Psyllid ID: psy9628

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MSGTSSTNAPSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLWKRCVET
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEccccHHHHHHHHHcHHHHHHHHcccccccHHHHHHHHHHHHcccccEEEEEEcEEEEEEEEEEcEEEcccHHHHHcccccccccccccHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEcHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHcccccccEEEEEEcEEEEEEEcccEEEcccHHHHHHcccccccccccHHHHcc
Coil and Loop (DISEMBL)
msgtsstnapsmtnqiitIGDKSRAILQRLYGNNIILaanevgrrpptfldaskvaqetskynftsgkiiyNKFKSVvsyttsdlpifslasvtaapklgvyDSLWKRCVET
Flexible Loop (DISEMBL)
msgtsstnapsmtnqIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASkvaqetskynftsgkiiynKFKSVVSYTTSDLPIFSLasvtaapklgvyDSLWKRCVET
Low Complexity Region (SEG)
MSGTSSTNAPSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLWKRCVET
Disordered region (IsUnstruct)
**************QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLWKRCV**
Disordered Region (DISOPRED)
***********MTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSL**********VYDSLWKRCV**
Disordered Region (DISEMBL)
**********SMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLWKRCVET
Disordered Region (DISPRO)
***********MTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLWKR****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSGTSSTNAPSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLWKRCVET
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
O01666	297	ATP synthase subunit gamm	yes	N/A	0.812	0.306	0.634	4e-29
P05631	298	ATP synthase subunit gamm	yes	N/A	0.812	0.305	0.473	3e-20
P36542	298	ATP synthase subunit gamm	yes	N/A	0.803	0.302	0.489	1e-19
Q5RBS9	297	ATP synthase subunit gamm	yes	N/A	0.803	0.303	0.478	2e-19
Q4R5B0	298	ATP synthase subunit gamm	N/A	N/A	0.803	0.302	0.456	4e-19
P35435	273	ATP synthase subunit gamm	yes	N/A	0.803	0.329	0.456	2e-18
Q91VR2	298	ATP synthase subunit gamm	yes	N/A	0.803	0.302	0.434	2e-17
P38077	311	ATP synthase subunit gamm	yes	N/A	0.785	0.282	0.315	2e-06
Q96250	325	ATP synthase subunit gamm	yes	N/A	0.642	0.221	0.328	6e-06
P49377	289	ATP synthase subunit gamm	yes	N/A	0.785	0.304	0.296	2e-05

>sp|O01666|ATPG_DROME ATP synthase subunit gamma, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-gamma PE=2 SV=2

 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 73/93 (78%), Gaps = 2/93 (2%)

Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET--SKYNFTSGKIIYN 72
           ++  +GDKSRAIL RLYG NI++ ANEVGR PPTFLDASK+A E   + Y++T GKI+YN
Sbjct: 128 KVFCVGDKSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYN 187

Query: 73  KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           +FKSVVSY  S LPIFS ++V  + KL VYDSL
Sbjct: 188 RFKSVVSYQCSTLPIFSGSTVEKSEKLAVYDSL 220

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
Drosophila melanogaster (taxid: 7227)

>sp|P05631|ATPG_BOVIN ATP synthase subunit gamma, mitochondrial OS=Bos taurus GN=ATP5C1 PE=1 SV=3

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 2/93 (2%)

Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYN 72
           +II +GDK R+IL R + +  ++   EVGRRPPTF DAS +A E   S Y F  G II+N
Sbjct: 129 KIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFN 188

Query: 73  KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           +F+SV+SY T + PIFSL ++++A  + +YD +
Sbjct: 189 RFRSVISYKTEEKPIFSLDTISSAESMSIYDDI 221

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Bos taurus (taxid: 9913)

>sp|P36542|ATPG_HUMAN ATP synthase subunit gamma, mitochondrial OS=Homo sapiens GN=ATP5C1 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 2/92 (2%)

Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNK 73
           ++ IGDK R IL R + +  ++A  EVGR+PPTF DAS +A E   S Y F  G II+NK
Sbjct: 130 LVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNK 189

Query: 74  FKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           F+SV+SY T + PIFSL +V +A  + +YD +
Sbjct: 190 FRSVISYKTEEKPIFSLNTVASADSMSIYDDI 221

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Homo sapiens (taxid: 9606)

>sp|Q5RBS9|ATPG_PONAB ATP synthase subunit gamma, mitochondrial OS=Pongo abelii GN=ATP5C1 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 62/92 (67%), Gaps = 2/92 (2%)

Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNK 73
           ++ +GDK R IL R + +  ++A  EVGR+PPTF DAS +A E   S Y F  G II+NK
Sbjct: 130 LVGVGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNK 189

Query: 74  FKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           F+SV+SY T + PIFSL +V +A  + +YD +
Sbjct: 190 FRSVISYKTEEKPIFSLNTVASADSMSIYDDI 221

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Pongo abelii (taxid: 9601)

>sp|Q4R5B0|ATPG_MACFA ATP synthase subunit gamma, mitochondrial OS=Macaca fascicularis GN=ATP5C1 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 62/92 (67%), Gaps = 2/92 (2%)

Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNK 73
           ++ IGDK R IL R + +  ++A  EVGR+PPTF DAS +A E   S Y F  G +I+N+
Sbjct: 130 LVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSVIFNR 189

Query: 74  FKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           F+SV+SY T + PIFSL ++ +A  + +YD +
Sbjct: 190 FRSVISYKTEEKPIFSLNTIASAESMSIYDDI 221

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Macaca fascicularis (taxid: 9541)

>sp|P35435|ATPG_RAT ATP synthase subunit gamma, mitochondrial OS=Rattus norvegicus GN=Atp5c1 PE=1 SV=2

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 63/92 (68%), Gaps = 2/92 (2%)

Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNK 73
           I+ IG+K ++IL R + +  +++  +VGR+PPTF DAS +A E   S Y F  G II+N+
Sbjct: 105 IVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQ 164

Query: 74  FKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           FKSV+SY T + PIFS ++V AA  + +YD +
Sbjct: 165 FKSVISYKTEEKPIFSFSTVVAAENMSIYDDI 196

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Rattus norvegicus (taxid: 10116)

>sp|Q91VR2|ATPG_MOUSE ATP synthase subunit gamma, mitochondrial OS=Mus musculus GN=Atp5c1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 2/92 (2%)

Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNK 73
           I+ +G+K + IL R + +  +++  +VGR+PPTF DAS +A E   S Y F  G II+N+
Sbjct: 130 IVGVGEKIKGILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQ 189

Query: 74  FKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           FKSV+SY T + PIFSL ++  A  + +YD +
Sbjct: 190 FKSVISYKTEEKPIFSLNTIATAETMSIYDDI 221

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Mus musculus (taxid: 10090)

>sp|P38077|ATPG_YEAST ATP synthase subunit gamma, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATP3 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE----TSKYNFTSGKIIY 71
           I+TIGDK +  L R + NNI L+ N +G+  PTF +++ +A +         +    I Y
Sbjct: 140 IVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFY 199

Query: 72  NKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD 103
           N   S +S+  S+ PIF+  ++  +P  G ++
Sbjct: 200 NDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFE 231

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q96250|ATPG3_ARATH ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 9   APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSK-YNFTSG 67
            P    Q + +G+K++AI+ R   N+I+L+  E+ + P  +   S +A +  K   F + 
Sbjct: 137 GPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVLADDILKNVEFDAL 196

Query: 68  KIIYNKFKSVVSY 80
           +I+YNKF SVV++
Sbjct: 197 RIVYNKFHSVVAF 209

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Arabidopsis thaliana (taxid: 3702)

>sp|P49377|ATPG_KLULA ATP synthase subunit gamma, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ATP3 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQ---ETSKYNFTSGKIIYN 72
           ++ IGDK +  L R   +N+  A N VG+  PTF + S +A    E    N+    I +N
Sbjct: 119 VVAIGDKVKGQLLRTNSDNLKFAFNGVGKEAPTFEETSLIANKILEGGASNYKKVSIFWN 178

Query: 73  KFKSVVSYTTSDLPIFSLASVTAAPKLGVYD 103
              S +S+  S+ P+F+ A++  +P    ++
Sbjct: 179 DPISSLSFEPSNKPVFNAAAIEQSPSFSKFE 209

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
90820034	289	putative mitochondrial ATP synthase gamm	0.866	0.335	0.711	1e-34
53830718	289	putative mitochondrial ATP synthase gamm	0.803	0.311	0.722	3e-33
46561754	289	putative mitochondrial ATP synthase gamm	0.803	0.311	0.722	4e-33
124487976	268	putative mitochondrial ATP synthase gamm	0.812	0.339	0.626	2e-30
242008370	298	ATP synthase gamma chain isoform 1, puta	0.812	0.305	0.677	6e-30
358443042	275	control protein HCTL028 [Heliconius melp	0.812	0.330	0.688	7e-30
389608749	296	ATP synthase-gamma chain [Papilio xuthus	0.875	0.331	0.633	3e-29
332372901	294	unknown [Dendroctonus ponderosae]	0.875	0.333	0.6	4e-29
358443056	226	control protein HCTL028 [Heliconius erat	0.875	0.433	0.643	1e-28
357621324	296	H+ transporting ATP synthase gamma subun	0.812	0.307	0.645	1e-28

