Psyllid ID: psy9638

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-----
Protein Sequence
MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFMERMLQPCGPPPEKPEE
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MGDRYNIYSQLEHLqskyvgtghadttkFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFMermlqpcgpppekpee
Flexible Loop (DISEMBL)
MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFMErmlqpcgpppekpee
Low Complexity Region (SEG)
MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFMERMLQPCGPPPEKPEE
Disordered region (IsUnstruct)
****YNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFME***************
Disordered Region (DISOPRED)
**DRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFMERML************
Disordered Region (DISEMBL)
MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFMERMLQP**********
Disordered Region (DISPRO)
*GDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFMERMLQPCGPP******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFMERMLQPCGPPPEKPEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	85	2.2.26 [Sep-21-2011]
Q9VHI4	85	Probable splicing factor	yes	N/A	1.0	1.0	0.823	5e-38
Q9BWJ5	86	Splicing factor 3B subuni	yes	N/A	1.0	0.988	0.788	7e-37
Q56K13	86	Splicing factor 3B subuni	yes	N/A	1.0	0.988	0.788	7e-37
Q923D4	86	Splicing factor 3B subuni	yes	N/A	1.0	0.988	0.776	9e-36
P58728	87	Uncharacterized protein A	yes	N/A	0.976	0.954	0.698	3e-30
Q9LW64	87	Uncharacterized protein A	yes	N/A	0.976	0.954	0.686	7e-30
Q55BF5	94	Splicing factor 3B subuni	yes	N/A	0.952	0.861	0.580	2e-24
Q9P7R6	85	Uncharacterized protein C	yes	N/A	0.941	0.941	0.475	2e-18

>sp|Q9VHI4|SF3B5_DROME Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1

 Score =  155 bits (393), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 70/85 (82%), Positives = 78/85 (91%)

Query: 1  MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
          MG+RYNI+SQLEHLQSKY+GTGHADTTKFEWL N HRDS ASYMGHY++LN F+I ENE+
Sbjct: 1  MGERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENES 60

Query: 61 KARVRFNFMERMLQPCGPPPEKPEE 85
          KARVRFN MERMLQPCGPPPEK E+
Sbjct: 61 KARVRFNLMERMLQPCGPPPEKLED 85

Drosophila melanogaster (taxid: 7227)

>sp|Q9BWJ5|SF3B5_HUMAN Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1

 Score =  152 bits (383), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 67/85 (78%), Positives = 77/85 (90%)

Query: 1  MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
          M DRY I+SQLEHLQSKY+GTGHADTTK+EWLVN HRDSY SYMGH+++LN F+I ENE+
Sbjct: 1  MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60

Query: 61 KARVRFNFMERMLQPCGPPPEKPEE 85
          KARVRFN ME+MLQPCGPP +KPEE
Sbjct: 61 KARVRFNLMEKMLQPCGPPADKPEE 85

Homo sapiens (taxid: 9606)

>sp|Q56K13|SF3B5_BOVIN Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1

 Score =  152 bits (383), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 67/85 (78%), Positives = 77/85 (90%)

Query: 1  MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
          M DRY I+SQLEHLQSKY+GTGHADTTK+EWLVN HRDSY SYMGH+++LN F+I ENE+
Sbjct: 1  MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60

Query: 61 KARVRFNFMERMLQPCGPPPEKPEE 85
          KARVRFN ME+MLQPCGPP +KPEE
Sbjct: 61 KARVRFNLMEKMLQPCGPPADKPEE 85

Bos taurus (taxid: 9913)

>sp|Q923D4|SF3B5_MOUSE Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1

 Score =  148 bits (374), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 76/85 (89%)

Query: 1  MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
          M DRY I+SQLEHLQSKY+GTGHADTTK+EWLVN HRDSY SYMGH+++LN F+I ENE+
Sbjct: 1  MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60

Query: 61 KARVRFNFMERMLQPCGPPPEKPEE 85
          KARVRFN ME+MLQP GPP +KPEE
Sbjct: 61 KARVRFNLMEKMLQPSGPPADKPEE 85

Mus musculus (taxid: 10090)

