Psyllid ID: psy9589

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MDIFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI
Secondary Structure (PSIPRED)
ccHHcHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEcccccccccHHHHHHHHHcccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEcccccccccHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccHHHcc
Coil and Loop (DISEMBL)
MDIFITVLSLaencpnlyYLCLSGCSQLTDASLIVLAQRCHQLHtlevascsqfTDTGFQALARGLLDSAVLSlaencpnlyYLCLSGCSQLTDASLIVLAQRCHQLHtlevascsqftDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGcprlekli
Flexible Loop (DISEMBL)
MDIFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLalgcprlekli
Low Complexity Region (SEG)
MDIFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI
Disordered region (IsUnstruct)
**IFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPR*****
Disordered Region (DISOPRED)
MDIFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI
Disordered Region (DISEMBL)
MDIFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI
Disordered Region (DISPRO)
**IFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLE*LI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
A6H779	423	F-box/LRR-repeat protein	yes	N/A	0.883	0.340	0.493	2e-31
Q8BH16	423	F-box/LRR-repeat protein	yes	N/A	0.883	0.340	0.480	3e-31
Q5R3Z8	423	F-box/LRR-repeat protein	yes	N/A	0.883	0.340	0.480	4e-31
Q9UKC9	423	F-box/LRR-repeat protein	yes	N/A	0.883	0.340	0.480	5e-31
Q9CZV8	436	F-box/LRR-repeat protein	no	N/A	0.883	0.330	0.480	1e-30
Q96IG2	436	F-box/LRR-repeat protein	no	N/A	0.883	0.330	0.480	1e-30
Q58DG6	436	F-box/LRR-repeat protein	no	N/A	0.883	0.330	0.480	1e-30
P34284	466	Uncharacterized F-box/LRR	yes	N/A	0.938	0.328	0.347	5e-22
Q9QZH7	276	F-box/LRR-repeat protein	no	N/A	0.932	0.550	0.337	6e-19
C8V4D4	585	SCF E3 ubiquitin ligase c	yes	N/A	0.895	0.249	0.325	5e-16

>sp|A6H779|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1

 Score =  134 bits (338), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 91/156 (58%), Gaps = 12/156 (7%)

Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
           V +L   C  L  L L GC+QL D +L  +   CH+L +L + SCS+ TD G   L RG 
Sbjct: 174 VEALVRGCRGLRALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRVTDDGVVQLCRG- 232

Query: 67  LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
                      CP L  LCLSGC  LTDASL  LA  C +L  LE A CS  TD GF  L
Sbjct: 233 -----------CPRLQALCLSGCGSLTDASLTALALNCPRLQILEAARCSHLTDAGFTLL 281

Query: 127 ARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           ARNC  L KMDLEEC+LITD TL  L++ CP+L+ L
Sbjct: 282 ARNCHDLEKMDLEECILITDRTLTQLSIHCPKLQAL 317

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.
Bos taurus (taxid: 9913)

>sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1

 Score =  134 bits (337), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 92/156 (58%), Gaps = 12/156 (7%)

Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
           + +L   C  L  L L GC+QL D +L  +   CH+L +L + SCS+ TD G   + RG 
Sbjct: 174 IEALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRG- 232

Query: 67  LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
                      C  L  LCLSGCS LTDASL  L   C +L  LE A CS  TD GF  L
Sbjct: 233 -----------CHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCSHLTDAGFTLL 281

Query: 127 ARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           ARNC  L KMDLEECVLITD+TL+ L++ CP+L+ L
Sbjct: 282 ARNCHELEKMDLEECVLITDSTLVQLSIHCPKLQAL 317

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Mus musculus (taxid: 10090)

>sp|Q5R3Z8|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1

 Score =  133 bits (335), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 92/156 (58%), Gaps = 12/156 (7%)

Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
           + +L   C  L  L L GC+QL D +L  +   CH+L +L + SCS+ TD G   + RG 
Sbjct: 174 IEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRG- 232

Query: 67  LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
                      C  L  LCLSGCS LTDASL  L   C +L  LE A CS  TD GF  L
Sbjct: 233 -----------CHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLL 281

Query: 127 ARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           ARNC  L KMDLEEC+LITD+TLI L++ CP+L+ L
Sbjct: 282 ARNCHELEKMDLEECILITDSTLIQLSIHCPKLQAL 317

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Pongo abelii (taxid: 9601)

>sp|Q9UKC9|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3

 Score =  133 bits (335), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 92/156 (58%), Gaps = 12/156 (7%)

Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
           + +L   C  L  L L GC+QL D +L  +   CH+L +L + SCS+ TD G   + RG 
Sbjct: 174 IEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRG- 232

Query: 67  LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
                      C  L  LCLSGCS LTDASL  L   C +L  LE A CS  TD GF  L
Sbjct: 233 -----------CHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLL 281

Query: 127 ARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           ARNC  L KMDLEEC+LITD+TLI L++ CP+L+ L
Sbjct: 282 ARNCHELEKMDLEECILITDSTLIQLSIHCPKLQAL 317

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Binds to hepatitis C virus non-structural protein 5A (NS5A) in a reaction crucial for hepatitis C virus RNA replication.

Homo sapiens (taxid: 9606)

>sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3

 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 90/156 (57%), Gaps = 12/156 (7%)

Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
           + +L   C  L  L L GC+QL D +L  +   C +L TL + +C Q TD G   + RG 
Sbjct: 187 IQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRG- 245

Query: 67  LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
                      C  L  LC SGCS +TDA L  L Q C +L  LEVA CSQ TD GF  L
Sbjct: 246 -----------CHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTL 294

Query: 127 ARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           ARNC  L KMDLEECV ITD+TLI L++ CPRL+ L
Sbjct: 295 ARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVL 330

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Isoform 3 regulates neural transmission by binding and ubiquitinating RIMS1, a modulator of presynaptic plasticity.

Mus musculus (taxid: 10090)

>sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2

 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 90/156 (57%), Gaps = 12/156 (7%)

Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
           + +L   C  L  L L GC+QL D +L  +   C +L TL + +C Q TD G   + RG 
Sbjct: 187 IQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRG- 245

Query: 67  LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
                      C  L  LC SGCS +TDA L  L Q C +L  LEVA CSQ TD GF  L
Sbjct: 246 -----------CHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTL 294

Query: 127 ARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           ARNC  L KMDLEECV ITD+TLI L++ CPRL+ L
Sbjct: 295 ARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVL 330

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Homo sapiens (taxid: 9606)

>sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2

 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 90/156 (57%), Gaps = 12/156 (7%)

Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
           + +L   C  L  L L GC+QL D +L  +   C +L TL + +C Q TD G   + RG 
Sbjct: 187 IQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRG- 245

Query: 67  LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
                      C  L  LC SGCS +TDA L  L Q C +L  LEVA CSQ TD GF  L
Sbjct: 246 -----------CHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTL 294

Query: 127 ARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           ARNC  L KMDLEECV ITD+TLI L++ CPRL+ L
Sbjct: 295 ARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVL 330

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Bos taurus (taxid: 9913)

>sp|P34284|YKK7_CAEEL Uncharacterized F-box/LRR-repeat protein C02F5.7 OS=Caenorhabditis elegans GN=C02F5.7 PE=4 SV=3

 Score =  103 bits (257), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 86/167 (51%), Gaps = 14/167 (8%)

Query: 10  LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR----- 64
           + + CPNL YL +S C  + D  + ++   C  L TL +  C   T+  F ++       
Sbjct: 196 IGDGCPNLSYLNISWCDAIQDRGVQIILSNCKSLDTLILRGCEGLTENVFGSVEAHMGAI 255

Query: 65  ---------GLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 115
                     L D  V ++A     L YLC+S C+Q++D SL+ L Q  H L  LE++ C
Sbjct: 256 KKLNLLQCFQLTDITVQNIANGATALEYLCMSNCNQISDRSLVSLGQHSHNLKVLELSGC 315

Query: 116 SQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           +   D GF  LAR CR L ++D+E+C LI+D T+  LA  C  L +L
Sbjct: 316 TLLGDNGFIPLARGCRQLERLDMEDCSLISDHTINSLANNCTALREL 362

Caenorhabditis elegans (taxid: 6239)

>sp|Q9QZH7|FXL20_RAT F-box/LRR-repeat protein 20 OS=Rattus norvegicus GN=Fbxl20 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 14/166 (8%)

Query: 9   SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARG--- 65
           + A+NC N+  L L+GC++ TDA+   L++ C +L  L++ASC+  T+   +AL+ G   
Sbjct: 111 TFAQNCRNIEVLSLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPL 170

Query: 66  -----------LLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVAS 114
                      +    + +L   C  L  L L GC+QL D +L  +   C +L TL + +
Sbjct: 171 LEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQT 230

Query: 115 CSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLE 160
           C Q TD G   + R C  L  +    C  ITDA L  L   CPRL 
Sbjct: 231 CLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLR 276

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Rattus norvegicus (taxid: 10116)

>sp|C8V4D4|GRRA_EMENI SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=grrA PE=2 SV=1

 Score = 83.6 bits (205), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 14/160 (8%)

Query: 6   TVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARG 65
           T+  +AENC  L  L ++GC ++TD SLI ++Q C  L  L++   SQ TD         
Sbjct: 205 TLFKVAENCNRLQGLNITGCVKVTDDSLIAVSQNCRLLKRLKLNGVSQVTD--------- 255

Query: 66  LLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQA 125
               A+LS A+NCP++  + L  C  +T+ S+  L      L  L +A C++  D+ F  
Sbjct: 256 ---KAILSFAQNCPSILEIDLQECKLVTNQSVTALMTTLQNLRELRLAHCTEIDDSAFLD 312

Query: 126 LARNCRL--LAKMDLEECVLITDATLIHLALGCPRLEKLI 163
           L R+ ++  L  +DL  C  I D  +  +    PRL  L+
Sbjct: 313 LPRHIQMTSLRILDLTACENIRDEAVERIVSSAPRLRNLV 352

Involved in meiosis and required for ascospore formation. Involved in substrate recognition in ubiquitin-dependent degradation.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
270006862	861	hypothetical protein TcasGA2_TC013252 [T	0.944	0.178	0.535	2e-40
383857505	516	PREDICTED: F-box/LRR-repeat protein 20-l	0.969	0.306	0.523	5e-40
189237655	433	PREDICTED: similar to AGAP007807-PA [Tri	0.944	0.355	0.535	7e-40
307195170	414	F-box/LRR-repeat protein 20 [Harpegnatho	0.969	0.381	0.517	3e-39
328778343	512	PREDICTED: f-box/LRR-repeat protein 20-l	0.969	0.308	0.511	1e-38
380013659	432	PREDICTED: F-box/LRR-repeat protein 20-l	0.969	0.365	0.511	2e-38
307180560	458	F-box/LRR-repeat protein 20 [Camponotus	0.969	0.344	0.511	2e-38
332025721	427	F-box/LRR-repeat protein 20 [Acromyrmex	0.969	0.370	0.511	3e-38
340723820	432	PREDICTED: f-box/LRR-repeat protein 20-l	0.969	0.365	0.505	4e-38
340723816	435	PREDICTED: f-box/LRR-repeat protein 20-l	0.969	0.363	0.505	4e-38

>gi|270006862|gb|EFA03310.1| hypothetical protein TcasGA2_TC013252 [Tribolium castaneum]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 111/168 (66%), Gaps = 14/168 (8%)

Query: 9   SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR---- 64
           +L++ CPNL ++ +S  + +T+  +  LA+ C +L +     C Q T      LAR    
Sbjct: 588 ALSDGCPNLTHINISWSNNVTENGVEALARGCRKLKSFISKGCKQITSRAVICLARFCDQ 647

Query: 65  ----------GLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVAS 114
                      + D AV +LAE CP L+YLCLSGCS LTDASLI LAQ+C  L TLEVA 
Sbjct: 648 LEVVNLLGCCHITDEAVQALAEKCPKLHYLCLSGCSALTDASLIALAQKCTLLSTLEVAG 707

Query: 115 CSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           CSQFTD GFQALAR+CR L KMDL+ECVLITD TLIHLA+GCPR+E L
Sbjct: 708 CSQFTDAGFQALARSCRYLEKMDLDECVLITDNTLIHLAMGCPRIEYL 755

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857505|ref|XP_003704245.1| PREDICTED: F-box/LRR-repeat protein 20-like [Megachile rotundata]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 111/172 (64%), Gaps = 14/172 (8%)

Query: 5   ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALA- 63
           I++  L+E CP L ++ LS C  LTD  +  LA+ C++L +     C Q TD   + LA 
Sbjct: 238 ISLKDLSEGCPLLTHINLSWCELLTDNGVEALARGCNELRSFLCKGCRQLTDRAVKCLAL 297

Query: 64  -------------RGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 110
                        R + D AV  L+E CP L+Y+CLS C  LTDASL+ LAQ C  L  L
Sbjct: 298 YCPNLEAINLHECRNITDDAVRELSEQCPRLHYVCLSNCPNLTDASLVTLAQHCPLLSVL 357

Query: 111 EVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           E  +C+ FTD GFQALA+NCRLL KMDLEEC+LITDATLIHLA+GCPRLEKL
Sbjct: 358 ECVACTHFTDAGFQALAKNCRLLEKMDLEECLLITDATLIHLAMGCPRLEKL 409

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237655|ref|XP_001812041.1| PREDICTED: similar to AGAP007807-PA [Tribolium castaneum]

 Score =  168 bits (425), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 111/168 (66%), Gaps = 14/168 (8%)

Query: 9   SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR---- 64
           +L++ CPNL ++ +S  + +T+  +  LA+ C +L +     C Q T      LAR    
Sbjct: 160 ALSDGCPNLTHINISWSNNVTENGVEALARGCRKLKSFISKGCKQITSRAVICLARFCDQ 219

Query: 65  ----------GLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVAS 114
                      + D AV +LAE CP L+YLCLSGCS LTDASLI LAQ+C  L TLEVA 
Sbjct: 220 LEVVNLLGCCHITDEAVQALAEKCPKLHYLCLSGCSALTDASLIALAQKCTLLSTLEVAG 279

Query: 115 CSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           CSQFTD GFQALAR+CR L KMDL+ECVLITD TLIHLA+GCPR+E L
Sbjct: 280 CSQFTDAGFQALARSCRYLEKMDLDECVLITDNTLIHLAMGCPRIEYL 327

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195170|gb|EFN77163.1| F-box/LRR-repeat protein 20 [Harpegnathos saltator]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/172 (51%), Positives = 109/172 (63%), Gaps = 14/172 (8%)

Query: 5   ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
           I++  L++ CP L ++ LS C  LTD  +  LA+ C +L +     C Q TD   + LAR
Sbjct: 136 ISLKDLSDGCPLLTHINLSWCELLTDNGVEALARGCPELRSFLSKGCRQLTDRAVKCLAR 195

Query: 65  --------------GLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 110
                          + D AV  L+E CP L+Y+CLS C  LTDASL+ LAQ C  L  L
Sbjct: 196 YCPNLEAINLHECRNITDDAVRELSEQCPRLHYVCLSNCPNLTDASLVTLAQHCPLLSVL 255

Query: 111 EVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           E   C+ FTD GFQALA+NCRLL KMDLEEC+LITDATLIHLA+GCPRLEKL
Sbjct: 256 ECVGCTHFTDAGFQALAKNCRLLEKMDLEECLLITDATLIHLAMGCPRLEKL 307

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778343|ref|XP_393319.2| PREDICTED: f-box/LRR-repeat protein 20-like isoform 1 [Apis mellifera]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/172 (51%), Positives = 109/172 (63%), Gaps = 14/172 (8%)

Query: 5   ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
           I++ +L++ C  L ++ LS C  LTD  +  L + C QL +     C Q TD G   LAR
Sbjct: 234 ISMKNLSKGCSLLTHINLSWCELLTDNGVEALVRGCRQLRSFLCKGCRQLTDRGVTCLAR 293

Query: 65  --------------GLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 110
                          + D AV  L+E CP L+Y+CLS C  LTDASL+ LAQ C  L  L
Sbjct: 294 YCTNLEAINLHECRNITDDAVRELSEQCPRLHYVCLSNCPNLTDASLVTLAQHCPLLSVL 353

Query: 111 EVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           E  +C+ FTD GFQALA+NCRLL KMDLEEC+LITDATLIHL++GCPRLEKL
Sbjct: 354 ECVACTHFTDAGFQALAKNCRLLEKMDLEECLLITDATLIHLSMGCPRLEKL 405

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013659|ref|XP_003690868.1| PREDICTED: F-box/LRR-repeat protein 20-like [Apis florea]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/172 (51%), Positives = 109/172 (63%), Gaps = 14/172 (8%)

Query: 5   ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
           I++ +L++ C  L ++ LS C  LTD  +  L + C QL +     C Q TD G   LAR
Sbjct: 154 ISMKNLSKGCSLLTHINLSWCELLTDNGVEALVRGCRQLRSFLCKGCRQLTDRGVTCLAR 213

Query: 65  --------------GLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 110
                          + D AV  L+E CP L+Y+CLS C  LTDASL+ LAQ C  L  L
Sbjct: 214 YCTNLEAINLHECRNITDDAVRELSEQCPRLHYVCLSNCPNLTDASLVTLAQHCPLLSVL 273

Query: 111 EVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           E  +C+ FTD GFQALA+NCRLL KMDLEEC+LITDATLIHL++GCPRLEKL
Sbjct: 274 ECVACTHFTDAGFQALAKNCRLLEKMDLEECLLITDATLIHLSMGCPRLEKL 325

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180560|gb|EFN68516.1| F-box/LRR-repeat protein 20 [Camponotus floridanus]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/172 (51%), Positives = 108/172 (62%), Gaps = 14/172 (8%)

Query: 5   ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
           +++  LA  CP L ++ LS C  LTD  +  LA+ C +L +     C Q TD     LAR
Sbjct: 154 MSLKDLAAGCPLLTHINLSWCELLTDNGIDALAKGCPELRSFLSKGCRQLTDKAVMCLAR 213

Query: 65  G--------------LLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 110
                          + D  V  L+E CP L+Y+CLS C  LTDA+LI LAQ C  L+ L
Sbjct: 214 NCPNLEAINLHECRNITDDGVRELSERCPRLHYVCLSNCPNLTDATLISLAQHCPLLNIL 273

Query: 111 EVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           E  +C+ FTDTGFQALARNC+LL KMDLEEC+LITDATL HLA+GCPRLEKL
Sbjct: 274 ECVACTHFTDTGFQALARNCKLLEKMDLEECLLITDATLTHLAMGCPRLEKL 325

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025721|gb|EGI65879.1| F-box/LRR-repeat protein 20 [Acromyrmex echinatior]

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/172 (51%), Positives = 108/172 (62%), Gaps = 14/172 (8%)

Query: 5   ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
           +++  LA  CP L ++ LS C  LTD  +  LA+ C +L +     C Q TD     LAR
Sbjct: 149 MSLKDLAAGCPLLTHINLSWCELLTDNGVDALAKGCPELRSFLSKGCRQLTDKAVMCLAR 208

Query: 65  --------------GLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 110
                          + D  V  L+E CP L+Y+CLS C  LTDA+LI LAQ C  L+ L
Sbjct: 209 YCPNLEAINLHECRNITDDGVRELSERCPRLHYVCLSNCPNLTDATLISLAQHCPLLNVL 268

Query: 111 EVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           E  +C+ FTDTGFQALARNC+LL KMDLEEC+LITDATL HLA+GCPRLEKL
Sbjct: 269 ECVACTHFTDTGFQALARNCKLLEKMDLEECLLITDATLTHLAMGCPRLEKL 320

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723820|ref|XP_003400286.1| PREDICTED: f-box/LRR-repeat protein 20-like isoform 3 [Bombus terrestris]

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 87/172 (50%), Positives = 108/172 (62%), Gaps = 14/172 (8%)

Query: 5   ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
           I++  L+  CP L ++ LS C  LTD  +  LA+ C +L +     C Q TD   + LAR
Sbjct: 154 ISLKDLSNGCPLLTHINLSWCELLTDKGVEALARGCPELRSFLCKGCRQLTDRAVKCLAR 213

Query: 65  --------------GLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 110
                          + D AV  L+E CP L+Y+CLS C  LTDASL+ LA+ C  L  L
Sbjct: 214 YCHNLEAINLHECRNITDDAVRELSERCPRLHYVCLSNCPNLTDASLVTLAEHCPLLSVL 273

Query: 111 EVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           E  +C+ FTDTGFQALA+NCRLL KMDLEECVLITD TL+HLA+GCP LEKL
Sbjct: 274 ECVACTHFTDTGFQALAKNCRLLEKMDLEECVLITDITLVHLAMGCPGLEKL 325

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723816|ref|XP_003400284.1| PREDICTED: f-box/LRR-repeat protein 20-like isoform 1 [Bombus terrestris] gi|350424929|ref|XP_003493958.1| PREDICTED: F-box/LRR-repeat protein 20-like isoform 2 [Bombus impatiens]

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 87/172 (50%), Positives = 108/172 (62%), Gaps = 14/172 (8%)

Query: 5   ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
           I++  L+  CP L ++ LS C  LTD  +  LA+ C +L +     C Q TD   + LAR
Sbjct: 157 ISLKDLSNGCPLLTHINLSWCELLTDKGVEALARGCPELRSFLCKGCRQLTDRAVKCLAR 216

Query: 65  --------------GLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 110
                          + D AV  L+E CP L+Y+CLS C  LTDASL+ LA+ C  L  L
Sbjct: 217 YCHNLEAINLHECRNITDDAVRELSERCPRLHYVCLSNCPNLTDASLVTLAEHCPLLSVL 276

Query: 111 EVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           E  +C+ FTDTGFQALA+NCRLL KMDLEECVLITD TL+HLA+GCP LEKL
Sbjct: 277 ECVACTHFTDTGFQALAKNCRLLEKMDLEECVLITDITLVHLAMGCPGLEKL 328

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
RGD|1562243	422	Fbxl2 "F-box and leucine-rich	0.871	0.336	0.493	2.9e-32
MGI|MGI:1919429	423	Fbxl2 "F-box and leucine-rich	0.871	0.335	0.487	2.9e-32
UNIPROTKB|A6H779	423	FBXL2 "F-box/LRR-repeat protei	0.883	0.340	0.493	2.9e-32
UNIPROTKB|F1PWK1	422	FBXL2 "Uncharacterized protein	0.871	0.336	0.493	3.7e-32
UNIPROTKB|Q9UKC9	423	FBXL2 "F-box/LRR-repeat protei	0.871	0.335	0.487	6e-32
UNIPROTKB|Q5R3Z8	423	FBXL2 "F-box/LRR-repeat protei	0.871	0.335	0.487	6e-32
UNIPROTKB|F1NHD2	423	FBXL2 "Uncharacterized protein	0.871	0.335	0.480	1.3e-31
MGI|MGI:1919444	436	Fbxl20 "F-box and leucine-rich	0.883	0.330	0.480	2.6e-31
UNIPROTKB|Q58DG6	436	FBXL20 "F-box/LRR-repeat prote	0.883	0.330	0.480	2.6e-31
UNIPROTKB|Q96IG2	436	FBXL20 "F-box/LRR-repeat prote	0.883	0.330	0.480	2.6e-31

RGD|1562243 Fbxl2 "F-box and leucine-rich repeat protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 76/154 (49%), Positives = 91/154 (59%)

Query:     9 SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLD 68
             +L   C  L  L L GC+QL D +L  +   CH+L +L + SCS+ TD G   + RG   
Sbjct:   175 ALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRG--- 231

Query:    69 SAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 128
                      C  L  LCLSGCS LTDASL  L   C +L  LE A CS  TD GF  LAR
Sbjct:   232 ---------CHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCSHLTDAGFTLLAR 282

Query:   129 NCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
             NC  L KMDLEECVLITD+TLI L++ CP+L+ L
Sbjct:   283 NCHDLEKMDLEECVLITDSTLIQLSIHCPKLQAL 316

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0006513 "protein monoubiquitination" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IEA;ISO

MGI|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 75/154 (48%), Positives = 91/154 (59%)

Query:     9 SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLD 68
             +L   C  L  L L GC+QL D +L  +   CH+L +L + SCS+ TD G   + RG   
Sbjct:   176 ALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRG--- 232

Query:    69 SAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 128
                      C  L  LCLSGCS LTDASL  L   C +L  LE A CS  TD GF  LAR
Sbjct:   233 ---------CHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCSHLTDAGFTLLAR 283

Query:   129 NCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
             NC  L KMDLEECVLITD+TL+ L++ CP+L+ L
Sbjct:   284 NCHELEKMDLEECVLITDSTLVQLSIHCPKLQAL 317

GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0006513 "protein monoubiquitination" evidence=IGI;IMP

GO:0016020 "membrane" evidence=ISO

UNIPROTKB|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 77/156 (49%), Positives = 91/156 (58%)

Query:     7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
             V +L   C  L  L L GC+QL D +L  +   CH+L +L + SCS+ TD G   L RG 
Sbjct:   174 VEALVRGCRGLRALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRVTDDGVVQLCRG- 232

Query:    67 LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
                        CP L  LCLSGC  LTDASL  LA  C +L  LE A CS  TD GF  L
Sbjct:   233 -----------CPRLQALCLSGCGSLTDASLTALALNCPRLQILEAARCSHLTDAGFTLL 281

Query:   127 ARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
             ARNC  L KMDLEEC+LITD TL  L++ CP+L+ L
Sbjct:   282 ARNCHDLEKMDLEECILITDRTLTQLSIHCPKLQAL 317

GO:0016020 "membrane" evidence=ISS

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

UNIPROTKB|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 76/154 (49%), Positives = 92/154 (59%)

Query:     9 SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLD 68
             +L   C  L  L L GC+QL D +L  +   CH+L +L + SCS+ TD G   + RG   
Sbjct:   175 ALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRG--- 231

Query:    69 SAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 128
                      C  L  LCLSGCS LTDASL  LA  C +L  LE A CS  TD GF  LAR
Sbjct:   232 ---------CHRLQALCLSGCSNLTDASLTALALNCPRLQILEAARCSHLTDAGFTLLAR 282

Query:   129 NCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
             NC  L KMDLEEC+LITD+TLI L++ CP+L+ L
Sbjct:   283 NCHDLEKMDLEECILITDSTLIQLSVHCPKLQAL 316

GO:0016020 "membrane" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 75/154 (48%), Positives = 91/154 (59%)

Query:     9 SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLD 68
             +L   C  L  L L GC+QL D +L  +   CH+L +L + SCS+ TD G   + RG   
Sbjct:   176 ALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRG--- 232

Query:    69 SAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 128
                      C  L  LCLSGCS LTDASL  L   C +L  LE A CS  TD GF  LAR
Sbjct:   233 ---------CHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLAR 283

Query:   129 NCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
             NC  L KMDLEEC+LITD+TLI L++ CP+L+ L
Sbjct:   284 NCHELEKMDLEECILITDSTLIQLSIHCPKLQAL 317

GO:0005516 "calmodulin binding" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0006508 "proteolysis" evidence=TAS

UNIPROTKB|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 75/154 (48%), Positives = 91/154 (59%)

Query:     9 SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLD 68
             +L   C  L  L L GC+QL D +L  +   CH+L +L + SCS+ TD G   + RG   
Sbjct:   176 ALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRG--- 232

Query:    69 SAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 128
                      C  L  LCLSGCS LTDASL  L   C +L  LE A CS  TD GF  LAR
Sbjct:   233 ---------CHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLAR 283

Query:   129 NCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
             NC  L KMDLEEC+LITD+TLI L++ CP+L+ L
Sbjct:   284 NCHELEKMDLEECILITDSTLIQLSIHCPKLQAL 317

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 74/154 (48%), Positives = 91/154 (59%)

Query:     9 SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLD 68
             +L + C  L  L L GC+QL D +L  +   CH+L  L + SC+Q +D G   + RG   
Sbjct:   176 ALVKGCSGLKALFLRGCTQLEDEALKHIQNHCHELAILNLQSCTQISDEGIVKICRG--- 232

Query:    69 SAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 128
                      C  L  LC+SGC  LTDASL  L   C +L  LE A CSQ TD GF  LAR
Sbjct:   233 ---------CHRLQSLCVSGCCNLTDASLTALGLNCPRLKILEAARCSQLTDAGFTLLAR 283

Query:   129 NCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
             NC  L KMDLEECVLITD+TLI L++ CP+L+ L
Sbjct:   284 NCHELEKMDLEECVLITDSTLIQLSIHCPKLQAL 317

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 75/156 (48%), Positives = 90/156 (57%)

Query:     7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
             + +L   C  L  L L GC+QL D +L  +   C +L TL + +C Q TD G   + RG 
Sbjct:   187 IQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRG- 245

Query:    67 LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
                        C  L  LC SGCS +TDA L  L Q C +L  LEVA CSQ TD GF  L
Sbjct:   246 -----------CHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTL 294

Query:   127 ARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
             ARNC  L KMDLEECV ITD+TLI L++ CPRL+ L
Sbjct:   295 ARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVL 330

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 75/156 (48%), Positives = 90/156 (57%)

Query:     7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
             + +L   C  L  L L GC+QL D +L  +   C +L TL + +C Q TD G   + RG 
Sbjct:   187 IQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRG- 245

Query:    67 LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
                        C  L  LC SGCS +TDA L  L Q C +L  LEVA CSQ TD GF  L
Sbjct:   246 -----------CHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTL 294

Query:   127 ARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
             ARNC  L KMDLEECV ITD+TLI L++ CPRL+ L
Sbjct:   295 ARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVL 330

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 75/156 (48%), Positives = 90/156 (57%)

Query:     7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
             + +L   C  L  L L GC+QL D +L  +   C +L TL + +C Q TD G   + RG 
Sbjct:   187 IQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRG- 245

Query:    67 LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
                        C  L  LC SGCS +TDA L  L Q C +L  LEVA CSQ TD GF  L
Sbjct:   246 -----------CHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTL 294

Query:   127 ARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
             ARNC  L KMDLEECV ITD+TLI L++ CPRL+ L
Sbjct:   295 ARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVL 330

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	163
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	2e-18
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	4e-17
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	5e-13
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	9e-11

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 78.5 bits (194), Expect = 2e-18
 Identities = 50/153 (32%), Positives = 67/153 (43%), Gaps = 19/153 (12%)

Query: 13  NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVL 72
           NC  L  L L G   + D  LI LAQ C  L  L++ +C   TD+G  ALA         
Sbjct: 50  NCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALAT-------- 101

Query: 73  SLAENCPNLYYLCLS---GCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARN 129
               NCP L  + L        +TD SL  L + C  L T+  A C   TD G   LA  
Sbjct: 102 ----NCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC-DVTDKGVWELASG 156

Query: 130 C-RLLAKMDLEECVLITDATLIHL--ALGCPRL 159
           C + L ++ L  C  +TD ++  +  +   P L
Sbjct: 157 CSKSLERLSLNNCRNLTDQSIPAILASNYFPNL 189

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 74.7 bits (184), Expect = 4e-17
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
           +++LA++CPNL  L L  C  +TD+ ++ LA  C +L T+ +         G       +
Sbjct: 70  LIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINL---------GRHRNGHLI 120

Query: 67  LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRC-HQLHTLEVASCSQFTDTGFQA 125
            D ++ +L +NC  L  +  +GC  +TD  +  LA  C   L  L + +C   TD    A
Sbjct: 121 TDVSLSALGKNCTFLQTVGFAGC-DVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPA 179

Query: 126 L--ARNCRLLAKMDLEECVLITD 146
           +  +     L+ ++   C LITD
Sbjct: 180 ILASNYFPNLSVLEFRGCPLITD 202

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 63.9 bits (156), Expect = 5e-13
 Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 77  NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKM 136
           NC  L  L L G   + D  LI LAQ C  L  L++ +C   TD+G  ALA NC  L  +
Sbjct: 50  NCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTI 109

Query: 137 DL---EECVLITDATLIHLALGCPRLEKL 162
           +L       LITD +L  L   C  L+ +
Sbjct: 110 NLGRHRNGHLITDVSLSALGKNCTFLQTV 138

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 57.7 bits (140), Expect = 9e-11
 Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 21/117 (17%)

Query: 7   VLSLAENCPNLYYLCLS---GCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALA 63
           +++LA NCP L  + L        +TD SL  L + C  L T+  A C   TD G   LA
Sbjct: 96  IVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC-DVTDKGVWELA 154

Query: 64  RG---------------LLDSAVLSLAE--NCPNLYYLCLSGCSQLTDASLIVLAQR 103
            G               L D ++ ++      PNL  L   GC  +TD S I+L + 
Sbjct: 155 SGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLITDFSRIILFKL 211

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
KOG4341|consensus	483		99.79
KOG4341|consensus	483		99.66
KOG1947|consensus	482		99.63
KOG2120|consensus	419		99.55
KOG1947|consensus	482		99.42
KOG2120|consensus	419		99.41
KOG1909|consensus	382		99.39
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.36
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.33
KOG3207|consensus	505		99.28
KOG3665|consensus	699		99.15
KOG3665|consensus	699		99.1
KOG3207|consensus	505		99.01
KOG1909|consensus	382		98.98
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.88
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
KOG3864|consensus	221		98.66
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.61
KOG3864|consensus	221		98.54
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.52
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.51
KOG2982|consensus	418		98.44
KOG2982|consensus	418		98.26
KOG4194|consensus	873		98.18
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.01
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.9
KOG2123|consensus	388		97.89
KOG0618|consensus	1081		97.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.85
KOG4194|consensus	873		97.84
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.79
KOG0618|consensus	1081		97.74
KOG1259|consensus	490		97.7
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.67
KOG2739|consensus	260		97.52
KOG2739|consensus	260		97.5
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.45
KOG4237|consensus	498		97.42
KOG1859|consensus	1096		97.41
KOG1259|consensus	490		97.24
PLN03150	623	hypothetical protein; Provisional	97.22
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.08
KOG0444|consensus	1255		97.06
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.83
KOG1644|consensus	233		96.83
PLN03150	623	hypothetical protein; Provisional	96.8
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.77
KOG2123|consensus	388		96.53
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.5
KOG1859|consensus	1096		96.36
KOG4308|consensus	478		96.35
KOG3763|consensus	585		96.32
KOG0444|consensus	1255		96.18
KOG3763|consensus	585		95.99
KOG1644|consensus	233		95.86
KOG4308|consensus	478		95.73
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.43
KOG4579|consensus	177		95.42
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.4
KOG0472|consensus	565		95.39
KOG4658|consensus	889		95.35
KOG4658|consensus	889		95.15
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	95.15
KOG0617|consensus	264		94.98
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	94.91
PRK15386	426	type III secretion protein GogB; Provisional	94.54
KOG0531|consensus	414		94.52
KOG4237|consensus	498		93.99
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	93.81
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	93.56
KOG0617|consensus	264		93.52
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.45
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	91.82
KOG3735|consensus	353		91.07
KOG4579|consensus	177		90.9
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	90.33
KOG0531|consensus	414		88.56
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	86.23
KOG3735|consensus	353		84.54
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	84.49
PF03382	120	DUF285: Mycoplasma protein of unknown function, DU	83.34
KOG0472|consensus	565		83.15
PF03382	120	DUF285: Mycoplasma protein of unknown function, DU	82.92
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	82.4

>KOG4341|consensus

Probab=99.79  E-value=1.1e-19  Score=133.83  Aligned_cols=157  Identities=46%  Similarity=0.813  Sum_probs=115.9

Q ss_pred             hHHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC-------------------
Q psy9589           6 TVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL-------------------   66 (163)
Q Consensus         6 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-------------------   66 (163)
                      ++.++.++|++|++|++..|..+++..++.+++.||+|++|+++.|+.++..|++.+..++                   
T Consensus       181 s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l  260 (483)
T KOG4341|consen  181 SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEAL  260 (483)
T ss_pred             HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHH
Confidence            4567888899999999988888999999999999999999999999888887777776665                   


Q ss_pred             ---------------------CHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHH
Q psy9589          67 ---------------------LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQA  125 (163)
Q Consensus        67 ---------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~  125 (163)
                                           +++++..++..+..|+.|+.++|..+++..+.++.+++++|+.+-+.+|..+++.++..
T Consensus       261 ~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~  340 (483)
T KOG4341|consen  261 LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM  340 (483)
T ss_pred             HHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh
Confidence                                 44445555555666666666666666666666666667777777777776677666666


Q ss_pred             HHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589         126 LARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus       126 l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      +.++++.|+.+++..|..+++..+..+..+||.|+.+
T Consensus       341 l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  341 LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            6666777777777776666666666666677766654

>KOG4341|consensus

Probab=99.66  E-value=7.2e-17  Score=119.19  Aligned_cols=156  Identities=38%  Similarity=0.703  Sum_probs=82.5

Q ss_pred             HHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC--------------CHHHHH
Q psy9589           7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL--------------LDSAVL   72 (163)
Q Consensus         7 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--------------~~~~~~   72 (163)
                      +..+...|||+++|.+.+|..++|..+..+.+.|++|++|++..|..+|+..++.++..|              ..++++
T Consensus       156 lrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~  235 (483)
T KOG4341|consen  156 LRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQ  235 (483)
T ss_pred             hhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcch
Confidence            445556677777777777766777777777777777777777776666666666666655              233444


Q ss_pred             HHHhcCCCCceEecCCCCC--------------------------CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHH
Q psy9589          73 SLAENCPNLYYLCLSGCSQ--------------------------LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL  126 (163)
Q Consensus        73 ~~~~~~~~L~~L~l~~~~~--------------------------~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l  126 (163)
                      .+.+.+..++.+.+.+|..                          ++|.++-.+..+|..|+.|+.++|..+++..+.++
T Consensus       236 ~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL  315 (483)
T KOG4341|consen  236 ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL  315 (483)
T ss_pred             HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH
Confidence            4444443333333333322                          23333333333344444444444444444444444


Q ss_pred             HHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589         127 ARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus       127 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      .+++++|+.|-++.|+..++..+..+.++|+.|+.+
T Consensus       316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l  351 (483)
T KOG4341|consen  316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERL  351 (483)
T ss_pred             hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhh
Confidence            445555555555555555555555555555555443

>KOG1947|consensus

Probab=99.63  E-value=2.7e-15  Score=116.09  Aligned_cols=145  Identities=41%  Similarity=0.698  Sum_probs=123.1

Q ss_pred             HHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecC-CCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEec
Q psy9589           8 LSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVAS-CSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCL   86 (163)
Q Consensus         8 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l   86 (163)
                      ..+...+++|+.|.+..+..+++..+..+...+++|+.|.+++ +..++..+..          ...+...+++|++|++
T Consensus       181 ~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------~~~~~~~~~~L~~l~l  250 (482)
T KOG1947|consen  181 LRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL----------LLLLLSICRKLKSLDL  250 (482)
T ss_pred             HHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH----------hhhhhhhcCCcCccch
Confidence            3455568999999999999999988889999999999999998 3344433311          1224457899999999


Q ss_pred             CCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          87 SGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        87 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      +++..++|.++..++..||+|+.|.+.+|..++++++..+++.|+.|+.|++++|..+++.++..+...||+++.|
T Consensus       251 ~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l  326 (482)
T KOG1947|consen  251 SGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLREL  326 (482)
T ss_pred             hhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhh
Confidence            9988899999999998899999999999988999999999999999999999999999898888888889988764

>KOG2120|consensus

Probab=99.55  E-value=3.3e-14  Score=101.65  Aligned_cols=142  Identities=26%  Similarity=0.419  Sum_probs=81.5

Q ss_pred             HHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC-------------CHHHHHH
Q psy9589           7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL-------------LDSAVLS   73 (163)
Q Consensus         7 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-------------~~~~~~~   73 (163)
                      +..+.++|.+|+.|++.+ ..++|.....|++ -.+|+.|++++|..++.-+++.+..+|             ..+.+..
T Consensus       202 l~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv  279 (419)
T KOG2120|consen  202 LHGILSQCSKLKNLSLEG-LRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV  279 (419)
T ss_pred             HHHHHHHHHhhhhccccc-cccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH
Confidence            345667778888888877 4467766666665 567777777777777777777776666             1111222


Q ss_pred             HH-hcCCCCceEecCCCC-CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHH
Q psy9589          74 LA-ENCPNLYYLCLSGCS-QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIH  151 (163)
Q Consensus        74 ~~-~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~  151 (163)
                      +. .--++|+.|+++++. .+.+..+..+.++||+|..|++++|..+++..+..+. .++.|++|.++.|..|.++.+.+
T Consensus       280 ~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~~~  358 (419)
T KOG2120|consen  280 AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETLLE  358 (419)
T ss_pred             HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhhcCCChHHeee
Confidence            11 122455555555542 2333455555556666666666666666654444332 25566666666655555444333

>KOG1947|consensus

Probab=99.42  E-value=2e-12  Score=100.13  Aligned_cols=123  Identities=42%  Similarity=0.753  Sum_probs=100.4

Q ss_pred             HHHHHhcCCCCcEEeecC-CCCCCh--HHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCce
Q psy9589           7 VLSLAENCPNLYYLCLSG-CSQLTD--ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYY   83 (163)
Q Consensus         7 ~~~~~~~~~~L~~L~l~~-~~~~~~--~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~   83 (163)
                      +..+...+++|++|+++. +....+  .....+...|++|++|++++|..+++.++..++.            .||+|+.
T Consensus       206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~------------~c~~L~~  273 (482)
T KOG1947|consen  206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS------------RCPNLET  273 (482)
T ss_pred             HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh------------hCCCcce
Confidence            456778899999999987 333333  3345577889999999999997788888777766            6899999


Q ss_pred             EecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          84 LCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        84 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      |.+.+|..+++.++..++++||+|++|++.+|..+++.++..+..+|++|+.|.+..+
T Consensus       274 L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  274 LSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             EccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            9999988899999999999999999999999999999888888777888777655443

>KOG2120|consensus

Probab=99.41  E-value=1.8e-13  Score=97.94  Aligned_cols=145  Identities=23%  Similarity=0.368  Sum_probs=98.4

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC-------------CHHHHHHHHhcCCCC
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL-------------LDSAVLSLAENCPNL   81 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-------------~~~~~~~~~~~~~~L   81 (163)
                      +.|++|||++ ..++...+..+.+.|.+|+.|.+.|. ...+.....+|++.             +.+++.-+.+.|..|
T Consensus       185 sRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  185 SRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhhHHhhcch-hheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            5699999988 66899999999999999999999996 67777666666543             344444444555555


Q ss_pred             ceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCC-CCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCc
Q psy9589          82 YYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS-QFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLE  160 (163)
Q Consensus        82 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~  160 (163)
                      ..|+++.|....+..-..++.--+.|+.|++++|. ++....+..+++.||+|..||+++|-.++++-+.+++ .++.|+
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~  341 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQ  341 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchhe
Confidence            55555555444443222333233455555555442 2333345567778999999999999899997777776 777777


Q ss_pred             cC
Q psy9589         161 KL  162 (163)
Q Consensus       161 ~L  162 (163)
                      +|
T Consensus       342 ~l  343 (419)
T KOG2120|consen  342 HL  343 (419)
T ss_pred             ee
Confidence            64

>KOG1909|consensus

Probab=99.39  E-value=5.9e-12  Score=91.59  Aligned_cols=152  Identities=27%  Similarity=0.371  Sum_probs=92.4

Q ss_pred             HHHHHhcCCCCcEEeecCCCCC--ChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC------------------
Q psy9589           7 VLSLAENCPNLYYLCLSGCSQL--TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL------------------   66 (163)
Q Consensus         7 ~~~~~~~~~~L~~L~l~~~~~~--~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~------------------   66 (163)
                      +......+|.|++|+||+|.+=  ....+..+.++|..|++|.+.+| .+...+...++...                  
T Consensus        84 l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~  162 (382)
T KOG1909|consen   84 LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVF  162 (382)
T ss_pred             HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence            3444556889999999998642  22555667788999999999988 77766666654422                  


Q ss_pred             ----------CHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHH---HhCCCCCEEEecCCCCCCHHHHHHHHH---cC
Q psy9589          67 ----------LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTDTGFQALAR---NC  130 (163)
Q Consensus        67 ----------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~  130 (163)
                                ....+...++..|.|+.+.+.. +++...++..++   ++||+|+.|+|.+ +.++..+-..+++   .+
T Consensus       163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~  240 (382)
T KOG1909|consen  163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSW  240 (382)
T ss_pred             EeeccccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhccc
Confidence                      2333344445566777777766 345444443222   3567777777766 3455544444433   35


Q ss_pred             CCCCEEeccCCCCCChHHHH----HHHhCCCCCccC
Q psy9589         131 RLLAKMDLEECVLITDATLI----HLALGCPRLEKL  162 (163)
Q Consensus       131 ~~L~~L~l~~~~~l~~~~~~----~l~~~~~~L~~L  162 (163)
                      |+|+.|++++| .+..++..    .+.+..|.|+.|
T Consensus       241 ~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl  275 (382)
T KOG1909|consen  241 PHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVL  275 (382)
T ss_pred             chheeeccccc-ccccccHHHHHHHHhccCCCCcee
Confidence            66777777777 66654333    333445555543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.36  E-value=5.3e-11  Score=87.76  Aligned_cols=69  Identities=32%  Similarity=0.260  Sum_probs=36.2

Q ss_pred             CCCceEecCCCCCCCHHHHHHHH---HhCCCCCEEEecCCCCCCHHHHHHHHHcC----CCCCEEeccCCCCCChHHHH
Q psy9589          79 PNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTDTGFQALARNC----RLLAKMDLEECVLITDATLI  150 (163)
Q Consensus        79 ~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~i~~~~~~~l~~~~----~~L~~L~l~~~~~l~~~~~~  150 (163)
                      ++|++|+++++ .+++.+...+.   ..+++|+.|++++| .+++.++..+++.+    +.|++|++++| .+++.+..
T Consensus       193 ~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~  268 (319)
T cd00116         193 CNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAK  268 (319)
T ss_pred             CCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHH
Confidence            46666666664 34444433332   24556666666664 35555544444432    56666666666 55544433

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.33  E-value=1.7e-10  Score=85.04  Aligned_cols=72  Identities=28%  Similarity=0.271  Sum_probs=43.7

Q ss_pred             HhcCCCCceEecCCCCCCCHHHHHHHHHhC----CCCCEEEecCCCCCCHHHHHHHHH---cCCCCCEEeccCCCCCChH
Q psy9589          75 AENCPNLYYLCLSGCSQLTDASLIVLAQRC----HQLHTLEVASCSQFTDTGFQALAR---NCRLLAKMDLEECVLITDA  147 (163)
Q Consensus        75 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~----~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~  147 (163)
                      ...+++|++|+++++ .+++.++..++..+    +.|++|++++| .+++.+...+.+   .+++|+++++++| .++++
T Consensus       217 ~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~  293 (319)
T cd00116         217 LASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KFGEE  293 (319)
T ss_pred             hcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHH
Confidence            345667777777774 46666666655443    57777777764 465444433332   3456777777776 66665


Q ss_pred             HH
Q psy9589         148 TL  149 (163)
Q Consensus       148 ~~  149 (163)
                      +.
T Consensus       294 ~~  295 (319)
T cd00116         294 GA  295 (319)
T ss_pred             HH
Confidence            43

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207|consensus

Probab=99.28  E-value=1.5e-12  Score=97.20  Aligned_cols=123  Identities=17%  Similarity=0.094  Sum_probs=89.2

Q ss_pred             HHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCC
Q psy9589           9 SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSG   88 (163)
Q Consensus         9 ~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~   88 (163)
                      ...+.||+++.|+|+.+.+.....+..+++.+|+|+.|+++.|......+-.             .-..+++|+.|.+++
T Consensus       140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-------------~~~~l~~lK~L~l~~  206 (505)
T KOG3207|consen  140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-------------TTLLLSHLKQLVLNS  206 (505)
T ss_pred             hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-------------chhhhhhhheEEecc
Confidence            3567899999999999988888999999999999999999998533221100             001457899999999


Q ss_pred             CCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChH
Q psy9589          89 CSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDA  147 (163)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~  147 (163)
                      | +++++.+..+...||+|+.|++..+..+.-..-.  .+.++.|+.||+++|..++..
T Consensus       207 C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~  262 (505)
T KOG3207|consen  207 C-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFD  262 (505)
T ss_pred             C-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCcccccc
Confidence            8 6889999999989999999999886433221110  122456777777776544443

>KOG3665|consensus

Probab=99.15  E-value=4.2e-10  Score=90.65  Aligned_cols=133  Identities=20%  Similarity=0.247  Sum_probs=82.1

Q ss_pred             HHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChH-HHHHHHhcCCHHHHHHHHhcCCCCceEecCC
Q psy9589          10 LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDT-GFQALARGLLDSAVLSLAENCPNLYYLCLSG   88 (163)
Q Consensus        10 ~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~   88 (163)
                      +...+|+|++|.+.+.. +..+.+..+...+|||.+|++|++ .+++- |+.                ++++|+.|.+.+
T Consensus       143 ig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS----------------~LknLq~L~mrn  204 (699)
T KOG3665|consen  143 IGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGT-NISNLSGIS----------------RLKNLQVLSMRN  204 (699)
T ss_pred             HhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCC-CccCcHHHh----------------ccccHHHHhccC
Confidence            44456666666665533 233335555556666666666664 33322 111                345566665555


Q ss_pred             CCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHH-HHHHHH---HcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          89 CSQLTDASLIVLAQRCHQLHTLEVASCSQFTDT-GFQALA---RNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~-~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      .+.-+...+..++ .+.+|+.||++........ -+....   ..+|.|+.||.|+. .++.+.++.+....|+|+.+
T Consensus       205 Le~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  205 LEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             CCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCccHhhh
Confidence            4444445666777 7899999999875444433 222222   23799999999994 99999999998888888754

>KOG3665|consensus

Probab=99.10  E-value=3.1e-10  Score=91.38  Aligned_cols=132  Identities=20%  Similarity=0.244  Sum_probs=96.5

Q ss_pred             CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589          14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT   93 (163)
Q Consensus        14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   93 (163)
                      -.+|++|++++...+.......+...+|.|++|.+++- .+..+.+            ..+++.+|+|.+||++++ +++
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF------------~~lc~sFpNL~sLDIS~T-nI~  186 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDF------------SQLCASFPNLRSLDISGT-NIS  186 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhH------------HHHhhccCccceeecCCC-Ccc
Confidence            36999999999777777788889999999999999984 4444333            344568999999999995 455


Q ss_pred             HHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChH-HH---HHHHhCCCCCccCC
Q psy9589          94 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDA-TL---IHLALGCPRLEKLI  163 (163)
Q Consensus        94 ~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~---~~l~~~~~~L~~L~  163 (163)
                      +-  ..+. ++++|+.|.+.+-+.-+...+..++. +++|+.||+|...+.+.. .+   .+-...+|+|+.||
T Consensus       187 nl--~GIS-~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLD  256 (699)
T KOG3665|consen  187 NL--SGIS-RLKNLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLD  256 (699)
T ss_pred             Cc--HHHh-ccccHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEe
Confidence            43  3444 78899999998755444456777765 899999999987554443 22   23344688888775

>KOG3207|consensus

Probab=99.01  E-value=1.9e-10  Score=86.10  Aligned_cols=122  Identities=20%  Similarity=0.145  Sum_probs=92.0

Q ss_pred             hHHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEe
Q psy9589           6 TVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLC   85 (163)
Q Consensus         6 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~   85 (163)
                      .+..-.+.+.+|+++.|.+++ +.+...+..++.||+++.|+++++ -+.           .+..+.+|++.+|+|+.|+
T Consensus       112 ki~akQsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N-L~~-----------nw~~v~~i~eqLp~Le~LN  178 (505)
T KOG3207|consen  112 KIAAKQSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN-LFH-----------NWFPVLKIAEQLPSLENLN  178 (505)
T ss_pred             HHHHHhhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh-hHH-----------hHHHHHHHHHhcccchhcc
Confidence            344445678899999998854 677666677888999999999986 332           2467778888999999999


Q ss_pred             cCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589          86 LSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV  142 (163)
Q Consensus        86 l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  142 (163)
                      ++...-.... -...-..+++|+.|.++.| .++.+.+..++..||+|+.|++.+|.
T Consensus       179 ls~Nrl~~~~-~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  179 LSSNRLSNFI-SSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             cccccccCCc-cccchhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhccc
Confidence            9985322111 1111125789999999998 58888888888999999999999983

>KOG1909|consensus

Probab=98.98  E-value=6.5e-09  Score=76.03  Aligned_cols=135  Identities=25%  Similarity=0.323  Sum_probs=82.8

Q ss_pred             CCCcEEeecCCCCCCh--HHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589          15 PNLYYLCLSGCSQLTD--ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL   92 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~--~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   92 (163)
                      |+|+++....|..-+.  ..+..+.+.+|.|+.+.++.+ .|...|+..++.         -+.+||+|+.|+|.. +.+
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~e---------al~~~~~LevLdl~D-Ntf  225 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAE---------ALEHCPHLEVLDLRD-NTF  225 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHH---------HHHhCCcceeeeccc-chh
Confidence            4555555555443221  222234445566666666554 444444433322         235889999999988 578