>gi|90820034|gb|ABD98774.1| putative mitochondrial ATP synthase gamma-subunit [Graphocephala atropunctata]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 87/97 (89%)

Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFK 75
           ++ IGDKSRAILQRLYG NIIL ANEVGR+PPTFLDA+K+AQ+T  +NFTSGKI+YN+FK
Sbjct: 123 VLCIGDKSRAILQRLYGKNIILVANEVGRKPPTFLDAAKIAQQTKDFNFTSGKIVYNRFK 182

Query: 76  SVVSYTTSDLPIFSLASVTAAPKLGVYDSLWKRCVET 112
           SVVSY+TS++P+FS A+V AAPKLGVYDSL +  +++
Sbjct: 183 SVVSYSTSEIPLFSAAAVAAAPKLGVYDSLDEEVIKS 219

Source: Graphocephala atropunctata

Species: Graphocephala atropunctata

Genus: Graphocephala

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|53830718|gb|AAU95202.1| putative mitochondrial ATP synthase gamma-subunit [Oncometopia nigricans]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/90 (72%), Positives = 83/90 (92%)

Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFK 75
           ++ IGDKSRAILQRLYG NIIL ANE+GR+PP+FLDA+++AQ+T  +NFTSGKI+YN+FK
Sbjct: 123 VLCIGDKSRAILQRLYGKNIILVANEIGRKPPSFLDAARIAQQTKDFNFTSGKIVYNRFK 182

Query: 76  SVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           SVVSY+T+++P+FS A+V AAPKLGVYDSL
Sbjct: 183 SVVSYSTTEIPLFSAAAVAAAPKLGVYDSL 212

Source: Oncometopia nigricans

Species: Oncometopia nigricans

Genus: Oncometopia

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|46561754|gb|AAT01082.1| putative mitochondrial ATP synthase gamma-subunit [Homalodisca vitripennis]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/90 (72%), Positives = 83/90 (92%)

Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFK 75
           ++ IGDKSRAILQRLYG NIIL ANE+GR+PP+FLDA+++AQ+T  +NFTSGKI+YN+FK
Sbjct: 123 VLCIGDKSRAILQRLYGKNIILVANEIGRKPPSFLDAARIAQQTKDFNFTSGKIVYNRFK 182

Query: 76  SVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           SVVSY+T+++P+FS A+V AAPKLGVYDSL
Sbjct: 183 SVVSYSTTEIPLFSAAAVAAAPKLGVYDSL 212

Source: Homalodisca vitripennis

Species: Homalodisca vitripennis

Genus: Homalodisca

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|124487976|gb|ABN12071.1| putative mitochondrial ATP synthase gamma-subunit [Maconellicoccus hirsutus]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 79/91 (86%)

Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKF 74
           QI+ IGDKSRAILQRL+G NI+L ANEVGR+PPTFLDA+++A++ S+  FTSGKI+YN+F
Sbjct: 102 QIVCIGDKSRAILQRLFGKNIVLVANEVGRKPPTFLDAARIAEQISRQEFTSGKIVYNRF 161

Query: 75  KSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           KSVVSY TS+LP+++ +++ A+  + +YDSL
Sbjct: 162 KSVVSYNTSELPLYNQSAIAASANISLYDSL 192

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008370|ref|XP_002424979.1| ATP synthase gamma chain isoform 1, putative [Pediculus humanus corporis] gi|212508608|gb|EEB12241.1| ATP synthase gamma chain isoform 1, putative [Pediculus humanus corporis]

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 74/93 (79%), Gaps = 2/93 (2%)

Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYN 72
           +++ IGDKSR ILQRLYG NI+ AANEVGR PPTFLDASKVA E   S Y F  GKIIYN
Sbjct: 130 KVVCIGDKSRGILQRLYGKNILFAANEVGRLPPTFLDASKVANEILKSDYVFNMGKIIYN 189

Query: 73  KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           +FKSVVSY TS++P++ L +V  APKL +YDSL
Sbjct: 190 RFKSVVSYATSEMPLYKLETVNTAPKLSLYDSL 222

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|358443042|gb|AEU11767.1| control protein HCTL028 [Heliconius melpomene]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 75/93 (80%), Gaps = 2/93 (2%)

Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYN 72
           ++I +GDKSR ILQRLYG +II  ANE+GR PPTFLDA+K+A    TS Y+F SGKIIYN
Sbjct: 116 KVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDAAKLANAIMTSGYDFGSGKIIYN 175

Query: 73  KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           KFKSVVSY  SDLP+FS  ++ AAPKL VYDSL
Sbjct: 176 KFKSVVSYAQSDLPLFSKKAIEAAPKLAVYDSL 208

Source: Heliconius melpomene

Species: Heliconius melpomene

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608749|dbj|BAM17986.1| ATP synthase-gamma chain [Papilio xuthus]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 78/101 (77%), Gaps = 3/101 (2%)

Query: 8   NAPSMTN-QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNF 64
           N P   N ++I +GDKSR ILQRLYG +II  ANE+GR PPTFLDA+++A    +S Y+F
Sbjct: 119 NEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDAARLADAVLSSGYDF 178

Query: 65  TSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
            SGKII+NKFKSVVSY  +DLP+FS  +V AAPKL VYDSL
Sbjct: 179 GSGKIIFNKFKSVVSYAQADLPLFSRKAVEAAPKLAVYDSL 219

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372901|gb|AEE61592.1| unknown [Dendroctonus ponderosae]

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 78/100 (78%), Gaps = 2/100 (2%)

Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET--SKYNFTSGKIIYN 72
           +I+ +GDKSRAIL R+YGNNIIL+ANE+GR PPTF+DA+K+A     S Y F SG+I+YN
Sbjct: 126 RIVCVGDKSRAILSRIYGNNIILSANEIGRLPPTFIDAAKLADAVLKSDYKFASGEIVYN 185

Query: 73  KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLWKRCVET 112
           +FKSVVSY T  LP++SL SV  APKL +YDSL    +++
Sbjct: 186 RFKSVVSYETQTLPVYSLESVVTAPKLSIYDSLDDEVIKS 225

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|358443056|gb|AEU11774.1| control protein HCTL028 [Heliconius erato]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 77/101 (76%), Gaps = 3/101 (2%)

Query: 8   NAPSMTN-QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNF 64
           N P   N ++I +GDKSR ILQRLY  +II  ANE+GR PPTFLDA+K+A    TS Y+F
Sbjct: 122 NEPGAENIKVICVGDKSRGILQRLYAKHIISVANEIGRLPPTFLDAAKLANAIMTSGYDF 181

Query: 65  TSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
            SGKIIYNKFKSVVSY  SDLP+FS  ++ +APKL VYDSL
Sbjct: 182 GSGKIIYNKFKSVVSYAQSDLPLFSKKAIESAPKLVVYDSL 222

Source: Heliconius erato

Species: Heliconius erato

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621324|gb|EHJ73192.1| H+ transporting ATP synthase gamma subunit [Danaus plexippus]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 75/93 (80%), Gaps = 2/93 (2%)

Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET--SKYNFTSGKIIYN 72
           ++I +GDKSR ILQRLYG +II  ANE+GR PPTFLDA+K+A     S Y+F SGKIIYN
Sbjct: 127 RVICVGDKSRGILQRLYGKHIITVANEIGRLPPTFLDAAKLANAVMNSGYDFGSGKIIYN 186

Query: 73  KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           KF+SVVSY+ +DLP+FS  ++ +APKL VYDSL
Sbjct: 187 KFRSVVSYSQADLPVFSKKAIESAPKLAVYDSL 219

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
FB|FBgn0020235	297	ATPsyn-gamma "ATP synthase-gam	0.812	0.306	0.634	1.5e-26
WB|WBGene00022089	313	Y69A2AR.18 [Caenorhabditis ele	0.875	0.313	0.5	2.1e-20
ZFIN|ZDB-GENE-030131-8901	292	atp5c1 "ATP synthase, H+ trans	0.803	0.308	0.456	5.7e-20
UNIPROTKB|H9KZF8	263	ATP5C1 "ATP synthase subunit g	0.901	0.384	0.432	1.5e-19
UNIPROTKB|P05631	298	ATP5C1 "ATP synthase subunit g	0.812	0.305	0.473	4e-19
UNIPROTKB|B4DL14	250	ATP5C1 "ATP synthase subunit g	0.928	0.416	0.443	4e-19
UNIPROTKB|P36542	298	ATP5C1 "ATP synthase subunit g	0.928	0.348	0.443	4e-19
UNIPROTKB|Q5RBS9	297	ATP5C1 "ATP synthase subunit g	0.928	0.350	0.433	5.1e-19
UNIPROTKB|Q4R5B0	298	ATP5C1 "ATP synthase subunit g	0.928	0.348	0.415	1.4e-18
RGD|620011	273	Atp5c1 "ATP synthase, H+ trans	0.803	0.329	0.456	4.6e-18

FB|FBgn0020235 ATPsyn-gamma "ATP synthase-gamma chain" [Drosophila melanogaster (taxid:7227)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 59/93 (63%), Positives = 73/93 (78%)

Query:    15 QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSK--YNFTSGKIIYN 72
             ++  +GDKSRAIL RLYG NI++ ANEVGR PPTFLDASK+A E  +  Y++T GKI+YN
Sbjct:   128 KVFCVGDKSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYN 187

