Psyllid ID: psy9579

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------

MQSMKYRNTPINFKNLNKEKINILENNKKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAFLK

ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHcccHHHHHHccccccccccccccccccccccEEEEccccEEEEEEEcccccccccccEEEEEHHHHHHHcccccccEEEEEEEEccccccccHHHHHHHccccccccccccEEEEEEcccccccccccccccccccHHHHHHHcccEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccEEEEccccccccccccccEEEEEcccccccccccccEEEcccccccccccEEEEcccccHHHHHHccccccccccccEEEEEccccccccccEEEEEEccccHHHHHccccccEEEcccccccccccccccHHHHHHHHccccccEEEccccHHHHHHHHHHHccccccccEEEEcccccccccccccccccccccccEEcccccccccccccccEEEEEccHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHHcccccEEEEccccccccccccHHHHHHHHHHHHHHHHcc

ccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHccccHHHcccEEEcccEEEccccccHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEcccccHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHccccHHHHHHHHccccccccccccEEEccccccccccccccEEEEEEEccccEEEEccEEEEEEEEHHHccccccccEEEEEEEEccHHHccccHHHHHHHHHcccccccccEEEEEEEcccccccccccccccccccHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEcccccccccccccHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccEccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccEEEEccccccccEEccEEEEEccccHHHHHccccccEEEHHHcccccccEEEEEccccHHHHHHHHHcccccccccEEEEEEEccccccccEEEHHHHHHcHHHHHHHHHHHHEEcccccccccccccHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHHHHccccccEEEEccHHHHccHHHHccHHHHHccccccccccHHHHccHHHEEEEEEEcccHHHHHHHHHHHcccccEEEEEEEEcccccHHHHHHHHHHcccccEEEEEcccccccccHHEccHHHHHHcccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHcc

mqsmkyrntpinfknlnKEKINILENNKKFKLISLIDNYRRLgvyfanldplKQKIKTINLEYKLnikfydfnesdmdsviNVNNIFFGVKKTTLRNLLKFLKNTYtsnigsefmYINNLEEVEWIQEQLEstqatpnfskekKKNILFLLTAAEEFEHYLHNRyvgqkrfslegsESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILgkkpkelfdefedknsenllsgdvkyhqgfssnintpggvihlslafnpshleiinpvvegsakarmerrddkfgtqvlpvlvhgdaafsgqgvvmetlnfskidsyntggtIHIIInnqigfttspndlrstlyctdigkiieapvfhvngddpesVILVTKIAVEYRMKFKKDCIINIICfrklghneqdtpsltqplmykkifkhpgirelysNKLKIQKILTKNESENMIKEFNDMINSGKSIvnsipsnfiydksksewapflkngyidncntsISLEKLKFLSKKitnipkgfkLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYgvrlsgqdsgrgtfshRHAILynqdyqyseketdistyiplhnvsknqaKFHIINSILSEEAILgfeygfstaspntLTIWEAQFGDFANGAQVIIDQFISsseekwgrisgltlmlphgyegqgpehsSARLERFLQLCANnniqivqptsaSQIFHLLRYQIirpirkpliiitpksllrkKEASSTLMDLATGKFNKIINeiddiidpkkIKRIIACSGKIYYDLFNfrkkknkndVVIIRIEqlypfpneDFLKILKKFRYFEKLIwaqdepknqgawpQIKENILKYLNSTQKLIYVgrscsaspasgyyskhCKEQITLLNNAFLK

mqsmkyrntpinfknlnkEKINILENNKKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLEStqatpnfskekKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEApvfhvngddpESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKhpgirelysnkLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKitnipkgfklhkLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIineiddiidpkkIKRIIACSGKIYYDLfnfrkkknkndVVIIRIeqlypfpneDFLKILKKFRYFEKLIWaqdepknqgawPQIKENILKYLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAFLK

MQSMKYRNTPinfknlnkekinilennkkfkliSLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYntggtihiiinnqigftTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQiirpirkpliiitpkSLLRKKEASSTLMDLATGKFNkiineiddiidpkkikriiACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAFLK

**********INFKNLNKEKINILENNKKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQL**************KNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEF*******LLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEG**********DKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYE*********RLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNA***

*****************************FKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQA***FSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKS****************************NCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAFLK

********TPINFKNLNKEKINILENNKKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGY********SARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAFLK

*****YRNTP**************ENNKKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNS**LLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAFLK

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		887	2.2.26 [Sep-21-2011]
Q59106		950	2-oxoglutarate dehydrogen	yes	N/A	0.960	0.896	0.577	0.0
P20707		943	2-oxoglutarate dehydrogen	yes	N/A	0.968	0.910	0.502	0.0
P0AFG3		933	2-oxoglutarate dehydrogen	N/A	N/A	0.948	0.901	0.509	0.0
P0AFG4		933	2-oxoglutarate dehydrogen	yes	N/A	0.948	0.901	0.509	0.0
P0AFG5		933	2-oxoglutarate dehydrogen	N/A	N/A	0.948	0.901	0.509	0.0
P45303		935	2-oxoglutarate dehydrogen	yes	N/A	0.980	0.930	0.477	0.0
P51056		934	2-oxoglutarate dehydrogen	yes	N/A	0.943	0.896	0.489	0.0
P57388		909	2-oxoglutarate dehydrogen	yes	N/A	0.942	0.919	0.492	0.0
Q8K9N3		923	2-oxoglutarate dehydrogen	yes	N/A	0.959	0.921	0.484	0.0
Q8F6S7		920	2-oxoglutarate dehydrogen	yes	N/A	0.936	0.903	0.461	0.0

>sp\|Q59106\|ODO1_CUPNH 2-oxoglutarate dehydrogenase E1 component OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=odhA PE=3 SV=2	Back alignment and function desciption

 Score = 1073 bits (2775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/861 (57%), Positives = 656/861 (76%), Gaps = 9/861 (1%)

Query: 28  KKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNIF 87
           K+     LI  YR +G ++A+LDPLK++ +    +  L+  FY F+E+D+D V N +N +
Sbjct: 90  KRVAATQLIAAYRNIGSHWADLDPLKRQERPPLPD--LDPAFYGFSEADLDIVFNASNTY 147

Query: 88  FGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNI 147
           FG +  +LR LL  L+ TY   IG EFMY+++  +  W QE+LE+T++ P F+ EKKK+I
Sbjct: 148 FGKESMSLRELLNNLRETYCGTIGFEFMYVSDQAQKRWWQERLETTRSKPVFTLEKKKHI 207

Query: 148 LFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGR 207
           L  LTAAE  E +LH +YVGQKRFSLEG ESFI +++E+IQH+G +G++EIVIGMAHRGR
Sbjct: 208 LDRLTAAEGLERFLHTKYVGQKRFSLEGGESFIAAMDELIQHAGSKGVQEIVIGMAHRGR 267

Query: 208 LNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHL 267
           LNVLVN LGK P +LF EFE K+ ++L +GDVKYH+GFSS+++T GG +HLSLAFNPSHL
Sbjct: 268 LNVLVNTLGKMPADLFAEFEGKHVDDLPAGDVKYHKGFSSDVSTEGGPVHLSLAFNPSHL 327

Query: 268 EIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGT 327
           EI+NPVVEGSAKAR ERR +    +VLPV VHGDAAF+GQGVVMETLN ++   Y TGG+
Sbjct: 328 EIVNPVVEGSAKARQERRGEVGHKEVLPVQVHGDAAFAGQGVVMETLNLAQTRGYGTGGS 387

Query: 328 IHIIINNQIGFTTS-PNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMK 386
           +HI+INNQIGFTTS P D RSTLYCTD+ K+IEAPV HVNGDDPE+V+   ++AV++RM+
Sbjct: 388 MHIVINNQIGFTTSDPRDARSTLYCTDVVKMIEAPVLHVNGDDPEAVVYAMQLAVDFRME 447

Query: 387 FKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESE 446
           FKKD +++IICFRKLGHNEQDTP++TQPLMYKKI +HPG R+LY++KL  Q ++     +
Sbjct: 448 FKKDVVVDIICFRKLGHNEQDTPAVTQPLMYKKIAQHPGTRKLYADKLAAQNLVPAEFGD 507

Query: 447 NMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKK 506
             +K +   +++GK   + + SNF  +K   +W PFL   + D  +T++ + +LK L+++
Sbjct: 508 EKVKAYRAAMDAGKHTADPVLSNF-KNKFAVDWMPFLNRKWTDAADTAVPVTELKRLAER 566

Query: 507 ITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGR 566
           IT  P+  KLH LV+K++KDR  MG G   +DWGM EHLA+ASLV SGY VR++GQD+GR
Sbjct: 567 ITTTPETLKLHPLVEKVVKDRANMGRGDQPLDWGMGEHLAFASLVSSGYPVRITGQDAGR 626

Query: 567 GTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFS 626
           GTF+HRHA+L++Q    + +  D  +Y+PL NVS+NQA F +I+S+LSEEA+LGFEYG+S
Sbjct: 627 GTFTHRHAVLHDQ----ARERWDAGSYVPLQNVSENQAPFTVIDSVLSEEAVLGFEYGYS 682

Query: 627 TASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSA 686
            A PN L IWEAQFGDF NGAQV+IDQFISS E KWGR SGLTLMLPHGYEGQGPEHSSA
Sbjct: 683 AAEPNALVIWEAQFGDFVNGAQVVIDQFISSGEVKWGRASGLTLMLPHGYEGQGPEHSSA 742

Query: 687 RLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLM 746
           R+ERFLQLCA++N+Q+ QPT+ +QIFHLLR Q+IR  RKPL+I+TPKSLLR K+A S L 
Sbjct: 743 RIERFLQLCADHNMQVCQPTTPAQIFHLLRRQMIRLFRKPLVIMTPKSLLRNKDAVSPLS 802

Query: 747 DLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPF 806
           DLA G F  +I + ++ ++  K+KR+I CSGK+YYDL N RK++  ND  +IR+EQLYPF
Sbjct: 803 DLAKGHFETVIPDHEE-LNASKVKRVIMCSGKVYYDLVNTRKEREANDTAVIRLEQLYPF 861

Query: 807 PNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPA 866
           P++     LKK+    +++W QDEP+NQGAW  ++  I++ +   QKL Y GR  SASPA
Sbjct: 862 PHKAVAAELKKYPNATEIVWCQDEPQNQGAWFFVQHYIMENMTDGQKLGYAGRPASASPA 921

Query: 867 SGYYSKHCKEQITLLNNAFLK 887
            GYY+KH ++Q  LL  AF K
Sbjct: 922 VGYYAKHNEQQKALLEAAFAK 942

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).
Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 2

>sp\|P20707\|ODO1_AZOVI 2-oxoglutarate dehydrogenase E1 component OS=Azotobacter vinelandii GN=sucA PE=3 SV=1	Back alignment and function description

>sp\|P0AFG3\|ODO1_ECOLI 2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli (strain K12) GN=sucA PE=1 SV=1	Back alignment and function description

>sp\|P0AFG4\|ODO1_ECOL6 2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=sucA PE=3 SV=1	Back alignment and function description

>sp\|P0AFG5\|ODO1_ECO57 2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O157:H7 GN=sucA PE=3 SV=1	Back alignment and function description

>sp\|P45303\|ODO1_HAEIN 2-oxoglutarate dehydrogenase E1 component OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=sucA PE=3 SV=1	Back alignment and function description

>sp\|P51056\|ODO1_COXBU 2-oxoglutarate dehydrogenase E1 component OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=sucA PE=3 SV=3	Back alignment and function description

>sp\|P57388\|ODO1_BUCAI 2-oxoglutarate dehydrogenase E1 component OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=sucA PE=3 SV=1	Back alignment and function description

>sp\|Q8K9N3\|ODO1_BUCAP 2-oxoglutarate dehydrogenase E1 component OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=sucA PE=3 SV=1	Back alignment and function description

>sp\|Q8F6S7\|ODO1_LEPIN 2-oxoglutarate dehydrogenase E1 component OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=sucA PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		887
300312273		954	2-oxoglutarate dehydrogenase oxidoreduct	0.961	0.894	0.626	0.0
409406695		954	2-oxoglutarate dehydrogenase oxidoreduct	0.961	0.894	0.624	0.0
415949074		954	2-oxoglutarate dehydrogenase, E1 compone	0.961	0.894	0.623	0.0
399017641		954	2-oxoglutarate dehydrogenase, E1 compone	0.960	0.893	0.628	0.0
340786942		954	2-oxoglutarate dehydrogenase E1 [Collimo	0.961	0.894	0.626	0.0
398836175		954	2-oxoglutarate dehydrogenase, E1 compone	0.963	0.896	0.617	0.0
395763312		954	2-oxoglutarate dehydrogenase E1 componen	0.961	0.894	0.619	0.0
329903480		951	2-oxoglutarate dehydrogenase E1 componen	0.969	0.904	0.623	0.0
445498355		951	2-oxoglutarate dehydrogenase E1 componen	0.961	0.896	0.612	0.0
134094978		952	2-oxoglutarate dehydrogenase E1 [Hermini	0.960	0.894	0.611	0.0

