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:90675 Vars "valyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y4A6 VARS "Valine--tRNA ligase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RTJ7 VARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B0V043 VARS "Valine--tRNA ligase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P26640 VARS "Valine--tRNA ligase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|3950 Vars "valyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BLV6 VARS "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q86KU2SYVC_DICDI6, ., 1, ., 1, ., 90.54190.79260.1212yesN/A
Q9Z1Q9SYVC_MOUSE6, ., 1, ., 1, ., 90.53840.79260.1029yesN/A
P26640SYVC_HUMAN6, ., 1, ., 1, ., 90.54610.79260.1028yesN/A
Q04462SYVC_RAT6, ., 1, ., 1, ., 90.53070.79260.1028yesN/A
Q9U1Q4SYV_CAEEL6, ., 1, ., 1, ., 90.62300.79260.1238yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query164
PTZ00419 995 PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro 8e-58
PRK05729 874 PRK05729, valS, valyl-tRNA synthetase; Reviewed 3e-50
COG0525 877 COG0525, ValS, Valyl-tRNA synthetase [Translation, 2e-47
PLN02381 1066 PLN02381, PLN02381, valyl-tRNA synthetase 5e-42
TIGR00422 861 TIGR00422, valS, valyl-tRNA synthetase 5e-38
pfam00133 606 pfam00133, tRNA-synt_1, tRNA synthetases class I ( 7e-37
PRK14900 1052 PRK14900, valS, valyl-tRNA synthetase; Provisional 8e-34
PLN02943 958 PLN02943, PLN02943, aminoacyl-tRNA ligase 5e-31
cd00817 382 cd00817, ValRS_core, catalytic core domain of valy 3e-22
PRK13208 800 PRK13208, valS, valyl-tRNA synthetase; Reviewed 1e-18
PRK06039 975 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe 8e-15
COG0060 933 COG0060, IleS, Isoleucyl-tRNA synthetase [Translat 1e-14
TIGR00392 861 TIGR00392, ileS, isoleucyl-tRNA synthetase 2e-14
PRK05743 912 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewe 7e-10
PRK00390 805 PRK00390, leuS, leucyl-tRNA synthetase; Validated 7e-08
pfam13603178 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, 3e-06
TIGR00396 842 TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba 1e-05
PLN02563 963 PLN02563, PLN02563, aminoacyl-tRNA ligase 0.002
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information 
 Score =  193 bits (493), Expect = 8e-58
 Identities = 72/127 (56%), Positives = 89/127 (70%)

Query: 1   AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKG 60
           AVKI+P HD NDYE+A+R NLP I +F  +G I  + GEF GM RFD R ++ E L E G
Sbjct: 315 AVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMG 374

Query: 61  LYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKT 120
           L R  V + M +P CSRS D+VEP+L PQWYV   +MA++AV+AV+ GELKIIP  H   
Sbjct: 375 LLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSSHENV 434

Query: 121 WYQWLEN 127
           WY WLEN
Sbjct: 435 WYHWLEN 441

Length = 995
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) Back     alignment and domain information
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2 Back     alignment and domain information
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 164
COG0525 877 ValS Valyl-tRNA synthetase [Translation, ribosomal 100.0
COG0060 933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 100.0
PLN02381 1066 valyl-tRNA synthetase 100.0
PLN02843 974 isoleucyl-tRNA synthetase 100.0
PTZ00419 995 valyl-tRNA synthetase-like protein; Provisional 100.0
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 100.0
PLN02882 1159 aminoacyl-tRNA ligase 100.0
PF00133 601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 100.0
PRK05729 874 valS valyl-tRNA synthetase; Reviewed 100.0
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
PRK13804 961 ileS isoleucyl-tRNA synthetase; Provisional 100.0
TIGR00422 861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 100.0
KOG0432|consensus 995 100.0
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 100.0
PLN02943 958 aminoacyl-tRNA ligase 100.0
TIGR00392 861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 100.0
PRK13208 800 valS valyl-tRNA synthetase; Reviewed 100.0
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 100.0
PLN02959 1084 aminoacyl-tRNA ligase 100.0
TIGR00395 938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 100.0
KOG0433|consensus 937 100.0
KOG0434|consensus 1070 99.97
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 99.79
PLN02563 963 aminoacyl-tRNA ligase 99.77
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 99.76
cd00817 382 ValRS_core catalytic core domain of valyl-tRNA syn 99.75
PRK12268 556 methionyl-tRNA synthetase; Reviewed 99.67
PRK12267 648 methionyl-tRNA synthetase; Reviewed 99.65
TIGR00398 530 metG methionyl-tRNA synthetase. The methionyl-tRNA 99.65
cd00818 338 IleRS_core catalytic core domain of isoleucyl-tRNA 99.6
KOG0437|consensus 1080 99.6
PRK11893 511 methionyl-tRNA synthetase; Reviewed 99.59
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 99.53
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 99.45
PF13603185 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; P 99.44
COG0143 558 MetG Methionyl-tRNA synthetase [Translation, ribos 99.4
PLN02610 801 probable methionyl-tRNA synthetase 99.26
PLN02224 616 methionine-tRNA ligase 99.25
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 99.2
COG0495 814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 99.16
PF09334 391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 99.15
cd00812 314 LeuRS_core catalytic core domain of leucyl-tRNA sy 98.83
KOG0435|consensus 876 98.45
PLN02563 963 aminoacyl-tRNA ligase 98.22
COG0495 814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 98.2
KOG0436|consensus 578 98.19
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 98.1
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 97.8
KOG0435|consensus 876 97.74
KOG1247|consensus 567 97.35
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-45  Score=326.92  Aligned_cols=144  Identities=42%  Similarity=0.726  Sum_probs=140.1