Query:    73 KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
             +FKSVVSY  S LPIFS ++V  + KL VYDSL
Sbjct:   188 RFKSVVSYQCSTLPIFSGSTVEKSEKLAVYDSL 220

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=ISS

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

WB|WBGene00022089 Y69A2AR.18 [Caenorhabditis elegans (taxid:6239)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 50/100 (50%), Positives = 68/100 (68%)

Query:     8 NAPSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET--SKYNFT 65
             NA     +++ IGDKSRA LQRLY N+I+L+ NE+GR PP+F DAS  A+    S Y+F 
Sbjct:   124 NAGDKEIRVVAIGDKSRAGLQRLYANSILLSGNEIGRAPPSFADASIAAKAILDSGYDFE 183

Query:    66 SGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
             +G I++N+FK+VVSY TS L I  L ++ A   L  YDS+
Sbjct:   184 TGTILFNRFKTVVSYETSKLQILPLEAIKAKEALSTYDSV 223

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

ZFIN|ZDB-GENE-030131-8901 atp5c1 "ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1" [Danio rerio (taxid:7955)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 42/92 (45%), Positives = 64/92 (69%)

Query:    16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNK 73
             ++ IGDK R +L R +G +I+L   EVGR+PPTF DAS +A E   S Y F  G I+YN+
Sbjct:   125 VVNIGDKLRGLLYRTHGKHILLNCKEVGRKPPTFTDASIIATELLNSGYEFDQGSIVYNR 184

Query:    74 FKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
             F+SV+SY T + P++S+ +V ++  +G+YD +
Sbjct:   185 FRSVISYKTDEKPLYSMDTVASSENMGIYDDI 216

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|H9KZF8 ATP5C1 "ATP synthase subunit gamma" [Gallus gallus (taxid:9031)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 45/104 (43%), Positives = 66/104 (63%)

Query:     4 TSSTNAPSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSK 61
             T+ +NA      ++ +GDK R +LQR +GN  ++   EVGRRPP+F DAS +A E   S 
Sbjct:   115 TNLSNAGKEV-MVVGVGDKIRGLLQRTHGNYFLMTFKEVGRRPPSFGDASVIASELLNSG 173

Query:    62 YNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
             Y F  G +IYN+F+SV+SY T + PI+S  +V  +  L +YD +
Sbjct:   174 YEFDEGSVIYNRFRSVISYKTDEKPIYSFETVAGSESLSIYDDI 217

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IEA

UNIPROTKB|P05631 ATP5C1 "ATP synthase subunit gamma, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 44/93 (47%), Positives = 64/93 (68%)

Query:    15 QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYN 72
             +II +GDK R+IL R + +  ++   EVGRRPPTF DAS +A E   S Y F  G II+N
Sbjct:   129 KIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFN 188

Query:    73 KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
             +F+SV+SY T + PIFSL ++++A  + +YD +
Sbjct:   189 RFRSVISYKTEEKPIFSLDTISSAESMSIYDDI 221

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|B4DL14 ATP5C1 "ATP synthase subunit gamma" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 47/106 (44%), Positives = 66/106 (62%)

Query:     2 SGTSSTNAPSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--T 59
             S  ++  A      ++ IGDK R IL R + +  ++A  EVGR+PPTF DAS +A E   
Sbjct:    69 SEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLN 128

Query:    60 SKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
             S Y F  G II+NKF+SV+SY T + PIFSL +V +A  + +YD +
Sbjct:   129 SGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDI 174

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|P36542 ATP5C1 "ATP synthase subunit gamma, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 47/106 (44%), Positives = 66/106 (62%)

Query:     2 SGTSSTNAPSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--T 59
             S  ++  A      ++ IGDK R IL R + +  ++A  EVGR+PPTF DAS +A E   
Sbjct:   116 SEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLN 175

Query:    60 SKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
             S Y F  G II+NKF+SV+SY T + PIFSL +V +A  + +YD +
Sbjct:   176 SGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDI 221

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS;NAS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0016887 "ATPase activity" evidence=NAS;IDA

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=NAS

GO:0006119 "oxidative phosphorylation" evidence=NAS

GO:0006754 "ATP biosynthetic process" evidence=NAS

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IC;TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=NAS;IDA

UNIPROTKB|Q5RBS9 ATP5C1 "ATP synthase subunit gamma, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 46/106 (43%), Positives = 66/106 (62%)

Query:     2 SGTSSTNAPSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--T 59
             S  ++  A      ++ +GDK R IL R + +  ++A  EVGR+PPTF DAS +A E   
Sbjct:   116 SEVATLTAAGKEVMLVGVGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLN 175

Query:    60 SKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
             S Y F  G II+NKF+SV+SY T + PIFSL +V +A  + +YD +
Sbjct:   176 SGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDI 221

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

UNIPROTKB|Q4R5B0 ATP5C1 "ATP synthase subunit gamma, mitochondrial" [Macaca fascicularis (taxid:9541)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 44/106 (41%), Positives = 66/106 (62%)

Query:     2 SGTSSTNAPSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--T 59
             S  ++  A      ++ IGDK R IL R + +  ++A  EVGR+PPTF DAS +A E   
Sbjct:   116 SEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLN 175

Query:    60 SKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
             S Y F  G +I+N+F+SV+SY T + PIFSL ++ +A  + +YD +
Sbjct:   176 SGYEFDEGSVIFNRFRSVISYKTEEKPIFSLNTIASAESMSIYDDI 221

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

RGD|620011 Atp5c1 "ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1" [Rattus norvegicus (taxid:10116)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 42/92 (45%), Positives = 63/92 (68%)

Query:    16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNK 73
             I+ IG+K ++IL R + +  +++  +VGR+PPTF DAS +A E   S Y F  G II+N+
Sbjct:   105 IVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQ 164

Query:    74 FKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
             FKSV+SY T + PIFS ++V AA  + +YD +
Sbjct:   165 FKSVISYKTEEKPIFSFSTVVAAENMSIYDDI 196

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005740 "mitochondrial envelope" evidence=NAS

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IEA;ISO;IDA

GO:0006119 "oxidative phosphorylation" evidence=NAS

GO:0006172 "ADP biosynthetic process" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=ISO;IDA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO;IMP

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA;IDA

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O01666	ATPG_DROME	No assigned EC number	0.6344	0.8125	0.3063	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	112
cd12151	282	cd12151, F1-ATPase_gamma, mitochondrial ATP syntha	1e-12
TIGR01146	286	TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma	7e-10
pfam00231	288	pfam00231, ATP-synt, ATP synthase	8e-09
PRK05621	284	PRK05621, PRK05621, F0F1 ATP synthase subunit gamm	2e-05
COG0224	287	COG0224, AtpG, F0F1-type ATP synthase, gamma subun	5e-04

>gnl|CDD|213394 cd12151, F1-ATPase_gamma, mitochondrial ATP synthase gamma subunit

 Score = 61.4 bits (150), Expect = 1e-12
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKY---NFTSGKIIYN 72
           +I +G K R  L+R  G NI L  +++G  P  F  AS + +    +         IIYN
Sbjct: 112 LIVVGKKGRDYLKRR-GYNIALPFSDIGDDPTYFEAASIIEELILDFLNGEIDEVYIIYN 170

Query: 73  KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           KFKS +S       +  L       +     S 
Sbjct: 171 KFKSAISQEPVVEQLLPLDKEEEEEESEGSRSD 203

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain of F-ATPases is composed of alpha, beta, gamma, delta, and epsilon (not present in bacteria) subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. Length = 282

>gnl|CDD|233292 TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma subunit

 Score = 54.2 bits (131), Expect = 7e-10
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET----SKYNFTSGKII 70
           +++ IG K R+  +R  G+NI+ +   +    PTF +AS +A +         F    I+
Sbjct: 113 KLVVIGRKGRSFFKR-RGDNIVASVTGLSD-QPTFEEASGIADKLLDAFDSGEFDEVYIV 170

Query: 71  YNKFKSVVSYTTSDLPIFSL 90
           YNKF SV+S   +   +  L
Sbjct: 171 YNKFVSVISQEPTVKQLLPL 190

This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP [Energy metabolism, ATP-proton motive force interconversion]. Length = 286

>gnl|CDD|215808 pfam00231, ATP-synt, ATP synthase

 Score = 51.0 bits (123), Expect = 8e-09
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 8/88 (9%)

Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGK-----II 70
           +I IG K R   +R  G NII     +G   PTF +A+++A E  +  F +G+     ++
Sbjct: 115 LIVIGKKGRDFFKRR-GKNIIAEFTGLGD-KPTFEEAAEIADELIE-LFLNGEYDEVYLV 171

Query: 71  YNKFKSVVSYTTSDLPIFSLASVTAAPK 98
           YNKF + +S   +   +  +       +
Sbjct: 172 YNKFVNALSQEPTVEQLLPIDIEEEEEE 199

Length = 288

>gnl|CDD|235535 PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGK-----I 69
           ++I IG K     +R   N ++     +G +P TF +A  +A++     + +G+     I
Sbjct: 113 KLIVIGRKGVDFFKRRGIN-VVAEYTGLGDQP-TFEEAIGIAKKLLDA-YDNGEFDELYI 169