>gi\|300312273\|ref\|YP_003776365.1\| 2-oxoglutarate dehydrogenase oxidoreductase [Herbaspirillum seropedicae SmR1] gi\|300075058\|gb\|ADJ64457.1\| 2-oxoglutarate dehydrogenase oxidoreductase (E1 component) protein [Herbaspirillum seropedicae SmR1]	Back alignment and taxonomy information

 Score = 1181 bits (3055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/861 (62%), Positives = 687/861 (79%), Gaps = 8/861 (0%)

Query: 28  KKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNIF 87
           K+  +  LI  YR LG  FANLDPL Q+ +  N+  +L+  FY F ++DMD V N+NN +
Sbjct: 93  KRVAVTQLIAGYRDLGSRFANLDPL-QRQERPNIP-ELDPSFYGFTDADMDIVFNINNTY 150

Query: 88  FGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNI 147
           FG +  +LR+LL+ L++TYT +IG+EF YI+++ EV W++E+LE T+A P+FS EKKK+I
Sbjct: 151 FGPETASLRDLLQMLRDTYTRSIGAEFTYISDMAEVRWLEERLEPTRAVPSFSSEKKKHI 210

Query: 148 LFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGR 207
           L  LTAAE  E YLH +YVGQKRFSLEG ESFI SL+E IQ +G++G++EIVIGMAHRGR
Sbjct: 211 LERLTAAEGLERYLHTKYVGQKRFSLEGGESFIASLDETIQRAGEKGVQEIVIGMAHRGR 270

Query: 208 LNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHL 267
           LNVLVNILGK P+ELF EFE +++++L +GDVKYHQGFSS+++TPGG +HLSLAFNPSHL
Sbjct: 271 LNVLVNILGKTPQELFSEFEGRHADDLPAGDVKYHQGFSSDVSTPGGPVHLSLAFNPSHL 330

Query: 268 EIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGT 327
           EI+NPVVEGS KARM+RR DK G+QVLP+LVHGDAAF+GQGVVMETLN ++   Y TGGT
Sbjct: 331 EIVNPVVEGSVKARMDRRGDKDGSQVLPILVHGDAAFAGQGVVMETLNLAQTRGYGTGGT 390

Query: 328 IHIIINNQIGFTTS-PNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMK 386
           +HI+INNQIGFTTS P D RSTLYC+D+ K+IEAPV HVNGDDPE+V+  T+IAV+YRMK
Sbjct: 391 VHIVINNQIGFTTSDPRDSRSTLYCSDVVKMIEAPVLHVNGDDPEAVVFATQIAVDYRMK 450

Query: 387 FKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESE 446
           FKKD +++IICFRKLGHNEQDTP+LTQPLMYKKI +HPG R+LY++KL  Q+ +  +  E
Sbjct: 451 FKKDIVVDIICFRKLGHNEQDTPALTQPLMYKKIAQHPGTRKLYADKLVTQQTIPADGGE 510

Query: 447 NMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKK 506
            ++K +   +++GK  ++ + +NF   K   +W PFL   + D   T++ + +LK L+ K
Sbjct: 511 ELVKAYRAAMDAGKHAIDPVLTNF-KSKYAVDWLPFLNRKWTDAAETAVPMAELKRLAAK 569

Query: 507 ITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGR 566
           IT +P+GFK+H LV+K+L DR  MG G++N+DWGM EHLAYASLV SGY VRL+GQD+GR
Sbjct: 570 ITTVPEGFKVHSLVEKVLNDRAAMGRGEMNLDWGMGEHLAYASLVSSGYAVRLTGQDAGR 629

Query: 567 GTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFS 626
           GTF+HRHA+L++Q+     +  D  T+IPL NV++NQ+ F +I+S+LSEEA+L FEYG+S
Sbjct: 630 GTFTHRHAVLHDQN----RERWDAGTFIPLQNVAENQSTFTVIDSVLSEEAVLAFEYGYS 685

Query: 627 TASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSA 686
           TA PNTLTIWEAQFGDFANGAQV++DQFISS E KWGR SGL  MLPHGYEGQGPEHSSA
Sbjct: 686 TAEPNTLTIWEAQFGDFANGAQVVMDQFISSGEVKWGRASGLVQMLPHGYEGQGPEHSSA 745

Query: 687 RLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLM 746
           R+ER+LQLCA+NN+Q+VQPT+A+QIFHLLR Q+IR  RKPLII+TPKSLLR K+A S L 
Sbjct: 746 RIERYLQLCADNNMQVVQPTTAAQIFHLLRRQMIRLFRKPLIIMTPKSLLRNKDAGSPLS 805

Query: 747 DLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPF 806
           DLA G F  +I E+D+ ID KK+KRI+ACSGK+YYDL N RK++ + D  IIR+EQLYPF
Sbjct: 806 DLAKGSFQTVIPEVDETIDAKKVKRIVACSGKVYYDLVNARKERGQTDTAIIRVEQLYPF 865

Query: 807 PNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPA 866
           P++ F   LK+F  F +L+WAQDEP+NQGAW QI+ NI + L+  QKL Y GR  SASPA
Sbjct: 866 PHKAFAAALKQFPNFNELVWAQDEPQNQGAWLQIQHNIFENLSEGQKLAYAGRPASASPA 925

Query: 867 SGYYSKHCKEQITLLNNAFLK 887
            GYY KH  +Q  L+  AF K
Sbjct: 926 VGYYDKHYAQQKALIETAFAK 946

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi\|409406695\|ref\|ZP_11255157.1\| 2-oxoglutarate dehydrogenase oxidoreductase [Herbaspirillum sp. GW103] gi\|386435244\|gb\|EIJ48069.1\| 2-oxoglutarate dehydrogenase oxidoreductase [Herbaspirillum sp. GW103]	Back alignment and taxonomy information

>gi\|415949074\|ref\|ZP_11556835.1\| 2-oxoglutarate dehydrogenase, E1 component [Herbaspirillum frisingense GSF30] gi\|407757801\|gb\|EKF67720.1\| 2-oxoglutarate dehydrogenase, E1 component [Herbaspirillum frisingense GSF30]	Back alignment and taxonomy information

>gi\|399017641\|ref\|ZP_10719831.1\| 2-oxoglutarate dehydrogenase, E1 component [Herbaspirillum sp. CF444] gi\|398102866\|gb\|EJL93042.1\| 2-oxoglutarate dehydrogenase, E1 component [Herbaspirillum sp. CF444]	Back alignment and taxonomy information

>gi\|340786942\|ref\|YP_004752407.1\| 2-oxoglutarate dehydrogenase E1 [Collimonas fungivorans Ter331] gi\|340552209\|gb\|AEK61584.1\| 2-oxoglutarate dehydrogenase E1 component [Collimonas fungivorans Ter331]	Back alignment and taxonomy information

>gi\|398836175\|ref\|ZP_10593521.1\| 2-oxoglutarate dehydrogenase, E1 component [Herbaspirillum sp. YR522] gi\|398213179\|gb\|EJM99773.1\| 2-oxoglutarate dehydrogenase, E1 component [Herbaspirillum sp. YR522]	Back alignment and taxonomy information

>gi\|395763312\|ref\|ZP_10443981.1\| 2-oxoglutarate dehydrogenase E1 component [Janthinobacterium lividum PAMC 25724]	Back alignment and taxonomy information

>gi\|329903480\|ref\|ZP_08273499.1\| 2-oxoglutarate dehydrogenase E1 component [Oxalobacteraceae bacterium IMCC9480] gi\|327548355\|gb\|EGF33040.1\| 2-oxoglutarate dehydrogenase E1 component [Oxalobacteraceae bacterium IMCC9480]	Back alignment and taxonomy information

>gi\|445498355\|ref\|ZP_21465210.1\| 2-oxoglutarate dehydrogenase E1 component SucA [Janthinobacterium sp. HH01] gi\|444788350\|gb\|ELX09898.1\| 2-oxoglutarate dehydrogenase E1 component SucA [Janthinobacterium sp. HH01]	Back alignment and taxonomy information

>gi\|134094978\|ref\|YP_001100053.1\| 2-oxoglutarate dehydrogenase E1 [Herminiimonas arsenicoxydans] gi\|133738881\|emb\|CAL61928.1\| 2-oxoglutarate dehydrogenase E1 component (Alpha-ketoglutarate dehydrogenase) [Herminiimonas arsenicoxydans]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		887
UNIPROTKB\|P0AFG3		933	sucA "subunit of E1(0) compone	0.936	0.890	0.481	2.3e-213
UNIPROTKB\|Q9KQB3		936	VC_2087 "2-oxoglutarate dehydr	0.942	0.893	0.462	2.8e-208
TIGR_CMR\|VC_2087		936	VC_2087 "2-oxoglutarate dehydr	0.942	0.893	0.462	2.8e-208
TIGR_CMR\|CPS_2219		934	CPS_2219 "2-oxoglutarate dehyd	0.940	0.892	0.467	3.6e-208
TIGR_CMR\|SO_1930		939	SO_1930 "2-oxoglutarate dehydr	0.941	0.889	0.455	1.4e-204
TIGR_CMR\|CBU_1399		934	CBU_1399 "2-oxoglutarate dehyd	0.942	0.895	0.454	1.7e-194
TIGR_CMR\|SPO_0344		985	SPO_0344 "2-oxoglutarate dehyd	0.942	0.848	0.427	5e-179
TIGR_CMR\|ECH_0832		912	ECH_0832 "2-oxoglutarate dehyd	0.928	0.903	0.422	1e-171
TIGR_CMR\|APH_0863		905	APH_0863 "2-oxoglutarate dehyd	0.862	0.845	0.439	8.7e-166
TIGR_CMR\|GSU_2449		894	GSU_2449 "2-oxoglutarate dehyd	0.888	0.881	0.414	1.3e-164

UNIPROTKB\|P0AFG3 sucA "subunit of E1(0) component of 2-oxoglutarate dehydrogenase" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

 Score = 2062 (730.9 bits), Expect = 2.3e-213, P = 2.3e-213
 Identities = 411/854 (48%), Positives = 563/854 (65%)

Query:    35 LIDNYRRLGVYFANLDPLK--QKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKK 92
             LI+ YR  G   ANLDPL   Q+ K  +L+      F+D  E+D     NV +   G + 
Sbjct:    95 LINAYRFRGHQHANLDPLGLWQQDKVADLDPS----FHDLTEADFQETFNVGSFASGKET 150

Query:    93 TTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLT 152
               L  LL+ LK TY   IG+E+M+I + EE  WIQ+++ES +AT  F+ E+KK  L  LT
Sbjct:   151 MKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIESGRAT--FNSEEKKRFLSELT 208

Query:   153 AAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLV 212
             AAE  E YL  ++ G KRFSLEG ++ I  L E+I+H+G  G RE+V+GMAHRGRLNVLV
Sbjct:   209 AAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLV 268

Query:   213 NILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINP 272
             N+LGKKP++LFDEF  K+ E+L +GDVKYH GFSS+  T GG++HL+LAFNPSHLEI++P
Sbjct:   269 NVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSP 328

Query:   273 VVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYXXXXXXXXXX 332
             VV GS +AR++R D+    +VLP+ +HGDAA +GQGVV ETLN SK   Y          
Sbjct:   329 VVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVI 388

Query:   333 XXXXXXXTS-PNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDC 391
                    TS P D RST YCTDIGK+++AP+FHVN DDPE+V  VT++A+++R  FK+D 
Sbjct:   389 NNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDV 448

Query:   392 IINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKE 451
              I+++C+R+ GHNE D PS TQPLMY+KI KHP  R++Y++KL+ +K+ T  ++  M+  
Sbjct:   449 FIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL 508

Query:   452 FNDMINSGKSIVNSI-PSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNI 510
             + D +++G  +V    P N         W+P+L + + +     + +++L+ L+K+I+ +
Sbjct:   509 YRDALDAGDCVVAEWRPMNM----HSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTV 564

Query:   511 PKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFS 570
             P+  ++   V KI  DR  M  G+   DWG AE+LAYA+LV  G  VRLSG+DSGRGTF 
Sbjct:   565 PEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFF 624

Query:   571 HRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASP 630
             HRHA+++NQ        ++ STY PL ++   Q  F + +S+LSEEA+L FEYG++TA P
Sbjct:   625 HRHAVIHNQ--------SNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEP 676

Query:   631 NTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLER 690
              TLTIWEAQFGDFANGAQV+IDQFISS E+KWGR+ GL ++LPHGYEGQGPEHSSARLER
Sbjct:   677 RTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLER 736