Q ss_pred             CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCC-CCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCC
Q psy953            1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYG-EFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSK   79 (164)
Q Consensus         1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~-~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g   79 (164)
                      |||+|||||++||+++++|+||+++++|++|+++++++ +|+||++++||++|++.|++.|++.+.+++.|++|||+|||
T Consensus       268 ~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g  347 (877)
T COG0525         268 AVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCG  347 (877)
T ss_pred             eEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCC
Confidence            79999999999999999999999999999999997775 99999999999999999999999999999999999999999


Q ss_pred             CeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccccC
Q psy953           80 DVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRER  144 (164)
Q Consensus        80 ~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~~  144 (164)
                      ++|||++++|||+++..+++.+++++++|+++|+|+.+++++.+||++++|||||    ||+|||++..
T Consensus       348 ~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~  416 (877)
T COG0525         348 TPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYC  416 (877)
T ss_pred             ceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEe
Confidence            9999999999999999999999999998999999999999999999999999999    9999997754

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>KOG0432|consensus Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>KOG0433|consensus Back     alignment and domain information
>KOG0434|consensus Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>KOG0437|consensus Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>KOG0435|consensus Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0436|consensus Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>KOG0435|consensus Back     alignment and domain information
>KOG1247|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query164
1gax_A 862 Crystal Structure Of Thermus Thermophilus Valyl-Trn 1e-16
1qu2_A 917 Insights Into Editing From An Ile-Trna Synthetase S 4e-10
1wk9_A146 Structural Basis For Non-Cognate Amino Acid Discrim 1e-05
1wka_A147 Structural Basis For Non-Cognate Amino Acid Discrim 1e-05
1obh_A 878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 5e-05
2v0c_A 878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 5e-05
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna Synthetase Complexed With Trna(Val) And Valyl-Adenylate Analogue Length = 862 Back     alignment and structure 
Iteration: 1

 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 1   AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY--GEFTGMKRFDARTRVTEVLTE 58
           A+K++P HD  DYE+ +R  L  ++V N EG + G+       G+ RF+AR +  E+  E
Sbjct: 268 ALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFRE 327
Query: 59  KGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHT 118
            G       + + +  CSR    +E  + PQW++R   +AE+ ++ ++ G++  +P+   
Sbjct: 328 AGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWK 387
Query: 119 KTWYQWLENNRE 130
           K    WLEN ++
Sbjct: 388 KVNMDWLENVKD 399
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure With Trna(Ile) And Mupirocin Length = 917 Back     alignment and structure
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination By The Valyl-Trna Synthetase Editing Domain Length = 146 Back     alignment and structure
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination By The Valyl-Trna Synthetase Editing Domain Length = 147 Back     alignment and structure
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878 Back     alignment and structure
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query164
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 1e-49
1wka_A147 Valyl-tRNA synthetase; editing, CP1, fidelity, the 2e-20
1ile_A 821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 1e-13
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 2e-11
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 1e-10
1wkb_A 810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 4e-09
3o0a_A219 Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt 8e-09
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 1e-08
2ajg_A196 Leucyl-tRNA synthetase; editing domain, ligase; 2. 1e-07
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 2e-07
1wny_A186 Isoleucyl-tRNA synthetase; ligase, structural geno 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Back     alignment and structure
 Score =  169 bits (431), Expect = 1e-49
 Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 2/129 (1%)

Query: 1   AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY--GEFTGMKRFDARTRVTEVLTE 58
           A+K++P HD  DYE+ +R  L  ++V N EG + G+       G+ RF+AR +  E+  E
Sbjct: 268 ALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFRE 327

Query: 59  KGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHT 118
            G       + + +  CSR    +E  + PQW++R   +AE+ ++ ++ G++  +P+   
Sbjct: 328 AGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWK 387