Q ss_pred             CHHHHHHHHHh---CCCCCEEEecCCCCCCHHHHHHHH----HcCCCCCEEeccCCCCCChHHHHHHHh---CCCCCccC
Q psy9589          93 TDASLIVLAQR---CHQLHTLEVASCSQFTDTGFQALA----RNCRLLAKMDLEECVLITDATLIHLAL---GCPRLEKL  162 (163)
Q Consensus        93 ~~~~~~~l~~~---~~~L~~L~l~~~~~i~~~~~~~l~----~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L  162 (163)
                      +..+-..+++.   +|+|+.|++++|. ++.++..++.    +..|.|+.|.+.+| .|+.++...++.   ..|.|..|
T Consensus       226 t~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kL  303 (382)
T KOG1909|consen  226 TLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKL  303 (382)
T ss_pred             hhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHh
Confidence            87777777643   5788899999984 6655554443    44789999999998 888776554432   34555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.88  E-value=4.4e-08  Score=69.95  Aligned_cols=146  Identities=21%  Similarity=0.231  Sum_probs=98.7

Q ss_pred             HHHHHhcCCCCcEEeecCCCC--CChHHHHHHHHhCCcCCEEEecCCCCCChHHH-------HHHHhcC-----------
Q psy9589           7 VLSLAENCPNLYYLCLSGCSQ--LTDASLIVLAQRCHQLHTLEVASCSQFTDTGF-------QALARGL-----------   66 (163)
Q Consensus         7 ~~~~~~~~~~L~~L~l~~~~~--~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~-------~~l~~~~-----------   66 (163)
                      +......||.|+.++|++|.+  -....+..+.++..+|+||.+++| .....+-       ..++..-           
T Consensus        84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~v  162 (388)
T COG5238          84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVV  162 (388)
T ss_pred             HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence            344556799999999999876  334666677778899999999988 4433222       2222221           


Q ss_pred             ----------CHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHH----HhCCCCCEEEecCCCCCCHHHHHHHH---Hc
Q psy9589          67 ----------LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLA----QRCHQLHTLEVASCSQFTDTGFQALA---RN  129 (163)
Q Consensus        67 ----------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~~i~~~~~~~l~---~~  129 (163)
                                +........+.-.+|+.+.+.+ +++...++..++    .+|.+|+.|++.+ +.+|-.+-..++   ..
T Consensus       163 icgrNRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~  240 (388)
T COG5238         163 ICGRNRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCE  240 (388)
T ss_pred             EeccchhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcc
Confidence                      2333333333335888888887 578777766553    4789999999988 456655544443   34


Q ss_pred             CCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589         130 CRLLAKMDLEECVLITDATLIHLALGC  156 (163)
Q Consensus       130 ~~~L~~L~l~~~~~l~~~~~~~l~~~~  156 (163)
                      ++.|+.|.+..| .++.++..++++.+
T Consensus       241 W~~lrEL~lnDC-lls~~G~~~v~~~f  266 (388)
T COG5238         241 WNLLRELRLNDC-LLSNEGVKSVLRRF  266 (388)
T ss_pred             cchhhhccccch-hhccccHHHHHHHh
Confidence            788999999999 88877777666543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=6.1e-10  Score=75.34  Aligned_cols=124  Identities=22%  Similarity=0.295  Sum_probs=41.9

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCCh-HHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD-TGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT   93 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   93 (163)
                      -++++|+|+++. ++.  ++.+...+.+|+.|++++| .++. .++.                .+++|+.|++++. .++
T Consensus        19 ~~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~l~~l~----------------~L~~L~~L~L~~N-~I~   77 (175)
T PF14580_consen   19 VKLRELNLRGNQ-IST--IENLGATLDKLEVLDLSNN-QITKLEGLP----------------GLPRLKTLDLSNN-RIS   77 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS---S--TT--------------------TT--EEE--SS----
T ss_pred             cccccccccccc-ccc--ccchhhhhcCCCEEECCCC-CCccccCcc----------------ChhhhhhcccCCC-CCC
Confidence            367888888754 222  2334445778888888887 3332 1211                4678888888873 454


Q ss_pred             HHHHHHHHHhCCCCCEEEecCCCCCCHH-HHHHHHHcCCCCCEEeccCCCCCCh-HHH-HHHHhCCCCCccCC
Q psy9589          94 DASLIVLAQRCHQLHTLEVASCSQFTDT-GFQALARNCRLLAKMDLEECVLITD-ATL-IHLALGCPRLEKLI  163 (163)
Q Consensus        94 ~~~~~~l~~~~~~L~~L~l~~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~~l~~-~~~-~~l~~~~~~L~~L~  163 (163)
                      ..+ ..+...+|+|++|++++ +.|.+- .+..+ ..+|+|+.|++.+| .+++ ... ..+...+|+|+.||
T Consensus        78 ~i~-~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L-~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   78 SIS-EGLDKNLPNLQELYLSN-NKISDLNELEPL-SSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             S-C-HHHHHH-TT--EEE-TT-S---SCCCCGGG-GG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             ccc-cchHHhCCcCCEEECcC-CcCCChHHhHHH-HcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeC
Confidence            431 12333678888888877 455542 23333 45788888888887 4443 222 23445788888775

>KOG3864|consensus

Probab=98.66  E-value=3.3e-08  Score=67.41  Aligned_cols=83  Identities=20%  Similarity=0.379  Sum_probs=66.7

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHH--HHHHHh
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDAT--LIHLAL  154 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~--~~~l~~  154 (163)
                      .++.++.|.+.+|..+.|..+..+..-.|+|+.|+|++|+.||+.++..+.+ +++|+.|.+.+-+.+..-+  ...+-.
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~l~~v~~~e~~~~~Le~  201 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYDLPYVANLELVQRQLEE  201 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHhcCchhhhchHHHHHHHHH
Confidence            6789999999999999999999999778999999999999999999887754 8999999998876665522  223334


Q ss_pred             CCCCCc
Q psy9589         155 GCPRLE  160 (163)
Q Consensus       155 ~~~~L~  160 (163)
                      .+|+.+
T Consensus       202 aLP~c~  207 (221)
T KOG3864|consen  202 ALPKCD  207 (221)
T ss_pred             hCcccc
Confidence            566654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.61  E-value=1.6e-08  Score=68.45  Aligned_cols=114  Identities=20%  Similarity=0.227  Sum_probs=50.4

Q ss_pred             HHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEec
Q psy9589           7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCL   86 (163)
Q Consensus         7 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l   86 (163)
                      +..+...+.+|+.|++++|...+=..    ...+++|+.|++++| .++..+             +.+.+.+|+|++|.+
T Consensus        34 Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N-~I~~i~-------------~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   34 IENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNN-RISSIS-------------EGLDKNLPNLQELYL   95 (175)
T ss_dssp             --S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS----S-C-------------HHHHHH-TT--EEE-
T ss_pred             ccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCC-CCCccc-------------cchHHhCCcCCEEEC
Confidence            33444567899999999976432222    245899999999997 555432             112236899999999


Q ss_pred             CCCCCCCH-HHHHHHHHhCCCCCEEEecCCCCCCHH-HH-HHHHHcCCCCCEEeccCC
Q psy9589          87 SGCSQLTD-ASLIVLAQRCHQLHTLEVASCSQFTDT-GF-QALARNCRLLAKMDLEEC  141 (163)
Q Consensus        87 ~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~i~~~-~~-~~l~~~~~~L~~L~l~~~  141 (163)
                      ++. .+.+ ..+..+. .+|+|+.|++.+++ +++. .. ..+...+|+|+.||-..-
T Consensus        96 ~~N-~I~~l~~l~~L~-~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   96 SNN-KISDLNELEPLS-SLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             TTS----SCCCCGGGG-G-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             cCC-cCCChHHhHHHH-cCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence            985 4543 3345555 79999999999965 4432 22 233456899999987653

>KOG3864|consensus

Probab=98.54  E-value=7.1e-08  Score=65.83  Aligned_cols=80  Identities=25%  Similarity=0.326  Sum_probs=69.2

Q ss_pred             CCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCC
Q psy9589          80 NLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRL  159 (163)
Q Consensus        80 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L  159 (163)
                      .++.++.+++ .+...++..+. +++.|+.|.+.+|..+.+.+++.+..-.++|+.|+++.|+.||+.++..+. .+++|
T Consensus       102 ~IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknL  178 (221)
T KOG3864|consen  102 KIEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNL  178 (221)
T ss_pred             eEEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hhhhh
Confidence            4778888884 68888888888 899999999999999999999999887899999999999999999887775 66666


Q ss_pred             ccC
Q psy9589         160 EKL  162 (163)
Q Consensus       160 ~~L  162 (163)
                      +.|
T Consensus       179 r~L  181 (221)
T KOG3864|consen  179 RRL  181 (221)
T ss_pred             HHH
Confidence            654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.52  E-value=1.4e-07  Score=79.40  Aligned_cols=143  Identities=15%  Similarity=0.064  Sum_probs=63.8

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChH-HHHHHHhcC----CH----HHHHHHHhcCCCCc
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDT-GFQALARGL----LD----SAVLSLAENCPNLY   82 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~----~~----~~~~~~~~~~~~L~   82 (163)
                      ..+++|+.|++++|.. +...-..+...+++|++|++++|. ++.. ....+....    ..    ..+......+++|+
T Consensus        90 ~~l~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  167 (968)
T PLN00113         90 FRLPYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNN-FTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK  167 (968)
T ss_pred             hCCCCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCc-cccccCccccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence            3577888888877653 221112234456777777777763 2210 000000000    00    00111123455666


Q ss_pred             eEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          83 YLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        83 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      +|+++++. +.......+. .+++|++|++++|. ++...... ...+++|+.|++++| .++...... +..+++|++|
T Consensus       168 ~L~L~~n~-l~~~~p~~~~-~l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L  241 (968)
T PLN00113        168 VLDLGGNV-LVGKIPNSLT-NLTSLEFLTLASNQ-LVGQIPRE-LGQMKSLKWIYLGYN-NLSGEIPYE-IGGLTSLNHL  241 (968)
T ss_pred             EEECccCc-ccccCChhhh-hCcCCCeeeccCCC-CcCcCChH-HcCcCCccEEECcCC-ccCCcCChh-HhcCCCCCEE
Confidence            66665532 2222222232 55666666666542 33211112 234566777777766 444321122 2355666654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.51  E-value=1.4e-07  Score=79.35  Aligned_cols=81  Identities=16%  Similarity=0.076  Sum_probs=54.9

Q ss_pred             hcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhC
Q psy9589          76 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALG  155 (163)
Q Consensus        76 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~  155 (163)
                      ..+++|++|+++++. +.......+. .+++|+.|+++++ .++......+ ..+++|++|++++| .++... ...+..
T Consensus       185 ~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~L~~L~L~~n-~l~~~~-p~~l~~  258 (968)
T PLN00113        185 TNLTSLEFLTLASNQ-LVGQIPRELG-QMKSLKWIYLGYN-NLSGEIPYEI-GGLTSLNHLDLVYN-NLTGPI-PSSLGN  258 (968)
T ss_pred             hhCcCCCeeeccCCC-CcCcCChHHc-CcCCccEEECcCC-ccCCcCChhH-hcCCCCCEEECcCc-eecccc-ChhHhC
Confidence            367899999999864 4433334444 7899999999985 4554322233 45899999999998 555432 223457


Q ss_pred             CCCCccC
Q psy9589         156 CPRLEKL  162 (163)
Q Consensus       156 ~~~L~~L  162 (163)
                      +++|+.|
T Consensus       259 l~~L~~L  265 (968)
T PLN00113        259 LKNLQYL  265 (968)
T ss_pred             CCCCCEE
Confidence            7778765

>KOG2982|consensus

Probab=98.44  E-value=8.3e-08  Score=69.38  Aligned_cols=98  Identities=16%  Similarity=0.083  Sum_probs=71.2

Q ss_pred             hHHhHHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCc
Q psy9589           3 IFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLY   82 (163)
Q Consensus         3 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~   82 (163)
                      .-..+..+.+.++.+++++|.+|...++..+-.|.+++|.|+.|+++.|.--++.+-..              -...+|+
T Consensus        59 ~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--------------~p~~nl~  124 (418)
T KOG2982|consen   59 NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--------------LPLKNLR  124 (418)
T ss_pred             cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--------------ccccceE
Confidence            33445667778889999999887766667777888999999999998774333322110              1345888


Q ss_pred             eEecCCCCCCCHHHHHHHHHhCCCCCEEEecCC
Q psy9589          83 YLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC  115 (163)
Q Consensus        83 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  115 (163)
                      .|-+.+ .++++.........+|.++.|+++.+
T Consensus       125 ~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  125 VLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             EEEEcC-CCCChhhhhhhhhcchhhhhhhhccc
Confidence            888888 57888888777777888888877764

>KOG2982|consensus

Probab=98.26  E-value=1e-06  Score=63.89  Aligned_cols=152  Identities=16%  Similarity=0.113  Sum_probs=88.4

Q ss_pred             HHhHHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC--------CHHHHHHHH
Q psy9589           4 FITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL--------LDSAVLSLA   75 (163)
Q Consensus         4 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--------~~~~~~~~~   75 (163)
                      |..++.+.+++|.|+.|++++|.-.++..-  +--...+|+.|.+.|. ..+......+....        +++++..+.
T Consensus        86 WseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n  162 (418)
T KOG2982|consen   86 WSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNSLRQLN  162 (418)
T ss_pred             HHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccchhhhhc
Confidence            567788999999999999999764444222  2122568899999884 55554444443322        111111110


Q ss_pred             -------hcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHH
Q psy9589          76 -------ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDAT  148 (163)
Q Consensus        76 -------~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~  148 (163)
                             +--|.++.|....|....+.....+.+.+|++.++.+..|+ ++......-.+.+|.+.-|.++.+ +|.+++
T Consensus       163 ~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~idswa  240 (418)
T KOG2982|consen  163 LDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDSWA  240 (418)
T ss_pred             cccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhccc-ccccHH
Confidence                   01134556666666555556666777778888888888765 443333333345666777777775 666544


Q ss_pred             HHHHHhCCCCCc
Q psy9589         149 LIHLALGCPRLE  160 (163)
Q Consensus       149 ~~~l~~~~~~L~  160 (163)
                      ...-...+|+|.
T Consensus       241 svD~Ln~f~~l~  252 (418)
T KOG2982|consen  241 SVDALNGFPQLV  252 (418)
T ss_pred             HHHHHcCCchhh
Confidence            322223555543

>KOG4194|consensus

Probab=98.18  E-value=2.1e-07  Score=72.75  Aligned_cols=124  Identities=18%  Similarity=0.134  Sum_probs=75.5

Q ss_pred             HhcCCCCcEEeecCCCC--CChHHHHHHHHhCCcCCEEEecCCC--CCChHHHHHHHhcC----CHHHHHH----HHhcC
Q psy9589          11 AENCPNLYYLCLSGCSQ--LTDASLIVLAQRCHQLHTLEVASCS--QFTDTGFQALARGL----LDSAVLS----LAENC   78 (163)
Q Consensus        11 ~~~~~~L~~L~l~~~~~--~~~~~l~~i~~~~~~L~~L~l~~~~--~~~~~~~~~l~~~~----~~~~~~~----~~~~~   78 (163)
                      ...+..|+.|+++.|..  +.-+.+    +.|+.|+.|+++.|.  .+....+..+....    ..+.+.+    .+..+
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d~W----sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l  364 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHIDSW----SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL  364 (873)
T ss_pred             ccccchhhhhccchhhhheeecchh----hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh
Confidence            34567788888877542  223333    347788888887762  22344444443322    2222222    34567


Q ss_pred             CCCceEecCCCCCCCH--HHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          79 PNLYYLCLSGCSQLTD--ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        79 ~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .+|+.|+|... .+++  ++....+.++|.|+.|.+.+ +.++.-.-.++ .+++.|+.||+.+|
T Consensus       365 ssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAf-sgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  365 SSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAF-SGLEALEHLDLGDN  426 (873)
T ss_pred             hhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecC-ceeeecchhhh-ccCcccceecCCCC
Confidence            88999999884 4443  12333444799999999988 45665443333 56899999999997

>PLN03210 Resistant to P

Probab=98.01  E-value=7e-06  Score=70.52  Aligned_cols=39  Identities=31%  Similarity=0.488  Sum_probs=23.1

Q ss_pred             CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCC
Q psy9589          14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQF   54 (163)
Q Consensus        14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~   54 (163)
                      +++|++|++++|..+....  .-...+++|+.|++++|..+
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP--~si~~L~~L~~L~Ls~C~~L  815 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELP--SSIQNLHKLEHLEIENCINL  815 (1153)
T ss_pred             cccchheeCCCCCCccccC--hhhhCCCCCCEEECCCCCCc
Confidence            4567777777765433321  12345777788888777543

syringae 6; Provisional

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.90  E-value=1.7e-05  Score=36.36  Aligned_cols=24  Identities=46%  Similarity=0.937  Sum_probs=13.2

Q ss_pred             CCcCCEEEecCCCCCChHHHHHHH
Q psy9589          40 CHQLHTLEVASCSQFTDTGFQALA   63 (163)
Q Consensus        40 ~~~L~~L~l~~~~~~~~~~~~~l~   63 (163)
                      ||+|++|++++|..+++.|+..++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            455555555555555555555544

>KOG2123|consensus

Probab=97.89  E-value=5.2e-06  Score=59.78  Aligned_cols=61  Identities=28%  Similarity=0.301  Sum_probs=26.2

Q ss_pred             hcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          76 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        76 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      ..+|.|+.|.|+-. .++  .+..+. +|+.|++|+|.. +.|.+-......+++|+|+.|.+..|
T Consensus        38 ~kMp~lEVLsLSvN-kIs--sL~pl~-rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVN-KIS--SLAPLQ-RCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             HhcccceeEEeecc-ccc--cchhHH-HHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccC
Confidence            34555555555442 222  122222 455555555554 23443322233344555555555443

>KOG0618|consensus

Probab=97.88  E-value=1.9e-06  Score=70.45  Aligned_cols=39  Identities=15%  Similarity=0.221  Sum_probs=29.5

Q ss_pred             hCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCC
Q psy9589         103 RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVL  143 (163)
Q Consensus       103 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~  143 (163)
                      .+++|+.+|++. ++++...+..... .|+|++||+++|+.
T Consensus       450 ~l~qL~~lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  450 QLPQLKVLDLSC-NNLSEVTLPEALP-SPNLKYLDLSGNTR  488 (1081)
T ss_pred             hcCcceEEeccc-chhhhhhhhhhCC-CcccceeeccCCcc
Confidence            678999999976 6787755544332 48999999999863

>PLN03210 Resistant to P

Probab=97.85  E-value=2.4e-05  Score=67.31  Aligned_cols=110  Identities=18%  Similarity=0.340  Sum_probs=69.9

Q ss_pred             HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589          11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS   90 (163)
Q Consensus        11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   90 (163)
                      ...+++|+.|++++|..+..-.-. +  .+++|+.|++++|..+..-                 ....++|+.|+++++ 
T Consensus       798 i~~L~~L~~L~Ls~C~~L~~LP~~-~--~L~sL~~L~Ls~c~~L~~~-----------------p~~~~nL~~L~Ls~n-  856 (1153)
T PLN03210        798 IQNLHKLEHLEIENCINLETLPTG-I--NLESLESLDLSGCSRLRTF-----------------PDISTNISDLNLSRT-  856 (1153)
T ss_pred             hhCCCCCCEEECCCCCCcCeeCCC-C--CccccCEEECCCCCccccc-----------------cccccccCEeECCCC-
Confidence            346899999999998765432111 1  4789999999999654321                 012357888888774 


Q ss_pred             CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589          91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT  145 (163)
Q Consensus        91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  145 (163)
                      .+... ...+ ..+++|+.|++.+|++++.-..  ....++.|+.+++++|..++
T Consensus       857 ~i~~i-P~si-~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        857 GIEEV-PWWI-EKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             CCccC-hHHH-hcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccc
Confidence            34421 1122 3678888888888877664221  22346778888888876654

syringae 6; Provisional

>KOG4194|consensus

Probab=97.84  E-value=4.7e-06  Score=65.48  Aligned_cols=58  Identities=19%  Similarity=0.240  Sum_probs=31.2

Q ss_pred             CCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          80 NLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        80 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      ++++|+|++ +.+++.+...+. .+.+|-.|.|++ +.++.-....+ +++|+|+.|++..|
T Consensus       174 ni~~L~La~-N~It~l~~~~F~-~lnsL~tlkLsr-NrittLp~r~F-k~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  174 NIKKLNLAS-NRITTLETGHFD-SLNSLLTLKLSR-NRITTLPQRSF-KRLPKLESLDLNRN  231 (873)
T ss_pred             CceEEeecc-cccccccccccc-ccchheeeeccc-CcccccCHHHh-hhcchhhhhhcccc
Confidence            566666665 345554444444 445566666655 34554443322 44666777766665

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.79  E-value=3.9e-05  Score=35.07  Aligned_cols=24  Identities=46%  Similarity=0.686  Sum_probs=12.7

Q ss_pred             CCCCCEEeccCCCCCChHHHHHHH
Q psy9589         130 CRLLAKMDLEECVLITDATLIHLA  153 (163)
Q Consensus       130 ~~~L~~L~l~~~~~l~~~~~~~l~  153 (163)
                      ||+|++|++++|+.|++.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            345555555555555555555443

>KOG0618|consensus

Probab=97.74  E-value=1.2e-05  Score=66.06  Aligned_cols=123  Identities=20%  Similarity=0.212  Sum_probs=62.6

Q ss_pred             HHHhcCCCCcEEeecCCC--CCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC---------CHHHHHHHHhc
Q psy9589           9 SLAENCPNLYYLCLSGCS--QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL---------LDSAVLSLAEN   77 (163)
Q Consensus         9 ~~~~~~~~L~~L~l~~~~--~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~   77 (163)
                      .....+++|+.|+|++|.  .+.+..+    ..++.|++|++||| ..+.-.-......+         -...+..+ ..
T Consensus       377 p~l~~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~-~~  450 (1081)
T KOG0618|consen  377 PVLVNFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLSFPEL-AQ  450 (1081)
T ss_pred             hhhccccceeeeeecccccccCCHHHH----hchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceeechhh-hh
Confidence            344567778888887753  2333222    34677788888876 33322211111000         01111222 25


Q ss_pred             CCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          78 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        78 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .|.|+.+|++. +.++...+.+.. -.|+|++|+++++.... -..+.+ +.++.+..+++.-+
T Consensus       451 l~qL~~lDlS~-N~L~~~~l~~~~-p~p~LkyLdlSGN~~l~-~d~~~l-~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  451 LPQLKVLDLSC-NNLSEVTLPEAL-PSPNLKYLDLSGNTRLV-FDHKTL-KVLKSLSQMDITLN  510 (1081)
T ss_pred             cCcceEEeccc-chhhhhhhhhhC-CCcccceeeccCCcccc-cchhhh-HHhhhhhheecccC
Confidence            67888888877 456655554433 23788888888865311 111112 22455555555543

>KOG1259|consensus

Probab=97.70  E-value=2.8e-05  Score=56.82  Aligned_cols=103  Identities=24%  Similarity=0.274  Sum_probs=52.2

Q ss_pred             CCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHH
Q psy9589          16 NLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDA   95 (163)
Q Consensus        16 ~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~   95 (163)
                      .|++|++++|. ++.  +..-.+..|.++.|+++.| .+...+-  +             +.+++|++|++++. .++. 
T Consensus       285 ~LtelDLS~N~-I~~--iDESvKL~Pkir~L~lS~N-~i~~v~n--L-------------a~L~~L~~LDLS~N-~Ls~-  343 (490)
T KOG1259|consen  285 ELTELDLSGNL-ITQ--IDESVKLAPKLRRLILSQN-RIRTVQN--L-------------AELPQLQLLDLSGN-LLAE-  343 (490)
T ss_pred             hhhhccccccc-hhh--hhhhhhhccceeEEecccc-ceeeehh--h-------------hhcccceEeecccc-hhHh-
Confidence            45667777743 222  1122244677888888776 3332211  1             14577777777773 2322 


Q ss_pred             HHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589          96 SLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT  145 (163)
Q Consensus        96 ~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  145 (163)
                       +..+-..+.+++.|.++.+ .+.+  +..+ ..+.+|.+||+++| +|.
T Consensus       344 -~~Gwh~KLGNIKtL~La~N-~iE~--LSGL-~KLYSLvnLDl~~N-~Ie  387 (490)
T KOG1259|consen  344 -CVGWHLKLGNIKTLKLAQN-KIET--LSGL-RKLYSLVNLDLSSN-QIE  387 (490)
T ss_pred             -hhhhHhhhcCEeeeehhhh-hHhh--hhhh-Hhhhhheecccccc-chh
Confidence             1222224567777766652 2221  1111 22456666677665 443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.67  E-value=2.5e-06  Score=47.60  Aligned_cols=59  Identities=27%  Similarity=0.239  Sum_probs=33.2

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          79 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        79 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      |+|++|+++++ .++......+ .++++|++|+++++ .++.-.. ....++++|++|++++|
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f-~~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSF-SNLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTT-TTGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCHHHH-cCCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCC
Confidence            45666666664 3433222222 26777777777763 4553222 22355677777777776

...

>KOG2739|consensus

Probab=97.52  E-value=2.9e-05  Score=55.14  Aligned_cols=84  Identities=26%  Similarity=0.358  Sum_probs=42.6

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCH-HHHHHHHHcCCCCCEEeccCCCC--CChHHHHHHH
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD-TGFQALARNCRLLAKMDLEECVL--ITDATLIHLA  153 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~~--l~~~~~~~l~  153 (163)
                      .+|+|+.|.++........++..++..+|+|+++.+++ +.+++ ..+.-+ +..++|..|++..|..  +++. -..++
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl-~~l~nL~~Ldl~n~~~~~l~dy-re~vf  139 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPL-KELENLKSLDLFNCSVTNLDDY-REKVF  139 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchh-hhhcchhhhhcccCCccccccH-HHHHH
Confidence            45566677666543333344555555567777777766 34543 112222 2245666666666622  2121 23444


Q ss_pred             hCCCCCccCC
Q psy9589         154 LGCPRLEKLI  163 (163)
Q Consensus       154 ~~~~~L~~L~  163 (163)
                      .-+|+|+.||
T Consensus       140 ~ll~~L~~LD  149 (260)
T KOG2739|consen  140 LLLPSLKYLD  149 (260)
T ss_pred             HHhhhhcccc
Confidence            5556665554

>KOG2739|consensus

Probab=97.50  E-value=5.5e-05  Score=53.76  Aligned_cols=39  Identities=28%  Similarity=0.330  Sum_probs=19.7

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      .+|+|++|.++.+..-....+..++..+|+|++|++++|
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N  101 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN  101 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence            345555555555432233344444455566666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.45  E-value=7.7e-06  Score=45.62  Aligned_cols=37  Identities=30%  Similarity=0.251  Sum_probs=17.3

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC  115 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  115 (163)
                      .+++|++|+++++ .+....... +.++++|++|++++|
T Consensus        23 ~l~~L~~L~l~~N-~l~~i~~~~-f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   23 NLPNLETLDLSNN-NLTSIPPDA-FSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TGTTESEEEETSS-SESEEETTT-TTTSTTESEEEETSS
T ss_pred             CCCCCCEeEccCC-ccCccCHHH-HcCCCCCCEEeCcCC
Confidence            3455555555543 233221112 225566666666553

...

>KOG4237|consensus

Probab=97.42  E-value=7.7e-05  Score=56.19  Aligned_cols=41  Identities=20%  Similarity=0.175  Sum_probs=24.2

Q ss_pred             hcCCCCcEEeecCCCC--CChHHHHHHHHhCCcCCEEEecCCCCCCh
Q psy9589          12 ENCPNLYYLCLSGCSQ--LTDASLIVLAQRCHQLHTLEVASCSQFTD   56 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~--~~~~~l~~i~~~~~~L~~L~l~~~~~~~~   56 (163)
                      ..+++|++|+|++|..  +....+    ++++.+..|.+-++.+|++
T Consensus        88 ~~l~~LRrLdLS~N~Is~I~p~AF----~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   88 KTLHRLRRLDLSKNNISFIAPDAF----KGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             cchhhhceecccccchhhcChHhh----hhhHhhhHHHhhcCCchhh
Confidence            4578899999988642  333333    4455565666655444443

>KOG1859|consensus

Probab=97.41  E-value=3e-05  Score=62.57  Aligned_cols=35  Identities=29%  Similarity=0.282  Sum_probs=23.3

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC  115 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  115 (163)
                      -.|.|++|+|+.+ .+.+..  .+. .|++|+.|+|+.+
T Consensus       185 ll~ale~LnLshN-k~~~v~--~Lr-~l~~LkhLDlsyN  219 (1096)
T KOG1859|consen  185 LLPALESLNLSHN-KFTKVD--NLR-RLPKLKHLDLSYN  219 (1096)
T ss_pred             HHHHhhhhccchh-hhhhhH--HHH-hcccccccccccc
Confidence            3467888888884 454433  333 7888888888763

>KOG1259|consensus

Probab=97.24  E-value=0.00032  Score=51.42  Aligned_cols=109  Identities=19%  Similarity=0.141  Sum_probs=68.0

Q ss_pred             HHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCC
Q psy9589          10 LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGC   89 (163)
Q Consensus        10 ~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   89 (163)
                      -.+-.|+++.|+++.|....-..    ...+++|++|++++|. .+.              +..+...+-+++.|.+++.
T Consensus       302 SvKL~Pkir~L~lS~N~i~~v~n----La~L~~L~~LDLS~N~-Ls~--------------~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  302 SVKLAPKLRRLILSQNRIRTVQN----LAELPQLQLLDLSGNL-LAE--------------CVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhhccceeEEeccccceeeehh----hhhcccceEeecccch-hHh--------------hhhhHhhhcCEeeeehhhh
Confidence            34567999999999976433333    3558999999999973 221              1223335678888888774


Q ss_pred             CCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589          90 SQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV  142 (163)
Q Consensus        90 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  142 (163)
                       .+  ..++.+. .+-+|..|+++++ .|..-....-..++|.|+.+.+.+|+
T Consensus       363 -~i--E~LSGL~-KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  363 -KI--ETLSGLR-KLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             -hH--hhhhhhH-hhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence             22  2233333 4567888888873 45432211112347888888888873

>PLN03150 hypothetical protein; Provisional

Probab=97.22  E-value=0.00085  Score=54.44  Aligned_cols=62  Identities=16%  Similarity=0.086  Sum_probs=30.6

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .+++|+.|+++++ .++......+. .+++|+.|+++++ .++...-..+.....++..+++.+|
T Consensus       464 ~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        464 SITSLEVLDLSYN-SFNGSIPESLG-QLTSLRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CCCCCCEEECCCC-CCCCCCchHHh-cCCCCCEEECcCC-cccccCChHHhhccccCceEEecCC
Confidence            4566777777664 34433333333 5667777777664 3432221222222234455555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.08  E-value=0.0051  Score=44.69  Aligned_cols=64  Identities=19%  Similarity=0.199  Sum_probs=46.3

Q ss_pred             hcCCCCceEecCCCCCCCHHHHHHHHH---hCCCCCEEEecCCCCCCHHHHHHHHHc-----CCCCCEEeccCC
Q psy9589          76 ENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQLHTLEVASCSQFTDTGFQALARN-----CRLLAKMDLEEC  141 (163)
Q Consensus        76 ~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~-----~~~L~~L~l~~~  141 (163)
                      ..+++|+.|++.. +.++-.+-..++.   .++.|+.|.+++|- ++..+.....+.     .|+|..|...++
T Consensus       211 ~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         211 FYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             HHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccchh-hccccHHHHHHHhhhhcCCCccccccchh
Confidence            3678999999988 5787777766654   35778999999984 555554444332     588998888886

>KOG0444|consensus

Probab=97.06  E-value=0.00023  Score=57.00  Aligned_cols=52  Identities=15%  Similarity=0.042  Sum_probs=25.1

Q ss_pred             HhCCcCCEEEecCCC--CCChHHHHHHHhcC----C---HHHHHHHHhcCCCCceEecCCC
Q psy9589          38 QRCHQLHTLEVASCS--QFTDTGFQALARGL----L---DSAVLSLAENCPNLYYLCLSGC   89 (163)
Q Consensus        38 ~~~~~L~~L~l~~~~--~~~~~~~~~l~~~~----~---~~~~~~~~~~~~~L~~L~l~~~   89 (163)
                      .+-+++-.|++|+|.  .|++.-+-.+....    +   -+.+..-.+++.+|++|+|++.
T Consensus       123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN  183 (1255)
T ss_pred             hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence            345667778887762  23333332222211    1   1222222345667777777774

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.04  E-value=0.00086  Score=34.74  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=20.3

Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589         105 HQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT  145 (163)
Q Consensus       105 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  145 (163)
                      ++|++|+++++ .+++-+  ....++++|+.|++++| .++
T Consensus         1 ~~L~~L~l~~N-~i~~l~--~~l~~l~~L~~L~l~~N-~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLP--PELSNLPNLETLNLSNN-PIS   37 (44)
T ss_dssp             TT-SEEEETSS-S-SSHG--GHGTTCTTSSEEEETSS-CCS
T ss_pred             CcceEEEccCC-CCcccC--chHhCCCCCCEEEecCC-CCC
Confidence            46677777663 455422  21245677777777776 554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.83  E-value=0.0021  Score=33.25  Aligned_cols=37  Identities=30%  Similarity=0.253  Sum_probs=23.3

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCC
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFT   55 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~   55 (163)
                      ++|++|++++|. +++  +......+++|+.|++++| .++
T Consensus         1 ~~L~~L~l~~N~-i~~--l~~~l~~l~~L~~L~l~~N-~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQ-ITD--LPPELSNLPNLETLNLSNN-PIS   37 (44)
T ss_dssp             TT-SEEEETSSS--SS--HGGHGTTCTTSSEEEETSS-CCS
T ss_pred             CcceEEEccCCC-Ccc--cCchHhCCCCCCEEEecCC-CCC
Confidence            578888888865 444  2222356888888888887 444

...

>KOG1644|consensus

Probab=96.83  E-value=0.00049  Score=47.50  Aligned_cols=87  Identities=23%  Similarity=0.260  Sum_probs=45.1

Q ss_pred             HhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCC
Q psy9589          38 QRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQ  117 (163)
Q Consensus        38 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  117 (163)
                      .++++|..|.+..| +|+..+             ..+...+|+|+.|.+.+.+-..-.++..++ .||.|++|.+-+++ 
T Consensus        61 p~l~rL~tLll~nN-rIt~I~-------------p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Np-  124 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNN-RITRID-------------PDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNP-  124 (233)
T ss_pred             CCccccceEEecCC-cceeec-------------cchhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCc-
Confidence            45666777777665 444321             111123466777777664323333445555 67777777776643 


Q ss_pred             CCHHH-HHH-HHHcCCCCCEEeccC
Q psy9589         118 FTDTG-FQA-LARNCRLLAKMDLEE  140 (163)
Q Consensus       118 i~~~~-~~~-l~~~~~~L~~L~l~~  140 (163)
                      ++.+. ... +...+|+|+.||+..
T Consensus       125 v~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  125 VEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hhcccCceeEEEEecCcceEeehhh
Confidence            33321 111 122356777777654

>PLN03150 hypothetical protein; Provisional

Probab=96.80  E-value=0.0019  Score=52.45  Aligned_cols=64  Identities=16%  Similarity=0.140  Sum_probs=46.1

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT  145 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  145 (163)
                      .+++|+.|+|+++ .+.......+. .+++|+.|+++++ .++...-. ...++++|+.|++++| .++
T Consensus       440 ~L~~L~~L~Ls~N-~l~g~iP~~~~-~l~~L~~LdLs~N-~lsg~iP~-~l~~L~~L~~L~Ls~N-~l~  503 (623)
T PLN03150        440 KLRHLQSINLSGN-SIRGNIPPSLG-SITSLEVLDLSYN-SFNGSIPE-SLGQLTSLRILNLNGN-SLS  503 (623)
T ss_pred             CCCCCCEEECCCC-cccCcCChHHh-CCCCCCEEECCCC-CCCCCCch-HHhcCCCCCEEECcCC-ccc
Confidence            6789999999985 45433333344 7999999999985 56643322 3346899999999998 555

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.77  E-value=0.0011  Score=29.46  Aligned_cols=21  Identities=43%  Similarity=0.586  Sum_probs=9.2

Q ss_pred             CcCCEEEecCCCCCChHHHHHH
Q psy9589          41 HQLHTLEVASCSQFTDTGFQAL   62 (163)
Q Consensus        41 ~~L~~L~l~~~~~~~~~~~~~l   62 (163)
                      ++|++|+|++| .+++.|+..+
T Consensus         2 ~~L~~L~l~~n-~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNN-QITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSS-BEHHHHHHHH
T ss_pred             CCCCEEEccCC-cCCHHHHHHh
Confidence            44555555554 3555444444

...

>KOG2123|consensus

Probab=96.53  E-value=0.0013  Score=47.79  Aligned_cols=113  Identities=23%  Similarity=0.291  Sum_probs=65.8

Q ss_pred             CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589          14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT   93 (163)
Q Consensus        14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   93 (163)
                      +.+.++|++++|. ++|..   |....|.|++|.|+-| .|+.-.               -+.+|.+|+.|.|... .+.
T Consensus        18 l~~vkKLNcwg~~-L~DIs---ic~kMp~lEVLsLSvN-kIssL~---------------pl~rCtrLkElYLRkN-~I~   76 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDDIS---ICEKMPLLEVLSLSVN-KISSLA---------------PLQRCTRLKELYLRKN-CIE   76 (388)
T ss_pred             HHHhhhhcccCCC-ccHHH---HHHhcccceeEEeecc-ccccch---------------hHHHHHHHHHHHHHhc-ccc
Confidence            4578889998865 66644   4567899999999886 443211               1126777777777663 344


Q ss_pred             HH-HHHHHHHhCCCCCEEEecCCCCCCHHH--H-HHHHHcCCCCCEEeccCCCCCChHHHHH
Q psy9589          94 DA-SLIVLAQRCHQLHTLEVASCSQFTDTG--F-QALARNCRLLAKMDLEECVLITDATLIH  151 (163)
Q Consensus        94 ~~-~~~~l~~~~~~L~~L~l~~~~~i~~~~--~-~~l~~~~~~L~~L~l~~~~~l~~~~~~~  151 (163)
                      +. .+..+ +++|+|+.|-|..++-....+  . ....+.+|+|+-||=   ..++.+.+.+
T Consensus        77 sldEL~YL-knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn---v~VteeEle~  134 (388)
T KOG2123|consen   77 SLDELEYL-KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN---VPVTEEELEE  134 (388)
T ss_pred             cHHHHHHH-hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC---ccccHHHHHH
Confidence            33 23333 377777777776544332222  1 122345677776652   3455544443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.50  E-value=0.0025  Score=28.25  Aligned_cols=21  Identities=33%  Similarity=0.314  Sum_probs=9.6

Q ss_pred             CCCCEEeccCCCCCChHHHHHH
Q psy9589         131 RLLAKMDLEECVLITDATLIHL  152 (163)
Q Consensus       131 ~~L~~L~l~~~~~l~~~~~~~l  152 (163)
                      ++|+.|++++| .++++++..+
T Consensus         2 ~~L~~L~l~~n-~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNN-QITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSS-BEHHHHHHHH
T ss_pred             CCCCEEEccCC-cCCHHHHHHh
Confidence            44555555555 4555554443

...

>KOG1859|consensus

Probab=96.36  E-value=0.00041  Score=56.30  Aligned_cols=82  Identities=24%  Similarity=0.288  Sum_probs=38.1

Q ss_pred             HHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCC
Q psy9589          36 LAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC  115 (163)
Q Consensus        36 i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  115 (163)
                      -.+.+|.|++|+++.| .++...               ..+.|+.|++|||+++ .+....-.... +|. |..|.|+++
T Consensus       182 SLqll~ale~LnLshN-k~~~v~---------------~Lr~l~~LkhLDlsyN-~L~~vp~l~~~-gc~-L~~L~lrnN  242 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHN-KFTKVD---------------NLRRLPKLKHLDLSYN-CLRHVPQLSMV-GCK-LQLLNLRNN  242 (1096)
T ss_pred             HHHHHHHhhhhccchh-hhhhhH---------------HHHhcccccccccccc-hhccccccchh-hhh-heeeeeccc
Confidence            3344566677777665 333221               1235667777777663 22211111111 233 666666552


Q ss_pred             CCCCH-HHHHHHHHcCCCCCEEeccCC
Q psy9589         116 SQFTD-TGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus       116 ~~i~~-~~~~~l~~~~~~L~~L~l~~~  141 (163)
                       .++. -++    +++.+|+.||+++|
T Consensus       243 -~l~tL~gi----e~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  243 -ALTTLRGI----ENLKSLYGLDLSYN  264 (1096)
T ss_pred             -HHHhhhhH----HhhhhhhccchhHh
Confidence             2221 122    22455666666665

>KOG4308|consensus

Probab=96.35  E-value=0.0027  Score=49.86  Aligned_cols=129  Identities=26%  Similarity=0.348  Sum_probs=71.6

Q ss_pred             HHhcCCCCcEEeecCCCCCChHHHHHHHH-------hCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCC-C
Q psy9589          10 LAENCPNLYYLCLSGCSQLTDASLIVLAQ-------RCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPN-L   81 (163)
Q Consensus        10 ~~~~~~~L~~L~l~~~~~~~~~~l~~i~~-------~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-L   81 (163)
                      .....+.++.++++.|... +.+...+.+       ...+++.|++.+| .++......+..         ..+..+. +
T Consensus       167 ~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~---------~l~~~~~~~  235 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDE---------VLASGESLL  235 (478)
T ss_pred             HHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHH---------HHhccchhh
Confidence            3344777777777776654 333322222       2445777888777 555443333221         1223333 5


Q ss_pred             ceEecCCCCCCCHHHHHHHHHhCC----CCCEEEecCCCCCCHHHHHHHHH---cCCCCCEEeccCCCCCChHHHHHH
Q psy9589          82 YYLCLSGCSQLTDASLIVLAQRCH----QLHTLEVASCSQFTDTGFQALAR---NCRLLAKMDLEECVLITDATLIHL  152 (163)
Q Consensus        82 ~~L~l~~~~~~~~~~~~~l~~~~~----~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l  152 (163)
                      ..|++.. +.+.|.++..+...++    .++.++++.| .+++.+...+.+   .+++++.+.++.+ .+.+.+...+
T Consensus       236 ~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~  310 (478)
T KOG4308|consen  236 RELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELL  310 (478)
T ss_pred             HHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHH
Confidence            5577766 4566666666665443    4477777774 466555444433   3667777777776 5555544433

>KOG3763|consensus

Probab=96.32  E-value=0.01  Score=46.81  Aligned_cols=90  Identities=18%  Similarity=0.177  Sum_probs=46.6

Q ss_pred             HHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCC--CCCCHHHHHHHHHhCCCCCEEE
Q psy9589          34 IVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGC--SQLTDASLIVLAQRCHQLHTLE  111 (163)
Q Consensus        34 ~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~~L~~L~  111 (163)
                      +++....|.+..+++++|..-.-+++..+++            ..|+|+.|+|++.  ...++..+..+.  ...|++|-
T Consensus       211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq------------~apklk~L~LS~N~~~~~~~~el~K~k--~l~Leel~  276 (585)
T KOG3763|consen  211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQ------------IAPKLKTLDLSHNHSKISSESELDKLK--GLPLEELV  276 (585)
T ss_pred             HHhhcCCcceeeeecccchhhchhhhhHHHH------------hcchhheeecccchhhhcchhhhhhhc--CCCHHHee
Confidence            3444556677777777664444444444443            5677777777764  112222222222  45577777


Q ss_pred             ecCCCCCC---H--HHHHHHHHcCCCCCEEe
Q psy9589         112 VASCSQFT---D--TGFQALARNCRLLAKMD  137 (163)
Q Consensus       112 l~~~~~i~---~--~~~~~l~~~~~~L~~L~  137 (163)
                      +.+++-.+   +  +.+.++.+.+|+|..||
T Consensus       277 l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  277 LEGNPLCTTFSDRSEYVSAIRELFPKLLRLD  307 (585)
T ss_pred             ecCCccccchhhhHHHHHHHHHhcchheeec
Confidence            76644222   1  12344445567666664

>KOG0444|consensus

Probab=96.18  E-value=0.00057  Score=54.89  Aligned_cols=40  Identities=25%  Similarity=0.243  Sum_probs=28.6

Q ss_pred             hCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589         103 RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT  145 (163)
Q Consensus       103 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  145 (163)
                      +|+.|+.|.++.+.-||-.....+   ++.|+.||+..|+++-
T Consensus       337 RC~kL~kL~L~~NrLiTLPeaIHl---L~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  337 RCVKLQKLKLDHNRLITLPEAIHL---LPDLKVLDLRENPNLV  376 (1255)
T ss_pred             hhHHHHHhcccccceeechhhhhh---cCCcceeeccCCcCcc
Confidence            688888888887666664332333   5789999999887654

>KOG3763|consensus

Probab=95.99  E-value=0.015  Score=45.84  Aligned_cols=93  Identities=23%  Similarity=0.249  Sum_probs=67.2

Q ss_pred             HHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCC-CCCHH-HHHHHHHcCCCCCEEeccCCCCCCh
Q psy9589          69 SAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS-QFTDT-GFQALARNCRLLAKMDLEECVLITD  146 (163)
Q Consensus        69 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~i~~~-~~~~l~~~~~~L~~L~l~~~~~l~~  146 (163)
                      ..+..+-...|.+.++.+++..-..-+.+..+.+..|+|+.|+|+++. .+..+ .+..+  ...-|++|.+.+|+-.+.
T Consensus       208 ~~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~t  285 (585)
T KOG3763|consen  208 AVLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTT  285 (585)
T ss_pred             HHHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccc
Confidence            334555568899999999997656667888899899999999999852 33332 22222  256799999999854432


Q ss_pred             -----HHHHHHHhCCCCCccCC
Q psy9589         147 -----ATLIHLALGCPRLEKLI  163 (163)
Q Consensus       147 -----~~~~~l~~~~~~L~~L~  163 (163)
                           +-+.++.+.+|+|..||
T Consensus       286 f~~~s~yv~~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  286 FSDRSEYVSAIRELFPKLLRLD  307 (585)
T ss_pred             hhhhHHHHHHHHHhcchheeec
Confidence                 34567788999998876

>KOG1644|consensus

Probab=95.86  E-value=0.0041  Score=43.07  Aligned_cols=89  Identities=24%  Similarity=0.245  Sum_probs=58.2

Q ss_pred             HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589          11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS   90 (163)
Q Consensus        11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   90 (163)
                      ..+++.|..|.+.+|.. +... ..+...+|+|+.|.+.+|.-..-..+..+             ..||.|++|.+-+.+
T Consensus        60 lp~l~rL~tLll~nNrI-t~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-------------a~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRI-TRID-PDLDTFLPNLKTLILTNNSIQELGDLDPL-------------ASCPKLEYLTLLGNP  124 (233)
T ss_pred             CCCccccceEEecCCcc-eeec-cchhhhccccceEEecCcchhhhhhcchh-------------ccCCccceeeecCCc
Confidence            35789999999988653 3311 13556789999999999732211112222             268999999998843


Q ss_pred             CCCHHHHH--HHHHhCCCCCEEEecCC
Q psy9589          91 QLTDASLI--VLAQRCHQLHTLEVASC  115 (163)
Q Consensus        91 ~~~~~~~~--~l~~~~~~L~~L~l~~~  115 (163)
                       +....-.  .+...+|+|+.|++.+.
T Consensus       125 -v~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  125 -VEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             -hhcccCceeEEEEecCcceEeehhhh
Confidence             4443222  33456899999999763

>KOG4308|consensus

Probab=95.73  E-value=0.0099  Score=46.77  Aligned_cols=149  Identities=31%  Similarity=0.418  Sum_probs=70.6

Q ss_pred             HHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCc----CCEEEecCCCCCChHHHHHHHhcC----------------C
Q psy9589           8 LSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQ----LHTLEVASCSQFTDTGFQALARGL----------------L   67 (163)
Q Consensus         8 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~----L~~L~l~~~~~~~~~~~~~l~~~~----------------~   67 (163)
                      .......+.|..|+++++. +.+.....+....+.    ++.|.+..| .++..|...++...                .
T Consensus       108 ~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~  185 (478)
T KOG4308|consen  108 AQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNGLI  185 (478)
T ss_pred             HHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhcccc
Confidence            3344455666666666644 345555555543332    455555554 44444444443322                0


Q ss_pred             HHHHHHHH---h----cCCCCceEecCCCCCCCHHHHHHHHHh---CCC-CCEEEecCCCCCCHHHHHHHHHcC----CC
Q psy9589          68 DSAVLSLA---E----NCPNLYYLCLSGCSQLTDASLIVLAQR---CHQ-LHTLEVASCSQFTDTGFQALARNC----RL  132 (163)
Q Consensus        68 ~~~~~~~~---~----~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~-L~~L~l~~~~~i~~~~~~~l~~~~----~~  132 (163)
                      ..+...+.   +    ...++++|++.+| .++......+..-   .+. +..+++.. +.+.+.++..+.+.+    +.
T Consensus       186 ~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~  263 (478)
T KOG4308|consen  186 ELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSET  263 (478)
T ss_pred             hhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcccchh
Confidence            11111111   1    2235666666665 3444443333322   233 44466654 456666655555443    35


Q ss_pred             CCEEeccCCCCCChHHHH---HHHhCCCCCcc
Q psy9589         133 LAKMDLEECVLITDATLI---HLALGCPRLEK  161 (163)
Q Consensus       133 L~~L~l~~~~~l~~~~~~---~l~~~~~~L~~  161 (163)
                      ++.++++.| .+++.+..   +....|++++.
T Consensus       264 l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~  294 (478)
T KOG4308|consen  264 LRVLDLSRN-SITEKGVRDLAEVLVSCRQLEE  294 (478)
T ss_pred             hhhhhhhcC-CccccchHHHHHHHhhhHHHHH
Confidence            577788877 55554433   33334444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.43  E-value=0.016  Score=48.25  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=15.9

Q ss_pred             cCCCCCEEeccCCCCCChHHHHHH
Q psy9589         129 NCRLLAKMDLEECVLITDATLIHL  152 (163)
Q Consensus       129 ~~~~L~~L~l~~~~~l~~~~~~~l  152 (163)
                      .++.|+.|++++| .++......+
T Consensus       443 ~L~~L~~LdLs~N-~Ls~~~~~~L  465 (788)
T PRK15387        443 HLSSETTVNLEGN-PLSERTLQAL  465 (788)
T ss_pred             hccCCCeEECCCC-CCCchHHHHH
Confidence            4678888888887 6776544433

>KOG4579|consensus

Probab=95.42  E-value=0.0046  Score=40.42  Aligned_cols=114  Identities=20%  Similarity=0.305  Sum_probs=64.9

Q ss_pred             HHHHhcC---CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceE
Q psy9589           8 LSLAENC---PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYL   84 (163)
Q Consensus         8 ~~~~~~~---~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L   84 (163)
                      ...+++|   ..+..++|+.|..---............|+..++++|      +++.+.        .++-..+|.++.|
T Consensus        17 ~evVercedakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N------~fk~fp--------~kft~kf~t~t~l   82 (177)
T KOG4579|consen   17 NEVVERCEDAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN------GFKKFP--------KKFTIKFPTATTL   82 (177)
T ss_pred             HHHHHhhHHHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccc------hhhhCC--------HHHhhccchhhhh
Confidence            3444445   4667778877753211222222334667888888886      222111        1233367788999


Q ss_pred             ecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          85 CLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        85 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      ++.+ +.+++.... ++ .+|.|++|+++.++ +.... ..++. +.++-.|+.-.+
T Consensus        83 Nl~~-neisdvPeE-~A-am~aLr~lNl~~N~-l~~~p-~vi~~-L~~l~~Lds~~n  133 (177)
T KOG4579|consen   83 NLAN-NEISDVPEE-LA-AMPALRSLNLRFNP-LNAEP-RVIAP-LIKLDMLDSPEN  133 (177)
T ss_pred             hcch-hhhhhchHH-Hh-hhHHhhhcccccCc-cccch-HHHHH-HHhHHHhcCCCC
Confidence            9988 456665444 55 78999999998854 33222 22333 445566666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.40  E-value=0.039  Score=46.00  Aligned_cols=34  Identities=32%  Similarity=0.324  Sum_probs=19.3

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCC
Q psy9589          79 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFT  119 (163)
Q Consensus        79 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~  119 (163)
                      +.|+.|+++++ .++.     +....++|+.|+++++ .++
T Consensus       282 ~~L~~L~Ls~N-~Lt~-----LP~~p~~L~~LdLS~N-~L~  315 (788)
T PRK15387        282 SGLCKLWIFGN-QLTS-----LPVLPPGLQELSVSDN-QLA  315 (788)
T ss_pred             hhcCEEECcCC-cccc-----ccccccccceeECCCC-ccc
Confidence            35666666663 2331     1223467888888774 344

>KOG0472|consensus

Probab=95.39  E-value=0.014  Score=44.64  Aligned_cols=41  Identities=22%  Similarity=0.092  Sum_probs=28.5

Q ss_pred             HHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589           8 LSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus         8 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      .....++++|..|++++|. +.+-..+-.  ....|+.|+++.+
T Consensus       428 ~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~--~lv~Lq~LnlS~N  468 (565)
T KOG0472|consen  428 PLELSQLQKLTFLDLSNNL-LNDLPEEMG--SLVRLQTLNLSFN  468 (565)
T ss_pred             hHHHHhhhcceeeecccch-hhhcchhhh--hhhhhheeccccc
Confidence            3456788999999998854 566554422  2455899999887

>KOG4658|consensus

Probab=95.35  E-value=0.018  Score=48.71  Aligned_cols=12  Identities=17%  Similarity=0.312  Sum_probs=6.8