Query:   691 FLQLCANNNIQIVQPTSASQIFHLLRYQXXXXXXXXXXXXXXXSLLRKKEASSTLMDLAT 750
             +LQLCA  N+Q+  P++ +Q++H+LR Q               SLLR   A S+L +LA 
Sbjct:   737 YLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAN 796

Query:   751 GKFNXXXXXXXXXXXXXXXXXXXACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNED 810
             G F                     CSGK+YYDL   R+K N++DV I+RIEQLYPFP++ 
Sbjct:   797 GTF-LPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKA 855

Query:   811 FLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYY 870
               ++L++F + +  +W Q+EP NQGAW   + +  + +     L Y GR  SASPA GY 
Sbjct:   856 MQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGYM 915

Query:   871 SKHCKEQITLLNNA 884
             S H K+Q  L+N+A
Sbjct:   916 SVHQKQQQDLVNDA 929

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006096 "glycolysis" evidence=IEA

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA;IDA

UNIPROTKB\|Q9KQB3 VC_2087 "2-oxoglutarate dehydrogenase, E1 component" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_2087 VC_2087 "2-oxoglutarate dehydrogenase, E1 component" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_2219 CPS_2219 "2-oxoglutarate dehydrogenase, E1 component" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_1930 SO_1930 "2-oxoglutarate dehydrogenase, E1 component" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

TIGR_CMR\|CBU_1399 CBU_1399 "2-oxoglutarate dehydrogenase, E1 component" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_0344 SPO_0344 "2-oxoglutarate dehydrogenase, E1 component" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|ECH_0832 ECH_0832 "2-oxoglutarate dehydrogenase, E1 component" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]	Back alignment and assigned GO terms

TIGR_CMR\|APH_0863 APH_0863 "2-oxoglutarate dehydrogenase, E1 component" [Anaplasma phagocytophilum HZ (taxid:212042)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_2449 GSU_2449 "2-oxoglutarate dehydrogenase, E1 component" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
C1ELG5	ODO1_BACC3	1, ., 2, ., 4, ., 2	0.3868	0.9673	0.8984	yes	N/A
A5VSQ0	ODO1_BRUO2	1, ., 2, ., 4, ., 2	0.4448	0.9447	0.8346	yes	N/A
Q57AX5	ODO1_BRUAB	1, ., 2, ., 4, ., 2	0.4460	0.9425	0.8326	yes	N/A
Q4UKI8	ODO1_RICFE	1, ., 2, ., 4, ., 2	0.4528	0.9379	0.8515	yes	N/A
Q1B4V6	KGD_MYCSS	4, ., 1, ., 1, ., 7, 1	0.4065	0.9706	0.6784	yes	N/A
Q2YLS2	ODO1_BRUA2	1, ., 2, ., 4, ., 2	0.4460	0.9425	0.8326	yes	N/A
Q89AJ7	ODO1_BUCBP	1, ., 2, ., 4, ., 2	0.4709	0.9323	0.9028	yes	N/A
Q59106	ODO1_CUPNH	1, ., 2, ., 4, ., 2	0.5772	0.9605	0.8968	yes	N/A
B7HH19	ODO1_BACC4	1, ., 2, ., 4, ., 2	0.3868	0.9673	0.8984	yes	N/A
A1TDK2	KGD_MYCVP	4, ., 1, ., 1, ., 7, 1	0.4076	0.9706	0.6926	yes	N/A
A9M8Q9	ODO1_BRUC2	1, ., 2, ., 4, ., 2	0.4459	0.9447	0.8346	yes	N/A
A7GMD4	ODO1_BACCN	1, ., 2, ., 4, ., 2	0.3986	0.9481	0.8778	yes	N/A
A5U1U6	KGD_MYCTA	4, ., 1, ., 1, ., 7, 1	0.4031	0.9639	0.6945	yes	N/A
Q81GF2	ODO1_BACCR	1, ., 2, ., 4, ., 2	0.3868	0.9673	0.8984	yes	N/A
P57388	ODO1_BUCAI	1, ., 2, ., 4, ., 2	0.4925	0.9425	0.9196	yes	N/A
A6WXF0	ODO1_OCHA4	1, ., 2, ., 4, ., 2	0.4481	0.9447	0.8371	yes	N/A
A0R2B1	KGD_MYCS2	4, ., 1, ., 1, ., 7, 1	0.4051	0.9695	0.7008	yes	N/A
A0PVU7	KGD_MYCUA	4, ., 1, ., 1, ., 7, 1	0.3955	0.9684	0.6938	yes	N/A
B2S877	ODO1_BRUA1	1, ., 2, ., 4, ., 2	0.4460	0.9425	0.8326	yes	N/A
P0AFG4	ODO1_ECOL6	1, ., 2, ., 4, ., 2	0.5092	0.9481	0.9013	yes	N/A
P0AFG5	ODO1_ECO57	1, ., 2, ., 4, ., 2	0.5092	0.9481	0.9013	N/A	N/A
P0AFG3	ODO1_ECOLI	1, ., 2, ., 4, ., 2	0.5092	0.9481	0.9013	N/A	N/A
Q92J42	ODO1_RICCN	1, ., 2, ., 4, ., 2	0.4464	0.9458	0.9040	yes	N/A
Q8NRC3	ODO12_CORGL	1, ., 2, ., 4, ., 2	0.4169	0.9458	0.6871	yes	N/A
Q54JE4	ODO1_DICDI	1, ., 2, ., 4, ., 2	0.4179	0.9729	0.8519	yes	N/A
B0CIS7	ODO1_BRUSI	1, ., 2, ., 4, ., 2	0.4459	0.9447	0.8346	yes	N/A
Q8FYF7	ODO1_BRUSU	1, ., 2, ., 4, ., 2	0.4459	0.9447	0.8346	yes	N/A
C0RFG8	ODO1_BRUMB	1, ., 2, ., 4, ., 2	0.4448	0.9447	0.8346	yes	N/A
A1KI36	KGD_MYCBP	4, ., 1, ., 1, ., 7, 1	0.4042	0.9639	0.6945	yes	N/A
Q9ZDY3	ODO1_RICPR	1, ., 2, ., 4, ., 2	0.4520	0.9458	0.8963	yes	N/A
C3P487	ODO1_BACAA	1, ., 2, ., 4, ., 2	0.3879	0.9673	0.8984	yes	N/A
Q68XI7	ODO1_RICTY	1, ., 2, ., 4, ., 2	0.4543	0.9312	0.8853	yes	N/A
A1UK81	KGD_MYCSK	4, ., 1, ., 1, ., 7, 1	0.4065	0.9706	0.6784	yes	N/A
Q1RHI4	ODO1_RICBR	1, ., 2, ., 4, ., 2	0.4409	0.9425	0.9018	yes	N/A
O50463	KGD_MYCTU	4, ., 1, ., 1, ., 7, 1	0.4031	0.9639	0.6945	yes	N/A
C3LAU3	ODO1_BACAC	1, ., 2, ., 4, ., 2	0.3879	0.9673	0.8984	yes	N/A
Q8YJE4	ODO1_BRUME	1, ., 2, ., 4, ., 2	0.4448	0.9447	0.8346	yes	N/A
P20707	ODO1_AZOVI	1, ., 2, ., 4, ., 2	0.5022	0.9684	0.9109	yes	N/A
P45303	ODO1_HAEIN	1, ., 2, ., 4, ., 2	0.4770	0.9808	0.9304	yes	N/A
Q7U0A6	KGD_MYCBO	4, ., 1, ., 1, ., 7, 1	0.4042	0.9639	0.6945	yes	N/A
B7I0H2	ODO1_BACC7	1, ., 2, ., 4, ., 2	0.3868	0.9673	0.8984	yes	N/A
Q8K9N3	ODO1_BUCAP	1, ., 2, ., 4, ., 2	0.4847	0.9594	0.9219	yes	N/A
Q81TK1	ODO1_BACAN	1, ., 2, ., 4, ., 2	0.3879	0.9673	0.8984	yes	N/A
Q72PJ7	ODO1_LEPIC	1, ., 2, ., 4, ., 2	0.4615	0.9368	0.9032	yes	N/A
P51056	ODO1_COXBU	1, ., 2, ., 4, ., 2	0.4894	0.9436	0.8961	yes	N/A
B9IU58	ODO1_BACCQ	1, ., 2, ., 4, ., 2	0.3868	0.9673	0.8984	yes	N/A
A3Q3N5	KGD_MYCSJ	4, ., 1, ., 1, ., 7, 1	0.4054	0.9706	0.6811	yes	N/A
Q9CC97	KGD_MYCLE	4, ., 1, ., 1, ., 7, 1	0.4053	0.9616	0.6890	yes	N/A
Q8F6S7	ODO1_LEPIN	1, ., 2, ., 4, ., 2	0.4615	0.9368	0.9032	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.2.4	0.963
4th Layer	1.2.4.2	0.946

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		887
PRK09404		924	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 co	0.0
COG0567		906	COG0567, SucA, 2-oxoglutarate dehydrogenase comple	0.0
PRK12270		1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.0
TIGR00239		929	TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenas	0.0
cd02016		265	cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate	1e-164
pfam02779		172	pfam02779, Transket_pyr, Transketolase, pyrimidine	4e-49
pfam00676		303	pfam00676, E1_dh, Dehydrogenase E1 component	1e-39
smart00861		136	smart00861, Transket_pyr, Transketolase, pyrimidin	2e-28
TIGR03182		315	TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E	5e-05
cd02000		293	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph	2e-04
COG1071		358	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena	8e-04

>gnl\|CDD\|236499 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	Back alignment and domain information

 Score = 1482 bits (3839), Expect = 0.0
 Identities = 492/877 (56%), Positives = 649/877 (74%), Gaps = 20/877 (2%)

Query: 13  FKNLNKEKINILENNKK-FKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYD 71
           F+ L K        +    K++ LI+ YR  G   ANLDPL    K  ++  +L+  FY 
Sbjct: 63  FRRLAKPARVSSAVSDPQVKVLQLINAYRFRGHLAANLDPLG-LWKRPDVP-ELDPAFYG 120

Query: 72  FNESDMDSVINVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLE 131
             E+D+D   N  ++  G +  TLR +++ LK TY  +IG E+M+I++ EE  W+Q+++E
Sbjct: 121 LTEADLDRTFNTGSLALGKETATLREIIEALKKTYCGSIGVEYMHISDPEERRWLQQRIE 180

Query: 132 STQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSG 191
           S +   +FS E+KK IL  LTAAE FE +LH ++VGQKRFSLEG ES I  L+EII+ +G
Sbjct: 181 SGRP--SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAG 238

Query: 192 KRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKN--SENLLSGDVKYHQGFSSNI 249
           K G++EIVIGMAHRGRLNVLVN+LGK P++LF EFE K+   E L SGDVKYH GFSS+ 
Sbjct: 239 KLGVKEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDR 298

Query: 250 NTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFG-TQVLPVLVHGDAAFSGQG 308
            T GG +HLSLAFNPSHLEI+NPVVEGS +AR +RR D     +VLP+L+HGDAAF+GQG
Sbjct: 299 ETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQG 358

Query: 309 VVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGD 368
           VV ETLN S++  Y TGGTIHI+INNQIGFTTSP D RST YCTD+ K+++AP+FHVNGD
Sbjct: 359 VVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGD 418

Query: 369 DPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRE 428
           DPE+V+  T++A+EYR KFKKD +I+++C+R+ GHNE D PS TQPLMYKKI KHP  RE
Sbjct: 419 DPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTRE 478

Query: 429 LYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYI 488
           LY++KL  + ++T+ E++ M+ E+ D +++G  +V         D    +W+P+L + + 
Sbjct: 479 LYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPA---DWLAGDWSPYLGHEWD 535

Query: 489 DNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYA 548
           D  +T + LE+LK L++K+T +P+GFK+H  VKKIL+DR EM  G+  +DWGMAE LA+A
Sbjct: 536 DPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFA 595

Query: 549 SLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHI 608
           SL+  GY VRLSGQDSGRGTFSHRHA+L++Q       +T   TYIPL+++S+ QA F +
Sbjct: 596 SLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQ-------KTG-ETYIPLNHLSEGQASFEV 647

Query: 609 INSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGL 668
            +S LSEEA+LGFEYG+STA PNTL IWEAQFGDFANGAQV+IDQFISS E+KWGR+SGL
Sbjct: 648 YDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGL 707

Query: 669 TLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLI 728
            ++LPHGYEGQGPEHSSARLERFLQLCA +N+Q+  PT+ +Q FHLLR Q +RP RKPL+
Sbjct: 708 VMLLPHGYEGQGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLV 767