Query: 70  IYNKFKSVVS 79
           +YNKF + +S
Sbjct: 170 VYNKFVNTLS 179

Length = 284

>gnl|CDD|223302 COG0224, AtpG, F0F1-type ATP synthase, gamma subunit [Energy production and conversion]

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGK-----II 70
           +I IG K     ++  G NI+ +   +G  P +F +A ++A +     F  G+     ++
Sbjct: 112 LILIGKKGIDFFKKR-GYNILESFTGLGDNP-SFEEAIQIADKILDA-FLEGEIDELYLV 168

Query: 71  YNKFKSVVSY 80
           YNKFK+ +S 
Sbjct: 169 YNKFKNALSQ 178

Length = 287

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
COG0224	287	AtpG F0F1-type ATP synthase, gamma subunit [Energy	99.78
KOG1531|consensus	304		99.75
PRK13427	289	F0F1 ATP synthase subunit gamma; Provisional	99.66
PRK14111	290	F0F1 ATP synthase subunit gamma; Provisional	99.64
PRK14110	291	F0F1 ATP synthase subunit gamma; Provisional	99.63
PRK13425	291	F0F1 ATP synthase subunit gamma; Provisional	99.63
PRK13424	291	F0F1 ATP synthase subunit gamma; Provisional	99.63
PF00231	290	ATP-synt: ATP synthase This Pfam entry corresponds	99.62
PRK13422	298	F0F1 ATP synthase subunit gamma; Provisional	99.62
PRK13423	288	F0F1 ATP synthase subunit gamma; Provisional	99.61
PRK13426	291	F0F1 ATP synthase subunit gamma; Provisional	99.6
TIGR01146	287	ATPsyn_F1gamma ATP synthase, F1 gamma subunit. Thi	99.58
PRK05621	284	F0F1 ATP synthase subunit gamma; Validated	99.57
TIGR03323	285	alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit	99.45

>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]

Probab=99.78  E-value=5.5e-19  Score=133.55  Aligned_cols=83  Identities=22%  Similarity=0.356  Sum_probs=74.8

Q ss_pred             CCCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEe
Q psy9628           8 NAPSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTT   82 (112)
Q Consensus         8 ~~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p   82 (112)
                      .++|.++.+++||+||.+||++++. ++...+.++. +.|+|+.+..|++.     .+| ++|+|+|+||+|+|+++|+|
T Consensus       104 ~~~~~~~~li~iG~Kg~~~f~~~~~-~i~~~~~~l~-~~p~~~~~~~i~~~~~~~~~~g-~~d~v~l~yn~f~n~~sq~~  180 (287)
T COG0224         104 KNKGKEVKLILIGKKGIDFFKKRGY-NILESFTGLG-DNPSFEEAIQIADKILDAFLEG-EIDELYLVYNKFKNALSQEP  180 (287)
T ss_pred             hccCCceEEEEEchHHHHHHHhcCc-chhhHhhccc-cCCCHHHHHHHHHHHHHHHhCC-CCceEEEEecccccceeeee
Confidence            4567789999999999999999664 7888899996 67999999999998     678 99999999999999999999


Q ss_pred             EEeeeecCccc
Q psy9628          83 SDLPIFSLASV   93 (112)
Q Consensus        83 ~~~~lLPi~~~   93 (112)
                      ++++|||+.+.
T Consensus       181 ~~~~llP~~~~  191 (287)
T COG0224         181 TVQQLLPLDKI  191 (287)
T ss_pred             eeEEEecCCcc
Confidence            99999999743

>KOG1531|consensus

Probab=99.75  E-value=8.5e-19  Score=130.89  Aligned_cols=101  Identities=50%  Similarity=0.786  Sum_probs=90.7

Q ss_pred             CCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH--hcCCCccEEEEEcccceecceEEeEEeeee
Q psy9628          11 SMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNKFKSVVSYTTSDLPIF   88 (112)
Q Consensus        11 g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~--~~~~~~D~V~IiYn~F~s~isq~p~~~~lL   88 (112)
                      |+++.+++||+|++.+|.|+++..+...+++++..+|+|.++..|++.  ..+++||++.|+||+|+|+++++|...+||
T Consensus       131 ~~e~~vv~iGdK~ra~l~R~~~~~i~ls~~eig~~pptf~~asvia~~il~~~~e~d~~~ivyNkF~SvVs~e~~~~~il  210 (304)
T KOG1531|consen  131 GKEVRVVIIGDKIRAILLRLHPNSILLSINEIGRAPPTFEDASVIADEILLSGYEFDKGSIVYNKFKSVVSYETSEKPIL  210 (304)
T ss_pred             CCceEEEEEchhhhhheeecCchhhhhhHhhcCCCCCcHHHHHHHHHHHHhhhccccceEEEeecchhheeecccccccc
Confidence            789999999999999999999899999999998889999999999998  555699999999999999999999999999


Q ss_pred             cCccccCCCCCCCchhhhhhhhc
Q psy9628          89 SLASVTAAPKLGVYDSLWKRCVE  111 (112)
Q Consensus        89 Pi~~~~~~~~~~~ye~~~~~~~~  111 (112)
                      |++..++.+.+.-|+++++|+++
T Consensus       211 ~l~~i~~s~~l~~~d~iddev~q  233 (304)
T KOG1531|consen  211 PLETIEESESLSCYDSIDDEVLQ  233 (304)
T ss_pred             CHHHhcccccccchhhhhHHHHh
Confidence            99888777777656657777764

>PRK13427 F0F1 ATP synthase subunit gamma; Provisional

Probab=99.66  E-value=4.7e-16  Score=117.92  Aligned_cols=80  Identities=10%  Similarity=0.146  Sum_probs=70.7

Q ss_pred             CCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeE
Q psy9628           9 APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTS   83 (112)
Q Consensus         9 ~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~   83 (112)
                      +.|+++.+++||+||.+||++++ ..+...+.++. ++|+|+.+..|++.     ..+ ++|+|+|+||+|+|+++|+|+
T Consensus       109 ~~~~~~~~~~vG~kg~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~-~~d~v~viy~~f~s~~~q~~~  185 (289)
T PRK13427        109 KKGVNVELHIVGKKGISFFKFAG-EKAEKTYTHID-DKSGYKEAEELANLFMERFANE-SVDAVEIASTVYYSAASQKPE  185 (289)
T ss_pred             hCCCcEEEEEEeHHHHHHHHHcC-CCceeeecccC-CccCHHHHHHHHHHHHHHHHcC-CCCEEEEEecccccceeccee
Confidence            35667899999999999998765 45777888886 68899999999986     677 999999999999999999999


Q ss_pred             EeeeecCc
Q psy9628          84 DLPIFSLA   91 (112)
Q Consensus        84 ~~~lLPi~   91 (112)
                      +++|||++
T Consensus       186 ~~~llP~~  193 (289)
T PRK13427        186 TTRVLPLE  193 (289)
T ss_pred             eEEeeCCC
Confidence            99999995

>PRK14111 F0F1 ATP synthase subunit gamma; Provisional

Probab=99.64  E-value=1.1e-15  Score=115.87  Aligned_cols=79  Identities=18%  Similarity=0.299  Sum_probs=69.6

Q ss_pred             CCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEE
Q psy9628          10 PSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSD   84 (112)
Q Consensus        10 ~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~   84 (112)
                      .|+++.+++||+||++||++++. .+...+.+.. +.|+|+++..|++.     ..+ ++|+|+|+||+|+|+++|+|.+
T Consensus       112 ~~~~~~l~~vG~Kg~~~l~~~~~-~i~~~~~~~~-~~p~~~~~~~i~~~~~~~~~~~-~~d~v~iiy~~f~s~~~~~~~~  188 (290)
T PRK14111        112 MGRTVDVIAIGRKGRDFMVRTGQ-ALVAEFTRLG-DAPKLEAILPVATSAINGFQSG-KYDEVYVLYSEFINTLVQRPTI  188 (290)
T ss_pred             CCCceEEEEEehHHHHHHHHcCC-CceeeeecCC-CCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEecccccceeeeeeE
Confidence            46678899999999999997664 5677777775 67899999999976     577 9999999999999999999999


Q ss_pred             eeeecCc
Q psy9628          85 LPIFSLA   91 (112)
Q Consensus        85 ~~lLPi~   91 (112)
                      .+|||++
T Consensus       189 ~~llP~~  195 (290)
T PRK14111        189 KQLLPIE  195 (290)
T ss_pred             EEecCCC
Confidence            9999995

>PRK14110 F0F1 ATP synthase subunit gamma; Provisional

Probab=99.63  E-value=1.6e-15  Score=115.08  Aligned_cols=80  Identities=18%  Similarity=0.195  Sum_probs=69.4

Q ss_pred             CCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEE
Q psy9628          10 PSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSD   84 (112)
Q Consensus        10 ~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~   84 (112)
                      .|.++.+++||+||.++|++++ ..+...+.++...+++|..+..|++.     ..+ ++|+|+|+||||+|+++|+|++
T Consensus       111 ~~~~~~l~~iG~Kg~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~i~~~l~~~~~~~-~~d~v~iiy~~f~s~~~~~~~~  188 (291)
T PRK14110        111 EGVRVNLILIGRKGVQYFSKRG-YNIIKSYEDVFRKEINFSVVKEVGGILASRYIEE-ETDAVYLINNEMITRATYKPKV  188 (291)
T ss_pred             CCCceEEEEehHHHHHHHHHcC-CCceeeeccccCCCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEecccccceeeeEEE
Confidence            5667889999999999998755 45777777775445699999999975     677 9999999999999999999999