>sp|P58728|SF3BB_ARATH Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 70/83 (84%)

Query: 3  DRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKA 62
          DR+NI SQLEHLQ+KYVGTGHAD ++FEW VNI RDSYASY+GHY ML+ F+I ENE+  
Sbjct: 5  DRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIG 64

Query: 63 RVRFNFMERMLQPCGPPPEKPEE 85
          R R+NFM++ML PCG PPE+ EE
Sbjct: 65 RERYNFMQKMLLPCGLPPEREEE 87

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW64|SF3BA_ARATH Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=3 SV=1

 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 70/83 (84%)

Query: 3  DRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKA 62
          DR+NI SQLEHLQ+KYVGTGHAD ++FEW VNI RDSYASY+GHY ML+ F+I ENE+  
Sbjct: 5  DRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIG 64

Query: 63 RVRFNFMERMLQPCGPPPEKPEE 85
          R R+NFM++ML PCG PPE+ +E
Sbjct: 65 RERYNFMQKMLLPCGLPPEREDE 87

Arabidopsis thaliana (taxid: 3702)

>sp|Q55BF5|SF3B5_DICDI Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 63/81 (77%)

Query: 1  MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
          M +R ++ SQLEHLQ +YVGTGHAD +K EWL N HRDS +S++GH + L+LFSI ENE+
Sbjct: 1  MSERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENES 60

Query: 61 KARVRFNFMERMLQPCGPPPE 81
            RVR+N + +M+ PCGP P+
Sbjct: 61 VGRVRYNTLTKMISPCGPAPK 81

Dictyostelium discoideum (taxid: 44689)

>sp|Q9P7R6|YHV5_SCHPO Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC211.05 PE=3 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 55/80 (68%)

Query: 1  MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
          M DR    ++LE LQ++YVG G+A TTK+EW+VN HRD+ +S +GH  +L   +    E 
Sbjct: 1  MADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEP 60

Query: 61 KARVRFNFMERMLQPCGPPP 80
          + +VR N +E+M+ PCGPPP
Sbjct: 61 RVQVRKNLLEKMIMPCGPPP 80

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
156536893	85	PREDICTED: probable splicing factor 3B s	1.0	1.0	0.847	5e-38
242022868	85	conserved hypothetical protein [Pediculu	1.0	1.0	0.835	7e-38
380030462	85	PREDICTED: probable splicing factor 3B s	1.0	1.0	0.835	1e-37
307175620	85	Probable splicing factor 3B subunit 5 [C	1.0	1.0	0.823	2e-37
195038075	85	GH18222 [Drosophila grimshawi] gi|195111	1.0	1.0	0.835	8e-37
241833905	138	pre-mRNA splicing factor SF3B 10 kDa sub	1.0	0.615	0.8	1e-36
442761693	92	Putative pre-mrna splicing factor sf3b 1	1.0	0.923	0.8	2e-36
68051667	90	IP03424p [Drosophila melanogaster]	1.0	0.944	0.823	2e-36
24645240	85	CG11985 [Drosophila melanogaster] gi|194	1.0	1.0	0.823	2e-36
226470382	85	putative splicing factor 3B subunit 5 [S	0.988	0.988	0.797	3e-36

>gi|156536893|ref|XP_001607092.1| PREDICTED: probable splicing factor 3B subunit 5-like [Nasonia vitripennis]

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/85 (84%), Positives = 80/85 (94%)

Query: 1  MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
          MG+RYNI+SQLEHLQSKY+GTGHADTTKFEWLVN HRDS +SYMGHY++LN FSI ENEA
Sbjct: 1  MGERYNIHSQLEHLQSKYIGTGHADTTKFEWLVNQHRDSCSSYMGHYDLLNFFSIAENEA 60

Query: 61 KARVRFNFMERMLQPCGPPPEKPEE 85
          KARVRFN ME+MLQPCGPPPEKPE+
Sbjct: 61 KARVRFNLMEKMLQPCGPPPEKPED 85

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022868|ref|XP_002431860.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517192|gb|EEB19122.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 71/85 (83%), Positives = 80/85 (94%)