Query: 729 IITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRK 788
           ++TPKSLLR   A S+L +LA G F  +I +ID+ +DPKK+KR++ CSGK+YYDL   R+
Sbjct: 768 VMTPKSLLRHPLAVSSLEELAEGSFQPVIGDIDE-LDPKKVKRVVLCSGKVYYDLLEARR 826

Query: 789 KKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYL 848
           K+  +DV I+RIEQLYPFP+E+    L K+   ++++W Q+EPKNQGAW  I+ ++ + L
Sbjct: 827 KRGIDDVAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEEVL 886

Query: 849 NSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAF 885
              QKL Y GR  SASPA GY S H K+Q  L+ +A 
Sbjct: 887 PEGQKLRYAGRPASASPAVGYMSLHKKQQEALVEDAL 923

Length = 924

>gnl\|CDD\|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component	Back alignment and domain information

>gnl\|CDD\|238974 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC)	Back alignment and domain information

>gnl\|CDD\|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain	Back alignment and domain information

>gnl\|CDD\|201386 pfam00676, E1_dh, Dehydrogenase E1 component	Back alignment and domain information

>gnl\|CDD\|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain	Back alignment and domain information

>gnl\|CDD\|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit	Back alignment and domain information

>gnl\|CDD\|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	Back alignment and domain information

>gnl\|CDD\|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		887
KOG0450\|consensus		1017		100.0
PRK12270		1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	100.0
TIGR00239		929	2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon	100.0
PRK09404		924	sucA 2-oxoglutarate dehydrogenase E1 component; Re	100.0
COG0567		906	SucA 2-oxoglutarate dehydrogenase complex, dehydro	100.0
KOG0451\|consensus		913		100.0
cd02016		265	TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami	100.0
COG1071		358	AcoA Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
PF00676		300	E1_dh: Dehydrogenase E1 component; InterPro: IPR00	100.0
COG0022		324	AcoB Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
PLN02269		362	Pyruvate dehydrogenase E1 component subunit alpha	100.0
TIGR03182		315	PDH_E1_alph_y pyruvate dehydrogenase E1 component,	100.0
PLN02374		433	pyruvate dehydrogenase (acetyl-transferring)	100.0
KOG0225\|consensus		394		100.0
CHL00149		341	odpA pyruvate dehydrogenase E1 component alpha sub	100.0
cd02000		293	TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP)	100.0
TIGR03181		341	PDH_E1_alph_x pyruvate dehydrogenase E1 component,	100.0
PRK12315		581	1-deoxy-D-xylulose-5-phosphate synthase; Provision	100.0
KOG1182\|consensus		432		100.0
KOG0525\|consensus		362		100.0
KOG0524\|consensus		359		100.0
TIGR00204		617	dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s	100.0
PRK05444		580	1-deoxy-D-xylulose-5-phosphate synthase; Provision	100.0
PRK12571		641	1-deoxy-D-xylulose-5-phosphate synthase; Provision	100.0
PLN02582		677	1-deoxy-D-xylulose-5-phosphate synthase	100.0
PLN02234		641	1-deoxy-D-xylulose-5-phosphate synthase	100.0
PRK05899		624	transketolase; Reviewed	100.0
CHL00144		327	odpB pyruvate dehydrogenase E1 component beta subu	100.0
PRK11892		464	pyruvate dehydrogenase subunit beta; Provisional	100.0
PTZ00182		355	3-methyl-2-oxobutanate dehydrogenase; Provisional	100.0
PLN02683		356	pyruvate dehydrogenase E1 component subunit beta	100.0
PRK09212		327	pyruvate dehydrogenase subunit beta; Validated	100.0
PLN02225		701	1-deoxy-D-xylulose-5-phosphate synthase	100.0
TIGR00232		653	tktlase_bact transketolase, bacterial and yeast. T	100.0
PLN02790		654	transketolase	99.97
PRK12753		663	transketolase; Reviewed	99.97
PRK12754		663	transketolase; Reviewed	99.96
PTZ00089		661	transketolase; Provisional	99.96
PF02779		178	Transket_pyr: Transketolase, pyrimidine binding do	99.93
cd07036		167	TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding	99.91
COG1154		627	Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m	99.88
TIGR03186		889	AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S	99.87
PRK09405		891	aceE pyruvate dehydrogenase subunit E1; Reviewed	99.83
KOG0523\|consensus		632		99.81
PRK13012		896	2-oxoacid dehydrogenase subunit E1; Provisional	99.81
cd07033		156	TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai	99.78
smart00861		168	Transket_pyr Transketolase, pyrimidine binding dom	99.75
PRK05261		785	putative phosphoketolase; Provisional	99.74
cd02007		195	TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s	99.67
COG3958		312	Transketolase, C-terminal subunit [Carbohydrate tr	99.65
COG0021		663	TktA Transketolase [Carbohydrate transport and met	99.59
cd02012		255	TPP_TK Thiamine pyrophosphate (TPP) family, Transk	99.59
cd02011		227	TPP_PK Thiamine pyrophosphate (TPP) family, Phosph	99.58
PRK11864		300	2-ketoisovalerate ferredoxin oxidoreductase subuni	99.49
TIGR00759		885	aceE pyruvate dehydrogenase E1 component, homodime	99.19
COG3959		243	Transketolase, N-terminal subunit [Carbohydrate tr	99.18
PF00456		332	Transketolase_N: Transketolase, thiamine diphospha	99.12
cd00568		168	TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa	99.11
cd02017		386	TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam	99.04
cd02002		178	TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC	99.02
cd02004		172	TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam	98.97
cd03372		179	TPP_ComE Thiamine pyrophosphate (TPP) family, ComE	98.77
cd02014		178	TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv	98.76
TIGR03336		595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	98.75
cd02015		186	TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet	98.71
PRK07524		535	hypothetical protein; Provisional	98.67
cd02013		196	TPP_Xsc_like Thiamine pyrophosphate (TPP) family,	98.64
PF02780		124	Transketolase_C: Transketolase, C-terminal domain;	98.62
PRK08327		569	acetolactate synthase catalytic subunit; Validated	98.62
PRK07119		352	2-ketoisovalerate ferredoxin reductase; Validated	98.57
PRK07092		530	benzoylformate decarboxylase; Reviewed	98.52
PRK08659		376	2-oxoglutarate ferredoxin oxidoreductase subunit a	98.51
cd03371		188	TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp	98.49
PF13292		270	DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn	98.47
cd02006		202	TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s	98.46
cd02008		178	TPP_IOR_alpha Thiamine pyrophosphate (TPP) family,	98.46
PRK08366		390	vorA 2-ketoisovalerate ferredoxin oxidoreductase s	98.45
cd02001		157	TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil	98.42
PRK06725		570	acetolactate synthase 3 catalytic subunit; Validat	98.41
TIGR03846		181	sulfopy_beta sulfopyruvate decarboxylase, beta sub	98.39
cd02005		183	TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family,	98.38
PRK09622		407	porA pyruvate flavodoxin oxidoreductase subunit al	98.37
PRK11865		299	pyruvate ferredoxin oxidoreductase subunit beta; P	98.37
PRK09627		375	oorA 2-oxoglutarate-acceptor oxidoreductase subuni	98.34
PF02775		153	TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter	98.34
cd02010		177	TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto	98.33
PRK08266		542	hypothetical protein; Provisional	98.33
PRK06163		202	hypothetical protein; Provisional	98.32
COG3957		793	Phosphoketolase [Carbohydrate transport and metabo	98.3
PRK06112		578	acetolactate synthase catalytic subunit; Validated	98.29
TIGR03710		562	OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s	98.29
PRK08155		564	acetolactate synthase catalytic subunit; Validated	98.27
PRK06546		578	pyruvate dehydrogenase; Provisional	98.23
cd02009		175	TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa	98.22
PRK07710		571	acetolactate synthase catalytic subunit; Reviewed	98.2
PRK06882		574	acetolactate synthase 3 catalytic subunit; Validat	98.16
PRK11269		591	glyoxylate carboligase; Provisional	98.13
PRK07525		588	sulfoacetaldehyde acetyltransferase; Validated	98.11
cd02003		205	TPP_IolD Thiamine pyrophosphate (TPP) family, IolD	98.11
PRK08199		557	thiamine pyrophosphate protein; Validated	98.11
cd02018		237	TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru	98.08
PRK06154		565	hypothetical protein; Provisional	98.07
TIGR00118		558	acolac_lg acetolactate synthase, large subunit, bi	98.03
PRK07586		514	hypothetical protein; Validated	98.02
TIGR01504		588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	98.01
PRK08527		563	acetolactate synthase 3 catalytic subunit; Validat	98.0
PRK09628		277	oorB 2-oxoglutarate-acceptor oxidoreductase subuni	98.0
PRK08367		394	porA pyruvate ferredoxin oxidoreductase subunit al	97.99
TIGR02720		575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	97.99
COG0028		550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	97.98
cd03376		235	TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam	97.98
PRK07064		544	hypothetical protein; Provisional	97.96
CHL00099		585	ilvB acetohydroxyacid synthase large subunit	97.94
PRK09124		574	pyruvate dehydrogenase; Provisional	97.92
PRK12474		518	hypothetical protein; Provisional	97.92
PRK05778		301	2-oxoglutarate ferredoxin oxidoreductase subunit b	97.86
TIGR03297		361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	97.85
cd03375		193	TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o	97.85
PRK07979		574	acetolactate synthase 3 catalytic subunit; Validat	97.83
PRK07418		616	acetolactate synthase 3 catalytic subunit; Reviewe	97.81
PRK08273		597	thiamine pyrophosphate protein; Provisional	97.78
PRK09107		595	acetolactate synthase 3 catalytic subunit; Validat	97.77
TIGR03457		579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	97.76
PRK11869		280	2-oxoacid ferredoxin oxidoreductase subunit beta;	97.74
PLN02470		585	acetolactate synthase	97.73
PRK06965		587	acetolactate synthase 3 catalytic subunit; Validat	97.71
PRK06466		574	acetolactate synthase 3 catalytic subunit; Validat	97.7
PRK07449		568	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1	97.68
TIGR02418		539	acolac_catab acetolactate synthase, catabolic. Ace	97.66
COG4231		640	Indolepyruvate ferredoxin oxidoreductase, alpha an	97.65
TIGR03254		554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	97.64
PRK06276		586	acetolactate synthase catalytic subunit; Reviewed	97.63
PRK09259		569	putative oxalyl-CoA decarboxylase; Validated	97.61
PRK08978		548	acetolactate synthase 2 catalytic subunit; Reviewe	97.59
PLN02573		578	pyruvate decarboxylase	97.59
PRK08617		552	acetolactate synthase; Reviewed	97.58
PRK06456		572	acetolactate synthase catalytic subunit; Reviewed	97.58
PRK08979		572	acetolactate synthase 3 catalytic subunit; Validat	97.55
PRK08611		576	pyruvate oxidase; Provisional	97.55
PRK06457		549	pyruvate dehydrogenase; Provisional	97.54
PRK11866		279	2-oxoacid ferredoxin oxidoreductase subunit beta;	97.49
PRK05858		542	hypothetical protein; Provisional	97.49
PRK08322		547	acetolactate synthase; Reviewed	97.49
TIGR03393		539	indolpyr_decarb indolepyruvate decarboxylase, Erwi	97.47
PRK11867		286	2-oxoglutarate ferredoxin oxidoreductase subunit b	97.45
TIGR02176		1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	97.39
cd06586		154	TPP_enzyme_PYR Pyrimidine (PYR) binding domain of	97.38
PRK06048		561	acetolactate synthase 3 catalytic subunit; Reviewe	97.37
PRK07282		566	acetolactate synthase catalytic subunit; Reviewed	97.36
PRK07789		612	acetolactate synthase 1 catalytic subunit; Validat	97.33
TIGR03336		595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	97.29
TIGR02177		287	PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta	97.11
COG0674		365	PorA Pyruvate:ferredoxin oxidoreductase and relate	97.11
PLN02980		1655	2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi	96.94
KOG1185\|consensus		571		96.78
TIGR03394		535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	96.65
PRK13029		1186	2-oxoacid ferredoxin oxidoreductase; Provisional	96.18
PF09364		379	XFP_N: XFP N-terminal domain; InterPro: IPR018970	95.99
PRK13030		1159	2-oxoacid ferredoxin oxidoreductase; Provisional	95.76
PRK09193		1165	indolepyruvate ferredoxin oxidoreductase; Validate	95.47
COG3961		557	Pyruvate decarboxylase and related thiamine pyroph	94.76
COG1013		294	PorB Pyruvate:ferredoxin oxidoreductase and relate	94.4
COG2609		887	AceE Pyruvate dehydrogenase complex, dehydrogenase	94.28
COG3960		592	Glyoxylate carboligase [General function predictio	93.31
cd03377		365	TPP_PFOR_PNO Thiamine pyrophosphate (TPP family),	92.32
PRK08659		376	2-oxoglutarate ferredoxin oxidoreductase subunit a	91.79
PF01855		230	POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta	89.19
KOG1184\|consensus		561		88.58
PF01855		230	POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta	88.55
KOG4166\|consensus		675		87.6
PRK09627		375	oorA 2-oxoglutarate-acceptor oxidoreductase subuni	87.07
cd06586		154	TPP_enzyme_PYR Pyrimidine (PYR) binding domain of	86.4
PF03894		179	XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate	83.63
cd07039		164	TPP_PYR_POX Pyrimidine (PYR) binding domain of POX	81.45
TIGR03710		562	OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s	81.38
cd07035		155	TPP_PYR_POX_like Pyrimidine (PYR) binding domain o	81.23