Q ss_pred             eeeecCc
Q psy9628          85 LPIFSLA   91 (112)
Q Consensus        85 ~~lLPi~   91 (112)
                      .+|||++
T Consensus       189 ~~llP~~  195 (291)
T PRK14110        189 RKFLPFE  195 (291)
T ss_pred             EEecCCC
Confidence            9999995

>PRK13425 F0F1 ATP synthase subunit gamma; Provisional

Probab=99.63  E-value=1.8e-15  Score=114.87  Aligned_cols=79  Identities=18%  Similarity=0.219  Sum_probs=70.2

Q ss_pred             CCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEE
Q psy9628          10 PSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSD   84 (112)
Q Consensus        10 ~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~   84 (112)
                      .+.++.+++||+||.++|++++ ..+...+.++. ++|+|..+..|++.     ..+ ++|+|+|+||+|+|+++|+|.+
T Consensus       113 ~~~~~~l~~iG~Kg~~~~~~~~-~~i~~~~~~~~-~~~~~~~a~~i~~~~~~~~~~~-~~d~v~viy~~f~~~~~~~~~~  189 (291)
T PRK13425        113 AKGGVSMICAGTRGFDFFRKRG-YNIVKGYPGVF-QNLDFSVAKEIAETASGMYLRG-EVDKVVVVYNEFKSVLAPNLKS  189 (291)
T ss_pred             cCCceEEEEeeHHHHHHHHHcC-CCceeeecCcC-CCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEeccceeceeeeEEE
Confidence            4557789999999999998655 46788888885 68899999999986     677 9999999999999999999999


Q ss_pred             eeeecCc
Q psy9628          85 LPIFSLA   91 (112)
Q Consensus        85 ~~lLPi~   91 (112)
                      ++|||++
T Consensus       190 ~~llP~~  196 (291)
T PRK13425        190 EVLLPIT  196 (291)
T ss_pred             EEeeCCC
Confidence            9999995

>PRK13424 F0F1 ATP synthase subunit gamma; Provisional

Probab=99.63  E-value=1.9e-15  Score=114.67  Aligned_cols=80  Identities=19%  Similarity=0.256  Sum_probs=71.0

Q ss_pred             CCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEE
Q psy9628          10 PSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSD   84 (112)
Q Consensus        10 ~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~   84 (112)
                      .|+++.+++||+||.++|++++ ..+...+.++. +.|+|..+..|++.     ..+ ++|+|+|+||+|+|+++|+|.+
T Consensus       110 ~~~~~~l~~vG~K~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~-~~d~v~viy~~f~s~~~~~~~~  186 (291)
T PRK13424        110 EGKTVKFYCVGKKGRDAIRKTD-FEIVTAYADQM-TSFDFQLANSIGLEVIDGYLTG-ELDEVVLVYGEFVSMARQLPIT  186 (291)
T ss_pred             CCCceEEEEeeHHHHHHHHHcC-CCeeEeeccCC-CCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEeccccccccCceEE
Confidence            5667889999999999998665 46788888886 68999999999976     677 9999999999999999999999


Q ss_pred             eeeecCcc
Q psy9628          85 LPIFSLAS   92 (112)
Q Consensus        85 ~~lLPi~~   92 (112)
                      ++|||++.
T Consensus       187 ~~llP~~~  194 (291)
T PRK13424        187 LQILPIAP  194 (291)
T ss_pred             EEecCCCc
Confidence            99999963

>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.62  E-value=3.2e-15  Score=113.07  Aligned_cols=80  Identities=34%  Similarity=0.456  Sum_probs=68.6

Q ss_pred             CCCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEe
Q psy9628           8 NAPSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTT   82 (112)
Q Consensus         8 ~~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p   82 (112)
                      ...|.++.+++||+||.+||++++. .+...+.++. +.|+|..+..|++.     ..+ ++|+|+|+||+|+|+++|+|
T Consensus       107 ~~~g~~~~l~~iG~K~~~~~~~~~~-~i~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~-~~d~v~viy~~~~~~~~~~~  183 (290)
T PF00231_consen  107 DDQGKEVKLIVIGKKGRDFLKKRGY-NIIASFNGIS-SDPTFEEASEIAEKLIDLYESG-EIDEVYVIYNKFKSAVSQEP  183 (290)
T ss_dssp             CTTTSEEEEEEESHHHHHHHHCSST-TEEEEEESBT-SS--HHHHHHHHHHHHHHCCCC-S-SEEEEEEEEECSTTEEEE
T ss_pred             cccCCceEEEEeCcchhhhhhhCCC-cceeeeeccc-chhhHHHHHHHHHHHHhhhhcC-CCCeEEEEEEEeccceeeeE
Confidence            3456789999999999999998664 5888888886 78999999999998     567 99999999999999999999


Q ss_pred             EEeeeecC
Q psy9628          83 SDLPIFSL   90 (112)
Q Consensus        83 ~~~~lLPi   90 (112)
                      ++++|||+
T Consensus       184 ~~~~llP~  191 (290)
T PF00231_consen  184 VVEQLLPL  191 (290)
T ss_dssp             EEEEESSS
T ss_pred             Eeeehhhh
Confidence            99999997

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....

>PRK13422 F0F1 ATP synthase subunit gamma; Provisional

Probab=99.62  E-value=2.2e-15  Score=114.68  Aligned_cols=81  Identities=14%  Similarity=0.190  Sum_probs=67.6

Q ss_pred             CCCCCeEEEEeCHhHHHHHhhhcCcceeee--eeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEE
Q psy9628           9 APSMTNQIITIGDKSRAILQRLYGNNIILA--ANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYT   81 (112)
Q Consensus         9 ~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~--~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~   81 (112)
                      +.|.++.+++||+||.+||+++++..+...  +.+.+ ++|+|+.+..|++.     ..+ ++|+|+|+||+|+|+++|+
T Consensus       108 ~~~~~~~l~~iG~K~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~-~~d~v~iiy~~f~s~~~q~  185 (298)
T PRK13422        108 EDRVGVDVCVIGSKAENFFAKLKDVNIVATAHYNDKD-KEGSIRAIGGAVKVMLDKFTAG-EIDRLYMSSNQFVSTIKQR  185 (298)
T ss_pred             hCCCceEEEEEChhHHHHHHHhcCCCceeeeeeccCC-CCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEeccccCCcccc
Confidence            356678899999999999986444455555  44443 57899999999976     677 9999999999999999999


Q ss_pred             eEEeeeecCc
Q psy9628          82 TSDLPIFSLA   91 (112)
Q Consensus        82 p~~~~lLPi~   91 (112)
                      |++++|||++
T Consensus       186 ~~~~~llP~~  195 (298)
T PRK13422        186 PRLQTLLPIQ  195 (298)
T ss_pred             eEEEEeeCCC
Confidence            9999999994

>PRK13423 F0F1 ATP synthase subunit gamma; Provisional

Probab=99.61  E-value=2.7e-15  Score=113.71  Aligned_cols=81  Identities=23%  Similarity=0.244  Sum_probs=70.2

Q ss_pred             CCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeE
Q psy9628           9 APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTS   83 (112)
Q Consensus         9 ~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~   83 (112)
                      ++|+++.+++||+||.++|++++ ..+...+.++. ++|+|+.+..|++.     ..+ ++|+|+|+||+|+|+++|+|.
T Consensus       108 ~~~~~~~l~~vG~k~~~~~~~~~-~~i~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~-~~d~v~iiy~~f~n~~~q~~~  184 (288)
T PRK13423        108 DEFEEISLTTVGRKGREFLKNRG-LIIRKNYGGVV-ANLTYETAALLAQELIEGYLAG-EYDEVYLVYNEFKSVMSQDIT  184 (288)
T ss_pred             hcCCceEEEEecHHHHHHHHHcC-CCceeeecCcC-CCCCHHHHHHHHHHHHHHHhcC-CCCEEEEEeccccccccccee
Confidence            35667889999999999998755 46777777775 67899999999986     577 999999999999999999999


Q ss_pred             EeeeecCcc
Q psy9628          84 DLPIFSLAS   92 (112)
Q Consensus        84 ~~~lLPi~~   92 (112)
                      +++|||++.
T Consensus       185 ~~~llP~~~  193 (288)
T PRK13423        185 VQQLLPIDP  193 (288)
T ss_pred             EEEecCCCc
Confidence            999999963

>PRK13426 F0F1 ATP synthase subunit gamma; Provisional

Probab=99.60  E-value=4.6e-15  Score=112.57  Aligned_cols=77  Identities=16%  Similarity=0.227  Sum_probs=68.7