Q ss_pred             hCCCCCEEEecC
Q psy9589         103 RCHQLHTLEVAS  114 (163)
Q Consensus       103 ~~~~L~~L~l~~  114 (163)
                      .+++|++|.+-.
T Consensus       640 ~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  640 ELQSLRVLRLPR  651 (889)
T ss_pred             hcccccEEEeec
Confidence            455666666644

>KOG4658|consensus

Probab=95.15  E-value=0.043  Score=46.48  Aligned_cols=110  Identities=19%  Similarity=0.173  Sum_probs=59.6

Q ss_pred             hcCCCCcEEeecCCCC-CChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQ-LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS   90 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~-~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   90 (163)
                      ..+|+|++|-+..+.. +.... ..+....|.|+.|++++|.....-              +.....+-+|++|++++. 
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is-~~ff~~m~~LrVLDLs~~~~l~~L--------------P~~I~~Li~LryL~L~~t-  605 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEIS-GEFFRSLPLLRVLDLSGNSSLSKL--------------PSSIGELVHLRYLDLSDT-  605 (889)
T ss_pred             CCCCccceEEEeecchhhhhcC-HHHHhhCcceEEEECCCCCccCcC--------------ChHHhhhhhhhcccccCC-
Confidence            4567788887766442 11111 123456888888888886543211              000113457888888774 


Q ss_pred             CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .+.  .+..-...+..|.+|++..+.....  +......++.|++|.+...
T Consensus       606 ~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  606 GIS--HLPSGLGNLKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             Ccc--ccchHHHHHHhhheecccccccccc--ccchhhhcccccEEEeecc
Confidence            344  1222122566778888876432221  1223333678888888764

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=95.15  E-value=0.035  Score=25.57  Aligned_cols=21  Identities=29%  Similarity=0.295  Sum_probs=9.9

Q ss_pred             CCCEEeccCCCCCChHHHHHHH
Q psy9589         132 LLAKMDLEECVLITDATLIHLA  153 (163)
Q Consensus       132 ~L~~L~l~~~~~l~~~~~~~l~  153 (163)
                      +|++|++++| .++++++..+.
T Consensus         3 ~L~~LdL~~N-~i~~~G~~~L~   23 (28)
T smart00368        3 SLRELDLSNN-KLGDEGARALA   23 (28)
T ss_pred             ccCEEECCCC-CCCHHHHHHHH
Confidence            4455555554 44444444433

>KOG0617|consensus

Probab=94.98  E-value=0.00038  Score=47.08  Aligned_cols=12  Identities=33%  Similarity=0.276  Sum_probs=7.2

Q ss_pred             cCCCCceEecCC
Q psy9589          77 NCPNLYYLCLSG   88 (163)
Q Consensus        77 ~~~~L~~L~l~~   88 (163)
                      .+|-|+.|++++
T Consensus       100 s~p~levldlty  111 (264)
T KOG0617|consen  100 SFPALEVLDLTY  111 (264)
T ss_pred             CCchhhhhhccc
Confidence            456666666655

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=94.91  E-value=0.05  Score=25.05  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=12.3

Q ss_pred             CcCCEEEecCCCCCChHHHHHHHh
Q psy9589          41 HQLHTLEVASCSQFTDTGFQALAR   64 (163)
Q Consensus        41 ~~L~~L~l~~~~~~~~~~~~~l~~   64 (163)
                      ++|++|+|++| .+.+.|...+++
T Consensus         2 ~~L~~LdL~~N-~i~~~G~~~L~~   24 (28)
T smart00368        2 PSLRELDLSNN-KLGDEGARALAE   24 (28)
T ss_pred             CccCEEECCCC-CCCHHHHHHHHH
Confidence            34556666554 455555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.54  E-value=0.08  Score=40.90  Aligned_cols=37  Identities=14%  Similarity=0.346  Sum_probs=24.3

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQF   54 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~   54 (163)
                      ..++++++|++++|. ++.-.     ..-++|++|.+++|..+
T Consensus        49 ~~~~~l~~L~Is~c~-L~sLP-----~LP~sLtsL~Lsnc~nL   85 (426)
T PRK15386         49 EEARASGRLYIKDCD-IESLP-----VLPNELTEITIENCNNL   85 (426)
T ss_pred             HHhcCCCEEEeCCCC-CcccC-----CCCCCCcEEEccCCCCc
Confidence            446889999998873 32211     22236899999888654

>KOG0531|consensus

Probab=94.52  E-value=0.012  Score=45.44  Aligned_cols=104  Identities=20%  Similarity=0.171  Sum_probs=51.5

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCCh-HHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD-TGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS   90 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   90 (163)
                      ..+.+|+.|++.++..   ..+..+...+++|++|+++++ .|+. .++.                .++.|+.|++.++.
T Consensus        92 ~~~~~l~~l~l~~n~i---~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~----------------~l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKI---EKIENLLSSLVNLQVLDLSFN-KITKLEGLS----------------TLTLLKELNLSGNL  151 (414)
T ss_pred             ccccceeeeeccccch---hhcccchhhhhcchheecccc-ccccccchh----------------hccchhhheeccCc
Confidence            3456777777766432   111122455777888888776 3332 2222                33446666666642


Q ss_pred             CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                       +.+.  ..+. .++.|+.++++++ .+++..-.. ...+..|+.+++..+
T Consensus       152 -i~~~--~~~~-~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  152 -ISDI--SGLE-SLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGN  196 (414)
T ss_pred             -chhc--cCCc-cchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCC
Confidence             2211  1111 2556666666663 233322101 234566666666665

>KOG4237|consensus

Probab=93.99  E-value=0.033  Score=42.56  Aligned_cols=15  Identities=13%  Similarity=0.259  Sum_probs=10.0

Q ss_pred             HHhCCcCCEEEecCC
Q psy9589          37 AQRCHQLHTLEVASC   51 (163)
Q Consensus        37 ~~~~~~L~~L~l~~~   51 (163)
                      ...+|+|+.|++++|
T Consensus       270 f~~L~~L~~lnlsnN  284 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNN  284 (498)
T ss_pred             HhhcccceEeccCCC
Confidence            345677777777765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=93.81  E-value=0.18  Score=42.06  Aligned_cols=67  Identities=13%  Similarity=0.179  Sum_probs=34.8

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCH--HHHHHHHHcCCCCCEEeccCCCCCChHHHHHH
Q psy9589          79 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD--TGFQALARNCRLLAKMDLEECVLITDATLIHL  152 (163)
Q Consensus        79 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~--~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  152 (163)
                      +.|+.|+++++. ++... ..+.   +.|+.|+++++ .++.  ..+..+...++.+..|++.+| .++...+..+
T Consensus       367 ~~L~~LdLs~N~-Lt~LP-~~l~---~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~N-pls~~tl~~L  435 (754)
T PRK15370        367 PTITTLDVSRNA-LTNLP-ENLP---AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYN-PFSERTIQNM  435 (754)
T ss_pred             CCcCEEECCCCc-CCCCC-HhHH---HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCC-CccHHHHHHH
Confidence            467777776642 33110 1111   24666666653 3331  123334444577888888887 6666555443

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.56  E-value=0.055  Score=24.49  Aligned_cols=26  Identities=27%  Similarity=0.247  Sum_probs=20.4

Q ss_pred             CCcEEeecCCCCCChHHHHHHHHhCC
Q psy9589          16 NLYYLCLSGCSQLTDASLIVLAQRCH   41 (163)
Q Consensus        16 ~L~~L~l~~~~~~~~~~l~~i~~~~~   41 (163)
                      +|++|.|..+.+.++..++.+.+.||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            47888888877766678888888776

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG0617|consensus

Probab=93.52  E-value=0.00079  Score=45.60  Aligned_cols=82  Identities=17%  Similarity=0.163  Sum_probs=47.2

Q ss_pred             CCCCcEEeecCCCC--CChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          14 CPNLYYLCLSGCSQ--LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        14 ~~~L~~L~l~~~~~--~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      +.+++.|.++++..  +.+    .|+. +.+|+.|+++++ .+.+-              ..-...+|.|++|+++-. .
T Consensus        32 ~s~ITrLtLSHNKl~~vpp----nia~-l~nlevln~~nn-qie~l--------------p~~issl~klr~lnvgmn-r   90 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPP----NIAE-LKNLEVLNLSNN-QIEEL--------------PTSISSLPKLRILNVGMN-R   90 (264)
T ss_pred             hhhhhhhhcccCceeecCC----cHHH-hhhhhhhhcccc-hhhhc--------------Chhhhhchhhhheecchh-h
Confidence            45677777877653  112    1222 678888888876 33221              111236789999988752 2


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCC
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFT  119 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~  119 (163)
                      +.- ....++ .+|.|+.|++.++ +++
T Consensus        91 l~~-lprgfg-s~p~levldltyn-nl~  115 (264)
T KOG0617|consen   91 LNI-LPRGFG-SFPALEVLDLTYN-NLN  115 (264)
T ss_pred             hhc-CccccC-CCchhhhhhcccc-ccc
Confidence            211 011122 5789999999874 444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.45  E-value=0.092  Score=21.12  Aligned_cols=11  Identities=27%  Similarity=0.317  Sum_probs=6.4

Q ss_pred             CCCCEEeccCC
Q psy9589         131 RLLAKMDLEEC  141 (163)
Q Consensus       131 ~~L~~L~l~~~  141 (163)
                      ++|+.|++++|
T Consensus         1 ~~L~~L~l~~n   11 (17)
T PF13504_consen    1 PNLRTLDLSNN   11 (17)
T ss_dssp             TT-SEEEETSS
T ss_pred             CccCEEECCCC
Confidence            35666677666

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=91.82  E-value=0.64  Score=39.00  Aligned_cols=32  Identities=19%  Similarity=0.098  Sum_probs=16.1

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      ++|+.|++++|. ++.-..    ..+++|+.|++++|
T Consensus       199 ~~L~~L~Ls~N~-LtsLP~----~l~~nL~~L~Ls~N  230 (754)
T PRK15370        199 EQITTLILDNNE-LKSLPE----NLQGNIKTLYANSN  230 (754)
T ss_pred             cCCcEEEecCCC-CCcCCh----hhccCCCEEECCCC
Confidence            356666666643 222111    11346777777665

>KOG3735|consensus

Probab=91.07  E-value=0.98  Score=33.86  Aligned_cols=73  Identities=12%  Similarity=0.179  Sum_probs=37.1

Q ss_pred             CChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC-------------------CHHHHHHHHhcCCCCceEecCC
Q psy9589          28 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL-------------------LDSAVLSLAENCPNLYYLCLSG   88 (163)
Q Consensus        28 ~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-------------------~~~~~~~~~~~~~~L~~L~l~~   88 (163)
                      ..+..++.+...=|+|+.++++....++..-+..++...                   ....+..+.+.++.|++|++.+
T Consensus       185 ~~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnves  264 (353)
T KOG3735|consen  185 DVESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVES  264 (353)
T ss_pred             hHHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccc
Confidence            344455555555566666666666666655555444322                   0111222334455555555555


Q ss_pred             CCCCCHHHHHHHH
Q psy9589          89 CSQLTDASLIVLA  101 (163)
Q Consensus        89 ~~~~~~~~~~~l~  101 (163)
                       ..++..++.++.
T Consensus       265 -nFItg~gi~a~~  276 (353)
T KOG3735|consen  265 -NFITGLGIMALL  276 (353)
T ss_pred             -cccccHHHHHHH
Confidence             455555555554

>KOG4579|consensus

Probab=90.90  E-value=0.098  Score=34.38  Aligned_cols=61  Identities=16%  Similarity=0.115  Sum_probs=38.5

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV  142 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  142 (163)
                      ....|+..+|++. .+.+ ....+...+|-++.|++.. +.+++-..+ + ..+|.|+.|+++.|+
T Consensus        51 ~~~el~~i~ls~N-~fk~-fp~kft~kf~t~t~lNl~~-neisdvPeE-~-Aam~aLr~lNl~~N~  111 (177)
T KOG4579|consen   51 KGYELTKISLSDN-GFKK-FPKKFTIKFPTATTLNLAN-NEISDVPEE-L-AAMPALRSLNLRFNP  111 (177)
T ss_pred             CCceEEEEecccc-hhhh-CCHHHhhccchhhhhhcch-hhhhhchHH-H-hhhHHhhhcccccCc
Confidence            3456777777773 2321 2224444677788888877 456665544 3 347889999999883

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=90.33  E-value=0.25  Score=37.74  Aligned_cols=13  Identities=15%  Similarity=0.220  Sum_probs=7.1

Q ss_pred             hCCcCCEEEecCC
Q psy9589          39 RCHQLHTLEVASC   51 (163)
Q Consensus        39 ~~~~L~~L~l~~~   51 (163)
                      .+|+|+.|+++.|
T Consensus       161 ~l~~L~~L~l~~N  173 (394)
T COG4886         161 NLPNLKNLDLSFN  173 (394)
T ss_pred             ccccccccccCCc
Confidence            3555555555554

>KOG0531|consensus

Probab=88.56  E-value=0.13  Score=39.83  Aligned_cols=83  Identities=23%  Similarity=0.146  Sum_probs=53.9

Q ss_pred             HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCCh-HHHHHHHhcCCHHHHHHHHhcCCCCceEecCCC
Q psy9589          11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD-TGFQALARGLLDSAVLSLAENCPNLYYLCLSGC   89 (163)
Q Consensus        11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   89 (163)
                      ...+++|++|+++++...+-..+.    .++.|+.|++++|. ++. .++                +.++.|+.++++++
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~-i~~~~~~----------------~~l~~L~~l~l~~n  172 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNL-ISDISGL----------------ESLKSLKLLDLSYN  172 (414)
T ss_pred             hhhhhcchheeccccccccccchh----hccchhhheeccCc-chhccCC----------------ccchhhhcccCCcc
Confidence            456899999999997654445553    35669999999983 332 121                13567888888874


Q ss_pred             CCCCHHHHHHHHHhCCCCCEEEecCCC
Q psy9589          90 SQLTDASLIVLAQRCHQLHTLEVASCS  116 (163)
Q Consensus        90 ~~~~~~~~~~l~~~~~~L~~L~l~~~~  116 (163)
                       .+.+..... ...+..++.+.++++.
T Consensus       173 -~i~~ie~~~-~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  173 -RIVDIENDE-LSELISLEELDLGGNS  197 (414)
T ss_pred             -hhhhhhhhh-hhhccchHHHhccCCc
Confidence             344333311 3367788888887743

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=86.23  E-value=0.35  Score=20.68  Aligned_cols=13  Identities=31%  Similarity=0.266  Sum_probs=10.3

Q ss_pred             CCCEEeccCCCCCC
Q psy9589         132 LLAKMDLEECVLIT  145 (163)
Q Consensus       132 ~L~~L~l~~~~~l~  145 (163)
                      +|++|++++| .++
T Consensus         1 ~L~~Ldls~n-~l~   13 (22)
T PF00560_consen    1 NLEYLDLSGN-NLT   13 (22)
T ss_dssp             TESEEEETSS-EES
T ss_pred             CccEEECCCC-cCE
Confidence            4788899988 665

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3735|consensus

Probab=84.54  E-value=3.8  Score=30.87  Aligned_cols=88  Identities=15%  Similarity=0.235  Sum_probs=60.7

Q ss_pred             HHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHh---CCCCCEEEecCCCCCCHH---HHHHHHHcCCCCCEEeccCCC
Q psy9589          69 SAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQR---CHQLHTLEVASCSQFTDT---GFQALARNCRLLAKMDLEECV  142 (163)
Q Consensus        69 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~i~~~---~~~~l~~~~~~L~~L~l~~~~  142 (163)
                      ..+..+-..-|.++..++++...+....+..+...   ..+.+...+.+. ..++.   ++..+.+.++.|++|+++++ 
T Consensus       188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnvesn-  265 (353)
T KOG3735|consen  188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVESN-  265 (353)
T ss_pred             HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheecccc-
Confidence            44455555668999999999888887777666543   356677777653 33332   34445566889999999997 


Q ss_pred             CCChHHHHHHHhCCCC
Q psy9589         143 LITDATLIHLALGCPR  158 (163)
Q Consensus       143 ~l~~~~~~~l~~~~~~  158 (163)
                      -||..++.++++.++.
T Consensus       266 FItg~gi~a~~~al~~  281 (353)
T KOG3735|consen  266 FITGLGIMALLRALQS  281 (353)
T ss_pred             ccccHHHHHHHHHHhc
Confidence            8888888777665443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=84.49  E-value=0.73  Score=35.22  Aligned_cols=59  Identities=25%  Similarity=0.289  Sum_probs=30.6

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .+|+|+.|+++++ .+++....  ....+.|+.|+++++ .+++-...  ......|++|.++++
T Consensus       161 ~l~~L~~L~l~~N-~l~~l~~~--~~~~~~L~~L~ls~N-~i~~l~~~--~~~~~~L~~l~~~~N  219 (394)
T COG4886         161 NLPNLKNLDLSFN-DLSDLPKL--LSNLSNLNNLDLSGN-KISDLPPE--IELLSALEELDLSNN  219 (394)
T ss_pred             ccccccccccCCc-hhhhhhhh--hhhhhhhhheeccCC-ccccCchh--hhhhhhhhhhhhcCC
Confidence            6778888888774 34332221  114677777777773 34432211  011233555555554

>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function

Probab=83.34  E-value=0.87  Score=28.83  Aligned_cols=108  Identities=15%  Similarity=0.300  Sum_probs=57.6

Q ss_pred             HHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEec
Q psy9589          34 IVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVA  113 (163)
Q Consensus        34 ~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~  113 (163)
                      ..+...|++++ .++..-.....            ..+..++..++.| ..+|+.-..-....+..++.+|+.|.. +++
T Consensus         4 ~~~F~~~~~l~-~~i~~~dts~v------------t~m~~mF~~~~~l-~~~l~~w~~s~vt~m~~mF~~~~~l~~-dls   68 (120)
T PF03382_consen    4 SSMFANCTNLN-IDISNWDTSNV------------TDMSYMFYGCTSL-NQDLSNWDTSNVTNMSGMFAGCSSLNQ-DLS   68 (120)
T ss_pred             HHHHHhchhcc-CCccccccccc------------eeHHHHhhcchhc-cCChhhhcchhheeHHHHHhhhhhcCC-Ccc
Confidence            44556677776 66655422212            2334455566666 223433111122345667778888888 775


Q ss_pred             C--CCCCCHHHHHHHHHcCCCCCEEeccCCCCCCh-HHHHHHHhCCCCCc
Q psy9589         114 S--CSQFTDTGFQALARNCRLLAKMDLEECVLITD-ATLIHLALGCPRLE  160 (163)
Q Consensus       114 ~--~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~  160 (163)
                      .  ..+++  .+..+..++..| ..+++.- .+.. ..+...+..|+.|+
T Consensus        69 ~w~~s~v~--~~~~mF~~~~~l-~~~l~~w-n~~~v~~~~~mF~~~~~l~  114 (120)
T PF03382_consen   69 NWDTSNVT--NMSNMFSGCSSL-NQDLSNW-NTSSVTNMSSMFANCSNLN  114 (120)
T ss_pred             cccccccc--cHHHHHhhhHHc-CCchhhc-cccccccHHHHHhChHhcc
Confidence            4  33344  345666667777 5556532 2222 23566777777665

Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.

>KOG0472|consensus

Probab=83.15  E-value=0.38  Score=37.21  Aligned_cols=42  Identities=17%  Similarity=0.230  Sum_probs=27.3

Q ss_pred             HHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589         100 LAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT  145 (163)
Q Consensus       100 l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  145 (163)
                      +.+.+++|..|++.+ +++++..-+...  +.+|++||+++| .|+
T Consensus       247 ~~~~L~~l~vLDLRd-Nklke~Pde~cl--LrsL~rLDlSNN-~is  288 (565)
T KOG0472|consen  247 HLKHLNSLLVLDLRD-NKLKEVPDEICL--LRSLERLDLSNN-DIS  288 (565)
T ss_pred             Hhcccccceeeeccc-cccccCchHHHH--hhhhhhhcccCC-ccc
Confidence            344678889999987 456643322111  467889999887 554

>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function

Probab=82.92  E-value=1.1  Score=28.40  Aligned_cols=106  Identities=17%  Similarity=0.304  Sum_probs=53.4

Q ss_pred             HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589          11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS   90 (163)
Q Consensus        11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   90 (163)
                      -..+++|+ .++.......-..+..+...|+.| ..+|+.- ..+  .         ...+..++..++.|.. +++.-.
T Consensus         7 F~~~~~l~-~~i~~~dts~vt~m~~mF~~~~~l-~~~l~~w-~~s--~---------vt~m~~mF~~~~~l~~-dls~w~   71 (120)
T PF03382_consen    7 FANCTNLN-IDISNWDTSNVTDMSYMFYGCTSL-NQDLSNW-DTS--N---------VTNMSGMFAGCSSLNQ-DLSNWD   71 (120)
T ss_pred             HHhchhcc-CCccccccccceeHHHHhhcchhc-cCChhhh-cch--h---------heeHHHHHhhhhhcCC-Cccccc
Confidence            34566665 555553333334555566667766 3334332 111  1         1334555666777777 675422


Q ss_pred             CCCHHHHHHHHHhCCCCCEEEecC--CCCCCHHHHHHHHHcCCCCC
Q psy9589          91 QLTDASLIVLAQRCHQLHTLEVAS--CSQFTDTGFQALARNCRLLA  134 (163)
Q Consensus        91 ~~~~~~~~~l~~~~~~L~~L~l~~--~~~i~~~~~~~l~~~~~~L~  134 (163)
                      .-.......++.+|+.| ..+|+.  ..++++  +..+..+++.|+
T Consensus        72 ~s~v~~~~~mF~~~~~l-~~~l~~wn~~~v~~--~~~mF~~~~~l~  114 (120)
T PF03382_consen   72 TSNVTNMSNMFSGCSSL-NQDLSNWNTSSVTN--MSSMFANCSNLN  114 (120)
T ss_pred             ccccccHHHHHhhhHHc-CCchhhcccccccc--HHHHHhChHhcc
Confidence            12234567777778888 555543  233332  344555555443

Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=82.40  E-value=0.19  Score=31.70  Aligned_cols=119  Identities=19%  Similarity=0.404  Sum_probs=51.4

Q ss_pred             hcCCCCcEEeecCCC-CCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589          12 ENCPNLYYLCLSGCS-QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS   90 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~-~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   90 (163)
                      ..+++|+.+.+.... .+.+    .....+++|+.+.+.+.  +...+-.             .+..++.|+.+.+..  
T Consensus         9 ~~~~~l~~i~~~~~~~~I~~----~~F~~~~~l~~i~~~~~--~~~i~~~-------------~F~~~~~l~~i~~~~--   67 (129)
T PF13306_consen    9 YNCSNLESITFPNTIKKIGE----NAFSNCTSLKSINFPNN--LTSIGDN-------------AFSNCKSLESITFPN--   67 (129)
T ss_dssp             TT-TT--EEEETST--EE-T----TTTTT-TT-SEEEESST--TSCE-TT-------------TTTT-TT-EEEEETS--
T ss_pred             hCCCCCCEEEECCCeeEeCh----hhccccccccccccccc--cccccee-------------eeecccccccccccc--
Confidence            357789999987421 1222    23356889999999863  3322211             123577899999965  


Q ss_pred             CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC-CCCChHHHHHHHhCCCCCc
Q psy9589          91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC-VLITDATLIHLALGCPRLE  160 (163)
Q Consensus        91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~  160 (163)
                      .+...+- .....+++|+.+.+..  .++.-+...+ .++ .|+.+.+..+ ..+.+    ..+..|++|+
T Consensus        68 ~~~~i~~-~~F~~~~~l~~i~~~~--~~~~i~~~~f-~~~-~l~~i~~~~~~~~i~~----~~F~~~~~l~  129 (129)
T PF13306_consen   68 NLKSIGD-NAFSNCTNLKNIDIPS--NITEIGSSSF-SNC-NLKEINIPSNITKIEE----NAFKNCTKLK  129 (129)
T ss_dssp             TT-EE-T-TTTTT-TTECEEEETT--T-BEEHTTTT-TT--T--EEE-TTB-SS--------GGG------
T ss_pred             ccccccc-ccccccccccccccCc--cccEEchhhh-cCC-CceEEEECCCccEECC----ccccccccCC
Confidence            2221121 2233689999999965  2443222223 445 8899888753 23322    4456787775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
1fqv_A	336	Insights Into Scf Ubiquitin Ligases From The Struct		3e-04
1fs2_A	272	Insights Into Scf Ubiquitin Ligases From The Struct		5e-04
2p1m_B	594	Tir1-ask1 Complex Structure Length = 594		7e-04

>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 336

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 14/148 (9%)
Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
           V +LA+N  NL  L LSGCS  ++ +L  L   C +L  L ++ C  FT+   Q      
Sbjct: 135 VNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV----- 188
Query: 67  LDSAVLSLAENCPNLYYLCLSGCSQ-LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQA 125
              AV  ++E    +  L LSG  + L  + L  L +RC  L  L+++      +  FQ 
Sbjct: 189 ---AVAHVSE---TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242
Query: 126 LARNCRLLAKMDLEECVLITDATLIHLA 153
             +    L  + L  C  I   TL+ L 
Sbjct: 243 FFQ-LNYLQHLSLSRCYDIIPETLLELG 269

>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 272

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 21/170 (12%)
Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQ------ 60
           V +LA+N  NL  L LSGCS  ++ +L  L   C +L  L ++ C  FT+   Q      
Sbjct: 97  VNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 155
Query: 61  ----------ALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 110
                        + L  S + +L   CPNL +L LS    L +       Q   QL+ L
Sbjct: 156 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF----QEFFQLNYL 211
Query: 111 EVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLE 160
           +  S S+  D   + L     +     L+   ++ D TL  L    P L+
Sbjct: 212 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 261

>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 75/193 (38%), Gaps = 47/193 (24%)
Query: 4   FITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALA 63
           F  +  L   CPNL  L L+    L    L  L QR  QL  L           G+ A  
Sbjct: 200 FSALERLVTRCPNLKSLKLNRAVPLE--KLATLLQRAPQLEELGTG--------GYTAEV 249
Query: 64  RGLLDSAVLSLAENCPNLYYLCLSG---------------CSQLTDASL----------I 98
           R  + S +      C  L   CLSG               CS+LT  +L          +
Sbjct: 250 RPDVYSGLSVALSGCKELR--CLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307
Query: 99  VLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMD--------LEECVLITDATLI 150
            L  +C +L  L V       D G + LA  C+ L ++         +E  V +T+  L+
Sbjct: 308 KLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365
Query: 151 HLALGCPRLEKLI 163
            +++GCP+LE ++
Sbjct: 366 SVSMGCPKLESVL 378

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-28
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-25
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-23
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-15
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-14
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-25
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-24
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-21
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-21
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-19
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-18
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-17
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-25
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-24
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-21
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-21
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-19
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-19
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-19
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-14
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  105 bits (264), Expect = 3e-28
 Identities = 40/164 (24%), Positives = 60/164 (36%), Gaps = 20/164 (12%)

Query: 13  NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALA--------- 63
              NL  L LSGCS  ++ +L  L   C +L  L ++ C  FT+   Q            
Sbjct: 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199

Query: 64  -------RGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS 116
                  + L  S + +L   CPNL +L LS    L +        + + L  L ++ C 
Sbjct: 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCY 258

Query: 117 QFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLE 160
                    L     L     L+   ++ D TL  L    P L+
Sbjct: 259 DIIPETLLELGEIPTL---KTLQVFGIVPDGTLQLLKEALPHLQ 299

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 96.9 bits (241), Expect = 6e-25
 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 17/159 (10%)

Query: 6   TVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARG 65
           T+  +   C  L  L L G   L+D  +  LA +   L  L ++ CS F++   Q     
Sbjct: 109 TLHGILSQCSKLQNLSLEGLR-LSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQT---- 162

Query: 66  LLDSAVLSLAENCPNLYYLCLSGCSQLTDASL-IVLAQRCHQLHTLEVASCSQF-TDTGF 123
                   L  +C  L  L LS C   T+  + + +A     +  L ++   +    +  
Sbjct: 163 --------LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214

Query: 124 QALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
             L R C  L  +DL + V++ +            L+ L
Sbjct: 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHL 252

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 92.6 bits (230), Expect = 3e-23
 Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 17/157 (10%)

Query: 8   LSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLL 67
           L+   +   + ++ LS    +  ++L  +  +C +L  L +      +D     LA+   
Sbjct: 86  LAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAK--- 140

Query: 68  DSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQ-AL 126
                       NL  L LSGCS  ++ +L  L   C +L  L ++ C  FT+   Q A+
Sbjct: 141 ----------NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190

Query: 127 ARNCRLLAKMDLEECV-LITDATLIHLALGCPRLEKL 162
           A     + +++L      +  + L  L   CP L  L
Sbjct: 191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 69.9 bits (171), Expect = 5e-15
 Identities = 29/143 (20%), Positives = 47/143 (32%), Gaps = 35/143 (24%)

Query: 10  LAENCPNLYYLCLSGCSQ-LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLD 68
           +A     +  L LSG  + L  + L  L +RC  L  L+++      +  FQ   +    
Sbjct: 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ---- 245

Query: 69  SAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVA--------------- 113
                       L +L LS C  +   +L+ L +    L TL+V                
Sbjct: 246 ---------LNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGIVPDGTLQLLKEAL 295

Query: 114 -----SCSQFTDTGFQALARNCR 131
                +CS FT      +     
Sbjct: 296 PHLQINCSHFTTIARPTIGNKKN 318

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 68.4 bits (167), Expect = 2e-14
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 3/146 (2%)

Query: 18  YYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAEN 77
             L      +L    +I        +        S F           +  S +  +   
Sbjct: 57  KNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ 116

Query: 78  CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMD 137
           C  L  L L G   L+D  +  LA +   L  L ++ CS F++   Q L  +C  L +++
Sbjct: 117 CSKLQNLSLEGLR-LSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174

Query: 138 LEECVLITDATLIH-LALGCPRLEKL 162
           L  C   T+  +   +A     + +L
Sbjct: 175 LSWCFDFTEKHVQVAVAHVSETITQL 200

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 64.5 bits (157), Expect = 5e-13
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 16/112 (14%)

Query: 6   TVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARG 65
            + +L   CPNL +L LS    L +        + + L  L ++ C          L   
Sbjct: 213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEI 271

Query: 66  -----------LLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQ 106
                      + D  +  L E  P+L       CS  T  +   +  + +Q
Sbjct: 272 PTLKTLQVFGIVPDGTLQLLKEALPHLQI----NCSHFTTIARPTIGNKKNQ 319

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  100 bits (249), Expect = 2e-25
 Identities = 38/188 (20%), Positives = 64/188 (34%), Gaps = 35/188 (18%)

Query: 7   VLSLAENCPNLYYLCLSGCSQ----------LTDASLIVLAQRCHQLHTLEVASCSQFTD 56
           +  LA+ C  L  L +   +           ++   LI LAQ C +L  + V   S  T+
Sbjct: 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITN 392

Query: 57  TGFQALARGL---------------------LDSAVLSLAENCPNLYYLCLS-GCSQLTD 94
              +++   L                     LD+ V SL   C  L           LTD
Sbjct: 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452

Query: 95  ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLAL 154
             L  + Q    +  + +    + +D G    +R C  L K+++  C   ++  +     
Sbjct: 453 LGLSYIGQYSPNVRWMLLGYVGE-SDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVT 510

Query: 155 GCPRLEKL 162
             P L  L
Sbjct: 511 KLPSLRYL 518

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 95.4 bits (237), Expect = 9e-24
 Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 13/163 (7%)

Query: 8   LSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLL 67
            +L + CPNL  L       + D  L VLAQ C QL  L +   +       +     + 
Sbjct: 311 CTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG--LVS 366

Query: 68  DSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS-------QFTD 120
              +++LA+ C  L Y+ +   S +T+ SL  +      L    +              D
Sbjct: 367 QRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425

Query: 121 TGFQALARNCRLLAKMDLEE-CVLITDATLIHLALGCPRLEKL 162
            G ++L   C+ L +         +TD  L ++    P +  +
Sbjct: 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 88.5 bits (219), Expect = 2e-21
 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 14/167 (8%)

Query: 7   VLSLAENCPNLYYLCLS--GCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
           +  LA++  +L  L       ++++   L  +A+ C  L +++V         GF   A 
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243

Query: 65  GLLDSAVLSLAE---------NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 115
            L +    SL E         N      LC  G S +    + +L     Q+  L++   
Sbjct: 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303

Query: 116 SQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
              T+     L + C  L  ++      I D  L  LA  C +L++L
Sbjct: 304 LLETEDHCT-LIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRL 347

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 87.7 bits (217), Expect = 5e-21
 Identities = 26/155 (16%), Positives = 44/155 (28%), Gaps = 16/155 (10%)

Query: 7   VLSLAENCPNLYYLCLS-GCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARG 65
           V SL   C  L           LTD  L  + Q    +  + +                G
Sbjct: 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-------------G 474

Query: 66  LLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS-QFTDTGFQ 124
             D  ++  +  CPNL  L + GC   ++ ++     +   L  L V       T     
Sbjct: 475 ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533

Query: 125 ALARNCRLLAKMDLEECVLITDATLIHLALGCPRL 159
            +AR    +  +       +     I        +
Sbjct: 534 QMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHI 568

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 82.7 bits (204), Expect = 3e-19
 Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 18/161 (11%)

Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ-RCHQLHTLEVASCSQFTDTGFQALARG 65
           V  ++ N   L  +       ++D  L  LA+ R   L TL++  CS FT  G  ++   
Sbjct: 104 VTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVT- 161

Query: 66  LLDSAVLSLAENCPNLYYLCLSGCS--QLTDASLIVLAQRCHQLHTLEVA--SCSQFTDT 121
                      +C  +  L +   S  +     L  LAQ    L  L       ++ +  
Sbjct: 162 -----------HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPK 210

Query: 122 GFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
             + +ARNCR L  + + +  ++        A         
Sbjct: 211 DLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 79.2 bits (195), Expect = 4e-18
 Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 33/173 (19%)

Query: 13  NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVL 72
              +L  L L  CS  T   L+ +   C ++ TL +   S                  + 
Sbjct: 136 RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD----------GKWLH 185

Query: 73  SLAENCPNLYYLCLS--GCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNC 130
            LA++  +L  L       ++++   L  +A+ C  L +++V         GF   A N 
Sbjct: 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANL 245

Query: 131 RLLA---------------------KMDLEECVLITDATLIHLALGCPRLEKL 162
                                    K+       +    +  L     ++ KL
Sbjct: 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 76.1 bits (187), Expect = 6e-17
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 8/147 (5%)

Query: 20  LCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL-ARGLLDSAVLSLAENC 78
           + ++ C   T   L   ++R   L +L++    +            G +   V  ++ N 
Sbjct: 55  VTMALCYTATPDRL---SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNL 111

Query: 79  PNLYYLCLSGCSQLTDASLIVLAQ-RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMD 137
             L  +       ++D  L  LA+ R   L TL++  CS FT  G  ++  +CR +  + 
Sbjct: 112 RQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL 170

Query: 138 LEECVLIT--DATLIHLALGCPRLEKL 162
           +EE          L  LA     LE L
Sbjct: 171 MEESSFSEKDGKWLHELAQHNTSLEVL 197

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.5 bits (149), Expect = 7e-12
 Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 17/118 (14%)

Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
           +  + +  PN+ ++ L      +D  L+  ++ C  L  LE+  C  F++    A    L
Sbjct: 455 LSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKL 512

Query: 67  L---------------DSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHT 109
                              ++ +A    N+  +      ++     I   +    +  
Sbjct: 513 PSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILA 570

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 6   TVLSLAENCPNLYYLCLSGCS-QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
            + +     P+L YL + G    +T   L+ +A+    +  +      +    G      
Sbjct: 504 AIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREME 563

Query: 65  GL 66
             
Sbjct: 564 HP 565

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =   99 bits (249), Expect = 2e-25
 Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 8/156 (5%)

Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
           ++S++  CP L  + L  C Q+T+A+LI +A+    +    +             L    
Sbjct: 364 LVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY---LTLEP 419

Query: 67  LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
           LD    ++ E+C +L  L LSG   LTD     +     ++  L VA     +D G   +
Sbjct: 420 LDIGFGAIVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHV 476

Query: 127 ARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
              C  L K+++ +C     A L+  A     +  L
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKA-LLANASKLETMRSL 511

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 98.0 bits (244), Expect = 1e-24
 Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
           ++ L   CP L  L +     + DA L VLA  C  L  L V     F           L
Sbjct: 306 LVKLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPN----VAL 359

Query: 67  LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS---------Q 117
            +  ++S++  CP L  + L  C Q+T+A+LI +A+    +    +             +
Sbjct: 360 TEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418

Query: 118 FTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
             D GF A+  +C+ L ++ L     +TD    ++     ++E L
Sbjct: 419 PLDIGFGAIVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEML 461

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 89.6 bits (222), Expect = 1e-21
 Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 18/163 (11%)

Query: 3   IFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 62
           ++  + +++ +   L  + L     +TD  L ++A+       L ++SC  F+  G  A+
Sbjct: 93  VYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI 151

Query: 63  ARGLLDSAVLSLAENCPNLYYLCLSGC--SQLTDASLIVLAQRCHQLHTLEVASC-SQFT 119
           A              C NL  L L       ++   L         L +L ++   S+ +
Sbjct: 152 AA------------TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS 199

Query: 120 DTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
            +  + L   C  L  + L   V +    L  L    P+LE+L
Sbjct: 200 FSALERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQLEEL 240

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 88.4 bits (219), Expect = 3e-21
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 29/181 (16%)

Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
           +  L   CPNL  L L+    L    L  L QR  QL  L     +        +     
Sbjct: 203 LERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260

Query: 67  L----------------DSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 110
           L                 + + ++   C  L  L LS    +    L+ L  +C +L  L
Sbjct: 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQRL 319

Query: 111 EVASCSQFTDTGFQALARNCRLLAKMDL--------EECVLITDATLIHLALGCPRLEKL 162
            V       D G + LA  C+ L ++ +        E  V +T+  L+ +++GCP+LE +
Sbjct: 320 WV--LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377

Query: 163 I 163
           +
Sbjct: 378 L 378

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 83.8 bits (207), Expect = 1e-19
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 4/141 (2%)

Query: 25  CSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALA-RGLLDSAVLSLAENCPNLYY 83
                  S   + +R  ++ ++E+     F D         G +   + +++ +   L  
Sbjct: 50  IGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEE 109

Query: 84  LCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVL 143
           + L     +TD  L ++A+       L ++SC  F+  G  A+A  CR L ++DL E  +
Sbjct: 110 IRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDV 168

Query: 144 --ITDATLIHLALGCPRLEKL 162
             ++   L H       L  L
Sbjct: 169 DDVSGHWLSHFPDTYTSLVSL 189

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 83.8 bits (207), Expect = 1e-19
 Identities = 38/173 (21%), Positives = 61/173 (35%), Gaps = 22/173 (12%)

Query: 7   VLSLAENCPNLYYLCLSGC-SQLTDASLIVLAQRCHQLHTLEVASCSQFTD--------- 56
           +    +   +L  L +S   S+++ ++L  L  RC  L +L++                 
Sbjct: 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP 235

Query: 57  -------TGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHT 109
                   G+ A  R  + S +      C  L   CLSG      A L  +   C +L T
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKEL--RCLSGFWDAVPAYLPAVYSVCSRLTT 293

Query: 110 LEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
           L ++            L   C  L ++ +     I DA L  LA  C  L +L
Sbjct: 294 LNLSYA-TVQSYDLVKLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLREL 343

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 83.4 bits (206), Expect = 1e-19
 Identities = 38/178 (21%), Positives = 53/178 (29%), Gaps = 25/178 (14%)

Query: 6   TVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC--SQFTDTGFQALA 63
            +  +A++  N   L LS C   +   L  +A  C  L  L++        +        
Sbjct: 121 CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180

Query: 64  RGLL---------------DSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLH 108
                               SA+  L   CPNL  L L+    L    L  L QR  QL 
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQLE 238

Query: 109 TLEVASCSQFTD----TGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
            L     +        +G       C+ L    L        A L  +   C RL  L
Sbjct: 239 ELGTGGYTAEVRPDVYSGLSVALSGCKEL--RCLSGFWDAVPAYLPAVYSVCSRLTTL 294

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 73.4 bits (180), Expect = 5e-16
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 17/127 (13%)

Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
             ++ E+C +L  L LSG   LTD     +     ++  L VA               G 
Sbjct: 424 FGAIVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFA-------------GD 468

Query: 67  LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
            D  +  +   C +L  L +  C    D +L+  A +   + +L ++SCS  +    + L
Sbjct: 469 SDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCS-VSFGACKLL 526

Query: 127 ARNCRLL 133
            +    L
Sbjct: 527 GQKMPKL 533

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 65.6 bits (160), Expect = 3e-14
 Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 16/104 (15%)

Query: 1   MDIFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCH---QLHTLEVASCSQFTDT 57
             I        E    +  + L  C  + D  L  L+Q  +    +  +E+ SC   TD 
Sbjct: 71  SCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130

Query: 58  GFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLA 101
           G  AL                 NL YL LS    + +   IV A
Sbjct: 131 GIIALHH-------------FRNLKYLFLSDLPGVKEKEKIVQA 161

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 65.2 bits (159), Expect = 4e-14
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 67  LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCH---QLHTLEVASCSQFTDTGF 123
           + S      E    +  + L  C  + D  L  L+Q  +    +  +E+ SC   TD G 
Sbjct: 73  IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132

Query: 124 QALARNCRLLAKMDLEECVLITDATLIHLAL--GCPRLE 160
            AL    R L  + L +   + +   I  A     P LE
Sbjct: 133 IALHH-FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 15/149 (10%)

Query: 15  PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEV--ASCSQFTDTGFQALARGLLDSAVL 72
           PNL  L +            +L      L  L +         D                
Sbjct: 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS----- 247

Query: 73  SLAENCPNLYYLCLSGCSQLTD-ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCR 131
              +  PNL +L +    +      + + +    QL T+++ S    TD G + L  +  
Sbjct: 248 --KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI-SAGVLTDEGARLLLDHVD 304

Query: 132 LLAKM---DLEECVLITDATLIHLALGCP 157
            +  +   +++    ++D     L    P
Sbjct: 305 KIKHLKFINMKYN-YLSDEMKKELQKSLP 332

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 12/101 (11%)

Query: 5   ITVLSLAENCPNLYYLCLSGCSQLTD-ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALA 63
              L   +  PNL +L +    +      + + +    QL T+++ S    TD G + L 
Sbjct: 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI-SAGVLTDEGARLLL 300

Query: 64  RGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRC 104
             +         +   +L ++ +     L+D     L +  
Sbjct: 301 DHV---------DKIKHLKFINMKYN-YLSDEMKKELQKSL 331

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 37/169 (21%), Positives = 58/169 (34%), Gaps = 26/169 (15%)

Query: 7   VLSLAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTDTGFQALA 63
              L         + L  C  LT+A    ++   +    L  L +   ++  D G   + 
Sbjct: 20  WAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNL-RSNELGDVGVHCVL 77

Query: 64  RGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTD 120
           +G        L      +  L L  C  LT A   VL+   +    L  L + S +   D
Sbjct: 78  QG--------LQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHL-SDNLLGD 127

Query: 121 TGFQALA----RNCRLLAKMDLEECVLITDATLIHLAL---GCPRLEKL 162
            G Q L          L K+ LE C  ++ A+   LA      P  ++L
Sbjct: 128 AGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKEL 175

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 23/155 (14%)

Query: 9   SLAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTDTGFQALARG 65
           +L E    L  L +  C   T A     +    +   L  L++ S ++  D G + L +G
Sbjct: 307 TLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQI-SNNRLEDAGVRELCQG 364

Query: 66  LLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTDTG 122
                   L +    L  L L+ C  ++D+S   LA      H L  L++ S +   D G
Sbjct: 365 --------LGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDL-SNNCLGDAG 414

Query: 123 FQALA----RNCRLLAKMDLEECVLITDATLIHLA 153
              L     +   LL ++ L +    ++     L 
Sbjct: 415 ILQLVESVRQPGCLLEQLVLYDI-YWSEEMEDRLQ 448

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 43/167 (25%), Positives = 57/167 (34%), Gaps = 28/167 (16%)

Query: 10  LAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTDTGFQALARGL 66
           L      +  L L  C  LT A   VL+   +    L  L + S +   D G Q L  GL
Sbjct: 80  LQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHL-SDNLLGDAGLQLLCEGL 137

Query: 67  LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQLHTLEVASCSQFTDTGF 123
           LD            L  L L  C  L+ AS   LA           L V S +   + G 
Sbjct: 138 LD--------PQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTV-SNNDINEAGV 187

Query: 124 QALAR-----NCRLLAKMDLEECVLITDATLIHLALG---CPRLEKL 162
           + L +      C+L   + LE C  +T      L         L +L
Sbjct: 188 RVLCQGLKDSPCQLE-ALKLESC-GVTSDNCRDLCGIVASKASLREL 232

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 32/167 (19%), Positives = 52/167 (31%), Gaps = 26/167 (15%)

Query: 9   SLAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTDTGFQALARG 65
            L ++   L  L L  C  +T  +   L         L  L +   ++  D G   L  G
Sbjct: 193 GLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELAL-GSNKLGDVGMAELCPG 250

Query: 66  LLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQLHTLEVASCSQFTDTG 122
           LL             L  L +  C  +T      L +       L  L + + ++  D G
Sbjct: 251 LLHP--------SSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSL-AGNELGDEG 300

Query: 123 FQALAR----NCRLLAKMDLEECVLITDATLIHLALG---CPRLEKL 162
            + L          L  + ++ C   T A   H +        L +L
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLEL 346

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 12/112 (10%)

Query: 57  TGFQALA-RGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 115
           +G   +A    L   V    +    +++L L  C+   +  L +L +  +Q+     +  
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDF--KIFWLNLKNCNS-PETVLEMLQKLLYQIDPNWTSRS 217

Query: 116 SQFTDTGF---QALARNCRLLAKMDLEECVLITD-----ATLIHLALGCPRL 159
              ++         A   RLL     E C+L+              L C  L
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 22/155 (14%)

Query: 10  LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEV--ASCSQFTDTGFQALARGLL 67
           +  N P+L  + L+    +   +L   A+       ++      ++  D    ALA    
Sbjct: 31  IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM-- 88

Query: 68  DSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEV----ASCSQFTDTGF 123
                 L  N   L  L +     ++ + ++ L +      +L             +   
Sbjct: 89  ------LKVNN-TLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140

Query: 124 QALAR----NCRLLAKMDLEECVLITDATLIHLAL 154
             +A     N  LL K                 A+
Sbjct: 141 MEIANMLEKNTTLL-KFGYHFT-QQGPRLRASNAM 173

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 26/140 (18%)

Query: 12  ENCPNLYYLCLSGCSQLTDASLIVLA----QRCHQLHTLEVASCSQFTDTGFQALARGLL 67
           ++   L+ + +     +    +  L       C +L  L++     FT  G  ALA  L 
Sbjct: 184 QSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIAL- 240

Query: 68  DSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ-----RCHQLHTLEVASCSQFTDTG 122
                   ++ PNL  L L+ C  L+      +           L TL +    +     
Sbjct: 241 --------KSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDA 290

Query: 123 FQALAR----NCRLLAKMDL 138
            + L          L  ++L
Sbjct: 291 VRTLKTVIDEKMPDLLFLEL 310

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 39/177 (22%)

Query: 12  ENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCS-----QFTDTGFQALA 63
               ++  + LSG   +   +   L+        L   E +               + L 
Sbjct: 29  LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87

Query: 64  RGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTD 120
           + LL          CP L+ + LS        +   L     +   L  L + +      
Sbjct: 88  QALL---------KCPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGP 136

Query: 121 TGFQALAR------------NCRLLAKMDLEECVLITDATLIHLALG---CPRLEKL 162
                +AR            N   L  +       + + ++   A        L  +
Sbjct: 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTV 192

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 28/190 (14%), Positives = 55/190 (28%), Gaps = 43/190 (22%)

Query: 10  LAENCPNLYYLCLSGCSQLTDASLIVLAQ----RCHQLHTLEVASCSQFTDTGFQALARG 65
           LA    N+  L LSG   L+  S   L +        +  L++     F+        + 
Sbjct: 75  LAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQA 132

Query: 66  LL-----------------DSAVLSLAE-----NCPNLYYLCLSGCSQLTDASLIVLA-- 101
                                +   L +        N+  L L G   L   +   LA  
Sbjct: 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA-NVNSLNLRGN-NLASKNCAELAKF 190

Query: 102 --QRCHQLHTLEVASCSQFTDTGFQALAR----NCRLLAKMDLEECVLITDATLIHLALG 155
                  + +L++++        +  LA         +  ++L     +   +L +L L 
Sbjct: 191 LASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLL 248

Query: 156 ---CPRLEKL 162
                 L+ +
Sbjct: 249 KDSLKHLQTV 258

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.73
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.73
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.73
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.7
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.69
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.59
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.52
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.52
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.48
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.45
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.44
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.4
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.3
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.29
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.27
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.27
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	99.22
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.18
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.17
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.1
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	99.02
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.94
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.87
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.86
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.84
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.81
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.77
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.76
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.72
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.71
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.67
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.67
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.64
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.64
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.63
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.62
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.62
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.62
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.61
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.6
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.59
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.59
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.59
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.58
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.58
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.56
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.55
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.55
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.54
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.54
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.53
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.53
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.53
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.53
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.52
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.52
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.52
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.51
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.5
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.5
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.5
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.49
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.48
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.48
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.46
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.44
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.43
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.43
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.41
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.41
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.41
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.4
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.4
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.4
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.39
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.39
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.38
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.33
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.33
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.31
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.3
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.29
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.28
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.27
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.18
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.03
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.01
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.98
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.94
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.92
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.87
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.86
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.65
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.62
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.59
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.34
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.3
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.96
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.35
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	95.87
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.09
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.87
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	92.78
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.05
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.08
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	91.02
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	86.93
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	80.68

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.73  E-value=2.2e-16  Score=123.73  Aligned_cols=153  Identities=25%  Similarity=0.374  Sum_probs=111.6

Q ss_pred             HHHHhcCCCCcEEeecC----------CCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC-----------
Q psy9589           8 LSLAENCPNLYYLCLSG----------CSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL-----------   66 (163)
Q Consensus         8 ~~~~~~~~~L~~L~l~~----------~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-----------   66 (163)
                      ..+...+++|++|++++          |..+++..+..+...||+|++|+++ |..+++.++..++..+           
T Consensus       335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~  413 (592)
T 3ogk_B          335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLL  413 (592)
T ss_dssp             HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred             HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeec
Confidence            34455677788888874          6667777777777778888888883 4477777777766532           


Q ss_pred             ----------CHHHHHHHHhcCCCCceEecCCCC-CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCE
Q psy9589          67 ----------LDSAVLSLAENCPNLYYLCLSGCS-QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAK  135 (163)
Q Consensus        67 ----------~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~  135 (163)
                                .+.++..+...+++|++|++++|. .+++..+..++..+++|+.|++++| .+++.++..+..++++|++
T Consensus       414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~  492 (592)
T 3ogk_B          414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQK  492 (592)
T ss_dssp             SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCE
T ss_pred             CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCe
Confidence                      124566667778888888887654 3777788888777888888888875 5887777777777888888


Q ss_pred             EeccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589         136 MDLEECVLITDATLIHLALGCPRLEKLI  163 (163)
Q Consensus       136 L~l~~~~~l~~~~~~~l~~~~~~L~~L~  163 (163)
                      |++++| .+++.++..+...+++|+.|+
T Consensus       493 L~l~~n-~l~~~~~~~~~~~l~~L~~L~  519 (592)
T 3ogk_B          493 LEMRGC-CFSERAIAAAVTKLPSLRYLW  519 (592)
T ss_dssp             EEEESC-CCBHHHHHHHHHHCSSCCEEE
T ss_pred             eeccCC-CCcHHHHHHHHHhcCccCeeE
Confidence            888888 478777777777788887663

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.73  E-value=7.3e-17  Score=118.47  Aligned_cols=145  Identities=20%  Similarity=0.356  Sum_probs=82.6

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC-------------CHHHHHHHHhcCCCC
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL-------------LDSAVLSLAENCPNL   81 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-------------~~~~~~~~~~~~~~L   81 (163)
                      ++|++|++++|. +++..+..+...+++|++|++++| .+++.....++...             ++.++..+...+++|
T Consensus        93 ~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           93 FRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             BCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            445555554433 344434444444555555555544 34433333332210             122233334467777


Q ss_pred             ceEecCCCCCCCHHHHHHHHHhCC-CCCEEEecCCC-CCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCC
Q psy9589          82 YYLCLSGCSQLTDASLIVLAQRCH-QLHTLEVASCS-QFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRL  159 (163)
Q Consensus        82 ~~L~l~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L  159 (163)
                      ++|++++|..+++.++......+| +|++|++++|. .+++.++.....++++|++|++++|..+++..+..+ ..+++|
T Consensus       171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L  249 (336)
T 2ast_B          171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYL  249 (336)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTC
T ss_pred             CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCC
Confidence            777777765677766666666777 77777777765 577666666666677777777777744666555544 356777