>KOG0450\|consensus	Back alignment and domain information

Probab=100.00  E-value=2.5e-243  Score=2009.40  Aligned_cols=853  Identities=45%  Similarity=0.752  Sum_probs=809.1

Q ss_pred             hhhhhHHHHHHHHHHHHhcccccCccCCCCCCccc------cccccCcccccCCCCccccccccccC--ccc-cCCcccC
Q psy9579          24 LENNKKFKLISLIDNYRRLGVYFANLDPLKQKIKT------INLEYKLNIKFYDFNESDMDSVINVN--NIF-FGVKKTT   94 (887)
Q Consensus        24 ~~~~~~~~~~~li~ayr~~GH~~A~ldPL~~~~~~------~~~~~~L~~~~~gl~~~dl~~~~~~~--~~~-~~~~~~t   94 (887)
                      ......++|+.||+||+.+||..|+|||||+....      .++|++|++.+|||+|.|||++|.+.  .|. -+.+.+|
T Consensus       123 ~~v~~hl~vqlLiRaYQirGH~~A~LDPLGi~~~~~~~~~p~~i~~~~~l~~Ygf~E~DLDref~L~~t~Fi~~~~~~lt  202 (1017)
T KOG0450|consen  123 KTVEDHLKVQLLIRAYQIRGHHKAKLDPLGINDADLDSSVPADIPEELTLAFYGFTEADLDREFHLPTTTFIGGGESSLT  202 (1017)
T ss_pred             ccHHHHHHHHHHHHHHHhcccccccCCccccccccccccCCCCCChhhhhhhcCCchhhccceeccCCcccccCCCcccc
Confidence            34567899999999999999999999999984321      12456799999999999999999773  222 2467899


Q ss_pred             HHHHHHHHHHHhcCCcccccccccChHHhHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Q psy9579          95 LRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLE  174 (887)
Q Consensus        95 l~ei~~~L~~~Ycg~ig~E~~hi~~~~~~~Wl~~~~E~~~~~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~e  174 (887)
                      ||||+++|+++||++||+|||||.|.++++||++|+|++. ...++.|+++-||.+|.++..||+||++||+..||||+|
T Consensus       203 LreIl~rlE~~YC~~igvEfmhI~~~eqcnWir~k~EtP~-~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRFGLE  281 (1017)
T KOG0450|consen  203 LREILRRLEKAYCGSIGVEFMHINDLEQCNWIRQKFETPG-PMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFGLE  281 (1017)
T ss_pred             HHHHHHHHHHHhhccceeEEEeeCcHHHhHHHHHhccCCC-ccccCHHHHHHHHHHHHHhhHHHHHHhhhCCcccccccc
Confidence            9999999999999999999999999999999999999984 678999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHHHccCCCCCCCCCCCcccccccccccCC--C
Q psy9579         175 GSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINT--P  252 (887)
Q Consensus       175 G~Ea~~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~--~  252 (887)
                      |+|+++||+++||++++.+|++++|+||+||||+|+|+|+..+|+++||+||.|...-..|+||||||+|.+.++..  .
T Consensus       282 GcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~~DeGSGDVKYHLG~~~~R~~r~s  361 (1017)
T KOG0450|consen  282 GCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAADEGSGDVKYHLGMYYERPNRVS  361 (1017)
T ss_pred             chhhhhhHHHHHhhhhhhcCchheEecCCccchhHHHHHHHhhHHHHHHHhccCCCCCcCCCCceeeeeccccccccccC
Confidence            99999999999999999999999999999999999999999999999999999966555799999999999988765  5


Q ss_pred             CceeEEEeecCCCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEE
Q psy9579         253 GGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIII  332 (887)
Q Consensus       253 gg~~hl~l~~npShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~  332 (887)
                      |+.++|+++.||||||+++||++|++||.|++.+|..+++++.|++||||||+|||+|||||+++.||+|.++||||||+
T Consensus       362 ~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVv  441 (1017)
T KOG0450|consen  362 GKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVV  441 (1017)
T ss_pred             CceeEEEEecCchhhcccCceeechHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEE
Confidence            77899999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             eCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCC
Q psy9579         333 NNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLT  412 (887)
Q Consensus       333 NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~t  412 (887)
                      ||||||||+|..+||++||||+||+.++||||||+||||||..+++.|.|+|.+|++||+||++|||++||||.|+|+||
T Consensus       442 NNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~FT  521 (1017)
T KOG0450|consen  442 NNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPMFT  521 (1017)
T ss_pred             ccccccccCcccccCCCCchhHHHHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCC----C
Q psy9579         413 QPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGY----I  488 (887)
Q Consensus       413 qp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~----~  488 (887)
                      ||.||+.|+++++.++.|.++|+++|.++++|+++..+++...+++|++.++.+.+....+|++..|.+++.+..    .
T Consensus       522 QPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~spW~gF~spd~~~~i~  601 (1017)
T KOG0450|consen  522 QPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLDSPWPGFFSPDGQPKIL  601 (1017)
T ss_pred             chHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhcCCCccccCccCCCccc
Confidence            999999999999999999999999999999999999999999999999999999876544569999999987532    2


Q ss_pred             CCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCc
Q psy9579         489 DNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGT  568 (887)
Q Consensus       489 ~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGt  568 (887)
                      ..++||+..+.|+.||..+.++|++|++|..|+|+|+.|.+|+++ +.||||++|+|||||||.||.+||||||||+|||
T Consensus       602 ~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hrgl~Ril~~R~~mi~~-~~iDwal~EalAFgsLl~EG~hVRlSGQDVERGT  680 (1017)
T KOG0450|consen  602 PCPSTGVKEEILKHIGKVASSVPEGFKIHRGLKRILKNRAQMIKS-EGVDWALAEALAFGSLLKEGIHVRLSGQDVERGT  680 (1017)
T ss_pred             cCCCCCCCHHHHHHHHHhhccCCcccchhhhHHHHHHHHHHhhhh-cccchHHHHHHHHHHHHhcCceEEeecccccccc
Confidence            245799999999999999999999999999999999999999998 7999999999999999999999999999999999


Q ss_pred             ccccceeeeccccccccccCCC-cEEecCCCccccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccch
Q psy9579         569 FSHRHAILYNQDYQYSEKETDI-STYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGA  647 (887)
Q Consensus       569 FshRHav~~dq~~~~~~~~~~~-~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~A  647 (887)
                      |||||+|||||+        ++ .+|+||++|+++|+++.|.||.|||+||||||+||||++|+.|++||||||||+|+|
T Consensus       681 FShRH~VLHDQ~--------~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVlWEAQFGDFaNtA  752 (1017)
T KOG0450|consen  681 FSHRHHVLHDQE--------VDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWEAQFGDFANTA  752 (1017)
T ss_pred             cccchhhhcccc--------cCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCceEEeehhhccccccc
Confidence            999999999999        66 899999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhHHHHhcCccCcEEEecccCCCCCccccCchHHHHHhhhcCC------------------CcEEEcCCCHh
Q psy9579         648 QVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANN------------------NIQIVQPTSAS  709 (887)
Q Consensus       648 q~~~Dq~i~~~~~kw~~~sglv~~lP~G~~g~GpeHSs~r~Er~lq~~~~~------------------nl~V~~pstpa  709 (887)
                      |+||||||++|++||-+++||||+|||||+|+||||||+|+|||||||+++                  ||+||||||||
T Consensus       753 Q~IiDQFIssGqaKW~rqsGlVllLPHGyeG~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPa  832 (1017)
T KOG0450|consen  753 QCIIDQFISSGQAKWVRQSGLVLLLPHGYEGMGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPA  832 (1017)
T ss_pred             hhhHHhHhccchhhhhhhcCeEEEccCCcCCCCcccccccHHHHHHhccCCCccCCcccHHHHHHHhcCCeEEEecCChH
Confidence            999999999999999999999999999999999999999999999999975                  99999999999


Q ss_pred             HHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCc-ceeecccccc-ccCCCCceEEEEEechHHHHHHHHH
Q psy9579         710 QIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGK-FNKIINEIDD-IIDPKKIKRIIACSGKIYYDLFNFR  787 (887)
Q Consensus       710 ~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~-f~~~i~~~~~-~~~~~~v~r~i~~~G~~~~~l~~~~  787 (887)
                      ||||+|||||.++||||||+|+||+|||||.+.|+++||.+|+ |+.+|++... +.++++|+|+|+|||||||+|.++|
T Consensus       833 NyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vkrlv~csGkVyydL~k~R  912 (1017)
T KOG0450|consen  833 NYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPENVKRLVFCSGKVYYDLTKER  912 (1017)
T ss_pred             HHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChhhceEEEEecceEehhhhHHH
Confidence            9999999999999999999999999999999999999999985 9999988543 3567899999999999999999999


Q ss_pred             HHcC-CCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhcc-CCcEEEecCCCCCCC
Q psy9579         788 KKKN-KNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNS-TQKLIYVGRSCSASP  865 (887)
Q Consensus       788 ~~~~-~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~-~~~~~~~gr~~~~~~  865 (887)
                      ++.+ ..+|||+|+|||+|||++.|.++++|||| +|+|||||||+|||+|.||.|||...+.. +.+++|+||.++++|
T Consensus       913 k~~~~~~~vAi~RvEQl~PFp~dli~~e~~~Ypn-aEivWcQEE~~NmG~w~Yv~PRl~T~l~~~~r~v~Y~GR~Psaa~  991 (1017)
T KOG0450|consen  913 KEVGLEGDVAITRVEQLSPFPFDLIQQELNKYPN-AEIVWCQEEHKNMGAWDYVEPRLRTALKRLARPVKYAGRLPSAAP  991 (1017)
T ss_pred             HhcCcccceeEEEeeccCCCcHHHHHHHHHhCCC-ceeeehhhhhcccCchhhcchHHHHHHHhhCCcceecccCCcccc
Confidence            9887 57899999999999999999999999999 69999999999999999999999998774 679999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHhhcC
Q psy9579         866 ASGYYSKHCKEQITLLNNAFLK  887 (887)
Q Consensus       866 a~g~~~~h~~~~~~i~~~a~~~  887 (887)
                      |+|....|.+||++++++||..
T Consensus       992 AtGnk~~Hl~eq~~~l~~a~~~ 1013 (1017)
T KOG0450|consen  992 ATGNKQTHLAEQKAFLNKAFQL 1013 (1017)
T ss_pred             cccchhHHHHHHHHHHHHHhcc
Confidence            9999999999999999999963

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed	Back alignment and domain information

>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component	Back alignment and domain information

>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed	Back alignment and domain information

>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]	Back alignment and domain information

>KOG0451\|consensus	Back alignment and domain information

>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC)	Back alignment and domain information

>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]	Back alignment and domain information

>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex	Back alignment and domain information

>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	Back alignment and domain information

>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha	Back alignment and domain information

>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit	Back alignment and domain information

>PLN02374 pyruvate dehydrogenase (acetyl-transferring)	Back alignment and domain information

>KOG0225\|consensus	Back alignment and domain information

>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed	Back alignment and domain information

>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	Back alignment and domain information

>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit	Back alignment and domain information

>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	Back alignment and domain information

>KOG1182\|consensus	Back alignment and domain information

>KOG0525\|consensus	Back alignment and domain information

>KOG0524\|consensus	Back alignment and domain information

>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	Back alignment and domain information

>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	Back alignment and domain information

>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>PRK05899 transketolase; Reviewed	Back alignment and domain information

>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated	Back alignment and domain information

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional	Back alignment and domain information

>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional	Back alignment and domain information

>PLN02683 pyruvate dehydrogenase E1 component subunit beta	Back alignment and domain information

>PRK09212 pyruvate dehydrogenase subunit beta; Validated	Back alignment and domain information

>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase	Back alignment and domain information

>TIGR00232 tktlase_bact transketolase, bacterial and yeast	Back alignment and domain information

>PLN02790 transketolase	Back alignment and domain information

>PRK12753 transketolase; Reviewed	Back alignment and domain information

>PRK12754 transketolase; Reviewed	Back alignment and domain information

>PTZ00089 transketolase; Provisional	Back alignment and domain information

>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2	Back alignment and domain information