Q ss_pred             CCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEEee
Q psy9628          12 MTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSDLP   86 (112)
Q Consensus        12 ~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~~~   86 (112)
                      .++.+++||+||.++|++++ ..+...+.... +.|+|+.+..|++.     ..+ ++|+|+|+||+|+|+++|+|++++
T Consensus       112 ~~~~~~~vG~k~~~~~~~~~-~~i~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~-~~d~v~iiy~~f~s~~~q~~~~~~  188 (291)
T PRK13426        112 DNILIYPVGKKIEEAVKKLG-FKVQGDYQTLA-DKPSYEEAAALAMRLMELFLEG-EIDKVELIYHHFKSMGVQVLTRET  188 (291)
T ss_pred             CceEEEEeeHHHHHHHHHcC-CCceEeecccC-CCCCHHHHHHHHHHHHHHHhcC-CCCEEEEEecccccccccceeEEE
Confidence            56789999999999998755 46888887775 67899999999986     677 999999999999999999999999


Q ss_pred             eecCc
Q psy9628          87 IFSLA   91 (112)
Q Consensus        87 lLPi~   91 (112)
                      |||++
T Consensus       189 llPi~  193 (291)
T PRK13426        189 YLPID  193 (291)
T ss_pred             ecCCC
Confidence            99995

>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit

Probab=99.58  E-value=1.2e-14  Score=109.96  Aligned_cols=80  Identities=29%  Similarity=0.481  Sum_probs=69.6

Q ss_pred             CCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEE
Q psy9628          10 PSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSD   84 (112)
Q Consensus        10 ~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~   84 (112)
                      .+.++.+++||+||.++|++++ ..+...+.+.. ++++|+.+..|++.     ..+ ++|+|+|+||+|+|+++|+|.+
T Consensus       109 ~~~~~~l~~vG~k~~~~l~~~~-~~i~~~~~~~~-~~~~~~~~~~i~~~i~~~~~~~-~~d~v~viy~~f~~~~~~~~~~  185 (287)
T TIGR01146       109 AGKEVKLVVIGRKGKSFFKRRG-DNIVLSITGLS-DQPTFEEASGIADKLLDAFASG-EFDEVYIVYNKFVSSISQEPTV  185 (287)
T ss_pred             cCCceEEEEeeHHHHHHHHHcC-CCeeEeecccC-CCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEecccccceeeeEEE
Confidence            4556789999999999998654 46777887775 68899999999987     577 9999999999999999999999


Q ss_pred             eeeecCcc
Q psy9628          85 LPIFSLAS   92 (112)
Q Consensus        85 ~~lLPi~~   92 (112)
                      .+|||++.
T Consensus       186 ~~llP~~~  193 (287)
T TIGR01146       186 KQLLPLSE  193 (287)
T ss_pred             EEeeCCCc
Confidence            99999963

This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP.

>PRK05621 F0F1 ATP synthase subunit gamma; Validated

Probab=99.57  E-value=1.3e-14  Score=109.60  Aligned_cols=80  Identities=25%  Similarity=0.378  Sum_probs=70.1

Q ss_pred             CCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEE
Q psy9628          10 PSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSD   84 (112)
Q Consensus        10 ~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~   84 (112)
                      +|.++.+++||+||.++|++++. .+...+.+.. +.|+|..+..|++.     ..+ ++|+|+|+||+|+|+++|+|.+
T Consensus       108 ~~~~~~l~~iG~k~~~~l~~~~~-~i~~~~~~~~-~~~~~~~~~~i~~~i~~~~~~~-~~~~i~viy~~f~~~~~~~~~~  184 (284)
T PRK05621        108 QGKEVKLIVIGRKGVDFFKRRGI-NVVAEYTGLG-DQPTFEEAIGIAKKLLDAYDNG-EFDELYIVYNKFVNTLSQEPTV  184 (284)
T ss_pred             cCCceEEEEehHHHHHHHHHcCC-CceeeeeccC-CCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEecccccceecceEE
Confidence            45678899999999999987664 4777787776 57899999999986     577 9999999999999999999999


Q ss_pred             eeeecCcc
Q psy9628          85 LPIFSLAS   92 (112)
Q Consensus        85 ~~lLPi~~   92 (112)
                      ++|||++.
T Consensus       185 ~~llP~~~  192 (284)
T PRK05621        185 EQLLPLEK  192 (284)
T ss_pred             EEeCCCCc
Confidence            99999963

>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma

Probab=99.45  E-value=4.5e-13  Score=101.47  Aligned_cols=74  Identities=15%  Similarity=0.116  Sum_probs=61.4

Q ss_pred             CCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----h----cCCCccEEEEEcccceecceEEe
Q psy9628          12 MTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----T----SKYNFTSGKIIYNKFKSVVSYTT   82 (112)
Q Consensus        12 ~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~----~~~~~D~V~IiYn~F~s~isq~p   82 (112)
                      .++.+++||+||.++|++++. .+...+.    ..+++..+..|++.     .    .+ ++|+|+|+||+|+|+++|+|
T Consensus       104 ~~~~~~~iG~K~~~~~~~~~~-~i~~~~~----~~~~~~~~~~i~~~i~~~~~~~~~~~-~~d~v~iiY~~f~s~~~~~~  177 (285)
T TIGR03323       104 GEATIWAVGERVASRLEDSGL-TIGELFR----LPNSVGAITPLVSELLIEVEARREQG-QLAELYLFFNRPSSGGSYEP  177 (285)
T ss_pred             CCeEEEEECHHHHHHHHHcCC-CceEeec----CcCCHHHHHHHHHHHHHHHHhhhhcC-CCcEEEEEecccccCcccce
Confidence            456899999999999986553 4655553    34478888888865     3    77 99999999999999999999


Q ss_pred             EEeeeecCc
Q psy9628          83 SDLPIFSLA   91 (112)
Q Consensus        83 ~~~~lLPi~   91 (112)
                      ++++|||++
T Consensus       178 ~~~~llP~~  186 (285)
T TIGR03323       178 TCQRLLPLD  186 (285)
T ss_pred             eeEEeeCCC
Confidence            999999995

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
1cow_G	272	Bovine Mitochondrial F1-Atpase Complexed With Aurov		2e-21
2jdi_G	273	Ground State Structure Of F1-Atpase From Bovine Hea		2e-21
2w6e_G	298	Low Resolution Structures Of Bovine Mitochondrial F		2e-21
2f43_G	273	Rat Liver F1-atpase Length = 273		1e-19
1mab_G	270	Rat Liver F1-Atpase Length = 270		1e-19
3oe7_G	278	Structure Of Four Mutant Forms Of Yeast F1 Atpase:		1e-07
2xok_G	311	Refined Structure Of Yeast F1c10 Atpase Complex To		1e-07
2hld_G	278	Crystal Structure Of Yeast Mitochondrial F1-Atpase		1e-07

>pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 272

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYN 72
           +II +GDK R+IL R + +  ++   EVGRRPPTF DAS +A E   S Y F  G II+N
Sbjct: 104 KIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFN 163
Query: 73  KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           +F+SV+SY T + PIFSL ++++A  + +YD +
Sbjct: 164 RFRSVISYKTEEKPIFSLDTISSAESMSIYDDI 196

>pdb|2JDI|G Chain G, Ground State Structure Of F1-Atpase From Bovine Heart Mitochondria (Bovine F1-Atpase Crystallised In The Absence Of Azide) Length = 273

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYN 72
           +II +GDK R+IL R + +  ++   EVGRRPPTF DAS +A E   S Y F  G II+N
Sbjct: 104 KIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFN 163
Query: 73  KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           +F+SV+SY T + PIFSL ++++A  + +YD +
Sbjct: 164 RFRSVISYKTEEKPIFSLDTISSAESMSIYDDI 196

>pdb|2W6E|G Chain G, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 298

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYN 72
           +II +GDK R+IL R + +  ++   EVGRRPPTF DAS +A E   S Y F  G II+N
Sbjct: 129 KIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFN 188
Query: 73  KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           +F+SV+SY T + PIFSL ++++A  + +YD +
Sbjct: 189 RFRSVISYKTEEKPIFSLDTISSAESMSIYDDI 221

>pdb|2F43|G Chain G, Rat Liver F1-atpase Length = 273

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNK 73
           I+ IG+K ++IL R + +  +++  +VGR+PPTF DAS +A E   S Y F  G II+N+
Sbjct: 105 IVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQ 164
Query: 74  FKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           FKSV+SY T + PIFS ++V AA  + +YD +
Sbjct: 165 FKSVISYKTEEKPIFSFSTVVAAENMSIYDDI 196

>pdb|1MAB|G Chain G, Rat Liver F1-Atpase Length = 270

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNK 73
           I+ IG+K ++IL R + +  +++  +VGR+PPTF DAS +A E   S Y F  G II+N+
Sbjct: 102 IVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQ 161
Query: 74  FKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
           FKSV+SY T + PIFS ++V AA  + +YD +
Sbjct: 162 FKSVISYKTEEKPIFSFSTVVAAENMSIYDDI 193

>pdb|3OE7|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Gamma-I270t Length = 278

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE----TSKYNFTSGKIIY 71
           I+TIGDK +  L R + NNI L+ N +G+  PTF +++ +A +         +    I Y
Sbjct: 107 IVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFY 166
Query: 72  NKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD 103
           N   S +S+  S+ PIF+  ++  +P  G ++
Sbjct: 167 NDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFE 198