Q ss_pred             ccC
Q psy9589         160 EKL  162 (163)
Q Consensus       160 ~~L  162 (163)
                      ++|
T Consensus       250 ~~L  252 (336)
T 2ast_B          250 QHL  252 (336)
T ss_dssp             CEE
T ss_pred             CEe
Confidence            665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.73  E-value=2.6e-16  Score=123.36  Aligned_cols=146  Identities=26%  Similarity=0.444  Sum_probs=72.4

Q ss_pred             HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEe--------cCCCCCChHHHHHHHhcC-------------CHH
Q psy9589          11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEV--------ASCSQFTDTGFQALARGL-------------LDS   69 (163)
Q Consensus        11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l--------~~~~~~~~~~~~~l~~~~-------------~~~   69 (163)
                      ...+++|++|++++|  +++..+..+...+++|++|++        .+|..+++.++..++..+             ++.
T Consensus       310 ~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~  387 (594)
T 2p1m_B          310 LCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA  387 (594)
T ss_dssp             HTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHH
T ss_pred             HhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHH
Confidence            345555555555554  345555555555666666666        233455555555554432             344


Q ss_pred             HHHHHHhcCCCCceEecC-----CCCCCC----HHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccC
Q psy9589          70 AVLSLAENCPNLYYLCLS-----GCSQLT----DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEE  140 (163)
Q Consensus        70 ~~~~~~~~~~~L~~L~l~-----~~~~~~----~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~  140 (163)
                      .+..+...+|+|++|+++     +|..++    +.++..+...|++|+.|++++  .+++.++..+.+.+++|+.|++++
T Consensus       388 ~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~  465 (594)
T 2p1m_B          388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAF  465 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccC
Confidence            444455455566666655     344444    445554444555555555533  344444444444444444444444


Q ss_pred             CCCCChHHHHHHHhCCCCCcc
Q psy9589         141 CVLITDATLIHLALGCPRLEK  161 (163)
Q Consensus       141 ~~~l~~~~~~~l~~~~~~L~~  161 (163)
                      | .+++.++..+...|++|+.
T Consensus       466 ~-~i~~~~~~~l~~~~~~L~~  485 (594)
T 2p1m_B          466 A-GDSDLGMHHVLSGCDSLRK  485 (594)
T ss_dssp             C-CSSHHHHHHHHHHCTTCCE
T ss_pred             C-CCcHHHHHHHHhcCCCcCE
Confidence            4 3444444444444444443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.73  E-value=6.7e-18  Score=113.18  Aligned_cols=104  Identities=21%  Similarity=0.358  Sum_probs=75.2

Q ss_pred             cCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHh---CCCCCEEEecCCCCC
Q psy9589          42 QLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQR---CHQLHTLEVASCSQF  118 (163)
Q Consensus        42 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~i  118 (163)
                      +|++|++++|. +++.|+..+.             .|++|++|+|++|..++|.++..++..   +++|++|+|++|+.|
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~-------------~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I  127 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHME-------------GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV  127 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGT-------------TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred             eEeEEeCcCCC-ccHHHHHHhc-------------CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence            57888888874 7777766552             577888888888877888888777742   567888888888778


Q ss_pred             CHHHHHHHHHcCCCCCEEeccCCCCCChHH--HHHHHhCCCCCc
Q psy9589         119 TDTGFQALARNCRLLAKMDLEECVLITDAT--LIHLALGCPRLE  160 (163)
Q Consensus       119 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~--~~~l~~~~~~L~  160 (163)
                      |+.++..+. ++++|++|++++|+.|++.+  +..+.+.+|+++
T Consensus       128 TD~Gl~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          128 TDKGIIALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             CHHHHHHGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             CHHHHHHHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            888877764 47888888888887787754  445556677654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.73  E-value=7.1e-18  Score=113.05  Aligned_cols=109  Identities=12%  Similarity=0.195  Sum_probs=93.1

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTD   94 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   94 (163)
                      .+|++|++++|. ++|.++..+ ..|++|++|++++|..+++.|+..++..         ...+++|++|++++|..++|
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~---------~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQL---------ENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTC---------HHHHHHCCEEEEESCTTCCH
T ss_pred             ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhc---------ccccCCCCEEEcCCCCcCCH
Confidence            369999999987 999999888 5799999999999999999998888752         00246899999999999999


Q ss_pred             HHHHHHHHhCCCCCEEEecCCCCCCHHH--HHHHHHcCCCCCE
Q psy9589          95 ASLIVLAQRCHQLHTLEVASCSQFTDTG--FQALARNCRLLAK  135 (163)
Q Consensus        95 ~~~~~l~~~~~~L~~L~l~~~~~i~~~~--~~~l~~~~~~L~~  135 (163)
                      .++..++ .|++|++|++++|+.+++.+  ...+.+..|+++.
T Consensus       130 ~Gl~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          130 KGIIALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             HHHHHGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             HHHHHHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence            9999998 79999999999999999876  3445566888763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.72  E-value=1.2e-16  Score=117.34  Aligned_cols=151  Identities=26%  Similarity=0.428  Sum_probs=106.1

Q ss_pred             HHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC--------------CHHHHHHH
Q psy9589           9 SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL--------------LDSAVLSL   74 (163)
Q Consensus         9 ~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--------------~~~~~~~~   74 (163)
                      .....+++|++|++++|. +++.....+.. +++|++|++++|..+++.++......+              +..++..+
T Consensus       112 ~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  189 (336)
T 2ast_B          112 GILSQCSKLQNLSLEGLR-LSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA  189 (336)
T ss_dssp             HHHTTBCCCSEEECTTCB-CCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             HHHhhCCCCCEEeCcCcc-cCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence            344556666666666653 45544444433 666666666666555555444433322              33445556


Q ss_pred             HhcCC-CCceEecCCCC-CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHH
Q psy9589          75 AENCP-NLYYLCLSGCS-QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHL  152 (163)
Q Consensus        75 ~~~~~-~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  152 (163)
                      ...+| +|++|+++++. .+++..+......+++|++|++++|..+++..+..+ ..+++|++|++++|..+++.++..+
T Consensus       190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l  268 (336)
T 2ast_B          190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLEL  268 (336)
T ss_dssp             HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred             HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHH
Confidence            66899 99999999976 688888888877899999999999876887776655 4579999999999987888766454


Q ss_pred             HhCCCCCccCC
Q psy9589         153 ALGCPRLEKLI  163 (163)
Q Consensus       153 ~~~~~~L~~L~  163 (163)
                       ..+++|+.|+
T Consensus       269 -~~~~~L~~L~  278 (336)
T 2ast_B          269 -GEIPTLKTLQ  278 (336)
T ss_dssp             -GGCTTCCEEE
T ss_pred             -hcCCCCCEEe
Confidence             4689998764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.70  E-value=1.4e-15  Score=119.31  Aligned_cols=152  Identities=28%  Similarity=0.383  Sum_probs=124.6

Q ss_pred             HHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecC----------CCCCChHHHHHHHhcC------------
Q psy9589           9 SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVAS----------CSQFTDTGFQALARGL------------   66 (163)
Q Consensus         9 ~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~----------~~~~~~~~~~~l~~~~------------   66 (163)
                      .+...+++|++|++++  .+.+..+..+...|++|++|++++          |..+++.++..+...+            
T Consensus       312 ~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  389 (592)
T 3ogk_B          312 TLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD  389 (592)
T ss_dssp             HHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred             HHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence            4456788888888874  457788888888899999999994          7889998888877654            


Q ss_pred             -CHHHHHHHHhcCCCCceEecCC---CCCCCH----HHHHHHHHhCCCCCEEEecCCC-CCCHHHHHHHHHcCCCCCEEe
Q psy9589          67 -LDSAVLSLAENCPNLYYLCLSG---CSQLTD----ASLIVLAQRCHQLHTLEVASCS-QFTDTGFQALARNCRLLAKMD  137 (163)
Q Consensus        67 -~~~~~~~~~~~~~~L~~L~l~~---~~~~~~----~~~~~l~~~~~~L~~L~l~~~~-~i~~~~~~~l~~~~~~L~~L~  137 (163)
                       ++..+..+...+++|++|++++   ++.+++    .++..+..+|++|++|+++.|. .+++.++..+.+.+++|++|+
T Consensus       390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~  469 (592)
T 3ogk_B          390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML  469 (592)
T ss_dssp             CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred             ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence             6777788887899999999973   455664    5777777789999999997755 488888888888899999999


Q ss_pred             ccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589         138 LEECVLITDATLIHLALGCPRLEKLI  163 (163)
Q Consensus       138 l~~~~~l~~~~~~~l~~~~~~L~~L~  163 (163)
                      +++| .+++.++..+...|++|++|+
T Consensus       470 L~~n-~l~~~~~~~~~~~~~~L~~L~  494 (592)
T 3ogk_B          470 LGYV-GESDEGLMEFSRGCPNLQKLE  494 (592)
T ss_dssp             ECSC-CSSHHHHHHHHTCCTTCCEEE
T ss_pred             ccCC-CCCHHHHHHHHhcCcccCeee
Confidence            9998 799988888888999998774

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.69  E-value=1.6e-15  Score=118.91  Aligned_cols=89  Identities=25%  Similarity=0.404  Sum_probs=41.4

Q ss_pred             HHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHH
Q psy9589          69 SAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDAT  148 (163)
Q Consensus        69 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~  148 (163)
                      .++..+.+.+++|++|++++  .+++.++..++..+++|+.|++++| .+++.++..++.++++|+.|++++| .+++.+
T Consensus       422 ~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n-~~~~~~  497 (594)
T 2p1m_B          422 IGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKA  497 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESC-SCCHHH
T ss_pred             hHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCC-CCcHHH
Confidence            33444444455555555533  3444444444444455555555443 2444444444444455555555554 334444


Q ss_pred             HHHHHhCCCCCcc
Q psy9589         149 LIHLALGCPRLEK  161 (163)
Q Consensus       149 ~~~l~~~~~~L~~  161 (163)
                      +..+...+++|+.
T Consensus       498 ~~~~~~~l~~L~~  510 (594)
T 2p1m_B          498 LLANASKLETMRS  510 (594)
T ss_dssp             HHHTGGGGGGSSE
T ss_pred             HHHHHHhCCCCCE
Confidence            4444444444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.59  E-value=2.5e-13  Score=92.16  Aligned_cols=134  Identities=16%  Similarity=0.136  Sum_probs=108.0

Q ss_pred             hhHHhHHHHHhcCCCCcEEeecCCCCCChHHHHHHHH---hCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcC
Q psy9589           2 DIFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENC   78 (163)
Q Consensus         2 d~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   78 (163)
                      |+-+.+.......++|++|+|++|..+++.+...+..   ..++|++|++++| .+++.|+..++.         .....
T Consensus        23 ~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~---------~L~~n   92 (185)
T 1io0_A           23 DVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAE---------MLKVN   92 (185)
T ss_dssp             CHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHH---------HHHHC
T ss_pred             HHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHH---------HHHhC
Confidence            3445567778889999999999974689988887665   4688999999998 799998887765         23467


Q ss_pred             CCCceEecCCCCCCCHHHHHHHHHh---CCCCCEEEe--cCCCCCCHHHHHHHHH---cCCCCCEEeccCCCCCChHH
Q psy9589          79 PNLYYLCLSGCSQLTDASLIVLAQR---CHQLHTLEV--ASCSQFTDTGFQALAR---NCRLLAKMDLEECVLITDAT  148 (163)
Q Consensus        79 ~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l--~~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~  148 (163)
                      +.|++|+|+++ .+++.+...++..   .+.|++|++  ++ +.+++++...+++   ..++|++|++++| .+++.+
T Consensus        93 ~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~  167 (185)
T 1io0_A           93 NTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL  167 (185)
T ss_dssp             SSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred             CCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence            89999999995 7999998888754   578999999  65 5799988666544   4689999999998 787764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.52  E-value=2.7e-13  Score=101.35  Aligned_cols=134  Identities=25%  Similarity=0.173  Sum_probs=70.6

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhc-----C------------CHHHHHHH---
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARG-----L------------LDSAVLSL---   74 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-----~------------~~~~~~~~---   74 (163)
                      ++|++|+|++|. +++..+..+...+++|++|++++| .+++.+...++..     +            ++.++..+   
T Consensus       101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  178 (372)
T 3un9_A          101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG  178 (372)
T ss_dssp             SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence            577777777654 566666666666667777777776 6666666655431     0            22222222   


Q ss_pred             HhcCCCCceEecCCCCCCCHHHHHHHHH---hCCCCCEEEecCCCCCCHHHHHHHHH---cCCCCCEEeccCCCCCChHH
Q psy9589          75 AENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQLHTLEVASCSQFTDTGFQALAR---NCRLLAKMDLEECVLITDAT  148 (163)
Q Consensus        75 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~  148 (163)
                      ...+++|++|+++++ .+++.++..++.   .+++|+.|++++| .+++.+...++.   ..++|++|++++| .+++.+
T Consensus       179 L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g  255 (372)
T 3un9_A          179 LAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSSEG  255 (372)
T ss_dssp             HHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHH
T ss_pred             HhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHH
Confidence            234455555555553 355554444332   2345555555553 455544443332   2455555555555 555555


Q ss_pred             HHHHH
Q psy9589         149 LIHLA  153 (163)
Q Consensus       149 ~~~l~  153 (163)
                      +..+.
T Consensus       256 ~~~L~  260 (372)
T 3un9_A          256 RQVLR  260 (372)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.52  E-value=8.1e-13  Score=98.86  Aligned_cols=46  Identities=20%  Similarity=0.233  Sum_probs=22.3

Q ss_pred             hcCCCCcEEeecCCCCCChHH---HHHHHHhCCcCCEEEecCCCCCChHHH
Q psy9589          12 ENCPNLYYLCLSGCSQLTDAS---LIVLAQRCHQLHTLEVASCSQFTDTGF   59 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~---l~~i~~~~~~L~~L~l~~~~~~~~~~~   59 (163)
                      ..+++|++|++++|. +++..   +......+++|++|++++| .++..+.
T Consensus        91 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~  139 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAG  139 (386)
T ss_dssp             TTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHH
T ss_pred             hhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHH
Confidence            455666666666644 23321   2222344566666666555 3443333

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.48  E-value=3.5e-12  Score=95.38  Aligned_cols=49  Identities=20%  Similarity=0.288  Sum_probs=25.6

Q ss_pred             HhcCCCCcEEeecCCC--CCC---hHHHHHHH---HhCCcCCEEEecCCCCCChHHHH
Q psy9589          11 AENCPNLYYLCLSGCS--QLT---DASLIVLA---QRCHQLHTLEVASCSQFTDTGFQ   60 (163)
Q Consensus        11 ~~~~~~L~~L~l~~~~--~~~---~~~l~~i~---~~~~~L~~L~l~~~~~~~~~~~~   60 (163)
                      ...+++|++|++++|.  .++   +..+..+.   ..+++|++|++++| .++..++.
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~  112 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQE  112 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTTTHH
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHHHHH
Confidence            3456677777776652  122   22333322   34666777777765 45554433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.45  E-value=3e-12  Score=97.55  Aligned_cols=141  Identities=25%  Similarity=0.270  Sum_probs=101.1

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHH---HHhCCcCCEEEecCCCCCChHHHHHHHhcC-----------------C---H
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVL---AQRCHQLHTLEVASCSQFTDTGFQALARGL-----------------L---D   68 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i---~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-----------------~---~   68 (163)
                      ..+++|++|++++| .+++.....+   ...+++|++|++++| .+++.+...++...                 +   .
T Consensus       253 ~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  330 (461)
T 1z7x_W          253 HPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC  330 (461)
T ss_dssp             STTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             cCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH
Confidence            35789999999886 4677664443   345889999999887 67777776665431                 1   2


Q ss_pred             HHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHh----CCCCCEEEecCCCCCCHHHHHHHH---HcCCCCCEEeccCC
Q psy9589          69 SAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQR----CHQLHTLEVASCSQFTDTGFQALA---RNCRLLAKMDLEEC  141 (163)
Q Consensus        69 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~L~~L~l~~~  141 (163)
                      ..+......+++|++|+++++ .+++.++..++..    +++|++|++++| .+++.++..++   ..+++|++|++++|
T Consensus       331 ~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          331 SHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN  408 (461)
T ss_dssp             HHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             HHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence            234445567889999999885 6888777776643    578999999885 68876655543   34789999999998


Q ss_pred             CCCChHHHHHHHhCCC
Q psy9589         142 VLITDATLIHLALGCP  157 (163)
Q Consensus       142 ~~l~~~~~~~l~~~~~  157 (163)
                       .+++.++..+.+.++
T Consensus       409 -~i~~~~~~~l~~~l~  423 (461)
T 1z7x_W          409 -CLGDAGILQLVESVR  423 (461)
T ss_dssp             -SCCHHHHHHHHHHHT
T ss_pred             -CCCHHHHHHHHHHhc
Confidence             888887777665443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.44  E-value=2.2e-12  Score=96.40  Aligned_cols=70  Identities=16%  Similarity=0.099  Sum_probs=49.8

Q ss_pred             HhcCCCCceEecCCCCCCCHHHHHHHHH---hCCCCCEEEecCCCCCCHHHHHHHHHcC-CC---CCEEe--ccCCCCCC
Q psy9589          75 AENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQLHTLEVASCSQFTDTGFQALARNC-RL---LAKMD--LEECVLIT  145 (163)
Q Consensus        75 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~---L~~L~--l~~~~~l~  145 (163)
                      ....++|++|+++++ .+++.+...++.   .+++|++|++++| .+++.+...+.+.. +.   |+.+.  +..+ .++
T Consensus       207 L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~-~~~  283 (372)
T 3un9_A          207 LDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGT-AVS  283 (372)
T ss_dssp             GGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC-----CH
T ss_pred             HhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCC-ccC
Confidence            356789999999995 699988777654   5799999999995 69999988876532 22   77776  6664 555


Q ss_pred             hH
Q psy9589         146 DA  147 (163)
Q Consensus       146 ~~  147 (163)
                      ++
T Consensus       284 ~~  285 (372)
T 3un9_A          284 EY  285 (372)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.44  E-value=2e-12  Score=98.50  Aligned_cols=139  Identities=24%  Similarity=0.317  Sum_probs=90.7

Q ss_pred             HHHHhcCCCCcEEeecCCCCCChHHHHH---HHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCC----C
Q psy9589           8 LSLAENCPNLYYLCLSGCSQLTDASLIV---LAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCP----N   80 (163)
Q Consensus         8 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~---i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~   80 (163)
                      ..+...+++|++|++++|. +++.....   ....+++|++|++++| .+++.++..+..            .++    +
T Consensus        21 ~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~------------~l~~~~~~   86 (461)
T 1z7x_W           21 AELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQ------------GLQTPSCK   86 (461)
T ss_dssp             HHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHH------------TTCSTTCC
T ss_pred             HHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHH------------HHhhCCCc
Confidence            3445567777777777755 55554333   3445677777777775 455554444433            444    6


Q ss_pred             CceEecCCCCCCCHHHHHHH---HHhCCCCCEEEecCCCCCCHHHHHHHHHc----CCCCCEEeccCCCCCChHH---HH
Q psy9589          81 LYYLCLSGCSQLTDASLIVL---AQRCHQLHTLEVASCSQFTDTGFQALARN----CRLLAKMDLEECVLITDAT---LI  150 (163)
Q Consensus        81 L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~i~~~~~~~l~~~----~~~L~~L~l~~~~~l~~~~---~~  150 (163)
                      |++|+++++ .+++.++..+   ...+++|++|+++++ .+++.++..+.+.    .++|++|++++| .+++..   +.
T Consensus        87 L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~  163 (461)
T 1z7x_W           87 IQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLA  163 (461)
T ss_dssp             CCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHH
T ss_pred             eeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHH
Confidence            999999886 4776543333   346789999999885 4887777666553    357999999998 777644   34


Q ss_pred             HHHhCCCCCccCC
Q psy9589         151 HLALGCPRLEKLI  163 (163)
Q Consensus       151 ~l~~~~~~L~~L~  163 (163)
                      ..+..+++|++|+
T Consensus       164 ~~l~~~~~L~~L~  176 (461)
T 1z7x_W          164 SVLRAKPDFKELT  176 (461)
T ss_dssp             HHHHHCTTCCEEE
T ss_pred             HHHhhCCCCCEEE
Confidence            4455678888763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.40  E-value=1.8e-11  Score=82.91  Aligned_cols=122  Identities=16%  Similarity=0.183  Sum_probs=96.4

Q ss_pred             hHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHH---hCCC
Q psy9589          30 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQ  106 (163)
Q Consensus        30 ~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~  106 (163)
                      +..+..+...++.|++|++++|..+++.|+..++.         .....+.|++|+|+++ .+++.+...++.   ..++
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~---------~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~   94 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAE---------ALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNT   94 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHH---------HHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH---------HHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCC
Confidence            35556677789999999999976899998887765         2346789999999995 699998877764   4589


Q ss_pred             CCEEEecCCCCCCHHHHHHHHHc---CCCCCEEec--cCCCCCChHHHHHHH---hCCCCCccCC
Q psy9589         107 LHTLEVASCSQFTDTGFQALARN---CRLLAKMDL--EECVLITDATLIHLA---LGCPRLEKLI  163 (163)
Q Consensus       107 L~~L~l~~~~~i~~~~~~~l~~~---~~~L~~L~l--~~~~~l~~~~~~~l~---~~~~~L~~L~  163 (163)
                      |++|+|++| .+++.++..+++.   .+.|++|++  ++| .+++++...+.   +.++.|++|+
T Consensus        95 L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~  157 (185)
T 1io0_A           95 LKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFG  157 (185)
T ss_dssp             CCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred             cCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEe
Confidence            999999985 7999998888654   579999999  787 99998755444   4567777653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.30  E-value=9e-12  Score=92.53  Aligned_cols=143  Identities=15%  Similarity=0.192  Sum_probs=71.7

Q ss_pred             CCCcEEeecCCCCCCh---HHHHHHHHhC-CcCCEEEecCCCCCChHHHHHHHhc----C----------------CHHH
Q psy9589          15 PNLYYLCLSGCSQLTD---ASLIVLAQRC-HQLHTLEVASCSQFTDTGFQALARG----L----------------LDSA   70 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~---~~l~~i~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~----~----------------~~~~   70 (163)
                      ++|++|++++|. +++   ..+......+ ++|++|++++| .++..+...++..    +                ....
T Consensus        80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  157 (362)
T 3goz_A           80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE  157 (362)
T ss_dssp             TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence            677777777754 333   2222333334 66777777766 4554444443321    0                1222


Q ss_pred             HHHHHhcCC-CCceEecCCCCCCCHHHHHH---HHHhC-CCCCEEEecCCCCCCHHHHHHHHH---c-CCCCCEEeccCC
Q psy9589          71 VLSLAENCP-NLYYLCLSGCSQLTDASLIV---LAQRC-HQLHTLEVASCSQFTDTGFQALAR---N-CRLLAKMDLEEC  141 (163)
Q Consensus        71 ~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~---l~~~~-~~L~~L~l~~~~~i~~~~~~~l~~---~-~~~L~~L~l~~~  141 (163)
                      +.......+ +|++|+++++ .+++.+...   ....+ ++|++|++++| .+++.+...++.   . .++|++|++++|
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N  235 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN  235 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred             HHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence            223333444 6777777774 344333322   22244 37777777764 466544333322   2 346777777776


Q ss_pred             CCCChH---HHHHHHhCCCCCccC
Q psy9589         142 VLITDA---TLIHLALGCPRLEKL  162 (163)
Q Consensus       142 ~~l~~~---~~~~l~~~~~~L~~L  162 (163)
                       .+++.   .+..+.+.+++|+.|
T Consensus       236 -~l~~~~~~~l~~~~~~l~~L~~L  258 (362)
T 3goz_A          236 -CLHGPSLENLKLLKDSLKHLQTV  258 (362)
T ss_dssp             -CCCCCCHHHHHHTTTTTTTCSEE
T ss_pred             -CCCcHHHHHHHHHHhcCCCccEE
Confidence             55553   333333445555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.29  E-value=1e-10  Score=86.87  Aligned_cols=43  Identities=21%  Similarity=0.225  Sum_probs=20.1

Q ss_pred             cCC-CCcEEeecCCCCCChHHH---HHHHHh-CCcCCEEEecCCCCCChH
Q psy9589          13 NCP-NLYYLCLSGCSQLTDASL---IVLAQR-CHQLHTLEVASCSQFTDT   57 (163)
Q Consensus        13 ~~~-~L~~L~l~~~~~~~~~~l---~~i~~~-~~~L~~L~l~~~~~~~~~   57 (163)
                      .++ +|++|++++|. +++...   ..+... +++|++|++++| .+++.
T Consensus        48 ~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~   95 (362)
T 3goz_A           48 NTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGN-FLSYK   95 (362)
T ss_dssp             TCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGS
T ss_pred             hCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCC-cCChH
Confidence            445 56666666643 333222   222222 256666666665 34433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.27  E-value=2.1e-12  Score=84.30  Aligned_cols=131  Identities=21%  Similarity=0.232  Sum_probs=92.4

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ...++|++|++++|. +++..+......+++|++|++++| .++..  ..             ...+++|++|+++++ .
T Consensus        14 ~~~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~-------------~~~l~~L~~L~Ls~n-~   75 (149)
T 2je0_A           14 RTPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI--AN-------------LPKLNKLKKLELSDN-R   75 (149)
T ss_dssp             CCGGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TT-------------CCCCTTCCEEECCSS-C
T ss_pred             CCCccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc--hh-------------hhcCCCCCEEECCCC-c
Confidence            345889999999975 443233334466899999999998 55443  11             136789999999996 4


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHH--HHHHhCCCCCccCC
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATL--IHLALGCPRLEKLI  163 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~--~~l~~~~~~L~~L~  163 (163)
                      ++.. +......+++|+.|+++++ .+++.........+++|++|++++| .++....  ...+..+++|+.||
T Consensus        76 i~~~-~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~  146 (149)
T 2je0_A           76 VSGG-LEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLD  146 (149)
T ss_dssp             CCSC-THHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEET
T ss_pred             ccch-HHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCccccc
Confidence            5543 3445547999999999995 5776433234466899999999998 6665322  24567899998875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.27  E-value=1.8e-12  Score=88.58  Aligned_cols=77  Identities=16%  Similarity=0.167  Sum_probs=47.5

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGC  156 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  156 (163)
                      .+++|++|+++++ .+++.....+. .+++|+.|++++|..+++-.   ....+++|+.|++++| .+++..   ....+
T Consensus       110 ~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n-~i~~~~---~l~~l  180 (197)
T 4ezg_A          110 GLTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFD-GVHDYR---GIEDF  180 (197)
T ss_dssp             TCTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTB-CCCCCT---TGGGC
T ss_pred             CCCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCC-CCcChH---HhccC
Confidence            4677777777774 45554455554 67777777777754355432   1345677888888777 555521   23466


Q ss_pred             CCCccC
Q psy9589         157 PRLEKL  162 (163)
Q Consensus       157 ~~L~~L  162 (163)
                      ++|+.|
T Consensus       181 ~~L~~L  186 (197)
T 4ezg_A          181 PKLNQL  186 (197)
T ss_dssp             SSCCEE
T ss_pred             CCCCEE
Confidence            777655

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=99.22  E-value=8.3e-10  Score=75.17  Aligned_cols=130  Identities=13%  Similarity=0.187  Sum_probs=101.3

Q ss_pred             HhHHHHHhcCCCCcEEeecCCCCCChHHHHHHHHh---CCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCC
Q psy9589           5 ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQR---CHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNL   81 (163)
Q Consensus         5 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L   81 (163)
                      +.+..+...-+.|++|+|+++..+.+.+.+.++..   -..|++|+|++| .+++.|...++.         ..+..+.|
T Consensus        31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~---------aL~~N~tL  100 (197)
T 1pgv_A           31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIE---------LIETSPSL  100 (197)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHH---------HHHHCSSC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHH---------HHhcCCcc
Confidence            45666777889999999988657899888877754   457999999997 899998887765         34566889


Q ss_pred             ceEecCCCCCCCHHHHHHHHHhC---CCCCEEEecCC-C-CCCHHHHHHHH---HcCCCCCEEeccCCCCCCh
Q psy9589          82 YYLCLSGCSQLTDASLIVLAQRC---HQLHTLEVASC-S-QFTDTGFQALA---RNCRLLAKMDLEECVLITD  146 (163)
Q Consensus        82 ~~L~l~~~~~~~~~~~~~l~~~~---~~L~~L~l~~~-~-~i~~~~~~~l~---~~~~~L~~L~l~~~~~l~~  146 (163)
                      ++|+|++ ..+++.+...+++.+   +.|++|+|+++ . .+.+.+..+++   +.-+.|+.|+++.+ .+..
T Consensus       101 ~~L~L~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~-~~g~  171 (197)
T 1pgv_A          101 RVLNVES-NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA-SMEA  171 (197)
T ss_dssp             CEEECCS-SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC-CHHH
T ss_pred             CeEecCC-CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC-CccH
Confidence            9999999 579999999998765   57999999864 2 57777654443   34589999999986 4443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.18  E-value=3.6e-11  Score=89.48  Aligned_cols=74  Identities=19%  Similarity=0.300  Sum_probs=37.7

Q ss_pred             CCCCceEecCCCCCCCHHHHHHHHH--hCCCCCEEEecCCCCCCHHHHHHHHH---cCCCCCEEeccCCCCCChHHHHHH
Q psy9589          78 CPNLYYLCLSGCSQLTDASLIVLAQ--RCHQLHTLEVASCSQFTDTGFQALAR---NCRLLAKMDLEECVLITDATLIHL  152 (163)
Q Consensus        78 ~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l  152 (163)
                      +|+|++|++.+| .+.+.+...++.  .+|+|++|+|+. +.+++.+...++.   .+++|+.|++++| .++++.+..+
T Consensus       251 ~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l  327 (362)
T 2ra8_A          251 FPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKEL  327 (362)
T ss_dssp             CTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHH
T ss_pred             CCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHH
Confidence            455555555553 344444444442  245566666654 3455555444432   2456666666665 5665555554


Q ss_pred             Hh
Q psy9589         153 AL  154 (163)
Q Consensus       153 ~~  154 (163)
                      .+
T Consensus       328 ~~  329 (362)
T 2ra8_A          328 QK  329 (362)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.17  E-value=3.2e-12  Score=85.01  Aligned_cols=131  Identities=20%  Similarity=0.223  Sum_probs=89.6

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ...++|++|++++|. +++..+......+++|++|++++| .++..  ..             ...+++|++|+++++. 
T Consensus        21 ~~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~--~~-------------~~~l~~L~~L~Ls~N~-   82 (168)
T 2ell_A           21 RTPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINV-GLISV--SN-------------LPKLPKLKKLELSENR-   82 (168)
T ss_dssp             SCTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESS-CCCCC--SS-------------CCCCSSCCEEEEESCC-
T ss_pred             CCcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCC-CCCCh--hh-------------hccCCCCCEEECcCCc-
Confidence            345899999999976 443233333466899999999998 45443  11             1267899999999964 


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHH--HHHHHhCCCCCccCC
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDAT--LIHLALGCPRLEKLI  163 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~--~~~l~~~~~~L~~L~  163 (163)
                      +.+. +......+++|+.|++++| .+++.........+++|+.|++++| .++...  ....+..+|+|+.|+
T Consensus        83 l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~  153 (168)
T 2ell_A           83 IFGG-LDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLD  153 (168)
T ss_dssp             CCSC-CCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEET
T ss_pred             CchH-HHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEec
Confidence            5442 3444547999999999986 5665321122355899999999998 665432  124567899998775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.10  E-value=1e-09  Score=81.67  Aligned_cols=138  Identities=20%  Similarity=0.175  Sum_probs=95.3

Q ss_pred             HHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEec
Q psy9589           7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCL   86 (163)
Q Consensus         7 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l   86 (163)
                      +..+...+|+|++|.++++..+.-..   +  ..++|++|++..| .++..++..++.           ..+|+|++|+|
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~l~~---~--~~~~L~~L~L~~~-~l~~~~l~~l~~-----------~~lp~L~~L~L  226 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLSIGK---K--PRPNLKSLEIISG-GLPDSVVEDILG-----------SDLPNLEKLVL  226 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCBCCS---C--BCTTCSEEEEECS-BCCHHHHHHHHH-----------SBCTTCCEEEE
T ss_pred             HHHHHhcCCCCcEEEEeCCCCceecc---c--cCCCCcEEEEecC-CCChHHHHHHHH-----------ccCCCCcEEEE
Confidence            44567789999999998863332211   1  2789999999876 678777766653           26899999998


Q ss_pred             CCCCC--CCHH---HHHHHH--HhCCCCCEEEecCCCCCCHHHHHHHHH--cCCCCCEEeccCCCCCChHHHHHHHhC--
Q psy9589          87 SGCSQ--LTDA---SLIVLA--QRCHQLHTLEVASCSQFTDTGFQALAR--NCRLLAKMDLEECVLITDATLIHLALG--  155 (163)
Q Consensus        87 ~~~~~--~~~~---~~~~l~--~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~--  155 (163)
                      +....  ..+.   .+..+.  ..+|+|+.|++.+| .+++.+...+++  .+|+|++|++++| .+++.+...+...  
T Consensus       227 ~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~  304 (362)
T 2ra8_A          227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVD  304 (362)
T ss_dssp             ECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHH
T ss_pred             eccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcc
Confidence            63211  1111   111121  25899999999885 577666666665  4789999999997 8999887777643  


Q ss_pred             -CCCCccCC
Q psy9589         156 -CPRLEKLI  163 (163)
Q Consensus       156 -~~~L~~L~  163 (163)
                       +++|+.|+
T Consensus       305 ~l~~L~~L~  313 (362)
T 2ra8_A          305 KIKHLKFIN  313 (362)
T ss_dssp             HHTTCSEEE
T ss_pred             cCCcceEEE
Confidence             67777653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.05  E-value=5.8e-11  Score=80.96  Aligned_cols=124  Identities=20%  Similarity=0.238  Sum_probs=89.8

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL   92 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   92 (163)
                      .+++|++|+++++.. ++..   -...+++|++|++++| .++...  .             ...+++|++|+++++ .+
T Consensus        42 ~l~~L~~L~l~~n~i-~~l~---~l~~l~~L~~L~l~~n-~~~~~~--~-------------l~~l~~L~~L~l~~n-~l  100 (197)
T 4ezg_A           42 QMNSLTYITLANINV-TDLT---GIEYAHNIKDLTINNI-HATNYN--P-------------ISGLSNLERLRIMGK-DV  100 (197)
T ss_dssp             HHHTCCEEEEESSCC-SCCT---TGGGCTTCSEEEEESC-CCSCCG--G-------------GTTCTTCCEEEEECT-TC
T ss_pred             hcCCccEEeccCCCc-cChH---HHhcCCCCCEEEccCC-CCCcch--h-------------hhcCCCCCEEEeECC-cc
Confidence            468999999999654 3311   2466999999999998 444321  1             236899999999995 56


Q ss_pred             CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589          93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI  163 (163)
Q Consensus        93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~  163 (163)
                      ++.....+. .+++|++|++++| .+++.....+ ..+++|++|++++|..+++-.   ....+++|+.|+
T Consensus       101 ~~~~~~~l~-~l~~L~~L~Ls~n-~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~  165 (197)
T 4ezg_A          101 TSDKIPNLS-GLTSLTLLDISHS-AHDDSILTKI-NTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLN  165 (197)
T ss_dssp             BGGGSCCCT-TCTTCCEEECCSS-BCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEE
T ss_pred             CcccChhhc-CCCCCCEEEecCC-ccCcHhHHHH-hhCCCCCEEEccCCCCccccH---hhcCCCCCCEEE
Confidence            654455554 7899999999995 6777555545 468999999999994366632   346788888763

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=99.02  E-value=1e-08  Score=69.82  Aligned_cols=128  Identities=13%  Similarity=0.179  Sum_probs=94.9

Q ss_pred             CCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHH-
Q psy9589          24 GCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ-  102 (163)
Q Consensus        24 ~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-  102 (163)
                      .+..--+..+..+...-+.|++|+++++..+.+.|+..++..         .+....|++|+|+++ .++|.+...++. 
T Consensus        24 ~N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~a---------L~~N~~L~~L~L~~n-~igd~ga~alA~a   93 (197)
T 1pgv_A           24 DNDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEA---------ACNSKHIEKFSLANT-AISDSEARGLIEL   93 (197)
T ss_dssp             ---CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHH---------HTTCSCCCEEECTTS-CCBHHHHTTHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHH---------HhhCCCcCEEEccCC-CCChHHHHHHHHH
Confidence            334334466777777889999999998668999998888752         235678999999995 699999877764 


Q ss_pred             --hCCCCCEEEecCCCCCCHHHHHHHHHcC---CCCCEEeccCCC--CCChHH---HHHHHhCCCCCccC
Q psy9589         103 --RCHQLHTLEVASCSQFTDTGFQALARNC---RLLAKMDLEECV--LITDAT---LIHLALGCPRLEKL  162 (163)
Q Consensus       103 --~~~~L~~L~l~~~~~i~~~~~~~l~~~~---~~L~~L~l~~~~--~l~~~~---~~~l~~~~~~L~~L  162 (163)
                        .-+.|++|+|++ +.|++.+..++++.+   +.|++|+++++.  .+.+.+   +.+..+.-+.|++|
T Consensus        94 L~~N~tL~~L~L~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L  162 (197)
T 1pgv_A           94 IETSPSLRVLNVES-NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRV  162 (197)
T ss_dssp             HHHCSSCCEEECCS-SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred             HhcCCccCeEecCC-CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeE
Confidence              358899999998 579999998887754   689999999753  567754   33444455556544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.98  E-value=1.3e-09  Score=70.90  Aligned_cols=109  Identities=24%  Similarity=0.324  Sum_probs=77.0

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|++|++++|.. ++.   .....+++|++|++++| .++...             ......+++|++|+++++ .
T Consensus        39 ~~l~~L~~L~l~~n~l-~~~---~~~~~l~~L~~L~Ls~n-~i~~~~-------------~~~~~~l~~L~~L~ls~N-~   99 (149)
T 2je0_A           39 DEFEELEFLSTINVGL-TSI---ANLPKLNKLKKLELSDN-RVSGGL-------------EVLAEKCPNLTHLNLSGN-K   99 (149)
T ss_dssp             TTCTTCCEEECTTSCC-CCC---TTCCCCTTCCEEECCSS-CCCSCT-------------HHHHHHCTTCCEEECTTS-C
T ss_pred             hhcCCCcEEECcCCCC-CCc---hhhhcCCCCCEEECCCC-cccchH-------------HHHhhhCCCCCEEECCCC-c
Confidence            5689999999999764 433   33456899999999998 454321             122336899999999996 4


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHH--HHHHHcCCCCCEEeccC
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGF--QALARNCRLLAKMDLEE  140 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~--~~l~~~~~~L~~L~l~~  140 (163)
                      +++.........+++|++|++++| .+++...  ......+++|+.|++++
T Consensus       100 i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          100 IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence            666433233348999999999996 4654332  23456689999999864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.95  E-value=1.8e-09  Score=79.33  Aligned_cols=121  Identities=19%  Similarity=0.193  Sum_probs=72.0

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL   92 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   92 (163)
                      .+++|++|++++|.......    ...+++|++|++++| .++...               ....+++|++|+++++ .+
T Consensus       219 ~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~---------------~~~~l~~L~~L~l~~n-~l  277 (347)
T 4fmz_A          219 NMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTN-QISDIN---------------AVKDLTKLKMLNVGSN-QI  277 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS-CCCCCG---------------GGTTCTTCCEEECCSS-CC
T ss_pred             cCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCC-ccCCCh---------------hHhcCCCcCEEEccCC-cc
Confidence            45666666666654322221    344666666666665 333210               1235678888888875 34


Q ss_pred             CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589          93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI  163 (163)
Q Consensus        93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~  163 (163)
                      ++.  .. ...+++|+.|++++| .+++.....+ ..+++|++|++++| .++....   ...+++|++|+
T Consensus       278 ~~~--~~-~~~l~~L~~L~L~~n-~l~~~~~~~l-~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~  339 (347)
T 4fmz_A          278 SDI--SV-LNNLSQLNSLFLNNN-QLGNEDMEVI-GGLTNLTTLFLSQN-HITDIRP---LASLSKMDSAD  339 (347)
T ss_dssp             CCC--GG-GGGCTTCSEEECCSS-CCCGGGHHHH-HTCTTCSEEECCSS-SCCCCGG---GGGCTTCSEES
T ss_pred             CCC--hh-hcCCCCCCEEECcCC-cCCCcChhHh-hccccCCEEEccCC-ccccccC---hhhhhccceee
Confidence            432  22 336788888888885 4665554444 45788888888888 5554321   45777777664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.94  E-value=5.6e-10  Score=81.23  Aligned_cols=67  Identities=24%  Similarity=0.201  Sum_probs=34.8

Q ss_pred             cCCCCceEecCCCCCCCHH-HH-HHH-HHhCCCCCEEEecCCCCCCH--HHHHHHHHcCCCCCEEeccCCCCCCh
Q psy9589          77 NCPNLYYLCLSGCSQLTDA-SL-IVL-AQRCHQLHTLEVASCSQFTD--TGFQALARNCRLLAKMDLEECVLITD  146 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~-~~-~~l-~~~~~~L~~L~l~~~~~i~~--~~~~~l~~~~~~L~~L~l~~~~~l~~  146 (163)
                      .+++|++|+++++. +... .+ ..+ ...+++|++|+++++ .++.  .....+...+++|++|++++| .++.
T Consensus       171 ~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~  242 (312)
T 1wwl_A          171 VFPALSTLDLSDNP-ELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRD  242 (312)
T ss_dssp             CCSSCCEEECCSCT-TCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCS
T ss_pred             cCCCCCEEECCCCC-cCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCc
Confidence            45667777776643 3322 11 122 135667777777664 4542  122234445667777777766 4443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.90  E-value=5.1e-10  Score=74.92  Aligned_cols=128  Identities=13%  Similarity=0.082  Sum_probs=70.0

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL   92 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   92 (163)
                      .+++|++|++++|.. +.  +..+....|+|++|++++| .++..  ..             ...+++|++|+++++ .+
T Consensus        17 ~~~~L~~L~l~~n~l-~~--i~~~~~~~~~L~~L~Ls~N-~l~~~--~~-------------l~~l~~L~~L~Ls~N-~l   76 (176)
T 1a9n_A           17 NAVRDRELDLRGYKI-PV--IENLGATLDQFDAIDFSDN-EIRKL--DG-------------FPLLRRLKTLLVNNN-RI   76 (176)
T ss_dssp             CTTSCEEEECTTSCC-CS--CCCGGGGTTCCSEEECCSS-CCCEE--CC-------------CCCCSSCCEEECCSS-CC
T ss_pred             CcCCceEEEeeCCCC-ch--hHHhhhcCCCCCEEECCCC-CCCcc--cc-------------cccCCCCCEEECCCC-cc
Confidence            467788888887643 32  1234444568888888886 44432  11             125667777777774 34


Q ss_pred             CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChH--HHHHHHhCCCCCccCC
Q psy9589          93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDA--TLIHLALGCPRLEKLI  163 (163)
Q Consensus        93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~--~~~~l~~~~~~L~~L~  163 (163)
                      +... ..+...+++|+.|+++++ .+++-........+++|++|++++| .++..  ....+...+|+|+.||
T Consensus        77 ~~~~-~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld  146 (176)
T 1a9n_A           77 CRIG-EGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLD  146 (176)
T ss_dssp             CEEC-SCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccC-cchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeC
Confidence            4221 122236777777777764 3443221112234677777777776 44321  1122345667776654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.87  E-value=1.9e-10  Score=83.71  Aligned_cols=134  Identities=18%  Similarity=0.131  Sum_probs=86.8

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHH-HHhCCcCCEEEecCCCCCChH--HHHHHHhcCCHHHHHHHHhcCCCCceEecCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVL-AQRCHQLHTLEVASCSQFTDT--GFQALARGLLDSAVLSLAENCPNLYYLCLSGC   89 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i-~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   89 (163)
                      .+++|++|++++|.. +...-..+ ...+++|++|++++| .++..  .+..+..           ...++|++|+++++
T Consensus        93 ~l~~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~-----------~~~~~L~~L~L~~N  159 (312)
T 1wwl_A           93 GISGLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQ-----------WLKPGLKVLSIAQA  159 (312)
T ss_dssp             TTSCCCEEEEEEEBC-BSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHT-----------TCCTTCCEEEEESC
T ss_pred             CcCCccEEEccCCcc-cchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHH-----------hhcCCCcEEEeeCC
Confidence            589999999999763 32111111 256899999999997 44432  1111111           12389999999985


Q ss_pred             CCCCHHHHHHHHHhCCCCCEEEecCCCCCCHH-HHH-HH-HHcCCCCCEEeccCCCCCCh--HHHHHHHhCCCCCccCC
Q psy9589          90 SQLTDASLIVLAQRCHQLHTLEVASCSQFTDT-GFQ-AL-ARNCRLLAKMDLEECVLITD--ATLIHLALGCPRLEKLI  163 (163)
Q Consensus        90 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~-~~~-~l-~~~~~~L~~L~l~~~~~l~~--~~~~~l~~~~~~L~~L~  163 (163)
                       .+.......+. .+++|++|+++++. +... ++. .+ ...+++|++|++++| .++.  .....++..+++|+.|+
T Consensus       160 -~l~~~~~~~~~-~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~  234 (312)
T 1wwl_A          160 -HSLNFSCEQVR-VFPALSTLDLSDNP-ELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLD  234 (312)
T ss_dssp             -SCCCCCTTTCC-CCSSCCEEECCSCT-TCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEE
T ss_pred             -CCccchHHHhc-cCCCCCEEECCCCC-cCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEE
Confidence             45443323333 78999999999864 4432 222 22 156899999999998 7773  33446667888888764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.86  E-value=2.3e-09  Score=77.34  Aligned_cols=35  Identities=20%  Similarity=0.101  Sum_probs=17.2

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      .+++|++|++++|....-..    ...+++|++|++++|
T Consensus        66 ~l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           66 YLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDEN  100 (291)
T ss_dssp             GCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS
T ss_pred             cCCCCCEEEccCCccCCCcc----cccCCCCCEEECCCC
Confidence            35566666666544221111    234555566666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.85  E-value=7.5e-10  Score=73.41  Aligned_cols=109  Identities=27%  Similarity=0.308  Sum_probs=77.4

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|++|++++|. ++..   .....+++|++|++++| .++.. +            ..+...+++|++|+++++ .
T Consensus        46 ~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~------------~~~~~~l~~L~~L~Ls~N-~  106 (168)
T 2ell_A           46 AEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSEN-RIFGG-L------------DMLAEKLPNLTHLNLSGN-K  106 (168)
T ss_dssp             GGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESC-CCCSC-C------------CHHHHHCTTCCEEECBSS-S
T ss_pred             HhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCC-cCchH-H------------HHHHhhCCCCCEEeccCC-c
Confidence            467999999999976 4443   33456899999999998 44431 1            112336899999999996 4


Q ss_pred             CCHHH-HHHHHHhCCCCCEEEecCCCCCCHHHH--HHHHHcCCCCCEEeccCC
Q psy9589          92 LTDAS-LIVLAQRCHQLHTLEVASCSQFTDTGF--QALARNCRLLAKMDLEEC  141 (163)
Q Consensus        92 ~~~~~-~~~l~~~~~~L~~L~l~~~~~i~~~~~--~~l~~~~~~L~~L~l~~~  141 (163)
                      +++.. +..+. .+++|+.|+++++ .++....  ......+++|++|++++|
T Consensus       107 l~~~~~~~~l~-~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          107 LKDISTLEPLK-KLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             CCSSGGGGGGS-SCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             cCcchhHHHHh-cCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence            65532 23333 7899999999996 4554321  234567899999999998

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.84  E-value=2.9e-09  Score=77.41  Aligned_cols=35  Identities=20%  Similarity=0.100  Sum_probs=17.5

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      .+++|++|++++|....-..    ...+++|++|++++|
T Consensus        61 ~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n   95 (308)
T 1h6u_A           61 YLNNLIGLELKDNQITDLAP----LKNLTKITELELSGN   95 (308)
T ss_dssp             GCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSC
T ss_pred             ccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCC
Confidence            45566666666543221111    334556666666655

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.84  E-value=2.6e-09  Score=78.46  Aligned_cols=35  Identities=23%  Similarity=0.219  Sum_probs=15.9

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      .+++|++|++++|...+-..    ...+++|++|++++|
T Consensus        64 ~~~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~L~~n   98 (347)
T 4fmz_A           64 YLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTN   98 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS
T ss_pred             hcCCccEEEccCCccccchh----hhcCCcCCEEEccCC
Confidence            34555555555543211111    234555555555554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.82  E-value=5.3e-10  Score=81.25  Aligned_cols=38  Identities=16%  Similarity=0.137  Sum_probs=17.7

Q ss_pred             hCCCCCEEEecCCCCCCH--HHHHHHHHcCCCCCEEeccCC
Q psy9589         103 RCHQLHTLEVASCSQFTD--TGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus       103 ~~~~L~~L~l~~~~~i~~--~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .+++|++|++++| .++.  .....+...+++|++|++++|
T Consensus       195 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N  234 (310)
T 4glp_A          195 KFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN  234 (310)
T ss_dssp             SSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred             cCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC
Confidence            4555555555553 3431  111222334555555555555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.82  E-value=2.4e-09  Score=84.62  Aligned_cols=74  Identities=28%  Similarity=0.308  Sum_probs=34.8

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGC  156 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  156 (163)
                      .+++|+.|+|+++ .+++.  ..+ ..+++|+.|+|++| .+++...   ...+++|+.|++++| .+++.  .. +..+
T Consensus       129 ~l~~L~~L~Ls~N-~l~~l--~~l-~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l--~~-l~~l  196 (605)
T 1m9s_A          129 HLPQLESLYLGNN-KITDI--TVL-SRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDL--RA-LAGL  196 (605)
T ss_dssp             GCTTCSEEECCSS-CCCCC--GGG-GSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBC--GG-GTTC
T ss_pred             CCCccCEEECCCC-ccCCc--hhh-cccCCCCEEECcCC-cCCCchh---hccCCCCCEEECcCC-CCCCC--hH-HccC
Confidence            4455555555553 23221  112 24556666666553 2332211   234566666666666 55442  11 3455


Q ss_pred             CCCccC
Q psy9589         157 PRLEKL  162 (163)
Q Consensus       157 ~~L~~L  162 (163)
                      ++|+.|
T Consensus       197 ~~L~~L  202 (605)
T 1m9s_A          197 KNLDVL  202 (605)
T ss_dssp             TTCSEE
T ss_pred             CCCCEE
Confidence            555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.81  E-value=4.5e-09  Score=75.82  Aligned_cols=121  Identities=25%  Similarity=0.256  Sum_probs=83.1

Q ss_pred             HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589          11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS   90 (163)
Q Consensus        11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   90 (163)
                      ...+++|++|++++|.. ++.  .. ...+++|++|++++| .++...  .             ...+++|++|+++++ 
T Consensus        86 l~~l~~L~~L~l~~n~l-~~~--~~-l~~l~~L~~L~L~~n-~i~~~~--~-------------l~~l~~L~~L~l~~n-  144 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKV-KDL--SS-LKDLKKLKSLSLEHN-GISDIN--G-------------LVHLPQLESLYLGNN-  144 (291)
T ss_dssp             GTTCTTCCEEECCSSCC-CCG--GG-GTTCTTCCEEECTTS-CCCCCG--G-------------GGGCTTCCEEECCSS-
T ss_pred             cccCCCCCEEECCCCcC-CCC--hh-hccCCCCCEEECCCC-cCCCCh--h-------------hcCCCCCCEEEccCC-
Confidence            35689999999999764 331  11 456899999999998 444321  1             126789999999986 


Q ss_pred             CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589          91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI  163 (163)
Q Consensus        91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~  163 (163)
                      .+++.  ..+ ..+++|+.|++++| .+++...   ...+++|+.|++++| .+++.  .. ...+++|+.|+
T Consensus       145 ~l~~~--~~l-~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N-~i~~l--~~-l~~l~~L~~L~  206 (291)
T 1h6t_A          145 KITDI--TVL-SRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDL--RA-LAGLKNLDVLE  206 (291)
T ss_dssp             CCCCC--GGG-GGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBC--GG-GTTCTTCSEEE
T ss_pred             cCCcc--hhh-ccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCC-cCCCC--hh-hccCCCCCEEE
Confidence            45443  233 37899999999885 4654332   456889999999998 77663  22 45677777653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.80  E-value=8.8e-11  Score=80.14  Aligned_cols=128  Identities=16%  Similarity=0.081  Sum_probs=81.1

Q ss_pred             HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589          11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS   90 (163)
Q Consensus        11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   90 (163)
                      ...+++|++|++++|.. +.  +. ....+++|+.|++++| .++.-              ......+++|++|+++++ 
T Consensus        44 ~~~l~~L~~L~ls~n~l-~~--l~-~~~~l~~L~~L~l~~n-~l~~l--------------~~~~~~~~~L~~L~L~~N-  103 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNI-EK--IS-SLSGMENLRILSLGRN-LIKKI--------------ENLDAVADTLEELWISYN-  103 (198)
T ss_dssp             HHHTTTCSEEECSEEEE-SC--CC-CHHHHTTCCEEEEEEE-EECSC--------------SSHHHHHHHCSEEEEEEE-
T ss_pred             HhcCCCCCEEECCCCCC-cc--cc-ccccCCCCCEEECCCC-Ccccc--------------cchhhcCCcCCEEECcCC-
Confidence            34578888888887643 33  11 3345788888888887 33311              011123568999999885 