>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins	Back alignment and domain information

>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]	Back alignment and domain information

>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase	Back alignment and domain information

>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed	Back alignment and domain information

>KOG0523\|consensus	Back alignment and domain information

>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional	Back alignment and domain information

>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins	Back alignment and domain information

>smart00861 Transket_pyr Transketolase, pyrimidine binding domain	Back alignment and domain information

>PRK05261 putative phosphoketolase; Provisional	Back alignment and domain information

>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis	Back alignment and domain information

>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates	Back alignment and domain information

>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O	Back alignment and domain information

>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional	Back alignment and domain information

>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type	Back alignment and domain information

>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2	Back alignment and domain information

>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor	Back alignment and domain information

>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E	Back alignment and domain information

>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)	Back alignment and domain information

>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)	Back alignment and domain information

>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE)	Back alignment and domain information

>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions	Back alignment and domain information

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit	Back alignment and domain information

>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS	Back alignment and domain information

>PRK07524 hypothetical protein; Provisional	Back alignment and domain information

>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc)	Back alignment and domain information

>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2	Back alignment and domain information

>PRK08327 acetolactate synthase catalytic subunit; Validated	Back alignment and domain information

>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated	Back alignment and domain information

>PRK07092 benzoylformate decarboxylase; Reviewed	Back alignment and domain information

>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated	Back alignment and domain information

>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins	Back alignment and domain information

>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B	Back alignment and domain information

>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl)	Back alignment and domain information

>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit	Back alignment and domain information

>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed	Back alignment and domain information

>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase)	Back alignment and domain information

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit	Back alignment and domain information

>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC)	Back alignment and domain information

>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed	Back alignment and domain information

>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional	Back alignment and domain information

>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed	Back alignment and domain information

>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor	Back alignment and domain information

>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation	Back alignment and domain information

>PRK08266 hypothetical protein; Provisional	Back alignment and domain information

>PRK06163 hypothetical protein; Provisional	Back alignment and domain information

>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK06112 acetolactate synthase catalytic subunit; Validated	Back alignment and domain information

>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit	Back alignment and domain information

>PRK08155 acetolactate synthase catalytic subunit; Validated	Back alignment and domain information

>PRK06546 pyruvate dehydrogenase; Provisional	Back alignment and domain information

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD)	Back alignment and domain information

>PRK07710 acetolactate synthase catalytic subunit; Reviewed	Back alignment and domain information

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK11269 glyoxylate carboligase; Provisional	Back alignment and domain information

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated	Back alignment and domain information

>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv	Back alignment and domain information

>PRK08199 thiamine pyrophosphate protein; Validated	Back alignment and domain information

>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways	Back alignment and domain information

>PRK06154 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type	Back alignment and domain information

>PRK07586 hypothetical protein; Validated	Back alignment and domain information

>TIGR01504 glyox_carbo_lig glyoxylate carboligase	Back alignment and domain information

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed	Back alignment and domain information

>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed	Back alignment and domain information

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase	Back alignment and domain information

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	Back alignment and domain information

>PRK07064 hypothetical protein; Provisional	Back alignment and domain information

>CHL00099 ilvB acetohydroxyacid synthase large subunit	Back alignment and domain information

>PRK09124 pyruvate dehydrogenase; Provisional	Back alignment and domain information

>PRK12474 hypothetical protein; Provisional	Back alignment and domain information

>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated	Back alignment and domain information

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase	Back alignment and domain information

>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	Back alignment and domain information

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed	Back alignment and domain information

>PRK08273 thiamine pyrophosphate protein; Provisional	Back alignment and domain information

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase	Back alignment and domain information

>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional	Back alignment and domain information

>PLN02470 acetolactate synthase	Back alignment and domain information

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	Back alignment and domain information

>TIGR02418 acolac_catab acetolactate synthase, catabolic	Back alignment and domain information

>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]	Back alignment and domain information

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase	Back alignment and domain information

>PRK06276 acetolactate synthase catalytic subunit; Reviewed	Back alignment and domain information

>PRK09259 putative oxalyl-CoA decarboxylase; Validated	Back alignment and domain information

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed	Back alignment and domain information

>PLN02573 pyruvate decarboxylase	Back alignment and domain information

>PRK08617 acetolactate synthase; Reviewed	Back alignment and domain information

>PRK06456 acetolactate synthase catalytic subunit; Reviewed	Back alignment and domain information

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated	Back alignment and domain information

>PRK08611 pyruvate oxidase; Provisional	Back alignment and domain information

>PRK06457 pyruvate dehydrogenase; Provisional	Back alignment and domain information

>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional	Back alignment and domain information

>PRK05858 hypothetical protein; Provisional	Back alignment and domain information

>PRK08322 acetolactate synthase; Reviewed	Back alignment and domain information

>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family	Back alignment and domain information

>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed	Back alignment and domain information

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	Back alignment and domain information

>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes	Back alignment and domain information

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed	Back alignment and domain information

>PRK07282 acetolactate synthase catalytic subunit; Reviewed	Back alignment and domain information

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated	Back alignment and domain information

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit	Back alignment and domain information

>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family	Back alignment and domain information

>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]	Back alignment and domain information

>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding	Back alignment and domain information

>KOG1185\|consensus	Back alignment and domain information

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family	Back alignment and domain information

>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria	Back alignment and domain information

>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated	Back alignment and domain information

>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]	Back alignment and domain information

>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]	Back alignment and domain information

>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]	Back alignment and domain information

>COG3960 Glyoxylate carboligase [General function prediction only]	Back alignment and domain information

>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes	Back alignment and domain information

>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated	Back alignment and domain information

>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains	Back alignment and domain information

>KOG1184\|consensus	Back alignment and domain information

>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains	Back alignment and domain information

>KOG4166\|consensus	Back alignment and domain information

>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed	Back alignment and domain information

>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes	Back alignment and domain information

>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria	Back alignment and domain information

>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX	Back alignment and domain information

>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit	Back alignment and domain information

>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		887
2jgd_B		933	E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length =		0.0
2jgd_A		933	E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length =		0.0
2xt6_A		1113	Crystal Structure Of Mycobacterium Smegmatis Alpha-		1e-173
2xta_A		868	Crystal Structure Of The Suca Domain Of Mycobacteri		1e-173

>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = 933

Back alignment and structure

Iteration: 1

Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/855 (48%), Positives = 563/855 (65%), Gaps = 23/855 (2%) Query: 35 LIDNYRRLGVYFANLDPLK--QKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKK 92 LI+ YR G ANLDPL Q+ K +L + F+D E+D NV + G + Sbjct: 95 LINAYRFRGHQHANLDPLGLWQQDKVADL----DPSFHDLTEADFQETFNVGSFASGKET 150 Query: 93 TTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLT 152 L LL+ LK TY IG+E+M+I + EE WIQ+++ES +AT F+ E+KK L LT Sbjct: 151 MKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIESGRAT--FNSEEKKRFLSELT 208 Query: 153 AAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLV 212 AAE E YL ++ G KRFSLEG ++ I L E+I+H+G G RE+V+GMAHRGRLNVLV Sbjct: 209 AAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLV 268 Query: 213 NILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINP 272 N+LGKKP++LFDEF K+ E+L +GDVKYH GFSS+ T GG++HL+LAFNPSHLEI++P Sbjct: 269 NVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSP 328 Query: 273 VVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYXXXXXXXXXX 332 VV GS +AR++R D+ +VLP+ +HGDAA +GQGVV ETLN SK Y Sbjct: 329 VVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVI 388 Query: 333 XXXXXXXTS-PNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDC 391 TS P D RST YCTDIGK+++AP+FHVN DDPE+V VT++A+++R FK+D Sbjct: 389 NNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDV 448 Query: 392 IINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKE 451 I+++C+R+ GHNE D PS TQPLMY+KI KHP R++Y++KL+ +K+ T ++ M+ Sbjct: 449 FIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL 508 Query: 452 FNDMINSGKSIVNSI-PSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNI 510 + D +++G +V P N W+P+L + + + + +++L+ L+K+I+ + Sbjct: 509 YRDALDAGDCVVAEWRPMNM----HSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTV 564 Query: 511 PKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFS 570 P+ ++ V KI DR M G+ DWG AE+LAYA+LV G VRLSG+DSGRGTF Sbjct: 565 PEAVEMQSRVAKIYADRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFF 624 Query: 571 HRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASP 630 HRHA+++NQ ++ STY PL ++ Q F + +S+LSEEA+L FEYG++TA P Sbjct: 625 HRHAVIHNQ--------SNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEP 676 Query: 631 NTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLER 690 TLTIWEAQFGDFANGAQV+IDQFISS E+KWGR+ GL ++LPHGYEGQGPEHSSARLER Sbjct: 677 RTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLER 736 Query: 691 FLQLCANNNIQIVQPTSASQIFHLLRYQXXXXXXXXXXXXXXXSLLRKKEASSTLMDLAT 750 +LQLCA N+Q+ P++ +Q++H+LR Q SLLR A S+L +LA Sbjct: 737 YLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAN 796 Query: 751 GKFNXXXXXXXXXXXXXXXXXXXACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNED 810 G F CSGK+YYDL R+K N++DV I+RIEQLYPFP++ Sbjct: 797 GTF-LPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKA 855 Query: 811 FLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYY 870 ++L++F + + +W Q+EP NQGAW + + + + L Y GR SASPA GY Sbjct: 856 MQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGYM 915 Query: 871 SKHCKEQITLLNNAF 885 S H K+Q L+N+A Sbjct: 916 SVHQKQQQDLVNDAL 930

PyMOL of 2jgd

>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = 933

Back alignment and structure

>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic Form) Length = 1113

Back alignment and structure

>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex With Acetyl-Coa (Triclinic Form) Length = 868

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		887
2jgd_A		933	2-oxoglutarate dehydrogenase E1 component; flavopr	0.0
2xt6_A		1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	0.0
2yic_A		868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-17
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
2ozl_A		365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	3e-04

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Length = 933	Back alignment and structure

 Score = 1408 bits (3646), Expect = 0.0
 Identities = 434/884 (49%), Positives = 609/884 (68%), Gaps = 17/884 (1%)

Query: 3   SMKYRNTPINFKNLNKEKINILENNKKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLE 62
              +R    +    +    +   N K+ K++ LI+ YR  G   ANLDPL    +    +
Sbjct: 63  REYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVAD 122

Query: 63  YKLNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEE 122
             L+  F+D  E+D     NV +   G +   L  LL+ LK TY   IG+E+M+I + EE
Sbjct: 123 --LDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGAEYMHITSTEE 180

Query: 123 VEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILS 182
             WIQ+++ES +    F+ E+KK  L  LTAAE  E YL  ++ G KRFSLEG ++ I  
Sbjct: 181 KRWIQQRIESGR--ATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPM 238

Query: 183 LNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYH 242
           L E+I+H+G  G RE+V+GMAHRGRLNVLVN+LGKKP++LFDEF  K+ E+L +GDVKYH
Sbjct: 239 LKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYH 298

Query: 243 QGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDA 302
            GFSS+  T GG++HL+LAFNPSHLEI++PVV GS +AR++R D+    +VLP+ +HGDA
Sbjct: 299 MGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDA 358

Query: 303 AFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTS-PNDLRSTLYCTDIGKIIEAP 361
           A +GQGVV ETLN SK   Y  GGT+ I+INNQ+GFTTS P D RST YCTDIGK+++AP
Sbjct: 359 AVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAP 418

Query: 362 VFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIF 421
           +FHVN DDPE+V  VT++A+++R  FK+D  I+++C+R+ GHNE D PS TQPLMY+KI 
Sbjct: 419 IFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIK 478

Query: 422 KHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAP 481
           KHP  R++Y++KL+ +K+ T  ++  M+  + D +++G  +V         +     W+P
Sbjct: 479 KHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPM---NMHSFTWSP 535

Query: 482 FLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGM 541
           +L + + +     + +++L+ L+K+I+ +P+  ++   V KI  DR  M  G+   DWG 
Sbjct: 536 YLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGG 595

Query: 542 AEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSK 601
           AE+LAYA+LV  G  VRLSG+DSGRGTF HRHA+++NQ         + STY PL ++  
Sbjct: 596 AENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQS--------NGSTYTPLQHIHN 647

Query: 602 NQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEK 661
            Q  F + +S+LSEEA+L FEYG++TA P TLTIWEAQFGDFANGAQV+IDQFISS E+K
Sbjct: 648 GQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQK 707

Query: 662 WGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIR 721
           WGR+ GL ++LPHGYEGQGPEHSSARLER+LQLCA  N+Q+  P++ +Q++H+LR Q +R
Sbjct: 708 WGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALR 767