>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 311

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE----TSKYNFTSGKIIY 71
           I+TIGDK +  L R + NNI L+ N +G+  PTF +++ +A +         +    I Y
Sbjct: 140 IVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFY 199
Query: 72  NKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD 103
           N   S +S+  S+ PIF+  ++  +P  G ++
Sbjct: 200 NDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFE 231

>pdb|2HLD|G Chain G, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 278

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 16  IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE----TSKYNFTSGKIIY 71
           I+TIGDK +  L R + NNI L+ N +G+  PTF +++ +A +         +    I Y
Sbjct: 107 IVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFY 166
Query: 72  NKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD 103
           N   S +S+  S+ PIF+  ++  +P  G ++
Sbjct: 167 NDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFE 198

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
2ck3_G	272	ATP synthase subunit gamma\, mitochondrial; hydrol	6e-22
3oee_G	278	ATP synthase subunit gamma; ATP phosphatase, F1F0	5e-21
2xok_G	311	ATP synthase subunit gamma, mitochondrial; hydrola	8e-21
1fs0_G	230	ATP synthase gamma subunit; coiled coil, epsilon,	6e-08
3oaa_G	286	ATP synthase gamma chain; rossmann fold, hydrolase	1e-07
2qe7_G	286	ATP synthase subunit gamma; blockage of ATP hydrol	3e-07

>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ... Length = 272

 Score = 86.0 bits (214), Expect = 6e-22
 Identities = 44/91 (48%), Positives = 63/91 (69%), Gaps = 2/91 (2%)

Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYN 72
           +II +GDK R+IL R + +  ++   EVGRRPPTF DAS +A E   S Y F  G II+N
Sbjct: 104 KIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFN 163

Query: 73  KFKSVVSYTTSDLPIFSLASVTAAPKLGVYD 103
           +F+SV+SY T + PIFSL ++++A  + +YD
Sbjct: 164 RFRSVISYKTEEKPIFSLDTISSAESMSIYD 194

>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 3oe7_G* Length = 278

 Score = 83.7 bits (208), Expect = 5e-21
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET----SKYNFTSGKII 70
            I+TIGDK +  L R + NNI L+ N +G+  PTF +++ +A +         +    I 
Sbjct: 106 DIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIF 165

Query: 71  YNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD 103
           YN   S +S+  S+ PIF+  ++  +P  G ++
Sbjct: 166 YNDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFE 198

>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Length = 311

 Score = 83.4 bits (207), Expect = 8e-21
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET----SKYNFTSGKII 70
            I+TIGDK +  L R + NNI L+ N +G+  PTF +++ +A +         +    I 
Sbjct: 139 DIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIF 198

Query: 71  YNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD 103
           YN   S +S+  S+ PIF+  ++  +P  G ++
Sbjct: 199 YNDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFE 231

>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1 Length = 230

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGK-----I 69
            +  IG K  +    + GN ++     +G  P +  +     +   +  +  G+     I
Sbjct: 96  DLAMIGSKGVSFFNSVGGN-VVAQVTGMGDNP-SLSELIGPVKVMLQA-YDEGRLDKLYI 152

Query: 70  IYNKFKSVVS 79
           + NKF + +S
Sbjct: 153 VSNKFINTMS 162

>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} Length = 286

 Score = 47.1 bits (113), Expect = 1e-07
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGK-----I 69
            +  IG K  +    + GN ++     +G  P +  +     +   +  +  G+     I
Sbjct: 113 DLAMIGSKGVSFFNSVGGN-VVAQVTGMGDNP-SLSELIGPVKVMLQA-YDEGRLDKLYI 169

Query: 70  IYNKFKSVVS 79
           + NKF + +S
Sbjct: 170 VSNKFINTMS 179

>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Length = 286

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 15  QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGK-----I 69
            I  +G K R   ++     ++     +   P +  +   +AQ      F         I
Sbjct: 114 VIFAVGRKGRDFFKKRGYP-VVEEVTGISDTP-SLTEIQDIAQSAIGM-FADETFDKLTI 170

Query: 70  IYNKFKSVVS 79
            YN+F S + 
Sbjct: 171 FYNEFVSPIV 180

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
1fs0_G	230	ATP synthase gamma subunit; coiled coil, epsilon,	99.81
3oee_G	278	ATP synthase subunit gamma; ATP phosphatase, F1F0	99.78
3oaa_G	286	ATP synthase gamma chain; rossmann fold, hydrolase	99.77
2ck3_G	272	ATP synthase subunit gamma\, mitochondrial; hydrol	99.73
2xok_G	311	ATP synthase subunit gamma, mitochondrial; hydrola	99.72
2qe7_G	286	ATP synthase subunit gamma; blockage of ATP hydrol	99.68

>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1

Probab=99.81  E-value=1.2e-19  Score=132.38  Aligned_cols=81  Identities=15%  Similarity=0.245  Sum_probs=72.0

Q ss_pred             CCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeE
Q psy9628           9 APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTS   83 (112)
Q Consensus         9 ~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~   83 (112)
                      ++|+++.+++||+||++||++++ ..+...+.+++ +.|+|.+|..|++.     ..| ++|+|+|+||+|+|+++|+|+
T Consensus        90 ~~g~~~~l~~vG~Kg~~~~~~~~-~~i~~~~~~~~-~~p~~~~a~~i~~~i~~~~~~g-~~d~v~lvYn~f~s~~~q~p~  166 (230)
T 1fs0_G           90 DKGVQCDLAMIGSKGVSFFNSVG-GNVVAQVTGMG-DNPSLSELIGPVKVMLQAYDEG-RLDKLYIVSNKFINTMSQVPT  166 (230)
T ss_dssp             HTTCEEEEEEESHHHHHHHHHHC-CCEEEEECCCT-TCCCSHHHHHHHHHHHHHHHTT-SCSCEEEEEEEEEETTEEEEE
T ss_pred             cCCCcEEEEEEeHHHHHHHHhCC-CceEEeecCCC-CCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEEeeecccEEeeEE
Confidence            35678899999999999999875 46888888886 68999999999988     467 999999999999999999999


Q ss_pred             EeeeecCcc
Q psy9628          84 DLPIFSLAS   92 (112)
Q Consensus        84 ~~~lLPi~~   92 (112)
                      +.+|||++.
T Consensus       167 ~~~lLP~~~  175 (230)
T 1fs0_G          167 ISQLLPLPA  175 (230)
T ss_dssp             EEEEESCC-
T ss_pred             EEEecCCCh
Confidence            999999964

>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} SCOP: c.49.2.0 PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 4b2q_G* 3oe7_G*

Probab=99.78  E-value=4.8e-19  Score=132.58  Aligned_cols=80  Identities=34%  Similarity=0.556  Sum_probs=70.9

Q ss_pred             CeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEEeee
Q psy9628          13 TNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSDLPI   87 (112)
Q Consensus        13 ~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~~~l   87 (112)
                      ++.+++||+||++||++.++..+...+.+++.+.|+|.+|..|++.     ..| ++|+|+||||+|+|+++|+|+..+|
T Consensus       104 ~~~l~~vG~Kg~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~~i~~~~~~g-~~d~v~ivyn~f~s~~~q~~~~~~l  182 (278)
T 3oee_G          104 NADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAG-TYPKISIFYNDPVSSLSFEPSEKPI  182 (278)
T ss_dssp             TCEEEEESHHHHHHHHHHCTTTEEEEECSCSSSCCCHHHHHHHHHHHHHTTCGG-GCSEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CeEEEEEehHHHHHHHHcCCCceEEeeccCCCCCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEecccccceeeeeEEEec
Confidence            5889999999999999866556777888874478999999999998     467 9999999999999999999999999


Q ss_pred             ecCccc
Q psy9628          88 FSLASV   93 (112)
Q Consensus        88 LPi~~~   93 (112)
                      ||++..
T Consensus       183 lP~~~~  188 (278)
T 3oee_G          183 FNAKTI  188 (278)
T ss_dssp             CCHHHH
T ss_pred             CCCCcc
Confidence            999653

>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1}

Probab=99.77  E-value=1.8e-18  Score=129.89  Aligned_cols=82  Identities=16%  Similarity=0.263  Sum_probs=73.1

Q ss_pred             CCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeE
Q psy9628           9 APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTS   83 (112)
Q Consensus         9 ~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~   83 (112)
                      ++|.++.+++||+||++||++++. .+...+.+++ +.|+|.++..|++.     ..| ++|+|+||||+|+|+++|+|+
T Consensus       107 ~~~~~~~l~~vG~Kg~~~~~~~~~-~i~~~~~~~~-~~p~~~~~~~i~~~~~~~~~~g-~~d~v~lvyn~f~s~~~q~~~  183 (286)
T 3oaa_G          107 DKGVQCDLAMIGSKGVSFFNSVGG-NVVAQVTGMG-DNPSLSELIGPVKVMLQAYDEG-RLDKLYIVSNKFINTMSQVPT  183 (286)
T ss_dssp             TTTCEEEEEEESHHHHHHHHHHCC-CEEEEECCCT-TCCCHHHHHHHHHHHHHHHHTT-SCSEEEEEEEEEEETTEEEEE
T ss_pred             hCCCceEEEEeeHHHHHHHHHcCC-CeEEeecccc-CCCCHHHHHHHHHHHHHHHhcC-CCCEEEEEEccccccccccee
Confidence            356789999999999999998776 5778888886 68999999999987     578 999999999999999999999


Q ss_pred             EeeeecCccc
Q psy9628          84 DLPIFSLASV   93 (112)
Q Consensus        84 ~~~lLPi~~~   93 (112)
                      +.+|||++..
T Consensus       184 ~~~lLPl~~~  193 (286)
T 3oaa_G          184 ISQLLPLPAS  193 (286)
T ss_dssp             EEECSSCCCC
T ss_pred             EEEecCCCcc
Confidence            9999999754

>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ...