Q ss_pred             CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChH---------HHHHHHhCCCCCcc
Q psy9589          91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDA---------TLIHLALGCPRLEK  161 (163)
Q Consensus        91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~---------~~~~l~~~~~~L~~  161 (163)
                      .++..  ..+. .+++|+.|+++++ .+++-+.......+++|++|++++| .++..         ....+...+|+|+.
T Consensus       104 ~l~~l--~~~~-~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~  178 (198)
T 1ds9_A          104 QIASL--SGIE-KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             ECCCH--HHHH-HHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred             cCCcC--Cccc-cCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEE
Confidence            45542  3444 6789999999884 5665332223456889999999998 55432         12334567888887


Q ss_pred             CC
Q psy9589         162 LI  163 (163)
Q Consensus       162 L~  163 (163)
                      ||
T Consensus       179 Ld  180 (198)
T 1ds9_A          179 LD  180 (198)
T ss_dssp             EC
T ss_pred             EC
Confidence            75

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.79  E-value=3.1e-10  Score=81.09  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=19.9

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      .+++|++|++++|....-.    ....+++|++|++++|
T Consensus        61 ~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           61 YLPNVRYLALGGNKLHDIS----ALKELTNLTYLILTGN   95 (272)
T ss_dssp             GCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECTTS
T ss_pred             cCCCCcEEECCCCCCCCch----hhcCCCCCCEEECCCC
Confidence            4667777777665432211    2234666777777665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.77  E-value=7.4e-09  Score=75.24  Aligned_cols=74  Identities=20%  Similarity=0.248  Sum_probs=38.7

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGC  156 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  156 (163)
                      .+++|++|+++++ .+++...   ...+++|+.|+++++ .+++...   ...+++|++|++++| .++...  . ...+
T Consensus       149 ~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N-~l~~~~--~-l~~l  216 (308)
T 1h6u_A          149 GLTNLQYLSIGNA-QVSDLTP---LANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN-QISDVS--P-LANT  216 (308)
T ss_dssp             GCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBCG--G-GTTC
T ss_pred             CCCCccEEEccCC-cCCCChh---hcCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCC-ccCccc--c-ccCC
Confidence            4556666666654 2332111   225666666666663 3443221   244677777777776 555432  1 3466


Q ss_pred             CCCccC
Q psy9589         157 PRLEKL  162 (163)
Q Consensus       157 ~~L~~L  162 (163)
                      ++|+.|
T Consensus       217 ~~L~~L  222 (308)
T 1h6u_A          217 SNLFIV  222 (308)
T ss_dssp             TTCCEE
T ss_pred             CCCCEE
Confidence            666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.76  E-value=1.3e-10  Score=83.39  Aligned_cols=56  Identities=16%  Similarity=0.084  Sum_probs=26.3

Q ss_pred             hCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589         103 RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus       103 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      .+++|+.|+++++ .++......+ ..+++|+.|++++| .++.... ..+..+++|+.|
T Consensus       175 ~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L  230 (285)
T 1ozn_A          175 GLHSLDRLLLHQN-RVAHVHPHAF-RDLGRLMTLYLFAN-NLSALPT-EALAPLRALQYL  230 (285)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCSCCCH-HHHTTCTTCCEE
T ss_pred             CccccCEEECCCC-cccccCHhHc-cCcccccEeeCCCC-cCCcCCH-HHcccCcccCEE
Confidence            3455555555543 2332211111 33566777777766 4444211 233466666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.75  E-value=6.4e-10  Score=80.82  Aligned_cols=84  Identities=14%  Similarity=0.139  Sum_probs=53.1

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHH--HHcCCCCCEEeccCCCCCCh--HHHHHH
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL--ARNCRLLAKMDLEECVLITD--ATLIHL  152 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l--~~~~~~L~~L~l~~~~~l~~--~~~~~l  152 (163)
                      .+++|++|+++++. +.......+ ..+++|++|+++++.-.+..++...  ...+++|++|++++| .++.  .....+
T Consensus       143 ~~~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l  219 (310)
T 4glp_A          143 LKPGLKVLSIAQAH-SPAFSCEQV-RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAAL  219 (310)
T ss_dssp             BCSCCCEEEEECCS-SCCCCTTSC-CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHH
T ss_pred             hccCCCEEEeeCCC-cchhhHHHh-ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHH
Confidence            67889999998853 433222222 2678999999988542333232211  245789999999998 7763  333345


Q ss_pred             HhCCCCCccCC
Q psy9589         153 ALGCPRLEKLI  163 (163)
Q Consensus       153 ~~~~~~L~~L~  163 (163)
                      +..+++|++||
T Consensus       220 ~~~l~~L~~L~  230 (310)
T 4glp_A          220 AAAGVQPHSLD  230 (310)
T ss_dssp             HHHTCCCSSEE
T ss_pred             HhcCCCCCEEE
Confidence            56778887764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.73  E-value=6.7e-09  Score=82.10  Aligned_cols=120  Identities=22%  Similarity=0.247  Sum_probs=79.5

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|++|+|++|....-..    ...+++|++|++++| .++...  .             ...+++|++|+++++. 
T Consensus        62 ~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N-~l~~l~--~-------------l~~l~~L~~L~Ls~N~-  120 (605)
T 1m9s_A           62 QYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDEN-KIKDLS--S-------------LKDLKKLKSLSLEHNG-  120 (605)
T ss_dssp             GGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSS-CCCCCT--T-------------STTCTTCCEEECTTSC-
T ss_pred             ccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCC-CCCCCh--h-------------hccCCCCCEEEecCCC-
Confidence            468899999998876432222    456899999999987 443311  1             1267889999998863 


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI  163 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~  163 (163)
                      +.+  +..+. .+++|+.|+|++| .+++.   .....+++|+.|++++| .++....   +..+++|+.|+
T Consensus       121 l~~--l~~l~-~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~  181 (605)
T 1m9s_A          121 ISD--INGLV-HLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLY  181 (605)
T ss_dssp             CCC--CGGGG-GCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEE
T ss_pred             CCC--Ccccc-CCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCchh---hccCCCCCEEE
Confidence            443  22333 7889999999885 45543   22345788999999988 6655322   45777777653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.72  E-value=5.1e-09  Score=74.52  Aligned_cols=72  Identities=18%  Similarity=0.123  Sum_probs=37.7

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCC
Q psy9589          79 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPR  158 (163)
Q Consensus        79 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~  158 (163)
                      ++|++|+++++ .+++.  ..+. .+++|+.|+++++ .+++..  . ...+++|+.|++++| .+++.   .....+++
T Consensus       106 ~~L~~L~L~~N-~l~~~--~~l~-~l~~L~~L~Ls~N-~i~~~~--~-l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~  173 (263)
T 1xeu_A          106 ACLSRLFLDNN-ELRDT--DSLI-HLKNLEILSIRNN-KLKSIV--M-LGFLSKLEVLDLHGN-EITNT---GGLTRLKK  173 (263)
T ss_dssp             SSCCEEECCSS-CCSBS--GGGT-TCTTCCEEECTTS-CCCBCG--G-GGGCTTCCEEECTTS-CCCBC---TTSTTCCC
T ss_pred             CcccEEEccCC-ccCCC--hhhc-CcccccEEECCCC-cCCCCh--H-HccCCCCCEEECCCC-cCcch---HHhccCCC
Confidence            45555555553 23321  1222 5677777777663 354422  1 234677777777776 55543   22345555


Q ss_pred             CccC
Q psy9589         159 LEKL  162 (163)
Q Consensus       159 L~~L  162 (163)
                      |+.|
T Consensus       174 L~~L  177 (263)
T 1xeu_A          174 VNWI  177 (263)
T ss_dssp             CCEE
T ss_pred             CCEE
Confidence            5544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.71  E-value=4.6e-10  Score=80.51  Aligned_cols=37  Identities=16%  Similarity=0.112  Sum_probs=18.9

Q ss_pred             hCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589         103 RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus       103 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .+++|+.|+++++ .+++.... ....+++|++|++++|
T Consensus       199 ~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          199 DLGRLMTLYLFAN-NLSALPTE-ALAPLRALQYLRLNDN  235 (285)
T ss_dssp             TCTTCCEEECCSS-CCSCCCHH-HHTTCTTCCEEECCSS
T ss_pred             CcccccEeeCCCC-cCCcCCHH-HcccCcccCEEeccCC
Confidence            4566666666653 34432222 2234566666666665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.67  E-value=4.4e-10  Score=85.46  Aligned_cols=35  Identities=23%  Similarity=0.186  Sum_probs=17.4

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      ++|++|+++++.. ++..- .....+++|++|++++|
T Consensus        30 ~~l~~L~Ls~n~i-~~~~~-~~~~~l~~L~~L~L~~n   64 (455)
T 3v47_A           30 AHVNYVDLSLNSI-AELNE-TSFSRLQDLQFLKVEQQ   64 (455)
T ss_dssp             TTCCEEECCSSCC-CEECT-TTTSSCTTCCEEECCCC
T ss_pred             CccCEEEecCCcc-CcCCh-hHhccCccccEEECcCC
Confidence            4566666666442 22111 11234666666666665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.67  E-value=5e-10  Score=79.03  Aligned_cols=37  Identities=22%  Similarity=0.125  Sum_probs=17.6

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      .+++|++|++++|.. +...- .....+++|++|++++|
T Consensus        57 ~l~~L~~L~L~~n~l-~~~~~-~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           57 GLTKLTWLNLDYNQL-QTLSA-GVFDDLTELGTLGLANN   93 (251)
T ss_dssp             TCTTCCEEECTTSCC-CCCCT-TTTTTCTTCCEEECTTS
T ss_pred             CcccCCEEECCCCcC-CccCH-hHhccCCcCCEEECCCC
Confidence            356666666666432 21110 11233556666666655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.64  E-value=4e-10  Score=88.60  Aligned_cols=34  Identities=21%  Similarity=0.153  Sum_probs=15.6

Q ss_pred             CCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          16 NLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        16 ~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      ++++|+|++|. ++...- .....+++|++|++++|
T Consensus        53 ~~~~LdLs~N~-i~~l~~-~~f~~l~~L~~L~Ls~N   86 (635)
T 4g8a_A           53 STKNLDLSFNP-LRHLGS-YSFFSFPELQVLDLSRC   86 (635)
T ss_dssp             TCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTC
T ss_pred             CCCEEEeeCCC-CCCCCH-HHHhCCCCCCEEECCCC
Confidence            55666666543 221110 01133556666666655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.64  E-value=2.9e-10  Score=81.19  Aligned_cols=65  Identities=18%  Similarity=0.148  Sum_probs=32.0

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT  145 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  145 (163)
                      .+++|++|+++++. +.......+ ..+++|++|+++++ .++...+......+++|+.|++++| .++
T Consensus        98 ~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~  162 (276)
T 2z62_A           98 GLSSLQKLVAVETN-LASLENFPI-GHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQ  162 (276)
T ss_dssp             TCTTCCEEECTTSC-CCCSTTCCC-TTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCC
T ss_pred             CCccccEEECCCCC-ccccCchhc-ccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCC
Confidence            45566666665532 221111112 25666777777663 3433221122244677777777776 444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.63  E-value=2.6e-09  Score=78.85  Aligned_cols=40  Identities=20%  Similarity=0.213  Sum_probs=20.5

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS   52 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~   52 (163)
                      ..+++|++|++++|.. +..........+++|++|++++|.
T Consensus       121 ~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A          121 KPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             TTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             CCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCc
Confidence            4567777777776542 211100112346666666666653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.63  E-value=1.5e-08  Score=67.64  Aligned_cols=113  Identities=17%  Similarity=0.138  Sum_probs=76.6

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ...++|++|++++|. +++.   .....+++|+.|++++| .++....             .++..+++|++|+++++ .
T Consensus        39 ~~~~~L~~L~Ls~N~-l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~~-------------~~~~~l~~L~~L~L~~N-~   99 (176)
T 1a9n_A           39 ATLDQFDAIDFSDNE-IRKL---DGFPLLRRLKTLLVNNN-RICRIGE-------------GLDQALPDLTELILTNN-S   99 (176)
T ss_dssp             GGTTCCSEEECCSSC-CCEE---CCCCCCSSCCEEECCSS-CCCEECS-------------CHHHHCTTCCEEECCSC-C
T ss_pred             hcCCCCCEEECCCCC-CCcc---cccccCCCCCEEECCCC-cccccCc-------------chhhcCCCCCEEECCCC-c
Confidence            345699999999976 4432   22345899999999998 4543210             11236899999999996 4


Q ss_pred             CCHHH-HHHHHHhCCCCCEEEecCCCCCCHHH--HHHHHHcCCCCCEEeccCCCCCCh
Q psy9589          92 LTDAS-LIVLAQRCHQLHTLEVASCSQFTDTG--FQALARNCRLLAKMDLEECVLITD  146 (163)
Q Consensus        92 ~~~~~-~~~l~~~~~~L~~L~l~~~~~i~~~~--~~~l~~~~~~L~~L~l~~~~~l~~  146 (163)
                      +++.. +..+. .+++|+.|++++++ ++...  -......+++|+.|+++.| ...+
T Consensus       100 i~~~~~~~~l~-~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n-~~~~  154 (176)
T 1a9n_A          100 LVELGDLDPLA-SLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV-KLKE  154 (176)
T ss_dssp             CCCGGGGGGGG-GCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC-CHHH
T ss_pred             CCcchhhHhhh-cCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC-CHHH
Confidence            54422 22333 79999999999964 44321  1223466899999999998 5444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.62  E-value=1e-09  Score=78.18  Aligned_cols=37  Identities=14%  Similarity=0.110  Sum_probs=16.1

Q ss_pred             hCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589         103 RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus       103 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .+++|+.|+++++ .++..... ....+++|++|++++|
T Consensus       155 ~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          155 KLTSLKELRLYNN-QLKRVPEG-AFDKLTELKTLKLDNN  191 (270)
T ss_dssp             TCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred             CCcccceeEecCC-cCcEeChh-HhccCCCcCEEECCCC
Confidence            4455555555543 23321111 1123455555555555

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.62  E-value=5.2e-10  Score=79.76  Aligned_cols=80  Identities=16%  Similarity=0.065  Sum_probs=42.9

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGC  156 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  156 (163)
                      .+++|++|+++++ .++......+ ..+++|++|+++++ .++.... .....+++|++|++++| .++.... ..+..+
T Consensus       107 ~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l  180 (270)
T 2o6q_A          107 QLVNLAELRLDRN-QLKSLPPRVF-DSLTKLTYLSLGYN-ELQSLPK-GVFDKLTSLKELRLYNN-QLKRVPE-GAFDKL  180 (270)
T ss_dssp             TCSSCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCT-TTTTTC
T ss_pred             cccCCCEEECCCC-ccCeeCHHHh-CcCcCCCEEECCCC-cCCccCH-hHccCCcccceeEecCC-cCcEeCh-hHhccC
Confidence            4667777777764 2332221122 25777888888774 3443221 12244678888888887 5443211 112345


Q ss_pred             CCCccC
Q psy9589         157 PRLEKL  162 (163)
Q Consensus       157 ~~L~~L  162 (163)
                      ++|+.|
T Consensus       181 ~~L~~L  186 (270)
T 2o6q_A          181 TELKTL  186 (270)
T ss_dssp             TTCCEE
T ss_pred             CCcCEE
Confidence            555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.62  E-value=1.2e-09  Score=76.15  Aligned_cols=35  Identities=20%  Similarity=0.062  Sum_probs=16.0

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      ++|++|++++|.. +...- .....+++|++|++++|
T Consensus        40 ~~L~~L~Ls~n~i-~~~~~-~~~~~l~~L~~L~L~~N   74 (229)
T 3e6j_A           40 TNAQILYLHDNQI-TKLEP-GVFDSLINLKELYLGSN   74 (229)
T ss_dssp             TTCSEEECCSSCC-CCCCT-TTTTTCTTCCEEECCSS
T ss_pred             CCCCEEEcCCCcc-CccCH-HHhhCccCCcEEECCCC
Confidence            4566666665432 11100 11233555666666555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.61  E-value=3.4e-09  Score=75.66  Aligned_cols=39  Identities=8%  Similarity=0.057  Sum_probs=28.6

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCCh
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD   56 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~   56 (163)
                      .+++|++|+++++.......    ...+++|++|++++| .++.
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~----l~~l~~L~~L~l~~n-~l~~   77 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQG----IQYLPNVRYLALGGN-KLHD   77 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTT----GGGCTTCCEEECTTS-CCCC
T ss_pred             cccceeeeeeCCCCcccccc----cccCCCCcEEECCCC-CCCC
Confidence            56899999999976433222    356999999999998 4443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.61  E-value=4.5e-09  Score=76.84  Aligned_cols=13  Identities=15%  Similarity=0.278  Sum_probs=6.5

Q ss_pred             hCCcCCEEEecCC
Q psy9589          39 RCHQLHTLEVASC   51 (163)
Q Consensus        39 ~~~~L~~L~l~~~   51 (163)
                      .+++|++|++++|
T Consensus       169 ~l~~L~~L~l~~n  181 (330)
T 1xku_A          169 GMKKLSYIRIADT  181 (330)
T ss_dssp             GCTTCCEEECCSS
T ss_pred             CCCCcCEEECCCC
Confidence            3455555555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.60  E-value=7.4e-10  Score=75.95  Aligned_cols=13  Identities=15%  Similarity=0.123  Sum_probs=6.8

Q ss_pred             hCCcCCEEEecCC
Q psy9589          39 RCHQLHTLEVASC   51 (163)
Q Consensus        39 ~~~~L~~L~l~~~   51 (163)
                      .+++|++|++++|
T Consensus        50 ~l~~L~~L~l~~n   62 (208)
T 2o6s_A           50 ELTSLTQLYLGGN   62 (208)
T ss_dssp             TCTTCSEEECCSS
T ss_pred             ccccCcEEECCCC
Confidence            3455555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.59  E-value=8e-09  Score=79.86  Aligned_cols=38  Identities=18%  Similarity=0.079  Sum_probs=18.9

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      ..+++|++|++++|.. ++.... ....+++|+.|++++|
T Consensus       321 ~~l~~L~~L~Ls~n~l-~~~~~~-~~~~l~~L~~L~L~~N  358 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLL-TDTVFE-NCGHLTELETLILQMN  358 (520)
T ss_dssp             SSCCCCCEEECCSSCC-CTTTTT-TCCCCSSCCEEECCSS
T ss_pred             hhCCcccEEEeECCcc-Chhhhh-hhccCCCCCEEEccCC
Confidence            3566666666666542 221111 1134566666666665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.59  E-value=5.8e-08  Score=74.24  Aligned_cols=74  Identities=23%  Similarity=0.215  Sum_probs=35.8

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGC  156 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  156 (163)
                      .+++|++|+++++. +++...   ...+++|+.|++++| .+++.  .. ...+++|+.|++++| .+++...   ...+
T Consensus       307 ~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n-~l~~~~~---~~~l  374 (466)
T 1o6v_A          307 NLKNLTYLTLYFNN-ISDISP---VSSLTKLQRLFFYNN-KVSDV--SS-LANLTNINWLSAGHN-QISDLTP---LANL  374 (466)
T ss_dssp             GCTTCSEEECCSSC-CSCCGG---GGGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS-CCCBCGG---GTTC
T ss_pred             CCCCCCEEECcCCc-CCCchh---hccCccCCEeECCCC-ccCCc--hh-hccCCCCCEEeCCCC-ccCccch---hhcC
Confidence            45556666665542 322211   125566666666654 34332  11 233566666666666 4444221   3455


Q ss_pred             CCCccC
Q psy9589         157 PRLEKL  162 (163)
Q Consensus       157 ~~L~~L  162 (163)
                      ++|+.|
T Consensus       375 ~~L~~L  380 (466)
T 1o6v_A          375 TRITQL  380 (466)
T ss_dssp             TTCCEE
T ss_pred             CCCCEE
Confidence            555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.59  E-value=8.8e-08  Score=73.24  Aligned_cols=74  Identities=16%  Similarity=0.092  Sum_probs=39.5

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGC  156 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  156 (163)
                      .+++|++|+++++. +.+..  . ...+++|+.|++++| .+++...   ...+++|++|++++| .++..  . -...+
T Consensus       285 ~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~-~l~~l  352 (466)
T 1o6v_A          285 GLTALTNLELNENQ-LEDIS--P-ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDV--S-SLANL  352 (466)
T ss_dssp             TCTTCSEEECCSSC-CSCCG--G-GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCC--G-GGTTC
T ss_pred             CCCccCeEEcCCCc-ccCch--h-hcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCc--h-hhccC
Confidence            45666666666642 32211  1 235677777777664 3443221   245677777777776 55442  1 23456


Q ss_pred             CCCccC
Q psy9589         157 PRLEKL  162 (163)
Q Consensus       157 ~~L~~L  162 (163)
                      ++|+.|
T Consensus       353 ~~L~~L  358 (466)
T 1o6v_A          353 TNINWL  358 (466)
T ss_dssp             TTCCEE
T ss_pred             CCCCEE
Confidence            666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.58  E-value=1.2e-09  Score=79.59  Aligned_cols=77  Identities=17%  Similarity=0.063  Sum_probs=46.9

Q ss_pred             CCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCC
Q psy9589          78 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCP  157 (163)
Q Consensus        78 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  157 (163)
                      +++|++|+++++ .++.....  ...+++|+.|+++++ .++.-  ......+++|+.|++++| .++...+..+...++
T Consensus       190 l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l--~~~~~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~  262 (317)
T 3o53_A          190 FAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLI--EKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQ  262 (317)
T ss_dssp             CTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEE--CTTCCCCTTCCEEECTTC-CCBHHHHHHHHHTCH
T ss_pred             cccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cccch--hhHhhcCCCCCEEEccCC-CccCcCHHHHHhccc
Confidence            567888888774 34432111  236788888888874 45531  112245688888888887 666445555555666


Q ss_pred             CCcc
Q psy9589         158 RLEK  161 (163)
Q Consensus       158 ~L~~  161 (163)
                      +|+.
T Consensus       263 ~L~~  266 (317)
T 3o53_A          263 RVQT  266 (317)
T ss_dssp             HHHH
T ss_pred             cceE
Confidence            5544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.58  E-value=6.1e-10  Score=77.26  Aligned_cols=61  Identities=15%  Similarity=0.049  Sum_probs=28.9

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .+++|++|+++++ .++......+. .+++|+.|+++++ .++..... ....+++|++|++++|
T Consensus       103 ~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          103 GLESLKTLMLRSN-RITCVGNDSFI-GLSSVRLLSLYDN-QITTVAPG-AFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             TCSSCCEEECTTS-CCCCBCTTSST-TCTTCSEEECTTS-CCCCBCTT-TTTTCTTCCEEECCSC
T ss_pred             CCcCCCEEECCCC-cCCeECHhHcC-CCccCCEEECCCC-cCCEECHH-HhcCCCCCCEEEecCc
Confidence            4556666666653 23322111222 4566666666653 34332111 1233566666666665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.56  E-value=1.9e-09  Score=82.55  Aligned_cols=37  Identities=22%  Similarity=0.139  Sum_probs=18.3

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      .+++|++|++++|. ++...- .....+++|++|++++|
T Consensus        54 ~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           54 SFPHLEELELNENI-VSAVEP-GAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCc-cCEeCh-hhhhCCccCCEEECCCC
Confidence            45666666666643 222111 11234566666666665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.55  E-value=2.9e-10  Score=82.34  Aligned_cols=61  Identities=23%  Similarity=0.244  Sum_probs=25.3

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .+++|++|+++++ .+++.....+. .+++|+.|+++++ .++...... ...+++|++|++++|
T Consensus       173 ~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          173 ELRNLTFLDLSQC-QLEQLSPTAFN-SLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLN  233 (306)
T ss_dssp             TCTTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTS
T ss_pred             hCcCCCEEECCCC-CcCCcCHHHhc-CCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCC
Confidence            3445555555543 23222111122 4455555555553 233211111 123455666666655

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.55  E-value=1e-08  Score=77.95  Aligned_cols=116  Identities=18%  Similarity=0.114  Sum_probs=75.1

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|++|++++|....... ......+++|++|++++| .++......             ...+++|++|+++++ .
T Consensus        51 ~~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-------------~~~l~~L~~L~L~~n-~  114 (455)
T 3v47_A           51 SRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYN-QFLQLETGA-------------FNGLANLEVLTLTQC-N  114 (455)
T ss_dssp             SSCTTCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECTTC-TTCEECTTT-------------TTTCTTCCEEECTTS-C
T ss_pred             ccCccccEEECcCCcccceEC-cccccccccCCEEeCCCC-ccCccChhh-------------ccCcccCCEEeCCCC-C
Confidence            468999999999975421211 112345899999999997 444321111             125789999999986 4


Q ss_pred             CCHHHHHH-HHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589          92 LTDASLIV-LAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT  145 (163)
Q Consensus        92 ~~~~~~~~-l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  145 (163)
                      +++..... ....+++|++|+++++ .++......+...+++|++|++++| .++
T Consensus       115 l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~l~  167 (455)
T 3v47_A          115 LDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN-KVK  167 (455)
T ss_dssp             CBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC-CBS
T ss_pred             CCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC-ccc
Confidence            55443332 2337899999999885 4554322233456789999999987 444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.54  E-value=1.3e-09  Score=76.93  Aligned_cols=38  Identities=16%  Similarity=0.020  Sum_probs=26.1

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCC
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFT   55 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~   55 (163)
                      ++|++|+++++.. +...- .....+++|++|++++| .++
T Consensus        35 ~~l~~L~L~~n~l-~~~~~-~~~~~l~~L~~L~L~~n-~l~   72 (251)
T 3m19_A           35 ADTEKLDLQSTGL-ATLSD-ATFRGLTKLTWLNLDYN-QLQ   72 (251)
T ss_dssp             TTCCEEECTTSCC-CCCCT-TTTTTCTTCCEEECTTS-CCC
T ss_pred             CCCCEEEccCCCc-CccCH-hHhcCcccCCEEECCCC-cCC
Confidence            5799999999763 22111 12346899999999997 444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.54  E-value=8.9e-10  Score=76.42  Aligned_cols=12  Identities=8%  Similarity=0.376  Sum_probs=6.3

Q ss_pred             CCcCCEEEecCC
Q psy9589          40 CHQLHTLEVASC   51 (163)
Q Consensus        40 ~~~L~~L~l~~~   51 (163)
                      +++|++|++++|
T Consensus        55 l~~L~~L~Ls~N   66 (220)
T 2v9t_B           55 YKKLRRIDLSNN   66 (220)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCCCCEEECCCC
Confidence            455555555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.53  E-value=3.3e-09  Score=78.29  Aligned_cols=38  Identities=18%  Similarity=-0.006  Sum_probs=27.4

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      ..+++|++|++++|.. +.... .....+++|++|++++|
T Consensus        97 ~~l~~L~~L~Ls~n~l-~~~~~-~~~~~l~~L~~L~L~~n  134 (353)
T 2z80_A           97 SSLGSLEHLDLSYNYL-SNLSS-SWFKPLSSLTFLNLLGN  134 (353)
T ss_dssp             TTCTTCCEEECCSSCC-SSCCH-HHHTTCTTCSEEECTTC
T ss_pred             CCCCCCCEEECCCCcC-CcCCH-hHhCCCccCCEEECCCC
Confidence            4578999999998753 33221 23456899999999987

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.53  E-value=1.8e-09  Score=82.08  Aligned_cols=37  Identities=22%  Similarity=0.137  Sum_probs=18.1

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      .+++|++|++++|. ++.... .....+++|++|++++|
T Consensus        86 ~l~~L~~L~Ls~n~-i~~i~~-~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           86 HLRHLEILQLSRNH-IRTIEI-GAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCSSCCEEECCSSC-CCEECG-GGGTTCSSCCEEECCSS
T ss_pred             CCCCCCEEECCCCc-CCccCh-hhccCCccCCEEECCCC
Confidence            45666666666643 222111 11233566666666665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.53  E-value=2e-09  Score=82.01  Aligned_cols=39  Identities=15%  Similarity=0.099  Sum_probs=19.7

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQ   53 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~   53 (163)
                      .+++|++|++++|.. +...- .....+++|++|++++|..
T Consensus       145 ~l~~L~~L~L~~N~l-~~~~~-~~~~~l~~L~~L~l~~~~~  183 (452)
T 3zyi_A          145 YLSKLRELWLRNNPI-ESIPS-YAFNRVPSLMRLDLGELKK  183 (452)
T ss_dssp             SCTTCCEEECCSCCC-CEECT-TTTTTCTTCCEEECCCCTT
T ss_pred             ccCCCCEEECCCCCc-ceeCH-hHHhcCCcccEEeCCCCCC
Confidence            467777777777542 21110 1123355666666655433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.53  E-value=4.2e-09  Score=77.21  Aligned_cols=63  Identities=27%  Similarity=0.396  Sum_probs=34.9

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVL  143 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~  143 (163)
                      .+++|++|+++++..... ....+ ..+++|+.|++++|....... .. ...+++|++|++++|..
T Consensus       227 ~l~~L~~L~Ls~n~~~~~-~p~~~-~~l~~L~~L~L~~n~~~~~~p-~~-~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          227 HLPKLEELDLRGCTALRN-YPPIF-GGRAPLKRLILKDCSNLLTLP-LD-IHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             GCTTCCEEECTTCTTCCB-CCCCT-TCCCCCCEEECTTCTTCCBCC-TT-GGGCTTCCEEECTTCTT
T ss_pred             cCCCCCEEECcCCcchhh-hHHHh-cCCCCCCEEECCCCCchhhcc-hh-hhcCCCCCEEeCCCCCc
Confidence            567777777777542221 11112 256777777777754333211 11 24567788888887743

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.52  E-value=4.1e-09  Score=72.19  Aligned_cols=111  Identities=16%  Similarity=0.097  Sum_probs=73.2

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|++|++++|.. +.... .....+++|++|++++| .++.....             .+..+++|++|+++++ .
T Consensus        49 ~~l~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~-------------~~~~l~~L~~L~L~~N-~  111 (208)
T 2o6s_A           49 DELTSLTQLYLGGNKL-QSLPN-GVFNKLTSLTYLNLSTN-QLQSLPNG-------------VFDKLTQLKELALNTN-Q  111 (208)
T ss_dssp             TTCTTCSEEECCSSCC-CCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-------------TTTTCTTCCEEECCSS-C
T ss_pred             cccccCcEEECCCCcc-CccCh-hhcCCCCCcCEEECCCC-cCCccCHh-------------HhcCccCCCEEEcCCC-c
Confidence            4679999999998653 32111 12346899999999998 44422110             1236789999999985 4


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV  142 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  142 (163)
                      ++..... ....+++|+.|+++++ .++.... .....+++|++|++++|+
T Consensus       112 l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          112 LQSLPDG-VFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CCCCCTT-TTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred             CcccCHh-HhccCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCCC
Confidence            5432222 2237899999999985 4654221 223557999999999983

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.52  E-value=4.8e-09  Score=76.94  Aligned_cols=12  Identities=25%  Similarity=0.545  Sum_probs=6.8

Q ss_pred             CCCCCEEeccCC
Q psy9589         130 CRLLAKMDLEEC  141 (163)
Q Consensus       130 ~~~L~~L~l~~~  141 (163)
                      +++|++|++++|
T Consensus       252 l~~L~~L~L~~n  263 (328)
T 4fcg_A          252 RAPLKRLILKDC  263 (328)
T ss_dssp             CCCCCEEECTTC
T ss_pred             CCCCCEEECCCC
Confidence            455555555555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.52  E-value=1.3e-09  Score=85.01  Aligned_cols=62  Identities=18%  Similarity=0.143  Sum_probs=27.7

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .+++|++|+++++ .+.......+ ..+++|++|+++++ .++...+.....++++|++|++++|
T Consensus        98 ~l~~L~~L~L~~n-~l~~l~~~~~-~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A           98 GLSSLQKLVAVET-NLASLENFPI-GHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             TCTTCCEEECTTS-CCCCSTTCSC-TTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred             Ccccccccccccc-ccccCCCccc-cccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCC
Confidence            3455556655553 2222111112 24566666666653 2332111111233566666666665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.51  E-value=1.9e-09  Score=81.87  Aligned_cols=38  Identities=16%  Similarity=0.093  Sum_probs=18.0

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS   52 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~   52 (163)
                      .+++|++|++++|.. +...- .....+++|++|++++|.
T Consensus       134 ~l~~L~~L~L~~N~i-~~~~~-~~~~~l~~L~~L~l~~~~  171 (440)
T 3zyj_A          134 YLSKLKELWLRNNPI-ESIPS-YAFNRIPSLRRLDLGELK  171 (440)
T ss_dssp             SCSSCCEEECCSCCC-CEECT-TTTTTCTTCCEEECCCCT
T ss_pred             ccccCceeeCCCCcc-cccCH-HHhhhCcccCEeCCCCCC
Confidence            456677777766542 21110 112235555555555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.50  E-value=1.1e-08  Score=78.98  Aligned_cols=126  Identities=13%  Similarity=0.113  Sum_probs=55.0

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCCh-HHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD-TGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      .+++|++|++++|....-..+......+++|++|++++| .++. ....             .+..+++|++|+++++ .
T Consensus       346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~-------------~~~~l~~L~~L~Ls~N-~  410 (520)
T 2z7x_B          346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKG-------------DCSWTKSLLSLNMSSN-I  410 (520)
T ss_dssp             CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGC-------------SCCCCTTCCEEECCSS-C
T ss_pred             cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccc-------------hhccCccCCEEECcCC-C
Confidence            455566666655443221223233344566666666555 2221 1000             0113455666666553 2


Q ss_pred             CCHHHHHHHHHhC-CCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          92 LTDASLIVLAQRC-HQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        92 ~~~~~~~~l~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      +++...    ..+ ++|+.|++++| .++.-. ..+ ..+++|++|++++| .++.-.. ..+..+++|+.|
T Consensus       411 l~~~~~----~~l~~~L~~L~Ls~N-~l~~ip-~~~-~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L  473 (520)
T 2z7x_B          411 LTDTIF----RCLPPRIKVLDLHSN-KIKSIP-KQV-VKLEALQELNVASN-QLKSVPD-GIFDRLTSLQKI  473 (520)
T ss_dssp             CCGGGG----GSCCTTCCEEECCSS-CCCCCC-GGG-GGCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEE
T ss_pred             CCcchh----hhhcccCCEEECCCC-cccccc-hhh-hcCCCCCEEECCCC-cCCccCH-HHhccCCcccEE
Confidence            332111    122 46666666653 344111 111 24566667777666 4442111 123345555544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.50  E-value=1.3e-09  Score=85.66  Aligned_cols=62  Identities=19%  Similarity=0.126  Sum_probs=27.0

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .+++|++|+++++. +.......+ ..+++|++|+++++ .++...+.....++++|++|++++|
T Consensus       102 ~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A          102 GLTSLENLVAVETK-LASLESFPI-GQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             TCTTCCEEECTTSC-CCCSSSSCC-TTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             CcccCCEEEccCCc-ccccccccc-CCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCC
Confidence            34555555555532 221111112 24556666666553 2332111112234566666666665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.50  E-value=4.4e-08  Score=69.65  Aligned_cols=119  Identities=13%  Similarity=0.085  Sum_probs=82.7

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|++|++++|.. ++..   -...+++|++|++++| .++....               ...+++|++|+++++ .
T Consensus        38 ~~l~~L~~L~l~~n~i-~~l~---~l~~l~~L~~L~L~~N-~i~~~~~---------------l~~l~~L~~L~L~~N-~   96 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNI-QSLA---GMQFFTNLKELHLSHN-QISDLSP---------------LKDLTKLEELSVNRN-R   96 (263)
T ss_dssp             HHHTTCSEEECTTSCC-CCCT---TGGGCTTCCEEECCSS-CCCCCGG---------------GTTCSSCCEEECCSS-C
T ss_pred             hhcCcCcEEECcCCCc-ccch---HHhhCCCCCEEECCCC-ccCCChh---------------hccCCCCCEEECCCC-c
Confidence            3578999999999753 3322   2356899999999998 4544321               236899999999996 3


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI  163 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~  163 (163)
                      +++.  ..+. . ++|+.|+++++ .+++-.  . ...+++|+.|++++| .+++..   ....+++|+.|+
T Consensus        97 l~~l--~~~~-~-~~L~~L~L~~N-~l~~~~--~-l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~L~~L~  156 (263)
T 1xeu_A           97 LKNL--NGIP-S-ACLSRLFLDNN-ELRDTD--S-LIHLKNLEILSIRNN-KLKSIV---MLGFLSKLEVLD  156 (263)
T ss_dssp             CSCC--TTCC-C-SSCCEEECCSS-CCSBSG--G-GTTCTTCCEEECTTS-CCCBCG---GGGGCTTCCEEE
T ss_pred             cCCc--Cccc-c-CcccEEEccCC-ccCCCh--h-hcCcccccEEECCCC-cCCCCh---HHccCCCCCEEE
Confidence            4431  2222 2 89999999985 566532  2 346899999999998 777632   345778887653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.49  E-value=2.5e-09  Score=81.54  Aligned_cols=31  Identities=16%  Similarity=0.129  Sum_probs=14.2

Q ss_pred             CCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589         130 CRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus       130 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      +++|+.|++++| .++.... ..+..+++|+.|
T Consensus       217 l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L  247 (452)
T 3zyi_A          217 LVGLEELEMSGN-HFPEIRP-GSFHGLSSLKKL  247 (452)
T ss_dssp             CTTCCEEECTTS-CCSEECG-GGGTTCTTCCEE
T ss_pred             cccccEEECcCC-cCcccCc-ccccCccCCCEE
Confidence            455666666665 4433111 123355555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.48  E-value=4.5e-09  Score=78.53  Aligned_cols=65  Identities=18%  Similarity=0.186  Sum_probs=31.6

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCCh
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITD  146 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~  146 (163)
                      .+++|++|+++++ .++... ..+...+++|++|+++++ .++..... ....+++|++|++++| .++.
T Consensus       115 ~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~  179 (390)
T 3o6n_A          115 NVPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSN-RLTH  179 (390)
T ss_dssp             TCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCBCCTT-TTSSCTTCCEEECCSS-CCSB
T ss_pred             CCCCCCEEECCCC-ccCcCC-HHHhcCCCCCcEEECCCC-ccCccChh-hccCCCCCCEEECCCC-cCCc
Confidence            4566666666664 233111 111225666666666663 33322111 1233566677777665 4443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.48  E-value=1.7e-08  Score=79.27  Aligned_cols=114  Identities=19%  Similarity=0.141  Sum_probs=75.7

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|++|+|++|.. +...- .....+++|++|++++| .++.....             .+..+++|++|+++++ .
T Consensus        73 ~~l~~L~~L~Ls~N~i-~~i~~-~~f~~L~~L~~L~Ls~N-~l~~l~~~-------------~f~~L~~L~~L~Ls~N-~  135 (635)
T 4g8a_A           73 FSFPELQVLDLSRCEI-QTIED-GAYQSLSHLSTLILTGN-PIQSLALG-------------AFSGLSSLQKLVAVET-N  135 (635)
T ss_dssp             TTCTTCCEEECTTCCC-CEECT-TTTTTCTTCCEEECTTC-CCCEECGG-------------GGTTCTTCCEEECTTS-C
T ss_pred             hCCCCCCEEECCCCcC-CCcCh-hHhcCCCCCCEEEccCC-cCCCCCHH-------------HhcCCCCCCEEECCCC-c
Confidence            4689999999999753 32111 12356899999999998 45432111             2236889999999986 3


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT  145 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  145 (163)
                      ++......+ ..+++|++|+++++ .++...+......++.|++|++++| .++
T Consensus       136 l~~l~~~~~-~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~  186 (635)
T 4g8a_A          136 LASLENFPI-GHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQ  186 (635)
T ss_dssp             CCCSTTCCC-TTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCC
T ss_pred             CCCCChhhh-hcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc-ccc
Confidence            443221122 37899999999985 4543322234456789999999998 554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.48  E-value=4.1e-09  Score=78.77  Aligned_cols=128  Identities=12%  Similarity=0.098  Sum_probs=83.9

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL   92 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   92 (163)
                      .+++++.|+++++. ++...- .+...+++|++|++++| .++......             ...+++|++|+++++ .+
T Consensus        43 ~l~~l~~l~l~~~~-l~~l~~-~~~~~l~~L~~L~L~~n-~i~~~~~~~-------------~~~l~~L~~L~L~~n-~l  105 (390)
T 3o6n_A           43 TLNNQKIVTFKNST-MRKLPA-ALLDSFRQVELLNLNDL-QIEEIDTYA-------------FAYAHTIQKLYMGFN-AI  105 (390)
T ss_dssp             GGCCCSEEEEESCE-ESEECT-HHHHHCCCCSEEECTTS-CCCEECTTT-------------TTTCTTCCEEECCSS-CC
T ss_pred             ccCCceEEEecCCc-hhhCCh-hHhcccccCcEEECCCC-cccccChhh-------------ccCCCCcCEEECCCC-CC
Confidence            46899999999864 333221 34466999999999997 454322111             126789999999986 35


Q ss_pred             CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      +......+ ..+++|++|+++++ .++.-. ..+...+++|++|++++| .++.... ..+..+++|+.|
T Consensus       106 ~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L  170 (390)
T 3o6n_A          106 RYLPPHVF-QNVPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNN-NLERIED-DTFQATTSLQNL  170 (390)
T ss_dssp             CCCCTTTT-TTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCBCCT-TTTSSCTTCCEE
T ss_pred             CcCCHHHh-cCCCCCCEEECCCC-ccCcCC-HHHhcCCCCCcEEECCCC-ccCccCh-hhccCCCCCCEE
Confidence            44322233 37899999999985 465322 122355899999999998 6654211 223566777765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.46  E-value=4.9e-09  Score=82.43  Aligned_cols=126  Identities=16%  Similarity=0.079  Sum_probs=64.8

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL   92 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   92 (163)
                      .+++|++|++++|.. ....- .....+++|++|++++| .++.....             ....+++|++|+++++ .+
T Consensus        55 ~l~~L~~L~Ls~n~i-~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~-------------~~~~l~~L~~L~L~~n-~i  117 (606)
T 3t6q_A           55 RLINLTFLDLTRCQI-YWIHE-DTFQSQHRLDTLVLTAN-PLIFMAET-------------ALSGPKALKHLFFIQT-GI  117 (606)
T ss_dssp             TCTTCSEEECTTCCC-CEECT-TTTTTCTTCCEEECTTC-CCSEECTT-------------TTSSCTTCCEEECTTS-CC
T ss_pred             cCccceEEECCCCcc-ceeCh-hhccCccccCeeeCCCC-cccccChh-------------hhcccccccEeecccc-Cc
Confidence            466777777766542 22110 11234677777777766 33221100             1125677777777774 34


Q ss_pred             CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCc
Q psy9589          93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLE  160 (163)
Q Consensus        93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~  160 (163)
                      +......+. .+++|++|+++++ .++......+.. +++|++|++++| .++...... +..+++|+
T Consensus       118 ~~l~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~-l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~  180 (606)
T 3t6q_A          118 SSIDFIPLH-NQKTLESLYLGSN-HISSIKLPKGFP-TEKLKVLDFQNN-AIHYLSKED-MSSLQQAT  180 (606)
T ss_dssp             SCGGGSCCT-TCTTCCEEECCSS-CCCCCCCCTTCC-CTTCCEEECCSS-CCCEECHHH-HHTTTTCC
T ss_pred             ccCCcchhc-cCCcccEEECCCC-cccccCcccccC-CcccCEEEcccC-cccccChhh-hhhhcccc
Confidence            432222232 6777888888774 344322122222 677888888887 555322222 23555555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.46  E-value=1.7e-08  Score=79.32  Aligned_cols=123  Identities=15%  Similarity=0.148  Sum_probs=84.4

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTD   94 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   94 (163)
                      ..|++|++++|.. +.  +.. ...+++|+.|++++| .++...              .....+++|+.|+++++ .++.
T Consensus       441 ~~L~~L~Ls~n~l-~~--lp~-~~~l~~L~~L~Ls~N-~l~~lp--------------~~~~~l~~L~~L~Ls~N-~l~~  500 (567)
T 1dce_A          441 ADVRVLHLAHKDL-TV--LCH-LEQLLLVTHLDLSHN-RLRALP--------------PALAALRCLEVLQASDN-ALEN  500 (567)
T ss_dssp             TTCSEEECTTSCC-SS--CCC-GGGGTTCCEEECCSS-CCCCCC--------------GGGGGCTTCCEEECCSS-CCCC
T ss_pred             cCceEEEecCCCC-CC--CcC-ccccccCcEeecCcc-cccccc--------------hhhhcCCCCCEEECCCC-CCCC
Confidence            4699999999753 33  122 456899999999998 444210              01236899999999995 4554


Q ss_pred             HHHHHHHHhCCCCCEEEecCCCCCCHHH-HHHHHHcCCCCCEEeccCCCCCChH--HHHHHHhCCCCCccCC
Q psy9589          95 ASLIVLAQRCHQLHTLEVASCSQFTDTG-FQALARNCRLLAKMDLEECVLITDA--TLIHLALGCPRLEKLI  163 (163)
Q Consensus        95 ~~~~~l~~~~~~L~~L~l~~~~~i~~~~-~~~l~~~~~~L~~L~l~~~~~l~~~--~~~~l~~~~~~L~~L~  163 (163)
                        +..+. .+++|+.|+++++ .++... ... ...+++|+.|++++| .++..  ....+...+|+|+.||
T Consensus       501 --lp~l~-~l~~L~~L~Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          501 --VDGVA-NLPRLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             --CGGGT-TCSSCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             --CcccC-CCCCCcEEECCCC-CCCCCCCcHH-HhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence              23343 7999999999985 566432 222 345899999999998 66542  2345566788888774

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.46  E-value=7.6e-09  Score=73.79  Aligned_cols=61  Identities=13%  Similarity=0.170  Sum_probs=25.7

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .+++|++|+++++ .++......+. .+++|++|+++++ .++...... ...+++|++|++++|
T Consensus        74 ~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n  134 (276)
T 2z62_A           74 SLSHLSTLILTGN-PIQSLALGAFS-GLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN  134 (276)
T ss_dssp             TCTTCCEEECTTC-CCCEECTTTTT-TCTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS
T ss_pred             CCcCCCEEECCCC-ccCccChhhhc-CCccccEEECCCC-CccccCchh-cccCCCCCEEECcCC
Confidence            3455555555553 23222111222 4555555555553 222211001 123455555555555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.46  E-value=9.4e-09  Score=83.24  Aligned_cols=55  Identities=24%  Similarity=0.393  Sum_probs=24.6

Q ss_pred             hCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589         103 RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus       103 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      .+++|++|++++|. ++... .. ...+++|++|++++| .++.... ..+..+++|+.|
T Consensus       198 ~l~~L~~L~Ls~n~-l~~~~-~~-l~~l~~L~~L~Ls~n-~l~~~~~-~~l~~l~~L~~L  252 (768)
T 3rgz_A          198 RCVNLEFLDVSSNN-FSTGI-PF-LGDCSALQHLDISGN-KLSGDFS-RAISTCTELKLL  252 (768)
T ss_dssp             TCTTCCEEECCSSC-CCSCC-CB-CTTCCSCCEEECCSS-CCCSCHH-HHTTTCSSCCEE
T ss_pred             cCCcCCEEECcCCc-CCCCC-cc-cccCCCCCEEECcCC-cCCCccc-HHHhcCCCCCEE
Confidence            45555555555532 22211 11 233556666666665 4443222 223455555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.44  E-value=1e-09  Score=89.67  Aligned_cols=63  Identities=21%  Similarity=0.203  Sum_probs=32.2

Q ss_pred             cCCCCceEecCCCCCCCHHHHHH-HHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIV-LAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .+++|++|+++++ .+++..... ....+++|+.|+++++ .++.........++++|++|++++|
T Consensus        95 ~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A           95 GLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             SCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             CCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC
Confidence            4566777777664 233211111 1225667777777664 3333221112244677777777776

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.43  E-value=4.2e-09  Score=76.00  Aligned_cols=13  Identities=23%  Similarity=0.146  Sum_probs=6.7

Q ss_pred             cCCCCcEEeecCC
Q psy9589          13 NCPNLYYLCLSGC   25 (163)
Q Consensus        13 ~~~~L~~L~l~~~   25 (163)
                      .+++|++|++++|
T Consensus        53 ~l~~L~~L~L~~n   65 (290)
T 1p9a_G           53 PYTRLTQLNLDRA   65 (290)
T ss_dssp             TCTTCCEEECTTS
T ss_pred             cCCCCCEEECCCC
Confidence            3455555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.43  E-value=1.6e-08  Score=70.09  Aligned_cols=111  Identities=17%  Similarity=0.111  Sum_probs=73.9

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|++|++++|.. +...- .....+++|++|++++| .++....             .++..+++|+.|+++++ .
T Consensus        53 ~~l~~L~~L~Ls~N~i-~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~~-------------~~f~~l~~L~~L~L~~N-~  115 (220)
T 2v9t_B           53 SPYKKLRRIDLSNNQI-SELAP-DAFQGLRSLNSLVLYGN-KITELPK-------------SLFEGLFSLQLLLLNAN-K  115 (220)
T ss_dssp             TTCTTCCEEECCSSCC-CEECT-TTTTTCSSCCEEECCSS-CCCCCCT-------------TTTTTCTTCCEEECCSS-C
T ss_pred             hCCCCCCEEECCCCcC-CCcCH-HHhhCCcCCCEEECCCC-cCCccCH-------------hHccCCCCCCEEECCCC-C
Confidence            3578999999998753 32111 12345899999999998 4442110             11236789999999985 4


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV  142 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  142 (163)
                      ++......+. .+++|+.|+++++ .++..... ....+++|++|++++|+
T Consensus       116 l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          116 INCLRVDAFQ-DLHNLNLLSLYDN-KLQTIAKG-TFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCCCCTTTTT-TCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred             CCEeCHHHcC-CCCCCCEEECCCC-cCCEECHH-HHhCCCCCCEEEeCCCC
Confidence            5543333333 7899999999985 45543322 23457899999999984

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.43  E-value=4.9e-08  Score=80.11  Aligned_cols=115  Identities=11%  Similarity=0.104  Sum_probs=62.7

Q ss_pred             hcCCCCcEEeecCCCCCChH----------------HHHHH--HHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHH
Q psy9589          12 ENCPNLYYLCLSGCSQLTDA----------------SLIVL--AQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLS   73 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~----------------~l~~i--~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~   73 (163)
                      ..+++|++|+|++|.. +..                .+..-  ...+++|++|++++|....... .             
T Consensus       445 ~~L~~L~~L~Ls~N~L-sg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~-------------  509 (876)
T 4ecn_A          445 QRLTKLQIIYFANSPF-TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-D-------------  509 (876)
T ss_dssp             GGCTTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-G-------------
T ss_pred             hcCCCCCEEECcCCcC-CCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-H-------------
Confidence            4578888888888663 331                11111  1257888888888874222110 0             


Q ss_pred             HHhcCCCCceEecCCCCCCCH-HHHHHHH------HhCCCCCEEEecCCCCCCHHHHHH--HHHcCCCCCEEeccCCCCC
Q psy9589          74 LAENCPNLYYLCLSGCSQLTD-ASLIVLA------QRCHQLHTLEVASCSQFTDTGFQA--LARNCRLLAKMDLEECVLI  144 (163)
Q Consensus        74 ~~~~~~~L~~L~l~~~~~~~~-~~~~~l~------~~~~~L~~L~l~~~~~i~~~~~~~--l~~~~~~L~~L~l~~~~~l  144 (163)
                      ....+++|++|+++++..++. .....+.      ..+|+|+.|+++++ .++.  +..  ....+++|+.|++++| .+
T Consensus       510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~--ip~~~~l~~L~~L~~L~Ls~N-~l  585 (876)
T 4ecn_A          510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEE--FPASASLQKMVKLGLLDCVHN-KV  585 (876)
T ss_dssp             GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCB--CCCHHHHTTCTTCCEEECTTS-CC
T ss_pred             HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCc--cCChhhhhcCCCCCEEECCCC-Cc
Confidence            112567777777777543554 2222222      23457777777764 3441  111  2344677777777776 44


Q ss_pred             C
Q psy9589         145 T  145 (163)
Q Consensus       145 ~  145 (163)
                      +
T Consensus       586 ~  586 (876)
T 4ecn_A          586 R  586 (876)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.43  E-value=2.9e-09  Score=77.64  Aligned_cols=43  Identities=26%  Similarity=0.186  Sum_probs=29.1

Q ss_pred             HHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589           7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus         7 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      ...+...+++|++|++++|.. +.... .....+++|++|++++|
T Consensus        26 ~~~~~~~~~~L~~L~L~~n~l-~~~~~-~~~~~l~~L~~L~Ls~n   68 (317)
T 3o53_A           26 LASLRQSAWNVKELDLSGNPL-SQISA-ADLAPFTKLELLNLSSN   68 (317)
T ss_dssp             HHHHHTTGGGCSEEECTTSCC-CCCCH-HHHTTCTTCCEEECTTS
T ss_pred             HHHHhccCCCCCEEECcCCcc-CcCCH-HHhhCCCcCCEEECCCC
Confidence            345556678999999988653 33222 22356888999999887

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.42  E-value=5e-09  Score=80.20  Aligned_cols=113  Identities=18%  Similarity=0.100  Sum_probs=64.7