Query: 722 PIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYY 781
            +R+PL++++PKSLLR   A S+L +LA G F   I EID+ +DPK +KR++ CSGK+YY
Sbjct: 768 GMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDE-LDPKGVKRVVMCSGKVYY 826

Query: 782 DLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIK 841
           DL   R+K N++DV I+RIEQLYPFP++   ++L++F + +  +W Q+EP NQGAW   +
Sbjct: 827 DLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQ 886

Query: 842 ENILKYLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAF 885
            +  + +     L Y GR  SASPA G+ S H K+Q  L+N+A 
Sbjct: 887 HHFREVIPFGASLRYAGRPASASPAVGHMSVHQKQQQDLVNDAL 930

PyMOL of 2jgd

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113	Back alignment and structure

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Length = 868	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		887
2yic_A		868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	100.0
2xt6_A		1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	100.0
2jgd_A		933	2-oxoglutarate dehydrogenase E1 component; flavopr	100.0
2bfd_A		400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	100.0
1qs0_A		407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	100.0
1w85_A		368	Pyruvate dehydrogenase E1 component, alpha subunit	100.0
2ozl_A		365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	100.0
1umd_A		367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	100.0
2o1s_A		621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	100.0
3mos_A		616	Transketolase, TK; thiamin diphosphate TPP THDP en	100.0
2o1x_A		629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	100.0
1qs0_B		338	2-oxoisovalerate dehydrogenase beta-subunit; heter	100.0
2ozl_B		341	PDHE1-B, pyruvate dehydrogenase E1 component subun	100.0
2bfd_B		342	2-oxoisovalerate dehydrogenase beta subunit; oxido	100.0
1gpu_A		680	Transketolase; transferase(ketone residues); HET:	100.0
1umd_B		324	E1-beta, 2-OXO acid dehydrogenase beta subunit; al	100.0
1ik6_A		369	Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o	100.0
2e6k_A		651	Transketolase; structural genomics, NPPSFA, nation	100.0
3rim_A		700	Transketolase, TK; TPP, transferase; HET: TPP; 2.4	100.0
1r9j_A		673	Transketolase; domains, EACH of the alpha/beta typ	100.0
1itz_A		675	Transketolase; calvin cycle, cofactor, thiamine py	100.0
2r8o_A		669	Transketolase 1, TK 1; reaction intermediate, calc	100.0
1w85_B		324	Pyruvate dehydrogenase E1 component, beta subunit;	100.0
3uk1_A		711	Transketolase; structural genomics, seattle struct	100.0
3kom_A		663	Transketolase; rossmann fold, csgid, transferase,	100.0
3m49_A		690	Transketolase; alpha-beta-alpha sandwich, csgid, t	100.0
3l84_A		632	Transketolase; TKT, structural genomics, center fo	100.0
2qtc_A		886	Pyruvate dehydrogenase E1 component; thiamin dipho	100.0
1yd7_A		395	2-keto acid:ferredoxin oxidoreductase subunit alph	99.67
3ahc_A		845	Phosphoketolase, xylulose 5-phosphate/fructose 6-p	99.63
4feg_A		603	Pyruvate oxidase; carbanion, structure activity re	99.55
2c42_A		1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	99.33
1v5e_A		590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	98.9
2pan_A		616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	98.85
1q6z_A		528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	98.82
2vk8_A		563	Pyruvate decarboxylase isozyme 1; asymmetric activ	98.81
2uz1_A		563	Benzaldehyde lyase; thiamine diphosphate, thiamine	98.73
2iht_A		573	Carboxyethylarginine synthase; thiamin diphosphate	98.71
1ozh_A		566	ALS, acetolactate synthase, catabolic; acetohydrox	98.7
2pgn_A		589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	98.64
1ovm_A		552	Indole-3-pyruvate decarboxylase; thiamine diphosph	98.64
2vbi_A		566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	98.62
1ybh_A		590	Acetolactate synthase, chloroplast; acetohydroxyac	98.62
2vbf_A		570	Branched-chain alpha-ketoacid decarboxylase; KDCA,	98.61
1t9b_A		677	Acetolactate synthase, mitochondrial; acetohydroxy	98.61
2nxw_A		565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	98.55
3hww_A		556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	98.51
3eya_A		549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	98.49
2q28_A		564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	98.49
2c31_A		568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	98.45
2x7j_A		604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	98.43
2wvg_A		568	PDC, pyruvate decarboxylase; thiamine diphosphate,	98.41
3lq1_A		578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	98.26
3ju3_A		118	Probable 2-oxoacid ferredoxin oxidoreductase, ALP;	98.19
2c42_A		1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	96.04

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*	Back alignment and structure

Probab=100.00  E-value=1e-198  Score=1789.06  Aligned_cols=837  Identities=41%  Similarity=0.711  Sum_probs=752.0

Q ss_pred             hhHHHHHHHHHHHHhcccccCccCCCCCCcc--ccccccCcccccCCCCccccccccccCccccCCcccCHHHHHHHHHH
Q psy9579          27 NKKFKLISLIDNYRRLGVYFANLDPLKQKIK--TINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFLKN  104 (887)
Q Consensus        27 ~~~~~~~~li~ayr~~GH~~A~ldPL~~~~~--~~~~~~~L~~~~~gl~~~dl~~~~~~~~~~~~~~~~tl~ei~~~L~~  104 (887)
                      .++++|++||+|||.+||+.|+||||++.+.  . .. |+|++.+|||+++||+++|.+|++. |...+||+||+++|++
T Consensus         6 ~~~~~~~~li~~yr~~gh~~a~~dpl~~~~~~~~-~~-~~l~~~~~g~~~~d~~~~~~~~~~~-~~~~~~l~~~~~~l~~   82 (868)
T 2yic_A            6 DKNARVIELIAAYRNRGHLMADIDPLRLDNTRFR-SH-PDLDVNSHGLTLWDLDREFKVDGFA-GVQRKKLRDILSVLRD   82 (868)
T ss_dssp             -CHHHHHHHHHHHHHHGGGTSCCCTTCCCTHHHH-C------------CCSTTSSBC---------CCCBHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCccceecCCCCCCCCCCC-CC-CccCHHhcCCChHHhCCeeccCCcc-CcCcCCHHHHHHHHHH
Confidence            4688999999999999999999999998331  3 34 8999999999999999999998764 7778999999999999


Q ss_pred             HhcCCcccccccccChHHhHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCchhHHHHHH
Q psy9579         105 TYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLN  184 (887)
Q Consensus       105 ~Ycg~ig~E~~hi~~~~~~~Wl~~~~E~~~~~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~eG~Ea~~vgl~  184 (887)
                      +|||+||+|||||.|++++.|+++++|...  +.+++|+++++|++|+++|.||+++.++|.++||||++||||+++|++
T Consensus        83 ~yc~~ig~e~~~i~~~~~~~w~~~~~e~~~--~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~~G~Ea~~~g~~  160 (868)
T 2yic_A           83 AYCRHVGVEYTHILEPEQQRWIQERVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMD  160 (868)
T ss_dssp             HHSSSEEEECTTCSCHHHHHHHHHHHSSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHH
T ss_pred             hhcCCCCcceeccCChHHhHHHHHHhccCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHH
Confidence            999999999999999999999999999864  789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHHHccCCCCCC--CCCCCcccccccccccCCC-Cc-eeEEEe
Q psy9579         185 EIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSEN--LLSGDVKYHQGFSSNINTP-GG-VIHLSL  260 (887)
Q Consensus       185 ~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~~~~--~~~GDvkyHlG~s~~~~~~-gg-~~hl~l  260 (887)
                      ++++.+++++++|+++||+||||+|+|+|++|+|+.+||+||+|+.+++  .++||||||+|.++..... |+ .+|+++
T Consensus       161 ~~l~~~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l  240 (868)
T 2yic_A          161 AVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSL  240 (868)
T ss_dssp             HHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEE
T ss_pred             HHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeee
Confidence            9999999999999999999999999999999999999999999998765  3678999999998655432 55 799999


Q ss_pred             ecCCCcccccccccchhHHHHHhhccCCCC-----CceEEEEeecCcccccccHHHHHHHHhccCCCCCC--CEEEEEEe
Q psy9579         261 AFNPSHLEIINPVVEGSAKARMERRDDKFG-----TQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTG--GTIHIIIN  333 (887)
Q Consensus       261 ~~npShle~v~Pva~G~A~A~q~~~~~~~~-----~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lp--GvIfiv~N  333 (887)
                      ++||||||.++|+|+|+|+|.|+++.+.++     .+.+++|+||||||++||+||||||||++  |++|  |+||||+|
T Consensus       241 ~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~--~~lp~g~vi~iv~N  318 (868)
T 2yic_A          241 TANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALL--RGYRTGGTIHIVVN  318 (868)
T ss_dssp             CCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTC--TTTCCSCCEEEEEE
T ss_pred             cCCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHh--cCCCCCCeEEEEEc
Confidence            999999999999999999999998643222     57899999999997799999999999999  7776  89999999


Q ss_pred             CCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCC
Q psy9579         334 NQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQ  413 (887)
Q Consensus       334 Nq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tq  413 (887)
                      |||||||++.+++++.+++++|++||+|++||||+||+||+.|+++|++|+|++++|+|||++|||++|||++|||+|||
T Consensus       319 N~~g~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~~~~  398 (868)
T 2yic_A          319 NQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQ  398 (868)
T ss_dssp             CSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTC
T ss_pred             CCcccccCccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccccCC
Confidence            99999999888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCccCccccccccccCCCC--CC
Q psy9579         414 PLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPS-NFIYDKSKSEWAPFLKNGYI--DN  490 (887)
Q Consensus       414 p~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~-~~~~~~~~~~w~~~~~~~~~--~~  490 (887)
                      |.+|+.+++++||+.+|+++|+++|++|++++++++++++++++++++.|++..| .+ .     .| .+....+.  .+
T Consensus       399 p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~-~-----~~-~~~~~~~~~~~~  471 (868)
T 2yic_A          399 PYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEI-E-----PS-ESVEADQQIPSK  471 (868)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-c-----cc-cccccccccccC
Confidence            9999999999999999999999999999999999999999999999999887422 11 1     23 22211121  24


Q ss_pred             CCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCccc
Q psy9579         491 CNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFS  570 (887)
Q Consensus       491 ~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFs  570 (887)
                      .+|+++.+.|+.++++++++|++|++|++|+++++.|.+|+++ +.||||++|+|||||||.+|++|||+||||+|||||
T Consensus       472 ~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~-~~i~~a~~e~la~~~l~~~~~~V~~~G~Dv~~~Tfs  550 (868)
T 2yic_A          472 LATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYE-GRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFT  550 (868)
T ss_dssp             CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHH-CCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTS
T ss_pred             CCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHhcCCCEEEEcCcCCccchh
Confidence            5799999999999999999999999999999999999999877 679999999999999999999999999999999999


Q ss_pred             ccceeeeccccccccccCCCcEEecCCCc------cccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccc
Q psy9579         571 HRHAILYNQDYQYSEKETDISTYIPLHNV------SKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFA  644 (887)
Q Consensus       571 hRHav~~dq~~~~~~~~~~~~~~~pl~~l------~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~  644 (887)
                      |||||||||+        +|++|.||++|      .+++|++||+||||||++++|||+|||+.|++++||||+|||||+
T Consensus       551 ~rh~v~~d~~--------~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~dF~  622 (868)
T 2yic_A          551 QRHAVIVDRK--------TGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFV  622 (868)
T ss_dssp             CCCSSEECTT--------TCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGG
T ss_pred             hcchhccccC--------CCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEEEehHHHH
Confidence            9999999999        99999999999      888999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHhhHHHHhcCccCcEEEecccCCCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCC
Q psy9579         645 NGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIR  724 (887)
Q Consensus       645 ~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r  724 (887)
                      |+||++||||+++++.||++++||||++||||+|+||+|||+|+|+|||||++|||+|++||||+|+|||||+|+++++|
T Consensus       623 ~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~~G~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr~a~~~~~~  702 (868)
T 2yic_A          623 NGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQ  702 (868)
T ss_dssp             GGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSSSCTTSSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHHHHHHHSSCC
T ss_pred             hhHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCCChhhcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEccccccccCCCCCccccCCCCcceeecccccc---ccCCCCceEEEEEechHHHHHHHHHHHcCCCcEEEEecc
Q psy9579         725 KPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDD---IIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIE  801 (887)
Q Consensus       725 ~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~---~~~~~~v~r~i~~~G~~~~~l~~~~~~~~~~~v~vi~l~  801 (887)
                      +|||||+||+|||++.++|+++++++|.|+++|+++.+   ++++++|+|||||||++||+|++++++.|.++++|||+|
T Consensus       703 ~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~Ii~~G~~~~~l~aa~~~~g~i~v~VIdl~  782 (868)
T 2yic_A          703 RPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKIYYELAARKAKENREDVAIVRIE  782 (868)
T ss_dssp             CCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEEEEECSTHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred             CcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEEEEEecHHHHHHHHHHHhCCCCCEEEEEee
Confidence            99999999999999999988888877889999998875   568899999999999999999998877775799999999