Query: 119 KTWYQWLEN 127
           K    WLEN
Sbjct: 388 KVNMDWLEN 396
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* Length = 147 Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917 Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 Back     alignment and structure
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A Length = 219 Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 Back     alignment and structure
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A Length = 196 Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 Back     alignment and structure
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A Length = 186 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query164
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 100.0
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 100.0
1ile_A 821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 100.0
1wkb_A 810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 100.0
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 100.0
1wny_A186 Isoleucyl-tRNA synthetase; ligase, structural geno 99.8
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 99.79
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 99.79
1wka_A147 Valyl-tRNA synthetase; editing, CP1, fidelity, the 99.77
3o0a_A219 Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt 99.73
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 99.66
2ajg_A196 Leucyl-tRNA synthetase; editing domain, ligase; 2. 99.64
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 99.64
2wfg_A261 Cytosolic leucyl-tRNA synthetase; ligase, editing 99.6
4dlp_A 536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 99.6
2d5b_A 500 Methionyl-tRNA synthetase; rossmann fold, class 1A 99.6
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 99.53
2csx_A 497 Methionyl-tRNA synthetase; ligase, riken structura 99.49
3h99_A 560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 99.48
2wfd_A252 Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN 99.48
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 99.46
3pz6_A311 Leurs, leucyl-tRNA synthetase; editing domain, gll 99.04
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 98.13
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 97.8
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
Probab=100.00  E-value=3.3e-43  Score=318.21  Aligned_cols=154  Identities=29%  Similarity=0.552  Sum_probs=144.3

Q ss_pred             CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCC--CCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCC
Q psy953            1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY--GEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRS   78 (164)
Q Consensus         1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~--~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~   78 (164)
                      |||+|||||++||++|++||||++++||++|+|++++  +.|.|+++++||++|++.|+++|++.+.+++.|++||||||
T Consensus       268 ~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~  347 (862)
T 1gax_A          268 ALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRC  347 (862)
T ss_dssp             EEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTT
T ss_pred             ceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCC
Confidence            6999999999999999999999999999999999888  89999999999999999999999999999999999999999


Q ss_pred             CCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccccCcccccCCCee
Q psy953           79 KDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRERTLSVEDPRTL  154 (164)
Q Consensus        79 g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~~~~~~~~~~~~  154 (164)
                      |+++++++++|||++++++++++++++++++++|+|+++++++.+||++++|||||    ||+|||++..    ++.+++
T Consensus       348 ~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~----~~~~~i  423 (862)
T 1gax_A          348 GTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYC----EDCQAV  423 (862)
T ss_dssp             CSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEE----TTTCCE
T ss_pred             CCeEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceec----CCCCEE
Confidence            99999999999999999999999999987799999999999999999999999999    9999997421    234566


Q ss_pred             eeec
Q psy953          155 WSPY  158 (164)
Q Consensus       155 ~~~~  158 (164)
                      ||++
T Consensus       424 ~v~~  427 (862)
T 1gax_A          424 NVPR  427 (862)
T ss_dssp             ECCC
T ss_pred             EEec
Confidence            6654
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* Back     alignment and structure
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 164
d1ffya2194 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (Il 5e-09
d1wkaa1143 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) 1e-08
d1h3na2192 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS 2e-07
d1udza_179 b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {T 9e-06
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 194 Back     information, alignment and structure

class: All beta proteins
fold: ValRS/IleRS/LeuRS editing domain
superfamily: ValRS/IleRS/LeuRS editing domain
family: ValRS/IleRS/LeuRS editing domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

 Score = 50.8 bits (120), Expect = 5e-09
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 1   AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKG 60
            V  +PGH  +DY V Q+  LP+I+  +++GV   + G+F GM    A   VT++LTEKG
Sbjct: 123 CVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKG 182

Query: 61  --LYRGTVSH 68
             L    ++H
Sbjct: 183 ALLKLDFITH 192
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 143 Back     information, alignment and structure
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 192 Back     information, alignment and structure
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 179 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query164
d1wkaa1143 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.84
d1ffya2194 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.79
d1udza_179 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.76
d1h3na2192 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.71
d1ffya3 450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.56
d1rqga2 361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 99.23
d1ilea3 452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.17
d1ivsa4 425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.02
d1pfva2 350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 98.51
d1h3na3 494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 98.1
d2d5ba2 348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 94.65
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: All beta proteins
fold: ValRS/IleRS/LeuRS editing domain
superfamily: ValRS/IleRS/LeuRS editing domain
family: ValRS/IleRS/LeuRS editing domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=1.2e-21  Score=141.39  Aligned_cols=68  Identities=34%  Similarity=0.595  Sum_probs=64.1

Q ss_pred             CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCC--CCCCCccHHHHHHHHHHHHHHCCCeeeeeee
Q psy953            1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY--GEFTGMKRFDARTRVTEVLTEKGLYRGTVSH   68 (164)
Q Consensus         1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~--~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~   68 (164)
                      |||+|||||++||++|++||||++++||++|+|+++.  ++|+||++++||++|++.|+++|++.+.++|
T Consensus        74 ~V~~aPaHd~~D~~~~~k~~L~~~~~i~~~G~~~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~gll~k~e~y  143 (143)
T d1wkaa1          74 ALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY  143 (143)
T ss_dssp             EEEECTTTCHHHHHHHHHHTCCCCCSBCTTSBBCSTTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             eEEEeccCChHHHHHHHhhcccccccccccceEeeecchHhhCCCcHHHHHHHHHHHHHhCCCEEeeecC
Confidence            6999999999999999999999999999999998653  5799999999999999999999999998875
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure