Psyllid ID: psy9560

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500---
Protein Sequence
MGEETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHcccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccEHHHHHHHHHHHccccccHcHHHHHHHHHHHHHHHHHccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgeetpaaaetpAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEAsgarrkkgfmtpeRKKKLRLLLRKKAAEELKREQERRALERKRVidercgepkdtddmAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEdaekekkpewvkepeskkkripipepepepesatdasdvedgketplppegeqppveevppppepepeppveeipptppspvtpnpeELWLYLKDtvsasnpvsIDDLVEKLMSAvsatpqpllKSVVKDTLRRQasheeteggepkpegeapadgappaegappaegappaegappaegappaegappaegappaegapaaegapappaegpppaegappaeapppaegapaaegapapaegapappaegapraegappaegapappaegapappaegapappadappaepappaeappaesapa
Flexible Loop (DISEMBL)
mgeetpaaaetpaeaaaasaedeAKRLKLeelerkraevrrrmeeasgarrkkgfmtperkkKLRLLLRKKAAEELKReqerralerkrvidercgepkdtddmaeDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITelgkqvndlrgkfvrpilkkvSKYENKFAKLQKkaaefnfrsqlkavkkrefsmedaekekkpewvkepeskkkripipepepepesatdasdveDGKEtplppegeqppvEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSavsatpqpllksvvKDTLRRQASheeteggepkpegEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA
Low Complexity Region (SEG)
MGeetpaaaetpaeaaaasaedeakrlkleelerkraevrrrmeeASGARRKKGFMTPerkkklrlllrkkaaeelkreqerralerkrVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAekekkpewvkepeskkkripipepepepesATDASDVEDGKetplppegeqppveevppppepepeppveeipptppspvtpnpeeLWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETeggepkpegeapadgappaegappaegappaegappaegappaegappaegappaegapaaegapappaegpppaegappaeapppaegapaaegapapaegapappaegapraegappaegapappaegapappaegapappadappaepappaeappaesapa
Disordered region (IsUnstruct)
************************************************************************************************************IGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQK****F*********************************************************************************************************LWLYLKDTVSASNPVSIDDLVEK***************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*****************************************************************LLLRKKAAE******************ERCGE*********DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKK*******************FRSQLKAVK*************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
***********************AKRLKLEELERKR******************FMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVK******************************************************************************************PNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVK*********************************************************************************************************************************************************************************
Disordered Region (DISPRO)
*****************************************RM***S******GFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAA*************************************************************************************************************************************************************************************************************************************************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEETPAAAETPAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRRKKGFMTPERKKxxxxxxxxxxxxxxxxxxxxxxxxxxxVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	503	2.2.26 [Sep-21-2011]
P05547	201	Troponin I OS=Pontastacus	N/A	N/A	0.335	0.840	0.644	5e-51
P36188	269	Troponin I OS=Drosophila	no	N/A	0.333	0.624	0.680	6e-50
O44572	194	Troponin I 4 OS=Caenorhab	yes	N/A	0.365	0.948	0.515	8e-36
Q20334	250	Troponin I 1 OS=Caenorhab	no	N/A	0.369	0.744	0.443	2e-28
Q9GYF1	242	Troponin I 2 OS=Caenorhab	no	N/A	0.351	0.731	0.459	6e-26
Q9XUN9	260	Troponin I 3 OS=Caenorhab	no	N/A	0.379	0.734	0.453	7e-25
Q7M3Y3	292	Troponin I OS=Chlamys nip	N/A	N/A	0.163	0.280	0.433	2e-12
P48787	211	Troponin I, cardiac muscl	yes	N/A	0.312	0.744	0.327	8e-09
P23693	211	Troponin I, cardiac muscl	yes	N/A	0.312	0.744	0.327	1e-08
P08057	212	Troponin I, cardiac muscl	yes	N/A	0.312	0.740	0.321	4e-07

>sp|P05547|TNNI_PONLE Troponin I OS=Pontastacus leptodactylus PE=1 SV=1

 Score =  202 bits (514), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 144/169 (85%)

Query: 30  EELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKR 89
           ++++RK+AEVR+R+EE S  ++KKGFMTPERKKKLRLLLRKKAAEELK+EQER+A ER++
Sbjct: 15  DDIDRKKAEVRKRLEEQSLKKQKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAGERRK 74

Query: 90  VIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVN 149
           +ID+RCG+PK+ D   E+++  + +EY+     +E+ KY+++ EI+ KD+EI EL  QVN
Sbjct: 75  IIDQRCGQPKNLDGANEEQLRAIIKEYFDHTAQIESDKYDVELEIIRKDYEINELNIQVN 134

Query: 150 DLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMED 198
           DLRGKF++P LKKVSKYENKFAKLQKKAAEFNFR+QLK VKK+EF +ED
Sbjct: 135 DLRGKFIKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKTVKKKEFELED 183

Troponin I is the actomyosin ATPase inhibitory subunit present in the thin filament regulatory complex.
Pontastacus leptodactylus (taxid: 6717)

>sp|P36188|TNNI_DROME Troponin I OS=Drosophila melanogaster GN=wupA PE=2 SV=3

 Score =  199 bits (505), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 115/169 (68%), Positives = 144/169 (85%), Gaps = 1/169 (0%)

Query: 22  DEAKRLKLEELERKRAEVRRRMEEASGARRKK-GFMTPERKKKLRLLLRKKAAEELKREQ 80
           +EAK+ K  E+ERKRAEVR+RMEEAS A++ K GFMTPERKKKLRLLLRKKAAEELK+EQ
Sbjct: 65  EEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQ 124

Query: 81  ERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFE 140
           ER+A ER+R+I+ERCG P++  D +E E+ ++C+EY++R+Y  E  K++L+ E+  KD+E
Sbjct: 125 ERKAAERRRIIEERCGSPRNLSDASEGELQEICEEYYERMYICEGQKWDLEYEVRKKDWE 184

Query: 141 ITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAV 189
           I +L  QVNDLRGKFV+P LKKVSKYENKFAKLQKKAAEFNFR+QLK V
Sbjct: 185 INDLNAQVNDLRGKFVKPALKKVSKYENKFAKLQKKAAEFNFRNQLKVV 233

Troponin I is the ATPase inhibitory subunit of troponin in the thin filament regulatory complex. Involved in the development and maintenance of muscle and nervous system. May also be involved in the cytoskeletal apparatus.

Drosophila melanogaster (taxid: 7227)

>sp|O44572|TNNI4_CAEEL Troponin I 4 OS=Caenorhabditis elegans GN=tni-4 PE=2 SV=2

 Score =  152 bits (383), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 99/192 (51%), Positives = 134/192 (69%), Gaps = 8/192 (4%)

Query: 22  DEAKRLKLEELERKRAEVRRRMEEASGARR-KKGFMTPERKKKLRLLLRKKAAEELKREQ 80
           DEA+  K+ E ERK+ EVR+R+EEAS  ++ KKGF+TPERKKKLR LL  KAAE+LK++Q
Sbjct: 7   DEAR--KMAERERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQ 64

Query: 81  ERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFE 140
             +  ER+R++ ER     D D+  ED++  +  E  +R+ +LE+  Y++   +  KDFE
Sbjct: 65  MLKEQERQRILQERIIPLPDLDN--EDDLEAVYDEIRERLIDLESENYDVSYIVRQKDFE 122

Query: 141 ITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKK-AAEFNFRSQLKAVKKREFSM--E 197
           I EL   VNDLRGKFV+P LKKVSK E KF KL+KK A + +FR+QLK V K EF++  E
Sbjct: 123 INELTIAVNDLRGKFVKPTLKKVSKTEGKFDKLKKKEATKVDFRAQLKVVDKNEFALDEE 182

Query: 198 DAEKEKKPEWVK 209
           D EK++K  W K
Sbjct: 183 DTEKKEKAAWAK 194

Troponin I is the inhibitory subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to muscle actomyosin ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q20334|TNNI1_CAEEL Troponin I 1 OS=Caenorhabditis elegans GN=tni-1 PE=2 SV=1

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 121/203 (59%), Gaps = 17/203 (8%)

Query: 7   AAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRL 66
           AA ET  E A   A+         E E K+AEVR+R+EEA   ++KKGF+TPERKKKLR 
Sbjct: 13  AANETDGEDAQRKAQ---------EREAKKAEVRKRLEEAGQKKQKKGFLTPERKKKLRK 63

Query: 67  LLRKKAAEELKREQERRALERKRVIDERCG---EPKDTDDMAEDEIGDLCQEYWQRIYNL 123
           LL  KAAE+LK +Q R+  ER +V+ ER          DD A+ E   +  + + R+ NL
Sbjct: 64  LLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEA--IYNDLFSRLCNL 121

Query: 124 EAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKL---QKKAAEF 180
           E  KY+++      +  I +L  +VNDLRGKFV+P LKKVSKY+NKF K+   +K+    
Sbjct: 122 EEEKYDINHITTETETTINQLNIEVNDLRGKFVKPSLKKVSKYDNKFKKMAEAKKEDGSK 181

Query: 181 NFRSQLKAVKKREFSMEDAEKEK 203
           N R+ LK VKK     + A K+K
Sbjct: 182 NLRNNLKTVKKESVFTQIANKKK 204

Troponin I is the inhibitory subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to muscle actomyosin ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9GYF1|TNNI2_CAEEL Troponin I 2 OS=Caenorhabditis elegans GN=unc-27 PE=2 SV=2

 Score =  119 bits (298), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 10/187 (5%)

Query: 31  ELERKRAEVRRRMEEA-SGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKR 89
           E E K+AEVR+R+EEA +  + KKGF+TPERKKKLR LL  KAAE+LKR+Q  +  ER++
Sbjct: 15  EREAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQK 74

Query: 90  VIDERCGEPKDTDDMAEDEIGDLCQEY---WQRIYNLEAIKYELDREIMLKDFEITELGK 146
            + +R     + D +  D+ G L + Y   W R+  LE  KY+++  +   + EI  L  
Sbjct: 75  ALADRTISLPNVDSI--DDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEINSLTI 132

Query: 147 QVNDLRGKFVRPILKKVSKYENKFAKL--QKKAAEFNFRSQLKAVKK--REFSMEDAEKE 202
           +VNDLRGKFV+P LKKVSKY+NKF K    K   + +FR+ LK VKK   E  +   +K+
Sbjct: 133 EVNDLRGKFVKPSLKKVSKYDNKFKKSGESKAGTKEDFRANLKIVKKDVMEAIVNVKKKD 192

Query: 203 KKPEWVK 209
            KP+W K
Sbjct: 193 DKPDWSK 199

Troponin I is the inhibitory subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to muscle actomyosin ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9XUN9|TNNI3_CAEEL Troponin I 3 OS=Caenorhabditis elegans GN=tni-3 PE=2 SV=1

 Score =  115 bits (288), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 124/203 (61%), Gaps = 12/203 (5%)

Query: 16  AAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKG-FMTPERKKKLRLLLRKKAAE 74
           A A  ED+A R K +E E K+AEVR+RMEEA+    KK  F+TPERKKKLR LL  KAAE
Sbjct: 13  AQADVEDDAAR-KAQERELKKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAE 71

Query: 75  ELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEY---WQRIYNLEAIKYELD 131
           +LK++Q  +  ER++ + +R     D D + +   G L + Y   + R+  LE  K++++
Sbjct: 72  DLKQQQMLKEQERQKTLQQRTIPLPDVDSINDQ--GQLLKIYEDMFARVCALEEEKFDIN 129

Query: 132 REIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKK 191
             +   + EI +L  QVNDLRGKFV+P LKKVSKY+NKF    +   + NFR+ LK VKK
Sbjct: 130 FGVSQTEAEINQLTIQVNDLRGKFVKPTLKKVSKYDNKFKSSGEVKEKSNFRNNLKVVKK 189

Query: 192 REFSMEDAEKEK-----KPEWVK 209
                E   K+K     KPEW K
Sbjct: 190 ETDLDEIMAKKKGTADGKPEWSK 212

Troponin I is the inhibitory subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to muscle actomyosin ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q7M3Y3|TNNI_CHLNI Troponin I OS=Chlamys nipponensis akazara PE=1 SV=2

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 60/83 (72%), Gaps = 1/83 (1%)

Query: 112 LCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFA 171
           LC+++ +R+ +LE   Y+ + +I  +DFEI EL  +VND +GKFV+P+L+KV+K E+K  
Sbjct: 199 LCKDFHKRLASLEEDVYDWEAKIRKQDFEINELTLKVNDTKGKFVKPVLRKVNKTESKLD 258

Query: 172 KLQKK-AAEFNFRSQLKAVKKRE 193
           K+Q+K A + +FR  LK+ ++ E
Sbjct: 259 KIQRKEAKKSDFRDNLKSSREHE 281

Troponin I is the inhibitory subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Chlamys nipponensis akazara (taxid: 6571)

>sp|P48787|TNNI3_MOUSE Troponin I, cardiac muscle OS=Mus musculus GN=Tnni3 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 97/168 (57%), Gaps = 11/168 (6%)

Query: 51  RKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIG 110
           +KK  ++  RK +L+ L+ + A +E++RE E R  E+ RV+  RC +P + D +  +E+ 
Sbjct: 37  KKKSKISASRKLQLKTLMLQIAKQEMEREAEERRGEKGRVLRTRC-QPLELDGLGFEELQ 95

Query: 111 DLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKF 170
           DLC++   R+  ++  +Y+++ ++     EI +L +++ DLRGKF RP L++V    +  
Sbjct: 96  DLCRQLHARVDKVDEERYDVEAKVTKNITEIADLTQKIYDLRGKFKRPTLRRVRISADAM 155

Query: 171 --AKLQKKAAE-FNFRSQLKAVKKREFSMEDAEKEKKP--EWVKEPES 213
             A L  +A E  + R+ LK VKK     ED EKE +   +W K  ++
Sbjct: 156 MQALLGTRAKESLDLRAHLKQVKK-----EDIEKENREVGDWRKNIDA 198

Troponin I is the inhibitory subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Mus musculus (taxid: 10090)

>sp|P23693|TNNI3_RAT Troponin I, cardiac muscle OS=Rattus norvegicus GN=Tnni3 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 96/168 (57%), Gaps = 11/168 (6%)

Query: 51  RKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIG 110
           +KK  ++  RK +L+ L+ + A +E++RE E R  E+ RV+  RC +P   D +  +E+ 
Sbjct: 37  KKKSKISASRKLQLKTLMLQIAKQEMEREAEERRGEKGRVLSTRC-QPLVLDGLGFEELQ 95

Query: 111 DLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKF 170
           DLC++   R+  ++  +Y+++ ++     EI +L +++ DLRGKF RP L++V    +  
Sbjct: 96  DLCRQLHARVDKVDEERYDVEAKVTKNITEIADLTQKIYDLRGKFKRPTLRRVRISADAM 155

Query: 171 --AKLQKKAAE-FNFRSQLKAVKKREFSMEDAEKEKKP--EWVKEPES 213
             A L  +A E  + R+ LK VKK     ED EKE +   +W K  ++
Sbjct: 156 MQALLGTRAKESLDLRAHLKQVKK-----EDIEKENREVGDWRKNIDA 198

Troponin I is the inhibitory subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Rattus norvegicus (taxid: 10116)

>sp|P08057|TNNI3_BOVIN Troponin I, cardiac muscle OS=Bos taurus GN=TNNI3 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 94/168 (55%), Gaps = 11/168 (6%)

Query: 51  RKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIG 110
           +KK  ++  RK +L+ L+ + A +EL+RE E R  E+ R +  RC +P +   +   E+ 
Sbjct: 38  KKKSKISASRKLQLKTLMLQIAKQELEREAEERRGEKGRALSTRC-QPLELAGLGFAELQ 96

Query: 111 DLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKF 170
           DLC++   R+  ++  +Y+++ ++     EI +L +++ DLRGKF RP L++V    +  
Sbjct: 97  DLCRQLHARVDKVDEERYDVEAKVTKNITEIADLNQKIFDLRGKFKRPTLRRVRISADAM 156

Query: 171 --AKLQKKAAE-FNFRSQLKAVKKREFSMEDAEKEKK--PEWVKEPES 213
             A L  +A E  + R+ LK VKK     ED EKE +   +W K  ++
Sbjct: 157 MQALLGARAKETLDLRAHLKQVKK-----EDTEKENREVGDWRKNIDA 199

Troponin I is the inhibitory subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	503
328701103	434	PREDICTED: hypothetical protein LOC10016	0.628	0.728	0.553	1e-80
40994853	484	troponin I protein [Lethocerus indicus]	0.654	0.679	0.478	1e-59
158293949	210	AGAP001053-PB [Anopheles gambiae str. PE	0.385	0.923	0.676	2e-58
157127597	207	troponin i [Aedes aegypti] gi|108872894|	0.387	0.942	0.683	6e-58
347965042	210	AGAP001053-PD [Anopheles gambiae str. PE	0.385	0.923	0.666	2e-57
332016424	626	Troponin I [Acromyrmex echinatior]	0.379	0.305	0.661	3e-57
170058014	204	troponin i [Culex quinquefasciatus] gi|1	0.387	0.955	0.668	4e-57
239793611	207	ACYPI005885 [Acyrthosiphon pisum]	0.389	0.946	0.675	4e-57
157127583	207	troponin i [Aedes aegypti] gi|108872887|	0.387	0.942	0.668	6e-57
157127595	207	troponin i [Aedes aegypti] gi|108872893|	0.387	0.942	0.673	9e-57

>gi|328701103|ref|XP_001947440.2| PREDICTED: hypothetical protein LOC100164905 [Acyrthosiphon pisum]

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 192/347 (55%), Positives = 244/347 (70%), Gaps = 31/347 (8%)

Query: 20  AEDEAKRLKLEELERKRAEVRRRMEEASGARRKK-GFMTPERKKKLRLLLRKKAAEELKR 78
           A+DEAK+ K  E++RKRAEVR+RMEEAS A++ K GFMTP+RKKKLRLLLRKKAAEELK+
Sbjct: 2   ADDEAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPDRKKKLRLLLRKKAAEELKK 61

Query: 79  EQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKD 138
           EQER+A ER+R+I+ERCG+PK+ DD  ED I  + +EY+ RI  LE  K++L+  +  KD
Sbjct: 62  EQERKAAERRRIIEERCGQPKNIDDAGEDTIKRVIKEYYDRITKLEDQKFDLEYVVKKKD 121

Query: 139 FEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMED 198
           FEI+EL  QVNDLRGKFV+P LKKVSKYENKFAKLQKKAAEFNFR+QLK VKK+EF++E+
Sbjct: 122 FEISELNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEE 181

Query: 199 AEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPP 258
            +KEKKP+W K+ + KK        E E    T+    +DG    L  EGE    +    
Sbjct: 182 EDKEKKPDWSKKGDEKK-------GEGEDGDGTEDEKTDDG----LTTEGESVAGDLTDA 230

Query: 259 PPEPEPEPPV-----EEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAV 313
             + + +  +        P   P P +P PEELW YLKDTV ++NP+S+DDLV+KLM+AV
Sbjct: 231 TEDAQSDNEILEPEPVVEPEPEPQPPSPAPEELWAYLKDTVCSNNPLSVDDLVDKLMTAV 290

Query: 314 SATPQPLLKSVVKDTLRRQASHEE-TEGGEPKPEGEAPADGAPPAEG 359
           +A PQPLL SVVKDT+++Q S +E  EGG             PPAEG
Sbjct: 291 TAIPQPLLNSVVKDTIKKQKSIDEGIEGG-------------PPAEG 324

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|40994853|emb|CAF18234.1| troponin I protein [Lethocerus indicus]

 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 166/347 (47%), Positives = 229/347 (65%), Gaps = 18/347 (5%)

Query: 20  AEDEAKRLKLEELERKRAEVRRRMEEAS-GARRKKGFMTPERKKKLRLLLRKKAAEELKR 78
           A++EAK+ K  E+ERKRAEVR+RMEEAS   + KKGFMTPERKKKLRLLLRKKAAEELK+
Sbjct: 2   ADEEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKK 61

Query: 79  EQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKD 138
           EQER+A ER+R+I+ERCG   D D+  ED++ ++ Q Y+ R+Y  E+ K++L+ E+  +D
Sbjct: 62  EQERKAAERRRIIEERCGHCCDVDNANEDDLHEVIQHYYDRMYTCESQKWDLEYEVRKRD 121

Query: 139 FEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMED 198
            EI++L  QVNDLRGKFV+P LKKVSKYENKFAKLQKKAAEFNFR+QLK VKK+EF+ME+
Sbjct: 122 LEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTMEE 181

Query: 199 AEKEKK-PEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVP 257
            EKEKK  +W K+ E K     + E         + S V++      PP   Q    E+P
Sbjct: 182 EEKEKKVVDWSKKDEKK-----VDEEAVVNSDVAELSSVQESVSQEAPPVDTQSEASEIP 236

Query: 258 PPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATP 317
                E     E+     P P     ++LWL+LK+ ++++NP+++++L +KL+  VS  P
Sbjct: 237 TTTTQEEHKQEEQQQQQQPPPPPKTEDDLWLFLKEAITSANPMTLEELQQKLIDTVSHVP 296

Query: 318 QPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAE 364
              L+ VV+ +++R  S ++             +  +  AEG PPAE
Sbjct: 297 PDFLEPVVEASIKRSQSMDQL-----------ASISSEVAEGGPPAE 332

Source: Lethocerus indicus

Species: Lethocerus indicus

Genus: Lethocerus

Family: Belostomatidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158293949|ref|XP_001688627.1| AGAP001053-PB [Anopheles gambiae str. PEST] gi|78101794|tpg|DAA05512.1| TPA_inf: troponin I isoform 6b2 [Anopheles gambiae str. PEST] gi|157016468|gb|EDO63968.1| AGAP001053-PB [Anopheles gambiae str. PEST]

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 132/195 (67%), Positives = 167/195 (85%), Gaps = 1/195 (0%)

Query: 20  AEDEAKRLKLEELERKRAEVRRRMEEASGARRKK-GFMTPERKKKLRLLLRKKAAEELKR 78
           A+DEAK+ K  E+ERKRAEVR+RMEEAS A++ K GFMTPERKKKLRLLLRKKAAEELK+
Sbjct: 2   ADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKK 61

Query: 79  EQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKD 138
           EQER+A ER+R+I+ERCG+PK+ +D  E E+  +C+EYW R++ LE  K++L+R   LK 
Sbjct: 62  EQERKAAERRRIIEERCGKPKNVEDANEAELQTICKEYWNRVFGLEGDKFDLERTEKLKQ 121

Query: 139 FEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMED 198
           +EI++L  QVNDLRGKFV+P LKKVSKYENKFAKLQKKAAEFNFR+QLK VKK+EF++E+
Sbjct: 122 YEISDLNAQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEE 181

Query: 199 AEKEKKPEWVKEPES 213
            +KEKKP+W K+ +S
Sbjct: 182 EDKEKKPDWSKKGDS 196

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127597|ref|XP_001661108.1| troponin i [Aedes aegypti] gi|108872894|gb|EAT37119.1| AAEL010850-PH [Aedes aegypti]

 Score =  231 bits (589), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 134/196 (68%), Positives = 167/196 (85%), Gaps = 1/196 (0%)

Query: 20  AEDEAKRLKLEELERKRAEVRRRMEEASGARRKK-GFMTPERKKKLRLLLRKKAAEELKR 78
           A+DEAK+ K  E+ERKRAEVR+RMEEAS A++ K GFMTPERKKKLRLLLRKKAAEELK+
Sbjct: 2   ADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKK 61

Query: 79  EQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKD 138
           EQER+A ER+R+I+ERCG+PK+ +D  E E+  + +EYW R++ LE  KY+L+R   LK 
Sbjct: 62  EQERKAAERRRIIEERCGKPKNIEDANEAELQTIVREYWNRMFLLEGDKYDLERGEKLKQ 121

Query: 139 FEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMED 198
           FEI++L  QVNDLRGKFV+P LKKVSKYENKFAKLQKKAAEFNFR+QLK VKK+EF++E+
Sbjct: 122 FEISDLNAQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEE 181

Query: 199 AEKEKKPEWVKEPESK 214
            +KEKKP+W K+ +SK
Sbjct: 182 EDKEKKPDWSKKGDSK 197

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347965042|ref|XP_003437191.1| AGAP001053-PD [Anopheles gambiae str. PEST] gi|347965044|ref|XP_003437192.1| AGAP001053-PG [Anopheles gambiae str. PEST] gi|333469361|gb|EGK97268.1| AGAP001053-PD [Anopheles gambiae str. PEST] gi|333469364|gb|EGK97271.1| AGAP001053-PG [Anopheles gambiae str. PEST]

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 168/195 (86%), Gaps = 1/195 (0%)

Query: 20  AEDEAKRLKLEELERKRAEVRRRMEEASGARRKK-GFMTPERKKKLRLLLRKKAAEELKR 78
           A+DEAK+ K  E+ERKRAEVR+RMEEAS A++ K GFMTPERKKKLRLLLRKKAAEELK+
Sbjct: 2   ADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKK 61

Query: 79  EQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKD 138
           EQER+A ER+R+I+ERCG+PK+ +D  ED++ D+ +EY+ R+Y  E  K++L+ E+  +D
Sbjct: 62  EQERKAAERRRIIEERCGKPKNVEDANEDQLKDIVKEYYNRMYTCEGQKWDLEYEVRKRD 121

Query: 139 FEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMED 198
           +EI++L  QVNDLRGKFV+P LKKVSKYENKFAKLQKKAAEFNFR+QLK VKK+EF++E+
Sbjct: 122 WEISDLNAQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEE 181

Query: 199 AEKEKKPEWVKEPES 213
            +KEKKP+W K+ +S
Sbjct: 182 EDKEKKPDWSKKGDS 196

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016424|gb|EGI57337.1| Troponin I [Acromyrmex echinatior]

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 158/192 (82%), Gaps = 1/192 (0%)

Query: 25  KRLKLEELERKRAEVRRRMEEASGARRKK-GFMTPERKKKLRLLLRKKAAEELKREQERR 83
           K+ K  E ERKRAEVR R+EEAS A++ K GFMTP+RKKKLRLLLRKKAAEELK+EQER+
Sbjct: 4   KKRKQAETERKRAEVRARLEEASKAKKAKKGFMTPDRKKKLRLLLRKKAAEELKKEQERK 63

Query: 84  ALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITE 143
           A ER+R+I+ERCG+PK  D+  E E+  +C  YW R+  LE  KY+L+R+I LK+ EI +
Sbjct: 64  AAERRRIIEERCGKPKIVDEANEAELQTICSAYWNRLSLLEGDKYDLERQIKLKELEIAD 123

Query: 144 LGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEK 203
           L  QVNDLRGKF++P LKKVSKYENKFAKLQKKAAEFNFR+QLK VKK+EF++E+ +KEK
Sbjct: 124 LNSQVNDLRGKFMKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKQVKKKEFTLEEEDKEK 183

Query: 204 KPEWVKEPESKK 215
           KP+W K+ + KK
Sbjct: 184 KPDWSKKGDEKK 195

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170058014|ref|XP_001864736.1| troponin i [Culex quinquefasciatus] gi|167877246|gb|EDS40629.1| troponin i [Culex quinquefasciatus]

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 131/196 (66%), Positives = 168/196 (85%), Gaps = 1/196 (0%)

Query: 20  AEDEAKRLKLEELERKRAEVRRRMEEASGARRKK-GFMTPERKKKLRLLLRKKAAEELKR 78
           A+DEAK+ K  E+ERKRAEVR+RMEEAS A++ K GFMTPERKKKLRLLLRKKAAEELK+
Sbjct: 2   ADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKK 61

Query: 79  EQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKD 138
           EQER+A ER+R+I+ERCG+PK+ +D  ED + D+ +EY+ R+Y  E  K++L+ E+  +D
Sbjct: 62  EQERKAAERRRIIEERCGKPKNVEDANEDMLKDIVKEYFNRMYTCEGQKWDLEFEVRKRD 121

Query: 139 FEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMED 198
           +EI++L  QVNDLRGKFV+P LKKVSKYENKFAKLQKKAAEFNFR+QLK VKK+EF++E+
Sbjct: 122 WEISDLNAQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEE 181

Query: 199 AEKEKKPEWVKEPESK 214
            +KEKKP+W K+ +SK
Sbjct: 182 EDKEKKPDWSKKGDSK 197

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239793611|dbj|BAH72914.1| ACYPI005885 [Acyrthosiphon pisum]

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 166/197 (84%), Gaps = 1/197 (0%)

Query: 20  AEDEAKRLKLEELERKRAEVRRRMEEASGARRKK-GFMTPERKKKLRLLLRKKAAEELKR 78
           A+DEAK+ K  E++RKRAEVR+RMEEAS A++ K GFMTP+RKKKLRLLLRKKAAEELK+
Sbjct: 2   ADDEAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPDRKKKLRLLLRKKAAEELKK 61

Query: 79  EQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKD 138
           EQER+A ER+R+I+ERCG+PK+ DD  ED I  + +EY+ RI  LE  K++L+  +  KD
Sbjct: 62  EQERKAAERRRIIEERCGQPKNIDDAGEDTIKRVIKEYYDRITKLEDQKFDLEYVVKKKD 121

Query: 139 FEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMED 198
           FEI+EL  QVNDLRGKFV+P LKKVSKYENKFAKLQKKAAEFNFR+QLK VKK+EF++E+
Sbjct: 122 FEISELNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEE 181

Query: 199 AEKEKKPEWVKEPESKK 215
            +KEKKP+W K+ + KK
Sbjct: 182 EDKEKKPDWSKKGDEKK 198

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127583|ref|XP_001661101.1| troponin i [Aedes aegypti] gi|108872887|gb|EAT37112.1| AAEL010850-PF [Aedes aegypti]

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 131/196 (66%), Positives = 168/196 (85%), Gaps = 1/196 (0%)

Query: 20  AEDEAKRLKLEELERKRAEVRRRMEEASGARRKK-GFMTPERKKKLRLLLRKKAAEELKR 78
           A+DEAK+ K  E+ERKRAEVR+RMEEAS A++ K GFMTPERKKKLRLLLRKKAAEELK+
Sbjct: 2   ADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKK 61

Query: 79  EQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKD 138
           EQER+A ER+R+I+ERCG+PK+ +D  ED + D+ +EY+ R+Y  E  K++L+ E+  +D
Sbjct: 62  EQERKAAERRRIIEERCGKPKNIEDANEDVLRDIVKEYFDRMYTCEGQKWDLEFEVRKRD 121

Query: 139 FEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMED 198
           +EI++L  QVNDLRGKFV+P LKKVSKYENKFAKLQKKAAEFNFR+QLK VKK+EF++E+
Sbjct: 122 WEISDLNAQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEE 181

Query: 199 AEKEKKPEWVKEPESK 214
            +KEKKP+W K+ +SK
Sbjct: 182 EDKEKKPDWSKKGDSK 197

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127595|ref|XP_001661107.1| troponin i [Aedes aegypti] gi|108872893|gb|EAT37118.1| AAEL010850-PI [Aedes aegypti]

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 132/196 (67%), Positives = 165/196 (84%), Gaps = 1/196 (0%)

Query: 20  AEDEAKRLKLEELERKRAEVRRRMEEASGARRKK-GFMTPERKKKLRLLLRKKAAEELKR 78
           A+DEAK+ K  E+ERKRAEVR+RMEEAS A++ K GFMTPERKKKLRLLLRKKAAEELK+
Sbjct: 2   ADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKK 61

Query: 79  EQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKD 138
           EQER+A ER+R+I+ERCG+PK+ +D  E  +  +C+EY +RI  LEA K + + E+  KD
Sbjct: 62  EQERKAAERRRIIEERCGKPKNIEDANEASVKHICKEYHKRICTLEAEKIDYEYEVARKD 121

Query: 139 FEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMED 198
            EI++L  QVNDLRGKFV+P LKKVSKYENKFAKLQKKAAEFNFR+QLK VKK+EF++E+
Sbjct: 122 LEISDLNAQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEE 181

Query: 199 AEKEKKPEWVKEPESK 214
            +KEKKP+W K+ +SK
Sbjct: 182 EDKEKKPDWSKKGDSK 197

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	503
FB|FBgn0004028	269	wupA "wings up A" [Drosophila	0.304	0.568	0.5	2.1e-36
WB|WBGene00006586	194	tni-4 [Caenorhabditis elegans	0.292	0.757	0.38	7.2e-20
WB|WBGene00006585	260	tni-3 [Caenorhabditis elegans	0.290	0.561	0.312	1.8e-14
WB|WBGene00006584	250	tni-1 [Caenorhabditis elegans	0.290	0.584	0.32	2.3e-14
WB|WBGene00006764	242	unc-27 [Caenorhabditis elegans	0.282	0.586	0.317	3.8e-14
MGI|MGI:98783	211	Tnni3 "troponin I, cardiac 3"	0.214	0.511	0.312	1.2e-10
RGD|62052	211	Tnni3 "troponin I type 3 (card	0.214	0.511	0.312	2.5e-10
ZFIN|ZDB-GENE-030616-266	181	tnni1a "troponin I, skeletal,	0.190	0.530	0.323	3.6e-09
UNIPROTKB|K7EN02	185	TNNI3 "Troponin I, cardiac mus	0.212	0.578	0.297	5.9e-09
ZFIN|ZDB-GENE-090312-198	179	si:dkey-206m15.8 "si:dkey-206m	0.212	0.597	0.279	5.9e-09

FB|FBgn0004028 wupA "wings up A" [Drosophila melanogaster (taxid:7227)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 77/154 (50%), Positives = 103/154 (66%)

Query:    46 ASGARR-KKGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDERCGEPKDTDDM 104
             AS A++ KKGFMTP                               +I+ERCG P++  D 
Sbjct:    89 ASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRIIEERCGSPRNLSDA 148

Query:   105 AEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVS 164
             +E E+ ++C+EY++R+Y  E  K++L+ E+  KD+EI +L  QVNDLRGKFV+P LKKVS
Sbjct:   149 SEGELQEICEEYYERMYICEGQKWDLEYEVRKKDWEINDLNAQVNDLRGKFVKPALKKVS 208

Query:   165 KYENKFAKLQKKAAEFNFRSQLKAVKKREFSMED 198
             KYENKFAKLQKKAAEFNFR+QLK VKK+EF++E+
Sbjct:   209 KYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEE 242

GO:0046716 "muscle cell homeostasis" evidence=IMP

GO:0007399 "nervous system development" evidence=NAS;IMP

GO:0007517 "muscle organ development" evidence=NAS;IMP

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0005861 "troponin complex" evidence=IEA;NAS

GO:0003779 "actin binding" evidence=NAS

GO:0005523 "tropomyosin binding" evidence=NAS

GO:0045214 "sarcomere organization" evidence=IMP

GO:0030239 "myofibril assembly" evidence=IMP

GO:0048738 "cardiac muscle tissue development" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0000280 "nuclear division" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

WB|WBGene00006586 tni-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 57/150 (38%), Positives = 81/150 (54%)

Query:    50 RRKKGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDERCGEPKDTDDMAEDEI 109
             + KKGF+TP                               ++ ER     D D+  ED++
Sbjct:    34 KAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQRILQERIIPLPDLDN--EDDL 91

Query:   110 GDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENK 169
               +  E  +R+ +LE+  Y++   +  KDFEI EL   VNDLRGKFV+P LKKVSK E K
Sbjct:    92 EAVYDEIRERLIDLESENYDVSYIVRQKDFEINELTIAVNDLRGKFVKPTLKKVSKTEGK 151

Query:   170 FAKLQKK-AAEFNFRSQLKAVKKREFSMED 198
             F KL+KK A + +FR+QLK V K EF++++
Sbjct:   152 FDKLKKKEATKVDFRAQLKVVDKNEFALDE 181

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0043050 "pharyngeal pumping" evidence=IMP

GO:0030017 "sarcomere" evidence=IDA

GO:0030172 "troponin C binding" evidence=IPI

WB|WBGene00006585 tni-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 46/147 (31%), Positives = 71/147 (48%)

Query:    46 ASGARRKKGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDERCGEPKDTDDMA 105
             A    +KKGF+TP                                + +R     D D + 
Sbjct:    43 AKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQKTLQQRTIPLPDVDSIN 102

Query:   106 ED-EIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVS 164
             +  ++  + ++ + R+  LE  K++++  +   + EI +L  QVNDLRGKFV+P LKKVS
Sbjct:   103 DQGQLLKIYEDMFARVCALEEEKFDINFGVSQTEAEINQLTIQVNDLRGKFVKPTLKKVS 162

Query:   165 KYENKFAKLQKKAAEFNFRSQLKAVKK 191
             KY+NKF    +   + NFR+ LK VKK
Sbjct:   163 KYDNKFKSSGEVKEKSNFRNNLKVVKK 189

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0030421 "defecation" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040032 "post-embryonic body morphogenesis" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0006936 "muscle contraction" evidence=IMP

GO:0030017 "sarcomere" evidence=IDA

GO:0030172 "troponin C binding" evidence=IPI

GO:0030016 "myofibril" evidence=IDA

WB|WBGene00006584 tni-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 48/150 (32%), Positives = 73/150 (48%)

Query:    46 ASGARRKKGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDERCGEPKDTDDMA 105
             A   ++KKGF+TP                               V+ ER     + D + 
Sbjct:    43 AGQKKQKKGFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSID 102

Query:   106 ED-EIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVS 164
             +  ++  +  + + R+ NLE  KY+++      +  I +L  +VNDLRGKFV+P LKKVS
Sbjct:   103 DHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVNDLRGKFVKPSLKKVS 162

Query:   165 KYENKFAKL---QKKAAEFNFRSQLKAVKK 191
             KY+NKF K+   +K+    N R+ LK VKK
Sbjct:   163 KYDNKFKKMAEAKKEDGSKNLRNNLKTVKK 192

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0007409 "axonogenesis" evidence=IMP

GO:0030421 "defecation" evidence=IMP

GO:0043057 "backward locomotion" evidence=IMP

GO:0005862 "muscle thin filament tropomyosin" evidence=IDA

GO:0030172 "troponin C binding" evidence=IPI

WB|WBGene00006764 unc-27 [Caenorhabditis elegans (taxid:6239)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 46/145 (31%), Positives = 69/145 (47%)

Query:    50 RRKKGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDERCGEPKDTDDMAED-E 108
             + KKGF+TP                                + +R     + D + +  +
Sbjct:    35 KAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKALADRTISLPNVDSIDDKGQ 94

Query:   109 IGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYEN 168
             +  +  + W R+  LE  KY+++  +   + EI  L  +VNDLRGKFV+P LKKVSKY+N
Sbjct:    95 LEKIYNDLWARLTQLEEEKYDINYVVSQTEAEINSLTIEVNDLRGKFVKPSLKKVSKYDN 154

Query:   169 KFAKL--QKKAAEFNFRSQLKAVKK 191
             KF K    K   + +FR+ LK VKK
Sbjct:   155 KFKKSGESKAGTKEDFRANLKIVKK 179

GO:0040011 "locomotion" evidence=IMP

GO:0030421 "defecation" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0030017 "sarcomere" evidence=IDA

GO:0030172 "troponin C binding" evidence=IPI

MGI|MGI:98783 Tnni3 "troponin I, cardiac 3" [Mus musculus (taxid:10090)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 35/112 (31%), Positives = 64/112 (57%)

Query:    90 VIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVN 149
             V+  RC +P + D +  +E+ DLC++   R+  ++  +Y+++ ++     EI +L +++ 
Sbjct:    76 VLRTRC-QPLELDGLGFEELQDLCRQLHARVDKVDEERYDVEAKVTKNITEIADLTQKIY 134

Query:   150 DLRGKFVRPILKKVSKYENKF--AKLQKKAAE-FNFRSQLKAVKKREFSMED 198
             DLRGKF RP L++V    +    A L  +A E  + R+ LK VKK +   E+
Sbjct:   135 DLRGKFKRPTLRRVRISADAMMQALLGTRAKESLDLRAHLKQVKKEDIEKEN 186

GO:0001570 "vasculogenesis" evidence=IDA

GO:0001980 "regulation of systemic arterial blood pressure by ischemic conditions" evidence=IMP

GO:0003779 "actin binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005861 "troponin complex" evidence=ISO

GO:0006874 "cellular calcium ion homeostasis" evidence=IDA;IMP

GO:0006937 "regulation of muscle contraction" evidence=IDA

GO:0006940 "regulation of smooth muscle contraction" evidence=ISO

GO:0006941 "striated muscle contraction" evidence=IDA

GO:0007507 "heart development" evidence=IDA

GO:0019855 "calcium channel inhibitor activity" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030016 "myofibril" evidence=ISO

GO:0030017 "sarcomere" evidence=ISO;IDA

GO:0030172 "troponin C binding" evidence=ISO

GO:0031014 "troponin T binding" evidence=ISO

GO:0032780 "negative regulation of ATPase activity" evidence=ISO

GO:0043292 "contractile fiber" evidence=ISO

GO:0048306 "calcium-dependent protein binding" evidence=ISO

GO:0055010 "ventricular cardiac muscle tissue morphogenesis" evidence=ISO

GO:0060047 "heart contraction" evidence=ISO

GO:0060048 "cardiac muscle contraction" evidence=ISO

RGD|62052 Tnni3 "troponin I type 3 (cardiac)" [Rattus norvegicus (taxid:10116)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 35/112 (31%), Positives = 63/112 (56%)

Query:    90 VIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVN 149
             V+  RC +P   D +  +E+ DLC++   R+  ++  +Y+++ ++     EI +L +++ 
Sbjct:    76 VLSTRC-QPLVLDGLGFEELQDLCRQLHARVDKVDEERYDVEAKVTKNITEIADLTQKIY 134

Query:   150 DLRGKFVRPILKKVSKYENKF--AKLQKKAAE-FNFRSQLKAVKKREFSMED 198
             DLRGKF RP L++V    +    A L  +A E  + R+ LK VKK +   E+
Sbjct:   135 DLRGKFKRPTLRRVRISADAMMQALLGTRAKESLDLRAHLKQVKKEDIEKEN 186

GO:0001570 "vasculogenesis" evidence=IEA;ISO

GO:0001980 "regulation of systemic arterial blood pressure by ischemic conditions" evidence=IEA;ISO

GO:0003779 "actin binding" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005861 "troponin complex" evidence=ISO;TAS

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA;ISO

GO:0006937 "regulation of muscle contraction" evidence=ISO;TAS

GO:0006940 "regulation of smooth muscle contraction" evidence=IMP

GO:0006941 "striated muscle contraction" evidence=ISO

GO:0007507 "heart development" evidence=ISO

GO:0019855 "calcium channel inhibitor activity" evidence=IEA;ISO

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0019904 "protein domain specific binding" evidence=IEA;ISO

GO:0030016 "myofibril" evidence=IDA

GO:0030017 "sarcomere" evidence=ISO;IDA

GO:0030172 "troponin C binding" evidence=IEA;ISO

GO:0031014 "troponin T binding" evidence=IEA;ISO

GO:0032780 "negative regulation of ATPase activity" evidence=IEA;ISO

GO:0043292 "contractile fiber" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IEA;ISO

GO:0055010 "ventricular cardiac muscle tissue morphogenesis" evidence=IEA;ISO

GO:0060047 "heart contraction" evidence=ISO

GO:0060048 "cardiac muscle contraction" evidence=ISO;IDA;IMP

ZFIN|ZDB-GENE-030616-266 tnni1a "troponin I, skeletal, slow a" [Danio rerio (taxid:7955)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 32/99 (32%), Positives = 54/99 (54%)

Query:    98 PKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVR 157
             P  T  M+  E+  LCQE   +I  ++  +Y+++ +++L   EI +L  +V DLRGKF R
Sbjct:    46 PLQTQSMSFSELQGLCQELHAKIDLVDEERYDIEAKVLLNKREIKDLNIKVLDLRGKFKR 105

Query:   158 PILKKVSKYENKFAKL---QKKAAEFNFRSQLKAVKKRE 193
             P L++V    +   +     K     + R+ LK+VKK +
Sbjct:   106 PPLRRVRVSADAILRSLLGSKHKVSMDLRANLKSVKKED 144

GO:0005861 "troponin complex" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|K7EN02 TNNI3 "Troponin I, cardiac muscle" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 33/111 (29%), Positives = 61/111 (54%)

Query:    91 IDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVND 150
             +  RC +P +   +   E+ DLC++   R+  ++  +Y+++ ++     EI +L +++ D
Sbjct:    51 LSTRC-QPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFD 109

Query:   151 LRGKFVRPILKKVSKYENKF--AKLQKKAAE-FNFRSQLKAVKKREFSMED 198
             LRGKF RP L++V    +    A L  +A E  + R+ LK VKK +   E+
Sbjct:   110 LRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTEKEN 160

GO:0005861 "troponin complex" evidence=IEA

ZFIN|ZDB-GENE-090312-198 si:dkey-206m15.8 "si:dkey-206m15.8" [Danio rerio (taxid:7955)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 31/111 (27%), Positives = 65/111 (58%)

Query:    91 IDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVND 150
             ++ER   P     ++  E+ +LC+E  ++I +++  +Y+L+ ++   + EI  L +++ D
Sbjct:    45 LNERV-PPLKLSGLSAQELQELCKELHRKIDDVDEARYDLEIKVAKNEIEIQTLTQKIWD 103

Query:   151 LRGKFVRPILKKVSK-YENKFAKL--QKKAAEFNFRSQLKAVKKREFSMED 198
             ++G   R  LK+V K +++ F  L   K +++ +F++ LK VKK E   E+
Sbjct:   104 MKGSKQRTKLKRVKKSHDSMFGALTESKMSSKADFKANLKTVKKEEEKKEE 154

GO:0005861 "troponin complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O44572	TNNI4_CAEEL	No assigned EC number	0.5156	0.3658	0.9484	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	503
pfam00992	131	pfam00992, Troponin, Troponin	2e-34
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-18
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-17
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-17
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-16
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-16
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-16
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-15
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-15
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	7e-15
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	8e-15
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-14
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-14
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-14
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-14
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-14
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-14
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-13
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-13
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-13
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-12
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-12
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-12
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	6e-12
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-12
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-11
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-11
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-11
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-11
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-11
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-11
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-11
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-11
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-10
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-10
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	6e-10
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	6e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-09
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	2e-09
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-09
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-08
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	1e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-08
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	1e-08
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	1e-08
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-08
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	2e-08
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	2e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-08
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	3e-08
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-08
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	4e-08
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	5e-08
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	5e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	7e-08
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	7e-08
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	8e-08
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-07
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	2e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-07
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	2e-07
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-07
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	3e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-07
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	3e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-07
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	4e-07
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	4e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-07
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	6e-07
PRK13875	440	PRK13875, PRK13875, conjugal transfer protein TrbL	6e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	7e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	8e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-07
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	9e-07
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	9e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	9e-07
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-06
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	1e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-06
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	1e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-06
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	2e-06
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	3e-06
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-06
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	5e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	6e-06
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	6e-06
PLN03237	1465	PLN03237, PLN03237, DNA topoisomerase 2; Provision	6e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	7e-06
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-06
PRK13875	440	PRK13875, PRK13875, conjugal transfer protein TrbL	9e-06
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	9e-06
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	1e-05
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	1e-05
PRK05996	423	PRK05996, motB, flagellar motor protein MotB; Vali	1e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	1e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	2e-05
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	2e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	2e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	2e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-05
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	3e-05
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	3e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-05
PRK05996	423	PRK05996, motB, flagellar motor protein MotB; Vali	3e-05
PHA03264	416	PHA03264, PHA03264, envelope glycoprotein D; Provi	3e-05
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	3e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	4e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	4e-05
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-05
PRK05996	423	PRK05996, motB, flagellar motor protein MotB; Vali	6e-05
PRK12372	413	PRK12372, PRK12372, ribonuclease III; Reviewed	6e-05
PRK05996	423	PRK05996, motB, flagellar motor protein MotB; Vali	7e-05
PRK14666	694	PRK14666, uvrC, excinuclease ABC subunit C; Provis	7e-05
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	7e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	8e-05
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	8e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	9e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	1e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	1e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	1e-04
PRK12372	413	PRK12372, PRK12372, ribonuclease III; Reviewed	1e-04
PRK12372	413	PRK12372, PRK12372, ribonuclease III; Reviewed	1e-04
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	1e-04
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	1e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	2e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	2e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	2e-04
PRK14666	694	PRK14666, uvrC, excinuclease ABC subunit C; Provis	2e-04
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	3e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	3e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	3e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	4e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-04
PRK05996	423	PRK05996, motB, flagellar motor protein MotB; Vali	4e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	4e-04
PRK14666	694	PRK14666, uvrC, excinuclease ABC subunit C; Provis	4e-04
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	4e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	4e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-04
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	5e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	5e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	5e-04
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	5e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	6e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	6e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	6e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	6e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	6e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	6e-04
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	6e-04
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	6e-04
PHA03321	694	PHA03321, PHA03321, tegument protein VP11/12; Prov	6e-04
PRK07133	725	PRK07133, PRK07133, DNA polymerase III subunits ga	6e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	6e-04
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	7e-04
PRK12373	400	PRK12373, PRK12373, NADH dehydrogenase subunit E;	8e-04
pfam08764	282	pfam08764, Coagulase, Staphylococcus aureus coagul	8e-04
PTZ00429	746	PTZ00429, PTZ00429, beta-adaptin; Provisional	8e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	9e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.001
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.001
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.001
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.001
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	0.001
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.001
PHA03264	416	PHA03264, PHA03264, envelope glycoprotein D; Provi	0.001
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.001
PRK14666	694	PRK14666, uvrC, excinuclease ABC subunit C; Provis	0.001
PRK14666	694	PRK14666, uvrC, excinuclease ABC subunit C; Provis	0.001
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.001
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.001
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
COG1293	564	COG1293, COG1293, Predicted RNA-binding protein ho	0.001
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	0.001
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	0.001
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	0.001
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	0.001
PRK01973	271	PRK01973, PRK01973, septum formation inhibitor; Re	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.002
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.002
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.002
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.002
pfam04652	315	pfam04652, DUF605, Vta1 like	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PRK05996	423	PRK05996, motB, flagellar motor protein MotB; Vali	0.002
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.002
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.002
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.002
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.002
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.002
PRK12372	413	PRK12372, PRK12372, ribonuclease III; Reviewed	0.002
PRK12373	400	PRK12373, PRK12373, NADH dehydrogenase subunit E;	0.002
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.002
PRK13419	342	PRK13419, PRK13419, F0F1 ATP synthase subunit A; P	0.002
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.002
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	0.002
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.003
pfam04652	315	pfam04652, DUF605, Vta1 like	0.003
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.003
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	0.003
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.003
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.003
PRK12373	400	PRK12373, PRK12373, NADH dehydrogenase subunit E;	0.003
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	0.003
PRK00030	292	PRK00030, minC, septum formation inhibitor; Provis	0.003
TIGR02557	201	TIGR02557, HpaP, type III secretion protein HpaP	0.003
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.004
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.004
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.004
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.004
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.004
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.004
PRK14666	694	PRK14666, uvrC, excinuclease ABC subunit C; Provis	0.004
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	0.004
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	0.004
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.004
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.004
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.004
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.004
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	0.004

>gnl|CDD|201540 pfam00992, Troponin, Troponin

 Score =  125 bits (317), Expect = 2e-34
 Identities = 51/133 (38%), Positives = 79/133 (59%), Gaps = 5/133 (3%)

Query: 61  KKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRI 120
           K+ L+ LL  KAAEEL+ EQ ++  E+++ + ERC   + +   AE +  +LC++   RI
Sbjct: 1   KRHLKSLLLLKAAEELEFEQRKKEEEKEKYLAERCPPLRLSLSRAELQ--ELCKKLHARI 58

Query: 121 YNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKL---QKKA 177
             L+  +Y+++ ++  KD EI +L K+VNDLRGKF +P LKKV K  +   K     K  
Sbjct: 59  DRLDEERYDIEEKVAKKDKEIEDLKKKVNDLRGKFKKPTLKKVRKSADAMLKALLGSKHK 118

Query: 178 AEFNFRSQLKAVK 190
              + R+ LK VK
Sbjct: 119 VSMDLRANLKQVK 131

Troponin (Tn) contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). this Pfam contains members of the TnT subunit. Troponin is a complex of three proteins, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). The troponin complex regulates Ca++ induced muscle contraction. This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin. Length = 131

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 87.3 bits (217), Expect = 5e-18
 Identities = 49/176 (27%), Positives = 55/176 (31%), Gaps = 3/176 (1%)

Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
                       P  E   PA  A PA  A PA     A  A  +    P   AP     
Sbjct: 596 GGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPK 655

Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPA---EAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
             A    +  G   P   G       PPA    AP    GA  A+ APAPA   PA  A+
Sbjct: 656 HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQAD 715

Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
                        +   PA   P P       PP  A      PP  AP   +APA
Sbjct: 716 DPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPA 771

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 85.8 bits (213), Expect = 1e-17
 Identities = 77/311 (24%), Positives = 93/311 (29%), Gaps = 33/311 (10%)

Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSP 278
           P P P P P S    +        P        P       PEP   P         P+ 
Sbjct: 433 PAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAA 492

Query: 279 VTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSAT-----PQPLLKSVVKDTLR--- 330
               P           +A+      +++  +      T     P+  +  V  DTL    
Sbjct: 493 APAAPAAPAAPAGADDAATLRERWPEILAAVPKRSRKTWAILLPEATVLGVRGDTLVLGF 552

Query: 331 ------------------RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGA 372
                               A  EE  GG+ + E    A   P    A       PA   
Sbjct: 553 STGGLARRFASPGNAEVLVTALAEEL-GGDWQVE----AVVGPAPGAAGGEGPPAPASSG 607

Query: 373 PPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
           PP E A PA  A PA  A PA    AA  APA  +  P P   AP       A    +  
Sbjct: 608 PPEEAARPAAPAAPAAPAAPAPAGAAA--APAEASAAPAPGVAAPEHHPKHVAVPDASDG 665

Query: 433 GAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
           G   PA+   A PA   P    A PA  A A PA+ APAP A        D     P   
Sbjct: 666 GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAA 725

Query: 493 AEAPPAESAPA 503
             A     A  
Sbjct: 726 QGASAPSPAAD 736

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 83.5 bits (207), Expect = 8e-17
 Identities = 43/176 (24%), Positives = 48/176 (27%), Gaps = 2/176 (1%)

Query: 330 RRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 389
              A         P     APA G    E  P     P A        A     AP A  
Sbjct: 623 APAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPP 682

Query: 390 APPAEGAPA--AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
             PA  APA  A  APA PA  P     A  A+ P       A   +          P  
Sbjct: 683 PAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742

Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
             P     P    A  PP        A  A  PP+     E     +AP  +    
Sbjct: 743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDR 798

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 81.5 bits (201), Expect = 4e-16
 Identities = 66/295 (22%), Positives = 85/295 (28%), Gaps = 20/295 (6%)

Query: 211  PESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEE 270
            P +  + +P P P P P      S        P       P  +   P     P P   +
Sbjct: 2561 PAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPD 2620

Query: 271  IPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLR 330
                 P P +P+P           +   P    D                  +  + +  
Sbjct: 2621 THAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDD----------------PAPGRVSRP 2664

Query: 331  RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
            R+A           P        A P  G+  +   PP     P         A P    
Sbjct: 2665 RRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPG 2724

Query: 391  PPAEG--APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
            P A    +PA   APAPPA   P     P   A P      A   APAP     A P   
Sbjct: 2725 PAAARQASPALPAAPAPPA--VPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRR 2782

Query: 449  APRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
              R   A  +E   + P+   PA P     AP A  PPA        PP  + P 
Sbjct: 2783 LTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT 2837

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 80.4 bits (199), Expect = 6e-16
 Identities = 51/145 (35%), Positives = 54/145 (37%), Gaps = 2/145 (1%)

Query: 359 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPP 418
            A   E    A           A GA     A P+  A A   APAP A  P  A    P
Sbjct: 366 SASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAP 425

Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
           A AP PA  APA   AP    G        +P    AP A+ APAP A   P      AP
Sbjct: 426 AAAPQPAP-APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP 484

Query: 479 APPADAPPAEPAPPAEAPPAESAPA 503
            P A AP A PA PA       A  
Sbjct: 485 -PAAPAPAAAPAAPAAPAAPAGADD 508

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 80.4 bits (199), Expect = 7e-16
 Identities = 56/137 (40%), Positives = 58/137 (42%), Gaps = 4/137 (2%)

Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
                         PA  AP A  A PA    PA  APAA  APAP A  P PA    PA
Sbjct: 380 RLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAA-PQPAPAPAPA 438

Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
            APP   G   A GAP+P     AP A+ AP    AP    APAP    APAP A  APA
Sbjct: 439 PAPPSPAGNAPAGGAPSPPPA-AAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAA--APA 495

Query: 480 PPADAPPAEPAPPAEAP 496
            PA       A  A   
Sbjct: 496 APAAPAAPAGADDAATL 512

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 80.0 bits (198), Expect = 1e-15
 Identities = 60/148 (40%), Positives = 65/148 (43%), Gaps = 2/148 (1%)

Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPP 412
            A   E    A           A GA     A P+  A     APA   A    A  P P
Sbjct: 366 SASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAP 425

Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP 472
           A    PA AP PA  AP +    APA GAP+PP   AP A+ AP    AP P A  APAP
Sbjct: 426 AAAPQPAPAPAPAP-APPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP 484

Query: 473 PAEGAPAPPADAPPAEPAPPAEAPPAES 500
           PA  APA    A PA PA PA A  A +
Sbjct: 485 PAAPAPAAAP-AAPAAPAAPAGADDAAT 511

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 78.5 bits (194), Expect = 3e-15
 Identities = 49/135 (36%), Positives = 50/135 (37%), Gaps = 3/135 (2%)

Query: 348 EAPADGAPPA-EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP 406
           E        A     PA  AP A  A PA    PA  AP A  AP    AP    APAP 
Sbjct: 379 ERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPA 438

Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG-APRAEGAPPAEGAPAPP 465
              PP   G  PA   P    A A    PAPA  A   P    AP    AP    APA P
Sbjct: 439 PA-PPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAP 497

Query: 466 AEGAPAPPAEGAPAP 480
           A  A    A+ A   
Sbjct: 498 AAPAAPAGADDAATL 512

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 77.2 bits (190), Expect = 7e-15
 Identities = 57/176 (32%), Positives = 59/176 (33%), Gaps = 8/176 (4%)

Query: 329 LRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 388
           LR  A      GG   P        A P     PA  AP A  A PA  APPA  A    
Sbjct: 358 LRMLAFRPGQSGGGAGP----ATAAAAPVAQPAPAAAAPAA--AAPAPAAPPAAPAAAPA 411

Query: 389 GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
            A  A    AA    +P  E    A  A           APA   APA A    A     
Sbjct: 412 AAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRP 471

Query: 449 APRAEGAPPAEGAPAPPAEGAP--APPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
              A  A PA  APA     A    PP E  P   A   PA+P        AES P
Sbjct: 472 VAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP 527

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 76.8 bits (189), Expect = 8e-15
 Identities = 57/163 (34%), Positives = 59/163 (36%), Gaps = 4/163 (2%)

Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA 402
           P     APA        AP A  A  A  A PA  +P  E    A  A       A   A
Sbjct: 392 PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451

Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP--AEG 460
           PAP A  P  A     A   P A  A AA    APA  APAP  +  P  E  PP  A  
Sbjct: 452 PAPAA-APAAAARPAAAGPRPVAAAAAAAPARAAPA-AAPAPADDDPPPWEELPPEFASP 509

Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
           APA P        AE  P P    P       A AP A  AP 
Sbjct: 510 APAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPR 552

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 76.5 bits (188), Expect = 1e-14
 Identities = 50/147 (34%), Positives = 51/147 (34%), Gaps = 1/147 (0%)

Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
              P    A P     PA  AP A    PA        APAA  A    A  P     AP
Sbjct: 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP 430

Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
            A A      A    GAPAPA    A PA  A  A   P    A A  A    AP A  A
Sbjct: 431 EALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPA 490

Query: 478 PAPPADAPPAE-PAPPAEAPPAESAPA 503
           PA     P  E P   A   PA+   A
Sbjct: 491 PADDDPPPWEELPPEFASPAPAQPDAA 517

Length = 700

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 76.4 bits (189), Expect = 1e-14
 Identities = 33/161 (20%), Positives = 40/161 (24%), Gaps = 3/161 (1%)

Query: 344 KPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP 403
            P    P    PP   AP A     A               PP   AP    A       
Sbjct: 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419

Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
           +         + A  A     +E A A+   P  +          AP A    PA+    
Sbjct: 420 SQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAY 479

Query: 464 PPAEGAPAPPAEGAPAPPADAPPA---EPAPPAEAPPAESA 501
                 P    +   A P     A   E  P   A  A  A
Sbjct: 480 RWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEA 520

Length = 647

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 52/127 (40%), Positives = 53/127 (41%), Gaps = 5/127 (3%)

Query: 369 AEGAPPAEGAPPAEGAPPAEGA-PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEG 427
           AE A PAE   PA     A  A P A+ A A   A AP A    PA  APPA APP    
Sbjct: 370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPA--APPAAAPPAPVA 427

Query: 428 APAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
           APAA    A    APA  A     A  A  A    A P   AP P    A   PA AP A
Sbjct: 428 APAAAAPAAAPAAAPAAVA--LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAA 485

Query: 488 EPAPPAE 494
               P E
Sbjct: 486 ARLTPTE 492

Length = 618

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 74.9 bits (184), Expect = 3e-14
 Identities = 47/181 (25%), Positives = 54/181 (29%), Gaps = 9/181 (4%)

Query: 330 RRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 389
              A+              A    AP A  A  A  A PA  +P  E    A  A     
Sbjct: 385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGP 444

Query: 390 APPAEGAPAAEGAPAP-------PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
                 APA   APA               A  A PA A P A  APA +  P   E  P
Sbjct: 445 GGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPP 504

Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
              +    + + AP    A + P      P        P  AP A PAP A A       
Sbjct: 505 EFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP--APAAAPAPRAAAATEPVVA 562

Query: 503 A 503
            
Sbjct: 563 P 563

Length = 700

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 74.8 bits (184), Expect = 4e-14
 Identities = 43/129 (33%), Positives = 44/129 (34%), Gaps = 2/129 (1%)

Query: 374 PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEG 433
           PA  A  A  A     A P   APAA  AP   A   P    AP A A  PA    AA  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAA--APVAQAAAAPAPAAAPAAAASAPAAPPAAAPP 423

Query: 434 APAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
           AP  A  A AP A  A        A   PA  A    A P   AP P   +    PA   
Sbjct: 424 APVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483

Query: 494 EAPPAESAP 502
            A       
Sbjct: 484 AAARLTPTE 492

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 74.6 bits (183), Expect = 6e-14
 Identities = 76/294 (25%), Positives = 92/294 (31%), Gaps = 20/294 (6%)

Query: 223  PEPEPESATDASDVEDGKETPLP-PEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTP 281
            P+  P+SA   + V+D  +   P P    PP    P PP P P P   E  P PP  V P
Sbjct: 2589 PDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648

Query: 282  NPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGG 341
                        VS            +  S      +   +  V                
Sbjct: 2649 PERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTP 2708

Query: 342  EPKPEGEAPADGAPPAEGA--------PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 393
            EP P     A   PP   A        P A   P     P   G P     PP    PPA
Sbjct: 2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA 2768

Query: 394  EGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP----------- 442
               PAA  A  P     P       +    P+   PA   A   A  A            
Sbjct: 2769 PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL 2828

Query: 443  APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
             PP    P A   PP    P+ P  G+ AP  +    PP+ +P A+PA PA  P
Sbjct: 2829 PPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPP 2882

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 73.4 bits (180), Expect = 1e-13
 Identities = 49/159 (30%), Positives = 55/159 (34%), Gaps = 4/159 (2%)

Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP-PAEGAPPAEGAPAAEG 401
            +    APA  +P  E    A  A           AP    AP  A     A   P A  
Sbjct: 416 ARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAA 475

Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
           A A PA   P A  AP  + PPP E  P    +PAPA+   AP       AE  P    A
Sbjct: 476 AAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAG---WVAESIPDPATA 532

Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
               A    AP    APAP A A       P     + S
Sbjct: 533 DPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571

Length = 700

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 73.3 bits (180), Expect = 1e-13
 Identities = 52/188 (27%), Positives = 61/188 (32%), Gaps = 14/188 (7%)

Query: 328 TLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 387
           TL R  + E    G   P G  PA          P   A  A GA          GA  A
Sbjct: 351 TLLRMLAFEPAVTGGGAPGGGVPA--RVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGA 408

Query: 388 EGAPPAEGAPAAEGAPAPPAEGPP---------PAEGAPPAEAPPPAEGAPAAEGAPAPA 438
             AP A  A AA  A APPA   P          A+G  P  A   A  +  +      A
Sbjct: 409 ALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDA 468

Query: 439 EGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP---APPAEGAPAPPADAPPAEPAPPAEA 495
           +      +  AP ++  P A   PAP A             A AP A +    PA  A  
Sbjct: 469 QPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP 528

Query: 496 PPAESAPA 503
            P    P 
Sbjct: 529 APEARPPT 536

Length = 830

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 71.3 bits (175), Expect = 5e-13
 Identities = 44/117 (37%), Positives = 46/117 (39%), Gaps = 2/117 (1%)

Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
           AE A PAE    A    A PA  P     A PA A  PA  A A    PA A  AP    
Sbjct: 370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP 429

Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
             A     AP A  A    A   PA  A    A P    P EPA  + AP   +APA
Sbjct: 430 AAA-APAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAP-EPAVASAAPAPAAAPA 484

Length = 618

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 69.9 bits (171), Expect = 1e-12
 Identities = 55/173 (31%), Positives = 60/173 (34%), Gaps = 9/173 (5%)

Query: 340 GGEPKPEGEAPADG--APPAEGAPPAEGAPPAEGAPPAEGAPPA--EGAPPAEGAPPAEG 395
           G   +  G  PA G  A  A GA          GA  A  AP A    A     APPA  
Sbjct: 371 GVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAP 430

Query: 396 APAAEGAPA-PPAEGPPPAEGAPPAEAPP-PAEGAPAAEGAPAPAEG-APAPPAEGAPRA 452
           AP A        A+G  P      A A          A+         APA  A      
Sbjct: 431 APPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAF 490

Query: 453 EGAPPAEG-APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP-PAESAPA 503
           E AP A   + A PA    A     A    A A  A PAP A  P PA +APA
Sbjct: 491 EPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPA 543

Length = 830

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 69.1 bits (170), Expect = 2e-12
 Identities = 31/148 (20%), Positives = 36/148 (24%), Gaps = 2/148 (1%)

Query: 356 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEG 415
           P    PP   AP A     A               PP   AP    A   P         
Sbjct: 366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAA 425

Query: 416 APPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
               +    A  A  +E  PA A  A    +     A   P        PA+        
Sbjct: 426 RQQLQRAQGATKAKKSE--PAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKA 483

Query: 476 GAPAPPADAPPAEPAPPAEAPPAESAPA 503
             P      P A P    +A   E  P 
Sbjct: 484 TNPVEVKKEPVATPKALKKALEHEKTPE 511

Length = 647

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 68.8 bits (169), Expect = 3e-12
 Identities = 35/90 (38%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 374 PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEG 433
           P   A P   A  A  A  A  A  A  APA PA  PP A  A PA  P PA  A AA  
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA--AAPAAPPKPAAAAAAAAA 95

Query: 434 APAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
             AP   A A     A   +   P  GA A
Sbjct: 96  PAAPPAAAAAAAPAAAAVEDEVTPLRGAAA 125

Length = 1228

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 68.0 bits (166), Expect = 6e-12
 Identities = 56/187 (29%), Positives = 61/187 (32%), Gaps = 29/187 (15%)

Query: 340 GGEPKPEGEAPADG----APPAEGAPPAEG------APPAEGAPPAEGAPPAEGAPPAEG 389
           G    P+  A A      APPA  APPA        A      P    A  +  +   E 
Sbjct: 407 GAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDER 466

Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAP---APAEGAPAPPA 446
                    +  APA  A      E AP A AP  A  A   +      A  E APA  A
Sbjct: 467 DAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAA 526

Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAP----------------PAEGAPAPPADAPPAEPA 490
             AP A    PA  APA  A GA A                     A A PA AP A P 
Sbjct: 527 PPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPK 586

Query: 491 PPAEAPP 497
           P A    
Sbjct: 587 PAAPRVA 593

Length = 830

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 67.7 bits (166), Expect = 7e-12
 Identities = 49/161 (30%), Positives = 56/161 (34%), Gaps = 3/161 (1%)

Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE-GAPPAEG 389
             A         PK      A        A     AP A    PA  AP A  GA PA+ 
Sbjct: 642 APAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQP 701

Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGA--PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
           AP     P A  A  P A+ P  A+GA  P   A  P    P  +  P PA     PP  
Sbjct: 702 APAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPP 761

Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
            AP    AP A   P+PP+E       +       D   AE
Sbjct: 762 PAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAE 802

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 67.2 bits (165), Expect = 1e-11
 Identities = 31/93 (33%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 351 ADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGP 410
           AD  P +  AP A  A  A  A     AP A+       APPA  APAA   PA  A   
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93

Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
                 P A A      A   +    P  GA A
Sbjct: 94  AAPAAPPAAAAAAAPAAAAVEDEV-TPLRGAAA 125

Length = 1228

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 49/157 (31%), Positives = 55/157 (35%), Gaps = 8/157 (5%)

Query: 349 APADGAPPAEGAPPA--EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP 406
               GA  A  AP A    A     APPA  APPA      + A      PA   A A  
Sbjct: 400 TAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASA 459

Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP--AP 464
                  +  PPA+       +  A  AP  A   PAP A     A  A   +     A 
Sbjct: 460 DSRCDERDAQPPAD---SGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAA 516

Query: 465 PAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
             E APA  A  AP       PA  AP A A  A +A
Sbjct: 517 SREDAPAAAAPPAPEARP-PTPAAAAPAARAGGAAAA 552

Length = 830

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 63/290 (21%), Positives = 77/290 (26%), Gaps = 24/290 (8%)

Query: 228 ESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELW 287
           E A        G            P             P V  +     + + P      
Sbjct: 359 EPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAA- 417

Query: 288 LYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEG 347
                   A  P +             A           +      S  +    +P  + 
Sbjct: 418 ---AAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADS 474

Query: 348 EAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPA 407
            + +  A  A      E AP A     A  A   +   PA  A   E APAA   PAP A
Sbjct: 475 GSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPA--AASREDAPAAAAPPAPEA 532

Query: 408 EGPPPAEGAPPAEAPPPA---------------EGAPAAEGAPAPAEGAPAPPAEGAPRA 452
             P PA  AP A A   A               +    A  A  PA    A P   APR 
Sbjct: 533 RPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRV 592

Query: 453 EGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
               P   A A       APP   A A  A      P P  + PP +  P
Sbjct: 593 AVQVPTPRARA---ATGDAPPNGAARAEQAAESRGAPPPWEDIPPDDYVP 639

Length = 830

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 66.5 bits (163), Expect = 2e-11
 Identities = 33/88 (37%), Positives = 35/88 (39%)

Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
           P +  AP A A   A  A A   APA    A   PA  A  A  APP   A A  A    
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 471 APPAEGAPAPPADAPPAEPAPPAEAPPA 498
           APPA  A A PA A   +   P     A
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTPLRGAAA 125

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 66.1 bits (162), Expect = 2e-11
 Identities = 28/80 (35%), Positives = 29/80 (36%)

Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
           P       AA  A A A  APA        A  AP    A AP A   PA  A  A AP 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 482 ADAPPAEPAPPAEAPPAESA 501
           A    A  A PA A   +  
Sbjct: 98  APPAAAAAAAPAAAAVEDEV 117

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 44/119 (36%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
           PA  A  A  A      PA P    P A     A A P    APAA  +   A  A APP
Sbjct: 366 PAAAAEAAAPAEKK--TPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPP 423

Query: 446 AEGAPRAEGAPPAEGAPAP-PAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
           A  A  A  AP A  A AP     APAPPA+ AP   A      P P   +     A A
Sbjct: 424 APVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAA 482

Length = 618

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 64.9 bits (159), Expect = 5e-11
 Identities = 29/88 (32%), Positives = 32/88 (36%)

Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
             +  AP A  A  A  A     AP A+       APPA  AP A   PAA  A A    
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
            PP A  A    A    +      GA A
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTPLRGAAA 125

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 64.6 bits (158), Expect = 6e-11
 Identities = 54/237 (22%), Positives = 67/237 (28%), Gaps = 22/237 (9%)

Query: 236 VEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVS 295
           V          EG   P    PP     P  P     P  P+P                 
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAA----------- 635

Query: 296 ASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAP 355
                  +          +    P   +V   +        +  G  P     APA  AP
Sbjct: 636 -----PAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAP 690

Query: 356 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAE- 414
            A       GA PA+ AP     PPA  A      PP     A+  +PA     P P E 
Sbjct: 691 AA-----PAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEP 745

Query: 415 GAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
             PP  A  PA+  P    APA A  A  PP+  +   E A     +          
Sbjct: 746 DDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAE 802

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 65.0 bits (158), Expect = 6e-11
 Identities = 61/255 (23%), Positives = 74/255 (29%), Gaps = 31/255 (12%)

Query: 257  PPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSAT 316
            PPPP P PEP      P      TP P            A+   +   L      A  A 
Sbjct: 2701 PPPPPPTPEPA-----PHALVSATPLP---------PGPAAARQASPAL-----PAAPAP 2741

Query: 317  PQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAE 376
            P             R A    T G        APA G P     P       +  + P+ 
Sbjct: 2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSP 2801

Query: 377  GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
              P    A P         A     +PA P   P  A+   P   P P   +    G+ A
Sbjct: 2802 WDP----ADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857

Query: 437  P----AEGAPAPPAEGAPRAEGAPP----AEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
            P        P+      P A   PP    A  A +   E    PP +    P   APP  
Sbjct: 2858 PGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPP 2917

Query: 489  PAPPAEAPPAESAPA 503
               P   PP +  P 
Sbjct: 2918 QPQPQPPPPPQPQPP 2932

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 63.9 bits (156), Expect = 1e-10
 Identities = 36/111 (32%), Positives = 38/111 (34%)

Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
                   APA  AP A  AP    AP    AP    APP+       G  P+    AA 
Sbjct: 403 AAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAP 462

Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
            A   PA    P   A PA APP A    AA  APA              R
Sbjct: 463 SAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLR 513

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 63.7 bits (156), Expect = 1e-10
 Identities = 44/159 (27%), Positives = 51/159 (32%), Gaps = 11/159 (6%)

Query: 342 EPKPEGEAPADGAPPAEG--APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
            P PE E P   A PA    A  A  A  A    PA   PPA  AP    A P     + 
Sbjct: 363 APLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS-APQQAPAVPLPETTSQ 421

Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA-------AEGAPAPAEGAPAPPAEGAPRA 452
             A     +    A  A  +E    +   P        A   PAP+    AP  + A R 
Sbjct: 422 LLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRW 481

Query: 453 EGAPPAEGAPAPPA-EGAPAPPAEGAPAPPADAPPAEPA 490
           +   P E    P A   A     E    P   A  A  A
Sbjct: 482 KATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEA 520

Length = 647

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 63.8 bits (156), Expect = 1e-10
 Identities = 27/79 (34%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 424 PAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
           P   A     A A A  A AP A        A PA   PA  A  AP  PA  A A  A 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAA-PAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 484 APPAEPAPPAEAPPAESAP 502
           A P   A  A    A    
Sbjct: 97  AAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 63.4 bits (155), Expect = 2e-10
 Identities = 33/92 (35%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 361 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAE 420
           P +  AP A  A  A  A     AP A+       AP A  APA P   P PA  A  A 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAP---PKPAAAAAAAA 94

Query: 421 APPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA 452
           AP     A AA    A A      P  GA  A
Sbjct: 95  APAAPPAAAAAAAPAAAAVEDEVTPLRGAAAA 126

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 63.4 bits (155), Expect = 2e-10
 Identities = 37/89 (41%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
           P   A P   A AA  A + PA  P     A PA APP A  APAA   PA A  A A P
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAA-APAAPPKPAAAAAAAAAP 96

Query: 446 AEGAPRAEGAPPAEGAPAP---PAEGAPA 471
           A     A  A PA  A      P  GA A
Sbjct: 97  AAPPAAAAAAAPAAAAVEDEVTPLRGAAA 125

Length = 1228

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 62.6 bits (152), Expect = 3e-10
 Identities = 70/296 (23%), Positives = 93/296 (31%), Gaps = 16/296 (5%)

Query: 219  PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSP 278
            P P PEP P +   A+ +  G   P       P +   P PP     P     P  P  P
Sbjct: 2704 PPPTPEPAPHALVSATPLPPG---PAAARQASPALPAAPAPPAVPAGPATPGGPARPARP 2760

Query: 279  VTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEET 338
             T              +          V  L  +  + P P   +     +   A+    
Sbjct: 2761 PTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP 2820

Query: 339  E----GGEPKPEGEAPADGAPPAEGAPPAE--GAPPAEGAPPAEGAPPAEGA--PPAEGA 390
                 G  P P    P    PP    PP+   G   A G       P    A  P A   
Sbjct: 2821 AASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPAR 2880

Query: 391  PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
            PP         + +  +   PP +   P +   P    P  +  P P +  P PP    P
Sbjct: 2881 PPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQ-PPPPPQPQPPPPPPPRP 2939

Query: 451  RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP----AEPAPPAEAPPAESAP 502
            +   AP  + A A    GA   P  GA  P   A P     +PAP  EAP + + P
Sbjct: 2940 QPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPP 2995

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 62.6 bits (153), Expect = 3e-10
 Identities = 35/99 (35%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
           P +   P A  A  A A      APAA+   APA   PA           AP A   PA 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAA---------APAAPPKPAA 88

Query: 465 PAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
            A  A AP A  A A    A PA  A   E  P   A A
Sbjct: 89  AAAAAAAPAAPPAAAAA--AAPAAAAVEDEVTPLRGAAA 125

Length = 1228

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 66/254 (25%), Positives = 76/254 (29%), Gaps = 47/254 (18%)

Query: 248 GEQPPVEEVPPPPEPEP----EPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSID 303
           G  P      P  +P P           P  PP+     P           +A    +  
Sbjct: 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAA-------AAAARAVAAAP 423

Query: 304 DLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPA 363
                   A++A  Q                              A A G   A    PA
Sbjct: 424 ARRSPAPEALAAARQ------------------------------ASARGPGGAPAPAPA 453

Query: 364 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA-P 422
             A PA  A PA  A        A  A PA  APAA  APA   + PPP E  PP  A P
Sbjct: 454 PAAAPAAAARPA--AAGPRPVAAAAAAAPARAAPAAAPAPAD--DDPPPWEELPPEFASP 509

Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
            PA+   A  G  A +   PA           AP    APAP A  A  P     P P A
Sbjct: 510 APAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP-PRA 568

Query: 483 DAPPAEPAPPAEAP 496
            A         + P
Sbjct: 569 SASGLPDMFDGDWP 582

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 54/236 (22%), Positives = 62/236 (26%), Gaps = 20/236 (8%)

Query: 245 PPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDD 304
           P      PV    P P           P  PP+     P                 +   
Sbjct: 374 PATAAAAPV--AQPAPAAAAPAAAAPAPAAPPAAPAAAPA--------------AAAAAR 417

Query: 305 LVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAE 364
            V    +  S  P+ L  +          +          P   A    A        A 
Sbjct: 418 AVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP-AAAGPRPVAAAA 476

Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
            A PA  AP A  AP  +  PP E  PP   +PA     A PA G        PA A P 
Sbjct: 477 AAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPA-GWVAESIPDPATADPD 535

Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP 480
                 A    A    AP   A   P     PP   A   P       PA  A  P
Sbjct: 536 DAFETLAPAPAAAP--APRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589

Length = 700

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 61.4 bits (150), Expect = 7e-10
 Identities = 30/88 (34%), Positives = 31/88 (35%)

Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
           P   A     A A  A    PA          PA   PAA    AP + A A  A  AP 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
           A  A  A  APA  A      P  GA A
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTPLRGAAA 125

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 60.7 bits (148), Expect = 1e-09
 Identities = 35/92 (38%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 345 PEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
               AP   A  A  A  A  A PA  AP A    P   A PA    PA  A AA    A
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98

Query: 405 PPAEGPPPAEGAPPAEAPPPAE-----GAPAA 431
           PPA     A  A PA A    E     GA AA
Sbjct: 99  PPA----AAAAAAPAAAAVEDEVTPLRGAAAA 126

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 43/139 (30%), Positives = 45/139 (32%), Gaps = 9/139 (6%)

Query: 330 RRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 389
           +  A+ E     E K      A  A PA        A PA  A PA  A     A P   
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEA--AAPAAAPVAQAAAAPAPAAAPAAAASAP--AAPPAA 420

Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
           APPA  A  A  APA       PA         P      A E    P   AP P    A
Sbjct: 421 APPAPVAAPAAAAPA-----AAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA 475

Query: 450 PRAEGAPPAEGAPAPPAEG 468
             A  A PA     P  EG
Sbjct: 476 APAPAAAPAAARLTPTEEG 494

Length = 618

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 59.9 bits (146), Expect = 2e-09
 Identities = 28/83 (33%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
           A  G  +  A     A  A  A AP  A  A A          A AP A   P A  A  
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKP-AAAAAA 92

Query: 458 AEGAPAPPAEGAPAPPAEGAPAP 480
           A    APPA  A A PA  A   
Sbjct: 93  AAAPAAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 36/111 (32%), Positives = 36/111 (32%), Gaps = 3/111 (2%)

Query: 378 APPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
           APPA  AP A   PPA    A     AP AE P P             E   A   APA 
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAE-PAPWLVEHAKRLTAQREQLVARAAAPAA 110

Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
            E     PA  A RA     A       A          A A  ADA  A 
Sbjct: 111 PE--AQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKAR 159

Length = 484

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 58.4 bits (142), Expect = 4e-09
 Identities = 34/110 (30%), Positives = 36/110 (32%), Gaps = 7/110 (6%)

Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAP----PAEGAPRAEGAP 456
            A APPA   P A   PPA AP       A    PAP     A       E       AP
Sbjct: 49  AALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAP 108

Query: 457 PAEGAPAPPAEGAPA---PPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
            A  A AP A    A     A       A AP       A A  A++  A
Sbjct: 109 AAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKA 158

Length = 484

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 57.9 bits (140), Expect = 1e-08
 Identities = 53/299 (17%), Positives = 83/299 (27%), Gaps = 14/299 (4%)

Query: 211 PESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEE 270
           P +      +         A       +           +PP    P    P P      
Sbjct: 153 PAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSP 212

Query: 271 IPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLR 330
           I  +  SP             D  ++S+  S  +         +  P P    +   T  
Sbjct: 213 ISASASSPAPAPGRSAAD---DAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRI 269

Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPA--EGAPPAEGAPPAE 388
            +AS        P P   + +        +P + G+ PA  +P A    +   E +  + 
Sbjct: 270 WEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSST 329

Query: 389 GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE--GAPAPPA 446
            +       AA      P+  P P+   PPA+   P +    +    +PA   G P    
Sbjct: 330 SSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRR 389

Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAPP-------AEGAPAPPADAPPAEPAPPAEAPPA 498
             A  A  A   +     PA      P              P   P  EP P +  PP 
Sbjct: 390 ARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEPWPGSPPPPP 448

Length = 1352

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 22/149 (14%), Positives = 24/149 (16%), Gaps = 4/149 (2%)

Query: 354  APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
                    P     P   A     + P   A       P   A              P  
Sbjct: 860  EAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEV 919

Query: 414  EGAPPAEAPPPAEGAPAAEGAPAPAEGAPA----PPAEGAPRAEGAPPAEGAPAPPAEGA 469
              AP  E P     +  A          P             A        A        
Sbjct: 920  IAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQP 979

Query: 470  PAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
             AP      A        EP       P 
Sbjct: 980  AAPVVAEVAAEVETVTAVEPEVAPAQVPE 1008

Length = 1068

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 28/92 (30%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
           P P    P A AP P    PA    P  A  A  PP E  P  E A P    P  P    
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKE--PVRETATP-PPVPPRPVAPP 420

Query: 470 PAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
                E AP     A P +  P    P     
Sbjct: 421 VPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 37/144 (25%), Positives = 46/144 (31%), Gaps = 27/144 (18%)

Query: 308 KLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAP 367
            +    +A  + +  + +    R     E  E      EG A                A 
Sbjct: 5   LIGLVAAAAFEVITSAQLSRIGR--IERELRELRSLVAEGAAGPV-------------AK 49

Query: 368 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEG 427
            AE       AP A  A P    P A  + A+   P P    P     AP AE P     
Sbjct: 50  AAEQMA----APEAAEAAPL---PAAAESIASPEVPPPVPPAPAQEGEAPAAEQP---SA 99

Query: 428 APAAEGAPAPAEGAPAPPAEGAPR 451
            PA   APAPAE  P  P+  A  
Sbjct: 100 VPAPSAAPAPAE--PVEPSLAANP 121

Length = 931

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 32/93 (34%), Positives = 34/93 (36%), Gaps = 13/93 (13%)

Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
           A AAE   AP A    P     PA A   A         PAPA+   AP AE        
Sbjct: 48  AKAAEQMAAPEAAEAAPL----PAAAESIASPEVPPPVPPAPAQEGEAPAAE-------- 95

Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
                 PAP A  APA P E + A    A   E
Sbjct: 96  -QPSAVPAPSAAPAPAEPVEPSLAANPFAAAIE 127

Length = 931

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 29/129 (22%), Positives = 36/129 (27%), Gaps = 7/129 (5%)

Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE--GPPPAEGAPPAEAPPPAEGAPAAEGA 434
               A        A      P+ +    PP     P      PP    PP      A+ A
Sbjct: 70  RVNHAPANAQEHEAAR----PSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPA 125

Query: 435 PAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
           P P +     P    P  +   P       P   AP P  +        A P +P P AE
Sbjct: 126 PQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAP-QPEPVAE 184

Query: 495 APPAESAPA 503
             P    P 
Sbjct: 185 PAPVMDKPK 193

Length = 333

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 35/173 (20%), Positives = 41/173 (23%), Gaps = 3/173 (1%)

Query: 331  RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
            R    +  E  E +     P     P   A     + P   A       P   A P    
Sbjct: 849  RPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEE 908

Query: 391  PPAEGAPAAEGAPAPPAEGPPP-AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
                     E   AP  E P    E              P  E     A+   A      
Sbjct: 909  VVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEV 968

Query: 450  PRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
              AE    A+   AP      A         P  AP   P    E   A +AP
Sbjct: 969  VVAEPEVVAQ-PAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHA-TAP 1019

Length = 1068

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 29/92 (31%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 413 AEGAPPAEAPPP--AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
           AEGA    A          AAE AP PA  A +  +   P     P          E   
Sbjct: 40  AEGAAGPVAKAAEQMAAPEAAEAAPLPAA-AESIASPEVP----PPVPPAPAQEG-EAPA 93

Query: 471 APPAEGAPAPPADAPPAEPAPP--AEAPPAES 500
           A      PAP A   PAEP  P  A  P A +
Sbjct: 94  AEQPSAVPAPSAAPAPAEPVEPSLAANPFAAA 125

Length = 931

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 56.1 bits (136), Expect = 3e-08
 Identities = 26/64 (40%), Positives = 29/64 (45%)

Query: 440 GAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
           G  +  A  A  A  A  A    A PA  APA PA   PA  A A P +PA  A A  A 
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 500 SAPA 503
           +AP 
Sbjct: 97  AAPP 100

Length = 1228

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 28/92 (30%), Positives = 31/92 (33%), Gaps = 15/92 (16%)

Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA-EGAPAPPAEGAPRAEGAPP 457
           A G  A  AE            AP  AE AP    A + A    P P      +   AP 
Sbjct: 43  AAGPVAKAAEQMA---------APEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEAPA 93

Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
           AE          PAP A  APA P +   A  
Sbjct: 94  AE-----QPSAVPAPSAAPAPAEPVEPSLAAN 120

Length = 931

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 29/116 (25%), Positives = 31/116 (26%), Gaps = 5/116 (4%)

Query: 384 APPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
           APPA  AP    A     A AP A   P A       AP   E A              A
Sbjct: 52  APPAAAAPA---AAQPPPAAAPAAVSRPAA--PAAEPAPWLVEHAKRLTAQREQLVARAA 106

Query: 444 PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
            PA    +A  AP    A    A       A            A  A   +A    
Sbjct: 107 APAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARIER 162

Length = 484

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 32/128 (25%), Positives = 37/128 (28%), Gaps = 3/128 (2%)

Query: 371 GAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA 430
               A        A         +  P    A        PP    PP  AP PA+ AP 
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQ--PPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQ 127

Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
               PA       P  +         P     AP        PAE   AP  + P AEPA
Sbjct: 128 PVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPE-PVAEPA 186

Query: 491 PPAEAPPA 498
           P  + P  
Sbjct: 187 PVMDKPKR 194

Length = 333

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 32/100 (32%), Positives = 32/100 (32%), Gaps = 2/100 (2%)

Query: 349 APADGAPPAEGAPPAEGAPPAEGAP--PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP 406
           AP   A PA   PP   AP A   P  PA    P             E   A   APA P
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111

Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
               P A     A        A AA  AP P   A A  A
Sbjct: 112 EAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAA 151

Length = 484

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 35/153 (22%), Positives = 42/153 (27%), Gaps = 2/153 (1%)

Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEG 401
           + +P G    D  P A  A PA    P  GA P                P A  A  A  
Sbjct: 127 DDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASY 186

Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
           AP    +  P   G P  +        P  +      +    P  E  P A         
Sbjct: 187 APEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRP--EPPPGAGHVHRGGPG 244

Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
           P    +    P    AP P A  P   P P   
Sbjct: 245 PPERDDAPVVPIRPSAPGPLAAQPAPAPGPGEP 277

Length = 617

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 55.2 bits (133), Expect = 7e-08
 Identities = 27/164 (16%), Positives = 35/164 (21%)

Query: 340 GGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
             +              A         PP      A           +            
Sbjct: 44  VSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPARE 103

Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
                P    P P    PP  +PPP+     +E         P P A             
Sbjct: 104 GSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVA 163

Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
              A   + A    +    A    +PPAEP P      A   P 
Sbjct: 164 SDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPP 207

Length = 1352

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 54.8 bits (132), Expect = 7e-08
 Identities = 42/166 (25%), Positives = 46/166 (27%), Gaps = 4/166 (2%)

Query: 335 HEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 394
              T   E    G  P +G           G P  +  P A  A PA    P  GA P  
Sbjct: 102 ARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWP-- 159

Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG 454
            A    G        PP A  A PA   P  E       A  P         +       
Sbjct: 160 RAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWD 219

Query: 455 APPAEGAPAP-PAEGAPAPPAEGAPAPPADAPPAEP-APPAEAPPA 498
            P  +    P P  GA      G   P  D  P  P  P A  P A
Sbjct: 220 RPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLA 265

Length = 617

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 54.7 bits (132), Expect = 8e-08
 Identities = 28/132 (21%), Positives = 33/132 (25%), Gaps = 1/132 (0%)

Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
           A   +  P     P A    P   AP  E       E    AE  P           P  
Sbjct: 861 AEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETT-HPEV 919

Query: 432 EGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
             AP   +      ++ A   E A  AE    P  E A    A          P     P
Sbjct: 920 IAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQP 979

Query: 492 PAEAPPAESAPA 503
            A      +A  
Sbjct: 980 AAPVVAEVAAEV 991

Length = 1068

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 26/115 (22%), Positives = 28/115 (24%), Gaps = 1/115 (0%)

Query: 384 APPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
            P  + A P         A  P   GP P  G P   A P            A      A
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPVPV-GMPAHTARPSRVARGDPVRPTAHHAALRA 694

Query: 444 PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
           P A       G       P      A   P   +      APP    P AE    
Sbjct: 695 PQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADG 749

Length = 753

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 66/280 (23%), Positives = 85/280 (30%), Gaps = 19/280 (6%)

Query: 242  TPLPPEGEQPPVEEVPPPPEPEP-----EPPVEEIPPTPPSPVTPNPEELWLYLKDTVSA 296
             P P  G  P  +  P P    P     EP  E + P   + +    E       D    
Sbjct: 2495 APDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPP 2554

Query: 297  SNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPP 356
              P +     ++ +      P+P   +V     R  A  +      P  +   P   APP
Sbjct: 2555 LPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPP 2614

Query: 357  AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP----AEGPPP 412
            +   P      P   +P      P    PP    P       A G  + P      G   
Sbjct: 2615 SPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAA 2674

Query: 413  AEGAPPA----EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA-----PA 463
               +PP      A  P  G+  +   P P    P P       A   PP   A     PA
Sbjct: 2675 QASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPA 2734

Query: 464  PPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
             PA  AP     G   P   A PA P   A  PPA + PA
Sbjct: 2735 LPAAPAPPAVPAGPATPGGPARPARPPTTA-GPPAPAPPA 2773

Length = 3151

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 39/123 (31%), Positives = 40/123 (32%), Gaps = 7/123 (5%)

Query: 366 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA 425
           APPA  AP A   PP   AP A   P    APAAE AP                E     
Sbjct: 52  APPAAAAPAAA-QPPPAAAPAAVSRP---AAPAAEPAPWLVEHAKRLTA---QREQLVAR 104

Query: 426 EGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAP 485
             APAA  A APA  A    AE A R      A          A A  A+   A      
Sbjct: 105 AAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARIERIV 164

Query: 486 PAE 488
              
Sbjct: 165 NDT 167

Length = 484

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 48/212 (22%), Positives = 69/212 (32%)

Query: 292 DTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPA 351
           D +S S    + D  E     V A      +             E            + +
Sbjct: 34  DLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLS 93

Query: 352 DGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPP 411
             AP +     +   P      P    PP    PP+     +E          PPA  PP
Sbjct: 94  TLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPP 153

Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
            A  +P A A   A    AA    +P E A AP +  A      PPA  +P PP   +P 
Sbjct: 154 AAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPI 213

Query: 472 PPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
             +  +PAP      A+ A  + +  + S  +
Sbjct: 214 SASASSPAPAPGRSAADDAGASSSDSSSSESS 245

Length = 1352

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
            AA      AE   AP A  A     A  +  +P  P    PAP  EG  AP A+ P A 
Sbjct: 42  GAAGPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG-EAPAAEQPSAV 100

Query: 489 PAPPAEAPPAESA 501
           PAP A   PAE  
Sbjct: 101 PAPSAAPAPAEPV 113

Length = 931

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 66/307 (21%), Positives = 82/307 (26%), Gaps = 44/307 (14%)

Query: 220 IPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPV 279
           +P P     +A  AS V               P             PP    PP      
Sbjct: 380 VPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439

Query: 280 T---PNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHE 336
                    +        SA +     D      S  ++ P              +A+  
Sbjct: 440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAP 499

Query: 337 ETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE-------------- 382
                   P+  APA  +     A  A  AP A    PA  AP A               
Sbjct: 500 SAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNA 559

Query: 383 --------GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA--------------- 419
                   GA  A  A PA    AA    AP      P   A  A               
Sbjct: 560 GMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQA 619

Query: 420 ----EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
                APPP E  P  +  P  A+     P +G      + P +   AP    APAPP +
Sbjct: 620 AESRGAPPPWEDIPPDDYVPLSADEGFGGPDDGFVPVFDSGPDDVRVAPKPADAPAPPVD 679

Query: 476 GAPAPPA 482
             P PPA
Sbjct: 680 TRPLPPA 686

Length = 830

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.8 bits (126), Expect = 3e-07
 Identities = 40/128 (31%), Positives = 49/128 (38%), Gaps = 8/128 (6%)

Query: 355 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAE 414
           P   GA    G+     A       P  G    +G  PA G   +  APA PA    P+ 
Sbjct: 373 PSGGGASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSP 432

Query: 415 GAPPAEAPP-PAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
             P  +APP P         AP   E +P P   GAP       A  + APP  G P+  
Sbjct: 433 RVPWDDAPPAPPRSGIPPRPAPRMPEASPVP---GAP----DSVASASDAPPTLGDPSDT 485

Query: 474 AEGAPAPP 481
           AE  P+ P
Sbjct: 486 AEHTPSGP 493

Length = 624

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 40/206 (19%), Positives = 86/206 (41%), Gaps = 6/206 (2%)

Query: 13  AEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKA 72
            E      E    + ++EELE + + +R R+EE      +      E K+K    +    
Sbjct: 281 EELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEK----IEALK 336

Query: 73  AEELKREQERRALERKR-VIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELD 131
            E  +RE     LE+    ++E   E ++      +E+ +L +   + +  LEA   E+ 
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR 396

Query: 132 REIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKK 191
            E+     EI  L +++  L  + +  + +++ + E +  +LQ +  E N   +    + 
Sbjct: 397 NELEELKREIESLEERLERLSER-LEDLKEELKELEAELEELQTELEELNEELEELEEQL 455

Query: 192 REFSMEDAEKEKKPEWVKEPESKKKR 217
            E      E E++   ++E   + ++
Sbjct: 456 EELRDRLKELERELAELQEELQRLEK 481

Length = 1163

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 25/128 (19%), Positives = 31/128 (24%), Gaps = 8/128 (6%)

Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
             PA      + AP      P    P     P    AP A  A  P     P  E  PP 
Sbjct: 382 PSPAGSPDVKKKAPE-----PDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPV 436

Query: 420 EAPPPAEGAPAAEGAPAPAEGAPA---PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG 476
               P   +P A      A G P       +G         +   P   +    A     
Sbjct: 437 ARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDAAQTGVF 496

Query: 477 APAPPADA 484
                 + 
Sbjct: 497 EGVAELEK 504

Length = 620

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 40/279 (14%), Positives = 60/279 (21%), Gaps = 13/279 (4%)

Query: 226 EPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEE 285
           E    + A           P  G    + +      P          P     + P+P  
Sbjct: 67  ETAKLSAAVRYNQNA-PGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPS- 124

Query: 286 LWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKP 345
           LW                        +      P  K +  + +  Q    +     P+P
Sbjct: 125 LWGTAPKPEPQPPQAP---------ESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQP 175

Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGA-PPAEGAPPAEGAPPA-EGAPPAEGAPAAEGAP 403
             +    G PP + A P +G P      P      P +  P     AP    A       
Sbjct: 176 PQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQ 235

Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
            P    P      P      P       +    P +    PP +  P      P      
Sbjct: 236 LPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAP 295

Query: 464 PPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
            P    P               P       +    +   
Sbjct: 296 LPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREA 334

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 20/108 (18%), Positives = 23/108 (21%)

Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
            P  + A   P        G P    P P             A G P  P          
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAP 695

Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
                   P   G   PP +   A       +       APP    P 
Sbjct: 696 QAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPG 743

Length = 753

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 52.1 bits (126), Expect = 4e-07
 Identities = 49/164 (29%), Positives = 53/164 (32%), Gaps = 53/164 (32%)

Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP--------------- 437
           A GA AA  APA  A     A  AP   A  PA  A AA G                   
Sbjct: 77  AAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVPDIGEITEVEVI 136

Query: 438 ----AEG--------------------APAPPA---------EGAPRAEGAP-----PAE 459
                 G                     P+P A          G   + G+       A 
Sbjct: 137 EWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAA 196

Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
            APA  A  A A PA  A A PA AP A  AP A AP A +AP 
Sbjct: 197 AAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPG 240

Length = 547

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 26/130 (20%), Positives = 36/130 (27%)

Query: 370 EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
           EG  P  G P  E    A+ A              P +  P     + P     P+    
Sbjct: 144 EGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPED 203

Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
            +  + +    AP+      P      P   +P P     P PP +  P      P    
Sbjct: 204 PSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPS 263

Query: 490 APPAEAPPAE 499
           A    AP   
Sbjct: 264 ASATPAPIGG 273

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.9 bits (124), Expect = 6e-07
 Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 421 APPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP 480
           AP PA      + AP P    P P     P    AP A  A  P    AP P  E  P P
Sbjct: 381 APSPAGSPDVKKKAPEPD--LPQPDRHPGPAKPEAPGARPAELPSPASAPTP--EQQP-P 435

Query: 481 PADAPPAEPAPPAEAPPAES 500
            A + P  P+P A AP   +
Sbjct: 436 VARSAPLPPSPQASAPRNVA 455

Length = 620

>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional

 Score = 51.4 bits (124), Expect = 6e-07
 Identities = 41/139 (29%), Positives = 46/139 (33%), Gaps = 5/139 (3%)

Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG-APPAEGAPPAEGAPAAEGAPAPPA 407
           AP  GA  A G   A G      A  A  A      A     A    GA AA GA +  +
Sbjct: 266 APQLGAGAAVGTGLAAGGAAVAAAAGAGLAAGGGAAAAGGAAAAARGGAAAAGGASSAYS 325

Query: 408 EGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG--APRAEGAPPAEGAPAPP 465
            G     GA    A         A  A +P   A +  AE   +    GA    G     
Sbjct: 326 AGAAGGSGAAGVAAGLGGVARAGASAAASPLRRAASRAAESMKSSFRAGARSTGGGAGGA 385

Query: 466 AEGAPAPPAEGAPAPPADA 484
           A  A A  A  A  PPA A
Sbjct: 386 AAAAAAGAA--AAGPPAWA 402

Length = 440

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 51.7 bits (124), Expect = 7e-07
 Identities = 47/287 (16%), Positives = 81/287 (28%), Gaps = 12/287 (4%)

Query: 219 PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSP 278
           P P   P    A+ A+   D   +         P E    P  P  EPP    P      
Sbjct: 146 PPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPR 205

Query: 279 VTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEET 338
                  +         A    + DD       + S+           +    + +    
Sbjct: 206 PPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITL 265

Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA--EGAPPAEGA 396
                +  G       P    +  +        +P + G+ PA  +P A    +   E +
Sbjct: 266 PTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESS 325

Query: 397 PAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAP 456
            ++  + +  + G   + G  P+ +P P+   P A+ +       P+            P
Sbjct: 326 SSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRA----------P 375

Query: 457 PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
            +  A A       A  A    A   DA    PA      P ++  A
Sbjct: 376 SSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAA 422

Length = 1352

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.5 bits (124), Expect = 8e-07
 Identities = 28/100 (28%), Positives = 30/100 (30%), Gaps = 3/100 (3%)

Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPP---AEGAPPAEGAPPAEG 395
               P          AP    AP    APP+       G  P      AP A+ AP    
Sbjct: 413 AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA 472

Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAP 435
           AP    APAP     P    AP A A P A          
Sbjct: 473 APEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512

Length = 824

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.3 bits (123), Expect = 8e-07
 Identities = 28/107 (26%), Positives = 31/107 (28%), Gaps = 7/107 (6%)

Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
            P     PA   A AP    P PA    P+  P  A  A      P       A P    
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPA----PSTRPKAAAAANIP---PKEPVRETATPPPVP 413

Query: 450 PRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
           PR    P      + P     A P +  P     APP E      A 
Sbjct: 414 PRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIAD 460

Length = 585

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 51.5 bits (123), Expect = 9e-07
 Identities = 59/275 (21%), Positives = 81/275 (29%), Gaps = 24/275 (8%)

Query: 219  PIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPS- 277
            P P   P   +            T   P    PP      PP     P V  +  +  S 
Sbjct: 2739 PAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESL 2798

Query: 278  PVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEE 337
            P   +P +    +    +A  P +         ++   T  P        +L        
Sbjct: 2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSL-------- 2850

Query: 338  TEGGEPKPEGEA---PADGAPPAEGAPPAE------GAPPAEGAPPAEGAPPAEGAPPAE 388
              GG   P G+    P   +P A+ A PA         P    +  +   PP +   P +
Sbjct: 2851 PLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQ 2910

Query: 389  GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE---GAPAPAEGAPAPP 445
               P    P  +  P P  + PPP    P     P  + A A E     P P  GA  P 
Sbjct: 2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPG 2970

Query: 446  AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP 480
                PR     PA    AP    +  PP  G    
Sbjct: 2971 RVAVPRFRVPQPAPSREAP---ASSTPPLTGHSLS 3002

Length = 3151

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 28/129 (21%), Positives = 36/129 (27%), Gaps = 7/129 (5%)

Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAP---PAEGAPPAEGAPPAEGAPPAEGAPPA 387
            + +H      E +    +P     P   +         PP    PP     PA+ AP  
Sbjct: 69  HRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQP 128

Query: 388 EGAPPA---EGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAP 444
              P        P  +      A  P P   AP           P A   P P    PAP
Sbjct: 129 VQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVA-EPAP 187

Query: 445 PAEGAPRAE 453
             +   R E
Sbjct: 188 VMDKPKRKE 196

Length = 333

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 51.6 bits (123), Expect = 9e-07
 Identities = 39/148 (26%), Positives = 45/148 (30%), Gaps = 3/148 (2%)

Query: 344 KPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP 403
           +P         P        +  P A        APP     PA     A    AA G  
Sbjct: 675 QPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRA 734

Query: 404 APPAEGP---PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
            PPA  P    P   AP    PP A    A   A AP    P PP +  P  +  P    
Sbjct: 735 RPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAP 794

Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAE 488
            P PP +  P        A P    P +
Sbjct: 795 TPQPPPQAGPTSMQLMPRAAPGQQGPTK 822

Length = 991

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.1 bits (123), Expect = 9e-07
 Identities = 55/243 (22%), Positives = 72/243 (29%), Gaps = 27/243 (11%)

Query: 208 VKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPP 267
                            P       A   +    TP PP  +  P   VP  P      P
Sbjct: 369 ANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTP 428

Query: 268 VEEIPPTPPSPVTPNPEELW------LYLKDT----VSASNPVSIDD------LVEKLMS 311
                  PPS    N EELW      L L  T       +  VS+D       +    + 
Sbjct: 429 PANAANAPPS---LNLEELWQQILAKLELPSTRMLLSQQAELVSLDSNRAVIAVSPNWLG 485

Query: 312 AVSATPQPLLKSVVKDTL--RRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPA 369
            V +  +PLL+      L    + + E   G          A   PP + +PP     P 
Sbjct: 486 MVQSR-KPLLEQAFAKVLGRSIKLNLESQSGSASN-----TAKTPPPPQKSPPPPAPTPP 539

Query: 370 EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
              P A   PP    PP      +  APA   A + P    P      P +   P E   
Sbjct: 540 LPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSPEEIDK 599

Query: 430 AAE 432
           AA+
Sbjct: 600 AAK 602

Length = 620

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 28/130 (21%), Positives = 33/130 (25%), Gaps = 13/130 (10%)

Query: 366 APPAEGAPPA-EGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
            P  + A P  +     E   P    P   G PA    P+  A G P         A   
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDP--VRPTAHHAALR 693

Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
           A  AP   G P    G P PP   A           A   P   +        P P    
Sbjct: 694 APQAPRPGGPPGGGGGLPPPPDLPA----------AAGPAPCGSSLIASPTAPPEPEPPG 743

Query: 485 PPAEPAPPAE 494
                    +
Sbjct: 744 AEQADGAENQ 753

Length = 753

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 46/150 (30%), Positives = 54/150 (36%), Gaps = 32/150 (21%)

Query: 340 GGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
           GG   P G A    A       P  G    +G  PA G  P+  AP           PA 
Sbjct: 376 GGASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAP---------ATPAP 426

Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
             AP+P      P + APPA   PP  G                 P   APR   A P  
Sbjct: 427 SAAPSPRV----PWDDAPPA---PPRSGI----------------PPRPAPRMPEASPVP 463

Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
           GAP   A  + APP  G P+  A+  P+ P
Sbjct: 464 GAPDSVASASDAPPTLGDPSDTAEHTPSGP 493

Length = 624

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 44/263 (16%), Positives = 72/263 (27%), Gaps = 24/263 (9%)

Query: 249 EQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEK 308
                 +  P               +  SP     E          ++++P  I DL  +
Sbjct: 73  AAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYE----------ASTDPEYIPDL--Q 120

Query: 309 LMSAV---SATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEG 365
              ++   +  P+P      +   + Q   ++    E   E +       P    PP + 
Sbjct: 121 PDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEV-EAQLQQRQQAPQLPQPPQQV 179

Query: 366 APPAEGAPPAEGAPPAEGAPPAEGA---PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
            P   G PP + A P +G P        PP       +     PA    PA+   P + P
Sbjct: 180 LPQ--GMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLP 237

Query: 423 PPAEGAPAAEGAPAPAEGAPAPP--AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP 480
                       P  ++  P PP       +    P A+  P       P  P       
Sbjct: 238 QQP-PPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPL 296

Query: 481 PADAPPAEPAPPAEAPPAESAPA 503
           P    P       +    +  P 
Sbjct: 297 PPPQQPQLLPLVQQPQGQQRGPQ 319

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 31/135 (22%), Positives = 45/135 (33%), Gaps = 5/135 (3%)

Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
           EG  P  G P  E     +       +  +     A+ A A+   P   + G P     P
Sbjct: 144 EGEDPNPGPPLDEEDE--DADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPP 201

Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
              + P     P    AP+  +    PP+  +P     PP   AP PP      P +   
Sbjct: 202 EDPSSPSDSSLP---PAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK 258

Query: 478 PAPPADAPPAEPAPP 492
           P PP+ +    P   
Sbjct: 259 PTPPSASATPAPIGG 273

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 37/173 (21%), Positives = 45/173 (26%), Gaps = 11/173 (6%)

Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
           R + +   E  E +P   A A  A  A    P     P +    AE              
Sbjct: 286 RGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAV-----KAEVAEV 340

Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
                A +         E  P  E    A+      G  A +   A    A     E A 
Sbjct: 341 TDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDA-----EAAS 395

Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
            A   P A  A     E  P  P + AP P    P           PAE    
Sbjct: 396 AAPEEPAAL-ASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAEPDGI 447

Length = 460

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 55/312 (17%), Positives = 88/312 (28%), Gaps = 15/312 (4%)

Query: 205 PEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEP 264
           P    E  + + R            A+ A +       P  P+   PP    P  P P P
Sbjct: 73  PGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDP--PPPTPPPASPPPSP 130

Query: 265 EPPVEEIPPTPPSPV-TPNPEELWLYLKDTVSASNPVSIDD--LVEKLMSAVSATPQPLL 321
            P + E+     SP   P              AS+  S     L        +  P    
Sbjct: 131 APDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPP 190

Query: 322 KSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 381
                 T    AS        P     +    AP    A  A  +     +  + G    
Sbjct: 191 AEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWG 250

Query: 382 E-----GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
                    PA    P     A+         GP  +  +P   +P P+  +P +  AP+
Sbjct: 251 PENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPS 310

Query: 437 PA-----EGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
                    +    +  +  +        A +P    + +P     P P   + P +   
Sbjct: 311 SPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPR 370

Query: 492 PAEAPPAESAPA 503
           P+ AP + +A A
Sbjct: 371 PSRAPSSPAASA 382

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 41/172 (23%), Positives = 53/172 (30%), Gaps = 6/172 (3%)

Query: 337 ETEGGEPKPEGEAPADGAP--PAEGAPPAEGAPPAEGA--PPAEGAPPAEGAPPAEGAPP 392
             EGGE  P   A    A      G+     +  AE A      GA   +   P  G PP
Sbjct: 14  AAEGGEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPP 73

Query: 393 AEGAPAAEGAPAPPAEGP-PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
             G  A                  A PA    P    P++   P P     +PP   AP 
Sbjct: 74  GPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPD 133

Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD-APPAEPAPPAEAPPAESAP 502
                   G+P PP   +P        A  +D A   + A P  +P   +  
Sbjct: 134 LSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARA 185

Length = 1352

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 47/206 (22%), Positives = 65/206 (31%), Gaps = 19/206 (9%)

Query: 295 SASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGE----AP 350
           SA    +     + ++ AV A    LL  +   + +        EG   K   +     P
Sbjct: 597 SAVTTAAASLADDDILDAVLAARDSLLSDLDALSPK--------EGDGKKSSADRKPKTP 648

Query: 351 ADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGP 410
              APPA        +P A     +    P       +  P A  A A+  APAPP    
Sbjct: 649 PSRAPPAS-LSKPASSPDASQTSASFDLDPDFELATHQSVPEA--ALASGSAPAPPPVPD 705

Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
           P     PP E  P  E A A +G    AEG  +   E A  +E     + A   P   A 
Sbjct: 706 P--YDRPPWEEAP--EVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAE 761

Query: 471 APPAEGAPAPPADAPPAEPAPPAEAP 496
           A       A    +   +        
Sbjct: 762 AQSPASTTALTQTSSEVQDTELNLVL 787

Length = 944

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 46/199 (23%), Positives = 69/199 (34%), Gaps = 5/199 (2%)

Query: 310 MSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAP---PAEGAPPAEG- 365
           ++A S     ++++    +   Q + +ET   +P+P  EA     P    +  A P+EG 
Sbjct: 361 LAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGK 420

Query: 366 -APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
            A P       +  P  +    A+ A       A     A  AE PP  + +    A   
Sbjct: 421 TAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNE 480

Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
            +   +   +  P +  P   A          PAE            PP +GA  PP D 
Sbjct: 481 TDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPDW 540

Query: 485 PPAEPAPPAEAPPAESAPA 503
             A PA  A     E A A
Sbjct: 541 EHAAPADTAGGGADEEAEA 559

Length = 709

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 28/69 (40%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA-PAPPAEGAPAPPAEGAPAPPADAPPAEP 489
           A   P+ A GAP P A  AP    APP   A PA PA   PAP      A    A  A+P
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADP 440

Query: 490 APPAEAPPA 498
           A  A A   
Sbjct: 441 AAAASAGDR 449

Length = 576

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 49.8 bits (118), Expect = 3e-06
 Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 9/217 (4%)

Query: 3    EETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKK 62
            EE   A E  A+  A  A+ +A   K     +K+A+  ++ EEA  A   K     ++  
Sbjct: 1480 EEAKKADE--AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD 1537

Query: 63   KLRLLLRKKAAEELKREQERRALERKRVIDE--RCGEPKDTDDMAEDEIGDLCQEYWQRI 120
            + +    KK A+ELK+ +E +  E K+  +E  +  E K+      +E     +   + +
Sbjct: 1538 EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597

Query: 121  YNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEF 180
              L   + ++  E   K  E     +++     K      KKV + + K A+ +KKA E 
Sbjct: 1598 MKLYEEEKKMKAEEAKKAEEAKIKAEEL-----KKAEEEKKKVEQLKKKEAEEKKKAEEL 1652

Query: 181  NFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKR 217
                +   +K  E + +  E +KK E  K+ E  +K+
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689

Length = 2084

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 45/255 (17%), Positives = 53/255 (20%), Gaps = 44/255 (17%)

Query: 198 DAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVP 257
            A      E    P S         P      A  A+    G      P           
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAG--AAAAPAEASAAPAPGV 647

Query: 258 PPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATP 317
             PE  P+                                             +A +A P
Sbjct: 648 AAPEHHPKHVAVPDASDGGDGWPAKAGG-------------------------AAPAAPP 682

Query: 318 QPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEG 377
                                      P G APA  AP     PPA  A      PP   
Sbjct: 683 PA-----------------PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAA 725

Query: 378 APPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
              +  +P A+   P    P     PA     PPP     PA AP  A            
Sbjct: 726 QGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEM 785

Query: 438 AEGAPAPPAEGAPRA 452
           AE       +   R 
Sbjct: 786 AEDDAPSMDDEDRRD 800

Length = 824

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 48.4 bits (114), Expect = 5e-06
 Identities = 63/177 (35%), Positives = 79/177 (44%), Gaps = 6/177 (3%)

Query: 330 RRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 389
           R+Q   +  +  E     +A A  A   + A     AP  + +  A     A  AP    
Sbjct: 174 RKQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAA 233

Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
           APPA+ A A   A A PA+   P      A APP    AP A+ A  PA+ A  P    A
Sbjct: 234 APPAKAAAAPAKAAAAPAKAAAPP---AKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAA 290

Query: 450 PRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP---AEAPPAESAPA 503
           P A+ A     A A PA+ A AP    AP   A APPA+ A P   A APPA++A A
Sbjct: 291 PPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAA 347

Length = 357

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 49.0 bits (117), Expect = 6e-06
 Identities = 48/246 (19%), Positives = 70/246 (28%), Gaps = 8/246 (3%)

Query: 257 PPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSAT 316
            PP  P P P  E       S  T +   L         +  P           +   A+
Sbjct: 66  EPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPAS 125

Query: 317 PQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAE 376
           P P     + + LR   S        P   G +P         A  ++ A   + A P  
Sbjct: 126 PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASP--------AAVASDAASSRQAALPLS 177

Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPA 436
                  AP +  A P    P A  +P PP    P +  A      P    A  A  + +
Sbjct: 178 SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSS 237

Query: 437 PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
            +  + +      P  E   P       P     A    G  + P  A  +         
Sbjct: 238 DSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPS 297

Query: 497 PAESAP 502
           P+ S+P
Sbjct: 298 PSPSSP 303

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 43/315 (13%), Positives = 78/315 (24%), Gaps = 13/315 (4%)

Query: 200 EKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPP 259
             E +        +     P  E  P P   +             PP    P + E+  P
Sbjct: 81  ANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRP 140

Query: 260 PEPEPEPPVEEIPPTPPSPV-----TPNPEELWLYL---KDTVSASNPVSIDDLVEKLMS 311
                 PP    P    SP        +  +  L L   ++T  A +    +       +
Sbjct: 141 VGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPA 200

Query: 312 AVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEG 371
           A S  P      +         +   +   +        +       G  P    P    
Sbjct: 201 AASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRP 260

Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA---EGA 428
           AP        E +     +     A ++           P + G+ PA + P A     +
Sbjct: 261 APITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSS 320

Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
                + + +  + +          G  P+             P +      P+ AP + 
Sbjct: 321 SRESSSSSTSSSSESSRGAAVSP--GPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSP 378

Query: 489 PAPPAEAPPAESAPA 503
            A         +  A
Sbjct: 379 AASAGRPTRRRARAA 393

Length = 1352

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 28/126 (22%), Positives = 32/126 (25%), Gaps = 9/126 (7%)

Query: 347 GEAPADGAPPA--EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG-APPAEGAPAAEGAP 403
           G  P         +     E   P    P   G P     P       P           
Sbjct: 634 GFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALR 693

Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
           AP A  P    G      PPP +   AA  AP  +    +P A   P      P     A
Sbjct: 694 APQAPRPGGPPGGGGG-LPPPPDLPAAAGPAPCGSSLIASPTAPPEP-----EPPGAEQA 747

Query: 464 PPAEGA 469
             AE  
Sbjct: 748 DGAENQ 753

Length = 753

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.5 bits (115), Expect = 6e-06
 Identities = 49/134 (36%), Positives = 57/134 (42%), Gaps = 12/134 (8%)

Query: 374 PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEG 433
           P E   P+ G   A     AEG PA+ GA   P  G    +G  PA    P+  AP    
Sbjct: 367 PVESLRPSGGGASAPSGSAAEG-PASGGAATIPTPGTQGPQGTAPAAGMTPSSAAP---A 422

Query: 434 APAPAEG-APAPPAEGAPRAEGAPPAEGAPAPPAEGAP-APPAEGAP---APPADAPPAE 488
            PAP+   +P  P + AP A   PP  G P  PA   P A P  GAP   A  +DAPP  
Sbjct: 423 TPAPSAAPSPRVPWDDAPPA---PPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTL 479

Query: 489 PAPPAEAPPAESAP 502
             P   A    S P
Sbjct: 480 GDPSDTAEHTPSGP 493

Length = 624

>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 67/404 (16%), Positives = 111/404 (27%), Gaps = 43/404 (10%)

Query: 51   RKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIG 110
            R+KGF    +K K        A ++   E+E   +     +        D D +    IG
Sbjct: 1067 RQKGFTPFPKKAKSVEAAVAGATDDAAEEEEEIDVSSSSGVR-----GSDYDYLLSMAIG 1121

Query: 111  DLCQEYWQR--------IYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKK 162
             L  E  Q            +E +K    + + LKD +  E      D          K+
Sbjct: 1122 TLTLEKVQELCADRDKLNIEVEDLKKTTPKSLWLKDLDALEKELDKLD----------KE 1171

Query: 163  VSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPE 222
             +K E    KLQ+ AA    R +  A KK           + P+     ++ KK     E
Sbjct: 1172 DAKAEEAREKLQRAAA----RGESGAAKKV--------SRQAPKKPAPKKTTKKAS---E 1216

Query: 223  PEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPN 282
             E   E+   ++   +     + P+G     ++ P   + + E   +EI          N
Sbjct: 1217 SETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEE--DEILDLKDRLAAYN 1274

Query: 283  PEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEET-EGG 341
             +               V       +     S +          D     +  E   + G
Sbjct: 1275 LDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKG 1334

Query: 342  EPKPEGEAPADGAPPAEG--APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
              KP         PPA      PA      +          A G  P +       +P  
Sbjct: 1335 GRKPAAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMRASPFN 1394

Query: 400  EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
            + + +         E          +          A      A
Sbjct: 1395 KKSGSVLGRAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRA 1438

Length = 1465

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 27/101 (26%), Positives = 31/101 (30%), Gaps = 2/101 (1%)

Query: 384 APPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPA 443
            P  + A P   AP+       P+  P  A  A      P  E A      P P      
Sbjct: 363 VPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVP 422

Query: 444 PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
              E AP  +    A      P    PAPP E   A  AD 
Sbjct: 423 HTPESAP--KLTRAAIPVDEKPKYTPPAPPKEEEKALIADG 461

Length = 585

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.2 bits (115), Expect = 8e-06
 Identities = 33/99 (33%), Positives = 34/99 (34%), Gaps = 10/99 (10%)

Query: 363 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
             GAP    A      P A  APP   APP   A  A  A A PA  P P   A P    
Sbjct: 378 ERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAP---- 433

Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
                 PA    PA A  A           +G  PA GA
Sbjct: 434 ------PARSADPAAAASAGDRWRAFVAFVKGKKPALGA 466

Length = 576

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 9e-06
 Identities = 23/100 (23%), Positives = 25/100 (25%)

Query: 331 RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
             A+               PA    PA   P   G  PA GAP    A      P    A
Sbjct: 412 PAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471

Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA 430
              E   A   AP                 AP  A+ A  
Sbjct: 472 AAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511

Length = 824

>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional

 Score = 47.6 bits (114), Expect = 9e-06
 Identities = 36/128 (28%), Positives = 39/128 (30%), Gaps = 10/128 (7%)

Query: 347 GEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP 406
           G A A  A     A     A     A    GA  A GA  A  A  A G+ AA    A  
Sbjct: 283 GAAVAAAAGAGLAAGGGAAAAGGAAAAARGGAAAAGGASSAYSAGAAGGSGAA--GVAAG 340

Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA 466
             G         A A   A  +P    A   AE   +    GA    G      A A   
Sbjct: 341 LGG--------VARAGASAAASPLRRAASRAAESMKSSFRAGARSTGGGAGGAAAAAAAG 392

Query: 467 EGAPAPPA 474
             A  PPA
Sbjct: 393 AAAAGPPA 400

Length = 440

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 47.3 bits (111), Expect = 9e-06
 Identities = 63/196 (32%), Positives = 78/196 (39%), Gaps = 5/196 (2%)

Query: 305 LVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAE 364
           L E+L +      Q   K+  ++  +R+   E     +      A    A     AP  +
Sbjct: 155 LAEQLAAKRLKDEQHRHKARKQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAPSGK 214

Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
            +  A     A  AP    APPA+ A     A A   APA  A  P  A   P   A PP
Sbjct: 215 KSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAA---APAKAAAPPAKAAAPPAKAAAPP 271

Query: 425 AEGAPAAEGAPAPAEGAPAPPAEG--APRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
           A+ A     A AP   A APPA+   AP    A PA+ A AP    AP   A   PA  A
Sbjct: 272 AKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAA 331

Query: 483 DAPPAEPAPPAEAPPA 498
             P    APPA+A  A
Sbjct: 332 TPPAKAAAPPAKAAAA 347

Length = 357

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 26/70 (37%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 435 PAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE-PAPPA 493
              A G  A  AE          AE AP P A  + A P    P P   AP  E  AP A
Sbjct: 40  AEGAAGPVAKAAEQMA---APEAAEAAPLPAAAESIASPE--VPPPVPPAPAQEGEAPAA 94

Query: 494 EAPPAESAPA 503
           E P A  AP+
Sbjct: 95  EQPSAVPAPS 104

Length = 931

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 47.5 bits (114), Expect = 1e-05
 Identities = 43/160 (26%), Positives = 48/160 (30%), Gaps = 43/160 (26%)

Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA---------------- 430
           A GA  A  APAA  APA  A   P    A PA A   A G                   
Sbjct: 77  AAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVPDIGEITEVEVI 136

Query: 431 ----AEGAPAPAEGA-------------PAPPA---------EGAPRAEGAPPAEGAPAP 464
                 G     + +             P+P A          G   + G+       A 
Sbjct: 137 EWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAA 196

Query: 465 PAEGAPAPPAEGAPAP-PADAPPAEPAPPAEAPPAESAPA 503
            A  A A PA  APA   A AP   PA  A    A  A A
Sbjct: 197 AAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAA 236

Length = 547

>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 32/115 (27%), Positives = 37/115 (32%), Gaps = 4/115 (3%)

Query: 336 EETEGGEPKPEGEA--PADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA 393
           E T  G+  P G+A   A GA  A  A PA     A            E    A+    A
Sbjct: 191 EVTTAGDLLPPGQAREQAQGAKSATAA-PATVPQAAPLPQAQPKKAATEEELIADAKKAA 249

Query: 394 EGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
            G PAA  A A   E  P  +     +       A         AEG    P EG
Sbjct: 250 TGEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGKL-AEGVTVTPVEG 303

Length = 423

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 29/86 (33%), Positives = 31/86 (36%), Gaps = 1/86 (1%)

Query: 419 AEAPPPAEGAPA-AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
           A+ P P E      EG P+P  G   PP  G      A  A    A  A  A  P A  A
Sbjct: 375 ADLPTPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALA 434

Query: 478 PAPPADAPPAEPAPPAEAPPAESAPA 503
             P A A  A P  PA AP       
Sbjct: 435 AVPDAAAAAAAPPAPAAAPQPAVRLN 460

Length = 598

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.2 bits (113), Expect = 2e-05
 Identities = 31/161 (19%), Positives = 37/161 (22%), Gaps = 24/161 (14%)

Query: 333 ASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA-------- 384
                 +   P    +A A               PP   AP    A P            
Sbjct: 367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAAR 426

Query: 385 ------PPAEGAPPAEGAPAAEGAPAPPA-EGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
                   A  A  +E A A+   P   A E       AP A    P         A   
Sbjct: 427 QQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP---------AKKE 477

Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
           A    A       +   A P     A   E  P   A+ A 
Sbjct: 478 AYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAA 518

Length = 647

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 47.2 bits (113), Expect = 2e-05
 Identities = 22/75 (29%), Positives = 24/75 (32%), Gaps = 4/75 (5%)

Query: 338 TEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 397
           T          +    AP A+       APPA  AP A   P    A  A  A      P
Sbjct: 45  TAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKP----AAAAAAAAAPAAPP 100

Query: 398 AAEGAPAPPAEGPPP 412
           AA  A AP A     
Sbjct: 101 AAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 20/73 (27%), Positives = 20/73 (27%)

Query: 333 ASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPP 392
           A               A A  A       PA  A  A  APP   A  A  A PA     
Sbjct: 43  APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAA 102

Query: 393 AEGAPAAEGAPAP 405
           A  A  A  A   
Sbjct: 103 AAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 26/109 (23%), Positives = 28/109 (25%), Gaps = 6/109 (5%)

Query: 348 EAPADGAPPAEGAPPAEGAPPAEGAPPAE-GAPPAEGAPPAEGAPPAEGAPAAEGAPAPP 406
           EA     P  + A P   AP      PA    P A  A       P          P  P
Sbjct: 357 EALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRP 416

Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
              P P    P +         P  E    P    PAPP E        
Sbjct: 417 VAPPVP--HTPESAPKLTRAAIPVDE---KPKYTPPAPPKEEEKALIAD 460

Length = 585

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 31/91 (34%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAP-PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE 453
                  AP+P A  P   + AP  + P P     PA   AP  A  A  P    AP  E
Sbjct: 374 VRNDGGVAPSP-AGSPDVKKKAPEPDLPQPDRHPGPAKPEAPG-ARPAELPSPASAPTPE 431

Query: 454 GAPP-AEGAPAPPAEGAPAPPAEGAPAPPAD 483
             PP A  AP PP+  A AP    +  P  D
Sbjct: 432 QQPPVARSAPLPPSPQASAPRNVASGKPGVD 462

Length = 620

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 47.1 bits (113), Expect = 2e-05
 Identities = 54/192 (28%), Positives = 58/192 (30%), Gaps = 42/192 (21%)

Query: 345 PEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
             G+  + G   A        A  A  A  A  A  A  AP    A PA  A AA G   
Sbjct: 61  KVGDTVSVGGLLAVIEAAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVV 120

Query: 405 P---P---------------AEGPPPAEGAPPA---------EAPPPA----------EG 427
               P                 G    E              E P P            G
Sbjct: 121 EVKVPDIGEITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVG 180

Query: 428 APAAEGAP-APAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP 486
              + G+     E A A PA  A  A  AP A  A AP    APAP A  APA  A A  
Sbjct: 181 DKVSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAP----APAPAAAAAPAAAAPAAA 236

Query: 487 AEPAPPAEAPPA 498
           A P     A PA
Sbjct: 237 AAPGKAPHASPA 248

Length = 547

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 12/109 (11%)

Query: 388 EGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
           + +         +     PA  P P+  A  + +P        +  A  P+    A    
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSP------SQSSAAAQPSAPQSATQPA 421

Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
           G P      P    P  P   AP          PA     +  P ++  
Sbjct: 422 GTPPTVSVDPPAAVPVNPPSTAP------QAVRPAQFKEEKKIPVSKVS 464

Length = 614

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 26/73 (35%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 427 GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP 486
           GAP A    A A           P       A   P PPA   P PPA   P  PA A  
Sbjct: 122 GAPPAAAPAAAAAAKAEKTTPEKP-----KAAAPTPEPPAASKPTPPAAAKPPEPAPAAK 176

Query: 487 AEPAPPAEAPPAE 499
             P P A A P E
Sbjct: 177 PPPTPVARADPRE 189

Length = 418

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 26/93 (27%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG 454
             PA   APA P +  P     P     P     P      AP++      A        
Sbjct: 170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAAT------- 222

Query: 455 APPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
             PA  APA P   AP P  +   + PA  P A
Sbjct: 223 --PAPAAPATPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 14/215 (6%)

Query: 10  ETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLR 69
           E   E      E      +L EL  +  ++ + ++E       K  +    K+   L   
Sbjct: 197 EKEKELEEVLREINEISSELPELREELEKLEKEVKEL---EELKEEIEELEKELESLEGS 253

Query: 70  KKAAEELKREQERRALERK---RVIDERCGEPKDTDDMAED--EIGDLCQEYWQRIYNLE 124
           K+  EE  RE E R  E K     ++E+  E K+  + AE+  ++ +  +EY   +  +E
Sbjct: 254 KRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIE 313

Query: 125 AIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRS 184
                L+ EI   +  I EL ++   L       + KK+ + E +  +L+++   +    
Sbjct: 314 KRLSRLEEEINGIEERIKELEEKEERL-----EELKKKLKELEKRLEELEERHELYEEAK 368

Query: 185 QLKAVKKR-EFSMEDAEKEKKPEWVKEPESKKKRI 218
             K   +R +  +     EK  + ++E E  K+ I
Sbjct: 369 AKKEELERLKKRLTGLTPEKLEKELEELEKAKEEI 403

Length = 880

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 48/247 (19%), Positives = 68/247 (27%), Gaps = 16/247 (6%)

Query: 211  PESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPP-PPEPEPEPPVE 269
            P       P   P         AS  E  +  P P +   PP   + P    P    P  
Sbjct: 2767 PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826

Query: 270  EIPPTP-----PSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSV 324
             +PP         P  P P    L L  +V+    V          +  +A  +P ++ +
Sbjct: 2827 PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRL 2886

Query: 325  VKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 384
             +  + R            +     P     P +   P    P  +  PP +  PP    
Sbjct: 2887 ARPAVSRS----------TESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPP 2936

Query: 385  PPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAP 444
            P  +        PA  G P+     P      P   A P       A    APA   P  
Sbjct: 2937 PRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPL 2996

Query: 445  PAEGAPR 451
                  R
Sbjct: 2997 TGHSLSR 3003

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 30/147 (20%), Positives = 42/147 (28%)

Query: 357 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA 416
           AEG       P   G    +    ++G   ++ A  A     A  A     E P      
Sbjct: 15  AEGGEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPG 74

Query: 417 PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG 476
           P  EAP     +         A  +PA      P    +P       PPA   P+P  + 
Sbjct: 75  PGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDL 134

Query: 477 APAPPADAPPAEPAPPAEAPPAESAPA 503
           +        P  P   +      S  A
Sbjct: 135 SEMLRPVGSPGPPPAASPPAAGASPAA 161

Length = 1352

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 46.6 bits (110), Expect = 3e-05
 Identities = 41/155 (26%), Positives = 45/155 (29%), Gaps = 7/155 (4%)

Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPP 412
           G  P + +P            P    PP     P     P    P     PA       P
Sbjct: 670 GHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPM---RPPAAPPGRAQRPAAATGRARP 726

Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA- 471
              AP    PP A    A   A AP    P   A G  R   A P    P PP +  PA 
Sbjct: 727 PAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAP 786

Query: 472 ---PPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
              P     P PP  A P        A P +  P 
Sbjct: 787 QQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPT 821

Length = 991

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 46/192 (23%), Positives = 61/192 (31%), Gaps = 7/192 (3%)

Query: 307 EKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAP--PAE 364
           EK  +A    P+P  ++         A+   +EG    P      +  PP E AP     
Sbjct: 386 EKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQT 445

Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
            A  A+ +  +         PP       + A     AP        P +  P  E    
Sbjct: 446 AAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDE---A 502

Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA--PPAEGAPAPPAEGAPAPPAEGAPAPPA 482
            E    A  APA        P    P  +GA  PP +   A PA+ A     E A A   
Sbjct: 503 VETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGI 562

Query: 483 DAPPAEPAPPAE 494
                  APP E
Sbjct: 563 GGNNTPSAPPPE 574

Length = 709

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 31/77 (40%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
             GAP      AA GAP P A   PP   APP    PPA  A  A   PAPA   PA  A
Sbjct: 378 ERGAPA--PPSAAWGAPTPAAPAAPPPAAAPP---VPPAAPARPAAARPAPAPAPPAAAA 432

Query: 447 EGAPRAEGAPPAEGAPA 463
             A  A+ A  A     
Sbjct: 433 PPARSADPAAAASAGDR 449

Length = 576

>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 24/109 (22%), Positives = 31/109 (28%), Gaps = 3/109 (2%)

Query: 363 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
            +  PP +    A+GA  A  AP      P               E    A+    A   
Sbjct: 196 GDLLPPGQAREQAQGAKSATAAPAT---VPQAAPLPQAQPKKAATEEELIADAKKAATGE 252

Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
           P A  A AA+  P P +         A  A+      G  A      P 
Sbjct: 253 PAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGKLAEGVTVTPV 301

Length = 423

>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 39/108 (36%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 367 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
           P  E +   E  P   G  PA   PP +  P A+  P P  +G P  E     E P PA 
Sbjct: 256 PYFEESKGYEPPPAPSGGSPA---PPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAG 312

Query: 427 GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP-APPAEGAPAPP 473
              AA G P P    PAP A+   R EG P  E     PP    PA P
Sbjct: 313 RDGAAGGEPKPGPPRPAPDAD---RPEGWPSLEAITFPPPTPATPAVP 357

Length = 416

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 72/273 (26%), Positives = 97/273 (35%), Gaps = 21/273 (7%)

Query: 236 VEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVS 295
           VE G    +  E  +   E  P  PEPE  P   E P   P+P    P         +  
Sbjct: 67  VEVGGVLAIIGEPGEAGSEPAPAAPEPEAAPE-PEAPAPAPTPAAEAPAPAAPQAGGSGE 125

Query: 296 ASNPVSIDDLVEKLMSA-VSATPQPLLKSVVKDTLRRQASHEETEGGEPKP------EGE 348
           A+  V + +L E +    V++  + +  +V  D    + S ++ +   P P      E  
Sbjct: 126 AT-EVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIR 184

Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
           AP D            G   A  A PAE   PA     +E AP          AP PPA 
Sbjct: 185 APEDDTVEVGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHA-APDPPAP 243

Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAP-----APAEGAPAPPAEGA------PRAEGAPP 457
            P PA+ A PA A P + G       P     A  +G      +G        + +    
Sbjct: 244 APAPAKTAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVKGTGVGGRIRKQDVLAA 303

Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
           A+ A    A  A    A    AP A A PAEP 
Sbjct: 304 AKAAEEARAAAAAPAAAAAPAAPAAAAKPAEPD 336

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 36/112 (32%), Positives = 38/112 (33%), Gaps = 12/112 (10%)

Query: 366 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA 425
            P  + A P   AP      PA    P     AA  A  PP    P  E A P   PP  
Sbjct: 363 VPAPQPAKPTAAAPSPVRPTPAPSTRP----KAAAAANIPPK--EPVRETATPPPVPPR- 415

Query: 426 EGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
              P A   P   E AP       P  E   P    PAPP E   A  A+G 
Sbjct: 416 ---PVAPPVPHTPESAPKLTRAAIPVDEK--PKYTPPAPPKEEEKALIADGD 462

Length = 585

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 43/232 (18%), Positives = 60/232 (25%), Gaps = 30/232 (12%)

Query: 225 PEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPE 284
           P    +  A+       TP P     P   +   P   +        P     P+    E
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 285 ELWLYLKDTVSASNPVSIDDLVEK---------------LMS------------AVSATP 317
                     +A+N     +L E                L+S            AV A  
Sbjct: 421 PTEPSPTPPANAANAPPSLNLEELWQQILAKLELPSTRMLLSQQAELVSLDSNRAVIAVS 480

Query: 318 QPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPA---EGAPPAEGAPP 374
              L  V       + +  +  G   K   E+ +  A      PP       PPA   P 
Sbjct: 481 PNWLGMVQSRKPLLEQAFAKVLGRSIKLNLESQSGSASNTAKTPPPPQKSPPPPAPTPPL 540

Query: 375 AEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
            +    A    P    P A  A +   A  P    PPP     P  +P    
Sbjct: 541 PQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDS 592

Length = 620

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 30/73 (41%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
             GAPAP   A   P    P A  APP   AP  P    PA PA  A A PA AP    A
Sbjct: 378 ERGAPAPPSAAWGAPT---PAAPAAPPPAAAPPVP----PAAPARPAAARPAPAPAPPAA 430

Query: 491 PPAEAPPAESAPA 503
               A  A+ A A
Sbjct: 431 AAPPARSADPAAA 443

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 32/78 (41%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 357 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA---PAAEGAPAPPAEGPPPA 413
             GAP    A      P A  APP   APP   A PA  A   PA   APAPPA   PPA
Sbjct: 378 ERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAP--APAPPAAAAPPA 435

Query: 414 EGAPPAEAPPPAEGAPAA 431
             A PA A    +   A 
Sbjct: 436 RSADPAAAASAGDRWRAF 453

Length = 576

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 22/50 (44%), Positives = 23/50 (46%)

Query: 453 EGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
           E A  A  APA  AE A A PA  A A    A PA  AP A A    + P
Sbjct: 82  ESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131

Length = 464

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.7 bits (109), Expect = 5e-05
 Identities = 33/231 (14%), Positives = 47/231 (20%), Gaps = 9/231 (3%)

Query: 204 KPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPE 263
           + E V  P         P          +A+        P  P     P    P      
Sbjct: 583 QVEAVVGPAPGAAGGEGPPAPASSGPPEEAA-------RPAAPAAPAAPAAPAPAGAAAA 635

Query: 264 PEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKS 323
           P        P   +P             D        +          A +         
Sbjct: 636 PAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG 695

Query: 324 VVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAP--PA 381
                     +     G    P  + P      +  +P A+   P    P     P    
Sbjct: 696 AAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAP 755

Query: 382 EGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
              PP     PA    AA     P  E     + AP  +     +    A 
Sbjct: 756 AQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAM 806

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 39/167 (23%), Positives = 45/167 (26%), Gaps = 12/167 (7%)

Query: 349  APADGAPPAEGAPPAEGAPPAEGAPPAE---GAPPAEGAPP---------AEGAPPAEGA 396
            A      P  G PP   APPA            P  E   P          E A    G 
Sbjct: 2491 AAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGD 2550

Query: 397  PAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAP 456
            P     PA P   P  +   P     P      +    P     +  P A    R +   
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRG 2610

Query: 457  PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
            PA  +P PP   AP PP         +  P  P            PA
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPA 2657

Length = 3151

>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 27/111 (24%), Positives = 34/111 (30%), Gaps = 3/111 (2%)

Query: 351 ADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPA-EGAPPAEGAPAAEGAPAPPAEG 409
            D  PP +    A+GA  A  AP     P A   P A       E    A+   A   E 
Sbjct: 196 GDLLPPGQAREQAQGAKSATAAPAT--VPQAAPLPQAQPKKAATEEELIADAKKAATGEP 253

Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
              A  A   E  P  +   A +   A A+       + A      P   G
Sbjct: 254 AANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGKLAEGVTVTPVEGG 304

Length = 423

>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 41/139 (29%), Positives = 48/139 (34%), Gaps = 10/139 (7%)

Query: 375 AEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE------GPPPAEGAPPAEAPPPAEGA 428
              A  A  A  A  A  A  APA E A AP A            +G   A+     + A
Sbjct: 268 RAAAREARAAAAAPAATAAAAAPAEEPAVAPMAAIRAAHVETAADKGERAAKPAAADKAA 327

Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAE----GAPAPPAEGAPAPPADA 484
                 P  AE A   PAE APRA   P  + A    +     GA A  A   PA   DA
Sbjct: 328 DKPADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGASADAAARTPARARDA 387

Query: 485 PPAEPAPPAEAPPAESAPA 503
              +   P       +A A
Sbjct: 388 AAPDADTPPGGASLAAAQA 406

Length = 413

>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 24/106 (22%), Positives = 30/106 (28%), Gaps = 10/106 (9%)

Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE----- 453
             G   PP +    A+GA  A A P        + AP P         E    A+     
Sbjct: 194 TAGDLLPPGQAREQAQGAKSATAAPAT----VPQAAPLPQAQPKKAATEEELIADAKKAA 249

Query: 454 -GAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
            G P A  A A   E  P    + A    A    A      +    
Sbjct: 250 TGEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGKLAEG 295

Length = 423

>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional

 Score = 45.3 bits (107), Expect = 7e-05
 Identities = 22/93 (23%), Positives = 26/93 (27%), Gaps = 4/93 (4%)

Query: 361 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAE 420
           P  EG    + AP A        A      P    AP     P  P     P + + P  
Sbjct: 317 PDTEGREGDDLAPTAVC----TDAGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDV 372

Query: 421 APPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE 453
               A  + A      PA   P   A  A  A 
Sbjct: 373 RTGTAPTSLANVSHADPAVAQPTQAATLAGAAP 405

Length = 694

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 37/126 (29%), Positives = 41/126 (32%), Gaps = 5/126 (3%)

Query: 382 EGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEG----APPAEAPPPAEGAPAAEGAPAP 437
           EGA  A   P    A  AEG  A P  G   A+G    A P  AP            P P
Sbjct: 151 EGATNASLFPLGLAAFPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRP 210

Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
                A P      +    P       P+    AP A   P       P  P    EAPP
Sbjct: 211 TPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPG-GGEAPP 269

Query: 498 AESAPA 503
           A + PA
Sbjct: 270 ANATPA 275

Length = 401

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.2 bits (107), Expect = 8e-05
 Identities = 22/110 (20%), Positives = 31/110 (28%), Gaps = 5/110 (4%)

Query: 344 KPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP 403
           KP    PA    P+  A  +  +P    A     AP +  A    G PP          P
Sbjct: 380 KPVFTQPAAAPQPSAAAAAS-PSPSQSSAAAQPSAPQS--ATQPAGTPPTVSVDPPAAVP 436

Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE 453
             P    P A    PA+     +   +   +  P+   P           
Sbjct: 437 VNPPSTAPQA--VRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGN 484

Length = 614

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 44.4 bits (106), Expect = 8e-05
 Identities = 25/102 (24%), Positives = 28/102 (27%), Gaps = 12/102 (11%)

Query: 394 EGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA----------PA 443
           EGA A   A A  A     A  A    A    +   A   +PA  + A            
Sbjct: 78  EGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDAL--SPAARKLAAENGLDASAVKG 135

Query: 444 PPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAP 485
               G    E    A  A A       A     APAP    P
Sbjct: 136 TGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARP 177

Length = 407

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 23/69 (33%), Positives = 24/69 (34%)

Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
           A   P+A           APP   AP    A PA  A A PA     P A   PA  AD 
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADP 440

Query: 485 PPAEPAPPA 493
             A  A   
Sbjct: 441 AAAASAGDR 449

Length = 576

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 20/86 (23%), Positives = 23/86 (26%), Gaps = 9/86 (10%)

Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP-PAEGA 477
              P P    P A  AP+P    PAP       +     A  A  PP E           
Sbjct: 361 VPVPAPQPAKPTAA-APSPVRPTPAP-------STRPKAAAAANIPPKEPVRETATPPPV 412

Query: 478 PAPPADAPPAEPAPPAEAPPAESAPA 503
           P  P   P       A      + P 
Sbjct: 413 PPRPVAPPVPHTPESAPKLTRAAIPV 438

Length = 585

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 36/108 (33%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 336 EETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP-PAEGAPPAE 394
           E  E G P P   A     P A  APP   APP    PPA  A PA   P PA   P A 
Sbjct: 375 EALERGAPAPPSAAWGAPTPAAPAAPPPAAAPP---VPPAAPARPAAARPAPAPAPPAAA 431

Query: 395 GAPAAEGAPAPPAEGPPP-------AEGAPPAEAPPPAEGAPAAEGAP 435
             PA    PA  A             +G  PA      +G+P    A 
Sbjct: 432 APPARSADPAAAASAGDRWRAFVAFVKGKKPALGASLEQGSPLGVSAG 479

Length = 576

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 441 APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
             APPA     A  A   +  P  P   AP P    A  P    PPA   PP  AP A+ 
Sbjct: 121 GGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKP---TPPAAAKPPEPAPAAKP 177

Query: 501 AP 502
            P
Sbjct: 178 PP 179

Length = 418

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 22/91 (24%), Positives = 27/91 (29%)

Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
            G   P            PA A P       ++        APA   +       +    
Sbjct: 158 SGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANV 217

Query: 460 GAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
              A PA  APA P   AP P   A  + PA
Sbjct: 218 DTAATPAPAAPATPDGAAPLPTDQAGVSTPA 248

Length = 331

>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 39/147 (26%), Positives = 47/147 (31%), Gaps = 6/147 (4%)

Query: 357 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA 416
              A  A  A  A  A  A  A PAE    A  A  A  A   E A         PA   
Sbjct: 268 RAAAREARAAAAAPAATAA-AAAPAEEPAVAPMA--AIRAAHVETAADKGERAAKPAAAD 324

Query: 417 PPAEAPPPAEGA---PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
             A+ P     A    A + A A    A  P  + A  A  +    GA A  A   PA  
Sbjct: 325 KAADKPADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGASADAAARTPARA 384

Query: 474 AEGAPAPPADAPPAEPAPPAEAPPAES 500
            + A       P       A+A  A++
Sbjct: 385 RDAAAPDADTPPGGASLAAAQARVADA 411

Length = 413

>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 40/141 (28%), Positives = 43/141 (30%), Gaps = 4/141 (2%)

Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPP---AEGAPPAEGAPPAEGAPAAEGAPAPPAEG 409
            A  A  A  A  A  A  AP  E A     A  A   E A       A   A    A+ 
Sbjct: 270 AAREARAAAAAPAATAAAAAPAEEPAVAPMAAIRAAHVETAADKGERAAKPAAADKAADK 329

Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
           P     A    A  PAE AP A   PA     PA  +   P A  A  A   PA   + A
Sbjct: 330 PADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGA-SADAAARTPARARDAA 388

Query: 470 PAPPAEGAPAPPADAPPAEPA 490
                         A  A  A
Sbjct: 389 APDADTPPGGASLAAAQARVA 409

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 29/149 (19%), Positives = 47/149 (31%), Gaps = 5/149 (3%)

Query: 337 ETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP----PAEGAPP 392
            +    P    E  A G  P   +  +  +P +   PP+  + P    P        +P 
Sbjct: 101 GSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPN 160

Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA 452
            + +   + +     E P P    P  ++P P +       +P P      P    +P  
Sbjct: 161 QQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQS-ETPTSSPPPQSPPDEPGEPQSPTP 219

Query: 453 EGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
           + AP      A   E  P  P    P  P
Sbjct: 220 QQAPSPNTQQAVEHEDEPTEPEREGPPFP 248

Length = 413

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 38/189 (20%), Positives = 62/189 (32%), Gaps = 3/189 (1%)

Query: 314 SATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAP 373
             T  P +++V +   R+  S  ET       E E    G P   G+       P+    
Sbjct: 51  PTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGS 110

Query: 374 P---AEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA 430
               A G  P   +  +  +P +   P +  +   P E  PP    P     P +   P+
Sbjct: 111 AEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPS 170

Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPA 490
            E +P   E   + P   +P    +     +P P +        +      A +P  + A
Sbjct: 171 HEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQA 230

Query: 491 PPAEAPPAE 499
              E  P E
Sbjct: 231 VEHEDEPTE 239

Length = 413

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 44.1 bits (105), Expect = 2e-04
 Identities = 24/81 (29%), Positives = 25/81 (30%)

Query: 333 ASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPP 392
           A+          P     A        APPA  AP A   P A  A  A  A P   A  
Sbjct: 46  AAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAA 105

Query: 393 AEGAPAAEGAPAPPAEGPPPA 413
           A  A AA      P  G   A
Sbjct: 106 AAPAAAAVEDEVTPLRGAAAA 126

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 21/101 (20%), Positives = 22/101 (21%), Gaps = 3/101 (2%)

Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
           AP    P A    P    P     P A  A       P                  P   
Sbjct: 365 APQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP-VPPRPVAPPVPH 423

Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
            P  A     A  P      P       P E   A  A+G 
Sbjct: 424 TPESAPKLTRAAIPVDE--KPKYTPPAPPKEEEKALIADGD 462

Length = 585

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 32/79 (40%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP 472
             GAP   +       PAA  AP PA   P PPA  A  A   P    APAP    A AP
Sbjct: 378 ERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARP----APAPAPPAAAAP 433

Query: 473 PAEGA-PAPPADAPPAEPA 490
           PA  A PA  A A     A
Sbjct: 434 PARSADPAAAASAGDRWRA 452

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 34/96 (35%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 388 EGAPPAEGAPAAE-----GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
           + A  A GAP +E      A    A  PP A    P    P A  AP    AP     AP
Sbjct: 357 KMATLAPGAPVSELLDRLEALERGAPAPPSAAWGAPT---PAAPAAPPPAAAPPVPPAAP 413

Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
           A PA   P    AP    A APPA  A    A  A 
Sbjct: 414 ARPAAARPAP--APAPPAAAAPPARSADPAAAASAG 447

Length = 576

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 26/69 (37%), Positives = 26/69 (37%)

Query: 357 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA 416
                P  G     G   A GAP A  AP A  A PA G PAA  A  P A     A  A
Sbjct: 389 EGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPA 448

Query: 417 PPAEAPPPA 425
           P A   P  
Sbjct: 449 PAAAPQPAV 457

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 24/69 (34%), Positives = 25/69 (36%)

Query: 351 ADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGP 410
                P  G     G   A GAP A  AP A  A PA G P A  A   + A A  A   
Sbjct: 389 EGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPA 448

Query: 411 PPAEGAPPA 419
           P A   P  
Sbjct: 449 PAAAPQPAV 457

Length = 598

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 28/79 (35%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 383 GAPPAE----GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
           GAP +E    GAPPA    AA  A A      P    A      PPA   P    A  P 
Sbjct: 112 GAPLSEIDTGGAPPAAAPAAAAAAKAEKTT--PEKPKAAAPTPEPPAASKPTPPAAAKPP 169

Query: 439 EGAPAPPAEGAPRAEGAPP 457
           E APA      P A   P 
Sbjct: 170 EPAPAAKPPPTPVARADPR 188

Length = 418

>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 19/96 (19%), Positives = 24/96 (25%), Gaps = 7/96 (7%)

Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
           P  EG    + AP             P     P     P           A A P + + 
Sbjct: 317 PDTEGREGDDLAPTAVCTDAGLLPDTPLLPDAPEGSSDPV-------VPVAAATPVDASL 369

Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP 486
                  A  + A  +   PA       A  A A P
Sbjct: 370 PDVRTGTAPTSLANVSHADPAVAQPTQAATLAGAAP 405

Length = 694

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 24/75 (32%), Positives = 27/75 (36%)

Query: 427 GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPP 486
            A AA    APA  A       A   +   PA  A A  AE APA  A  A A  A + P
Sbjct: 63  AAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAP 122

Query: 487 AEPAPPAEAPPAESA 501
                       E+A
Sbjct: 123 EAAQARERRERGEAA 137

Length = 672

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 23/110 (20%), Positives = 28/110 (25%), Gaps = 5/110 (4%)

Query: 317 PQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAE 376
            QP   S       +Q   E     +  P    PA          P    P  +   P  
Sbjct: 92  YQPPYASAQPRQPVQQ-PPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQV 150

Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
              P     P   AP           P    +  P AE AP  + P   E
Sbjct: 151 APAP----QPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKE 196

Length = 333

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 43/216 (19%), Positives = 85/216 (39%), Gaps = 18/216 (8%)

Query: 23  EAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLL------RKKAAEEL 76
           E    +LEELE +  E++ R+EE             E   KL+  +      R+   EEL
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELES----LEEALAKLKEEIEELEEKRQALQEEL 795

Query: 77  K--REQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREI 134
           +   E+   A  R   ++      +   +  E EI +L     + I  LE    EL+ E+
Sbjct: 796 EELEEELEEAERRLDALERELESLEQRRERLEQEIEEL----EEEIEELEEKLDELEEEL 851

Query: 135 MLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREF 194
              + E+ EL +++ +L  +    +  ++ + E +  +L+++  E       +  ++ E 
Sbjct: 852 EELEKELEELKEELEELEAEKEE-LEDELKELEEEKEELEEELRELE-SELAELKEEIEK 909

Query: 195 SMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESA 230
             E  E+ +      E E  +    + E   +    
Sbjct: 910 LRERLEELEAKLERLEVELPELEEELEEEYEDTLET 945

Length = 1163

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 25/76 (32%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
                      G PP  G  P     PA  A     A APA G PA      P A  A  
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAP---GAPAAAAAPGAAAAAPAAGGPAAALAAVPDA--AAA 442

Query: 458 AEGAPAPPAEGAPAPP 473
           A   PAP A   PA  
Sbjct: 443 AAAPPAPAAAPQPAVR 458

Length = 598

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 21/99 (21%), Positives = 30/99 (30%), Gaps = 1/99 (1%)

Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE-GAPAPPAEGAPRAEGAPPAEGAPAP 464
             +G   + G  P +   P    PAA   P+ A   +P+P    A     AP +   PA 
Sbjct: 363 TQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAG 422

Query: 465 PAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
                   P    P  P    P    P       +   +
Sbjct: 423 TPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVS 461

Length = 614

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 25/78 (32%), Positives = 27/78 (34%), Gaps = 4/78 (5%)

Query: 359 GAPPAE----GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAE 414
           GAP +E    GAPPA     A  A   +  P    A      P A   P PPA   PP  
Sbjct: 112 GAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEP 171

Query: 415 GAPPAEAPPPAEGAPAAE 432
                  P P   A   E
Sbjct: 172 APAAKPPPTPVARADPRE 189

Length = 418

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.5 bits (101), Expect = 4e-04
 Identities = 26/144 (18%), Positives = 36/144 (25%), Gaps = 2/144 (1%)

Query: 310 MSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGA-PPAEGAPP 368
            ++  AT  P                       P             A      A+GA  
Sbjct: 378 AASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437

Query: 369 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA 428
           A+ + PA  +         E       AP+A    AP  +     +   P E        
Sbjct: 438 AKKSEPAAASRARPVNSALERLASVRPAPSAL-EKAPAKKEAYRWKATNPVEVKKEPVAT 496

Query: 429 PAAEGAPAPAEGAPAPPAEGAPRA 452
           P A       E  P   A+ A  A
Sbjct: 497 PKALKKALEHEKTPELAAKLAAEA 520

Length = 647

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 53/245 (21%), Positives = 97/245 (39%), Gaps = 26/245 (10%)

Query: 3    EETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKK 62
            EE   A E   +A  A   DEAK+ K EE ++K    +++ EEA  A             
Sbjct: 1299 EEKKKADEAKKKAEEAKKADEAKK-KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD 1357

Query: 63   KLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYN 122
            +      K  A E K+E+ ++  +  +   E   +  +    AE++     ++    +  
Sbjct: 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED-----KKKADELKK 1412

Query: 123  LEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEF-- 180
              A K + D           E  K+  + +        KK ++   K  + +KKA E   
Sbjct: 1413 AAAAKKKAD-----------EAKKKAEEKKKA---DEAKKKAEEAKKADEAKKKAEEAKK 1458

Query: 181  --NFRSQLKAVKKREFSMEDAEKEKKPEWVKEP--ESKKKRIPIPEPEPEPESATDASDV 236
                + + +  KK + + + AE+ KK +  K+   E+KKK     +     + A +A   
Sbjct: 1459 AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA 1518

Query: 237  EDGKE 241
            E+ K+
Sbjct: 1519 EEAKK 1523

Length = 2084

>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 26/113 (23%), Positives = 34/113 (30%), Gaps = 6/113 (5%)

Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
            +  PP +    A+GA +  A    PA     A  P       A E          A   
Sbjct: 196 GDLLPPGQAREQAQGAKSATAA---PATVPQAAPLPQAQPKKAATEEELIADAKKAAT-- 250

Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
            G P A  A  A+  P P  +   A   + A A        + A      P E
Sbjct: 251 -GEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGKLAEGVTVTPVE 302

Length = 423

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 26/70 (37%), Positives = 27/70 (38%)

Query: 338 TEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 397
            EG      G     G   A GAP A  AP A  A PA G P A  A   + A  A   P
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP 447

Query: 398 AAEGAPAPPA 407
           A   AP P  
Sbjct: 448 APAAAPQPAV 457

Length = 598

>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 24/96 (25%), Positives = 28/96 (29%), Gaps = 8/96 (8%)

Query: 355 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAE 414
           P  EG    + AP A        A      P    AP     P    A A P +   P  
Sbjct: 317 PDTEGREGDDLAPTAVC----TDAGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDV 372

Query: 415 GAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
               A    P   A  +   PA A+   A    GA 
Sbjct: 373 RTGTA----PTSLANVSHADPAVAQPTQAATLAGAA 404

Length = 694

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 43/134 (32%), Positives = 50/134 (37%), Gaps = 8/134 (5%)

Query: 364 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGP--PPAEGAPPAEA 421
           EGA  A   P    A PAEG   A   P  EG+      PA P   P   PA+   PA  
Sbjct: 151 EGATNASLFPLGLAAFPAEGTLAA--PPLGEGSADGSCDPALPLSAPRLGPADVFVPATP 208

Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
            P      + E  P P+     P       +      +    P AEG PAPP  G     
Sbjct: 209 RPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGG---- 264

Query: 482 ADAPPAEPAPPAEA 495
            +APPA   P  EA
Sbjct: 265 GEAPPANATPAPEA 278

Length = 401

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 21/79 (26%), Positives = 24/79 (30%), Gaps = 2/79 (2%)

Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
            +G    PA  PP    AP    P           APA A      P +  PR E     
Sbjct: 10  GKGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRE--RKP 67

Query: 459 EGAPAPPAEGAPAPPAEGA 477
           + A     E     P EG 
Sbjct: 68  KPASLWKLEDFVVEPQEGK 86

Length = 475

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 388 EGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
           EG  P  G P  E                P  +A P +        +       P+PP +
Sbjct: 144 EGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPED 203

Query: 448 GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
            +  ++ + P    PAP +  +  PP     +P   +PP  PA P   P  +  P
Sbjct: 204 PSSPSDSSLP----PAPSSFQSDTPP-PSPESPTNPSPPPGPAAPPPPPVQQVPP 253

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 42.2 bits (98), Expect = 5e-04
 Identities = 54/143 (37%), Positives = 63/143 (44%), Gaps = 2/143 (1%)

Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
           +   P  +  A A     A  AP    APPA+ A     A  A     A  A  A     
Sbjct: 207 KAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAK 266

Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPA-AEGAPAPAEGAPAPPAEGAPRAEGAPP 457
           A   PA  A  P  A   P   A PPA+ A A A+ A APA+ A AP    AP A+ A P
Sbjct: 267 AAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAP 326

Query: 458 AEGAPAPPAEGAPAPPAEGAPAP 480
              A  PPA+ A APPA+ A AP
Sbjct: 327 PAKAATPPAKAA-APPAKAAAAP 348

Length = 357

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 24/68 (35%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 415 GAPPAE-APPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
           GAP +E     A  A A   A A       P    A      PPA   P PPA   P  P
Sbjct: 112 GAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEP 171

Query: 474 AEGAPAPP 481
           A  A  PP
Sbjct: 172 APAAKPPP 179

Length = 418

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 22/46 (47%), Positives = 23/46 (50%)

Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
            EG  A  A  APA  AE A A PA A  A     A AP A +APA
Sbjct: 79  EEGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPA 124

Length = 464

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 6/91 (6%)

Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP 472
           A  APPA++    E  PAA  A AP   A  P    A R                 A   
Sbjct: 80  ATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHG------IDLSAVPG 133

Query: 473 PAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
                     D      AP +   PA +A A
Sbjct: 134 TGVTGRVTKEDIIKKTEAPASAQQPAPAAAA 164

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.2 bits (100), Expect = 6e-04
 Identities = 36/198 (18%), Positives = 48/198 (24%), Gaps = 45/198 (22%)

Query: 217 RIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPP 276
             P+PEPE  P+SA  A                 P     PP     P PP    P   P
Sbjct: 362 AAPLPEPEVPPQSAAPA---------ASAQATAAPTAAVAPPQAPAVPPPPASA-PQQAP 411

Query: 277 SPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHE 336
           +   P                               ++A  Q          L+R     
Sbjct: 412 AVPLPETT-------------------------SQLLAARQQ----------LQRAQGAT 436

Query: 337 ETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 396
           + +  EP     A    +     A         E AP  + A   +   P E        
Sbjct: 437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT 496

Query: 397 PAAEGAPAPPAEGPPPAE 414
           P A        + P  A 
Sbjct: 497 PKALKKALEHEKTPELAA 514

Length = 647

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 37/137 (27%), Positives = 43/137 (31%), Gaps = 1/137 (0%)

Query: 368 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEG 427
           P    PP     P +      G  P + +P       P    P   +  P A  P     
Sbjct: 649 PTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPA 708

Query: 428 APAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAP-PADAPP 486
           AP        A    A P   AP     P A    A P   AP      A AP  A  P 
Sbjct: 709 APPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPA 768

Query: 487 AEPAPPAEAPPAESAPA 503
           A P  P   PP ++ PA
Sbjct: 769 AAPGAPTPQPPPQAPPA 785

Length = 991

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.2 bits (100), Expect = 6e-04
 Identities = 26/68 (38%), Positives = 28/68 (41%)

Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP 405
              +P  G     G   A GAP A  AP A  A PA G P A  A   + A AA   PAP
Sbjct: 390 GPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAP 449

Query: 406 PAEGPPPA 413
            A   P  
Sbjct: 450 AAAPQPAV 457

Length = 598

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 430 AAEG-APAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
             EG + + A  APA  AE       A  A  A A  A    A PA  APA PA    A+
Sbjct: 78  LEEGESASDAGAAPAAAAE-------AAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAAD 130

Query: 489 PAPPA 493
           P  PA
Sbjct: 131 PDIPA 135

Length = 464

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADA 484
            EG  A++   APA  A A  A     A  A   + APAP A  APA      P  PA  
Sbjct: 79  EEGESASDAGAAPAAAAEAAAAA-PAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGT 137

Query: 485 P 485
            
Sbjct: 138 E 138

Length = 464

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 25/61 (40%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 438 AEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
            EG  A  A  AP    A  AE A A PA  A A   + APAP A A PA         P
Sbjct: 79  EEGESASDAGAAP----AAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134

Query: 498 A 498
           A
Sbjct: 135 A 135

Length = 464

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 24/99 (24%), Positives = 26/99 (26%)

Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA 452
            EG  A    PA   E       A  A AP  A   P+   A               P  
Sbjct: 75  EEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGT 134

Query: 453 EGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
                           APA   + APA  A AP     P
Sbjct: 135 GVTGRVTKEDIIKKTEAPASAQQPAPAAAAKAPANFTRP 173

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 24/90 (26%), Positives = 27/90 (30%), Gaps = 4/90 (4%)

Query: 371 GAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE--GA 428
            A P   +   +   PA  A  A  A A       PA      E      A P     G 
Sbjct: 81  TAAPPAKSGEEKEETPAASAAAAPTAAANR-PSLSPAARRLAKEHGIDLSAVPGTGVTGR 139

Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
              E      E APA   + AP A    PA
Sbjct: 140 VTKEDIIKKTE-APASAQQPAPAAAAKAPA 168

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional

 Score = 42.3 bits (99), Expect = 6e-04
 Identities = 32/129 (24%), Positives = 39/129 (30%), Gaps = 15/129 (11%)

Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA------------PPPAEGAPAAEGA 434
           +   PP   AP  +  P PP   P    G+ PA A            P   +   A    
Sbjct: 426 SSRQPPGAPAPRRDNDPPPP---PRARPGSTPACARRARAQRARDAGPEYVDPLGALRRL 482

Query: 435 PAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
           PA A   P P A  +P         G P  P              PPA APP +   P  
Sbjct: 483 PAGAAPPPEPAAAPSPATYYTRMGGGPPRLPPRNRATETLRPDWGPPAAAPPEQMEDPYL 542

Query: 495 APPAESAPA 503
            P  +    
Sbjct: 543 EPDDDRFDR 551

Length = 694

>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 12/147 (8%)

Query: 99  KDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRP 158
                  + E   L Q + + +   E     ++    LKD +I             F+  
Sbjct: 577 IKFHSQNQVEYKKLVQNWNKNLPLFEYDVEFMEIAHFLKDLKILASSD-------NFIL- 628

Query: 159 ILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKRE----FSMEDAEKEKKPEWVKEPESK 214
              K  + +    KL K   + NF++ L+ +           +    E K  W     +K
Sbjct: 629 FSSKRDEIDELIIKLNKNNYKVNFQNFLEKIFGGPKHIFAISKKLINEAKIYWKAINNTK 688

Query: 215 KKRIPIPEPEPEPESATDASDVEDGKE 241
           K  +  P  +P+    T  S     KE
Sbjct: 689 KSVVIKPLEKPKKYEKTSVSKENLEKE 715

Length = 725

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 34/151 (22%), Positives = 42/151 (27%), Gaps = 2/151 (1%)

Query: 350 PADGAPPAEGAPPAEGAPPAEGAP-PAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
           P    PP          P     P P         AP  EG P              P +
Sbjct: 339 PVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQ 398

Query: 409 GP-PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAE 467
            P  P +      A  PA+    A     PA+     PA   P A  A  AE   +  A 
Sbjct: 399 QPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAP 458

Query: 468 GAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
            +     +    P A  P  +   P E  P 
Sbjct: 459 QSTYQTEQTYQQPAAQEPLYQQPQPVEQQPV 489

Length = 1355

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 31/102 (30%), Positives = 35/102 (34%), Gaps = 2/102 (1%)

Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
            PA E  PA       P     P   P     APA   A A A+ A AP A   PRA+  
Sbjct: 104 EPATENKPAEVTTPVEP--MGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSP 161

Query: 456 PPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
            PA  A   P E   A  A+   A P         P  +   
Sbjct: 162 RPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTK 203

Length = 209

>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 22/93 (23%), Positives = 25/93 (26%), Gaps = 1/93 (1%)

Query: 392 PAEGAPAAEGAPAPPAEGPP-PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
                 AA   P+  A      AE     + P  A  A A       A+      A    
Sbjct: 232 APWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPA 291

Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
             E A  A  A  P  E  P P     P    D
Sbjct: 292 PKEAAKAAAAAAKPALEDKPRPLGIARPGGADD 324

Length = 400

>gnl|CDD|204055 pfam08764, Coagulase, Staphylococcus aureus coagulase

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 32/141 (22%)

Query: 116 YWQRIYNLEA-IKYELDREIMLKDFEITELGKQVNDLRGKFVRPIL--------KKVSKY 166
           YW +I +LE+     LD   +L+D++  E  K+  D + K +  IL        KK ++Y
Sbjct: 25  YWGKIKSLESQFSNALD---LLEDYQYGE--KEYKDAKDKLMTRILGEDQYLLEKKKAEY 79

Query: 167 ENKFAKLQKKAAEFNFRSQLKAVKKREF---------------SMEDAEKEKKPEWVKEP 211
           E K+ K  KK  E N  S+LK     ++               S++DA ++ K E VK+ 
Sbjct: 80  E-KYKKWYKKYKEENPNSKLKMKTFHKYNLYDLTMKEYNEISKSLKDAVEDFKKE-VKKI 137

Query: 212 ESKKKRIPIPEPEPEPESATD 232
           +SK   +  P  E E E ATD
Sbjct: 138 QSKNSDLK-PYSEEEEEKATD 157

Staphylococcus aureus secretes a cofactor called coagulase. Coagulase is an extracellular protein that forms a complex with human prothrombin, and activates it without the usual proteolytic cleavages. The resulting complex directly initiates blood clotting. Length = 282

>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 35/135 (25%), Positives = 42/135 (31%), Gaps = 9/135 (6%)

Query: 345 PEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
           P G A  +          A   P        +G+P    AP   G    E A    GAP 
Sbjct: 600 PYGLADVELDEEDTEDDDAVELPSTPSMGTQDGSPAPSAAP--AGYDIFEFAGDGTGAPH 657

Query: 405 PPAEGPPPAEGAPPAE----APPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAE---GAPP 457
           P A G   A+ A P        P   GA +     A    APA P   A   E       
Sbjct: 658 PVASGSNGAQHADPLGDLFSGLPSTVGASSPAFQAASGSQAPASPPTAASAIEDLFANGM 717

Query: 458 AEGAPAPPAEGAPAP 472
             G+   P   + AP
Sbjct: 718 GSGSQTVPLPISAAP 732

Length = 746

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.4 bits (98), Expect = 9e-04
 Identities = 30/87 (34%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA 466
           A+ P P E     +  PP+ G     G P       AP A  AP A  A PA G PA   
Sbjct: 375 ADLPTPDEALRRLQEGPPSPGGGGG-GPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAAL 433

Query: 467 EGAP-APPAEGAPAPPADAPPAEPAPP 492
              P A  A  AP  PA AP       
Sbjct: 434 AAVPDAAAAAAAPPAPAAAPQPAVRLN 460

Length = 598

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 19/99 (19%), Positives = 24/99 (24%), Gaps = 1/99 (1%)

Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
            +P     +P    P     P A  A       P          PP   APP    P + 
Sbjct: 369 AKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPES- 427

Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE 439
                 A  P   +      APP  E            +
Sbjct: 428 APKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLEQ 466

Length = 585

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 47/215 (21%), Positives = 56/215 (26%), Gaps = 33/215 (15%)

Query: 251 PPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLM 310
           P   E  PPP         E+P     P                    P + D       
Sbjct: 90  PSAGEPAPPPPHARRTSEPELPRPGRRPYE--------------GYGGPRADDRPPGLPR 135

Query: 311 SAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAE 370
                T +P             A     +  EP     A  D     +       AP   
Sbjct: 136 QDQLPTARP-------------AYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPY-- 180

Query: 371 GAPPAEGAPPAE-GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
            A PA  AP  E    P +   P       +     P    P  +     E PP A    
Sbjct: 181 -ASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVH 239

Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
              G P P E   AP     P A G   A+ APAP
Sbjct: 240 --RGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAP 272

Length = 617

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 30/117 (25%), Positives = 37/117 (31%), Gaps = 9/117 (7%)

Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPP--AEGAP----PAEGAPPAEGAPP 392
           +   P+P+     +   P    P   G P     P   A G P        A  A  AP 
Sbjct: 640 KTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAPQAPR 699

Query: 393 AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
             G P   G   PP + P  A  AP   +   +  AP     P P     A  AE  
Sbjct: 700 PGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPP---EPEPPGAEQADGAENQ 753

Length = 753

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 30/79 (37%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 427 GAPAAEGAPAPAEGAPAP-PAEGAPRAEGAPPAEG-APAPPAEGAPAPPAEGAPAPPADA 484
            AP+   A  PA G  A  P  G    +G  PA G  P+  A   PAP A  +P  P D 
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 485 PPAEPAPPAEAPPAESAPA 503
            P  PAPP    P   AP 
Sbjct: 439 AP--PAPPRSGIPPRPAPR 455

Length = 624

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 41.3 bits (98), Expect = 0.001
 Identities = 22/52 (42%), Positives = 24/52 (46%)

Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
              A PA  A    A  A A  A  APAP A A PA  AP A A P ++  A
Sbjct: 194 VAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHA 245

Length = 547

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.7 bits (97), Expect = 0.001
 Identities = 56/244 (22%), Positives = 107/244 (43%), Gaps = 17/244 (6%)

Query: 3    EETPAAAETPAEAAAASAEDEAKR-----LKLEELERKRAEVRRRMEEASGARRKKGFMT 57
            EE   A E   +A  A   DEAK+      K +E ++K  E +++ +EA  A   K    
Sbjct: 1454 EEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK---- 1509

Query: 58   PERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYW 117
             ++  + +     K A+E K+ +E +  +  +  +E+    K  D++ + E     +E  
Sbjct: 1510 -KKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEK----KKADELKKAEELKKAEEKK 1564

Query: 118  QRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKA 177
            +     EA K E D+ + L+  E  +  ++        +    KK+   E K A+  K  
Sbjct: 1565 KA---EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621

Query: 178  AEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVE 237
            AE   +++ +  K  +   ++AE++KK E +K+ E + K     E +   E    A + +
Sbjct: 1622 AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681

Query: 238  DGKE 241
              +E
Sbjct: 1682 KAEE 1685

Length = 2084

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 41.1 bits (95), Expect = 0.001
 Identities = 55/139 (39%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 344 KPEGEAPADGAPPAEGAPPAEGAPP---AEGAPPAEGAPPAEGA--PPAEGAPPAEGAPA 398
           K    A A  AP    APPA+ A     A  AP    APPA+ A  P    APPA+ A  
Sbjct: 218 KAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAP 277

Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
              A APPA+   P   A  A   P    A  A+ A APA+ A  P    AP A+ A P 
Sbjct: 278 PAKAAAPPAKAAAPPAKAAAA---PAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPP 334

Query: 459 EGAPAPPAEGAPAPPAEGA 477
             A APPA+ A AP  + A
Sbjct: 335 AKAAAPPAKAAAAPVGKKA 353

Length = 357

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 24/69 (34%), Positives = 24/69 (34%)

Query: 363 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
                P  G     G   A GAP A  AP A  A  A G PA      P A  A  A   
Sbjct: 389 EGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPA 448

Query: 423 PPAEGAPAA 431
           P A   PA 
Sbjct: 449 PAAAPQPAV 457

Length = 598

>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 36/104 (34%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
             +   E PP   G  PA   PP +  P A+  P P E    P  E     EG  PA   
Sbjct: 259 EESKGYEPPPAPSGGSPA---PPGDDRPEAKPEPGPVEDGA-PGRETGGEGEGPEPAGRD 314

Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA--PPAESAPA 503
            A   E  P PP    PAP AD P   P+  A    PP  + PA
Sbjct: 315 GAAGGEPKPGPPR---PAPDADRPEGWPSLEAITFPPPTPATPA 355

Length = 416

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 55/188 (29%), Positives = 61/188 (32%), Gaps = 36/188 (19%)

Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP-------PAEGAPA 398
            GEA ++ AP A     A        AP      PA  AP A G+        P  G   
Sbjct: 79  PGEAGSEPAPAAPEPEAAPEPEAPAPAPTPAAEAPAPAAPQAGGSGEATEVKMPELGESV 138

Query: 399 AEG-------APAPPAEGPPP----AEGAPPAEAPPPAEGAPAAEGAP------------ 435
            EG       A     E   P    +      E P P  G      AP            
Sbjct: 139 TEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPEDDTVEVGTVLA 198

Query: 436 --APAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPA 493
               A  APA PAE    A     +E AP P A    A P   APAP     PA+ A PA
Sbjct: 199 IIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPA----PAKTAAPA 254

Query: 494 EAPPAESA 501
            A P  S 
Sbjct: 255 AAAPVSSG 262

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 20/97 (20%), Positives = 25/97 (25%), Gaps = 6/97 (6%)

Query: 336 EETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 395
           E  EG +  P   A    A      P    AP     P      P   A P + + P   
Sbjct: 320 EGREGDDLAP--TAVCTDAGLLPDTPLLPDAPEGSSDP----VVPVAAATPVDASLPDVR 373

Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
              A  + A  +   P       A     A    A  
Sbjct: 374 TGTAPTSLANVSHADPAVAQPTQAATLAGAAPKGATH 410

Length = 694

>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 23/88 (26%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 417 PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG 476
           P  E     + AP A    A       P    AP     P    A A P + +      G
Sbjct: 317 PDTEGREGDDLAPTAVCTDAGL-LPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTG 375

Query: 477 -APAPPADAPPAEPAPPAEAPPAESAPA 503
            AP   A+   A+PA       A  A A
Sbjct: 376 TAPTSLANVSHADPAVAQPTQAATLAGA 403

Length = 694

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 23/57 (40%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 446 AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
            E    A   P    APAPP     A PA  A AP A AP AE  P  + P  E  P
Sbjct: 12  GEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEK-PKKDKPRRERKP 67

Length = 475

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 20/49 (40%), Positives = 24/49 (48%)

Query: 451 RAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAE 499
           + E   PA   P+P A  AP PPA+ A      A PA  AP AE P  +
Sbjct: 11  KGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKD 59

Length = 475

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 25/93 (26%), Positives = 28/93 (30%), Gaps = 1/93 (1%)

Query: 359 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG-APPAEGAPAAEGAPAPPAEGPPPAEGAP 417
            A P   +   +   PA  A  A  A        PA    A E      A       G  
Sbjct: 81  TAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRV 140

Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAP 450
             E       APA+   PAPA  A AP     P
Sbjct: 141 TKEDIIKKTEAPASAQQPAPAAAAKAPANFTRP 173

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 27/91 (29%), Positives = 30/91 (32%), Gaps = 3/91 (3%)

Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
           A  GAP+       P   AP              E     +    A  A GAP  +  P 
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEK--EVRSLRSAPTAAATAAGAPLPDFDPR 398

Query: 458 AEGAPAP-PAEGAPAPPAEGAPAPPADAPPA 487
             G PAP PA  A APP     A PA     
Sbjct: 399 PRGPPAPEPARSAEAPPLVAPAAAPAGLALR 429

Length = 504

>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 33/178 (18%), Positives = 70/178 (39%), Gaps = 31/178 (17%)

Query: 54  GFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAED--EIGD 111
                ++ K+L   L KK  +ELK+  E +  +++  +       ++ +  AE+  + G+
Sbjct: 273 EKFERDKIKQLASELEKKLEKELKK-LENKLEKQEDEL-------EELEKAAEELRQKGE 324

Query: 112 LCQEYWQRI------------YNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPI 159
           L     Q I            Y  E IK ELD +            K+   L+G  V  +
Sbjct: 325 LLYANLQLIEEGLKSVRLADFYGNEEIKIELD-KSKTPSENAQRYFKKYKKLKGAKV-NL 382

Query: 160 LKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKR 217
            +++S+ +   A  +                + + ++E+  +E   E + + + KK++
Sbjct: 383 DRQLSELKEAIAYYESAK-------TALEKAEGKKAIEEIREELIEEGLLKSKKKKRK 433

Length = 564

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 37/146 (25%), Positives = 45/146 (30%), Gaps = 8/146 (5%)

Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
           +    A    PA  AP    AP       +  A  ++    A  A    A        + 
Sbjct: 61  DTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSV 120

Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG--------APAPPAEGA 469
           P +AP  A    A+  +PA    A A     APR E A  A            AP     
Sbjct: 121 PRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAP 180

Query: 470 PAPPAEGAPAPPADAPPAEPAPPAEA 495
              P   APAP      A  A  A A
Sbjct: 181 VQAPVVAAPAPVPAIAAALAAHAAYA 206

Length = 559

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 51/233 (21%), Positives = 75/233 (32%), Gaps = 16/233 (6%)

Query: 220 IPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEI-------P 272
           IP     P+ +  A   +     P+ PE   PP+EE PP P+     P+          P
Sbjct: 323 IPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKP 382

Query: 273 PTPPSPVTPNPEELWLYLKDTVSA---SNPVSIDDL-----VEKLMSAVSATPQPLLKSV 324
           PT P P  P+         D V+     + V            +     +   +PL    
Sbjct: 383 PTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYA 442

Query: 325 VKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 384
             + L+   S   T      P   + +   P      PA  A  A   PPA   P +  A
Sbjct: 443 RYEDLKPPTSPSPTAPTGVSPSVSSTS-SVPAVPDTAPATAATDAAAPPPANMRPLSPYA 501

Query: 385 PPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
              +  PP   +PAA      P+      +    A     A+    A+  P P
Sbjct: 502 VYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRP 554

Length = 576

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 23/207 (11%)

Query: 27  LKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKREQE---RR 83
           L  +ELE KRA++    + ++ A         E  + L L +R KA EEL+++ E     
Sbjct: 77  LMQKELEHKRAQIELERKASTLAEN----YERELDRNLELEVRLKALEELEKKAENEAAE 132

Query: 84  ALERKRVIDERCGEPKDTDDMAE----DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDF 139
           A E  +++       KD  D       +E  D  +E  + I  ++    E+       D 
Sbjct: 133 AEEEAKLL-------KDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEMQCRAQNADT 185

Query: 140 EITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDA 199
           E+  L  ++ +LR +      K++++ E K   L  + A     S    +K  E  ++  
Sbjct: 186 ELKLLESELEELREQL-EECQKELAEAEKKLQSLTSEQASSADNSVK--IKHLEEELKRY 242

Query: 200 EKEKKPEWVKEPESKKKRIPIPEPEPE 226
           E++   E VK  + +  +IP  E E  
Sbjct: 243 EQDA--EVVKSMKEQLLQIPELERELA 267

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
           P  EG      AP  AE        G  R   AP  + A APP      PPA     PP 
Sbjct: 873 PRTEGGVRVGYAPTLAEALDQVFGPGTGRVATAPGGDAASAPPPGA--GPPAPPQAVPPP 930

Query: 483 DAPPAEPAPPA--EAPPAESA 501
                  APP   + PPA  A
Sbjct: 931 RTTQPPAAPPRGPDVPPAAVA 951

Length = 991

>gnl|CDD|234994 PRK01973, PRK01973, septum formation inhibitor; Reviewed

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 21/57 (36%), Positives = 23/57 (40%)

Query: 415 GAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
            AP A+A   A  A A   APA A  A A  A  A  A   PP   AP   A  +  
Sbjct: 107 RAPAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQSQT 163

Length = 271

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 52/242 (21%), Positives = 63/242 (26%), Gaps = 17/242 (7%)

Query: 235 DVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPV-------TPNPEELW 287
                           P        P P PE         PP  V        P      
Sbjct: 253 AAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAP 312

Query: 288 LYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEG 347
                   A +    DD  +  M  VS  P+P     +    RR+ +       E    G
Sbjct: 313 PDPPPPAPAGDAEEEDD-EDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAG 371

Query: 348 EAPADGAPPAEG---APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
                 A        +      P A G    +   PA   P +   P     PA   AP 
Sbjct: 372 RHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPA--SAPP 429

Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
           PPA   P AE        PP E  P A         AP  P +   +A  A      P P
Sbjct: 430 PPATPLPSAEPGSDDGPAPPPERQPPAPATEP----APDDPDDATRKALDALRERRPPEP 485

Query: 465 PA 466
           P 
Sbjct: 486 PG 487

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 48/200 (24%), Positives = 55/200 (27%), Gaps = 38/200 (19%)

Query: 338 TEGGEPKPEGEAPADGAPPAEG--APPAEGAPPAEGAPPAEGAPPAEGAPPAEG------ 389
             G  P PE  AP   A P +G       GAP A  APP    P   G    E       
Sbjct: 275 ATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAM 334

Query: 390 -------------------------APPAEGAPAAEGAPAPPAEGPPPA--EGAPPAEAP 422
                                     PP+     + G   P     P      A  A  P
Sbjct: 335 EVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATP 394

Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
                    +  PA    A  P     P    APP    P P AE       +G   PP 
Sbjct: 395 FARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEP---GSDDGPAPPPE 451

Query: 483 DAPPAEPAPPAEAPPAESAP 502
             PPA    PA   P ++  
Sbjct: 452 RQPPAPATEPAPDDPDDATR 471

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 21/80 (26%), Positives = 21/80 (26%)

Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGA 402
             P    PA  A PA  AP A  A        A   P                 PA   A
Sbjct: 416 APPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA 475

Query: 403 PAPPAEGPPPAEGAPPAEAP 422
              PA  P  A   P  E  
Sbjct: 476 APAPAAAPAAARLTPTEEGD 495

Length = 618

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 22/77 (28%), Positives = 24/77 (31%), Gaps = 4/77 (5%)

Query: 332 QASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 391
            A+          P  +APA  AP    A      P    A  A  AP A  A  A  AP
Sbjct: 49  AAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAP 108

Query: 392 PAEGAPAAE----GAPA 404
            A           GA A
Sbjct: 109 AAAAVEDEVTPLRGAAA 125

Length = 1228

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 29/154 (18%), Positives = 38/154 (24%)

Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
           +     P       A   P           P    A            PAA+ A    ++
Sbjct: 759 SNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASK 818

Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG 468
               +               P A   P PA  + +  ++ A     A    G   P    
Sbjct: 819 RKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPE 878

Query: 469 APAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
             A P   AP   A A P   AP     PA    
Sbjct: 879 PRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVK 912

Length = 1352

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 56/260 (21%), Positives = 72/260 (27%), Gaps = 32/260 (12%)

Query: 211  PESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEE 270
            PE    ++ I  P   P+        E  +    P   E P    V P         V E
Sbjct: 834  PEMASGKVWIRYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAE 893

Query: 271  IPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLR 330
            +   P     P PEE        V  ++P  I   V +    ++ +   + + V      
Sbjct: 894  VVEEPVVVAEPQPEE-----VVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVA----- 943

Query: 331  RQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGA 390
                 E  E      +  A  + A        AE  P     P A           AE A
Sbjct: 944  -----EHAEPVVEPQDETADIEEAAETAEVVVAE--PEVVAQPAAP--------VVAEVA 988

Query: 391  PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGA----PAPPA 446
               E   A E   AP        E      A  P   APA E  P     +    P    
Sbjct: 989  AEVETVTAVEPEVAPAQVPEATVEH---NHATAPMTRAPAPEYVPEAPRHSDWQRPTFAF 1045

Query: 447  EGAPRAEGAPPAEGAPAPPA 466
            EG   A G      A AP  
Sbjct: 1046 EGKGAAGGHSATHHASAPAT 1065

Length = 1068

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 30/140 (21%), Positives = 34/140 (24%), Gaps = 6/140 (4%)

Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
           AP        E   P   A   +  P A    P          P  P  G  P EG    
Sbjct: 67  APIISETLSRELGRPIRIAITVD--PSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGP 124

Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
            A     G P  +  P      PA PA       GA P         +         AP 
Sbjct: 125 RADDRPPGLPRQDQLPTAR---PAYPAYQQRPEPGAWPRAADDYGW-QQQRLGFPPRAPY 180

Query: 480 PPADAPPAEPAPPAEAPPAE 499
               +   E     E   A 
Sbjct: 181 ASPASYAPEQERDREPYDAG 200

Length = 617

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 27/174 (15%), Positives = 39/174 (22%), Gaps = 10/174 (5%)

Query: 340 GGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPP------- 392
           GGE      A                +  ++             A       P       
Sbjct: 65  GGETAKLSAAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPS 124

Query: 393 ---AEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
                  P  +   AP ++  P                    + AP   +       +G 
Sbjct: 125 LWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGM 184

Query: 450 PRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
           P  + A P +G P  P      P        P    PA    PA+ P     P 
Sbjct: 185 PPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQ 238

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 26/139 (18%), Positives = 40/139 (28%), Gaps = 14/139 (10%)

Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEG 401
             + + +A           P  +  P +        + P   + P             E 
Sbjct: 154 LDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFP----------SPPED 203

Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
             +P     PPA  +  ++ PPP+  +P     P      P PP +  P    A P    
Sbjct: 204 PSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPT--- 260

Query: 462 PAPPAEGAPAPPAEGAPAP 480
             P A   PAP        
Sbjct: 261 -PPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 17/77 (22%), Positives = 24/77 (31%)

Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
              A+  PP +  PP          P      P PP       + +  A       +   
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577

Query: 470 PAPPAEGAPAPPADAPP 486
           P  P E  P+P  D+ P
Sbjct: 578 PPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 32/142 (22%), Positives = 42/142 (29%), Gaps = 6/142 (4%)

Query: 362 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA 421
           P EG      A      PP+   P +   P +    +   A          A      EA
Sbjct: 631 PKEGDGKKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEA 690

Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
              +  APA    P P +    PP E AP       A   P   AEG  +   E A    
Sbjct: 691 ALASGSAPAPPPVPDPYD---RPPWEEAPEVA---SANDGPNNAAEGNLSESVEDASNSE 744

Query: 482 ADAPPAEPAPPAEAPPAESAPA 503
             A   +     +      +PA
Sbjct: 745 LQAVEQQATHQPQVQAEAQSPA 766

Length = 944

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.9 bits (95), Expect = 0.002
 Identities = 55/252 (21%), Positives = 104/252 (41%), Gaps = 5/252 (1%)

Query: 3    EETPAAAETPAEAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKK 62
            +E   A E         AE+  K  + + +  ++AE  ++ EEA      K +   ++ K
Sbjct: 1549 DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608

Query: 63   KLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYN 122
                  +K    ++K E+ ++A E K+ +++   +  +    AE+       E   +I  
Sbjct: 1609 AEEA--KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK---AEEENKIKA 1663

Query: 123  LEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNF 182
             E  K   + +   ++ +  E  ++      K      KK  + + K A+ +KKA E   
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723

Query: 183  RSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKET 242
              +   +K  E   E  E +KK E  K+ E +KK+I   + E E ++     + E   E 
Sbjct: 1724 AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783

Query: 243  PLPPEGEQPPVE 254
             L  E E+  +E
Sbjct: 1784 ELDEEDEKRRME 1795

Length = 2084

>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 31/118 (26%), Positives = 41/118 (34%), Gaps = 13/118 (11%)

Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEG-------------APAPAEGAPAPP 445
           AE A     +    A+G   A    PA GA   E                    G   PP
Sbjct: 142 AEIAQEVGQQANVSAKGDGGAAQSGPATGADGGEAYRDPFDPDFWSKQVEVTTAGDLLPP 201

Query: 446 AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
            +   +A+GA  A  APA   + AP P A+   A   +   A+    A   PA +A  
Sbjct: 202 GQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAANAAK 259

Length = 423

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 22/80 (27%), Positives = 25/80 (31%)

Query: 367 PPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
            P E     +  PP+ G              A   A AP A    PA G P A      +
Sbjct: 379 TPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPD 438

Query: 427 GAPAAEGAPAPAEGAPAPPA 446
            A AA   PAPA        
Sbjct: 439 AAAAAAAPPAPAAAPQPAVR 458

Length = 598

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 22/71 (30%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 344 KPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP 403
            P  E    GAPPA     A  A   +  P    A      PPA   P     PAA   P
Sbjct: 113 APLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPT---PPAAAKPP 169

Query: 404 APPAEGPPPAE 414
            P     PP  
Sbjct: 170 EPAPAAKPPPT 180

Length = 418

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 433 GAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG---APAPPAEGAPAPPADAPPAEP 489
                   APA P +  P     P    APAP  +    A   P++      A   PA P
Sbjct: 169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAP 228

Query: 490 APPAEAPPAESAPA 503
           A P  A P  +  A
Sbjct: 229 ATPDGAAPLPTDQA 242

Length = 331

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 31/219 (14%)

Query: 19  SAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAAEELKR 78
             E++ K+  LEELE+K  E  +  E+    + +   +  E +K   L  +    E+   
Sbjct: 507 ELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD 566

Query: 79  EQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDR------ 132
           E E    E  + ++E   E  +     E+ + +L + ++     L+  + EL+R      
Sbjct: 567 ELEEELAELLKELEELGFESVEEL---EERLKEL-EPFYNEYLELKDAEKELEREEKELK 622

Query: 133 -----------EIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAE-F 180
                      E+   +  + EL K++ +L  K+         +YE    +  + + E  
Sbjct: 623 KLEEELDKAFEELAETEKRLEELRKELEELEKKY------SEEEYEELREEYLELSRELA 676

Query: 181 NFRSQLKAVKK-REFSMEDAEKEKKPEWVKEPESKKKRI 218
             R++L+ ++K RE   +  EK K  E ++E E  KK +
Sbjct: 677 GLRAELEELEKRREEIKKTLEKLK--EELEEREKAKKEL 713

Length = 880

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 21/57 (36%), Positives = 23/57 (40%)

Query: 370 EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAE 426
           E A  A  AP A     A     A  A A + APAP A   P AE A   + P   E
Sbjct: 82  ESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTE 138

Length = 464

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPA 474
           E+   A  APAA  A A A    A  A  A +A  AP A  APA      P  PA
Sbjct: 82  ESASDAGAAPAAA-AEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPA 135

Length = 464

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 19/51 (37%), Positives = 20/51 (39%)

Query: 382 EGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
           E A  A  AP A    AA    A  A     A  AP A A P AE A   +
Sbjct: 82  ESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPD 132

Length = 464

>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 43/159 (27%), Positives = 49/159 (30%), Gaps = 10/159 (6%)

Query: 329 LRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 388
           LR     E     E +    APA  A     A PAE    A  A                
Sbjct: 260 LRSPERKERAAAREARAAAAAPAATA---AAAAPAEEPAVAPMAAIRAAHVETAADKGER 316

Query: 389 GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
            A PA    AA+     P      AE   PAEA P A   PA + A   +  A  P A  
Sbjct: 317 AAKPAAADKAADKPADRPDAAEKAAE--KPAEAAPRAADKPAGQAADPASSSADKPGA-- 372

Query: 449 APRAEGAPPA---EGAPAPPAEGAPAPPAEGAPAPPADA 484
           +  A    PA   + A               A A  ADA
Sbjct: 373 SADAAARTPARARDAAAPDADTPPGGASLAAAQARVADA 411

Length = 413

>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 28/128 (21%), Positives = 33/128 (25%), Gaps = 6/128 (4%)

Query: 376 EGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPP-AEGAPPAEAPPPAEGAPAAEGA 434
           E       A  A      +     +G   P        A   PP+EA  P         A
Sbjct: 200 EAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAA 259

Query: 435 PAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
                 AP   A+ A   E  P +  A A      PAP      A  A  P  E  P   
Sbjct: 260 LKTPATAPKAAAKNAKAPEAQPVSGTAAA-----EPAPKEAAKAAAAAAKPALEDKPRPL 314

Query: 495 APPAESAP 502
                   
Sbjct: 315 GIARPGGA 322

Length = 400

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 24/90 (26%), Positives = 26/90 (28%), Gaps = 7/90 (7%)

Query: 407 AEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA 466
           A G  P+EG      P PA             E      A           A  A AP  
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSA-------PTAAATAAGAPLP 393

Query: 467 EGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
           +  P P    AP P   A       PA AP
Sbjct: 394 DFDPRPRGPPAPEPARSAEAPPLVAPAAAP 423

Length = 504

>gnl|CDD|237381 PRK13419, PRK13419, F0F1 ATP synthase subunit A; Provisional

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 17/51 (33%), Positives = 18/51 (35%)

Query: 427 GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
            A A+  A A A  A A  A  AP  E         A  AE A     E A
Sbjct: 20  AAFASAEAAAEAHHASAAAAAAAPAGEHGAAVHAEAAAHAEQAEGGHEEKA 70

Length = 342

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 27/76 (35%), Positives = 28/76 (36%)

Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
            PA   A   P   PP    A PA A PP    PAA  AP P +   APP   A      
Sbjct: 33  LPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPP 92

Query: 456 PPAEGAPAPPAEGAPA 471
           PP     APP      
Sbjct: 93  PPPVDPNAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 31/137 (22%), Positives = 46/137 (33%), Gaps = 1/137 (0%)

Query: 329 LRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 388
            RR            +    A  DG+  ++  P     PP     P    P A    P +
Sbjct: 274 KRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPPPVRRPRVKHPEAGKEEP-D 332

Query: 389 GAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEG 448
           GA  AE    A+ A +  ++G   A+        P +  A A+        G+P      
Sbjct: 333 GARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFGSPPLDLTT 392

Query: 449 APRAEGAPPAEGAPAPP 465
           + R   +P    AP PP
Sbjct: 393 SLRHMPSPSVTSAPEPP 409

Length = 418

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 25/102 (24%), Positives = 25/102 (24%), Gaps = 18/102 (17%)

Query: 349 APADGAPPAEGAPPAEGAPPAEGAPP------------------AEGAPPAEGAPPAEGA 390
           A       A  A     AP AE AP                   A      E   PA  A
Sbjct: 61  AAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPA 120

Query: 391 PPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
             A    AA       A  P P   A  A A   A  A    
Sbjct: 121 ERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARIER 162

Length = 484

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 42/197 (21%), Positives = 87/197 (44%), Gaps = 13/197 (6%)

Query: 14  EAAAASAEDEAKRLK--LEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKK 71
           EA     E+E K LK  L  LE    E+RR++EE     R+   +  E       L + +
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEE---LERQLEELKRELAALEEELEQLQ 736

Query: 72  AAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEY----WQRIYNLEAIK 127
           +  E   E+     E    + ER  E ++  +  E+ +  L +E      +R    E ++
Sbjct: 737 SRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELE 796

Query: 128 YELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLK 187
            EL+ E+   +  +  L +++  L  +  R   +++ + E +  +L++K  E     +L+
Sbjct: 797 -ELEEELEEAERRLDALERELESLEQRRERLE-QEIEELEEEIEELEEKLDE--LEEELE 852

Query: 188 AVKKREFSMEDAEKEKK 204
            ++K    +++  +E +
Sbjct: 853 ELEKELEELKEELEELE 869

Length = 1163

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 9/125 (7%)

Query: 153 GKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPE 212
           G      + +++ +  K     K   E+ FR +L  ++  E    D      P     P+
Sbjct: 332 GGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELVRNDGGVAPSP--AGSPD 389

Query: 213 SKKKRIPIPEPEPE-------PESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPE 265
            KKK      P+P+       PE+            +   PE + P     P PP P+  
Sbjct: 390 VKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQAS 449

Query: 266 PPVEE 270
            P   
Sbjct: 450 APRNV 454

Length = 620

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 21/122 (17%), Positives = 34/122 (27%), Gaps = 2/122 (1%)

Query: 336 EETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 395
           +E +         +             A  + P   +P     P     P +        
Sbjct: 155 DEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPP 214

Query: 396 APAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
           AP++  +  PP     P   +PP     P    P  +  P  +   P PP+  A  A   
Sbjct: 215 APSSFQSDTPPPSPESPTNPSPPPGPAAPPP--PPVQQVPPLSTAKPTPPSASATPAPIG 272

Query: 456 PP 457
             
Sbjct: 273 GI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 24/80 (30%), Positives = 26/80 (32%)

Query: 379 PPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
            P E     +  PP+ G           A G P A  AP A A  PA G PAA  A  P 
Sbjct: 379 TPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPD 438

Query: 439 EGAPAPPAEGAPRAEGAPPA 458
             A A        A      
Sbjct: 439 AAAAAAAPPAPAAAPQPAVR 458

Length = 598

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 35/113 (30%), Positives = 39/113 (34%), Gaps = 3/113 (2%)

Query: 356 PAEG--APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
           PAEG  A P  G   A+G+        A    PA+   PA   P      A P   P P+
Sbjct: 167 PAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPR-TTASPETTPTPS 225

Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA 466
               P     PA     A         A   PA   P    APPA   PAP A
Sbjct: 226 TTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEA 278

Length = 401

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 40.5 bits (94), Expect = 0.003
 Identities = 59/291 (20%), Positives = 85/291 (29%), Gaps = 26/291 (8%)

Query: 207 WVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLP-----PEGEQPPVEEVPPPPE 261
           W    E   +  P+   +  P   T A     G +T  P     PEG  P   +   P  
Sbjct: 333 WAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEG-YPQQSQYAQPAV 391

Query: 262 PEPEPPVEEIPPTPP--SPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQP 319
              EP  + + P  P  +P    P +   Y       +         E+ ++  +   + 
Sbjct: 392 QYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEE 451

Query: 320 LLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAP 379
                      +Q++       + +   + PA   P  +   P E  P  E  P  E   
Sbjct: 452 -----------QQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETK 500

Query: 380 PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE 439
           PA   PP       E   A E         P P     P       +    A   P  A 
Sbjct: 501 PAR--PPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAA 558

Query: 440 GAPAPPAEGAPRAEGAPPAEGAPAPPA-----EGAPAPPAEGAPAPPADAP 485
            A +P A G  +A  A  A    A P       G P P  +    P    P
Sbjct: 559 AAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRP 609

Length = 1355

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 42/167 (25%), Positives = 50/167 (29%), Gaps = 9/167 (5%)

Query: 342 EPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEG 401
           +P+    APA   P  +         PA+    A  AP    A  A  A   +   A + 
Sbjct: 402 QPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAP-APEQPVAGNAWQAEEQQSTFAPQS 460

Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA--------EGAPRAE 453
                     PA   P  + P P E  P  E  P   E  PA P         E   R  
Sbjct: 461 TYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRARER 520

Query: 454 GAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAES 500
               A   P P     P P      AP   A P   A  A +P A  
Sbjct: 521 EQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASG 567

Length = 1355

>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 29/107 (27%), Positives = 32/107 (29%), Gaps = 14/107 (13%)

Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAP---PAEGAPPAEGAPAAEGAPAPPAEGPPPAE 414
           E    A     A   PP+E A P         A   P      AA+ A AP A+      
Sbjct: 227 EVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTA 286

Query: 415 GAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
            A PA        A AA            P  E  PR  G     GA
Sbjct: 287 AAEPAPKEAAKAAAAAA-----------KPALEDKPRPLGIARPGGA 322

Length = 400

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 27/141 (19%), Positives = 39/141 (27%), Gaps = 4/141 (2%)

Query: 314 SATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAP----PA 369
           S+ P    K   +     +A+  ET         E       PA   PP    P    P 
Sbjct: 266 SSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPPPVRRPRVKHPE 325

Query: 370 EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
            G    +GA  AE   PA+ A       ++           P +  A  +      +   
Sbjct: 326 AGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFGS 385

Query: 430 AAEGAPAPAEGAPAPPAEGAP 450
                       P+P    AP
Sbjct: 386 PPLDLTTSLRHMPSPSVTSAP 406

Length = 418

>gnl|CDD|178806 PRK00030, minC, septum formation inhibitor; Provisional

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 24/94 (25%), Positives = 29/94 (30%), Gaps = 2/94 (2%)

Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPP 412
           GA  A   P     P A      + APP + A P    P A    AA+  P         
Sbjct: 89  GARDAGLVPVELSTPVARAPQVIDTAPPNDVATPVPSVPEATAEAAAKAGPQDDEADGEQ 148

Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
           A+ AP     P +    AA            PP 
Sbjct: 149 ADEAPAHN--PESVPTRAARETTEANRPTATPPQ 180

Length = 292

>gnl|CDD|233927 TIGR02557, HpaP, type III secretion protein HpaP

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEG-APAPPAEGAPRAEGAPPAEGAPAP 464
             +G   A  AP   A P     P A+     A   AP P  E  P  +   P   A   
Sbjct: 1   IIQGARLARPAPADPARPARRRTPLAQLRRRDALAYAPPPRPEPPPPCDEDRPEPRADTR 60

Query: 465 PAEGAPAPPAEGAPAPPADAPPAE 488
            ++  P  P +  PA P D P A 
Sbjct: 61  ASDPPPEAPTDADPAQPPDDPDAS 84

This family of genes is always found in type III secretion operons, althought its function in the processes of secretion and virulence is unclear. Hpa stands for Hrp-associated gene, where Hrp stands for hypersensitivity response and virulence. Length = 201

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 25/148 (16%), Positives = 34/148 (22%)

Query: 356 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEG 415
                P       A   P           P    A            PA  A     ++ 
Sbjct: 760 NPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKR 819

Query: 416 APPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
              +  P     +      P  A   P   +  + +++ A     A        P PP  
Sbjct: 820 KSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEP 879

Query: 476 GAPAPPADAPPAEPAPPAEAPPAESAPA 503
            A    A  P A  A P    PA     
Sbjct: 880 RARPGAAAPPKAAAAAPPAGAPAPRPRP 907

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 33/159 (20%), Positives = 42/159 (26%)

Query: 345 PEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
                PA  A       PAE    A  +PP               + PA  A +   +  
Sbjct: 760 NPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKR 819

Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
                 P         A PP   A       + +  +    A G  R +        P P
Sbjct: 820 KSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEP 879

Query: 465 PAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
            A    A P + A A P    PA    PA        P 
Sbjct: 880 RARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPP 918

Length = 1352

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 437 PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE-PAPPAEA 495
              G    PA      + AP  +  P P     PA P      P     PA  P P  + 
Sbjct: 376 NDGGVAPSPAGSPDVKKKAPEPD-LPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQP 434

Query: 496 PPAESAP 502
           P A SAP
Sbjct: 435 PVARSAP 441

Length = 620

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 29/81 (35%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 385 PPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAP 444
            P E     +  P + G       G   A GAP A A P A  A  A G PA A  A  P
Sbjct: 379 TPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA-LAAVP 437

Query: 445 PAEGAPRAEGAPPAEGAPAPP 465
            A  A  A  AP A   PA  
Sbjct: 438 DAAAAAAAPPAPAAAPQPAVR 458

Length = 598

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 22/84 (26%), Positives = 25/84 (29%)

Query: 369 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA 428
            + A     A P +  P     P    APA    P   A   P       A  P PA  A
Sbjct: 170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPA 229

Query: 429 PAAEGAPAPAEGAPAPPAEGAPRA 452
                AP P + A        P A
Sbjct: 230 TPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 21/85 (24%), Positives = 24/85 (28%)

Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
              P       A           PA     AP  +    A  AP+       A PA  AP
Sbjct: 169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAP 228

Query: 479 APPADAPPAEPAPPAEAPPAESAPA 503
           A P  A P        + PA    A
Sbjct: 229 ATPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 19/98 (19%), Positives = 24/98 (24%), Gaps = 3/98 (3%)

Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE-GAPAPPAEGAPRAEGAPPAEGAPA 463
           P  EG    + AP A                AP     P  P   A   + + P      
Sbjct: 317 PDTEGREGDDLAPTAVCTDAGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLP--DVRT 374

Query: 464 PPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
             A  + A  +   PA       A  A  A        
Sbjct: 375 GTAPTSLANVSHADPAVAQPTQAATLAGAAPKGATHLM 412

Length = 694

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 47/133 (35%), Positives = 50/133 (37%), Gaps = 13/133 (9%)

Query: 358 EGAPPAEGAPPAEGAPPAEG--APPAEGAPPAEGA-PPAEGAPAAEGAPA----PPAEGP 410
           EGA  A   P    A PAEG  A P  G   A+G+  PA    A    PA    P    P
Sbjct: 151 EGATNASLFPLGLAAFPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRP 210

Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA- 469
            P   A P   P P+                 A P  G       P AEG PAPP  G  
Sbjct: 211 TPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGT-----TPEAEGTPAPPTPGGG 265

Query: 470 PAPPAEGAPAPPA 482
            APPA   PAP A
Sbjct: 266 EAPPANATPAPEA 278

Length = 401

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 39.0 bits (92), Expect = 0.004
 Identities = 26/102 (25%), Positives = 29/102 (28%)

Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
           EGA     A  A  A  A  AP    A  A        +PAA    A         +G  
Sbjct: 78  EGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTG 137

Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAE 459
                   +   A   A A      A     AP   GA P E
Sbjct: 138 KGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEE 179

Length = 407

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 43/207 (20%), Positives = 58/207 (28%), Gaps = 7/207 (3%)

Query: 303 DDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPP-----A 357
           D+ +      V+A P  +L S  + T      ++    G P  E  A A  A       A
Sbjct: 275 DEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWA 334

Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAP-PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGA 416
               P    PP          P     P P         APA EG P       P  +  
Sbjct: 335 APVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYN 394

Query: 417 PPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEG 476
            P + P   +    A  A  PA+     PA   P  +                 A   + 
Sbjct: 395 EPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQS 454

Query: 477 APAPPADAPPAEPAP-PAEAPPAESAP 502
             AP +     +    PA   P    P
Sbjct: 455 TFAPQSTYQTEQTYQQPAAQEPLYQQP 481

Length = 1355

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 19/85 (22%), Positives = 22/85 (25%), Gaps = 2/85 (2%)

Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
           A     +       P   AP                  +A  A A  A  P P     P 
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFD--PR 398

Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAP 444
              PPA     +  AP     A AP
Sbjct: 399 PRGPPAPEPARSAEAPPLVAPAAAP 423

Length = 504

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 36/191 (18%), Positives = 74/191 (38%), Gaps = 5/191 (2%)

Query: 14  EAAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKKAA 73
           E AA S E   K+ +L++L  +   +   + +    + ++  +  + KK L     +   
Sbjct: 161 EEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYY--QLKE 218

Query: 74  EELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDRE 133
           +    E+    L+  ++ +ER    ++     ++EI    QE  +    L  +  E   E
Sbjct: 219 KLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEE 278

Query: 134 IMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKRE 193
              K  +  EL     +        +  +  K      + + K +E   +   K +KK +
Sbjct: 279 EKEKKLQEEELKLLAKEEEELKSELLKLERRK---VDDEEKLKESEKELKKLEKELKKEK 335

Query: 194 FSMEDAEKEKK 204
             +E+ EKE K
Sbjct: 336 EEIEELEKELK 346

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 24/93 (25%), Positives = 28/93 (30%), Gaps = 5/93 (5%)

Query: 411 PPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAP 470
           P A  A P + P   EGA  A  A   A  +  P     P        E AP  P +  P
Sbjct: 57  PAATQALPTQPP---EGAAEAVRAGDAAAPSLDPATVAPP--NTPVEPEPAPVEPPKPKP 111

Query: 471 APPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
               +  P P           P   P  E   A
Sbjct: 112 VEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAA 144

Length = 226

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score = 39.0 bits (92), Expect = 0.004
 Identities = 31/116 (26%), Positives = 35/116 (30%), Gaps = 22/116 (18%)

Query: 398 AAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRA----- 452
             EG     A      E   P  AP  A  A AA  A A      A  A+ +P       
Sbjct: 77  EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLAR 136

Query: 453 ---------EGAPPA--------EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
                    +G+ P         E A A  A  A A  A  A  P A A   E  P
Sbjct: 137 ELGVDLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERVP 192

Length = 411

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	503
KOG3977|consensus	221		100.0
PF00992	132	Troponin: Troponin; InterPro: IPR001978 The tropon	100.0
KOG3634|consensus	361		99.7
KOG1029|consensus	1118		95.79
PHA03247	3151	large tegument protein UL36; Provisional	95.75
KOG1029|consensus	1118		95.12
PHA03247	3151	large tegument protein UL36; Provisional	94.65
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	92.23
KOG1924|consensus	1102		90.23
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	88.96
KOG3054|consensus	299		88.58
KOG2891|consensus	445		86.55
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	85.73
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	85.62
TIGR02231	525	conserved hypothetical protein. This family consis	85.08
KOG1144|consensus	1064		84.31
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	84.25
KOG2412|consensus	591		82.38
KOG1924|consensus	1102		82.33
PRK04863	1486	mukB cell division protein MukB; Provisional	81.91

>KOG3977|consensus

Probab=100.00  E-value=2.8e-63  Score=465.48  Aligned_cols=204  Identities=42%  Similarity=0.613  Sum_probs=186.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh-ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy9560          19 SAEDEAKRLKLEELERKRAEVRRRMEEASGAR-RKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGE   97 (503)
Q Consensus        19 mad~ed~kRKqeErERKkAEvRKRlEEA~KkK-AKKgKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpP   97 (503)
                      |.|.++..|+++++++|++|||+|||+++..+ +||||+|++||++||+|||+||+++|+++++.+++||++||++|+.+
T Consensus         1 ~~dg~~~~rka~~re~kk~evrkrleeA~~~~~~KKgfltpeRKkkLrkLlm~kAaedLkqqq~~kEqErqr~LaeR~i~   80 (221)
T KOG3977|consen    1 EVDGDDAARKAQEREAKKAEVRKRLEEAGMPKKEKKGFLTPERKKKLRKLLMQKAAEDLKQQQELKEQERQRYLAERTIP   80 (221)
T ss_pred             CCccchhhhhccchhHHHHHHHHHHHHhcccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            46778899999999999999999999999766 89999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCCH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCCCCCccccccccHHHHHH-H--
Q psy9560          98 PKDTDDMAE-DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAK-L--  173 (503)
Q Consensus        98 PLnIDGLSe-dELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKFKKPaLKKVRkSAnm~a~-L--  173 (503)
                      +.|+++|+. ..|++||++||.+|+.||+|||||+++|.+++.|||+|||+||||||||+||+|||||+|+|+|.. |  
T Consensus        81 lp~~d~l~d~g~Lq~ly~~l~arv~~leEEkYDi~~~v~qt~~EIndLtikvnDLRGKFvkPtLkkVsks~~kf~ka~~~  160 (221)
T KOG3977|consen   81 LPDVDSLDDRGLLQDLYRELHARVDALEEEKYDIEAKVTQTETEINDLTIKVNDLRGKFVKPTLKKVSKSADKFLKALLG  160 (221)
T ss_pred             CCCCCcccchHHHHHHHHHHHHHHHHHHHhhcchhheeehhhhhHHHHHHHHHHhcccccCccHHHHHhhhHHHHHHhhc
Confidence            999998876 569999999999999999999999999999999999999999999999999999999999976643 3  


Q ss_pred             Hhhhhccchhhhcccccccccchhh--hhhccCccccccchhhccCCCCCC
Q psy9560         174 QKKAAEFNFRSQLKAVKKREFSMED--AEKEKKPEWVKEPESKKKRIPIPE  222 (503)
Q Consensus       174 ~KhkvsmDfRANLKqVKKEe~~leE--eekeeVgDWRKNiE~K~~~e~~~~  222 (503)
                      .||+++||||+|||+|||+++..+.  +++.+||||||||+..+++|....
T Consensus       161 ~k~~~k~DlRanLK~VKKed~~~e~~~kkk~ek~dW~K~~~~~~~mE~~~k  211 (221)
T KOG3977|consen  161 SKHKVKMDLRANLKQVKKEDTEKERPNKKKREKGDWRKNIEPESGMEGRKK  211 (221)
T ss_pred             cchhhhHHHHHHHHHhhhhhHHHhhhhhhcccchhhhhccCccccCccchh
Confidence            3789999999999999999775433  345689999999999888876554

>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction

Probab=100.00  E-value=6e-41  Score=295.70  Aligned_cols=129  Identities=42%  Similarity=0.640  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhh
Q psy9560          61 KKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFE  140 (503)
Q Consensus        61 KkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyE  140 (503)
                      |++||+|||++|..+|..++++++++|.+||++||+ +++|+|+|.++|+++|++||++|++||++|||+|++|.+++||
T Consensus         1 K~~lK~L~~~kA~~el~~e~~~keeek~~~L~eri~-~l~~~g~~~~eL~~~~k~lh~ri~~leeEryd~E~kv~k~~~E   79 (132)
T PF00992_consen    1 KRMLKDLLLLKAKIELHFEQRKKEEEKRRYLAERIP-PLKLDGLSRAELQELCKELHERIDKLEEERYDLEEKVAKQDYE   79 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCTS-S--GTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            679999999999999999999999999999999996 6689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCccccccccHH-HHHHH--Hhhhhccchhhhccccc
Q psy9560         141 ITELGKQVNDLRGKFVRPILKKVSKYEN-KFAKL--QKKAAEFNFRSQLKAVK  190 (503)
Q Consensus       141 InELniKVnDLRGKFKKPaLKKVRkSAn-m~a~L--~KhkvsmDfRANLKqVK  190 (503)
                      |++||++|+|++|||+||+||+|++|++ |+.+|  .+|.++||||+|||+||
T Consensus        80 i~elk~kv~d~rgkfkkp~lkkvkk~~~~~~~~~l~~k~~~~~~lr~~lK~vk  132 (132)
T PF00992_consen   80 IEELKKKVNDLRGKFKKPTLKKVKKSADAMRRKLLGIKHKVSMDLRANLKEVK  132 (132)
T ss_dssp             HHHHCCCCCCCCCSHCCHHHHHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHcccccchHHHHHHHHHHHHHHhhhCcccccHHHHHHHhhccC
Confidence            9999999999999999999999999995 34444  38999999999999996

Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....

>KOG3634|consensus

Probab=99.70  E-value=1.1e-16  Score=160.73  Aligned_cols=87  Identities=20%  Similarity=0.360  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHH
Q psy9560          67 LLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGK  146 (503)
Q Consensus        67 LLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELni  146 (503)
                      +.++.|+.+++..++|.+.+|+++|.--|..+++||+|..++|++++|+||+|||+||.+||||+.++++|+|||++||.
T Consensus       193 gn~~qak~e~~mtKeQqEdakk~~l~aiRkk~~~~~~~~e~~LkeKiKELhqrI~kLE~EKyDLekR~eRQeYDlkeL~e  272 (361)
T KOG3634|consen  193 GNIVQAKQEMGMTKEQQEDAKKKFLLAIRKKPLNISELPENDLKEKIKELHQRICKLETEKYDLEKRHERQEYDLKELNE  272 (361)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhccHHHHHH
Confidence            34455667777667776655555554444489999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhC
Q psy9560         147 QVNDLRG  153 (503)
Q Consensus       147 KVnDLRG  153 (503)
                      |+++...
T Consensus       273 Rqrq~~r  279 (361)
T KOG3634|consen  273 RQRQVQR  279 (361)
T ss_pred             HHHHHHH
Confidence            9888643

>KOG1029|consensus

Probab=95.79  E-value=0.058  Score=61.26  Aligned_cols=45  Identities=16%  Similarity=0.237  Sum_probs=24.9

Q ss_pred             HHHHHHHHHhhhhhhHHHHHhhhhh--------------hHHHHHHHHHHhhCCCCCCc
Q psy9560         115 EYWQRIYNLEAIKYELDREIMLKDF--------------EITELGKQVNDLRGKFVRPI  159 (503)
Q Consensus       115 ELHdRIdkLEEEKYDLE~KVkKQDy--------------EInELniKVnDLRGKFKKPa  159 (503)
                      -|..+|.+|++--.|+..++..++.              ||..|..||.+++-|..+=+
T Consensus       448 tLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~  506 (1118)
T KOG1029|consen  448 TLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLA  506 (1118)
T ss_pred             HHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3444445555555555555555444              34556667777777665543

>PHA03247 large tegument protein UL36; Provisional

Probab=95.75  E-value=1.4  Score=55.78  Aligned_cols=9  Identities=67%  Similarity=0.763  Sum_probs=3.7

Q ss_pred             hhhcCchhh
Q psy9560         312 AVSATPQPL  320 (503)
Q Consensus       312 ~~~~~~~~~  320 (503)
                      .++++|-+.
T Consensus      2715 ~~pa~P~pp 2723 (3151)
T PHA03247       2715 LVSATPLPP 2723 (3151)
T ss_pred             CCCCCCCCC
Confidence            344444433

>KOG1029|consensus

Probab=95.12  E-value=0.26  Score=56.36  Aligned_cols=16  Identities=6%  Similarity=-0.023  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy9560         106 EDEIGDLCQEYWQRIY  121 (503)
Q Consensus       106 edELQEkCKELHdRId  121 (503)
                      ...|+.+.++|..+|+
T Consensus       446 letLn~k~qqls~kl~  461 (1118)
T KOG1029|consen  446 LETLNFKLQQLSGKLQ  461 (1118)
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            3445555555555554

>PHA03247 large tegument protein UL36; Provisional

Probab=94.65  E-value=9.3  Score=49.09  Aligned_cols=9  Identities=22%  Similarity=0.686  Sum_probs=4.7

Q ss_pred             cccccchhh
Q psy9560         206 EWVKEPESK  214 (503)
Q Consensus       206 DWRKNiE~K  214 (503)
                      -|-+-.|+-
T Consensus      2535 ~w~~glEe~ 2543 (3151)
T PHA03247       2535 TWIRGLEEL 2543 (3151)
T ss_pred             hhhhhhhhh
Confidence            465555553

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=92.23  E-value=22  Score=40.93  Aligned_cols=64  Identities=16%  Similarity=0.178  Sum_probs=34.3

Q ss_pred             hhhhhHHhhccccCCCCccHHHHHH-------------------HHHHhhhc-CchhhHHHHHHHHHhhhhccccccCCC
Q psy9560         283 PEELWLYLKDTVSASNPVSIDDLVE-------------------KLMSAVSA-TPQPLLKSVVKDTLRRQASHEETEGGE  342 (503)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (503)
                      ..+.|--|...|.-.|-.++--|+.                   -|...++. ----+|.++|.+.|..+..-+-+-|+.
T Consensus       512 lr~~W~~Il~~V~~~~r~~~~~~l~~a~v~~~~g~~L~L~f~t~~la~~f~~~~~a~vl~~al~e~lG~~~~V~a~vg~~  591 (824)
T PRK07764        512 LRERWPEILAAVPKRSRKTWAILLPEATVLGVRGDTLVLGFSTGGLARRFASPGNAEVLVTALAEELGGDWQVEAVVGPA  591 (824)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHhcccceeecccCCEEEEecCCHHHHHHHhcccchHHHHHHHHHHhCCceEEEEEeCCC
Confidence            4588999988888777311111111                   12222222 122356667777776666666666655


Q ss_pred             CCCC
Q psy9560         343 PKPE  346 (503)
Q Consensus       343 ~~~~  346 (503)
                      +...
T Consensus       592 ~~~~  595 (824)
T PRK07764        592 PGAA  595 (824)
T ss_pred             cccc
Confidence            5443

>KOG1924|consensus

Probab=90.23  E-value=1.5  Score=50.53  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHh
Q psy9560         107 DEIGDLCQEYWQRIYNLEAIKYELDREIM  135 (503)
Q Consensus       107 dELQEkCKELHdRIdkLEEEKYDLE~KVk  135 (503)
                      .+|+=.|   |+-|..|...-|||.+++.
T Consensus       302 ~~l~vac---mq~INal~t~p~dldfRlh  327 (1102)
T KOG1924|consen  302 QQLQVAC---MQFINALVTSPSDLDFRLH  327 (1102)
T ss_pred             HHHHHHH---HHHHHHhcCCHHHhhHHHH
Confidence            3444444   3467777777777776664

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=88.96  E-value=7.7  Score=43.81  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=23.1

Q ss_pred             hhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560         128 YELDREIMLKDFEITELGKQVNDLRG  153 (503)
Q Consensus       128 YDLE~KVkKQDyEInELniKVnDLRG  153 (503)
                      =.++..+.++|.||.||++||.+|.-
T Consensus       632 ei~~~~~~~~d~ei~~lk~ki~~~~a  657 (697)
T PF09726_consen  632 EIAQGQLRKKDKEIEELKAKIAQLLA  657 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36677899999999999999999976

; GO: 0016021 integral to membrane

>KOG3054|consensus

Probab=88.58  E-value=1.4  Score=45.06  Aligned_cols=11  Identities=55%  Similarity=0.776  Sum_probs=8.0

Q ss_pred             HHHHHhhCCCC
Q psy9560         146 KQVNDLRGKFV  156 (503)
Q Consensus       146 iKVnDLRGKFK  156 (503)
                      .=|.|=||||.
T Consensus       245 tGVmDDRGKfI  255 (299)
T KOG3054|consen  245 TGVMDDRGKFI  255 (299)
T ss_pred             eeeecCCCceE
Confidence            34677799995

>KOG2891|consensus

Probab=86.55  E-value=11  Score=39.55  Aligned_cols=10  Identities=20%  Similarity=0.132  Sum_probs=5.3

Q ss_pred             HHHHHHHHHH
Q psy9560         112 LCQEYWQRIY  121 (503)
Q Consensus       112 kCKELHdRId  121 (503)
                      ++|+|.++|.
T Consensus       408 kikeleek~~  417 (445)
T KOG2891|consen  408 KIKELEEKIK  417 (445)
T ss_pred             HHHHHHHHHH
Confidence            3456655553

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=85.73  E-value=26  Score=40.44  Aligned_cols=59  Identities=7%  Similarity=-0.085  Sum_probs=32.2

Q ss_pred             HhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHH
Q psy9560          90 VIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVND  150 (503)
Q Consensus        90 iLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnD  150 (503)
                      .|.-|| ..+.+..|+.++|.++++++..+.. +.-+.-.|.+.+.....++.++..-+..
T Consensus       166 TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EG-v~id~eal~lLa~~sgGdlR~Al~eLEK  224 (824)
T PRK07764        166 TIRSRT-HHYPFRLVPPEVMRGYLERICAQEG-VPVEPGVLPLVIRAGGGSVRDSLSVLDQ  224 (824)
T ss_pred             HHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            356688 4678888888888877776554422 2112222334444444445444433333

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=85.62  E-value=46  Score=38.27  Aligned_cols=25  Identities=16%  Similarity=0.190  Sum_probs=18.1

Q ss_pred             hhhhcCCCCCCCCCCHHHHHHHHHHH
Q psy9560          91 IDERCGEPKDTDDMAEDEIGDLCQEY  116 (503)
Q Consensus        91 LAERcpPPLnIDGLSedELQEkCKEL  116 (503)
                      |.-|| ..+.+..++.+++.+.++.+
T Consensus       171 IrSRC-q~f~f~~ls~eei~~~L~~I  195 (700)
T PRK12323        171 VLSRC-LQFNLKQMPPGHIVSHLDAI  195 (700)
T ss_pred             HHHHH-HhcccCCCChHHHHHHHHHH
Confidence            44589 47789999988877666544

>TIGR02231 conserved hypothetical protein

Probab=85.08  E-value=14  Score=39.27  Aligned_cols=53  Identities=19%  Similarity=0.090  Sum_probs=49.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCC
Q psy9560         102 DDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGK  154 (503)
Q Consensus       102 DGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGK  154 (503)
                      ...+..+|.++..-+.+++..|..++++++.+++..+.+|..|+.+++.|.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~  174 (525)
T TIGR02231       122 NEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLTG  174 (525)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            35578999999999999999999999999999999999999999999999883

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>KOG1144|consensus

Probab=84.31  E-value=2.5  Score=48.92  Aligned_cols=28  Identities=32%  Similarity=0.374  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q psy9560          23 EAKRLKLEELERKRAEVRRRMEEASGAR   50 (503)
Q Consensus        23 ed~kRKqeErERKkAEvRKRlEEA~KkK   50 (503)
                      |.++|-++|+.|+.+|.|+|++|.++.+
T Consensus       231 E~qkreeEE~~r~eeEEer~~ee~E~~~  258 (1064)
T KOG1144|consen  231 ERQKREEEERLRREEEEERRREEEEAQE  258 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777888888877777766655443

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=84.25  E-value=22  Score=34.53  Aligned_cols=60  Identities=18%  Similarity=0.258  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhh-HHHHHhhhhhhHHHHHHHHHHhhCCCCCCccccccccHHHHHHH
Q psy9560         107 DEIGDLCQEYWQRIYNLEAIKYE-LDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKL  173 (503)
Q Consensus       107 dELQEkCKELHdRIdkLEEEKYD-LE~KVkKQDyEInELniKVnDLRGKFKKPaLKKVRkSAnm~a~L  173 (503)
                      +.|.+.|..||..|..--.++-+ |+..       ...|..+|++|+..|..=..-|+.+-.+++.+|
T Consensus        95 ~~L~~ri~~L~~~i~ee~~~r~~~ie~~-------~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl  155 (247)
T PF06705_consen   95 DSLNDRIEALEEEIQEEKEERPQDIEEL-------NQELVRELNELQEAFENERNEREEREENILKRL  155 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777777777777665555443 2222       233444555555555554445555555555555

>KOG2412|consensus

Probab=82.38  E-value=9.7  Score=42.52  Aligned_cols=57  Identities=21%  Similarity=0.353  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCCCCCccccccccHH
Q psy9560         108 EIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYEN  168 (503)
Q Consensus       108 ELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKFKKPaLKKVRkSAn  168 (503)
                      ++....+-.|..++.+-.-+-|++.-+.+.+-++..+++.   |+. -.-|.|--++++..
T Consensus       298 ~~~~ds~m~w~~~d~i~q~k~d~v~pi~~kd~~lk~~~~~---~kr-~in~~~~qis~~~~  354 (591)
T KOG2412|consen  298 SSASDSQMFWNSQDAIAQSKLDLVNPILKKDEELKNYNQS---LKR-AINPPFSQISKSNG  354 (591)
T ss_pred             CchhHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHh-hcCCChhhhhhccH
Confidence            3556777788888888889999999988887766666554   444 35677777777773

>KOG1924|consensus

Probab=82.33  E-value=14  Score=43.27  Aligned_cols=9  Identities=44%  Similarity=0.693  Sum_probs=4.0

Q ss_pred             HHHHHHHHH
Q psy9560         302 IDDLVEKLM  310 (503)
Q Consensus       302 ~~~~~~~~~  310 (503)
                      ||++|++-|
T Consensus       460 iD~~vdkak  468 (1102)
T KOG1924|consen  460 IDKMVDKAK  468 (1102)
T ss_pred             HHHHHHHHH
Confidence            344444444

>PRK04863 mukB cell division protein MukB; Provisional

Probab=81.91  E-value=36  Score=41.83  Aligned_cols=62  Identities=11%  Similarity=0.157  Sum_probs=54.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHh---hCCCCCCc
Q psy9560          98 PKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDL---RGKFVRPI  159 (503)
Q Consensus        98 PLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDL---RGKFKKPa  159 (503)
                      ++.+++|+.++|+.....|.+++..+..+.-+++.++...+..++.|+...+.+   .|+.-+..
T Consensus       429 ~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~  493 (1486)
T PRK04863        429 LCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSE  493 (1486)
T ss_pred             HhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHH
Confidence            456788999999999999999999999999999999999999999999998774   66544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	503
1j1e_C	180	Crystal Structure Of The 52kda Domain Of Human Card		2e-04
1j1d_B	106	Crystal Structure Of The 46kda Domain Of Human Card		5e-04

>pdb|1J1E|C Chain C, Crystal Structure Of The 52kda Domain Of Human Cardiac Troponin In The Ca2+ Saturated Form Length = 180

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 108 EIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYE 167
           E+ DL ++   R+  ++  +Y+++ ++     EI +L +++ DLRGKF RP L++V    
Sbjct: 62  ELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRISA 121
Query: 168 NKF--AKLQKKAAE-FNFRSQLKAVKKREFSMED 198
           +    A L  +A E  + R+ LK VKK +   E+
Sbjct: 122 DAMMQALLGARAKESLDLRAHLKQVKKEDTEKEN 155

>pdb|1J1D|B Chain B, Crystal Structure Of The 46kda Domain Of Human Cardiac Troponin In The Ca2+ Saturated Form Length = 106

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 102 DDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVND 150
           D + ED++ +  +E WQ IYNLEA K++L  +   + +EI  L  ++ND
Sbjct: 40  DHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIND 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	503
1j1e_C	180	Troponin I, TNI; THIN filament, muscle regulation,	2e-44
1ytz_I	182	Troponin I; muscle, THIN filament, actin binding,	1e-41
1j1d_C	133	Troponin I, TNI; THIN filament, muscle regulation,	4e-35
1ytz_T	107	Troponin T; muscle, THIN filament, actin binding,	4e-17
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	5e-13
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	7e-12
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-11
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-08
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-06
1j1d_B	106	Troponin T, TNT; THIN filament, muscle regulation,	2e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	4e-07
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	6e-06
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	3e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	5e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	7e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	3e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	6e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-04
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	6e-07
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	1e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	7e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	7e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	9e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	8e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	5e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	5e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	7e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	9e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-06
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-06
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-04
1eys_C	382	Photosynthetic reaction center; membrane protein c	1e-04
1eys_C	382	Photosynthetic reaction center; membrane protein c	4e-04
1eys_C	382	Photosynthetic reaction center; membrane protein c	6e-04
1eys_C	382	Photosynthetic reaction center; membrane protein c	9e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	2e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	4e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	6e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	6e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	8e-04
2zkq_b	295	40S ribosomal protein SA; protein-RNA complex, 40S	2e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	2e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	2e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	3e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	7e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	2e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	5e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	6e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	6e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	7e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	7e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	8e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	8e-04
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	8e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	8e-04

>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2 Length = 180

 Score =  153 bits (389), Expect = 2e-44
 Identities = 45/172 (26%), Positives = 87/172 (50%), Gaps = 7/172 (4%)

Query: 47  SGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAE 106
               +KK  ++  RK +L+ LL + A +EL+RE E R  E+ R +  R  +P +   +  
Sbjct: 2   EPHAKKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRA-QPLELAGLGF 60

Query: 107 DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKY 166
            E+ DL ++   R+  ++  +Y+++ ++     EI +L +++ DLRGKF RP L++V   
Sbjct: 61  AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRIS 120

Query: 167 ENKFAKL---QKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKK 215
            +   +     +     + R+ LK VKK +    + E  +  +W K  ++  
Sbjct: 121 ADAMMQALLGARAKESLDLRAHLKQVKKED---TEKENREVGDWRKNIDALS 169

>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A Length = 182

 Score =  146 bits (369), Expect = 1e-41
 Identities = 38/169 (22%), Positives = 81/169 (47%), Gaps = 6/169 (3%)

Query: 50  RRKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEI 109
             KK      R++ L+  + + A  E+++E   + +E++  + E          M E + 
Sbjct: 3   EEKKRRAATARRQHLKSAMLQLAVTEIEKEAAAKEVEKQNYLAEHSPPLSLPGSMQELQ- 61

Query: 110 GDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENK 169
            +L ++   +I +++  +Y+ + ++   + E+ +L +++ DLRGKF RP L++V    + 
Sbjct: 62  -ELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLRGKFKRPPLRRVRMSADA 120

Query: 170 FAKL---QKKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKK 215
             +     K     + R+ LK VKK E + ++ +     +W K  E K 
Sbjct: 121 MLRALLGSKHKVNMDLRANLKQVKK-EDTEKEKDLRDVGDWRKNIEEKS 168

>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2 Length = 133

 Score =  126 bits (319), Expect = 4e-35
 Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 47  SGARRKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAE 106
               +KK  ++  RK +L+ LL + A +EL+RE E R  E+ R +  R  +P +   +  
Sbjct: 2   EPHAKKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRA-QPLELAGLGF 60

Query: 107 DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSK 165
            E+ DL ++   R+  ++  +Y+++ ++     EI +L +++ DLRGKF RP L++V  
Sbjct: 61  AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRI 119

>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1 Length = 107

 Score = 76.1 bits (187), Expect = 4e-17
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 67  LLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAI 126
            L K   +  K++  R    +K+V+ ER  +P + D + ED++ D  +E W  +Y L+  
Sbjct: 8   YLAKADQKRGKKQTARE--TKKKVLAERR-KPLNIDHLNEDKLRDKAKELWDWLYQLQTE 64

Query: 127 KYELDREIMLKDFEITELGKQVNDLRGKFVRPILKK 162
           KY+   +I  K +EI  L  +++  +    +   K 
Sbjct: 65  KYDFAEQIKRKKYEIVTLRNRIDQAQKHSKKAGAKG 100

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 70.8 bits (172), Expect = 5e-13
 Identities = 29/141 (20%), Positives = 34/141 (24%), Gaps = 2/141 (1%)

Query: 362 PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEA 421
             E A P       E           E     EG  A E            +E A PA  
Sbjct: 21  GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASN 80

Query: 422 PPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
                    A  A  P E A    AE    +  A P           A     E  PA  
Sbjct: 81  EAATTETAEAASAAKPEEKASEVVAE--TPSAEAKPKSDKETEAKPEATNQGDESKPAAE 138

Query: 482 ADAPPAEPAPPAEAPPAESAP 502
           A+    E  P       ++  
Sbjct: 139 ANKTEKEVQPDVPKNTEKTLK 159

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 67.3 bits (163), Expect = 7e-12
 Identities = 26/127 (20%), Positives = 31/127 (24%), Gaps = 4/127 (3%)

Query: 381 AEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEG 440
            E     E +       + E   +                    AEG   A    +PA  
Sbjct: 21  GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASN 80

Query: 441 ----APAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAP 496
                    A  A + E       A  P AE  P    E    P A     E  P AEA 
Sbjct: 81  EAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEAN 140

Query: 497 PAESAPA 503
             E    
Sbjct: 141 KTEKEVQ 147

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 65.4 bits (158), Expect = 2e-11
 Identities = 24/117 (20%), Positives = 30/117 (25%), Gaps = 3/117 (2%)

Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
                     P   GA      G          EA    EG  A E     AEG      
Sbjct: 17  LYFQGEETAVPENSGANTELVSGESEH---STNEADKQNEGEHARENKLEKAEGVATASE 73

Query: 447 EGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
             +P +  A   E A A  A       +E     P+     +     EA P  +   
Sbjct: 74  TASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQG 130

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 56.9 bits (136), Expect = 1e-08
 Identities = 28/198 (14%), Positives = 42/198 (21%), Gaps = 4/198 (2%)

Query: 303 DDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEG--- 359
              +E L      T  P       + +  ++ H   E  +      A  +    AEG   
Sbjct: 11  HHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVAT 70

Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
           A         E A        +   P  + +      P+AE  P    E     E     
Sbjct: 71  ASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQG 130

Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
           +   PA  A   E    P               +     E     P              
Sbjct: 131 DESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGA-REDDAINRGSV 189

Query: 480 PPADAPPAEPAPPAEAPP 497
             A            +  
Sbjct: 190 VLASRRTGHLVNEKASKE 207

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 52.3 bits (124), Expect = 3e-07
 Identities = 36/233 (15%), Positives = 54/233 (23%), Gaps = 37/233 (15%)

Query: 197 EDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEV 256
           +      + E    PE+      +   E E  +           E     EGE    E  
Sbjct: 13  QLENLYFQGEETAVPENSGANTELVSGESEHST----------NEADKQNEGEHAR-ENK 61

Query: 257 PPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSAT 316
               E          P +  +  T   E                          +A +A 
Sbjct: 62  LEKAEGVATASETASPASNEAATTETAE--------------------------AASAAK 95

Query: 317 PQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAE 376
           P+     VV +T   +A  +  +  E KPE     D + PA  A   E     +     E
Sbjct: 96  PEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTE 155

Query: 377 GAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAP 429
                +           +  P A    A        A           A    
Sbjct: 156 KTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEA 208

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 51.9 bits (123), Expect = 4e-07
 Identities = 25/265 (9%), Positives = 35/265 (13%), Gaps = 57/265 (21%)

Query: 233 ASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKD 292
                  +      E    P            E           +      E        
Sbjct: 8   HGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHAREN------- 60

Query: 293 TVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPAD 352
                                                      E+ EG     E  +PA 
Sbjct: 61  -----------------------------------------KLEKAEGVATASETASPAS 79

Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPP 412
                     A  A   E       A         +     E  P A             
Sbjct: 80  NEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEAT---------NQG 130

Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAP 472
            E  P AEA    +               P      +                       
Sbjct: 131 DESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVV 190

Query: 473 PAEGAPAPPADAPPAEPAPPAEAPP 497
            A        +   ++ A       
Sbjct: 191 LASRRTGHLVNEKASKEAKVQALSN 215

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 50.3 bits (119), Expect = 1e-06
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 1/99 (1%)

Query: 187 KAVKKREFSMEDAEKEKKPEWVKEPESKKKRIPIPEPEPEPESATDASDVEDGKETPLPP 246
               + E S  +A+K+ + E  +E + +K        E    ++ +A+  E   E     
Sbjct: 36  LVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTE-TAEAASAA 94

Query: 247 EGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEE 285
           + E+   E V   P  E +P  ++     P       E 
Sbjct: 95  KPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDES 133

>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B Length = 106

 Score = 62.7 bits (152), Expect = 2e-12
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 68  LRKKAAEELKREQERRALERKR-VIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAI 126
           ++K+A  E K  + +   E+K+ ++ ER  +    D + ED++ +  +E WQ IYNLEA 
Sbjct: 6   IQKQAQTERKSGKRQTEREKKKKILAERR-KVLAIDHLNEDQLREKAKELWQTIYNLEAE 64

Query: 127 KYELDREIMLKDFEITELGKQVNDLR 152
           K++L  +   + +EI  L  ++ND +
Sbjct: 65  KFDLQEKFKQQKYEINVLRNRINDNQ 90

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 68.3 bits (166), Expect = 3e-12
 Identities = 25/154 (16%), Positives = 33/154 (21%), Gaps = 2/154 (1%)

Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
               G        PA+  PP    P A G    +   P +GA P+ G             
Sbjct: 13  QLQYGQNATPLQQPAQFMPP--QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG 468
                      +                P             +   A PA G P+     
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

Query: 469 APAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
              P  +  P       P         PP    P
Sbjct: 131 NMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIP 164

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 66.8 bits (162), Expect = 9e-12
 Identities = 22/143 (15%), Positives = 27/143 (18%), Gaps = 6/143 (4%)

Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
           A    G        PA+  PP     PA                 P          A   
Sbjct: 12  AQLQYGQNATPLQQPAQFMPP---QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQ 68

Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPA 479
                 +   +             P A   P     P   G P    +   A PA G P+
Sbjct: 69  LHQQIDQATTSMNDMHLHNVPLVDPNAYMQP---QVPVQMGTPLQQQQQPMAAPAYGQPS 125

Query: 480 PPADAPPAEPAPPAEAPPAESAP 502
                                 P
Sbjct: 126 AAMGQNMRPMNQLYPIDLLTELP 148

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 64.8 bits (157), Expect = 4e-11
 Identities = 25/144 (17%), Positives = 33/144 (22%), Gaps = 6/144 (4%)

Query: 360 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPA 419
           +   +   P       + A P     PA+  PP      A    +    G PP    P  
Sbjct: 2   SHHKKRVYPQAQLQYGQNATP--LQQPAQFMPPQ---DPAAAGMSYGQMGMPPQGAVPSM 56

Query: 420 EAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPA-EGAPAPPAEGAP 478
                   A                           P A   P  P   G P    +   
Sbjct: 57  GQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPM 116

Query: 479 APPADAPPAEPAPPAEAPPAESAP 502
           A PA   P+        P  +  P
Sbjct: 117 AAPAYGQPSAAMGQNMRPMNQLYP 140

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 62.9 bits (152), Expect = 1e-10
 Identities = 28/168 (16%), Positives = 42/168 (25%), Gaps = 6/168 (3%)

Query: 330 RRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 389
           +R     + + G+     + PA   PP    P A G    +   P +GA P+ G      
Sbjct: 6   KRVYPQAQLQYGQNATPLQQPAQFMPP--QDPAAAGMSYGQMGMPPQGAVPSMGQQQ--F 61

Query: 390 APPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGA 449
             PA+     +   A  +         P     P A   P               P    
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPL--VDPNAYMQPQVPVQMGTPLQQQQQPMAAP 119

Query: 450 PRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
              + +        P  +  P       P P  D     P        
Sbjct: 120 AYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPER 167

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 62.2 bits (150), Expect = 2e-10
 Identities = 17/132 (12%), Positives = 28/132 (21%), Gaps = 1/132 (0%)

Query: 372 APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAA 431
           +   +   P       + A P +          P A G    +   P +   P+ G    
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 432 EGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAP 491
              PA  +             +          P A   P  P +          P     
Sbjct: 62  -LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPA 120

Query: 492 PAEAPPAESAPA 503
             +   A     
Sbjct: 121 YGQPSAAMGQNM 132

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 58.3 bits (140), Expect = 4e-09
 Identities = 25/150 (16%), Positives = 32/150 (21%), Gaps = 2/150 (1%)

Query: 345 PEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPA 404
           P    P      A  +    G PP    P          A         +   +      
Sbjct: 26  PAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHL 85

Query: 405 PPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAP 464
                  P     P    P   G P  +     A  A   P+    +             
Sbjct: 86  HNVPLVDPNAYMQPQ--VPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDL 143

Query: 465 PAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
             E  P       P PP   PP     P+E
Sbjct: 144 LTELPPPITDLTLPPPPLVIPPERMLVPSE 173

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.6 bits (120), Expect = 9e-07
 Identities = 22/154 (14%), Positives = 28/154 (18%)

Query: 350 PADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEG 409
              G PP    P          A         +                   A   P   
Sbjct: 43  GQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVP 102

Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGA 469
                     + P  A        A                  E  PP      PP    
Sbjct: 103 VQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLV 162

Query: 470 PAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
             P     P+  ++A P        A P  S+  
Sbjct: 163 IPPERMLVPSELSNASPDYIRSTLNAVPKNSSLL 196

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 57.8 bits (139), Expect = 3e-09
 Identities = 18/101 (17%), Positives = 23/101 (22%)

Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP 462
                  P  +    P+ +   A     A   P      PAPP   AP A   P      
Sbjct: 9   HHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGD 68

Query: 463 APPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
           +        P   G  +            P     A  A  
Sbjct: 69  SVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAG 109

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 57.1 bits (137), Expect = 6e-09
 Identities = 24/121 (19%), Positives = 30/121 (24%), Gaps = 3/121 (2%)

Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
           G+        +   P       P A     A     A  PP     PA    P P   A 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPA---PPPPPAPAA 58

Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAP 502
             P +              P  P   + AP       P  +AP + P     A P     
Sbjct: 59  GNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHH 118

Query: 503 A 503
            
Sbjct: 119 P 119

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 57.1 bits (137), Expect = 7e-09
 Identities = 29/133 (21%), Positives = 34/133 (25%), Gaps = 4/133 (3%)

Query: 359 GAPPAEGAPPAEGAPPAEGA-PPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
           G+        +   P       P+     A     A   P        P   P PA G P
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61

Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
           P      +       G   P   + AP            P   A APPA G   P     
Sbjct: 62  PDTVTGDSVLQRILRGPTGPGTTSLAP---AVRYGRQPGPEAPASAPPAAGRAVPGLYHH 118

Query: 478 PAPPADAPPAEPA 490
           P P  D    E  
Sbjct: 119 PVPEPDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 24/115 (20%), Positives = 26/115 (22%), Gaps = 2/115 (1%)

Query: 343 PKPEGEAPADGAPPAEGAPPAEGAPPA--EGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
                  P+     A     A   PP       P     PA G PP      +       
Sbjct: 17  RGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILR 76

Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGA 455
           G   P      PA        P     AP A G   P       P     R E  
Sbjct: 77  GPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEV 131

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 32/213 (15%), Positives = 64/213 (30%), Gaps = 57/213 (26%)

Query: 29  LEEL--ERKRAEVRRRMEEASGARRKKGFMTPERKKKLR-----LLLRKKAAEELKREQE 81
           L  +  +  +++V   + +      K   +  ++ K+       + L  K   E +    
Sbjct: 392 LSLIWFDVIKSDVMVVVNKL----HKYS-LVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 82  RRALERKRVIDERCGE--PKDTDDMAEDEIGDLCQEYW-QRI-YNLEAI----KYELDRE 133
           R  ++   +      +       D            Y+   I ++L+ I    +  L R 
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQ-----------YFYSHIGHHLKNIEHPERMTLFRM 495

Query: 134 IMLKDFE-----ITELGKQVN----------DLRGKFVRPILKKVSKYENKFAKLQK--- 175
           + L DF      I       N           L+  +   I     KYE     +     
Sbjct: 496 VFL-DFRFLEQKIRHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNAILDFLP 553

Query: 176 KAAEFNFRS------QLKAVKKREFSMEDAEKE 202
           K  E    S      ++  + + E   E+A K+
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 9e-07
 Identities = 53/411 (12%), Positives = 103/411 (25%), Gaps = 152/411 (36%)

Query: 15  AAAASAEDEAKRLKLEELERKRAEVRRRMEEASGARRKKGFMT-PERKKKLRLLLRK--- 70
            +    E     +       +R  +             K  ++  +   KLR  L +   
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYN-----DNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 71  -------------K---AAEELKREQERRALERKRV--ID-ERCGEPKDTDDMAEDEIGD 111
                        K   A +     + +  ++ K +  ++ + C  P+   +M +  +  
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-IFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 112 LCQEYWQR-------IYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVS 164
           +   +  R          + +I+ EL R +  K +E   L              +L  V 
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--------------VLLNVQ 254

Query: 165 KYENKFAKLQKKAAE-FNFRSQ-------------LKAVKKREFSMEDAEKEKKPEWVKE 210
                      KA   FN   +             L A      S++          +  
Sbjct: 255 ---------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-----LTP 300

Query: 211 PESKK---KRIPIPEPEPEPESATD---------ASDVEDGKETP--------------- 243
            E K    K +    P+  P              A  + DG  T                
Sbjct: 301 DEVKSLLLKYLDCR-PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 244 ------LPPEGEQP--------PVEEVPPPPEPEPEPPVEEIPPTPPSPVTPNPEELWLY 289
                 L P   +         P      P        +  +              +W  
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTI------LLSL--------------IWFD 398

Query: 290 LKDTVSASNPVSIDDLVEKLM--SAVSATPQPLLKSV--VKDTLRRQASHE 336
           +  +        +  +V KL   S V   P+    S+  +   L+ +  +E
Sbjct: 399 VIKSD-------VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 23/140 (16%), Positives = 25/140 (17%), Gaps = 16/140 (11%)

Query: 369 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGA 428
            EG     G        P       +G    E       E     E         PA  A
Sbjct: 62  PEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEA 121

Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPP------------AEGAPAPPAEG 476
            A       A     P      R +G                         G   P    
Sbjct: 122 EAGPNRRVIA----MPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAA 177

Query: 477 APAPPADAPPAEPAPPAEAP 496
           A    A A         E P
Sbjct: 178 AEEKAAPAAAKPATTEGEFP 197

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 47.6 bits (114), Expect = 6e-06
 Identities = 26/138 (18%), Positives = 31/138 (22%), Gaps = 30/138 (21%)

Query: 387 AEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
            EG     G                  +    A+     E     E   A A  APA  A
Sbjct: 62  PEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEA 121

Query: 447 EGAPRAEG-APPA-----------------------------EGAPAPPAEGAPAPPAEG 476
           E  P     A P+                             +   A  A+ APA   E 
Sbjct: 122 EAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEK 181

Query: 477 APAPPADAPPAEPAPPAE 494
           A    A     E   P  
Sbjct: 182 AAPAAAKPATTEGEFPET 199

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 17/136 (12%), Positives = 20/136 (14%), Gaps = 18/136 (13%)

Query: 363 AEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAP 422
            EG     G        P       +G    E     +       E         PA   
Sbjct: 62  PEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEA 121

Query: 423 PPAEGAP----------AAEGAPAPAEGAPAPPA--------EGAPRAEGAPPAEGAPAP 464
                            A E                      +        P    A   
Sbjct: 122 EAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEK 181

Query: 465 PAEGAPAPPAEGAPAP 480
            A  A  P       P
Sbjct: 182 AAPAAAKPATTEGEFP 197

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 29/119 (24%), Positives = 37/119 (31%), Gaps = 16/119 (13%)

Query: 350 PADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEG 409
             D     +        P  E +  A  A  A+           +   A      PP   
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQA----AYPPQGY 393

Query: 410 PPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG 468
            PP +G PP   PP             P +G P PP       +GAPP    PA P +G
Sbjct: 394 APPPQGYPPQGYPPQGYPPQGY-----PPQGYPPPP-------QGAPPQGAPPAAPPQG 440

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 323 SVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 382
              KD      + E ++        +     A   +        PP   APP +G PP  
Sbjct: 345 EDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPP-- 402

Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPA 425
              P +G PP +G P  +G P PP   PP  +GAPPA APP  
Sbjct: 403 QGYPPQGYPP-QGYPP-QGYPPPPQGAPP--QGAPPA-APPQG 440

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 27/95 (28%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
            P  E    A  A  A+           +   A       PP   AP  +G PP      
Sbjct: 354 IPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAY-----PPQGYAPPPQGYPP--QGYP 406

Query: 464 PPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPA 498
           P        P +G P PP  APP + APPA  P  
Sbjct: 407 PQGYPPQGYPPQGYPPPPQGAPP-QGAPPAAPPQG 440

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 3/101 (2%)

Query: 403 PAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAP 462
                E     +      A   ++ AP+A+ A      A     +        PP   AP
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQ--AAYPPQGYAP 395

Query: 463 APPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
            P        P +G P P    P   P PP  APP  + PA
Sbjct: 396 PPQGYPPQGYPPQGYP-PQGYPPQGYPPPPQGAPPQGAPPA 435

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 12/122 (9%)

Query: 319 PLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGA 378
           P + +  +   +     ++ E   P  E    A  A  A+           +        
Sbjct: 331 PWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQ--AAY 388

Query: 379 PPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
           PP   APP +G PP    P        P +G PP    PP  APP  +GAP A    AP 
Sbjct: 389 PPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPP----PPQGAPP--QGAPPA----APP 438

Query: 439 EG 440
           +G
Sbjct: 439 QG 440

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 27/104 (25%), Positives = 36/104 (34%), Gaps = 4/104 (3%)

Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPP 445
             +     +   A    PA  +    P+  A   +           + A  P +G  APP
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGY-APP 396

Query: 446 AEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEP 489
            +G P     P        P +G P PP     APP  APPA P
Sbjct: 397 PQGYPPQGYPPQGYPPQGYPPQGYPPPP---QGAPPQGAPPAAP 437

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 29/127 (22%), Positives = 37/127 (29%), Gaps = 23/127 (18%)

Query: 358 EGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
                 E     +          ++ AP A+ A   E     +      A  PP     P
Sbjct: 337 CQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPP 396

Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
           P   PP                     P +G P  +G PP +G P PP     APP    
Sbjct: 397 PQGYPPQG------------------YPPQGYP-PQGYPP-QGYPPPP---QGAPPQGAP 433

Query: 478 PAPPADA 484
           PA P   
Sbjct: 434 PAAPPQG 440

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 29/129 (22%), Positives = 43/129 (33%), Gaps = 14/129 (10%)

Query: 320 LLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAP 379
           + ++        Q   +ETE  +         + +  A  A  A+           +   
Sbjct: 326 ISQTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQ 385

Query: 380 PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE 439
                PP   APP +G          P +G PP     P +  PP    P  +GAP P  
Sbjct: 386 --AAYPPQGYAPPPQG---------YPPQGYPPQ--GYPPQGYPPQGYPPPPQGAP-PQG 431

Query: 440 GAPAPPAEG 448
             PA P +G
Sbjct: 432 APPAAPPQG 440

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Length = 503

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 25/175 (14%), Positives = 42/175 (24%)

Query: 221 PEPEPEPESATDASDVEDGKETPLPPEGEQPPVEEVPPPPEPEPEPPVEEIPPTPPSPVT 280
             PE E E   +   VE+  +   P +  +  VEE P                     V 
Sbjct: 20  QTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVA 79

Query: 281 PNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATPQPLLKSVVKDTLRRQASHEETEG 340
            + +                   + V      +        ++V  +  + +A   E   
Sbjct: 80  ESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEAVSPEEWQAEAETVEIVE 139

Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEG 395
              +   +                        PPAE   P E     +  P  EG
Sbjct: 140 AAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPVEEIAQEQEKPTKEG 194

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Length = 503

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 29/191 (15%), Positives = 43/191 (22%), Gaps = 16/191 (8%)

Query: 258 PPPEPEPEPPVEEIPPTPPSPVTPNPEELWLYLKDTVSASNPVSIDDLVEKLMSAVSATP 317
             PE E E   E+             +                S   + E+  +   A  
Sbjct: 20  QTPEKETEVQNEQPVVEEIVQAQEPVKA---------------SEQAVEEQPQAHTEAEA 64

Query: 318 QPLLKSVVKDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEG 377
           +     VV+ T +   S +     E   + E   +  P        E  P  E       
Sbjct: 65  ETFAADVVEVTEQVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREE-LPLPEDVNAEAV 123

Query: 378 APPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
           +P    A              A        E           EA      A   +     
Sbjct: 124 SPEEWQAEAETVEIVEAAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPVEEI 183

Query: 438 AEGAPAPPAEG 448
           A+    P  EG
Sbjct: 184 AQEQEKPTKEG 194

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 31/144 (21%), Positives = 32/144 (22%), Gaps = 3/144 (2%)

Query: 354 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPA 413
            PP +    A          P  G     G P      P   APA    P     GP   
Sbjct: 84  GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAG---VPMPQAPAGLAGPVRGVGGPSQQ 140

Query: 414 EGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPP 473
              P       A  A A           P       P      P  G   PP    P   
Sbjct: 141 VMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG 200

Query: 474 AEGAPAPPADAPPAEPAPPAEAPP 497
                 P    P   P P    PP
Sbjct: 201 PPMGIPPGRGTPMGMPPPGMRPPP 224

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 36/139 (25%), Positives = 39/139 (28%), Gaps = 2/139 (1%)

Query: 366 APPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPP--AEGPPPAEGAPPAEAPP 423
            PP +    A          P  G     G PA    P  P    GP    G P  +   
Sbjct: 84  GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143

Query: 424 PAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
           P      A  A A        P +  P   G PP  G  APP      PP    P  P  
Sbjct: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPM 203

Query: 484 APPAEPAPPAEAPPAESAP 502
             P     P   PP    P
Sbjct: 204 GIPPGRGTPMGMPPPGMRP 222

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 46.6 bits (110), Expect = 7e-06
 Identities = 27/141 (19%), Positives = 28/141 (19%)

Query: 349 APADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAE 408
            P      A          P  G     G P     P A              +      
Sbjct: 85  PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144

Query: 409 GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEG 468
                  A  A A     GAP            P       P   G PP    P  P  G
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204

Query: 469 APAPPAEGAPAPPADAPPAEP 489
            P         PP    P  P
Sbjct: 205 IPPGRGTPMGMPPPGMRPPPP 225

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 29/139 (20%), Positives = 33/139 (23%)

Query: 335 HEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAE 394
            ++T        G A   G   A G     G P  +      G     G P  +   P  
Sbjct: 87  PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146

Query: 395 GAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG 454
               A  A A  A         PP    PP      A             P  G P    
Sbjct: 147 RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIP 206

Query: 455 APPAEGAPAPPAEGAPAPP 473
                    PP    P PP
Sbjct: 207 PGRGTPMGMPPPGMRPPPP 225

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 26/96 (27%), Positives = 29/96 (30%)

Query: 402 APAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGA 461
              PP +    A       A  P  G  A  G PA      AP     P      P++  
Sbjct: 82  VEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQV 141

Query: 462 PAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
             P   G  A  A  A A  A AP   P      PP
Sbjct: 142 MTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPP 177

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 40.0 bits (93), Expect = 9e-04
 Identities = 28/128 (21%), Positives = 32/128 (25%), Gaps = 3/128 (2%)

Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
           G  +  G     G P  +      G     G P  +   P      A  A  A  + A  
Sbjct: 105 GIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGA 164

Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
               PP  G PP    P     PP        G   P       P          PP   
Sbjct: 165 PTQYPPGRGGPPP---PMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMR 221

Query: 461 APAPPAEG 468
            P P   G
Sbjct: 222 PPPPGMRG 229

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 29/101 (28%), Positives = 32/101 (31%), Gaps = 7/101 (6%)

Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
            AP + G P    A A + A   PA   PPA GA P   P P +        P    G  
Sbjct: 3   AAPTSPGTP--GVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60

Query: 443 APPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPAD 483
           A  A G      A   E      AE   A      P   A 
Sbjct: 61  ATVAAGH-----ATLREHLRDIKAENTDANFYVCPPPTGAT 96

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 47.6 bits (113), Expect = 8e-06
 Identities = 26/93 (27%), Positives = 29/93 (31%), Gaps = 4/93 (4%)

Query: 397 PAAEGAPAPPAEGPPPAEGAP--PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEG 454
           PAA  +P  P       + A   PA   PPA GA             P  P    P  + 
Sbjct: 2   PAAPTSPGTP-GVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60

Query: 455 APPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
           A  A G  A   E      AE   A     PP 
Sbjct: 61  ATVAAG-HATLREHLRDIKAENTDANFYVCPPP 92

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 26/94 (27%), Positives = 27/94 (28%), Gaps = 2/94 (2%)

Query: 353 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPP 412
            AP + G P    A  A    PA  APPA GA P     P          P PP      
Sbjct: 3   AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPT--GDPKPKKNKKPKNPTPPRPAGDN 60

Query: 413 AEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPA 446
           A  A              AE   A     P P  
Sbjct: 61  ATVAAGHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 20/74 (27%), Positives = 21/74 (28%)

Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
           PAA  +P     A A  A     A  APPA GA                P PP  A    
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 489 PAPPAEAPPAESAP 502
                 A   E   
Sbjct: 62  TVAAGHATLREHLR 75

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 25/79 (31%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 423 PPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPA 482
           P A  +P   G  A  + A   PA  AP A GA P  G P P     P  P    PA   
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPT-GDPKPKKNKKPKNPTPPRPAGDN 60

Query: 483 DAPPAEPAPPAEAPPAESA 501
               A  A   E      A
Sbjct: 61  ATVAAGHATLREHLRDIKA 79

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 22/98 (22%), Positives = 25/98 (25%), Gaps = 6/98 (6%)

Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
           AP + G P    A   +A       PA     A   G P P     P+    P   G  A
Sbjct: 4   APTSPGTP--GVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 464 PPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESA 501
                  A  A               A     PP   A
Sbjct: 62  TV----AAGHATLREHLRDIKAENTDANFYVCPPPTGA 95

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 19/83 (22%), Positives = 21/83 (25%), Gaps = 2/83 (2%)

Query: 418 PAEAPPPAE--GAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
           PA    P     A A + A         P    AP  +  P     P  P    PA    
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 476 GAPAPPADAPPAEPAPPAEAPPA 498
              A  A          AE   A
Sbjct: 62  TVAAGHATLREHLRDIKAENTDA 84

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 18/94 (19%), Positives = 22/94 (23%), Gaps = 2/94 (2%)

Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
            AP + G P    A   + A      P      AA      P +   P    PP  A   
Sbjct: 3   AAPTSPGTP--GVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60

Query: 425 AEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
           A  A              A   +        P  
Sbjct: 61  ATVAAGHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 28/95 (29%), Positives = 30/95 (31%), Gaps = 8/95 (8%)

Query: 362 PAEGAPPAE--GAPPAEGAP--PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAP 417
           PA    P     A   + A   PA  APPA GA P  G P  +    P    PP   G  
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPT-GDPKPKKNKKPKNPTPPRPAGDN 60

Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAP---APPAEGA 449
              A   A          A    A     PP  GA
Sbjct: 61  ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 18/96 (18%), Positives = 18/96 (18%), Gaps = 1/96 (1%)

Query: 380 PAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAE 439
           PA    P      A    A  G   P       A    P          P     PA   
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNP-TPPRPAGDN 60

Query: 440 GAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAE 475
              A              AE   A      P   A 
Sbjct: 61  ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGAT 96

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 22/87 (25%), Positives = 24/87 (27%)

Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
           G P       A    PA  APPA GA P     P +   P    PP      A  A    
Sbjct: 9   GTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHA 68

Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEG 427
                  +       A     PPP   
Sbjct: 69  TLREHLRDIKAENTDANFYVCPPPTGA 95

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 41.1 bits (96), Expect = 9e-04
 Identities = 23/96 (23%), Positives = 26/96 (27%), Gaps = 4/96 (4%)

Query: 342 EP-KPEGEAPADGAPPAEGAP--PAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
           +P  P        A   + A   PA  APPA GA P     P +   P    PP   A  
Sbjct: 1   DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRP-AGD 59

Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGA 434
                A  A                     P   GA
Sbjct: 60  NATVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 32/197 (16%), Positives = 73/197 (37%), Gaps = 37/197 (18%)

Query: 13   AEAAAASAEDEAKRLKLEE-----LERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLL 67
            A+      + EA+ ++  +     LE K  +++R+++              E+ K+ + L
Sbjct: 902  AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKID--------------EQNKEYKSL 947

Query: 68   LRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIK 127
            L K    E+    E   L              D + +   E  +  +    R+ +L+   
Sbjct: 948  LEKMNNLEITYSTETEKLR------------SDVERLRMSE--EEAKNATNRVLSLQEEI 993

Query: 128  YELDREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLK 187
             +L +E+     E   + +  +  + +      + VS+ + +   L+ +  E N R   +
Sbjct: 994  AKLRKELHQTQTEKKTIEEWADKYKHE----TEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049

Query: 188  AVKKREFSMEDAEKEKK 204
            A +  E   +   +E K
Sbjct: 1050 AKEITETMEKKLVEETK 1066

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 39/218 (17%), Positives = 85/218 (38%), Gaps = 17/218 (7%)

Query: 14   EAAAASAEDEAKRLK--LEELERKRAEVRRRMEEASGARRKKGFMTPERKKKLRLLLRKK 71
            +A     + +   L+  LEE E  R +++     A G  +K        + +   L +++
Sbjct: 947  QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER 1006

Query: 72   AAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELD 131
               E +       L  +    +   + K+  +    E+    ++  +    LE IK +L+
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066

Query: 132  REIMLKDFEITELGKQVNDLRGKFVR------PILKKVSKYENKFAKLQKKAAEF----- 180
             E      +I EL  Q+ +L+ +  +        L ++    ++     KK  E      
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126

Query: 181  NFRSQLKAVKKREFSMEDAEKEKKPEWVKEPESKKKRI 218
            + +  L++ K    +   AEK+K+ +  +E E+ K  +
Sbjct: 1127 DLQEDLESEKA---ARNKAEKQKR-DLSEELEALKTEL 1160

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 25/193 (12%), Positives = 59/193 (30%), Gaps = 10/193 (5%)

Query: 32  LERKRAEVRRRMEEASGARRK-KGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRV 90
            E K+ E   + +E S          T  R  K    +        + +    ALE+   
Sbjct: 801 KEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAE- 859

Query: 91  IDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIK--YELDREIMLKDFEITELGKQV 148
             +   E    +   + +I  L Q+Y + +  LE       +          IT +  ++
Sbjct: 860 --QEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKL 917

Query: 149 NDLRGKFVRPILKKVSKYENKFAKLQKKAAEFNFRSQLKAVKKREFSMEDAEK---EKKP 205
            +L   F         +  +    +  +  E N+    +  ++++               
Sbjct: 918 KNLE-AFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAE 976

Query: 206 EWVKEPESKKKRI 218
            +     ++ +R+
Sbjct: 977 TYKNTLLAELERL 989

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 44/157 (28%), Positives = 56/157 (35%), Gaps = 2/157 (1%)

Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
           G   P GE  + G    +G+P   G P   G P A+G   + G+P  +G     G    +
Sbjct: 341 GPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGED 400

Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
           G P P   GPP A G       P  +GA    G          P A G    +G   A+G
Sbjct: 401 GRPGPA--GPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQG 458

Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
            P P            A +P     P    PP EA  
Sbjct: 459 PPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGK 495

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 41/154 (26%), Positives = 50/154 (32%), Gaps = 2/154 (1%)

Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
           GE    G A   G+P   G P   G P A+G   + G+P  +G     G    +G P   
Sbjct: 347 GERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPA 406

Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
           G P     G     G P  +      G     G P P         +G   A+G P   G
Sbjct: 407 GPPGAR--GQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAG 464

Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAE 494
                 E  PA        P    PP E   P E
Sbjct: 465 PAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGE 498

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 40/155 (25%), Positives = 46/155 (29%), Gaps = 1/155 (0%)

Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
           E G P   G   ADG    +G     G+P   G   + G     G     GA    G+P 
Sbjct: 324 ERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPG 383

Query: 399 AEGAP-APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
           + G        GP   +G P    PP A G     G P P   A  P   G     G P 
Sbjct: 384 SPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPG 443

Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
           A G      E     P   A              P
Sbjct: 444 AVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSP 478

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 38/154 (24%), Positives = 45/154 (29%), Gaps = 2/154 (1%)

Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
           E G P   G   A G   + G+P  +G     G    +G P   G P A G     G P 
Sbjct: 363 EAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPG 422

Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
            +GA   P  G     G P         G     GA  P   A      G     G+P  
Sbjct: 423 PKGAAGEP--GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 480

Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
           +G P P      A        P     P      
Sbjct: 481 QGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGAR 514

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 37/157 (23%), Positives = 42/157 (26%), Gaps = 2/157 (1%)

Query: 341 GEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAE 400
           G    +G     G P A G     G P  +GA    G     G P   GA    G     
Sbjct: 395 GPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEA 454

Query: 401 GAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEG 460
           GA  PP  GP    G    + P  + G     G   P   A  P  +G P   GAP   G
Sbjct: 455 GAQGPP--GPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSG 512

Query: 461 APAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
           A                           P        
Sbjct: 513 ARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGD 549

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 49/160 (30%), Positives = 56/160 (35%), Gaps = 1/160 (0%)

Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
           + G+  P+G   A G     G     G P   GAP  +G     G     GA  A G   
Sbjct: 582 DRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRG 641

Query: 399 AEGAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
             G P P    GPP A+G P A+  P   GA    G P PA  A  P   G   A G   
Sbjct: 642 EPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKG 701

Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPP 497
           A G+  PP        A     P        P PP  A  
Sbjct: 702 ARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGK 741

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 39/154 (25%), Positives = 46/154 (29%), Gaps = 2/154 (1%)

Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
             GEP   GE    G   A GAP  +G   A+G P  +G    +G     G P  +G P 
Sbjct: 419 PTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPG 478

Query: 399 AEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPA 458
             G       G P   G       P   GA    G P     A      G+    G P  
Sbjct: 479 PAGPAGEA--GKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGP 536

Query: 459 EGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
           +G         PA     A  P           P
Sbjct: 537 DGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVP 570

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 31/128 (24%), Positives = 39/128 (30%), Gaps = 1/128 (0%)

Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
             G   P G+    G P  +G P   G     G   A G P  +G     G P  +G   
Sbjct: 374 SPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVG 433

Query: 399 AEGAP-APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
             GA  AP  +G   A+G P  +     +G     G P            G     G   
Sbjct: 434 LAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERG 493

Query: 458 AEGAPAPP 465
             G    P
Sbjct: 494 LHGEFGLP 501

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 37/155 (23%), Positives = 40/155 (25%), Gaps = 1/155 (0%)

Query: 339 EGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPA 398
             G P   G   ADG     G   + G     G     G     G P   G     G+P 
Sbjct: 317 LRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPG 376

Query: 399 AEGAPAPPAE-GPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
             G        G P  +G P    P    G   A G P P      P   G     G   
Sbjct: 377 NIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAG 436

Query: 458 AEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
           A GAP P        P                 PP
Sbjct: 437 ARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPP 471

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 29/88 (32%), Positives = 31/88 (35%), Gaps = 2/88 (2%)

Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
           P  GA  A+  P       A    A    APA  A  A   E AP A     P AE  PA
Sbjct: 295 PLYGAQMAKDYPGL--YKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPA 352

Query: 472 PPAEGAPAPPADAPPAEPAPPAEAPPAE 499
               GA        PA     A AP A+
Sbjct: 353 AAEPGAAEAAGSVEPAPVEEVAPAPAAQ 380

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 32/84 (38%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 356 PAEGAPPAEGAPPAEG-APPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAE 414
           P  GA  A+  P     A   E  P +  A  A  A   E AP A     P AE  P A 
Sbjct: 295 PLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAA 354

Query: 415 GAPPAEAPPPAEGAPAAEGAPAPA 438
               AEA    E AP  E APAPA
Sbjct: 355 EPGAAEAAGSVEPAPVEEVAPAPA 378

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 41.0 bits (95), Expect = 6e-04
 Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 424 PAEGAPAAEGAPAPAEGAPAPPAE--GAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPP 481
           P  GA  A+  P   + A    A    AP +E AP A    AP A     P AE  PA  
Sbjct: 295 PLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAA 354

Query: 482 ADAPPAEPAPPAEAPPAESAPA 503
                        AP  E APA
Sbjct: 355 EPGAAEAAGSVEPAPVEEVAPA 376

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 40.6 bits (94), Expect = 9e-04
 Identities = 26/86 (30%), Positives = 29/86 (33%), Gaps = 2/86 (2%)

Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
           P  GA  A+  P               A A   A  A       APA+  PA  A  A  
Sbjct: 295 PLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAA 354

Query: 452 AEG--APPAEGAPAPPAEGAPAPPAE 475
             G         PAP  E APAP A+
Sbjct: 355 EPGAAEAAGSVEPAPVEEVAPAPAAQ 380

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 10/64 (15%), Positives = 15/64 (23%)

Query: 383 GAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
           G+        +   P     P       P        ++  P  G PA  G     +G  
Sbjct: 2   GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61

Query: 443 APPA 446
               
Sbjct: 62  GSAG 65

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 12/68 (17%), Positives = 16/68 (23%), Gaps = 1/68 (1%)

Query: 436 APAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
             ++      +   PR     P  G  A PA         GAP     AP          
Sbjct: 2   GSSQHHHHHSSGLVPRG-SHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGG 60

Query: 496 PPAESAPA 503
             +     
Sbjct: 61  YGSAGTSV 68

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 8/64 (12%), Positives = 15/64 (23%)

Query: 419 AEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAP 478
           ++            G+  P  G  A PA        +   +     P   +         
Sbjct: 4   SQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGS 63

Query: 479 APPA 482
           A  +
Sbjct: 64  AGTS 67

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 11/77 (14%), Positives = 14/77 (18%)

Query: 365 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPP 424
           G+        +   P     P   G     G     G    P  G P   G         
Sbjct: 2   GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61

Query: 425 AEGAPAAEGAPAPAEGA 441
                +         G 
Sbjct: 62  GSAGTSVTLQLDDGSGR 78

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 10/58 (17%), Positives = 12/58 (20%)

Query: 430 AAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
               +     G+  P   G     G     G    P  G PAP               
Sbjct: 8   HHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAG 65

>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 295

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 16/97 (16%), Positives = 20/97 (20%)

Query: 346 EGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAP 405
             E   D     +     +    A      +     E   PA     A+   A       
Sbjct: 194 PWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGVQ 253

Query: 406 PAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAP 442
               P          A P  E   AA  A A      
Sbjct: 254 VPSVPIQQFPTEDWSAQPSTEDWSAAPTAQATEWVGT 290

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 20/136 (14%), Positives = 29/136 (21%), Gaps = 3/136 (2%)

Query: 344 KPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAP 403
             +   P  G        P +G+P     PP  G    +      G P   G     G  
Sbjct: 2   SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG 61

Query: 404 APPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPA 463
                 P       P       +G    +               GA  A       G   
Sbjct: 62  WGQ---PHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYM 118

Query: 464 PPAEGAPAPPAEGAPA 479
             +  +      G+  
Sbjct: 119 LGSAMSRPLIHFGSDY 134

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 14/126 (11%), Positives = 16/126 (12%)

Query: 373 PPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAE 432
                 P           P           P        P  G                 
Sbjct: 2   SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG 61

Query: 433 GAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPP 492
                  G   P   G     G       P+ P           A               
Sbjct: 62  WGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGS 121

Query: 493 AEAPPA 498
           A + P 
Sbjct: 122 AMSRPL 127

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 20/118 (16%), Positives = 24/118 (20%)

Query: 340 GGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAA 399
           GG        P  G+P     PP  G    +      G P   G     G    +     
Sbjct: 10  GGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGG 69

Query: 400 EGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPP 457
            G P                +   P        GA A               A   P 
Sbjct: 70  WGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPL 127

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 40.2 bits (93), Expect = 7e-04
 Identities = 19/131 (14%), Positives = 24/131 (18%), Gaps = 1/131 (0%)

Query: 359 GAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAE-GAP 417
              P  G        P +G+P     PP  G    +      G P     G P       
Sbjct: 5   RPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ 64

Query: 418 PAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGA 477
           P              G          P          A  A         G     +  +
Sbjct: 65  PHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMS 124

Query: 478 PAPPADAPPAE 488
                     E
Sbjct: 125 RPLIHFGSDYE 135

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 19/77 (24%), Positives = 26/77 (33%)

Query: 412 PAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPA 471
           P E  P       +    A   APA      A PA     A  A P + AP    +   A
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDVIRA 153

Query: 472 PPAEGAPAPPADAPPAE 488
             A+       + PP++
Sbjct: 154 LVAQKLKKELTEIPPSK 170

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 19/56 (33%), Positives = 23/56 (41%)

Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAE 447
           P E  P    A A  A+  P A  A PA        APA+ G  AP + AP    +
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATD 149

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 17/58 (29%), Positives = 22/58 (37%)

Query: 381 AEGAPPAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPA 438
            +  P  +   P   A ++  A    A   P A  A PA AP  A  A   + AP  A
Sbjct: 90  YDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 20/55 (36%), Positives = 23/55 (41%)

Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAP 485
            +  P   E  P P A  +  A  A       AP A  APAP + G  AP  DAP
Sbjct: 90  YDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 22/71 (30%), Positives = 25/71 (35%)

Query: 429 PAAEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAE 488
              E  P PA  + A  A  A  A  A PA      PA   PA P + AP    D   A 
Sbjct: 95  IEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDVIRAL 154

Query: 489 PAPPAEAPPAE 499
            A   +    E
Sbjct: 155 VAQKLKKELTE 165

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 18/47 (38%), Positives = 20/47 (42%)

Query: 457 PAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEAPPAESAPA 503
           P E  P P    A +  A  A AP A A PA    PA A    +AP 
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPV 140

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 19/59 (32%), Positives = 21/59 (35%)

Query: 437 PAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPAEPAPPAEA 495
           P     A   E A     AP    +   PA  APAP A  APA  A     EP   +  
Sbjct: 92  PDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASLL 150

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 14/55 (25%), Positives = 15/55 (27%)

Query: 431 AEGAPAPAEGAPAPPAEGAPRAEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAP 485
               P+       P  E AP    A  A    A       A     A A  AD P
Sbjct: 90  YTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 40.5 bits (94), Expect = 8e-04
 Identities = 22/112 (19%), Positives = 29/112 (25%)

Query: 326 KDTLRRQASHEETEGGEPKPEGEAPADGAPPAEGAPPAEGAPPAEGAPPAEGAPPAEGAP 385
           + T+      +         + E   +           +    AE A PA      E   
Sbjct: 190 RGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGT 249

Query: 386 PAEGAPPAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAP 437
            A   P A  A A     A PA      + A           AP    AP P
Sbjct: 250 DAAAQPAAIPAQAGADWTAAPAPAAGGWDTAAAPAPGWEQGSAPVPAAAPTP 301

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 19/96 (19%), Positives = 24/96 (25%), Gaps = 1/96 (1%)

Query: 392 PAEGAPAAEGAPAPPAEGPPPAEGAPPAEAPPPAEGAPAAEGAPAPAEGAPAPPAEGAPR 451
           P       +    PP      + GA P  A   AE A  A    +PA  +P     G   
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSG-GGGF 77

Query: 452 AEGAPPAEGAPAPPAEGAPAPPAEGAPAPPADAPPA 487
                 A       A    +    G          A
Sbjct: 78  FSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAA 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	503
1j1e_C	180	Troponin I, TNI; THIN filament, muscle regulation,	100.0
1ytz_I	182	Troponin I; muscle, THIN filament, actin binding,	100.0
1j1d_C	133	Troponin I, TNI; THIN filament, muscle regulation,	100.0
1ytz_T	107	Troponin T; muscle, THIN filament, actin binding,	99.96
1j1d_B	106	Troponin T, TNT; THIN filament, muscle regulation,	99.96
1a2x_B	47	Troponin I; muscle contraction regulation, complex	99.16
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	90.52
3lay_A	175	Zinc resistance-associated protein; salmonella typ	85.54
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	84.03
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	81.05

>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2

Probab=100.00  E-value=2e-64  Score=465.70  Aligned_cols=165  Identities=28%  Similarity=0.482  Sum_probs=108.2

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhH
Q psy9560          51 RKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYEL  130 (503)
Q Consensus        51 AKKgKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDL  130 (503)
                      .+|||||++||++||+|||++|+++|++|+++++++|++||+||| ++|||||||+++|+++|++||+||++||++||||
T Consensus         6 ~kk~~mt~~Rk~~Lk~lll~kA~e~L~~E~e~k~eEKkkiLaER~-kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDl   84 (180)
T 1j1e_C            6 KKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRA-QPLELAGLGFAELQDLARQLHARVDKVDEERYDI   84 (180)
T ss_dssp             CCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            378999999999999999999999999999999999999999999 5789999999999999999999999999999999


Q ss_pred             HHHHhhhhhhHHHHHHHHHHhhCCCCCCccccccccHHHH-HH-HH-hhhhccchhhhcccccccccchhhhhhccCccc
Q psy9560         131 DREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYENKF-AK-LQ-KKAAEFNFRSQLKAVKKREFSMEDAEKEKKPEW  207 (503)
Q Consensus       131 E~KVkKQDyEInELniKVnDLRGKFKKPaLKKVRkSAnm~-a~-L~-KhkvsmDfRANLKqVKKEe~~leEeekeeVgDW  207 (503)
                      |++|++|+|||++||+|||||+|||+||+|||||||+|.| .+ |+ ||+++||||+|||||||++.   ++++++||||
T Consensus        85 E~kvkkqdyEI~dL~~rV~DLrGKFkKP~LkkV~~s~d~m~~allg~k~~~~~d~RanLK~Vkke~~---e~~~~~~~dW  161 (180)
T 1j1e_C           85 EAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDT---EKENREVGDW  161 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHSCC--------------------------------
T ss_pred             HHHHHhcchhHHHHHHHHHHHHhcccccchhhhcccHHHHHHHHHHhhHhhhhhHHHhccccccccc---cccccccchH
Confidence            9999999999999999999999999999999999999654 44 53 89999999999999999863   4456699999


Q ss_pred             cccchhhccCCC
Q psy9560         208 VKEPESKKKRIP  219 (503)
Q Consensus       208 RKNiE~K~~~e~  219 (503)
                      |||||++++|+-
T Consensus       162 rkn~e~~~gm~g  173 (180)
T 1j1e_C          162 RKNIDALSGMEG  173 (180)
T ss_dssp             ------------
T ss_pred             HHHHHHhcCcch
Confidence            999999999863

>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A

Probab=100.00  E-value=4.7e-63  Score=457.18  Aligned_cols=163  Identities=25%  Similarity=0.436  Sum_probs=130.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHH
Q psy9560          52 KKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELD  131 (503)
Q Consensus        52 KKgKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE  131 (503)
                      +++|||++||++||+|||++|+++|++|+++++++|++||+||| +|||||| |+++|+++|++||+||++||++|||||
T Consensus         5 ~k~kmt~~Rk~~Lk~lll~kA~e~L~~E~e~k~eeKkkiLaER~-kPLnid~-se~~L~e~ckELh~~I~~LEeEKYDlE   82 (182)
T 1ytz_I            5 KKRRAATARRQHLKSAMLQLAVTEIEKEAAAKEVEKQNYLAEHS-PPLSLPG-SMQELQELSKKLHAKIDSVDEERYDTE   82 (182)
T ss_dssp             STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            67899999999999999999999999999999999999999999 6889999 999999999999999999999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhCCCCCCccccccccHH-HHHH-HH-hhhhccchhhhcccccccccchhhhhhc--cCcc
Q psy9560         132 REIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYEN-KFAK-LQ-KKAAEFNFRSQLKAVKKREFSMEDAEKE--KKPE  206 (503)
Q Consensus       132 ~KVkKQDyEInELniKVnDLRGKFKKPaLKKVRkSAn-m~a~-L~-KhkvsmDfRANLKqVKKEe~~leEeeke--eVgD  206 (503)
                      ++|++|+|||++||+|||||+|||+||+|||||||+| ||.. |+ ||+++||||+|||||||+++   +++++  +|||
T Consensus        83 ~kvkkq~yEI~dL~~rVnDLrGKfkKP~LkkV~~sad~m~kallg~k~k~~~d~RanLK~Vkke~~---e~~~~~~~~~d  159 (182)
T 1ytz_I           83 VKLQKTNKELEDLSQKLFDLRGKFKRPPLRRVRMSADAMLRALLGSKHKVNMDLRANLKQVKKEDT---EKEKDLRDVGD  159 (182)
T ss_dssp             HHHHHHHHHHHHHTTTTGGGTCSCSSCSSCCCCCCHHHHHHHHHTTCCCCCCSSCCCCCCC-------------------
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhhhcccchhhccccHhHHHHHHhCCCchhhhhHHHhccccccchh---hhhhhhccccc
Confidence            9999999999999999999999999999999999995 4555 44 88999999999999999873   34455  8999


Q ss_pred             ccccchhhccCCC
Q psy9560         207 WVKEPESKKKRIP  219 (503)
Q Consensus       207 WRKNiE~K~~~e~  219 (503)
                      ||||||++++|+-
T Consensus       160 Wrkn~e~~~gm~g  172 (182)
T 1ytz_I          160 WRKNIEEKSGMEG  172 (182)
T ss_dssp             -------------
T ss_pred             HHHHHHhhcCcch
Confidence            9999999999864

>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2

Probab=100.00  E-value=1.6e-48  Score=345.86  Aligned_cols=122  Identities=30%  Similarity=0.511  Sum_probs=109.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhH
Q psy9560          51 RKKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYEL  130 (503)
Q Consensus        51 AKKgKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDL  130 (503)
                      ++|||||++||++||+|||++|+++|++|+++++++|++||+||| +++||||||+++|+++|++||+||++||+|||||
T Consensus         6 ~~k~~mt~~Rk~~Lk~lll~kA~e~l~kE~e~k~eeKkkiLaER~-~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDl   84 (133)
T 1j1d_C            6 KKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRA-QPLELAGLGFAELQDLARQLHARVDKVDEERYDI   84 (133)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            378999999999999999999999999999999999999999999 6889999999999999999999999999999999


Q ss_pred             HHHHhhhhhhHHHHHHHHHHhhCCCCCCccccccccH-HHHHHH
Q psy9560         131 DREIMLKDFEITELGKQVNDLRGKFVRPILKKVSKYE-NKFAKL  173 (503)
Q Consensus       131 E~KVkKQDyEInELniKVnDLRGKFKKPaLKKVRkSA-nm~a~L  173 (503)
                      |++|++|+|||++||+|||||+|||+||+|||||||+ .||..|
T Consensus        85 E~kvkkq~yEI~dL~~rV~Dl~gKfkKP~LkkVr~sad~ml~al  128 (133)
T 1j1d_C           85 EAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQAL  128 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC--------CCCCCCHHHHHHHH
T ss_pred             HHHHHHcchHHHHHHHHHHHHHcccCCCccCccccCHHHHHHHH
Confidence            9999999999999999999999999999999999999 456555

>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1

Probab=99.96  E-value=2.4e-30  Score=222.38  Aligned_cols=90  Identities=26%  Similarity=0.480  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHH
Q psy9560          68 LRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQ  147 (503)
Q Consensus        68 LLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniK  147 (503)
                      +|+++..... ..++.+++|++||+||| +||||||||+++|+++|++||+||++||+||||||++|++|+|||++||+|
T Consensus         8 ~~~k~e~~~~-k~q~e~EeKkkiLaER~-~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~r   85 (107)
T 1ytz_T            8 YLAKADQKRG-KKQTARETKKKVLAERR-KPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNR   85 (107)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHTC-CCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccc-HHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Confidence            4566555543 33445568999999999 688999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCCcc
Q psy9560         148 VNDLRGKFVRPIL  160 (503)
Q Consensus       148 VnDLRGKFKKPaL  160 (503)
                      |||| |||+||+.
T Consensus        86 V~dl-gKfkKp~~   97 (107)
T 1ytz_T           86 IDQA-QKHSKKAG   97 (107)
T ss_dssp             HHHT-CCCC----
T ss_pred             HHHh-cCccCCCC
Confidence            9999 99999987

>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B

Probab=99.96  E-value=2.6e-30  Score=222.03  Aligned_cols=91  Identities=30%  Similarity=0.480  Sum_probs=66.7

Q ss_pred             HHHH-HHHHHHHHHHHH-HHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHH
Q psy9560          68 LRKK-AAEELKREQERR-ALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELG  145 (503)
Q Consensus        68 LLqK-AaEELEKEKEqK-eEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELn  145 (503)
                      +|++ |..+..+.+++. +++|++||+||| +||||||||+++|+++|++||+||++||+||||||++|++|+|||++||
T Consensus         5 ~l~~~~~~e~~~~k~q~ereeKkkiLaER~-kpL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~   83 (106)
T 1j1d_B            5 YIQKQAQTERKSGKRQTEREKKKKILAERR-KVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLR   83 (106)
T ss_dssp             ---------------CCHHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHhcccHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHH
Confidence            4555 334444445554 599999999999 6889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCCcc
Q psy9560         146 KQVNDLRGKFVRPIL  160 (503)
Q Consensus       146 iKVnDLRGKFKKPaL  160 (503)
                      +||||| |||+||+-
T Consensus        84 ~rV~dl-gKf~Kp~~   97 (106)
T 1j1d_B           84 NRINDN-QKVSKTRG   97 (106)
T ss_dssp             HHHHTC---------
T ss_pred             HHHHHh-cCccCCCC
Confidence            999999 99999974

>1a2x_B Troponin I; muscle contraction regulation, complex (skeletal muscle/muscle protein); 2.30A {Oryctolagus cuniculus} SCOP: j.22.1.1

Probab=99.16  E-value=2.6e-12  Score=97.28  Aligned_cols=43  Identities=28%  Similarity=0.469  Sum_probs=27.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9560          52 KKGFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDER   94 (503)
Q Consensus        52 KKgKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAER   94 (503)
                      +++|||++||++||+|||++|.++|++|+++++++|++||+||
T Consensus         5 ~k~kms~sRK~~LKslmL~~A~~~Le~E~~~k~~eK~~~L~Er   47 (47)
T 1a2x_B            5 KRNRAITARRQHLKSVMLQIAATELEKEEGRREAEKQNYLAEH   47 (47)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4567999999999999999999999999999999999999986

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=90.52  E-value=7.8  Score=33.36  Aligned_cols=50  Identities=20%  Similarity=0.235  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCC
Q psy9560         106 EDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKF  155 (503)
Q Consensus       106 edELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKF  155 (503)
                      ..+|..++++|..++...++...+|...-++...+|.+|+..|.|+-...
T Consensus        78 k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~l  127 (129)
T 2fxo_A           78 KIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTL  127 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            36789999999999999999999999999999999999999999997643

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=85.54  E-value=7.9  Score=35.60  Aligned_cols=78  Identities=9%  Similarity=0.020  Sum_probs=50.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy9560          54 GFMTPERKKKLRLLLRKKAAEELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDRE  133 (503)
Q Consensus        54 gKMT~eRKkkLKSLLLqKAaEELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~K  133 (503)
                      -.||++-+.+|+.++ ++...+...-+++....|..+-+...     -+..|.+.++++.+++.+.=.+|..+|.++..+
T Consensus        66 LnLT~EQq~ql~~I~-~e~r~~~~~Lr~ql~akr~EL~aL~~-----a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~e  139 (175)
T 3lay_A           66 SPLTTEQQATAQKIY-DDYYTQTSALRQQLISKRYEYNALLT-----ASSPDTAKINAVAKEMESLGQKLDEQRVKRDVA  139 (175)
T ss_dssp             --CCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHT-----SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            358999999988864 44443333222333333333322222     255678999999999999999999999888887


Q ss_pred             Hhhh
Q psy9560         134 IMLK  137 (503)
Q Consensus       134 VkKQ  137 (503)
                      +.+.
T Consensus       140 m~Ke  143 (175)
T 3lay_A          140 MAQA  143 (175)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            7654

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=84.03  E-value=13  Score=30.42  Aligned_cols=60  Identities=12%  Similarity=0.189  Sum_probs=46.7

Q ss_pred             hhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560          92 DERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG  153 (503)
Q Consensus        92 AERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG  153 (503)
                      ...|| . --+.++......+..++...|..+..+..+|...+...+.+|..|+.++.||.+
T Consensus        47 g~~CP-v-Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~  106 (112)
T 1l8d_A           47 KGKCP-V-CGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKRLTP  106 (112)
T ss_dssp             SEECT-T-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCCC-C-CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45794 3 234456666677888899999999999999999999999999999999885543

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=81.05  E-value=2.5  Score=42.63  Aligned_cols=56  Identities=21%  Similarity=0.338  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhCCC-----CCCcccc
Q psy9560         107 DEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRGKF-----VRPILKK  162 (503)
Q Consensus       107 dELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRGKF-----KKPaLKK  162 (503)
                      ..|++.+.+|-+.|..++.+.-+|..++.+.+.....|.++|+||+|.+     +||.+.+
T Consensus        13 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~   73 (403)
T 4etp_A           13 AALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKN   73 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCc
Confidence            5688889999999999999999999999999999999999999999985     5887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	503
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	82.82

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.82  E-value=7.8  Score=29.11  Aligned_cols=77  Identities=16%  Similarity=0.138  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHHHHHHHhhC
Q psy9560          74 EELKREQERRALERKRVIDERCGEPKDTDDMAEDEIGDLCQEYWQRIYNLEAIKYELDREIMLKDFEITELGKQVNDLRG  153 (503)
Q Consensus        74 EELEKEKEqKeEEKKKiLAERcpPPLnIDGLSedELQEkCKELHdRIdkLEEEKYDLE~KVkKQDyEInELniKVnDLRG  153 (503)
                      ...++......-+.=..|...+|...+-..+|-..+-..+.   +.|..|..+--.+...+.....+...|+.+++.|+|
T Consensus        11 n~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~---~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~g   87 (88)
T d1nkpa_          11 NVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKAT---AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG   87 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33443333344444445666664222223366655433333   334444555555555666666778889999999988