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|++|++++|.. +.... .....+++|++|++++| .++.....             .+..+++|++|+++++ .
T Consensus        77 ~~l~~L~~L~L~~n~l-~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~-------------~~~~l~~L~~L~l~~n-~  139 (477)
T 2id5_A           77 NNLFNLRTLGLRSNRL-KLIPL-GVFTGLSNLTKLDISEN-KIVILLDY-------------MFQDLYNLKSLEVGDN-D  139 (477)
T ss_dssp             TTCTTCCEEECCSSCC-CSCCT-TSSTTCTTCCEEECTTS-CCCEECTT-------------TTTTCTTCCEEEECCT-T
T ss_pred             hCCccCCEEECCCCcC-CccCc-ccccCCCCCCEEECCCC-ccccCChh-------------HccccccCCEEECCCC-c
Confidence            4578999999988653 32111 12245788999999887 34322111             1125677888888774 3


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT  145 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  145 (163)
                      +.......+. .+++|+.|+++++ .++..... ....+++|+.|++++| .++
T Consensus       140 l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~L~~L~l~~n-~i~  189 (477)
T 2id5_A          140 LVYISHRAFS-GLNSLEQLTLEKC-NLTSIPTE-ALSHLHGLIVLRLRHL-NIN  189 (477)
T ss_dssp             CCEECTTSST-TCTTCCEEEEESC-CCSSCCHH-HHTTCTTCCEEEEESC-CCC
T ss_pred             cceeChhhcc-CCCCCCEEECCCC-cCcccChh-HhcccCCCcEEeCCCC-cCc
Confidence            3332222222 5777777877774 34433322 2344677777777776 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.42  E-value=3e-07  Score=71.41  Aligned_cols=12  Identities=17%  Similarity=0.432  Sum_probs=5.6

Q ss_pred             hCCCCCEEEecC
Q psy9589         103 RCHQLHTLEVAS  114 (163)
Q Consensus       103 ~~~~L~~L~l~~  114 (163)
                      .+++|++|++++
T Consensus       385 ~l~~L~~L~Ls~  396 (549)
T 2z81_A          385 TLKNLTSLDISR  396 (549)
T ss_dssp             GCTTCCEEECTT
T ss_pred             cCCCCCEEECCC
Confidence            344444444444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.41  E-value=3.8e-08  Score=80.76  Aligned_cols=117  Identities=15%  Similarity=0.156  Sum_probs=70.0

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCCh-HHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD-TGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      .+++|++|++++|.......  .....+++|++|++++|..++. ..-..+..      +......+|+|++|+++++ .
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP--~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~------L~~~~~~l~~L~~L~Ls~N-~  559 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLP--DFLYDLPELQSLNIACNRGISAAQLKADWTR------LADDEDTGPKIQIFYMGYN-N  559 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCC--GGGGGCSSCCEEECTTCTTSCHHHHHHHHHH------HHHCTTTTTTCCEEECCSS-C
T ss_pred             cCCCCCEEECcCCCCCccCh--HHHhCCCCCCEEECcCCCCcccccchHHHHh------hhhcccccCCccEEEeeCC-c
Confidence            68899999999976433222  2335689999999999853665 21111111      0001235678888888885 3


Q ss_pred             CCHHHHHH--HHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589          92 LTDASLIV--LAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT  145 (163)
Q Consensus        92 ~~~~~~~~--l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  145 (163)
                      ++  .+..  ....+++|+.|+++++ .++  .+. ....+++|+.|++++| .++
T Consensus       560 L~--~ip~~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N-~l~  608 (876)
T 4ecn_A          560 LE--EFPASASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYN-QIE  608 (876)
T ss_dssp             CC--BCCCHHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSS-CCS
T ss_pred             CC--ccCChhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCC-ccc
Confidence            44  2222  2337788888888774 354  222 2234677777777776 444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.41  E-value=2.8e-09  Score=79.07  Aligned_cols=114  Identities=18%  Similarity=0.090  Sum_probs=58.6

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL   92 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   92 (163)
                      .+++|++|+|++|.. +...- .....+++|++|++++| .++....             ..+..+++|+.|+++++ .+
T Consensus        62 ~l~~L~~L~L~~N~i-~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~~-------------~~~~~l~~L~~L~L~~N-~i  124 (361)
T 2xot_A           62 RLTNLHSLLLSHNHL-NFISS-EAFVPVPNLRYLDLSSN-HLHTLDE-------------FLFSDLQALEVLLLYNN-HI  124 (361)
T ss_dssp             CCTTCCEEECCSSCC-CEECT-TTTTTCTTCCEEECCSS-CCCEECT-------------TTTTTCTTCCEEECCSS-CC
T ss_pred             cccccCEEECCCCcC-CccCh-hhccCCCCCCEEECCCC-cCCcCCH-------------HHhCCCcCCCEEECCCC-cc
Confidence            456677777766542 22111 11234667777777765 3332110             01225677777777774 34


Q ss_pred             CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHH--HHcCCCCCEEeccCCCCCCh
Q psy9589          93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL--ARNCRLLAKMDLEECVLITD  146 (163)
Q Consensus        93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l--~~~~~~L~~L~l~~~~~l~~  146 (163)
                      .......+ ..+++|+.|+++++ .++.-....+  ...+++|+.|++++| .++.
T Consensus       125 ~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~  177 (361)
T 2xot_A          125 VVVDRNAF-EDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKK  177 (361)
T ss_dssp             CEECTTTT-TTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCC
T ss_pred             cEECHHHh-CCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCc
Confidence            43222222 25777888888774 3443221111  134678888888887 5554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.41  E-value=2.5e-09  Score=84.08  Aligned_cols=12  Identities=17%  Similarity=0.249  Sum_probs=7.0

Q ss_pred             CCCCCEEeccCC
Q psy9589         130 CRLLAKMDLEEC  141 (163)
Q Consensus       130 ~~~L~~L~l~~~  141 (163)
                      +++|++|++++|
T Consensus       448 l~~L~~L~L~~n  459 (606)
T 3t6q_A          448 LPALQHLNLQGN  459 (606)
T ss_dssp             CTTCCEEECTTC
T ss_pred             CCCCCEEECCCC
Confidence            455666666655

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.41  E-value=1.6e-08  Score=70.08  Aligned_cols=128  Identities=16%  Similarity=0.086  Sum_probs=81.5

Q ss_pred             CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589          14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT   93 (163)
Q Consensus        14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   93 (163)
                      .+.+++|++++|.. +...-..+...+++|++|++++| .++.....             .+..+++|++|+++++ .++
T Consensus        31 ~~~~~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~-------------~~~~l~~L~~L~Ls~N-~l~   94 (220)
T 2v70_A           31 PQYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNN-KITDIEEG-------------AFEGASGVNEILLTSN-RLE   94 (220)
T ss_dssp             CTTCSEEECCSSCC-CEECCCCCGGGCTTCCEEECCSS-CCCEECTT-------------TTTTCTTCCEEECCSS-CCC
T ss_pred             CCCCCEEEcCCCcC-CccCchhhhccCCCCCEEECCCC-cCCEECHH-------------HhCCCCCCCEEECCCC-ccC
Confidence            35789999999753 33211122356999999999997 45432111             1236789999999985 454


Q ss_pred             HHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          94 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        94 ~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      ......+ ..+++|++|+++++ .++......+ ..+++|+.|++++| .++.... ..+..+++|+.|
T Consensus        95 ~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L  158 (220)
T 2v70_A           95 NVQHKMF-KGLESLKTLMLRSN-RITCVGNDSF-IGLSSVRLLSLYDN-QITTVAP-GAFDTLHSLSTL  158 (220)
T ss_dssp             CCCGGGG-TTCSSCCEEECTTS-CCCCBCTTSS-TTCTTCSEEECTTS-CCCCBCT-TTTTTCTTCCEE
T ss_pred             ccCHhHh-cCCcCCCEEECCCC-cCCeECHhHc-CCCccCCEEECCCC-cCCEECH-HHhcCCCCCCEE
Confidence            3322223 37899999999985 4554321222 45789999999998 6654211 223466777655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.40  E-value=1.2e-08  Score=80.41  Aligned_cols=114  Identities=14%  Similarity=0.137  Sum_probs=59.1

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|++|++++|. ++..... ....+++|++|++++| .++.....             .+..+++|++|+++++ .
T Consensus        72 ~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~-------------~~~~l~~L~~L~L~~n-~  134 (597)
T 3oja_B           72 DSFRQVELLNLNDLQ-IEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPPH-------------VFQNVPLLTVLVLERN-D  134 (597)
T ss_dssp             HHCCCCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSS-CCCCCCTT-------------TTTTCTTCCEEECCSS-C
T ss_pred             ccCCCCcEEECCCCC-CCCCChH-HhcCCCCCCEEECCCC-cCCCCCHH-------------HHcCCCCCCEEEeeCC-C
Confidence            346777777777654 2221111 1234677777777766 33321111             1125677777777774 3


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCCh
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITD  146 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~  146 (163)
                      ++.... .++..+++|++|++++| .++...... ...+++|++|++++| .++.
T Consensus       135 l~~l~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~  185 (597)
T 3oja_B          135 LSSLPR-GIFHNTPKLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSN-RLTH  185 (597)
T ss_dssp             CCCCCT-TTTTTCTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECTTS-CCSB
T ss_pred             CCCCCH-HHhccCCCCCEEEeeCC-cCCCCChhh-hhcCCcCcEEECcCC-CCCC
Confidence            432111 12235677777777764 344322111 234677777777776 5544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.40  E-value=1.7e-09  Score=85.11  Aligned_cols=12  Identities=17%  Similarity=0.011  Sum_probs=6.3

Q ss_pred             CCCCCEEeccCC
Q psy9589         130 CRLLAKMDLEEC  141 (163)
Q Consensus       130 ~~~L~~L~l~~~  141 (163)
                      +++|++|++++|
T Consensus       520 l~~L~~L~l~~N  531 (606)
T 3vq2_A          520 LYSLSTLDCSFN  531 (606)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCcCCEEECCCC
Confidence            445555555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.40  E-value=8.2e-09  Score=84.39  Aligned_cols=130  Identities=20%  Similarity=0.107  Sum_probs=56.8

Q ss_pred             CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589          14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT   93 (163)
Q Consensus        14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   93 (163)
                      .++|++|+|++|.. +...- .....+++|++|++++|..+......             .+..+++|++|+++++ .+.
T Consensus        23 p~~l~~LdLs~N~i-~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~-------------~f~~L~~L~~L~Ls~N-~l~   86 (844)
T 3j0a_A           23 LNTTERLLLSFNYI-RTVTA-SSFPFLEQLQLLELGSQYTPLTIDKE-------------AFRNLPNLRILDLGSS-KIY   86 (844)
T ss_dssp             CTTCCEEEEESCCC-CEECS-SSCSSCCSCSEEEECTTCCCCEECTT-------------TTSSCTTCCEEECTTC-CCC
T ss_pred             CCCcCEEECCCCcC-CccCh-hHCcccccCeEEeCCCCCCccccCHH-------------HhcCCCCCCEEECCCC-cCc
Confidence            35666666666442 22111 01134566666666665322111000             0124566666666654 233


Q ss_pred             HHHHHHHHHhCCCCCEEEecCCCCCCHHHHHH-HHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          94 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQA-LARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        94 ~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~-l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      ......+. .+++|++|++++| .+++..... ....+++|++|++++| .++.......+..+++|++|
T Consensus        87 ~~~p~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L  153 (844)
T 3j0a_A           87 FLHPDAFQ-GLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSI  153 (844)
T ss_dssp             EECTTSSC-SCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEE
T ss_pred             ccCHhHcc-CCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEE
Confidence            22222222 5566666666654 333211111 1233566666666665 43332111223455555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.39  E-value=9.2e-09  Score=83.31  Aligned_cols=39  Identities=26%  Similarity=0.275  Sum_probs=20.0

Q ss_pred             cCCCCcEEeecCCCCCChHHH-HHHHHhCCcCCEEEecCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASL-IVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l-~~i~~~~~~L~~L~l~~~   51 (163)
                      .+++|++|++++|........ ......+++|++|++++|
T Consensus       149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  188 (768)
T 3rgz_A          149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN  188 (768)
T ss_dssp             CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence            466777777777553222111 112344556666666555

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.39  E-value=1.6e-09  Score=78.46  Aligned_cols=64  Identities=16%  Similarity=0.137  Sum_probs=43.9

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcC-CCCCEEeccCCCCCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNC-RLLAKMDLEECVLIT  145 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~L~~L~l~~~~~l~  145 (163)
                      .+++|++|+++++. +++.....+ ..+++|+.|+++++ .++......+ ..+ ++|++|++++| .++
T Consensus       197 ~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~-~~~~~~L~~L~L~~N-~~~  261 (306)
T 2z66_A          197 SLSSLQVLNMSHNN-FFSLDTFPY-KCLNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQN-DFA  261 (306)
T ss_dssp             TCTTCCEEECTTSC-CSBCCSGGG-TTCTTCCEEECTTS-CCCBCSSSSC-CCCCTTCCEEECTTC-CEE
T ss_pred             CCCCCCEEECCCCc-cCccChhhc-cCcccCCEeECCCC-CCcccCHHHH-HhhhccCCEEEccCC-Cee
Confidence            67899999999963 443322223 37899999999985 5654332223 335 48999999998 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.38  E-value=5.5e-09  Score=80.56  Aligned_cols=40  Identities=25%  Similarity=0.177  Sum_probs=23.1

Q ss_pred             HHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          10 LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        10 ~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      +...+++|++|++++|.. ++..- .....+++|++|++++|
T Consensus        29 l~~~~~~L~~L~Ls~n~l-~~~~~-~~~~~l~~L~~L~Ls~N   68 (487)
T 3oja_A           29 LRQSAWNVKELDLSGNPL-SQISA-ADLAPFTKLELLNLSSN   68 (487)
T ss_dssp             TSTTGGGCCEEECCSSCC-CCCCG-GGGTTCTTCCEEECTTS
T ss_pred             hcccCCCccEEEeeCCcC-CCCCH-HHHhCCCCCCEEEeeCC
Confidence            334455788888877653 22111 12245777777777776

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.38  E-value=6.1e-09  Score=75.13  Aligned_cols=109  Identities=24%  Similarity=0.188  Sum_probs=55.7

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|++|++++|.. +.  +......+++|++|++++| .++.....             .+..+++|++|+++++ .
T Consensus        74 ~~l~~L~~L~Ls~N~l-~~--l~~~~~~l~~L~~L~l~~N-~l~~l~~~-------------~~~~l~~L~~L~L~~N-~  135 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQL-QS--LPLLGQTLPALTVLDVSFN-RLTSLPLG-------------ALRGLGELQELYLKGN-E  135 (290)
T ss_dssp             SCCTTCCEEECCSSCC-SS--CCCCTTTCTTCCEEECCSS-CCCCCCSS-------------TTTTCTTCCEEECTTS-C
T ss_pred             CCCCcCCEEECCCCcC-Cc--CchhhccCCCCCEEECCCC-cCcccCHH-------------HHcCCCCCCEEECCCC-C
Confidence            3567888888887653 21  1112245777888888876 33321100             1124567777777664 2


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      ++.... ..+..+++|+.|+++++ .++.-.. .....+++|+.|++++|
T Consensus       136 l~~~~~-~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          136 LKTLPP-GLLTPTPKLEKLSLANN-NLTELPA-GLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             CCCCCT-TTTTTCTTCCEEECTTS-CCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred             CCccCh-hhcccccCCCEEECCCC-cCCccCH-HHhcCcCCCCEEECCCC
Confidence            332111 11224566777777663 3442111 12233556666666665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.37  E-value=6.1e-08  Score=65.81  Aligned_cols=108  Identities=14%  Similarity=0.066  Sum_probs=71.3

Q ss_pred             CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589          14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT   93 (163)
Q Consensus        14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   93 (163)
                      .++|++|+++++.. +...  .....+++|++|++++| .++.....             .+..+++|++|+++++ .++
T Consensus        30 ~~~l~~L~L~~n~i-~~ip--~~~~~l~~L~~L~Ls~N-~i~~i~~~-------------~f~~l~~L~~L~Ls~N-~l~   91 (193)
T 2wfh_A           30 PRDVTELYLDGNQF-TLVP--KELSNYKHLTLIDLSNN-RISTLSNQ-------------SFSNMTQLLTLILSYN-RLR   91 (193)
T ss_dssp             CTTCCEEECCSSCC-CSCC--GGGGGCTTCCEEECCSS-CCCCCCTT-------------TTTTCTTCCEEECCSS-CCC
T ss_pred             CCCCCEEECCCCcC-chhH--HHhhcccCCCEEECCCC-cCCEeCHh-------------HccCCCCCCEEECCCC-ccC
Confidence            46899999998653 3211  23456899999999997 44432111             1236789999999985 454


Q ss_pred             HHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589          94 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV  142 (163)
Q Consensus        94 ~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  142 (163)
                      ......+. .+++|+.|+++++ .++.-.. .....+++|+.|++++|+
T Consensus        92 ~i~~~~f~-~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           92 CIPPRTFD-GLKSLRLLSLHGN-DISVVPE-GAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             BCCTTTTT-TCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSSC
T ss_pred             EeCHHHhC-CCCCCCEEECCCC-CCCeeCh-hhhhcCccccEEEeCCCC
Confidence            43322333 7899999999984 4653221 223457899999999874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.37  E-value=1.8e-08  Score=80.20  Aligned_cols=37  Identities=16%  Similarity=0.082  Sum_probs=18.4

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      .+++|++|++++|.. +...- .....+++|++|++++|
T Consensus        47 ~l~~L~~L~Ls~n~l-~~~~~-~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A           47 RYSQLTSLDVGFNTI-SKLEP-ELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             GGTTCSEEECCSSCC-CCCCT-THHHHCTTCCEEECCSS
T ss_pred             CCCcCcEEECCCCcc-CccCH-HHHhcccCcCEEECCCC
Confidence            356666666665432 21111 12234666666666665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.37  E-value=1.1e-08  Score=78.80  Aligned_cols=76  Identities=17%  Similarity=0.074  Sum_probs=41.9

Q ss_pred             CCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCC
Q psy9589          78 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCP  157 (163)
Q Consensus        78 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  157 (163)
                      +++|++|+++++ .+++... . ...+++|+.|+++++ .++.  +......+++|+.|++++| .++...+..+...++
T Consensus       190 l~~L~~L~Ls~N-~l~~~~~-~-~~~l~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~L~l~~N-~l~c~~~~~~~~~l~  262 (487)
T 3oja_A          190 FAKLKTLDLSSN-KLAFMGP-E-FQSAAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQ  262 (487)
T ss_dssp             CTTCCEEECCSS-CCCEECG-G-GGGGTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEECTTC-CBCHHHHHHHHTTCH
T ss_pred             CCCCCEEECCCC-CCCCCCH-h-HcCCCCccEEEecCC-cCcc--cchhhccCCCCCEEEcCCC-CCcCcchHHHHHhCC
Confidence            566777777764 3443211 1 225677777777774 3442  1111234577888888887 666444444444554


Q ss_pred             CCc
Q psy9589         158 RLE  160 (163)
Q Consensus       158 ~L~  160 (163)
                      .|+
T Consensus       263 ~L~  265 (487)
T 3oja_A          263 RVQ  265 (487)
T ss_dssp             HHH
T ss_pred             CCc
Confidence            443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.35  E-value=3.2e-08  Score=78.65  Aligned_cols=42  Identities=14%  Similarity=0.150  Sum_probs=18.8

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCH
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD  120 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~  120 (163)
                      .+++|++|+++++. +.......+. .+++|+.|+++++..++.
T Consensus       247 ~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~  288 (636)
T 4eco_A          247 NLKDLTDVEVYNCP-NLTKLPTFLK-ALPEMQLINVACNRGISG  288 (636)
T ss_dssp             GCTTCCEEEEECCT-TCSSCCTTTT-TCSSCCEEECTTCTTSCH
T ss_pred             ccCCCCEEEecCCc-CCccChHHHh-cCCCCCEEECcCCCCCcc
Confidence            34556666665542 2111111222 455666666655432443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.33  E-value=2.5e-08  Score=77.72  Aligned_cols=127  Identities=16%  Similarity=0.124  Sum_probs=59.7

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTD   94 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   94 (163)
                      +++++|+++++.. +...-. ....+++|++|++++| .++.....             .+..+++|++|+++++ .++.
T Consensus        28 ~~l~~L~Ls~n~l-~~~~~~-~~~~l~~L~~L~Ls~n-~i~~i~~~-------------~~~~l~~L~~L~L~~n-~l~~   90 (570)
T 2z63_A           28 FSTKNLDLSFNPL-RHLGSY-SFFSFPELQVLDLSRC-EIQTIEDG-------------AYQSLSHLSTLILTGN-PIQS   90 (570)
T ss_dssp             SSCCEEECCSCCC-CEECTT-TTTTCSSCCEEECTTC-CCCEECTT-------------TTTTCTTCCEEECTTC-CCCE
T ss_pred             ccccEEEccCCcc-CccChh-HhhCCCCceEEECCCC-cCCccCcc-------------cccCchhCCEEeCcCC-cCCc
Confidence            4567777766542 221111 1234667777777766 33322111             1124566777777664 2332


Q ss_pred             HHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          95 ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        95 ~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      .....+. ++++|++|+++++ .++.-+... ...+++|++|++++| .++...+...+..+++|++|
T Consensus        91 ~~~~~~~-~l~~L~~L~L~~n-~l~~l~~~~-~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L  154 (570)
T 2z63_A           91 LALGAFS-GLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHL  154 (570)
T ss_dssp             ECTTTTT-TCTTCCEEECTTS-CCCCSTTCS-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEE
T ss_pred             cCHhhhc-Ccccccccccccc-ccccCCCcc-ccccccccEEecCCC-ccceecChhhhcccCCCCEE
Confidence            2222222 5667777777664 333211111 234566777777766 44321111223455555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.33  E-value=2.4e-08  Score=78.09  Aligned_cols=41  Identities=15%  Similarity=0.143  Sum_probs=23.8

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFT   55 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~   55 (163)
                      ..+++|++|++++|.. ++... .....+++|++|++++| .++
T Consensus       350 ~~l~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~L~~N-~l~  390 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVF-TDSVF-QGCSTLKRLQTLILQRN-GLK  390 (562)
T ss_dssp             SSCCCCCEEECCSSCC-CTTTT-TTCCSCSSCCEEECCSS-CCC
T ss_pred             cCCCCceEEECCCCcc-ccchh-hhhcccCCCCEEECCCC-CcC
Confidence            4677888888877653 32111 11234677777777776 444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.33  E-value=9.9e-08  Score=73.01  Aligned_cols=98  Identities=20%  Similarity=0.189  Sum_probs=54.1

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL   92 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   92 (163)
                      .+++|++|+++++.. ++..  . ...+++|++|++++| .++...                ...+++|++|+++++. +
T Consensus        40 ~l~~L~~L~Ls~n~l-~~~~--~-l~~l~~L~~L~Ls~n-~l~~~~----------------~~~l~~L~~L~Ls~N~-l   97 (457)
T 3bz5_A           40 QLATLTSLDCHNSSI-TDMT--G-IEKLTGLTKLICTSN-NITTLD----------------LSQNTNLTYLACDSNK-L   97 (457)
T ss_dssp             HHTTCCEEECCSSCC-CCCT--T-GGGCTTCSEEECCSS-CCSCCC----------------CTTCTTCSEEECCSSC-C
T ss_pred             HcCCCCEEEccCCCc-ccCh--h-hcccCCCCEEEccCC-cCCeEc----------------cccCCCCCEEECcCCC-C
Confidence            367888888888653 3321  1 345788888888887 344321                1145666666666642 3


Q ss_pred             CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      +...   + ..+++|++|+++++ .++.-.    ...+++|++|++++|
T Consensus        98 ~~~~---~-~~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           98 TNLD---V-TPLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARN  137 (457)
T ss_dssp             SCCC---C-TTCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTS
T ss_pred             ceee---c-CCCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCC
Confidence            3321   2 25666666666653 344321    233455666666655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.32  E-value=1.7e-08  Score=68.43  Aligned_cols=109  Identities=20%  Similarity=0.090  Sum_probs=70.9

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTD   94 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   94 (163)
                      ++|++|+++++.. +......+...+++|++|++++| .++.....             .+..+++|++|+++++ .++.
T Consensus        29 ~~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-------------~~~~l~~L~~L~Ls~N-~l~~   92 (192)
T 1w8a_A           29 LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRN-QLTGIEPN-------------AFEGASHIQELQLGEN-KIKE   92 (192)
T ss_dssp             TTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSS-CCCCBCTT-------------TTTTCTTCCEEECCSC-CCCE
T ss_pred             CCCCEEECCCCcC-CccCCccccccCCCCCEEECCCC-CCCCcCHh-------------HcCCcccCCEEECCCC-cCCc
Confidence            4899999999753 32211112356899999999997 44432111             1236789999999985 4554


Q ss_pred             HHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589          95 ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV  142 (163)
Q Consensus        95 ~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  142 (163)
                      .....+. .+++|+.|+++++ .++..... ....+++|++|++++|+
T Consensus        93 ~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           93 ISNKMFL-GLHQLKTLNLYDN-QISCVMPG-SFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             ECSSSST-TCTTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECTTCC
T ss_pred             cCHHHhc-CCCCCCEEECCCC-cCCeeCHH-HhhcCCCCCEEEeCCCC
Confidence            3322233 6899999999984 56643212 22457899999999983

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.31  E-value=1.4e-08  Score=80.92  Aligned_cols=83  Identities=23%  Similarity=0.199  Sum_probs=46.1

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTD   94 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   94 (163)
                      ++|++|+++++.. +...- .....+++|++|++++| .++......+             ..+++|++|+++++ .++.
T Consensus        25 ~~l~~L~Ls~n~l-~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-------------~~l~~L~~L~L~~n-~l~~   87 (680)
T 1ziw_A           25 TNITVLNLTHNQL-RRLPA-ANFTRYSQLTSLDVGFN-TISKLEPELC-------------QKLPMLKVLNLQHN-ELSQ   87 (680)
T ss_dssp             TTCSEEECCSSCC-CCCCG-GGGGGGTTCSEEECCSS-CCCCCCTTHH-------------HHCTTCCEEECCSS-CCCC
T ss_pred             CCCcEEECCCCCC-CCcCH-HHHhCCCcCcEEECCCC-ccCccCHHHH-------------hcccCcCEEECCCC-ccCc
Confidence            6899999999753 32211 12355899999999997 4443211111             24566666666664 2332


Q ss_pred             HHHHHHHHhCCCCCEEEecCC
Q psy9589          95 ASLIVLAQRCHQLHTLEVASC  115 (163)
Q Consensus        95 ~~~~~l~~~~~~L~~L~l~~~  115 (163)
                      .....+. ++++|++|+++++
T Consensus        88 l~~~~~~-~l~~L~~L~L~~n  107 (680)
T 1ziw_A           88 LSDKTFA-FCTNLTELHLMSN  107 (680)
T ss_dssp             CCTTTTT-TCTTCSEEECCSS
T ss_pred             cChhhhc-cCCCCCEEECCCC
Confidence            1111122 4556666666553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.31  E-value=2.2e-08  Score=78.90  Aligned_cols=128  Identities=12%  Similarity=0.092  Sum_probs=83.5

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL   92 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   92 (163)
                      .+++++.|+++++.. +...- .+...+++|++|++++| .++......             +..+++|++|+++++. +
T Consensus        49 ~l~~l~~l~l~~~~l-~~lp~-~~~~~l~~L~~L~L~~n-~l~~~~~~~-------------~~~l~~L~~L~L~~n~-l  111 (597)
T 3oja_B           49 TLNNQKIVTFKNSTM-RKLPA-ALLDSFRQVELLNLNDL-QIEEIDTYA-------------FAYAHTIQKLYMGFNA-I  111 (597)
T ss_dssp             GGCCCSEEEESSCEE-SEECT-HHHHHCCCCSEEECTTS-CCCEECTTT-------------TTTCTTCCEEECCSSC-C
T ss_pred             cCCCceEEEeeCCCC-CCcCH-HHHccCCCCcEEECCCC-CCCCCChHH-------------hcCCCCCCEEECCCCc-C
Confidence            357899999988642 22211 34466999999999997 454322111             1267899999999863 5


Q ss_pred             CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      +......+ ..+++|++|++++| .++.-. ..+...+++|++|++++| .++.... ..+..+++|+.|
T Consensus       112 ~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L  176 (597)
T 3oja_B          112 RYLPPHVF-QNVPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNN-NLERIED-DTFQATTSLQNL  176 (597)
T ss_dssp             CCCCTTTT-TTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEE
T ss_pred             CCCCHHHH-cCCCCCCEEEeeCC-CCCCCC-HHHhccCCCCCEEEeeCC-cCCCCCh-hhhhcCCcCcEE
Confidence            54332233 37899999999985 465322 122356899999999998 6654211 223467777765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.30  E-value=1.4e-07  Score=72.21  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=17.0

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      .+++|++|++++|.. +...    ...+++|++|++++|
T Consensus        83 ~l~~L~~L~Ls~N~l-~~~~----~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           83 QNTNLTYLACDSNKL-TNLD----VTPLTKLTYLNCDTN  116 (457)
T ss_dssp             TCTTCSEEECCSSCC-SCCC----CTTCTTCCEEECCSS
T ss_pred             cCCCCCEEECcCCCC-ceee----cCCCCcCCEEECCCC
Confidence            355666666665442 2211    233555666666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.29  E-value=2.5e-06  Score=66.24  Aligned_cols=123  Identities=18%  Similarity=0.120  Sum_probs=62.6

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHH--HHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVL--AQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS   90 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i--~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   90 (163)
                      .+++|++|++++|. +++......  ...+++|++|++++| .++...           ........+++|++|+++++ 
T Consensus       332 ~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-----------~~~~~~~~l~~L~~L~Ls~N-  397 (549)
T 2z81_A          332 HLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQ-----------KTGEILLTLKNLTSLDISRN-  397 (549)
T ss_dssp             HCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHH-----------HHHHHGGGCTTCCEEECTTC-
T ss_pred             cCccccEEEccCCc-cccccccchhhhhccccCcEEEccCC-cccccc-----------cchhhhhcCCCCCEEECCCC-
Confidence            35555555555543 233221111  123555666666555 332211           01122346788888888875 


Q ss_pred             CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      .++.  +......+++|++|++++|. ++.-.-    ...++|++|++++| .++..     ...+++|+.|
T Consensus       398 ~l~~--lp~~~~~~~~L~~L~Ls~N~-l~~l~~----~~~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L  456 (549)
T 2z81_A          398 TFHP--MPDSCQWPEKMRFLNLSSTG-IRVVKT----CIPQTLEVLDVSNN-NLDSF-----SLFLPRLQEL  456 (549)
T ss_dssp             CCCC--CCSCCCCCTTCCEEECTTSC-CSCCCT----TSCTTCSEEECCSS-CCSCC-----CCCCTTCCEE
T ss_pred             CCcc--CChhhcccccccEEECCCCC-cccccc----hhcCCceEEECCCC-Chhhh-----cccCChhcEE
Confidence            3431  11112256788888888753 442110    01257888888887 65542     2356666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.28  E-value=4.1e-08  Score=72.79  Aligned_cols=61  Identities=21%  Similarity=0.197  Sum_probs=27.0

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .+++|++|+++++ .+....... +..+++|+.|+++++ .++..... ....+++|+.|++++|
T Consensus        86 ~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A           86 PVPNLRYLDLSSN-HLHTLDEFL-FSDLQALEVLLLYNN-HIVVVDRN-AFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC-cCCcCCHHH-hCCCcCCCEEECCCC-cccEECHH-HhCCcccCCEEECCCC
Confidence            3455666666553 233211111 124556666666553 34322111 1133455666666655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.27  E-value=6.9e-08  Score=67.20  Aligned_cols=110  Identities=18%  Similarity=0.095  Sum_probs=74.2

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|++|++++|.. ..... .....+++|+.|++++| .++....             ..+..+++|++|+++++ .
T Consensus        61 ~~l~~L~~L~L~~N~l-~~i~~-~~~~~l~~L~~L~Ls~N-~l~~l~~-------------~~~~~l~~L~~L~Ls~N-~  123 (229)
T 3e6j_A           61 DSLINLKELYLGSNQL-GALPV-GVFDSLTQLTVLDLGTN-QLTVLPS-------------AVFDRLVHLKELFMCCN-K  123 (229)
T ss_dssp             TTCTTCCEEECCSSCC-CCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-------------TTTTTCTTCCEEECCSS-C
T ss_pred             hCccCCcEEECCCCCC-CCcCh-hhcccCCCcCEEECCCC-cCCccCh-------------hHhCcchhhCeEeccCC-c
Confidence            4689999999999764 22111 22356899999999998 4442211             11236789999999985 4


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV  142 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  142 (163)
                      ++.  +..-...+++|+.|+++++ .++.-.. .....+++|+.|++++|+
T Consensus       124 l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          124 LTE--LPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCS--CCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred             ccc--cCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence            542  2111247899999999985 5654322 233557999999999983

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.27  E-value=2.1e-09  Score=78.29  Aligned_cols=12  Identities=17%  Similarity=0.121  Sum_probs=6.7

Q ss_pred             hCCcCCEEEecC
Q psy9589          39 RCHQLHTLEVAS   50 (163)
Q Consensus        39 ~~~~L~~L~l~~   50 (163)
                      .+++|++|++++
T Consensus        74 ~l~~L~~L~L~~   85 (313)
T 1ogq_A           74 NLPYLNFLYIGG   85 (313)
T ss_dssp             GCTTCSEEEEEE
T ss_pred             CCCCCCeeeCCC
Confidence            355566666553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.26  E-value=6.4e-08  Score=64.55  Aligned_cols=111  Identities=15%  Similarity=0.057  Sum_probs=72.4

Q ss_pred             CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589          14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT   93 (163)
Q Consensus        14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   93 (163)
                      .++|++|+++++.. +...- .....+++|++|++++| .++.....             .+..+++|++|+++++ .++
T Consensus        27 ~~~l~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~-------------~~~~l~~L~~L~l~~N-~l~   89 (177)
T 2o6r_A           27 PSSATRLELESNKL-QSLPH-GVFDKLTQLTKLSLSQN-QIQSLPDG-------------VFDKLTKLTILYLHEN-KLQ   89 (177)
T ss_dssp             CTTCSEEECCSSCC-CCCCT-TTTTTCTTCSEEECCSS-CCCCCCTT-------------TTTTCTTCCEEECCSS-CCC
T ss_pred             CCCCcEEEeCCCcc-cEeCH-HHhcCcccccEEECCCC-cceEeChh-------------HccCCCccCEEECCCC-Ccc
Confidence            47899999999653 32111 12355899999999997 44422110             1236789999999985 454


Q ss_pred             HHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589          94 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT  145 (163)
Q Consensus        94 ~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  145 (163)
                      ..... ....+++|+.|+++++ .++.-.. .....+++|++|++++| .++
T Consensus        90 ~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~~~  137 (177)
T 2o6r_A           90 SLPNG-VFDKLTQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTN-PWD  137 (177)
T ss_dssp             CCCTT-TTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSS-CBC
T ss_pred             ccCHH-HhhCCcccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCC-Cee
Confidence            32222 2236899999999985 5653221 23355789999999998 443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.23  E-value=1.7e-06  Score=61.70  Aligned_cols=85  Identities=20%  Similarity=0.325  Sum_probs=58.1

Q ss_pred             HHhcCCCCceEecCCCCCCCH-HHHHHHHHhCCCCCEEEecCCCCCCHH-HHHHHHHcCCCCCEEeccCCCCCCh-----
Q psy9589          74 LAENCPNLYYLCLSGCSQLTD-ASLIVLAQRCHQLHTLEVASCSQFTDT-GFQALARNCRLLAKMDLEECVLITD-----  146 (163)
Q Consensus        74 ~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~~l~~-----  146 (163)
                      +...+|+|++|+|+++ .++. .++..+...+|+|+.|+|++ +.+++. .+..+ ..+ .|++|++++| .++.     
T Consensus       165 ~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l-~~l-~L~~L~L~~N-pl~~~~~~~  239 (267)
T 3rw6_A          165 IEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKI-KGL-KLEELWLDGN-SLCDTFRDQ  239 (267)
T ss_dssp             HHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGG-TTS-CCSEEECTTS-TTGGGCSSH
T ss_pred             HHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhc-ccC-CcceEEccCC-cCccccCcc
Confidence            3357899999999985 4544 23444555899999999988 456653 23222 223 8999999998 5553     


Q ss_pred             -HHHHHHHhCCCCCccCC
Q psy9589         147 -ATLIHLALGCPRLEKLI  163 (163)
Q Consensus       147 -~~~~~l~~~~~~L~~L~  163 (163)
                       .-...+...+|+|+.||
T Consensus       240 ~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          240 STYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHHHCTTCCEES
T ss_pred             hhHHHHHHHHCcccCeEC
Confidence             22346677899998876

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.22  E-value=5.6e-08  Score=75.98  Aligned_cols=16  Identities=6%  Similarity=0.241  Sum_probs=8.9

Q ss_pred             cCCCCCEEeccCCCCCC
Q psy9589         129 NCRLLAKMDLEECVLIT  145 (163)
Q Consensus       129 ~~~~L~~L~l~~~~~l~  145 (163)
                      .+++|++|++++| .++
T Consensus       471 ~l~~L~~L~L~~N-~l~  486 (562)
T 3a79_B          471 HLQALQELNVASN-QLK  486 (562)
T ss_dssp             SSCCCSEEECCSS-CCC
T ss_pred             CCCCCCEEECCCC-CCC
Confidence            3556666666665 444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.19  E-value=4.6e-07  Score=66.14  Aligned_cols=12  Identities=17%  Similarity=0.133  Sum_probs=6.5

Q ss_pred             CCcCCEEEecCC
Q psy9589          40 CHQLHTLEVASC   51 (163)
Q Consensus        40 ~~~L~~L~l~~~   51 (163)
                      +++|++|++++|
T Consensus        99 l~~L~~L~Ls~n  110 (330)
T 1xku_A           99 LVKLERLYLSKN  110 (330)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCCCCEEECCCC
Confidence            455555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.18  E-value=1e-06  Score=70.02  Aligned_cols=118  Identities=7%  Similarity=0.059  Sum_probs=72.2

Q ss_pred             HhcCCCCcEEeecCCCCCChH------------H----HHHHHH--hCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHH
Q psy9589          11 AENCPNLYYLCLSGCSQLTDA------------S----LIVLAQ--RCHQLHTLEVASCSQFTDTGFQALARGLLDSAVL   72 (163)
Q Consensus        11 ~~~~~~L~~L~l~~~~~~~~~------------~----l~~i~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~   72 (163)
                      ...+++|++|++++|.. +..            .    +..-..  .+++|++|++++|....... .            
T Consensus       202 l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~------------  267 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPF-VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-T------------  267 (636)
T ss_dssp             GGGCTTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-T------------
T ss_pred             HhcccCCCEEECcCCcc-ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-H------------
Confidence            34688999999999774 441            0    111112  68899999999884222110 0            


Q ss_pred             HHHhcCCCCceEecCCCCCCCH-HHHHHHHH-----hCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589          73 SLAENCPNLYYLCLSGCSQLTD-ASLIVLAQ-----RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT  145 (163)
Q Consensus        73 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~-----~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  145 (163)
                       ....+++|++|+++++..++. .....+..     .+++|+.|+++++ .++.-.-......+++|+.|++++| .++
T Consensus       268 -~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N-~l~  343 (636)
T 4eco_A          268 -FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYN-QLE  343 (636)
T ss_dssp             -TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSC-CCE
T ss_pred             -HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCC-cCc
Confidence             112578899999988644766 33333431     2488999999885 4552111113355788888888887 554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.13  E-value=3.3e-07  Score=62.24  Aligned_cols=103  Identities=21%  Similarity=0.186  Sum_probs=70.9

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL   92 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   92 (163)
                      .+++|++|++++|.. +.  +......+++|++|++++| .++...  .+             ..+++|++|+++++ .+
T Consensus        68 ~l~~L~~L~l~~n~l-~~--l~~~~~~~~~L~~L~L~~N-~l~~l~--~~-------------~~l~~L~~L~l~~N-~i  127 (198)
T 1ds9_A           68 GMENLRILSLGRNLI-KK--IENLDAVADTLEELWISYN-QIASLS--GI-------------EKLVNLRVLYMSNN-KI  127 (198)
T ss_dssp             HHTTCCEEEEEEEEE-CS--CSSHHHHHHHCSEEEEEEE-ECCCHH--HH-------------HHHHHSSEEEESEE-EC
T ss_pred             cCCCCCEEECCCCCc-cc--ccchhhcCCcCCEEECcCC-cCCcCC--cc-------------ccCCCCCEEECCCC-cC
Confidence            478999999999753 32  2234455789999999998 555421  11             24678999999995 46


Q ss_pred             CHHH-HHHHHHhCCCCCEEEecCCCCCCHH---------HHHHHHHcCCCCCEEe
Q psy9589          93 TDAS-LIVLAQRCHQLHTLEVASCSQFTDT---------GFQALARNCRLLAKMD  137 (163)
Q Consensus        93 ~~~~-~~~l~~~~~~L~~L~l~~~~~i~~~---------~~~~l~~~~~~L~~L~  137 (163)
                      ++.. +..+. .+++|++|++++++ ++..         ........+++|+.||
T Consensus       128 ~~~~~~~~l~-~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          128 TNWGEIDKLA-ALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CCHHHHHHHT-TTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CchhHHHHHh-cCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence            6543 34444 89999999999853 4332         1123346689999998

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.13  E-value=4.5e-09  Score=73.51  Aligned_cols=63  Identities=14%  Similarity=0.072  Sum_probs=30.6

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCC---EEEecCCCCCCHHHHHHHHHcCCCCC-EEeccCCCCCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLH---TLEVASCSQFTDTGFQALARNCRLLA-KMDLEECVLIT  145 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~---~L~l~~~~~i~~~~~~~l~~~~~~L~-~L~l~~~~~l~  145 (163)
                      .+++|++|+++++. ++.  +.. ...+++|+   .|++++++.++.-... ....+++|+ .|++++| .++
T Consensus       103 ~l~~L~~L~l~~n~-l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n-~l~  169 (239)
T 2xwt_C          103 ELPLLKFLGIFNTG-LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNN-GFT  169 (239)
T ss_dssp             CCTTCCEEEEEEEC-CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSC-CCC
T ss_pred             CCCCCCEEeCCCCC-Ccc--ccc-cccccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCC-CCc
Confidence            35566666665532 222  111 22455555   6666664344432211 123456777 7777776 444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.12  E-value=2.4e-08  Score=73.11  Aligned_cols=127  Identities=13%  Similarity=0.004  Sum_probs=68.7

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTD   94 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   94 (163)
                      ++|++|++++|.. +..... ....+++|++|++++| .++.....             ....+++|++|+++++ .++.
T Consensus       193 ~~L~~L~l~~n~i-~~~~~~-~l~~l~~L~~L~L~~N-~l~~~~~~-------------~~~~l~~L~~L~L~~N-~l~~  255 (332)
T 2ft3_A          193 ETLNELHLDHNKI-QAIELE-DLLRYSKLYRLGLGHN-QIRMIENG-------------SLSFLPTLRELHLDNN-KLSR  255 (332)
T ss_dssp             SSCSCCBCCSSCC-CCCCTT-SSTTCTTCSCCBCCSS-CCCCCCTT-------------GGGGCTTCCEEECCSS-CCCB
T ss_pred             CCCCEEECCCCcC-CccCHH-HhcCCCCCCEEECCCC-cCCcCChh-------------HhhCCCCCCEEECCCC-cCee
Confidence            4666677766542 221111 1234677777777776 33321110             1235788888888875 3441


Q ss_pred             HHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHH-----cCCCCCEEeccCCCCCChHH-HHHHHhCCCCCccC
Q psy9589          95 ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR-----NCRLLAKMDLEECVLITDAT-LIHLALGCPRLEKL  162 (163)
Q Consensus        95 ~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~-----~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~L~~L  162 (163)
                        +..-...+++|+.|+++++ .++..+...+..     ..+.|+.|++++| .++... ....+..+++|+.+
T Consensus       256 --lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N-~~~~~~~~~~~~~~l~~L~~l  325 (332)
T 2ft3_A          256 --VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNN-PVPYWEVQPATFRCVTDRLAI  325 (332)
T ss_dssp             --CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSS-SSCGGGSCGGGGTTBCCSTTE
T ss_pred             --cChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecC-cccccccCcccccccchhhhh
Confidence              1111236888888888874 455443332221     1467888888887 444221 12334566777655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.11  E-value=3.5e-08  Score=72.21  Aligned_cols=64  Identities=22%  Similarity=0.154  Sum_probs=31.0

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCCh
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITD  146 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~  146 (163)
                      .+++|++|+++++ .+++.....+ ..+++|+.|+++++ .++.-.  .....+++|++|++++| .++.
T Consensus       215 ~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~lp--~~l~~l~~L~~L~l~~N-~l~~  278 (332)
T 2ft3_A          215 RYSKLYRLGLGHN-QIRMIENGSL-SFLPTLRELHLDNN-KLSRVP--AGLPDLKLLQVVYLHTN-NITK  278 (332)
T ss_dssp             TCTTCSCCBCCSS-CCCCCCTTGG-GGCTTCCEEECCSS-CCCBCC--TTGGGCTTCCEEECCSS-CCCB
T ss_pred             CCCCCCEEECCCC-cCCcCChhHh-hCCCCCCEEECCCC-cCeecC--hhhhcCccCCEEECCCC-CCCc
Confidence            3455666666553 2332211122 25666666666663 343111  11234566777777665 4443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.10  E-value=3.8e-08  Score=71.62  Aligned_cols=38  Identities=24%  Similarity=0.311  Sum_probs=21.5

Q ss_pred             hcCCCCcEEeecC-CCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          12 ENCPNLYYLCLSG-CSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        12 ~~~~~L~~L~l~~-~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      ..+++|++|++++ +.. ....- .....+++|++|++++|
T Consensus        73 ~~l~~L~~L~L~~~n~l-~~~~p-~~l~~l~~L~~L~Ls~n  111 (313)
T 1ogq_A           73 ANLPYLNFLYIGGINNL-VGPIP-PAIAKLTQLHYLYITHT  111 (313)
T ss_dssp             GGCTTCSEEEEEEETTE-ESCCC-GGGGGCTTCSEEEEEEE
T ss_pred             hCCCCCCeeeCCCCCcc-cccCC-hhHhcCCCCCEEECcCC
Confidence            3577788888874 332 11111 11245777888888776

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.07  E-value=1.4e-06  Score=68.42  Aligned_cols=105  Identities=18%  Similarity=0.146  Sum_probs=72.8

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|++|++++|.. +.  +......+++|+.|++++| .++...  .             ...+++|+.|+++++ .
T Consensus       460 ~~l~~L~~L~Ls~N~l-~~--lp~~~~~l~~L~~L~Ls~N-~l~~lp--~-------------l~~l~~L~~L~Ls~N-~  519 (567)
T 1dce_A          460 EQLLLVTHLDLSHNRL-RA--LPPALAALRCLEVLQASDN-ALENVD--G-------------VANLPRLQELLLCNN-R  519 (567)
T ss_dssp             GGGTTCCEEECCSSCC-CC--CCGGGGGCTTCCEEECCSS-CCCCCG--G-------------GTTCSSCCEEECCSS-C
T ss_pred             cccccCcEeecCcccc-cc--cchhhhcCCCCCEEECCCC-CCCCCc--c-------------cCCCCCCcEEECCCC-C
Confidence            4578999999999764 32  2123456999999999998 454321  1             126899999999995 4


Q ss_pred             CCHHH-HHHHHHhCCCCCEEEecCCCCCCHH--HHHHHHHcCCCCCEEec
Q psy9589          92 LTDAS-LIVLAQRCHQLHTLEVASCSQFTDT--GFQALARNCRLLAKMDL  138 (163)
Q Consensus        92 ~~~~~-~~~l~~~~~~L~~L~l~~~~~i~~~--~~~~l~~~~~~L~~L~l  138 (163)
                      ++... ...+. .+++|+.|+++++ .++..  ....+...+|+|+.|++
T Consensus       520 l~~~~~p~~l~-~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          520 LQQSAAIQPLV-SCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCSSSTTGGGG-GCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCcHHHh-cCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence            55443 33444 7999999999985 45432  23345556899999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.07  E-value=5.6e-08  Score=67.89  Aligned_cols=65  Identities=15%  Similarity=0.061  Sum_probs=30.9

Q ss_pred             cCCCCc---eEecCCCCCCCHHHHHHHHHhCCCCC-EEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589          77 NCPNLY---YLCLSGCSQLTDASLIVLAQRCHQLH-TLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT  145 (163)
Q Consensus        77 ~~~~L~---~L~l~~~~~~~~~~~~~l~~~~~~L~-~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  145 (163)
                      .+++|+   +|+++++..++......+ ..+++|+ .|+++++ .++.-+.. .... ++|++|++++|..++
T Consensus       125 ~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n-~l~~i~~~-~~~~-~~L~~L~L~~n~~l~  193 (239)
T 2xwt_C          125 KVYSTDIFFILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNN-GFTSVQGY-AFNG-TKLDAVYLNKNKYLT  193 (239)
T ss_dssp             TCCBCCSEEEEEEESCTTCCEECTTTT-TTTBSSEEEEECCSC-CCCEECTT-TTTT-CEEEEEECTTCTTCC
T ss_pred             cccccccccEEECCCCcchhhcCcccc-cchhcceeEEEcCCC-CCcccCHh-hcCC-CCCCEEEcCCCCCcc
Confidence            345555   677766423432221112 2566677 7777663 34421111 1122 567777777663244

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.03  E-value=1.5e-05  Score=56.85  Aligned_cols=87  Identities=23%  Similarity=0.312  Sum_probs=57.3

Q ss_pred             HHHhCCcCCEEEecCCCCCCh-HHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHH-HHHHHHHhCCCCCEEEec
Q psy9589          36 LAQRCHQLHTLEVASCSQFTD-TGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDA-SLIVLAQRCHQLHTLEVA  113 (163)
Q Consensus        36 i~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~  113 (163)
                      +...+|+|+.|++++| .++. .++.            .....+|+|+.|+|+++ .+++. .+..+. .+ +|++|++.
T Consensus       165 ~~~~l~~L~~L~Ls~N-~l~~l~~l~------------~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~  228 (267)
T 3rw6_A          165 IEENIPELLSLNLSNN-RLYRLDDMS------------SIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLD  228 (267)
T ss_dssp             HHHHCTTCCEEECTTS-CCCCCGGGT------------THHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECT
T ss_pred             HHhhCCCCCEEECCCC-CCCCCccch------------hHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEcc
Confidence            4467999999999998 4443 2221            12236899999999985 45543 333332 34 89999999


Q ss_pred             CCCCCCH------HHHHHHHHcCCCCCEEecc
Q psy9589         114 SCSQFTD------TGFQALARNCRLLAKMDLE  139 (163)
Q Consensus       114 ~~~~i~~------~~~~~l~~~~~~L~~L~l~  139 (163)
                      +++ +..      .....+...+|+|+.||=.
T Consensus       229 ~Np-l~~~~~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          229 GNS-LCDTFRDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             TST-TGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred             CCc-CccccCcchhHHHHHHHHCcccCeECCc
Confidence            865 442      2233456679999998744

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.01  E-value=1.8e-07  Score=62.30  Aligned_cols=121  Identities=14%  Similarity=0.071  Sum_probs=75.1

Q ss_pred             CcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHH
Q psy9589          17 LYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDAS   96 (163)
Q Consensus        17 L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~   96 (163)
                      .+.++++++. ++...    ....++|++|+++++ .++.....             ....+++|++|+++++ .++...
T Consensus         9 ~~~l~~~~~~-l~~~p----~~~~~~l~~L~l~~n-~l~~~~~~-------------~~~~l~~L~~L~l~~n-~l~~~~   68 (177)
T 2o6r_A            9 GTEIRCNSKG-LTSVP----TGIPSSATRLELESN-KLQSLPHG-------------VFDKLTQLTKLSLSQN-QIQSLP   68 (177)
T ss_dssp             TTEEECCSSC-CSSCC----TTCCTTCSEEECCSS-CCCCCCTT-------------TTTTCTTCSEEECCSS-CCCCCC
T ss_pred             CCEEEecCCC-CccCC----CCCCCCCcEEEeCCC-cccEeCHH-------------HhcCcccccEEECCCC-cceEeC
Confidence            5677777744 33211    122578999999997 44422111             1236789999999985 454322


Q ss_pred             HHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          97 LIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        97 ~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      ...+ ..+++|+.|+++++ .++.... .....+++|++|++++| .++.. ...++..+++|+.|
T Consensus        69 ~~~~-~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L  129 (177)
T 2o6r_A           69 DGVF-DKLTKLTILYLHEN-KLQSLPN-GVFDKLTQLKELALDTN-QLKSV-PDGIFDRLTSLQKI  129 (177)
T ss_dssp             TTTT-TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEE
T ss_pred             hhHc-cCCCccCEEECCCC-CccccCH-HHhhCCcccCEEECcCC-cceEe-CHHHhcCCcccCEE
Confidence            2222 37899999999985 5664321 22345799999999998 66532 12334567777765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.98  E-value=3.7e-07  Score=61.89  Aligned_cols=119  Identities=17%  Similarity=0.036  Sum_probs=74.1