Probab=99.73  E-value=5.2e-19  Score=132.04  Aligned_cols=83  Identities=48%  Similarity=0.792  Sum_probs=45.5

Q ss_pred             CCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH--h-cCCCccEEEEEcccceecceEEeEEe
Q psy9628           9 APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--T-SKYNFTSGKIIYNKFKSVVSYTTSDL   85 (112)
Q Consensus         9 ~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~--~-~~~~~D~V~IiYn~F~s~isq~p~~~   85 (112)
                      ++|+++.+++||+||++||+++.+..+...|.+++..+|+|+++..|++.  . .+ ++|+|+|+||+|+|+++|+|++.
T Consensus        98 ~~g~~~~l~~vG~K~~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~~~~~~~~-~~d~v~ivyn~f~s~~~q~p~~~  176 (272)
T 2ck3_G           98 AAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGY-EFDEGSIIFNRFRSVISYKTEEK  176 (272)
T ss_dssp             -------CCCBSHHHHHHC----------CBCSCSSSCCCHHHHHHHHHHC-----------CCCCCEECSSSCEECC--
T ss_pred             ccCCceEEEEecHHHHHHHHhccCCceeeeecccCCCCCCHHHHHHHHHHHHHccC-CCceEEEEeeccccccceeeeee
Confidence            45667889999999999998633346777888886225999999999999  3 35 99999999999999999999999


Q ss_pred             eeecCcc
Q psy9628          86 PIFSLAS   92 (112)
Q Consensus        86 ~lLPi~~   92 (112)
                      +|||++.
T Consensus       177 ~lLPl~~  183 (272)
T 2ck3_G          177 PIFSLDT  183 (272)
T ss_dssp             -------
T ss_pred             eccCCCc
Confidence            9999964

>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.4e-17  Score=126.34  Aligned_cols=76  Identities=36%  Similarity=0.567  Sum_probs=67.2

Q ss_pred             EEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEEeeeecC
Q psy9628          16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSL   90 (112)
Q Consensus        16 l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~~~lLPi   90 (112)
                      +++||+||++||+++++..+...+.+++...|+|.+|..|++.     ..+ ++|+|+|+||+|+|+++|+|++.+|||+
T Consensus       140 l~~VG~Kg~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~~i~~~~~~g-~~d~v~lvYn~f~s~~~q~p~~~~lLPl  218 (311)
T 2xok_G          140 IVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAG-TYPKISIFYNDPVSSLSFEPSEKPIFNA  218 (311)
T ss_dssp             EEEESHHHHHHHHTTSTTTEEEEEESCTTSCCCHHHHHHHHHHHHHTTCCT-TCSEEEEEEEECSSSSCCEEEEEEECCH
T ss_pred             EEEechHHHHHHHHhcCCCeEEEecccCCCCCCHHHHHHHHHHHHHHHhcC-CcceEEEEeeccccceeeeEEEEEccCC
Confidence            9999999999999853456888888886338999999999998     466 9999999999999999999999999998


Q ss_pred             cc
Q psy9628          91 AS   92 (112)
Q Consensus        91 ~~   92 (112)
                      +.
T Consensus       219 ~~  220 (311)
T 2xok_G          219 KT  220 (311)
T ss_dssp             HH
T ss_pred             cc
Confidence            63

>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}

Probab=99.68  E-value=2.4e-18  Score=129.16  Aligned_cols=81  Identities=19%  Similarity=0.347  Sum_probs=71.1

Q ss_pred             CCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeE
Q psy9628           9 APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTS   83 (112)
Q Consensus         9 ~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~   83 (112)
                      ++|.++.+++||+||++||++++ ..+...+.+++ +.|+|.+|..|++.     ..| ++|+|+||||+|+|+++|+|+
T Consensus       108 ~~~~~~~~~~iG~Kg~~~~~~~~-~~i~~~~~~~~-~~p~~~~a~~i~~~i~~~~~~~-~~d~v~lvyn~f~s~~~q~~~  184 (286)
T 2qe7_G          108 QSKDEYVIFAVGRKGRDFFKKRG-YPVVEEVTGIS-DTPSLTEIQDIAQSAIGMFADE-TFDKLTIFYNEFVSPIVQRPV  184 (286)
T ss_dssp             TTSSCCCCCCCSHHHHHHHHSSS-SCCSCCCSCCC-SSCCSTTTHHHHHHHHHHHSSS-SCSCCCCCCCCCSBTTBCCCC
T ss_pred             ccCCceEEEEechHHHHHHHHcC-CCceeeeccCC-CCCCHHHHHHHHHHHHHHHhcC-CcceEEEEEeecccceeeeeE
Confidence            45677899999999999999875 45777888876 58999999999987     467 999999999999999999999


Q ss_pred             EeeeecCcc
Q psy9628          84 DLPIFSLAS   92 (112)
Q Consensus        84 ~~~lLPi~~   92 (112)
                      +.+|||++.
T Consensus       185 ~~~lLP~~~  193 (286)
T 2qe7_G          185 EKQLLPLTS  193 (286)
T ss_dssp             CCCCSSCCC
T ss_pred             EEEecCCCc
Confidence            999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1fs0g_	230	ATP synthase (F1-ATPase), gamma subunit {Escherich	99.71
d2jdig1	272	ATP synthase (F1-ATPase), gamma subunit {Cow (Bos	99.38

>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.8e-17  Score=118.48  Aligned_cols=82  Identities=16%  Similarity=0.263  Sum_probs=71.0

Q ss_pred             CCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeE
Q psy9628           9 APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTS   83 (112)
Q Consensus         9 ~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~   83 (112)
                      ..|.++.+++||+||.+|+++++. .+...+.... +.|++.++..|++.     ..+ ++|+|+||||+|+|+++|+|+
T Consensus        90 ~~~~~~~~~~vGkk~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~-~~d~v~iiYn~f~s~~~q~p~  166 (230)
T d1fs0g_          90 DKGVQCDLAMIGSKGVSFFNSVGG-NVVAQVTGMG-DNPSLSELIGPVKVMLQAYDEG-RLDKLYIVSNKFINTMSQVPT  166 (230)
T ss_dssp             HTTCEEEEEEESHHHHHHHHHHCC-CEEEEECCCT-TCCCSHHHHHHHHHHHHHHHTT-SCSCEEEEEEEEEETTEEEEE
T ss_pred             hcCCceeEEEeeeeehhHHHhcCC-ceeeecccCc-cCccHHHHHHHHHHHHHHHhcC-CceEEEEEeccccccccccce
Confidence            356788999999999999999875 5666776775 78999999999987     577 999999999999999999999


Q ss_pred             EeeeecCccc
Q psy9628          84 DLPIFSLASV   93 (112)
Q Consensus        84 ~~~lLPi~~~   93 (112)
                      +++|||++..
T Consensus       167 ~~~llP~~~~  176 (230)
T d1fs0g_         167 ISQLLPLPAS  176 (230)
T ss_dssp             EEEEESCC--
T ss_pred             eeeeeccccc
Confidence            9999999754

>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.38  E-value=4.4e-14  Score=102.33  Aligned_cols=86  Identities=47%  Similarity=0.785  Sum_probs=43.5

Q ss_pred             CCCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH---hcCCCccEEEEEcccceecceEEeEE
Q psy9628           8 NAPSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE---TSKYNFTSGKIIYNKFKSVVSYTTSD   84 (112)
Q Consensus         8 ~~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~---~~~~~~D~V~IiYn~F~s~isq~p~~   84 (112)
                      ...|..+.++++|+||.+++++.+...+...+.......+++..+..+...   ..+ ++|+|+|+||+|+|+++|.|+.
T Consensus        97 ~~~~~~~~l~~~G~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~d~v~i~y~~f~~~~~q~p~~  175 (272)
T d2jdig1          97 AAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGY-EFDEGSIIFNRFRSVISYKTEE  175 (272)
T ss_dssp             --------CCCBSHHHHHHC----------CBCSCSSSCCCHHHHHHHHHHC-----------CCCCCEECSSSCEECC-
T ss_pred             hccCCceEEEecccchhhhhhhcccceeeeeeeecCCCCchhHHHHHHHHHHHHhhh-hcceeEEEeeccccccccccee
Confidence            445677889999999999998766556666666665456899999888777   445 8999999999999999999999


Q ss_pred             eeeecCcccc
Q psy9628          85 LPIFSLASVT   94 (112)
Q Consensus        85 ~~lLPi~~~~   94 (112)
                      .+|+|++...
T Consensus       176 ~~l~p~~~~~  185 (272)
T d2jdig1         176 KPIFSLDTIS  185 (272)
T ss_dssp             ----------
T ss_pred             eccccccccc
Confidence            9999986543