Query: 1  MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
          MGDRYNI+SQLEHLQSKY+GTGHADTTKFEWLVN HRDS ASYMGHY++LN F+I+ENE+
Sbjct: 1  MGDRYNIHSQLEHLQSKYIGTGHADTTKFEWLVNQHRDSSASYMGHYDLLNFFAISENES 60

Query: 61 KARVRFNFMERMLQPCGPPPEKPEE 85
          KARV+FN MERMLQPCGPPPEK E+
Sbjct: 61 KARVKFNLMERMLQPCGPPPEKSED 85

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380030462|ref|XP_003698867.1| PREDICTED: probable splicing factor 3B subunit 5-like [Apis florea] gi|383857060|ref|XP_003704024.1| PREDICTED: probable splicing factor 3B subunit 5-like [Megachile rotundata] gi|307209205|gb|EFN86312.1| Probable splicing factor 3B subunit 5 [Harpegnathos saltator] gi|332019894|gb|EGI60355.1| Putative splicing factor 3B subunit 5 [Acromyrmex echinatior]

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/85 (83%), Positives = 80/85 (94%)

Query: 1  MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
          MG+RYNI+SQLEHLQSKY+GTGHADTTKFEWLVN HRDS +SYMGHY++LN F+I ENEA
Sbjct: 1  MGERYNIHSQLEHLQSKYIGTGHADTTKFEWLVNQHRDSCSSYMGHYDLLNFFAIAENEA 60

Query: 61 KARVRFNFMERMLQPCGPPPEKPEE 85
          KARVRFN ME+MLQPCGPPPEKPE+
Sbjct: 61 KARVRFNLMEKMLQPCGPPPEKPED 85

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175620|gb|EFN65529.1| Probable splicing factor 3B subunit 5 [Camponotus floridanus]

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/85 (82%), Positives = 80/85 (94%)

Query: 1  MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
          MG+RYNI+SQLEHLQSKY+GTGHADTTKFEWLVN HRDS +S+MGHY++LN F+I ENEA
Sbjct: 1  MGERYNIHSQLEHLQSKYIGTGHADTTKFEWLVNQHRDSCSSFMGHYDLLNFFAIAENEA 60

Query: 61 KARVRFNFMERMLQPCGPPPEKPEE 85
          KARVRFN ME+MLQPCGPPPEKPE+
Sbjct: 61 KARVRFNLMEKMLQPCGPPPEKPED 85

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195038075|ref|XP_001990486.1| GH18222 [Drosophila grimshawi] gi|195111540|ref|XP_002000336.1| GI10176 [Drosophila mojavensis] gi|195395362|ref|XP_002056305.1| GJ10878 [Drosophila virilis] gi|193894682|gb|EDV93548.1| GH18222 [Drosophila grimshawi] gi|193916930|gb|EDW15797.1| GI10176 [Drosophila mojavensis] gi|194143014|gb|EDW59417.1| GJ10878 [Drosophila virilis]

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 71/85 (83%), Positives = 78/85 (91%)

Query: 1  MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
          MG+RYNI+SQLEHLQSKY+GTGHADTTKFEWL N HRDS ASYMGHY+MLN F+I ENE+
Sbjct: 1  MGERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDMLNYFAIAENES 60

Query: 61 KARVRFNFMERMLQPCGPPPEKPEE 85
          KARVRFN MERMLQPCGPPPEK E+
Sbjct: 61 KARVRFNLMERMLQPCGPPPEKLED 85

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241833905|ref|XP_002414957.1| pre-mRNA splicing factor SF3B 10 kDa subunit, putative [Ixodes scapularis] gi|215509169|gb|EEC18622.1| pre-mRNA splicing factor SF3B 10 kDa subunit, putative [Ixodes scapularis]

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/85 (80%), Positives = 79/85 (92%)