Q ss_pred             cEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHH
Q psy9589          18 YYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASL   97 (163)
Q Consensus        18 ~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~   97 (163)
                      +.++++++. ++...-    ...++|++|+++++ .++... .             .+..+++|++|+++++ .++....
T Consensus        13 ~~l~~~~~~-l~~ip~----~~~~~l~~L~L~~n-~i~~ip-~-------------~~~~l~~L~~L~Ls~N-~i~~i~~   71 (193)
T 2wfh_A           13 TVVRCSNKG-LKVLPK----GIPRDVTELYLDGN-QFTLVP-K-------------ELSNYKHLTLIDLSNN-RISTLSN   71 (193)
T ss_dssp             TEEECTTSC-CSSCCS----CCCTTCCEEECCSS-CCCSCC-G-------------GGGGCTTCCEEECCSS-CCCCCCT
T ss_pred             CEEEcCCCC-CCcCCC----CCCCCCCEEECCCC-cCchhH-H-------------HhhcccCCCEEECCCC-cCCEeCH
Confidence            567777643 222110    12468999999997 444221 1             1236899999999985 4554322


Q ss_pred             HHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          98 IVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        98 ~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      ..+. ++++|++|+++++ .++...... ...+++|+.|++++| .++.-. ...+..+++|+.|
T Consensus        72 ~~f~-~l~~L~~L~Ls~N-~l~~i~~~~-f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L  131 (193)
T 2wfh_A           72 QSFS-NMTQLLTLILSYN-RLRCIPPRT-FDGLKSLRLLSLHGN-DISVVP-EGAFNDLSALSHL  131 (193)
T ss_dssp             TTTT-TCTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEE
T ss_pred             hHcc-CCCCCCEEECCCC-ccCEeCHHH-hCCCCCCCEEECCCC-CCCeeC-hhhhhcCccccEE
Confidence            2333 7899999999985 465433222 345799999999998 665421 1223456666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.94  E-value=1.3e-07  Score=64.04  Aligned_cols=121  Identities=14%  Similarity=0.086  Sum_probs=74.6

Q ss_pred             cEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHH
Q psy9589          18 YYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASL   97 (163)
Q Consensus        18 ~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~   97 (163)
                      ++++++++. ++...-    ...++|++|+++++ .++.....            .++..+++|++|+++++ .++....
T Consensus        11 ~~l~~s~~~-l~~ip~----~~~~~l~~L~l~~n-~i~~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~   71 (192)
T 1w8a_A           11 TTVDCTGRG-LKEIPR----DIPLHTTELLLNDN-ELGRISSD------------GLFGRLPHLVKLELKRN-QLTGIEP   71 (192)
T ss_dssp             TEEECTTSC-CSSCCS----CCCTTCSEEECCSC-CCCSBCCS------------CSGGGCTTCCEEECCSS-CCCCBCT
T ss_pred             CEEEcCCCC-cCcCcc----CCCCCCCEEECCCC-cCCccCCc------------cccccCCCCCEEECCCC-CCCCcCH
Confidence            678887754 222110    12348999999997 44322110            01236899999999995 4554322


Q ss_pred             HHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          98 IVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        98 ~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      ..+. .+++|++|+++++ .++..... ....+++|++|++++| .++... ...+..+++|+.|
T Consensus        72 ~~~~-~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L  131 (192)
T 1w8a_A           72 NAFE-GASHIQELQLGEN-KIKEISNK-MFLGLHQLKTLNLYDN-QISCVM-PGSFEHLNSLTSL  131 (192)
T ss_dssp             TTTT-TCTTCCEEECCSC-CCCEECSS-SSTTCTTCCEEECCSS-CCCEEC-TTSSTTCTTCCEE
T ss_pred             hHcC-CcccCCEEECCCC-cCCccCHH-HhcCCCCCCEEECCCC-cCCeeC-HHHhhcCCCCCEE
Confidence            3333 7899999999984 56643322 2245799999999998 666421 1223456666655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.92  E-value=1.2e-06  Score=70.77  Aligned_cols=111  Identities=21%  Similarity=0.072  Sum_probs=69.4

Q ss_pred             HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589          11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS   90 (163)
Q Consensus        11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   90 (163)
                      ...+++|+.|+|++|... ...- .+ ..+++|++|+|++| .++... .             ....+++|++|+|+++ 
T Consensus       220 ~~~l~~L~~L~Ls~n~l~-~l~~-~~-~~l~~L~~L~Ls~N-~l~~lp-~-------------~~~~l~~L~~L~Ls~N-  280 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIF-NISA-NI-FKYDFLTRLYLNGN-SLTELP-A-------------EIKNLSNLRVLDLSHN-  280 (727)
T ss_dssp             --CCCCCCEEECTTSCCS-CCCG-GG-GGCCSCSCCBCTTS-CCSCCC-G-------------GGGGGTTCCEEECTTS-
T ss_pred             hccCCCCcEEECCCCCCC-CCCh-hh-cCCCCCCEEEeeCC-cCcccC-h-------------hhhCCCCCCEEeCcCC-
Confidence            345688889999886632 1110 11 25888999999887 443110 0             0136789999999985 


Q ss_pred             CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCCh
Q psy9589          91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITD  146 (163)
Q Consensus        91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~  146 (163)
                      .++.. ...+ ..+++|++|+|++| .++.-.  .-...+++|+.|++++| .++.
T Consensus       281 ~l~~l-p~~~-~~l~~L~~L~L~~N-~l~~lp--~~~~~l~~L~~L~L~~N-~l~~  330 (727)
T 4b8c_D          281 RLTSL-PAEL-GSCFQLKYFYFFDN-MVTTLP--WEFGNLCNLQFLGVEGN-PLEK  330 (727)
T ss_dssp             CCSSC-CSSG-GGGTTCSEEECCSS-CCCCCC--SSTTSCTTCCCEECTTS-CCCS
T ss_pred             cCCcc-Chhh-cCCCCCCEEECCCC-CCCccC--hhhhcCCCccEEeCCCC-ccCC
Confidence            45511 1223 37889999999885 455221  11355789999999998 6664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.89  E-value=5.1e-07  Score=72.84  Aligned_cols=103  Identities=17%  Similarity=0.150  Sum_probs=66.0

Q ss_pred             HHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCC
Q psy9589          37 AQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS  116 (163)
Q Consensus        37 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  116 (163)
                      ...+++|+.|++++|. +.....             .+ ..+++|++|+|+++ .++. ....+ ..+++|+.|+|+++ 
T Consensus       220 ~~~l~~L~~L~Ls~n~-l~~l~~-------------~~-~~l~~L~~L~Ls~N-~l~~-lp~~~-~~l~~L~~L~Ls~N-  280 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQ-IFNISA-------------NI-FKYDFLTRLYLNGN-SLTE-LPAEI-KNLSNLRVLDLSHN-  280 (727)
T ss_dssp             --CCCCCCEEECTTSC-CSCCCG-------------GG-GGCCSCSCCBCTTS-CCSC-CCGGG-GGGTTCCEEECTTS-
T ss_pred             hccCCCCcEEECCCCC-CCCCCh-------------hh-cCCCCCCEEEeeCC-cCcc-cChhh-hCCCCCCEEeCcCC-
Confidence            4567899999999984 332100             01 15789999999995 4551 11223 47899999999985 


Q ss_pred             CCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589         117 QFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI  163 (163)
Q Consensus       117 ~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~  163 (163)
                      .++.  +..-...+++|++|++++| .++.  +..-+..+++|+.|+
T Consensus       281 ~l~~--lp~~~~~l~~L~~L~L~~N-~l~~--lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          281 RLTS--LPAELGSCFQLKYFYFFDN-MVTT--LPWEFGNLCNLQFLG  322 (727)
T ss_dssp             CCSS--CCSSGGGGTTCSEEECCSS-CCCC--CCSSTTSCTTCCCEE
T ss_pred             cCCc--cChhhcCCCCCCEEECCCC-CCCc--cChhhhcCCCccEEe
Confidence            4662  1122345789999999998 6653  222245677777663

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.87  E-value=4.5e-06  Score=66.26  Aligned_cols=62  Identities=26%  Similarity=0.195  Sum_probs=31.9

Q ss_pred             CCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHH
Q psy9589          78 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATL  149 (163)
Q Consensus        78 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~  149 (163)
                      +++|+.|+++++ .++.     +...+++|+.|++++| .++.-  .....++++|+.|++++| .++....
T Consensus       240 l~~L~~L~Ls~N-~L~~-----lp~~~~~L~~L~Ls~N-~L~~l--p~~l~~l~~L~~L~L~~N-~l~~~~~  301 (622)
T 3g06_A          240 PSELKELMVSGN-RLTS-----LPMLPSGLLSLSVYRN-QLTRL--PESLIHLSSETTVNLEGN-PLSERTL  301 (622)
T ss_dssp             CTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCCSC--CGGGGGSCTTCEEECCSC-CCCHHHH
T ss_pred             CCcCcEEECCCC-CCCc-----CCcccccCcEEeCCCC-CCCcC--CHHHhhccccCEEEecCC-CCCCcCH
Confidence            455666666553 2321     1114566666666664 34421  111244677777777776 5655433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.86  E-value=7.6e-07  Score=65.09  Aligned_cols=125  Identities=18%  Similarity=0.152  Sum_probs=83.2

Q ss_pred             CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589          14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT   93 (163)
Q Consensus        14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   93 (163)
                      ..++..+.+.+.  +.......+...|++|+.|+++++ .++..+-.             .+..|++|+.|++...  +.
T Consensus       201 ~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~-------------aF~~~~~L~~l~l~~n--i~  262 (329)
T 3sb4_A          201 PRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKT-NATTIPDF-------------TFAQKKYLLKIKLPHN--LK  262 (329)
T ss_dssp             GGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTB-CCCEECTT-------------TTTTCTTCCEEECCTT--CC
T ss_pred             ccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCC-CcceecHh-------------hhhCCCCCCEEECCcc--cc
Confidence            456667777663  566777777788999999999986 34432211             2347899999999773  44


Q ss_pred             HHHHHHHHHhCCCCC-EEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          94 DASLIVLAQRCHQLH-TLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        94 ~~~~~~l~~~~~~L~-~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      .-+-.++ .+|++|+ .+.+..  .++.-+-. .+.+|++|+.|+++.+ .++.-. ...+.+|++|+.+
T Consensus       263 ~I~~~aF-~~~~~L~~~l~l~~--~l~~I~~~-aF~~c~~L~~l~l~~n-~i~~I~-~~aF~~~~~L~~l  326 (329)
T 3sb4_A          263 TIGQRVF-SNCGRLAGTLELPA--SVTAIEFG-AFMGCDNLRYVLATGD-KITTLG-DELFGNGVPSKLI  326 (329)
T ss_dssp             EECTTTT-TTCTTCCEEEEECT--TCCEECTT-TTTTCTTEEEEEECSS-CCCEEC-TTTTCTTCCCCEE
T ss_pred             eehHHHh-hCChhccEEEEEcc--cceEEchh-hhhCCccCCEEEeCCC-ccCccc-hhhhcCCcchhhh
Confidence            3222333 4899999 999976  34433322 3356899999999875 554421 2335788888865

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.67  E-value=5.7e-06  Score=54.81  Aligned_cols=103  Identities=19%  Similarity=0.055  Sum_probs=56.6

Q ss_pred             CCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHH
Q psy9589          16 NLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDA   95 (163)
Q Consensus        16 ~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~   95 (163)
                      ..++|+++++. ++....    ...++|++|++++| .++...-.             .+..+++|++|+++++ .++..
T Consensus        10 ~~~~l~~s~n~-l~~ip~----~~~~~l~~L~L~~N-~i~~~~~~-------------~~~~l~~L~~L~Ls~N-~l~~l   69 (170)
T 3g39_A           10 SGTTVDCSGKS-LASVPT----GIPTTTQVLYLYDN-QITKLEPG-------------VFDRLTQLTRLDLDNN-QLTVL   69 (170)
T ss_dssp             ETTEEECTTSC-CSSCCS----CCCTTCSEEECCSS-CCCCCCTT-------------TTTTCTTCSEEECCSS-CCCCC
T ss_pred             CCCEEEeCCCC-cCccCc----cCCCCCcEEEcCCC-cCCccChh-------------hhcCcccCCEEECCCC-CcCcc
Confidence            34667777643 222110    11367888888876 33322100             1125678888888874 34422


Q ss_pred             HHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          96 SLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        96 ~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .. ..+..+++|+.|+++++ .++.-.. .....+++|++|++++|
T Consensus        70 ~~-~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           70 PA-GVFDKLTQLTQLSLNDN-QLKSIPR-GAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             CT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred             Ch-hhccCCCCCCEEECCCC-ccCEeCH-HHhcCCCCCCEEEeCCC
Confidence            21 12236788888888774 4553221 12344678888888887

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.65  E-value=5e-06  Score=60.69  Aligned_cols=36  Identities=19%  Similarity=0.358  Sum_probs=21.7

Q ss_pred             CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      +++|++|.+++  .++...+..+...+++|+.|+++++
T Consensus        24 ~~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n   59 (329)
T 3sb4_A           24 ANSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNA   59 (329)
T ss_dssp             HHHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEE
T ss_pred             hCceeEEEEec--cccHHHHHHHHHhhccCeEEecCcc
Confidence            34566677665  2355555555555667777777665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.62  E-value=7.5e-06  Score=54.50  Aligned_cols=83  Identities=17%  Similarity=0.140  Sum_probs=46.6

Q ss_pred             CcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCH
Q psy9589          41 HQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD  120 (163)
Q Consensus        41 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~  120 (163)
                      ++|++|++++| .++.....             .+..+++|++|+++++ .++.... ..+..+++|+.|+++++ .++.
T Consensus        33 ~~L~~L~Ls~N-~l~~~~~~-------------~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N-~l~~   95 (174)
T 2r9u_A           33 TDKQRLWLNNN-QITKLEPG-------------VFDHLVNLQQLYFNSN-KLTAIPT-GVFDKLTQLTQLDLNDN-HLKS   95 (174)
T ss_dssp             TTCSEEECCSS-CCCCCCTT-------------TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCC
T ss_pred             CCCcEEEeCCC-CccccCHH-------------HhcCCcCCCEEECCCC-CCCccCh-hHhCCcchhhEEECCCC-ccce
Confidence            67788888776 33321100             1125677888888774 3443211 12236778888888774 4543


Q ss_pred             HHHHHHHHcCCCCCEEeccCC
Q psy9589         121 TGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus       121 ~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      -. ......+++|+.|++++|
T Consensus        96 l~-~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           96 IP-RGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CC-TTTTTTCTTCSEEECCSS
T ss_pred             eC-HHHhccccCCCEEEeCCC
Confidence            22 112244677888888877

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.59  E-value=6.5e-05  Score=59.66  Aligned_cols=110  Identities=18%  Similarity=0.062  Sum_probs=57.2

Q ss_pred             CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589          14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT   93 (163)
Q Consensus        14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   93 (163)
                      +++|++|++++|.. +.     +....++|+.|++++| .++...                 ...++|+.|+++++ .++
T Consensus       180 ~~~L~~L~Ls~N~l-~~-----l~~~~~~L~~L~L~~N-~l~~l~-----------------~~~~~L~~L~Ls~N-~L~  234 (622)
T 3g06_A          180 PSGLQELSVSDNQL-AS-----LPTLPSELYKLWAYNN-RLTSLP-----------------ALPSGLKELIVSGN-RLT  234 (622)
T ss_dssp             CTTCCEEECCSSCC-SC-----CCCCCTTCCEEECCSS-CCSSCC-----------------CCCTTCCEEECCSS-CCS
T ss_pred             CCCCcEEECCCCCC-CC-----CCCccchhhEEECcCC-cccccC-----------------CCCCCCCEEEccCC-ccC
Confidence            46677777766542 22     1112456667776665 232110                 12356777777764 343


Q ss_pred             HHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          94 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        94 ~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      ...     ..+++|+.|+++++ .++.-.     ..+++|+.|++++| .++.  +...+..+++|+.|
T Consensus       235 ~lp-----~~l~~L~~L~Ls~N-~L~~lp-----~~~~~L~~L~Ls~N-~L~~--lp~~l~~l~~L~~L  289 (622)
T 3g06_A          235 SLP-----VLPSELKELMVSGN-RLTSLP-----MLPSGLLSLSVYRN-QLTR--LPESLIHLSSETTV  289 (622)
T ss_dssp             CCC-----CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCCS--CCGGGGGSCTTCEE
T ss_pred             cCC-----CCCCcCcEEECCCC-CCCcCC-----cccccCcEEeCCCC-CCCc--CCHHHhhccccCEE
Confidence            211     35567777777764 344211     14567777777776 5552  22223455666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.44  E-value=1.9e-05  Score=60.36  Aligned_cols=12  Identities=17%  Similarity=0.252  Sum_probs=5.9

Q ss_pred             CCcCCEEEecCC
Q psy9589          40 CHQLHTLEVASC   51 (163)
Q Consensus        40 ~~~L~~L~l~~~   51 (163)
                      +++|++|++++|
T Consensus       152 l~~L~~L~l~~N  163 (454)
T 1jl5_A          152 SSFLKIIDVDNN  163 (454)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCCCCEEECCCC
Confidence            444555555444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.37  E-value=1.5e-05  Score=52.71  Aligned_cols=85  Identities=18%  Similarity=0.076  Sum_probs=56.3

Q ss_pred             CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589          14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT   93 (163)
Q Consensus        14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   93 (163)
                      .++|++|++++|.. +...- .....+++|++|++++| .++....             .++..+++|++|+++++ .++
T Consensus        29 ~~~l~~L~L~~N~i-~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~~-------------~~f~~l~~L~~L~L~~N-~l~   91 (170)
T 3g39_A           29 PTTTQVLYLYDNQI-TKLEP-GVFDRLTQLTRLDLDNN-QLTVLPA-------------GVFDKLTQLTQLSLNDN-QLK   91 (170)
T ss_dssp             CTTCSEEECCSSCC-CCCCT-TTTTTCTTCSEEECCSS-CCCCCCT-------------TTTTTCTTCCEEECCSS-CCC
T ss_pred             CCCCcEEEcCCCcC-CccCh-hhhcCcccCCEEECCCC-CcCccCh-------------hhccCCCCCCEEECCCC-ccC
Confidence            47899999999763 22111 12245899999999998 4443211             11236789999999985 454


Q ss_pred             HHHHHHHHHhCCCCCEEEecCCC
Q psy9589          94 DASLIVLAQRCHQLHTLEVASCS  116 (163)
Q Consensus        94 ~~~~~~l~~~~~~L~~L~l~~~~  116 (163)
                      ...... ...+++|+.|++++++
T Consensus        92 ~~~~~~-~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           92 SIPRGA-FDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CCCTTT-TTTCTTCCEEECCSSC
T ss_pred             EeCHHH-hcCCCCCCEEEeCCCC
Confidence            322222 3378999999999854

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.34  E-value=1.6e-05  Score=52.82  Aligned_cols=85  Identities=14%  Similarity=0.031  Sum_probs=56.3

Q ss_pred             CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589          14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT   93 (163)
Q Consensus        14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   93 (163)
                      .++|++|++++|.. +... ......+++|++|++++| .++....             .++..+++|++|+++++ .++
T Consensus        32 ~~~L~~L~Ls~N~l-~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~~-------------~~~~~l~~L~~L~L~~N-~l~   94 (174)
T 2r9u_A           32 PTDKQRLWLNNNQI-TKLE-PGVFDHLVNLQQLYFNSN-KLTAIPT-------------GVFDKLTQLTQLDLNDN-HLK   94 (174)
T ss_dssp             CTTCSEEECCSSCC-CCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-------------TTTTTCTTCCEEECCSS-CCC
T ss_pred             CCCCcEEEeCCCCc-cccC-HHHhcCCcCCCEEECCCC-CCCccCh-------------hHhCCcchhhEEECCCC-ccc
Confidence            37899999999763 2211 112346899999999998 4443210             01236789999999985 454


Q ss_pred             HHHHHHHHHhCCCCCEEEecCCC
Q psy9589          94 DASLIVLAQRCHQLHTLEVASCS  116 (163)
Q Consensus        94 ~~~~~~l~~~~~~L~~L~l~~~~  116 (163)
                      .... .....+++|+.|++++++
T Consensus        95 ~l~~-~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           95 SIPR-GAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             CCCT-TTTTTCTTCSEEECCSSC
T ss_pred             eeCH-HHhccccCCCEEEeCCCC
Confidence            3221 223378999999999864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.32  E-value=0.00018  Score=56.55  Aligned_cols=10  Identities=20%  Similarity=0.072  Sum_probs=5.5

Q ss_pred             CCcEEeecCC
Q psy9589          16 NLYYLCLSGC   25 (163)
Q Consensus        16 ~L~~L~l~~~   25 (163)
                      +|++|+++++
T Consensus        60 ~L~~L~Ls~n   69 (571)
T 3cvr_A           60 QFSELQLNRL   69 (571)
T ss_dssp             TCSEEECCSS
T ss_pred             CccEEEeCCC
Confidence            5555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.30  E-value=5.6e-05  Score=57.71  Aligned_cols=33  Identities=15%  Similarity=0.081  Sum_probs=19.0

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      .+++|++|++++|.. +.     +....++|++|++++|
T Consensus       151 ~l~~L~~L~l~~N~l-~~-----lp~~~~~L~~L~L~~n  183 (454)
T 1jl5_A          151 NSSFLKIIDVDNNSL-KK-----LPDLPPSLEFIAAGNN  183 (454)
T ss_dssp             TCTTCCEEECCSSCC-SC-----CCCCCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCcC-cc-----cCCCcccccEEECcCC
Confidence            456777777777542 21     1112347777777776

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.15  E-value=9.2e-05  Score=58.23  Aligned_cols=66  Identities=11%  Similarity=0.000  Sum_probs=32.5

Q ss_pred             CCCceEecCCCCCCCHHHH--HHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHH
Q psy9589          79 PNLYYLCLSGCSQLTDASL--IVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATL  149 (163)
Q Consensus        79 ~~L~~L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~  149 (163)
                      ++|++|+++++ .++....  ..+....+.|+.|++++| .++.-. ..+. .+++|+.|++++| .++....
T Consensus       180 ~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp-~~l~-~l~~L~~L~L~~N-~l~~~~p  247 (571)
T 3cvr_A          180 ESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCREN-RITHIP-ENIL-SLDPTCTIILEDN-PLSSRIR  247 (571)
T ss_dssp             TTCCEEECCSS-CCSSCCCCC--------CCEEEECCSS-CCCCCC-GGGG-GSCTTEEEECCSS-SCCHHHH
T ss_pred             CCCCEEECcCC-CCCchhhHHHhhhcccccceEEecCCC-cceecC-HHHh-cCCCCCEEEeeCC-cCCCcCH
Confidence            56777777664 2331100  011112233377777764 454211 1122 3788888888887 6766443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.96  E-value=9.3e-05  Score=54.18  Aligned_cols=86  Identities=10%  Similarity=0.083  Sum_probs=44.6

Q ss_pred             HhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCC
Q psy9589          38 QRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQ  117 (163)
Q Consensus        38 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  117 (163)
                      ..+++|++|+|+++..++.....             .+..+++|++|+|+++ .++......+ ..+++|+.|+|+++ .
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~~~~-------------~~~~l~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~l~~N-~   91 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHLELR-------------DLRGLGELRNLTIVKS-GLRFVAPDAF-HFTPRLSRLNLSFN-A   91 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGG-------------GSCSCCCCSEEECCSS-CCCEECTTGG-GSCSCCCEEECCSS-C
T ss_pred             CCCCCeeEEEccCCCCCCCcChh-------------HhccccCCCEEECCCC-ccceeCHHHh-cCCcCCCEEeCCCC-c
Confidence            34566777777752244322100             1125677777777774 4543222222 26777777777773 4


Q ss_pred             CCHHHHHHHHHcCCCCCEEeccCC
Q psy9589         118 FTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus       118 i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      ++.-.. ......+ |+.|++.+|
T Consensus        92 l~~~~~-~~~~~~~-L~~l~l~~N  113 (347)
T 2ifg_A           92 LESLSW-KTVQGLS-LQELVLSGN  113 (347)
T ss_dssp             CSCCCS-TTTCSCC-CCEEECCSS
T ss_pred             cceeCH-HHcccCC-ceEEEeeCC
Confidence            443211 1112223 777777776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.35  E-value=0.00069  Score=49.51  Aligned_cols=66  Identities=15%  Similarity=0.111  Sum_probs=46.3

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCCh
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITD  146 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~  146 (163)
                      .+++|++|+|++.+.++......+. ++++|+.|+|+++ .++...- ..+.++++|++|+|++| .++.
T Consensus        29 ~~~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~   94 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLNLSFN-ALES   94 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEECCSS-CCSC
T ss_pred             CCCCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCC-ccceeCH-HHhcCCcCCCEEeCCCC-ccce
Confidence            5678999999863455543323333 7899999999985 5765332 23356899999999998 6653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.07  E-value=3.9e-05  Score=56.48  Aligned_cols=36  Identities=14%  Similarity=-0.001  Sum_probs=23.6

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCC
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS   52 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~   52 (163)
                      +++++|+|++|. ++...- .....+++|++|++++|.
T Consensus        30 ~~l~~L~Ls~N~-i~~i~~-~~f~~l~~L~~L~Ls~N~   65 (350)
T 4ay9_X           30 RNAIELRFVLTK-LRVIQK-GAFSGFGDLEKIEISQND   65 (350)
T ss_dssp             TTCSEEEEESCC-CSEECT-TSSTTCTTCCEEEEECCT
T ss_pred             CCCCEEEccCCc-CCCcCH-HHHcCCCCCCEEECcCCC
Confidence            578889998865 332111 122457889999998874

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=95.87  E-value=0.00022  Score=52.39  Aligned_cols=86  Identities=9%  Similarity=-0.013  Sum_probs=50.0

Q ss_pred             CCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCC
Q psy9589          40 CHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFT  119 (163)
Q Consensus        40 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~  119 (163)
                      .+++++|++++| .++.....             .+..+++|++|+|+++........ ..+.+++++..+.+.+++.++
T Consensus        29 ~~~l~~L~Ls~N-~i~~i~~~-------------~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~~N~l~   93 (350)
T 4ay9_X           29 PRNAIELRFVLT-KLRVIQKG-------------AFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLL   93 (350)
T ss_dssp             CTTCSEEEEESC-CCSEECTT-------------SSTTCTTCCEEEEECCTTCCEECT-TSBCSCTTCCEEEEEEETTCC
T ss_pred             CCCCCEEEccCC-cCCCcCHH-------------HHcCCCCCCEEECcCCCCCCccCh-hHhhcchhhhhhhcccCCccc
Confidence            468999999997 55432111             123688999999998642221111 112356777665554445555


Q ss_pred             HHHHHHHHHcCCCCCEEeccCC
Q psy9589         120 DTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus       120 ~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .-.- .....+++|++|++++|
T Consensus        94 ~l~~-~~f~~l~~L~~L~l~~n  114 (350)
T 4ay9_X           94 YINP-EAFQNLPNLQYLLISNT  114 (350)
T ss_dssp             EECT-TSBCCCTTCCEEEEEEE
T ss_pred             ccCc-hhhhhcccccccccccc
Confidence            3221 12245678888888776

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.09  E-value=0.0077  Score=44.83  Aligned_cols=120  Identities=17%  Similarity=0.226  Sum_probs=64.6

Q ss_pred             cCCCCcEEeecCCCC-CChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          13 NCPNLYYLCLSGCSQ-LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~-~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      .|++|+.+.+..... +.+    .....|++|+.+.+..  .++..+-.             .+..|++|+.+.+..  .
T Consensus       263 ~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~--~i~~I~~~-------------aF~~c~~L~~i~lp~--~  321 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSS--RITELPES-------------VFAGCISLKSIDIPE--G  321 (394)
T ss_dssp             TCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCT--TCCEECTT-------------TTTTCTTCCEEECCT--T
T ss_pred             ecccccEEecccccceecC----cccccccccccccCCC--cccccCce-------------eecCCCCcCEEEeCC--c
Confidence            467777777765321 222    1234578888888864  23222111             123678889888854  2


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      ++.-+-.++ .+|.+|+++.|..  .++.-+-. .+.+|++|+.+++..+ ..   .. .-+..|..|+.+
T Consensus       322 v~~I~~~aF-~~C~~L~~i~ip~--sv~~I~~~-aF~~C~~L~~i~~~~~-~~---~~-~~~~~~~~L~~i  383 (394)
T 4gt6_A          322 ITQILDDAF-AGCEQLERIAIPS--SVTKIPES-AFSNCTALNNIEYSGS-RS---QW-NAISTDSGLQNL  383 (394)
T ss_dssp             CCEECTTTT-TTCTTCCEEEECT--TCCBCCGG-GGTTCTTCCEEEESSC-HH---HH-HTCBCCCCC---
T ss_pred             ccEehHhHh-hCCCCCCEEEECc--ccCEEhHh-HhhCCCCCCEEEECCc-ee---eh-hhhhccCCCCEE
Confidence            322222222 3788999998854  23332222 2356888999988874 21   12 223466666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.87  E-value=0.0015  Score=49.06  Aligned_cols=13  Identities=31%  Similarity=0.733  Sum_probs=7.9

Q ss_pred             HcCCCCCEEeccC
Q psy9589         128 RNCRLLAKMDLEE  140 (163)
Q Consensus       128 ~~~~~L~~L~l~~  140 (163)
                      .+|++|+.+.+..
T Consensus       297 ~~c~~L~~l~l~~  309 (401)
T 4fdw_A          297 EGCPKLARFEIPE  309 (401)
T ss_dssp             TTCTTCCEECCCT
T ss_pred             hCCccCCeEEeCC
Confidence            4466666666664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=92.78  E-value=0.02  Score=43.02  Aligned_cols=58  Identities=17%  Similarity=0.278  Sum_probs=26.2

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .|++|+.+.+..  .+..-+-.++ .+|++|+.+.|..  +++.-+-.+ +.+| +|+.+++.++
T Consensus       298 ~c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          298 GCPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVEGT  355 (401)
T ss_dssp             TCTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEECCS
T ss_pred             CCccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEcCC
Confidence            455666666543  1222111222 2566666666643  233212111 2335 6666666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.05  E-value=0.017  Score=42.93  Aligned_cols=100  Identities=18%  Similarity=0.355  Sum_probs=60.8

Q ss_pred             HhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCC
Q psy9589          38 QRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQ  117 (163)
Q Consensus        38 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  117 (163)
                      ..|++|+.+.+...  +...+-.             .+..|+.|+.+.+..  .+..-+-.. +.+|++|+++.|..  .
T Consensus       262 ~~c~~L~~i~lp~~--~~~I~~~-------------aF~~c~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~--~  321 (394)
T 4gt6_A          262 DSCAYLASVKMPDS--VVSIGTG-------------AFMNCPALQDIEFSS--RITELPESV-FAGCISLKSIDIPE--G  321 (394)
T ss_dssp             TTCSSCCEEECCTT--CCEECTT-------------TTTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCEEECCT--T
T ss_pred             eecccccEEecccc--cceecCc-------------ccccccccccccCCC--cccccCcee-ecCCCCcCEEEeCC--c
Confidence            45788888888653  2211111             123678899998864  233222222 34799999999964  3


Q ss_pred             CCHHHHHHHHHcCCCCCEEeccCC-CCCChHHHHHHHhCCCCCccC
Q psy9589         118 FTDTGFQALARNCRLLAKMDLEEC-VLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus       118 i~~~~~~~l~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      ++.-+-. .+.+|.+|+.+.+..+ ..|.+.    .+.+|++|+++
T Consensus       322 v~~I~~~-aF~~C~~L~~i~ip~sv~~I~~~----aF~~C~~L~~i  362 (394)
T 4gt6_A          322 ITQILDD-AFAGCEQLERIAIPSSVTKIPES----AFSNCTALNNI  362 (394)
T ss_dssp             CCEECTT-TTTTCTTCCEEEECTTCCBCCGG----GGTTCTTCCEE
T ss_pred             ccEehHh-HhhCCCCCCEEEECcccCEEhHh----HhhCCCCCCEE
Confidence            4432222 3356899999999763 234343    35789999865

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.08  E-value=0.0084  Score=44.64  Aligned_cols=75  Identities=13%  Similarity=0.208  Sum_probs=42.8

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGC  156 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  156 (163)
                      .|++|+.+++..  .+..-+-.++ .+|.+|+.+.|..  +++.-+-. ...+|++|+.+++..+  ++..  ...+..|
T Consensus       318 ~c~~L~~i~lp~--~v~~I~~~aF-~~c~~L~~i~lp~--~l~~I~~~-aF~~C~~L~~i~lp~~--~~~~--~~~F~~c  387 (394)
T 4fs7_A          318 SCTSLVSIDLPY--LVEEIGKRSF-RGCTSLSNINFPL--SLRKIGAN-AFQGCINLKKVELPKR--LEQY--RYDFEDT  387 (394)
T ss_dssp             TCTTCCEECCCT--TCCEECTTTT-TTCTTCCEECCCT--TCCEECTT-TBTTCTTCCEEEEEGG--GGGG--GGGBCTT
T ss_pred             CCCCCCEEEeCC--cccEEhHHhc-cCCCCCCEEEECc--cccEehHH-HhhCCCCCCEEEECCC--CEEh--hheecCC
Confidence            577888888754  2332222233 3788888888854  24332222 2356888888888763  3221  2235677


Q ss_pred             CCCcc
Q psy9589         157 PRLEK  161 (163)
Q Consensus       157 ~~L~~  161 (163)
                      ++|+.
T Consensus       388 ~~L~~  392 (394)
T 4fs7_A          388 TKFKW  392 (394)
T ss_dssp             CEEEE
T ss_pred             CCCcE
Confidence            77765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=91.02  E-value=0.043  Score=40.40  Aligned_cols=12  Identities=8%  Similarity=0.254  Sum_probs=6.3

Q ss_pred             hCCcCCEEEecC
Q psy9589          39 RCHQLHTLEVAS   50 (163)
Q Consensus        39 ~~~~L~~L~l~~   50 (163)
                      .|.+|+.+.+..
T Consensus       238 ~~~~L~~i~lp~  249 (379)
T 4h09_A          238 GMKALDEIAIPK  249 (379)
T ss_dssp             TCSSCCEEEECT
T ss_pred             CCccceEEEcCC
Confidence            355555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=86.93  E-value=0.11  Score=38.29  Aligned_cols=104  Identities=17%  Similarity=0.325  Sum_probs=60.7

Q ss_pred             cCCCCcEEeecCCC-CCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          13 NCPNLYYLCLSGCS-QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        13 ~~~~L~~L~l~~~~-~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      .+.+|+.+.+.... .+.+    .....|.+|+.+.+...  +...+..             .+..|++|+.+.+.+. .
T Consensus       238 ~~~~L~~i~lp~~v~~I~~----~aF~~~~~l~~i~l~~~--i~~i~~~-------------aF~~c~~L~~i~l~~~-~  297 (379)
T 4h09_A          238 GMKALDEIAIPKNVTSIGS----FLLQNCTALKTLNFYAK--VKTVPYL-------------LCSGCSNLTKVVMDNS-A  297 (379)
T ss_dssp             TCSSCCEEEECTTCCEECT----TTTTTCTTCCEEEECCC--CSEECTT-------------TTTTCTTCCEEEECCT-T
T ss_pred             CCccceEEEcCCCccEeCc----cccceeehhcccccccc--ceecccc-------------cccccccccccccccc-c
Confidence            46777777776532 1222    23356888999998753  3322111             1236889999998652 2


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccC
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEE  140 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~  140 (163)
                      +..-+-.+ +.+|++|+++.|..  .++.-+-.+ ..+|++|+.+.+..
T Consensus       298 i~~I~~~a-F~~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~ip~  342 (379)
T 4h09_A          298 IETLEPRV-FMDCVKLSSVTLPT--ALKTIQVYA-FKNCKALSTISYPK  342 (379)
T ss_dssp             CCEECTTT-TTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCCCCCCT
T ss_pred             cceehhhh-hcCCCCCCEEEcCc--cccEEHHHH-hhCCCCCCEEEECC
Confidence            32222222 24789999999964  244322222 35688899888865

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=80.68  E-value=0.35  Score=35.82  Aligned_cols=98  Identities=13%  Similarity=0.228  Sum_probs=57.6

Q ss_pred             cCCCCcEEeecCCC-CCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          13 NCPNLYYLCLSGCS-QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        13 ~~~~L~~L~l~~~~-~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      .+++|+.+.+.... .+.+.    ....|++|+.++|...  ++..+-.             .+..|.+|+.+.+...  
T Consensus       295 ~~~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~--v~~I~~~-------------aF~~c~~L~~i~lp~~--  353 (394)
T 4fs7_A          295 GCSSLTEVKLLDSVKFIGEE----AFESCTSLVSIDLPYL--VEEIGKR-------------SFRGCTSLSNINFPLS--  353 (394)
T ss_dssp             TCTTCCEEEECTTCCEECTT----TTTTCTTCCEECCCTT--CCEECTT-------------TTTTCTTCCEECCCTT--
T ss_pred             ccccccccccccccceechh----hhcCCCCCCEEEeCCc--ccEEhHH-------------hccCCCCCCEEEECcc--
Confidence            56788888886532 12332    2356889999998643  3322211             1237899999999652  


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEE
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKM  136 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L  136 (163)
                      +..-+-.++ .+|++|+.+.+..  .++...  ....+|++|+.+
T Consensus       354 l~~I~~~aF-~~C~~L~~i~lp~--~~~~~~--~~F~~c~~L~~I  393 (394)
T 4fs7_A          354 LRKIGANAF-QGCINLKKVELPK--RLEQYR--YDFEDTTKFKWI  393 (394)
T ss_dssp             CCEECTTTB-TTCTTCCEEEEEG--GGGGGG--GGBCTTCEEEEE
T ss_pred             ccEehHHHh-hCCCCCCEEEECC--CCEEhh--heecCCCCCcEE
Confidence            332222333 4899999999965  233222  123456777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.88
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.85
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.46
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.4
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.33
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.27
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.23
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.11
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.83
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.82
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.77
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.55
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.3
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.28
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.26
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.21
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.19
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.03
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.02
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.99
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.98
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.73
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.46
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.29
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.82
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.53
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.3
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.26
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	94.13

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.2e-22  Score=143.81  Aligned_cols=143  Identities=27%  Similarity=0.399  Sum_probs=71.6

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhc-C---------------CHHHHHHHHh
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARG-L---------------LDSAVLSLAE   76 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~---------------~~~~~~~~~~   76 (163)
                      ++++|++|++++|..+++.++..+...||+|++|++++|..+++.++...... +               ++.++..+++
T Consensus        93 ~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~  172 (284)
T d2astb2          93 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR  172 (284)
T ss_dssp             TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred             cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccc
Confidence            45666666666655566666666666666666666666655655554433221 1               2344444444


Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGC  156 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  156 (163)
                      .||+|++|++++|..+++.++..+. ++|+|++|++++|..+++.++..+. .+|+|+.|++++|  ++++++..+.+.|
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~~~l~~L~-~~~~L~~L~l~~~--~~d~~l~~l~~~l  248 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTLQLLKEAL  248 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCTTCHHHHHHHS
T ss_pred             ccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCChHHHHHHh-cCCCCCEEeeeCC--CCHHHHHHHHHhC
Confidence            4455555555444444444444443 4455555555554444444443332 2445555555443  3444444444444


Q ss_pred             CCC
Q psy9589         157 PRL  159 (163)
Q Consensus       157 ~~L  159 (163)
                      |+|
T Consensus       249 p~L  251 (284)
T d2astb2         249 PHL  251 (284)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.1e-21  Score=135.56  Aligned_cols=153  Identities=27%  Similarity=0.441  Sum_probs=110.6

Q ss_pred             hHHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC--------------CHHHH
Q psy9589           6 TVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL--------------LDSAV   71 (163)
Q Consensus         6 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--------------~~~~~   71 (163)
                      .+..+..+|++|++|++++|. +++..+..+.. +++|++|++++|..+++.++..++..+              ++.++
T Consensus        62 ~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l~~-~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~  139 (284)
T d2astb2          62 TLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV  139 (284)
T ss_dssp             HHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH
T ss_pred             HHHHHHHhCCCcccccccccC-CCcHHHHHHhc-CCCCcCccccccccccccccchhhHHHHhccccccccccccccccc
Confidence            355677889999999999874 78888877654 899999999999899998888877655              34555


Q ss_pred             HHH-HhcCCCCceEecCCC-CCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHH
Q psy9589          72 LSL-AENCPNLYYLCLSGC-SQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATL  149 (163)
Q Consensus        72 ~~~-~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~  149 (163)
                      ... ...+++|++|+++++ ..+++.++..++.+||+|++|++++|..+++.++..+. .+++|++|++++|..+++.++
T Consensus       140 ~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~~~l  218 (284)
T d2astb2         140 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETL  218 (284)
T ss_dssp             HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGG
T ss_pred             hhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCChHHH
Confidence            443 334567777777765 34677777777767777777777777777776665554 367777777777777777666


Q ss_pred             HHHHhCCCCCccC
Q psy9589         150 IHLALGCPRLEKL  162 (163)
Q Consensus       150 ~~l~~~~~~L~~L  162 (163)
                      ..+. .+|+|+.|
T Consensus       219 ~~L~-~~~~L~~L  230 (284)
T d2astb2         219 LELG-EIPTLKTL  230 (284)
T ss_dssp             GGGG-GCTTCCEE
T ss_pred             HHHh-cCCCCCEE
Confidence            5553 56777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.46  E-value=2.7e-12  Score=84.10  Aligned_cols=129  Identities=15%  Similarity=0.199  Sum_probs=103.7

Q ss_pred             hhHHhHHHHHhcCCCCcEEeecCCCCCChHHHHHHHH---hCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcC
Q psy9589           2 DIFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENC   78 (163)
Q Consensus         2 d~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   78 (163)
                      |+-+.+..+....|+|++|+|+++..+++..+..++.   ..++|++|++++| .+++.+...++.         ..+..
T Consensus         2 dv~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~---------~L~~n   71 (167)
T d1pgva_           2 DVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIE---------LIETS   71 (167)
T ss_dssp             CHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHH---------HHHHC
T ss_pred             CHHHHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhh---------hhhhc
Confidence            6778889999999999999999876789988887665   4677999999997 788887777654         33467


Q ss_pred             CCCceEecCCCCCCCHHHHHHHHHhC---CCCCEEEecCC--CCCCHHHHHHHH---HcCCCCCEEeccCC
Q psy9589          79 PNLYYLCLSGCSQLTDASLIVLAQRC---HQLHTLEVASC--SQFTDTGFQALA---RNCRLLAKMDLEEC  141 (163)
Q Consensus        79 ~~L~~L~l~~~~~~~~~~~~~l~~~~---~~L~~L~l~~~--~~i~~~~~~~l~---~~~~~L~~L~l~~~  141 (163)
                      +.|++|+++++ .+++.++..++..+   +.|++|++.++  ..+.+++...++   ...+.|+.|+++++
T Consensus        72 ~~L~~L~L~~n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          72 PSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             SSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             ccccceeeehh-hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            89999999996 79999998887654   77999999874  246666654444   44799999999886

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.3e-13  Score=97.68  Aligned_cols=126  Identities=21%  Similarity=0.303  Sum_probs=104.4

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTD   94 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   94 (163)
                      ++|++|++++ ..+++..+..+...+++++.|+|++| .+++.++..++.         ..+.+|+|++|+++++ .+++
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~---------~L~~~~~L~~LdLs~N-~i~~   69 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISS---------ALRVNPALAELNLRSN-ELGD   69 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHH---------HHHTCTTCCEEECTTC-CCHH
T ss_pred             CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHH---------HHhcCCCCCEEECcCC-cCCh
Confidence            5789999977 66899999999999999999999998 689888777654         3457899999999985 6889


Q ss_pred             HHHHHHHHhC----CCCCEEEecCCCCCCHHHHHHHHH---cCCCCCEEeccCCCCCChHHHHHHHh
Q psy9589          95 ASLIVLAQRC----HQLHTLEVASCSQFTDTGFQALAR---NCRLLAKMDLEECVLITDATLIHLAL  154 (163)
Q Consensus        95 ~~~~~l~~~~----~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~  154 (163)
                      .++..++..+    ++|++|++++| .+++.++..+++   .+++|++|++++| .+++.++..+..
T Consensus        70 ~~~~~l~~~l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N-~i~~~~~~~l~~  134 (460)
T d1z7xw1          70 VGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCE  134 (460)
T ss_dssp             HHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCEEECCCC-Cccccccccccchhhccccccccccccc-cchhhhhhhhhh
Confidence            9988888654    57999999997 599888766654   4789999999998 888877666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=7.6e-12  Score=90.48  Aligned_cols=55  Identities=15%  Similarity=0.148  Sum_probs=35.6

Q ss_pred             hHHHHHhcCCCCcEEeecCCCCCChHHHH---HHHHhCCcCCEEEecCCCCCChHHHHHH
Q psy9589           6 TVLSLAENCPNLYYLCLSGCSQLTDASLI---VLAQRCHQLHTLEVASCSQFTDTGFQAL   62 (163)
Q Consensus         6 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~---~i~~~~~~L~~L~l~~~~~~~~~~~~~l   62 (163)
                      .+......+++|++|++++|. +++..+.   .....+++|++|++++| .+++.+...+
T Consensus        84 ~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n-~l~~~~~~~l  141 (344)
T d2ca6a1          84 LLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKI  141 (344)
T ss_dssp             HHHHHHTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHH
T ss_pred             HHHHHHhhCCCcccccccccc-cccccccchhhhhcccccchheecccc-cccccccccc
Confidence            344455668888888888865 4444433   34456788888888887 4555554444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.40  E-value=3.7e-11  Score=78.37  Aligned_cols=130  Identities=15%  Similarity=0.127  Sum_probs=103.5

Q ss_pred             HhHHHHHhcCCCCcEEeecCCCCCChHHHHHHHH---hCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCC
Q psy9589           5 ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNL   81 (163)
Q Consensus         5 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L   81 (163)
                      +.+..+....|+|++|+++++..+++..+..++.   ..++|++|++++| .+++.+...++.         ..+..+.+
T Consensus         7 ~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~---------~l~~~~~l   76 (166)
T d1io0a_           7 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAE---------MLKVNNTL   76 (166)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHH---------HHHHCSSC
T ss_pred             HHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHH---------HHhhcccc
Confidence            3456677788999999999877799999888775   6789999999998 888888877754         34567899


Q ss_pred             ceEecCCCCCCCHHHHHHHHH---hCCCCCEEEecCC-CCCCHHHHHHHHH---cCCCCCEEeccCCCCCCh
Q psy9589          82 YYLCLSGCSQLTDASLIVLAQ---RCHQLHTLEVASC-SQFTDTGFQALAR---NCRLLAKMDLEECVLITD  146 (163)
Q Consensus        82 ~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~-~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~  146 (163)
                      +.++++++ .+++.++..++.   ..++|+.++|+.+ +.+++++...+++   .+++|+.|+++.+ ...+
T Consensus        77 ~~l~l~~~-~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~-~~~~  146 (166)
T d1io0a_          77 KSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGP  146 (166)
T ss_dssp             CEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHH
T ss_pred             hhhhhccc-cccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC-CCcH
Confidence            99999985 688998888874   4588999888653 4688887666654   6899999999886 4433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.5e-11  Score=89.85  Aligned_cols=141  Identities=25%  Similarity=0.265  Sum_probs=87.1

Q ss_pred             HHhcCCCCcEEeecCCCCCChHHHHH---HHHhCCcCCEEEecCCCCCChHHHHHHHhcC--------------------
Q psy9589          10 LAENCPNLYYLCLSGCSQLTDASLIV---LAQRCHQLHTLEVASCSQFTDTGFQALARGL--------------------   66 (163)
Q Consensus        10 ~~~~~~~L~~L~l~~~~~~~~~~l~~---i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--------------------   66 (163)
                      .....+.++.+++++|.. .......   .....+.++.++++++ .+++.++..++...                    
T Consensus       250 ~~~~~~~l~~l~l~~n~i-~~~~~~~~~~~l~~~~~l~~l~l~~n-~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~  327 (460)
T d1z7xw1         250 LLHPSSRLRTLWIWECGI-TAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA  327 (460)
T ss_dssp             HTSTTCCCCEEECTTSCC-CHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             cccccccccccccccccc-cccccccccccccccccccccccccc-cccccccchhhccccccccccccccccccchhhh
Confidence            334456677777766543 3333222   2234566666666664 45555555554321                    


Q ss_pred             CHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHh----CCCCCEEEecCCCCCCHHHHHHHH---HcCCCCCEEecc
Q psy9589          67 LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQR----CHQLHTLEVASCSQFTDTGFQALA---RNCRLLAKMDLE  139 (163)
Q Consensus        67 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~L~~L~l~  139 (163)
                      ....+..+...++.|++|+++++ .+++.++..++..    .+.|++|++++| .+++.++..++   ..+++|++|+++
T Consensus       328 ~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls  405 (460)
T d1z7xw1         328 CCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLS  405 (460)
T ss_dssp             GHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred             hhhhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECC
Confidence            12223334456778888888874 6777777766542    456888888886 58887766654   346888888888


Q ss_pred             CCCCCChHHHHHHHhC
Q psy9589         140 ECVLITDATLIHLALG  155 (163)
Q Consensus       140 ~~~~l~~~~~~~l~~~  155 (163)
                      +| .++++++..+.+.
T Consensus       406 ~N-~i~~~g~~~l~~~  420 (460)
T d1z7xw1         406 NN-CLGDAGILQLVES  420 (460)
T ss_dssp             SS-SCCHHHHHHHHHH
T ss_pred             CC-cCCHHHHHHHHHH
Confidence            87 8888777666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.33  E-value=3.8e-11  Score=86.71  Aligned_cols=151  Identities=17%  Similarity=0.178  Sum_probs=93.1

Q ss_pred             HHHHHhcCCCCcEEeecCCCCCChHHHHHHH------------HhCCcCCEEEecCCCCCChHHHHHHHhcC--------
Q psy9589           7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLA------------QRCHQLHTLEVASCSQFTDTGFQALARGL--------   66 (163)
Q Consensus         7 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~------------~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--------   66 (163)
                      +......+++|++|++++|. +++.....+.            ...+.|+.+.++++ .+++.++..++...        
T Consensus       113 l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         113 LIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCE
T ss_pred             hhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeecccc-cccccccccccchhhhhhhhcc
Confidence            33444456777777777654 3443332221            23456666666664 55555554443321        


Q ss_pred             --------CHHHHHH----HHhcCCCCceEecCCCCCCCHHHHHHHH---HhCCCCCEEEecCCCCCCHHHHHHHHHc--
Q psy9589          67 --------LDSAVLS----LAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTDTGFQALARN--  129 (163)
Q Consensus        67 --------~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~i~~~~~~~l~~~--  129 (163)
                              .++++..    ....+++|++|+++++ .+++.+...++   ..+++|++|+|++| .+++.++..+++.  
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~  268 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFS  268 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHH
T ss_pred             cccccccccccccccchhhhhcchhhhcccccccc-cccccccccccccccccccchhhhhhcC-ccCchhhHHHHHHhh
Confidence                    2333322    2346788899998874 57777766654   35788899999886 5888877766542  


Q ss_pred             ---CCCCCEEeccCCCCCChHHHHHHHh----CCCCCccC
Q psy9589         130 ---CRLLAKMDLEECVLITDATLIHLAL----GCPRLEKL  162 (163)
Q Consensus       130 ---~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L  162 (163)
                         .+.|++|++++| .++++++..+.+    .+++|+.|
T Consensus       269 ~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L  307 (344)
T d2ca6a1         269 KLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFL  307 (344)
T ss_dssp             TCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred             hccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEE
Confidence               357888999987 788877655543    45667655

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.27  E-value=1.1e-10  Score=76.14  Aligned_cols=122  Identities=13%  Similarity=0.189  Sum_probs=94.2

Q ss_pred             hHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHH---hCCC
Q psy9589          30 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQ  106 (163)
Q Consensus        30 ~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~  106 (163)
                      +..++.+....|.|++|+|+++..+++.++..++.         .....+.|++|+++++ .+++.+...++.   ..+.
T Consensus         4 ~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~---------~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~   73 (167)
T d1pgva_           4 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIE---------AACNSKHIEKFSLANT-AISDSEARGLIELIETSPS   73 (167)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHH---------HHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSS
T ss_pred             HHHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHH---------HHhhCCccceeecccc-ccchhHHHHHhhhhhhccc
Confidence            45677888889999999999877899988877754         2346789999999995 688887766653   5789


Q ss_pred             CCEEEecCCCCCCHHHHHHHHHc---CCCCCEEeccCCC--CCChHH---HHHHHhCCCCCccC
Q psy9589         107 LHTLEVASCSQFTDTGFQALARN---CRLLAKMDLEECV--LITDAT---LIHLALGCPRLEKL  162 (163)
Q Consensus       107 L~~L~l~~~~~i~~~~~~~l~~~---~~~L~~L~l~~~~--~l~~~~---~~~l~~~~~~L~~L  162 (163)
                      |++|+|++| .+++.++..+++.   .++|++|+++++.  .+++.+   +....+..+.|++|
T Consensus        74 L~~L~L~~n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l  136 (167)
T d1pgva_          74 LRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRV  136 (167)
T ss_dssp             CCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred             ccceeeehh-hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEe
Confidence            999999996 7999998888665   4789999999862  455554   34444567777655

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.23  E-value=3.4e-10  Score=73.67  Aligned_cols=122  Identities=16%  Similarity=0.195  Sum_probs=94.7