Q ss_pred             ccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhcc-CCcEEEecCCCCCCCCCCchhhHHHHHHHH
Q psy9579         802 QLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNS-TQKLIYVGRSCSASPASGYYSKHCKEQITL  880 (887)
Q Consensus       802 ~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~-~~~~~~~gr~~~~~~a~g~~~~h~~~~~~i  880 (887)
                      ||+|||.++|.++++||++++++|||||||+|+|+|++|.++|.+.+.. ..+++|+||+++++||+|+.+.|.+||++|
T Consensus       783 ~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~~~~l~~~v~~vg~~d~~~p~~g~~~~h~~~~~~~  862 (868)
T 2yic_A          783 QLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSSKVHAVEQQEI  862 (868)
T ss_dssp             EEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHCHHHHTTCEEEEECCCSSSSCSCHHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHHhhhcCCCeEEeccCCcCCCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999997642 368999999999999999999999999999


Q ss_pred             HHHhhc
Q psy9579         881 LNNAFL  886 (887)
Q Consensus       881 ~~~a~~  886 (887)
                      |++||+
T Consensus       863 ~~~a~~  868 (868)
T 2yic_A          863 LDTAFG  868 (868)
T ss_dssp             HHHHTC
T ss_pred             HHHHhC
Confidence            999984

PyMOL of 2yic

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}	Back alignment and structure

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*	Back alignment and structure

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...	Back alignment and structure

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A	Back alignment and structure

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*	Back alignment and structure

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*	Back alignment and structure

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*	Back alignment and structure

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}	Back alignment and structure

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*	Back alignment and structure

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}	Back alignment and structure

>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B	Back alignment and structure

>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B	Back alignment and structure

>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...	Back alignment and structure

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*	Back alignment and structure

>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*	Back alignment and structure

>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2	Back alignment and structure

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}	Back alignment and structure

>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}	Back alignment and structure

>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1	Back alignment and structure

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1	Back alignment and structure

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*	Back alignment and structure

>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*	Back alignment and structure

>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*	Back alignment and structure

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}	Back alignment and structure

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*	Back alignment and structure

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*	Back alignment and structure

>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*	Back alignment and structure

>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}	Back alignment and structure

>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*	Back alignment and structure

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*	Back alignment and structure

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*	Back alignment and structure

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*	Back alignment and structure

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}	Back alignment and structure

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*	Back alignment and structure

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*	Back alignment and structure

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*	Back alignment and structure

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*	Back alignment and structure

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*	Back alignment and structure

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*	Back alignment and structure

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9	Back alignment and structure

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}	Back alignment and structure

>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*	Back alignment and structure

>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*	Back alignment and structure

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*	Back alignment and structure

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*	Back alignment and structure

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*	Back alignment and structure

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*	Back alignment and structure

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*	Back alignment and structure

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*	Back alignment and structure

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}	Back alignment and structure

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*	Back alignment and structure

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}	Back alignment and structure

>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}	Back alignment and structure

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		887
d1umda_		362	c.36.1.11 (A:) Branched-chain alpha-keto acid dehy	4e-13

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

 Score = 69.5 bits (169), Expect = 4e-13
 Identities = 31/217 (14%), Positives = 66/217 (30%), Gaps = 7/217 (3%)

Query: 241 YHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHG 300
                +     P      +L F      I + V   +  A   +        V       
Sbjct: 113 TKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAV----CTF 168

Query: 301 DAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEA 360
               + +G     +NF+ +        + I  NN    +        +    D       
Sbjct: 169 GDGATSEGDWYAGINFAAVQGAPA---VFIAENNFYAISVDYRHQTHSPTIADKAHAFGI 225

Query: 361 PVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKI 420
           P + V+G D  +   V K AVE   + +   ++ +  +R   H+  D  S  +P      
Sbjct: 226 PGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAF 285

Query: 421 FKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMIN 457
           ++       +   L+ + +  +   E++ +E    + 
Sbjct: 286 WRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELE 322

PyMOL of d1umda_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		887
d1umda_		362	Branched-chain alpha-keto acid dehydrogenase, PP m	100.0
d2bfda1		395	Branched-chain alpha-keto acid dehydrogenase, PP m	100.0
d1qs0a_		407	2-oxoisovalerate dehydrogenase (E1B), PP module {P	100.0
d2ozla1		361	E1-beta subunit of pyruvate dehydrogenase (PP modu	100.0
d1w85a_		365	Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st	100.0
d1w85b1		192	Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d	100.0
d2bfdb1		203	Branched-chain alpha-keto acid dehydrogenase, Pyr	100.0
d1ik6a1		191	E1-beta subunit of pyruvate dehydrogenase, Pyr mod	100.0
d2ozlb1		192	E1-beta subunit of pyruvate dehydrogenase, Pyr mod	100.0
d1qs0b1		204	2-oxoisovalerate dehydrogenase (E1B), Pyr module {	100.0
d1umdb1		186	Branched-chain alpha-keto acid dehydrogenase, Pyr	99.94
d1qs0b2		134	2-oxoisovalerate dehydrogenase E1b, C-domain {Pseu	99.52
d2bfdb2		138	Branched-chain alpha-keto acid dehydrogenase {Huma	99.45
d1ik6a2		135	E1-beta subunit of pyruvate dehydrogenase, C-domai	99.44
d1umdb2		137	Branched-chain alpha-keto acid dehydrogenase {Ther	99.38
d2ozlb2		138	E1-beta subunit of pyruvate dehydrogenase, C-domai	99.36
d1w85b2		132	Pyruvate dehydrogenase E1-beta, PdhB, C-terminal d	99.33
d2r8oa2		331	Transketolase (TK), PP module {Escherichia coli [T	99.13
d1r9ja2		336	Transketolase (TK), PP module {Leishmania mexicana	99.01
d1gpua1		335	Transketolase (TK), PP module {Baker's yeast (Sacc	98.96
d2djia3		229	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	98.95
d1itza1		338	Transketolase (TK), PP module {Maize (Zea mays) [T	98.76
d1q6za3		183	Benzoylformate decarboxylase {Pseudomonas putida [	98.54
d2ez9a3		228	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	98.44
d2ihta3		198	Carboxyethylarginine synthase {Streptomyces clavul	98.4
d1ovma3		196	Indole-3-pyruvate decarboxylase {Enterobacter cloa	98.28
d2ieaa2		415	Pyruvate dehydrogenase E1 component, PP module {Es	98.27
d1ybha3		208	Acetohydroxyacid synthase catalytic subunit {Thale	98.23
d1ozha3		192	Catabolic acetolactate synthase {Klebsiella pneumo	98.18
d2ji7a3		183	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	98.18
d1pvda3		196	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	98.17
d1zpda3		204	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	98.08
d1t9ba3		227	Acetohydroxyacid synthase catalytic subunit {Baker	98.0
d1gpua2		197	Transketolase (TK), Pyr module {Baker's yeast (Sac	97.88
d2c42a3		157	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I	97.72
d1itza2		192	Transketolase (TK), Pyr module {Maize (Zea mays) [	97.54
d1r9ja1		190	Transketolase (TK), Pyr module {Leishmania mexican	97.5
d2r8oa1		195	Transketolase (TK), Pyr module {Escherichia coli [	96.99
d2c42a2		447	Pyruvate-ferredoxin oxidoreductase, PFOR, domains	93.92
d2r8oa3		136	Transketolase (TK), C-domain {Escherichia coli [Ta	89.09
d1gpua3		146	Transketolase (TK), C-domain {Baker's yeast (Sacch	88.7
d2c42a1		257	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I	87.99
d2c42a1		257	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I	81.76

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1e-65  Score=570.13  Aligned_cols=311  Identities=16%  Similarity=0.133  Sum_probs=284.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---ccCCchhHHHHHHHHHHHhhcCCCC-cEEecCCccchHHHH
Q psy9579         136 TPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRF---SLEGSESFILSLNEIIQHSGKRGIR-EIVIGMAHRGRLNVL  211 (887)
Q Consensus       136 ~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krf---g~eG~Ea~~vgl~~~i~~a~al~~~-D~v~gm~HRgr~~~L  211 (887)
                      .+.+|+|+++++|+.|+++|.||+++..+|.++++.   +..||||+++|+      +.+++++ ||+++ +||+|+++|
T Consensus        25 ~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~~~~~~~~~GqEA~~vg~------~~al~~~~D~~~~-~yR~h~~~l   97 (362)
T d1umda_          25 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAI------AHAIRPGFDWVFP-YYRDHGLAL   97 (362)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHH------HHHSCTTTSEEEC-CTTTHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcceeeCCCCHHHHHHHH------HHHcCCCCCeEEe-ccccHHHHH
Confidence            478999999999999999999999999999999883   239999999999      9999986 99999 999999999


Q ss_pred             HHHhCCCHHHHHHHccCCCCCCCCCCCcccccccccccCCCCceeEEE-----eecCCCcccccccccchhHHHHHhhcc
Q psy9579         212 VNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLS-----LAFNPSHLEIINPVVEGSAKARMERRD  286 (887)
Q Consensus       212 ~n~~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl~-----l~~npShle~v~Pva~G~A~A~q~~~~  286 (887)
                        ++|+|+..+|+|++|+.+|.            |   +|+|++||+.     +....++++.+.|+|+|.|+|.|++++
T Consensus        98 --a~G~~~~~~~ae~~gk~~g~------------~---~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~~~  160 (362)
T d1umda_          98 --ALGIPLKELLGQMLATKADP------------N---KGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRT  160 (362)
T ss_dssp             --HHTCCHHHHHHHHHTBTTCT------------T---TTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTC
T ss_pred             --HHHhhHHHHHHHHhcccCCC------------c---ccccccccccccccCcccccccccccchHHHHHHHhhhcccc
Confidence              99999999999999999883            4   4555566551     123446789999999999999999987


Q ss_pred             CCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEc
Q psy9579         287 DKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVN  366 (887)
Q Consensus       287 ~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~Vd  366 (887)
                           +.|++|++||||+ +||+||||||||++  |++| +||||+||+|||||+.+.+++..+++++|++||||+++||
T Consensus       161 -----~~v~v~~~GDGa~-~eG~f~Ealn~A~~--~~lP-vifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vD  231 (362)
T d1umda_         161 -----GQVAVCTFGDGAT-SEGDWYAGINFAAV--QGAP-AVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVD  231 (362)
T ss_dssp             -----CCCEEEEEETGGG-GSHHHHHHHHHHHH--TTCS-EEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEE
T ss_pred             -----cceeeeeccCCcc-cCCchHHHHHHhhh--ccCC-eeeeeeecccccccccccccccchhhhhhhhheeeeeEec
Confidence                 8999999999999 99999999999999  9999 9999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHH
Q psy9579         367 GDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESE  446 (887)
Q Consensus       367 G~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~  446 (887)
                      |||+++|+.+++.|++++|+++||+|||+.|||++||+++||+..|+|..+...|+.+||+.+|+++|+++|++|+++++
T Consensus       232 GnDv~~v~~a~~~Ai~~~R~g~gP~lIE~~tyR~~gHs~~Dd~~~YR~~~Ei~~w~~~DPi~~~~~~L~~~g~~se~e~~  311 (362)
T d1umda_         232 GMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEE  311 (362)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHHTTCHHHHHHHHHHTTTCCCHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHhcCCCEEEEcccccccCCCccccchhhcchhhhHHHhcCCHHHHHHHHHHHCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999998888888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccc
Q psy9579         447 NMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFL  483 (887)
Q Consensus       447 ~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~  483 (887)
                      +|+++++++|++++++|++.|+|+    .+..+.+++
T Consensus       312 ~i~~ei~~~V~~a~~~A~~~p~P~----~~~l~~~VY  344 (362)
T d1umda_         312 DVREEIRAELERGLKEAEEAGPVP----PEWMFEDVF  344 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCBCC----GGGGGTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCC----HHHHHhccc
Confidence            999999999999999999988654    234455553

PyMOL of d1umda_

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]}	Back information, alignment and structure

>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}	Back information, alignment and structure

>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}	Back information, alignment and structure

>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}	Back information, alignment and structure

>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}	Back information, alignment and structure

>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}	Back information, alignment and structure

>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}	Back information, alignment and structure

>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}	Back information, alignment and structure

>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}	Back information, alignment and structure

>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]}	Back information, alignment and structure

>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}	Back information, alignment and structure

>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}	Back information, alignment and structure

>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}	Back information, alignment and structure