Query: 1   MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
           MGDRYNI+SQLEHLQSKY+GTGHADT ++EWLVN HRDSYASYMGH+++LN F++ ENEA
Sbjct: 54  MGDRYNIHSQLEHLQSKYIGTGHADTGRYEWLVNQHRDSYASYMGHFDILNFFAVCENEA 113

Query: 61  KARVRFNFMERMLQPCGPPPEKPEE 85
           KARVRFN ME+MLQPCGPPPEK E+
Sbjct: 114 KARVRFNLMEKMLQPCGPPPEKAED 138

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442761693|gb|JAA73005.1| Putative pre-mrna splicing factor sf3b 10 kda subunit, partial [Ixodes ricinus]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/85 (80%), Positives = 79/85 (92%)

Query: 1  MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
          MGDRYNI+SQLEHLQSKY+GTGHADT ++EWLVN HRDSYASYMGH+++LN F++ ENEA
Sbjct: 8  MGDRYNIHSQLEHLQSKYIGTGHADTGRYEWLVNQHRDSYASYMGHFDILNFFAVCENEA 67

Query: 61 KARVRFNFMERMLQPCGPPPEKPEE 85
          KARVRFN ME+MLQPCGPPPEK E+
Sbjct: 68 KARVRFNLMEKMLQPCGPPPEKAED 92

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|68051667|gb|AAY85097.1| IP03424p [Drosophila melanogaster]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/85 (82%), Positives = 78/85 (91%)

Query: 1  MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
          MG+RYNI+SQLEHLQSKY+GTGHADTTKFEWL N HRDS ASYMGHY++LN F+I ENE+
Sbjct: 6  MGERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENES 65

Query: 61 KARVRFNFMERMLQPCGPPPEKPEE 85
          KARVRFN MERMLQPCGPPPEK E+
Sbjct: 66 KARVRFNLMERMLQPCGPPPEKLED 90

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24645240|ref|NP_652189.1| CG11985 [Drosophila melanogaster] gi|194903481|ref|XP_001980876.1| GG17400 [Drosophila erecta] gi|195330524|ref|XP_002031953.1| GM26290 [Drosophila sechellia] gi|195499302|ref|XP_002096891.1| GE24804 [Drosophila yakuba] gi|195572393|ref|XP_002104180.1| GD20826 [Drosophila simulans] gi|20140916|sp|Q9VHI4.1|SF3B5_DROME RecName: Full=Probable splicing factor 3B subunit 5; Short=SF3b5; AltName: Full=Pre-mRNA-splicing factor SF3b 10 kDa subunit gi|7299128|gb|AAF54327.1| CG11985 [Drosophila melanogaster] gi|190652579|gb|EDV49834.1| GG17400 [Drosophila erecta] gi|194120896|gb|EDW42939.1| GM26290 [Drosophila sechellia] gi|194182992|gb|EDW96603.1| GE24804 [Drosophila yakuba] gi|194200107|gb|EDX13683.1| GD20826 [Drosophila simulans] gi|220951270|gb|ACL88178.1| CG11985-PA [synthetic construct] gi|220959976|gb|ACL92531.1| CG11985-PA [synthetic construct]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/85 (82%), Positives = 78/85 (91%)

Query: 1  MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
          MG+RYNI+SQLEHLQSKY+GTGHADTTKFEWL N HRDS ASYMGHY++LN F+I ENE+
Sbjct: 1  MGERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENES 60

Query: 61 KARVRFNFMERMLQPCGPPPEKPEE 85
          KARVRFN MERMLQPCGPPPEK E+
Sbjct: 61 KARVRFNLMERMLQPCGPPPEKLED 85

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|226470382|emb|CAX70471.1| putative splicing factor 3B subunit 5 [Schistosoma japonicum] gi|226470384|emb|CAX70472.1| putative splicing factor 3B subunit 5 [Schistosoma japonicum] gi|226485713|emb|CAX75276.1| putative splicing factor 3B subunit 5 [Schistosoma japonicum] gi|226485715|emb|CAX75277.1| putative splicing factor 3B subunit 5 [Schistosoma japonicum]