Q ss_pred             hHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHH---hCCC
Q psy9589          30 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQ  106 (163)
Q Consensus        30 ~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~  106 (163)
                      +..+..+....|.|++|+++++..+++.++..++.         ..+..++|++|+++++ .+++.+...++.   ..+.
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~---------al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~   75 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAE---------ALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNT   75 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHH---------HHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHH---------HHhcCCccCeeeccCC-cccHHHHHHHHHHHhhccc
Confidence            45667788889999999999877899998887765         2346789999999996 788888877654   4689


Q ss_pred             CCEEEecCCCCCCHHHHHHHHHc---CCCCCEEeccCC-CCCChHHHHHHH---hCCCCCccC
Q psy9589         107 LHTLEVASCSQFTDTGFQALARN---CRLLAKMDLEEC-VLITDATLIHLA---LGCPRLEKL  162 (163)
Q Consensus       107 L~~L~l~~~~~i~~~~~~~l~~~---~~~L~~L~l~~~-~~l~~~~~~~l~---~~~~~L~~L  162 (163)
                      ++.++++++ .++++++..+++.   .++|+.++++.+ ..+++++...++   +.++.|++|
T Consensus        76 l~~l~l~~~-~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L  137 (166)
T d1io0a_          76 LKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKF  137 (166)
T ss_dssp             CCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred             chhhhhccc-cccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEE
Confidence            999999985 6888888877654   688998777643 278887655554   477888765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=7.3e-12  Score=81.59  Aligned_cols=127  Identities=13%  Similarity=0.099  Sum_probs=85.5

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL   92 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   92 (163)
                      .+.+|++|++++|.. +..  +.+...+++|++|++++| .++.-.  .             ...+++|++|+++++. +
T Consensus        16 n~~~lr~L~L~~n~I-~~i--~~~~~~l~~L~~L~Ls~N-~i~~l~--~-------------~~~l~~L~~L~ls~N~-i   75 (162)
T d1a9na_          16 NAVRDRELDLRGYKI-PVI--ENLGATLDQFDAIDFSDN-EIRKLD--G-------------FPLLRRLKTLLVNNNR-I   75 (162)
T ss_dssp             CTTSCEEEECTTSCC-CSC--CCGGGGTTCCSEEECCSS-CCCEEC--C-------------CCCCSSCCEEECCSSC-C
T ss_pred             CcCcCcEEECCCCCC-Ccc--CccccccccCCEEECCCC-CCCccC--C-------------cccCcchhhhhccccc-c
Confidence            356899999999763 332  234466899999999998 454321  0             1267899999999964 5


Q ss_pred             CHHHHHHHHHhCCCCCEEEecCCCCCCHH-HHHHHHHcCCCCCEEeccCCCCCChH-H-HHHHHhCCCCCccCC
Q psy9589          93 TDASLIVLAQRCHQLHTLEVASCSQFTDT-GFQALARNCRLLAKMDLEECVLITDA-T-LIHLALGCPRLEKLI  163 (163)
Q Consensus        93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~~l~~~-~-~~~l~~~~~~L~~L~  163 (163)
                      +... ..+...+++|+.|+++++ .+++- .+..+ ..+++|++|++++| .++.. . -..+...+|+|+.||
T Consensus        76 ~~l~-~~~~~~l~~L~~L~L~~N-~i~~~~~l~~l-~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          76 CRIG-EGLDQALPDLTELILTNN-SLVELGDLDPL-ASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEC-SCHHHHCTTCCEEECCSC-CCCCGGGGGGG-GGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cCCC-ccccccccccccceeccc-ccccccccccc-ccccccchhhcCCC-ccccccchHHHHHHHCCCcCeeC
Confidence            4322 123347999999999985 45542 33333 56899999999998 55442 1 123456889999876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.83  E-value=1.7e-10  Score=77.37  Aligned_cols=127  Identities=16%  Similarity=0.091  Sum_probs=81.0

Q ss_pred             HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChH-HHHHHHhcCCHHHHHHHHhcCCCCceEecCCC
Q psy9589          11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDT-GFQALARGLLDSAVLSLAENCPNLYYLCLSGC   89 (163)
Q Consensus        11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   89 (163)
                      ...+++|++|++++|. +++-  .. ...+++|++|++++| .++.. ++.               ..+++|++|+++++
T Consensus        44 l~~L~~L~~L~Ls~n~-I~~i--~~-l~~l~~L~~L~Ls~N-~i~~i~~~~---------------~~~~~L~~L~l~~N  103 (198)
T d1m9la_          44 LSTLKACKHLALSTNN-IEKI--SS-LSGMENLRILSLGRN-LIKKIENLD---------------AVADTLEELWISYN  103 (198)
T ss_dssp             HHHTTTCCEEECSEEE-ESCC--CC-HHHHTTCCEEECCEE-EECSCSSHH---------------HHHHHCCEEECSEE
T ss_pred             HhcccccceeECcccC-CCCc--cc-ccCCccccChhhccc-ccccccccc---------------cccccccccccccc
Confidence            3458899999998864 3331  11 345889999999987 34321 111               12357889999885


Q ss_pred             CCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHH---------HHHHHhCCCCCc
Q psy9589          90 SQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDAT---------LIHLALGCPRLE  160 (163)
Q Consensus        90 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~---------~~~l~~~~~~L~  160 (163)
                       .++..  ..+. .+++|+.|+++++ .+++-.-......+++|++|++++| .+....         ...+...+|+|+
T Consensus       104 -~i~~l--~~~~-~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~r~~vi~~lp~L~  177 (198)
T d1m9la_         104 -QIASL--SGIE-KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             -ECCCH--HHHH-HHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSS-HHHHHHCTTTTHHHHHHHHHHHCSSCC
T ss_pred             -ccccc--cccc-ccccccccccccc-hhccccccccccCCCccceeecCCC-ccccCcccccchhhHHHHHHHHCCCcC
Confidence             45542  3333 6788999999874 5665332223356889999999987 443211         123456788888


Q ss_pred             cCC
Q psy9589         161 KLI  163 (163)
Q Consensus       161 ~L~  163 (163)
                      .||
T Consensus       178 ~LD  180 (198)
T d1m9la_         178 KLD  180 (198)
T ss_dssp             EES
T ss_pred             EeC
Confidence            876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=2.5e-10  Score=70.89  Aligned_cols=119  Identities=17%  Similarity=0.140  Sum_probs=76.7

Q ss_pred             cEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHH
Q psy9589          18 YYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASL   97 (163)
Q Consensus        18 ~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~   97 (163)
                      |.|+++++.. ++-.  . ...+++|++|++++| .++.-. ..             ...+++|+.|+++++ .+++.  
T Consensus         1 R~L~Ls~n~l-~~l~--~-l~~l~~L~~L~ls~N-~l~~lp-~~-------------~~~l~~L~~L~l~~N-~i~~l--   58 (124)
T d1dcea3           1 RVLHLAHKDL-TVLC--H-LEQLLLVTHLDLSHN-RLRALP-PA-------------LAALRCLEVLQASDN-ALENV--   58 (124)
T ss_dssp             SEEECTTSCC-SSCC--C-GGGGTTCCEEECCSS-CCCCCC-GG-------------GGGCTTCCEEECCSS-CCCCC--
T ss_pred             CEEEcCCCCC-CCCc--c-cccCCCCCEEECCCC-ccCcch-hh-------------hhhhhcccccccccc-ccccc--
Confidence            5788888653 3321  2 356889999999987 444210 00             126789999999985 45532  


Q ss_pred             HHHHHhCCCCCEEEecCCCCCCHH-HHHHHHHcCCCCCEEeccCCCCCChH--HHHHHHhCCCCCccC
Q psy9589          98 IVLAQRCHQLHTLEVASCSQFTDT-GFQALARNCRLLAKMDLEECVLITDA--TLIHLALGCPRLEKL  162 (163)
Q Consensus        98 ~~l~~~~~~L~~L~l~~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~~l~~~--~~~~l~~~~~~L~~L  162 (163)
                      ..+. .+++|+.|+++++ .+++- .+..+ ..+++|+.|++++| .++..  ....+...+|+|+.|
T Consensus        59 ~~~~-~l~~L~~L~l~~N-~i~~~~~~~~l-~~~~~L~~L~l~~N-~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          59 DGVA-NLPRLQELLLCNN-RLQQSAAIQPL-VSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             GGGT-TCSSCCEEECCSS-CCCSSSTTGGG-GGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred             Cccc-cccccCeEECCCC-ccCCCCCchhh-cCCCCCCEEECCCC-cCCcCccHHHHHHHHCcCcceE
Confidence            2333 7899999999884 56543 22333 45899999999997 55532  134556677887764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.77  E-value=6.7e-09  Score=69.24  Aligned_cols=134  Identities=21%  Similarity=0.168  Sum_probs=67.7

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC-------CHHHHHHHHhcCCCCceE
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL-------LDSAVLSLAENCPNLYYL   84 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~L~~L   84 (163)
                      ..+++|++|++++|...+...    ...+++|++|++++|......++..+....       ..... .....+++|+.|
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~~~----l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L  133 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRL  133 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEE
T ss_pred             ccCCCcCcCccccccccCccc----ccCCcccccccccccccccccccccccccccccccccccccc-cccchhhhhHHh
Confidence            356777777777764322222    245677777777776432222211110000       00000 012245566666


Q ss_pred             ecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589          85 CLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus        85 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      +++++. +..  +..+. .+++|+.|++.++ .+++-.  . ..++++|++|++++| ++++-  .. ...+++|++|
T Consensus       134 ~l~~n~-l~~--~~~l~-~~~~L~~L~l~~n-~l~~l~--~-l~~l~~L~~L~ls~N-~i~~i--~~-l~~L~~L~~L  199 (199)
T d2omxa2         134 ELSSNT-ISD--ISALS-GLTSLQQLNFSSN-QVTDLK--P-LANLTTLERLDISSN-KVSDI--SV-LAKLTNLESL  199 (199)
T ss_dssp             ECCSSC-CCC--CGGGT-TCTTCSEEECCSS-CCCCCG--G-GTTCTTCCEEECCSS-CCCCC--GG-GGGCTTCSEE
T ss_pred             hhhhhh-hcc--ccccc-ccccccccccccc-cccCCc--c-ccCCCCCCEEECCCC-CCCCC--cc-ccCCCCCCcC
Confidence            666542 322  11222 5667777777664 344321  1 245788888888887 67662  22 3577777764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.2e-09  Score=69.57  Aligned_cols=115  Identities=17%  Similarity=0.119  Sum_probs=77.9

Q ss_pred             HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589          11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS   90 (163)
Q Consensus        11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   90 (163)
                      ...+++|++|++++|. ++.-  .. ...+++|++|++++| .++....             .+...+|+|++|+++++.
T Consensus        37 ~~~l~~L~~L~Ls~N~-i~~l--~~-~~~l~~L~~L~ls~N-~i~~l~~-------------~~~~~l~~L~~L~L~~N~   98 (162)
T d1a9na_          37 GATLDQFDAIDFSDNE-IRKL--DG-FPLLRRLKTLLVNNN-RICRIGE-------------GLDQALPDLTELILTNNS   98 (162)
T ss_dssp             GGGTTCCSEEECCSSC-CCEE--CC-CCCCSSCCEEECCSS-CCCEECS-------------CHHHHCTTCCEEECCSCC
T ss_pred             ccccccCCEEECCCCC-CCcc--CC-cccCcchhhhhcccc-cccCCCc-------------cccccccccccceecccc
Confidence            3568999999999976 3331  11 356899999999998 4553211             122368999999999964


Q ss_pred             CCCH-HHHHHHHHhCCCCCEEEecCCCCCCHHH--HHHHHHcCCCCCEEeccCCCCCChHHH
Q psy9589          91 QLTD-ASLIVLAQRCHQLHTLEVASCSQFTDTG--FQALARNCRLLAKMDLEECVLITDATL  149 (163)
Q Consensus        91 ~~~~-~~~~~l~~~~~~L~~L~l~~~~~i~~~~--~~~l~~~~~~L~~L~l~~~~~l~~~~~  149 (163)
                       +.+ ..+..+. .+|+|++|++.+|+ ++...  -......+|+|+.||-.   .|++++-
T Consensus        99 -i~~~~~l~~l~-~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~---~i~~~er  154 (162)
T d1a9na_          99 -LVELGDLDPLA-SLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ---KVKLKER  154 (162)
T ss_dssp             -CCCGGGGGGGG-GCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE---ECCHHHH
T ss_pred             -ccccccccccc-cccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCC---CCCHHHH
Confidence             443 3444554 89999999999964 44322  12344568999999844   5666543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.69  E-value=1.2e-08  Score=68.05  Aligned_cols=53  Identities=26%  Similarity=0.296  Sum_probs=37.9

Q ss_pred             hcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEE
Q psy9589          76 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKM  136 (163)
Q Consensus        76 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L  136 (163)
                      ..+++|+.|++.++ .+++.  ..+. ++++|++|+++++ .+++-.  .+ .++++|++|
T Consensus       147 ~~~~~L~~L~l~~n-~l~~l--~~l~-~l~~L~~L~ls~N-~i~~i~--~l-~~L~~L~~L  199 (199)
T d2omxa2         147 SGLTSLQQLNFSSN-QVTDL--KPLA-NLTTLERLDISSN-KVSDIS--VL-AKLTNLESL  199 (199)
T ss_dssp             TTCTTCSEEECCSS-CCCCC--GGGT-TCTTCCEEECCSS-CCCCCG--GG-GGCTTCSEE
T ss_pred             cccccccccccccc-cccCC--cccc-CCCCCCEEECCCC-CCCCCc--cc-cCCCCCCcC
Confidence            36789999999986 45432  2333 7999999999996 577622  23 457888876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.68  E-value=2.3e-09  Score=72.92  Aligned_cols=76  Identities=20%  Similarity=0.246  Sum_probs=51.0

Q ss_pred             hcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhC
Q psy9589          76 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALG  155 (163)
Q Consensus        76 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~  155 (163)
                      ..+++|++|+++++. +.+.  ..+ ..+++|+.|+++++ .+++-  .. ..++++|++|++++| ++++-  .. .+.
T Consensus       148 ~~~~~L~~L~l~~n~-~~~~--~~l-~~l~~L~~L~Ls~n-~l~~l--~~-l~~l~~L~~L~Ls~N-~lt~i--~~-l~~  215 (227)
T d1h6ua2         148 AGLTNLQYLSIGNAQ-VSDL--TPL-ANLSKLTTLKADDN-KISDI--SP-LASLPNLIEVHLKNN-QISDV--SP-LAN  215 (227)
T ss_dssp             GGCTTCCEEECCSSC-CCCC--GGG-TTCTTCCEEECCSS-CCCCC--GG-GGGCTTCCEEECTTS-CCCBC--GG-GTT
T ss_pred             ccccccccccccccc-cccc--hhh-cccccceecccCCC-ccCCC--hh-hcCCCCCCEEECcCC-cCCCC--cc-ccc
Confidence            356788888888754 3321  122 37889999999885 56542  22 356899999999998 77762  22 457


Q ss_pred             CCCCccCC
Q psy9589         156 CPRLEKLI  163 (163)
Q Consensus       156 ~~~L~~L~  163 (163)
                      +++|+.|+
T Consensus       216 l~~L~~L~  223 (227)
T d1h6ua2         216 TSNLFIVT  223 (227)
T ss_dssp             CTTCCEEE
T ss_pred             CCCCCEEE
Confidence            88887764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.66  E-value=1.1e-08  Score=68.69  Aligned_cols=121  Identities=26%  Similarity=0.270  Sum_probs=68.1

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC-
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS-   90 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-   90 (163)
                      ..+++|++|++++|.. ++..  . ...+++|+.|++++| .++...  .+             ..+++|+.|+++++. 
T Consensus        65 ~~l~~L~~L~L~~n~i-~~l~--~-~~~l~~L~~L~l~~n-~i~~l~--~l-------------~~l~~L~~L~l~~~~~  124 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKL-TDIK--P-LANLKNLGWLFLDEN-KVKDLS--SL-------------KDLKKLKSLSLEHNGI  124 (210)
T ss_dssp             GGCTTCCEEECCSSCC-CCCG--G-GTTCTTCCEEECCSS-CCCCGG--GG-------------TTCTTCCEEECTTSCC
T ss_pred             hhCCCCCEEeCCCccc-cCcc--c-cccCccccccccccc-cccccc--cc-------------cccccccccccccccc
Confidence            4578888888877653 3311  1 135778888888776 444321  11             134455555554432 


Q ss_pred             --------------------CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHH
Q psy9589          91 --------------------QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLI  150 (163)
Q Consensus        91 --------------------~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~  150 (163)
                                          .+++.  .. ...+++|+.++++++ .+++-  .. ..++++|++|++++| .+++  +.
T Consensus       125 ~~~~~l~~l~~l~~l~~~~n~l~~~--~~-~~~l~~L~~l~l~~n-~l~~i--~~-l~~l~~L~~L~Ls~N-~i~~--l~  194 (210)
T d1h6ta2         125 SDINGLVHLPQLESLYLGNNKITDI--TV-LSRLTKLDTLSLEDN-QISDI--VP-LAGLTKLQNLYLSKN-HISD--LR  194 (210)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS-CCCB--CG
T ss_pred             ccccccccccccccccccccccccc--cc-ccccccccccccccc-ccccc--cc-ccCCCCCCEEECCCC-CCCC--Ch
Confidence                                12211  11 125677777777764 34431  12 245788999999988 6765  22


Q ss_pred             HHHhCCCCCccCC
Q psy9589         151 HLALGCPRLEKLI  163 (163)
Q Consensus       151 ~l~~~~~~L~~L~  163 (163)
                      . ...+++|+.|+
T Consensus       195 ~-l~~l~~L~~L~  206 (210)
T d1h6ta2         195 A-LAGLKNLDVLE  206 (210)
T ss_dssp             G-GTTCTTCSEEE
T ss_pred             h-hcCCCCCCEEE
Confidence            2 35777887763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.55  E-value=2e-08  Score=61.99  Aligned_cols=104  Identities=17%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|++|++++|.. +.-.  .....+++|+.|++++| .++...  .             ...+|+|++|+++++ .
T Consensus        17 ~~l~~L~~L~ls~N~l-~~lp--~~~~~l~~L~~L~l~~N-~i~~l~--~-------------~~~l~~L~~L~l~~N-~   76 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRL-RALP--PALAALRCLEVLQASDN-ALENVD--G-------------VANLPRLQELLLCNN-R   76 (124)
T ss_dssp             GGGTTCCEEECCSSCC-CCCC--GGGGGCTTCCEEECCSS-CCCCCG--G-------------GTTCSSCCEEECCSS-C
T ss_pred             ccCCCCCEEECCCCcc-Ccch--hhhhhhhcccccccccc-cccccC--c-------------cccccccCeEECCCC-c
Confidence            4689999999999763 3311  12356999999999997 554321  1             126899999999995 4


Q ss_pred             CCHH-HHHHHHHhCCCCCEEEecCCCCCCHH--HHHHHHHcCCCCCEEe
Q psy9589          92 LTDA-SLIVLAQRCHQLHTLEVASCSQFTDT--GFQALARNCRLLAKMD  137 (163)
Q Consensus        92 ~~~~-~~~~l~~~~~~L~~L~l~~~~~i~~~--~~~~l~~~~~~L~~L~  137 (163)
                      +++. .+..+. .+++|+.|+++++ .++..  ....+...+|+|+.|.
T Consensus        77 i~~~~~~~~l~-~~~~L~~L~l~~N-~i~~~~~~~~~l~~~lp~L~~Ll  123 (124)
T d1dcea3          77 LQQSAAIQPLV-SCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL  123 (124)
T ss_dssp             CCSSSTTGGGG-GCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             cCCCCCchhhc-CCCCCCEEECCCC-cCCcCccHHHHHHHHCcCcceEe
Confidence            5433 334444 7999999999984 45432  1234556689998763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2e-07  Score=59.96  Aligned_cols=88  Identities=19%  Similarity=0.228  Sum_probs=60.1

Q ss_pred             HHHHhcCCCCceEecCCCCCCCHH-HHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCCh----
Q psy9589          72 LSLAENCPNLYYLCLSGCSQLTDA-SLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITD----  146 (163)
Q Consensus        72 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~----  146 (163)
                      ..+...+|+|++|+++++ .+++. ++.....++++|+.|+++++ .+++-....... ...|+.|++++| .++.    
T Consensus        58 ~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~-~~~L~~L~L~~N-pl~~~~~~  133 (162)
T d1koha1          58 RIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GLKLEELWLDGN-SLSDTFRD  133 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHT-TCCCSSCCCTTS-TTSSSSSS
T ss_pred             HHHHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchhhhhhh-ccccceeecCCC-CcCcCccc
Confidence            345567899999999995 45542 34444558999999999984 566432222223 457999999998 4431    


Q ss_pred             --HHHHHHHhCCCCCccCC
Q psy9589         147 --ATLIHLALGCPRLEKLI  163 (163)
Q Consensus       147 --~~~~~l~~~~~~L~~L~  163 (163)
                        .-...+.+.+|+|+.||
T Consensus       134 ~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEET
T ss_pred             chhHHHHHHHHCCCCCEEC
Confidence              23456778899999886

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.30  E-value=6.5e-08  Score=64.42  Aligned_cols=105  Identities=21%  Similarity=0.171  Sum_probs=70.3

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL   92 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   92 (163)
                      .+++|++|++++|.. ++  +..+...+++|+.|++++| .++..  ..+             ..+++|+.|+++++ .+
T Consensus        68 ~l~~L~~L~Ls~N~i-~~--i~~~~~~~~~L~~L~l~~N-~i~~l--~~~-------------~~l~~L~~L~L~~N-~i  127 (198)
T d1m9la_          68 GMENLRILSLGRNLI-KK--IENLDAVADTLEELWISYN-QIASL--SGI-------------EKLVNLRVLYMSNN-KI  127 (198)
T ss_dssp             HHTTCCEEECCEEEE-CS--CSSHHHHHHHCCEEECSEE-ECCCH--HHH-------------HHHHHSSEEEESEE-EC
T ss_pred             CCccccChhhccccc-cc--ccccccccccccccccccc-ccccc--ccc-------------cccccccccccccc-hh
Confidence            578999999999753 32  1123344678999999998 55542  111             14678999999985 46


Q ss_pred             CHH-HHHHHHHhCCCCCEEEecCCCCCCHH--------H-HHHHHHcCCCCCEEecc
Q psy9589          93 TDA-SLIVLAQRCHQLHTLEVASCSQFTDT--------G-FQALARNCRLLAKMDLE  139 (163)
Q Consensus        93 ~~~-~~~~l~~~~~~L~~L~l~~~~~i~~~--------~-~~~l~~~~~~L~~L~l~  139 (163)
                      ++. .+..+. .+|+|+.|++++++ ++..        . -..+...+|+|+.||-.
T Consensus       128 ~~~~~~~~l~-~l~~L~~L~L~~N~-l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~  182 (198)
T d1m9la_         128 TNWGEIDKLA-ALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             CCHHHHHHHT-TTTTCSEEEECSSH-HHHHHCTTTTHHHHHHHHHHHCSSCCEESSG
T ss_pred             cccccccccc-CCCccceeecCCCc-cccCcccccchhhHHHHHHHHCCCcCEeCCc
Confidence            554 445555 89999999999854 3221        1 12234568999999743

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.28  E-value=4.5e-07  Score=65.28  Aligned_cols=134  Identities=19%  Similarity=0.136  Sum_probs=84.0

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChH-HHHHHHhcC----C---HHHHHHHHhcCCCCce
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDT-GFQALARGL----L---DSAVLSLAENCPNLYY   83 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~----~---~~~~~~~~~~~~~L~~   83 (163)
                      ..+++|++|++++|....-..    ...+++|++|+++++. ++.. .+..+....    .   -..+. ....++.+++
T Consensus       238 ~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~  311 (384)
T d2omza2         238 ASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQLEDIS-PISNLKNLTY  311 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSE
T ss_pred             hcccccchhccccCccCCCCc----ccccccCCEeeccCcc-cCCCCcccccccccccccccccccccc-ccchhcccCe
Confidence            467899999998876432222    3458899999998863 3321 111110000    0   00011 1346789999


Q ss_pred             EecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589          84 LCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI  163 (163)
Q Consensus        84 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~  163 (163)
                      |+++++ .+.+.  ..+ ..+|+|++|++++| .+++-.  .+ ..+++|++|++++| .+++-  .. ..++++|+.|+
T Consensus       312 L~ls~n-~l~~l--~~l-~~l~~L~~L~L~~n-~l~~l~--~l-~~l~~L~~L~l~~N-~l~~l--~~-l~~l~~L~~L~  379 (384)
T d2omza2         312 LTLYFN-NISDI--SPV-SSLTKLQRLFFANN-KVSDVS--SL-ANLTNINWLSAGHN-QISDL--TP-LANLTRITQLG  379 (384)
T ss_dssp             EECCSS-CCSCC--GGG-GGCTTCCEEECCSS-CCCCCG--GG-GGCTTCCEEECCSS-CCCBC--GG-GTTCTTCSEEE
T ss_pred             EECCCC-CCCCC--ccc-ccCCCCCEEECCCC-CCCCCh--hH-cCCCCCCEEECCCC-cCCCC--hh-hccCCCCCEee
Confidence            999985 45542  223 47999999999986 566422  33 45899999999998 77652  12 46788888764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.26  E-value=1.1e-08  Score=67.70  Aligned_cols=110  Identities=19%  Similarity=0.073  Sum_probs=71.7

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTD   94 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   94 (163)
                      +++++|+|++|.. +...-......+++|++|+++++. +......             .+...+.|++|+++++ .+..
T Consensus        29 ~~l~~L~Ls~N~i-~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~-------------~~~~~~~L~~L~Ls~N-~l~~   92 (192)
T d1w8aa_          29 LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN-------------AFEGASHIQELQLGEN-KIKE   92 (192)
T ss_dssp             TTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT-------------TTTTCTTCCEEECCSC-CCCE
T ss_pred             CCCCEEEeCCCCC-cccccccccCCCceEeeeeccccc-ccccccc-------------ccccccccceeeeccc-cccc
Confidence            5899999999764 221111233568999999999873 3321111             1235789999999985 4553


Q ss_pred             HHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCC
Q psy9589          95 ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVL  143 (163)
Q Consensus        95 ~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~  143 (163)
                      ..... +.++++|+.|+|+++ .++.-... .+..+++|++|++++++.
T Consensus        93 l~~~~-F~~l~~L~~L~L~~N-~l~~i~~~-~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          93 ISNKM-FLGLHQLKTLNLYDN-QISCVMPG-SFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             ECSSS-STTCTTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECTTCCB
T ss_pred             cCHHH-HhCCCcccccccCCc-cccccCHH-HhcCCccccccccccccc
Confidence            32222 347899999999984 56643222 235578999999999843

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=7e-07  Score=57.34  Aligned_cols=87  Identities=21%  Similarity=0.305  Sum_probs=56.4

Q ss_pred             HHHHHhCCcCCEEEecCCCCCChH-HHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHH-HHHHHHHhCCCCCEEE
Q psy9589          34 IVLAQRCHQLHTLEVASCSQFTDT-GFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDA-SLIVLAQRCHQLHTLE  111 (163)
Q Consensus        34 ~~i~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~  111 (163)
                      ..+.+.+|+|+.|++++| .++.. ++..            ..+.+|+|+.|+++++ .+++. .+.. . ...+|+.|+
T Consensus        58 ~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~------------~~~~l~~L~~L~Ls~N-~i~~l~~l~~-l-~~~~L~~L~  121 (162)
T d1koha1          58 RIIEENIPELLSLNLSNN-RLYRLDDMSS------------IVQKAPNLKILNLSGN-ELKSERELDK-I-KGLKLEELW  121 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSS-CCCCCSGGGT------------HHHHSTTCCCCCCTTS-CCCCGGGHHH-H-TTCCCSSCC
T ss_pred             HHHHHhCCCCCEeeCCCc-cccCCchhHH------------HHhhCCcccccccccC-ccccchhhhh-h-hccccceee
Confidence            345567999999999998 45432 2111            2236889999999985 45543 3333 2 355799999


Q ss_pred             ecCCCCCC------HHHHHHHHHcCCCCCEEe
Q psy9589         112 VASCSQFT------DTGFQALARNCRLLAKMD  137 (163)
Q Consensus       112 l~~~~~i~------~~~~~~l~~~~~~L~~L~  137 (163)
                      +.+++ ++      ......+.+.+|+|+.||
T Consensus       122 L~~Np-l~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         122 LDGNS-LSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CTTST-TSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cCCCC-cCcCcccchhHHHHHHHHCCCCCEEC
Confidence            98854 32      123445566789999886

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.21  E-value=8.9e-07  Score=59.12  Aligned_cols=121  Identities=19%  Similarity=0.224  Sum_probs=75.2

Q ss_pred             CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589          14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT   93 (163)
Q Consensus        14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   93 (163)
                      +.+|++|+++++...+-.+    .+.+++|++|++++| .+++..  .             ...+++|++|+++++ .++
T Consensus        45 L~~L~~L~l~~~~i~~l~~----l~~l~~L~~L~L~~n-~i~~l~--~-------------~~~l~~L~~L~l~~n-~i~  103 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGN-KLTDIK--P-------------LANLKNLGWLFLDEN-KVK  103 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSS-CCCCCG--G-------------GTTCTTCCEEECCSS-CCC
T ss_pred             hcCccEEECcCCCCCCchh----HhhCCCCCEEeCCCc-cccCcc--c-------------cccCccccccccccc-ccc
Confidence            5689999999876433222    367999999999998 555321  1             126789999999986 455


Q ss_pred             HHHHHHHHHhCCCCCEEEecCCCCCCHHHHHH------------------HHHcCCCCCEEeccCCCCCChHHHHHHHhC
Q psy9589          94 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQA------------------LARNCRLLAKMDLEECVLITDATLIHLALG  155 (163)
Q Consensus        94 ~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~------------------l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~  155 (163)
                      +  +..+. .+++|+.|++.++....-.++..                  ....+++|+.+++++| .+++  +.. ...
T Consensus       104 ~--l~~l~-~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n-~l~~--i~~-l~~  176 (210)
T d1h6ta2         104 D--LSSLK-DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QISD--IVP-LAG  176 (210)
T ss_dssp             C--GGGGT-TCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCC--CGG-GTT
T ss_pred             c--ccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc--ccc-ccC
Confidence            4  22333 68899999998754222111110                  1123567777777776 5544  112 346


Q ss_pred             CCCCccC
Q psy9589         156 CPRLEKL  162 (163)
Q Consensus       156 ~~~L~~L  162 (163)
                      +++|++|
T Consensus       177 l~~L~~L  183 (210)
T d1h6ta2         177 LTKLQNL  183 (210)
T ss_dssp             CTTCCEE
T ss_pred             CCCCCEE
Confidence            6666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2.7e-08  Score=69.57  Aligned_cols=109  Identities=17%  Similarity=0.077  Sum_probs=48.4

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL   92 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   92 (163)
                      .+++|++|+++++......  ......+++|+.++++++ .++...-.             .+..+++|++|+++++ .+
T Consensus       103 ~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~l~l~~N-~l~~i~~~-------------~f~~~~~L~~L~l~~N-~l  165 (284)
T d1ozna_         103 GLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDN-ALQALPDD-------------TFRDLGNLTHLFLHGN-RI  165 (284)
T ss_dssp             TCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSS-CCCCCCTT-------------TTTTCTTCCEEECCSS-CC
T ss_pred             ccccCCEEecCCccccccc--ccccchhcccchhhhccc-cccccChh-------------HhccccchhhcccccC-cc
Confidence            4567777777665421110  112233566666666665 23221100             1123456666666653 23


Q ss_pred             CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      .......+ .++++|+.+++.++ .++.... ....++++|++|++++|
T Consensus       166 ~~l~~~~f-~~l~~L~~l~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N  211 (284)
T d1ozna_         166 SSVPERAF-RGLHSLDRLLLHQN-RVAHVHP-HAFRDLGRLMTLYLFAN  211 (284)
T ss_dssp             CEECTTTT-TTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS
T ss_pred             cccchhhh-ccccccchhhhhhc-cccccCh-hHhhhhhhccccccccc
Confidence            32111122 24555666666553 2332111 11233455555555555

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.03  E-value=2.4e-06  Score=61.30  Aligned_cols=122  Identities=16%  Similarity=0.151  Sum_probs=79.3

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|++|+++++.. ++..   ....+++|+.|++++| .++...  .             ...+++|++|+++++. 
T Consensus       216 ~~~~~L~~L~l~~n~l-~~~~---~l~~l~~L~~L~l~~n-~l~~~~--~-------------~~~~~~L~~L~l~~~~-  274 (384)
T d2omza2         216 GILTNLDELSLNGNQL-KDIG---TLASLTNLTDLDLANN-QISNLA--P-------------LSGLTKLTELKLGANQ-  274 (384)
T ss_dssp             GGCTTCCEEECCSSCC-CCCG---GGGGCTTCSEEECCSS-CCCCCG--G-------------GTTCTTCSEEECCSSC-
T ss_pred             cccCCCCEEECCCCCC-CCcc---hhhcccccchhccccC-ccCCCC--c-------------ccccccCCEeeccCcc-
Confidence            4578999999999764 3321   2356899999999998 444321  0             1246777777776642 


Q ss_pred             CCHH--------------------HHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHH
Q psy9589          92 LTDA--------------------SLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIH  151 (163)
Q Consensus        92 ~~~~--------------------~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~  151 (163)
                      +...                    ++.. ...+++++.|+++++ .+++..  . ...+++|++|++++| .+++-  ..
T Consensus       275 l~~~~~~~~~~~l~~l~~~~n~l~~~~~-~~~~~~l~~L~ls~n-~l~~l~--~-l~~l~~L~~L~L~~n-~l~~l--~~  346 (384)
T d2omza2         275 ISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN-NISDIS--P-VSSLTKLQRLFFANN-KVSDV--SS  346 (384)
T ss_dssp             CCCCGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSS-CCSCCG--G-GGGCTTCCEEECCSS-CCCCC--GG
T ss_pred             cCCCCccccccccccccccccccccccc-cchhcccCeEECCCC-CCCCCc--c-cccCCCCCEEECCCC-CCCCC--hh
Confidence            2210                    0111 236788888888875 566432  1 356899999999998 77652  23


Q ss_pred             HHhCCCCCccCC
Q psy9589         152 LALGCPRLEKLI  163 (163)
Q Consensus       152 l~~~~~~L~~L~  163 (163)
                       +..+++|+.|+
T Consensus       347 -l~~l~~L~~L~  357 (384)
T d2omza2         347 -LANLTNINWLS  357 (384)
T ss_dssp             -GGGCTTCCEEE
T ss_pred             -HcCCCCCCEEE
Confidence             35788888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=5.1e-08  Score=67.62  Aligned_cols=16  Identities=19%  Similarity=0.110  Sum_probs=8.9

Q ss_pred             cCCCCCEEeccCCCCCC
Q psy9589         129 NCRLLAKMDLEECVLIT  145 (163)
Q Consensus       129 ~~~~L~~L~l~~~~~l~  145 (163)
                      .+++|++|++++| .++
T Consensus       170 ~l~~L~~L~Ls~N-~L~  185 (266)
T d1p9ag_         170 GLENLDTLLLQEN-SLY  185 (266)
T ss_dssp             TCTTCCEEECCSS-CCC
T ss_pred             cccccceeecccC-CCc
Confidence            3556666666665 443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.99  E-value=3.6e-06  Score=56.55  Aligned_cols=79  Identities=19%  Similarity=0.198  Sum_probs=54.6

Q ss_pred             HhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCC
Q psy9589          38 QRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQ  117 (163)
Q Consensus        38 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  117 (163)
                      ..+++|++|++++| .+++..               -...+++|+.|+++++ .+++  +..+ .++++|++|++++| .
T Consensus       148 ~~~~~L~~L~l~~n-~~~~~~---------------~l~~l~~L~~L~Ls~n-~l~~--l~~l-~~l~~L~~L~Ls~N-~  206 (227)
T d1h6ua2         148 AGLTNLQYLSIGNA-QVSDLT---------------PLANLSKLTTLKADDN-KISD--ISPL-ASLPNLIEVHLKNN-Q  206 (227)
T ss_dssp             GGCTTCCEEECCSS-CCCCCG---------------GGTTCTTCCEEECCSS-CCCC--CGGG-GGCTTCCEEECTTS-C
T ss_pred             cccccccccccccc-ccccch---------------hhcccccceecccCCC-ccCC--Chhh-cCCCCCCEEECcCC-c
Confidence            34677788888776 333211               0136899999999996 4554  2333 38999999999996 5


Q ss_pred             CCHHHHHHHHHcCCCCCEEeccC
Q psy9589         118 FTDTGFQALARNCRLLAKMDLEE  140 (163)
Q Consensus       118 i~~~~~~~l~~~~~~L~~L~l~~  140 (163)
                      +++-.  . ..++++|+.|++++
T Consensus       207 lt~i~--~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         207 ISDVS--P-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCBCG--G-GTTCTTCCEEEEEE
T ss_pred             CCCCc--c-cccCCCCCEEEeeC
Confidence            77532  2 35689999999974

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.6e-07  Score=65.04  Aligned_cols=61  Identities=21%  Similarity=0.168  Sum_probs=33.1

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV  142 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  142 (163)
                      .++.|+.|+++++ .++......+ ..+++|++|+|+++ .++.-. ..+ ...+.|+.|++++|+
T Consensus       146 ~l~~l~~l~l~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~L~~lp-~~~-~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         146 PTPKLEKLSLANN-NLTELPAGLL-NGLENLDTLLLQEN-SLYTIP-KGF-FGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TCTTCCEEECTTS-CCSCCCTTTT-TTCTTCCEEECCSS-CCCCCC-TTT-TTTCCCSEEECCSCC
T ss_pred             ccccchhcccccc-cccccCcccc-ccccccceeecccC-CCcccC-hhH-CCCCCCCEEEecCCC
Confidence            3456666666664 3332222222 25677888888774 354211 111 235778888888764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.89  E-value=7.7e-08  Score=63.56  Aligned_cols=102  Identities=15%  Similarity=0.108  Sum_probs=66.3

Q ss_pred             CcCCEEEecCCCCCCh-HHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCC
Q psy9589          41 HQLHTLEVASCSQFTD-TGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFT  119 (163)
Q Consensus        41 ~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~  119 (163)
                      +++++|++++| .++. ...             ..+..+++|++|+++++ .+.......+ ..+++|++|+++++ .++
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~-------------~~f~~l~~L~~L~L~~N-~i~~~~~~~~-~~~~~L~~L~Ls~N-~l~   91 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSD-------------GLFGRLPHLVKLELKRN-QLTGIEPNAF-EGASHIQELQLGEN-KIK   91 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCS-------------CSGGGCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSC-CCC
T ss_pred             CCCCEEEeCCC-CCcccccc-------------cccCCCceEeeeecccc-cccccccccc-ccccccceeeeccc-ccc
Confidence            58999999998 4432 110             11236899999999885 3443322233 36899999999984 566


Q ss_pred             HHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589         120 DTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL  162 (163)
Q Consensus       120 ~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  162 (163)
                      .-... .+.++++|+.|++++| .++.-. ...+..+++|++|
T Consensus        92 ~l~~~-~F~~l~~L~~L~L~~N-~l~~i~-~~~f~~l~~L~~l  131 (192)
T d1w8aa_          92 EISNK-MFLGLHQLKTLNLYDN-QISCVM-PGSFEHLNSLTSL  131 (192)
T ss_dssp             EECSS-SSTTCTTCCEEECCSS-CCCEEC-TTSSTTCTTCCEE
T ss_pred             ccCHH-HHhCCCcccccccCCc-cccccC-HHHhcCCcccccc
Confidence            43222 2356899999999998 666421 1223566777654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.5e-06  Score=60.48  Aligned_cols=111  Identities=14%  Similarity=0.057  Sum_probs=74.9

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|+.++++++.. +...- .....+++|++|++++| .++.....             .+..++.|+.++++++ .
T Consensus       126 ~~~~~L~~l~l~~N~l-~~i~~-~~f~~~~~L~~L~l~~N-~l~~l~~~-------------~f~~l~~L~~l~l~~N-~  188 (284)
T d1ozna_         126 RGLAALQYLYLQDNAL-QALPD-DTFRDLGNLTHLFLHGN-RISSVPER-------------AFRGLHSLDRLLLHQN-R  188 (284)
T ss_dssp             TTCTTCCEEECCSSCC-CCCCT-TTTTTCTTCCEEECCSS-CCCEECTT-------------TTTTCTTCCEEECCSS-C
T ss_pred             chhcccchhhhccccc-cccCh-hHhccccchhhcccccC-cccccchh-------------hhccccccchhhhhhc-c
Confidence            4578999999998653 32111 22356889999999998 44422111             1236789999999985 4


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV  142 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  142 (163)
                      +++.....+ .++++|++|+++++ .++..... ....+++|++|++++|+
T Consensus       189 l~~i~~~~f-~~l~~L~~L~l~~N-~i~~~~~~-~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         189 VAHVHPHAF-RDLGRLMTLYLFAN-NLSALPTE-ALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CCEECTTTT-TTCTTCCEEECCSS-CCSCCCHH-HHTTCTTCCEEECCSSC
T ss_pred             ccccChhHh-hhhhhccccccccc-cccccccc-ccccccccCEEEecCCC
Confidence            554333333 47899999999985 56554433 34568999999999974

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.73  E-value=2.1e-06  Score=60.17  Aligned_cols=34  Identities=15%  Similarity=0.112  Sum_probs=17.8

Q ss_pred             cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589          13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC   51 (163)
Q Consensus        13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~   51 (163)
                      .+++|++++++++....- .    ...+++|++|+++++
T Consensus       148 ~l~~L~~l~l~~n~l~~l-~----~~~~~~L~~L~l~~n  181 (305)
T d1xkua_         148 GMKKLSYIRIADTNITTI-P----QGLPPSLTELHLDGN  181 (305)
T ss_dssp             GCTTCCEEECCSSCCCSC-C----SSCCTTCSEEECTTS
T ss_pred             cccccCccccccCCcccc-C----cccCCccCEEECCCC
Confidence            456677777766542110 0    012556666666665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.46  E-value=7.9e-06  Score=57.14  Aligned_cols=63  Identities=17%  Similarity=0.144  Sum_probs=31.0

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT  145 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  145 (163)
                      .++.+++|+++++ .+.......+ .++++|++|+++++ .++.-. ..+ ..+++|++|++++| +++
T Consensus       193 ~~~~l~~L~~s~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~L~~lp-~~l-~~l~~L~~L~Ls~N-~i~  255 (305)
T d1xkua_         193 GLNNLAKLGLSFN-SISAVDNGSL-ANTPHLRELHLNNN-KLVKVP-GGL-ADHKYIQVVYLHNN-NIS  255 (305)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTTG-GGSTTCCEEECCSS-CCSSCC-TTT-TTCSSCCEEECCSS-CCC
T ss_pred             ccccccccccccc-cccccccccc-cccccceeeecccc-cccccc-ccc-ccccCCCEEECCCC-ccC
Confidence            4455555555553 2332222222 25666777777664 343211 112 33567777777776 444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=1e-05  Score=51.42  Aligned_cols=85  Identities=11%  Similarity=0.087  Sum_probs=45.7

Q ss_pred             hCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCC
Q psy9589          39 RCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQF  118 (163)
Q Consensus        39 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i  118 (163)
                      .+++|++|.+.++..++......             +..+++|+.|+++++ .++.....++ ..+++|++|+|+++ .+
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~-------------f~~l~~L~~L~Ls~N-~l~~i~~~~f-~~l~~L~~L~Ls~N-~l   92 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRD-------------LRGLGELRNLTIVKS-GLRFVAPDAF-HFTPRLSRLNLSFN-AL   92 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGG-------------SCSCCCCSEEECCSS-CCCEECTTGG-GSCSCCCEEECCSS-CC
T ss_pred             CccccCeeecCCCccccccCchh-------------hccccccCcceeecc-ccCCcccccc-cccccccceeccCC-CC
Confidence            35677777776654444321111             124677777777774 4443322222 36777788887773 34


Q ss_pred             CHHHHHHHHHcCCCCCEEeccCC
Q psy9589         119 TDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus       119 ~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      +.-... ..+ ...|+.|++++|
T Consensus        93 ~~l~~~-~~~-~~~l~~L~L~~N  113 (156)
T d2ifga3          93 ESLSWK-TVQ-GLSLQELVLSGN  113 (156)
T ss_dssp             SCCCST-TTC-SCCCCEEECCSS
T ss_pred             cccChh-hhc-cccccccccCCC
Confidence            422111 112 235777777776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.14  E-value=2.2e-06  Score=60.31  Aligned_cols=109  Identities=14%  Similarity=0.082  Sum_probs=51.1

Q ss_pred             CCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHH
Q psy9589          16 NLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDA   95 (163)
Q Consensus        16 ~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~   95 (163)
                      .+++|+|+++.......+..-...+++|++|++++|..++..--.             -...+++|++|+++++. +...
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~-------------~i~~L~~L~~L~Ls~N~-l~~~  116 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-------------AIAKLTQLHYLYITHTN-VSGA  116 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-------------GGGGCTTCSEEEEEEEC-CEEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccc-------------ccccccccchhhhcccc-cccc
Confidence            467777776532211111112234777777777764333211000             01256677777777642 3221


Q ss_pred             HHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          96 SLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        96 ~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      ... ....+++|+.+++..+. +.... ......++.|+.+++++|
T Consensus       117 ~~~-~~~~~~~L~~l~l~~N~-~~~~~-p~~l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_         117 IPD-FLSQIKTLVTLDFSYNA-LSGTL-PPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             CCG-GGGGCTTCCEEECCSSE-EESCC-CGGGGGCTTCCEEECCSS
T ss_pred             ccc-cccchhhhccccccccc-ccccC-chhhccCcccceeecccc
Confidence            111 12256667777776542 21111 111234566777777665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=8.7e-05  Score=46.89  Aligned_cols=65  Identities=15%  Similarity=0.116  Sum_probs=46.5

Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589          77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT  145 (163)
Q Consensus        77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  145 (163)
                      ..++|++|++.+...++......+. ++++|+.|+++++ .++.-... .+..+++|++|++++| .++
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~f~-~l~~L~~L~Ls~N-~l~~i~~~-~f~~l~~L~~L~Ls~N-~l~   93 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-ALE   93 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CCS
T ss_pred             CccccCeeecCCCccccccCchhhc-cccccCcceeecc-ccCCcccc-cccccccccceeccCC-CCc
Confidence            5679999999765555543333333 7899999999984 56653322 3356899999999998 554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.82  E-value=7.7e-06  Score=57.45  Aligned_cols=111  Identities=14%  Similarity=0.144  Sum_probs=62.6

Q ss_pred             hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589          12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ   91 (163)
Q Consensus        12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   91 (163)
                      ..+++|++|+|+++..+... +..-...+++|++|++++|. +......             .....+.|++++++.+. 
T Consensus        73 ~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~-l~~~~~~-------------~~~~~~~L~~l~l~~N~-  136 (313)
T d1ogqa_          73 ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTN-VSGAIPD-------------FLSQIKTLVTLDFSYNA-  136 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEEC-CEEECCG-------------GGGGCTTCCEEECCSSE-
T ss_pred             hcCccccccccccccccccc-cccccccccccchhhhcccc-ccccccc-------------cccchhhhccccccccc-
Confidence            46899999999874333221 11123458999999999983 3321100             12356789999988753 


Q ss_pred             CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCC-CCEEeccCC
Q psy9589          92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRL-LAKMDLEEC  141 (163)
Q Consensus        92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~-L~~L~l~~~  141 (163)
                      ........+ ..++.++.++++++. ++......+ ..++. ++.+++++|
T Consensus       137 ~~~~~p~~l-~~l~~L~~l~l~~n~-l~~~ip~~~-~~l~~l~~~l~~~~n  184 (313)
T d1ogqa_         137 LSGTLPPSI-SSLPNLVGITFDGNR-ISGAIPDSY-GSFSKLFTSMTISRN  184 (313)
T ss_dssp             EESCCCGGG-GGCTTCCEEECCSSC-CEEECCGGG-GCCCTTCCEEECCSS
T ss_pred             ccccCchhh-ccCcccceeeccccc-ccccccccc-ccccccccccccccc
Confidence            221111223 378889999998743 332111112 22333 366666665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=4.2e-05  Score=51.47  Aligned_cols=88  Identities=14%  Similarity=0.062  Sum_probs=47.6

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTD   94 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   94 (163)
                      +++++|+++++. ++...- .....+++|++|++++|.........             .+..++.++++.+..+..+..
T Consensus        29 ~~l~~L~Ls~n~-i~~l~~-~~f~~l~~L~~L~ls~n~~~~~i~~~-------------~f~~l~~l~~l~~~~~n~l~~   93 (242)
T d1xwdc1          29 RNAIELRFVLTK-LRVIQK-GAFSGFGDLEKIEISQNDVLEVIEAD-------------VFSNLPKLHEIRIEKANNLLY   93 (242)
T ss_dssp             SCCSEEEEESCC-CCEECT-TTTTTCTTCCEEEEESCTTCCEECSS-------------SEESCTTCCEEEEECCTTCCE
T ss_pred             CCCCEEECcCCc-CCccCh-hHhhccchhhhhhhccccccceeecc-------------ccccccccccccccccccccc
Confidence            478888887755 332111 12255788888888776332211000             012466777777765544443


Q ss_pred             HHHHHHHHhCCCCCEEEecCCCCCC
Q psy9589          95 ASLIVLAQRCHQLHTLEVASCSQFT  119 (163)
Q Consensus        95 ~~~~~l~~~~~~L~~L~l~~~~~i~  119 (163)
                      .....+ ..+++|+.+++.++ .++
T Consensus        94 ~~~~~~-~~l~~L~~l~l~~~-~l~  116 (242)
T d1xwdc1          94 INPEAF-QNLPNLQYLLISNT-GIK  116 (242)
T ss_dssp             ECTTSE-ECCTTCCEEEEESC-CCC
T ss_pred             cccccc-cccccccccccchh-hhc
Confidence            322222 36778888888774 344

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=2.3e-05  Score=52.76  Aligned_cols=38  Identities=11%  Similarity=0.121  Sum_probs=16.0

Q ss_pred             hCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589         103 RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus       103 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                      ++++++++.+..++.+...... ...++++|+.|+++++
T Consensus        76 ~l~~l~~l~~~~~n~l~~~~~~-~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          76 NLPKLHEIRIEKANNLLYINPE-AFQNLPNLQYLLISNT  113 (242)
T ss_dssp             SCTTCCEEEEECCTTCCEECTT-SEECCTTCCEEEEESC
T ss_pred             cccccccccccccccccccccc-cccccccccccccchh
Confidence            3455555555443333322211 1133455555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.26  E-value=0.0019  Score=44.93  Aligned_cols=93  Identities=22%  Similarity=0.206  Sum_probs=56.3

Q ss_pred             CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q psy9589          15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTD   94 (163)
Q Consensus        15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   94 (163)
                      .++++|+++++. ++.     +-...|+|++|+++++ .++.-.                 ...++|+.|++.++. ++.
T Consensus        38 ~~l~~LdLs~~~-L~~-----lp~~~~~L~~L~Ls~N-~l~~lp-----------------~~~~~L~~L~l~~n~-l~~   92 (353)
T d1jl5a_          38 RQAHELELNNLG-LSS-----LPELPPHLESLVASCN-SLTELP-----------------ELPQSLKSLLVDNNN-LKA   92 (353)
T ss_dssp             HTCSEEECTTSC-CSC-----CCSCCTTCSEEECCSS-CCSSCC-----------------CCCTTCCEEECCSSC-CSC
T ss_pred             cCCCEEEeCCCC-CCC-----CCCCCCCCCEEECCCC-CCcccc-----------------cchhhhhhhhhhhcc-cch
Confidence            468899998854 432     1133678999999876 444211                 124578888888743 321


Q ss_pred             HHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589          95 ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC  141 (163)
Q Consensus        95 ~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~  141 (163)
                           +..-.+.|++|+++++ .++.-.  .. ..++.|+.|+++++
T Consensus        93 -----l~~lp~~L~~L~L~~n-~l~~lp--~~-~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          93 -----LSDLPPLLEYLGVSNN-QLEKLP--EL-QNSSFLKIIDVDNN  130 (353)
T ss_dssp             -----CCSCCTTCCEEECCSS-CCSSCC--CC-TTCTTCCEEECCSS
T ss_pred             -----hhhhcccccccccccc-cccccc--ch-hhhccceeeccccc
Confidence                 1111246888888875 344321  12 34678888888876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=94.13  E-value=0.015  Score=40.10  Aligned_cols=56  Identities=18%  Similarity=0.169  Sum_probs=38.5

Q ss_pred             CCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCCh
Q psy9589          78 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITD  146 (163)
Q Consensus        78 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~  146 (163)
                      +|+|++|+++++. +..     +...+++|+.|++++| .++.-     .+..++|++|++++| .++.
T Consensus       283 ~~~L~~L~Ls~N~-l~~-----lp~~~~~L~~L~L~~N-~L~~l-----~~~~~~L~~L~L~~N-~L~~  338 (353)
T d1jl5a_         283 PPSLEELNVSNNK-LIE-----LPALPPRLERLIASFN-HLAEV-----PELPQNLKQLHVEYN-PLRE  338 (353)
T ss_dssp             CTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSS-CCSS
T ss_pred             CCCCCEEECCCCc-cCc-----cccccCCCCEEECCCC-cCCcc-----ccccCCCCEEECcCC-cCCC
Confidence            5789999998863 432     2235789999999875 46532     233568999999998 5653