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/84 (79%), Positives = 78/84 (92%)

Query: 1  MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
          MGDRYNI++QLEHLQSKYVGTGHADTTK+EWL N HRDS ASY+GH++MLNLF++ ENE 
Sbjct: 1  MGDRYNIHTQLEHLQSKYVGTGHADTTKWEWLTNQHRDSCASYLGHFDMLNLFAVCENEC 60

Query: 61 KARVRFNFMERMLQPCGPPPEKPE 84
          KARVRFN +E+MLQPCGPPPE+PE
Sbjct: 61 KARVRFNLLEKMLQPCGPPPERPE 84

Source: Schistosoma japonicum

Species: Schistosoma japonicum

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
FB|FBgn0040534	85	CG11985 [Drosophila melanogast	1.0	1.0	0.823	2.7e-36
UNIPROTKB|Q56K13	86	SF3B5 "Splicing factor 3B subu	1.0	0.988	0.788	4e-35
UNIPROTKB|Q9BWJ5	86	SF3B5 "Splicing factor 3B subu	1.0	0.988	0.788	4e-35
UNIPROTKB|E1C5A2	86	SF3B5 "Uncharacterized protein	1.0	0.988	0.776	8.3e-35
MGI|MGI:1913375	86	Sf3b5 "splicing factor 3b, sub	1.0	0.988	0.776	4.6e-34
RGD|1586993	86	Sf3b5 "splicing factor 3b, sub	1.0	0.988	0.776	4.6e-34
TAIR|locus:1005716320	87	AT4G14342 "AT4G14342" [Arabido	0.976	0.954	0.698	4.4e-29
TAIR|locus:505006364	87	AT3G23325 "AT3G23325" [Arabido	0.976	0.954	0.686	9.1e-29
DICTYBASE|DDB_G0271312	94	sf3b5 "splicing factor 3B subu	0.952	0.861	0.580	3.8e-23
POMBASE|SPBC211.05	85	sab10 "splicing factor 3B (pre	0.941	0.941	0.475	2.5e-17

FB|FBgn0040534 CG11985 [Drosophila melanogaster (taxid:7227)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 70/85 (82%), Positives = 78/85 (91%)

Query:     1 MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
             MG+RYNI+SQLEHLQSKY+GTGHADTTKFEWL N HRDS ASYMGHY++LN F+I ENE+
Sbjct:     1 MGERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENES 60

Query:    61 KARVRFNFMERMLQPCGPPPEKPEE 85
             KARVRFN MERMLQPCGPPPEK E+
Sbjct:    61 KARVRFNLMERMLQPCGPPPEKLED 85

GO:0005634 "nucleus" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0005686 "U2 snRNP" evidence=IDA

UNIPROTKB|Q56K13 SF3B5 "Splicing factor 3B subunit 5" [Bos taurus (taxid:9913)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 67/85 (78%), Positives = 77/85 (90%)

Query:     1 MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
             M DRY I+SQLEHLQSKY+GTGHADTTK+EWLVN HRDSY SYMGH+++LN F+I ENE+
Sbjct:     1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60

Query:    61 KARVRFNFMERMLQPCGPPPEKPEE 85
             KARVRFN ME+MLQPCGPP +KPEE
Sbjct:    61 KARVRFNLMEKMLQPCGPPADKPEE 85

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|Q9BWJ5 SF3B5 "Splicing factor 3B subunit 5" [Homo sapiens (taxid:9606)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 67/85 (78%), Positives = 77/85 (90%)

Query:     1 MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
             M DRY I+SQLEHLQSKY+GTGHADTTK+EWLVN HRDSY SYMGH+++LN F+I ENE+
Sbjct:     1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60

Query:    61 KARVRFNFMERMLQPCGPPPEKPEE 85
             KARVRFN ME+MLQPCGPP +KPEE
Sbjct:    61 KARVRFNLMEKMLQPCGPPADKPEE 85

GO:0005689 "U12-type spliceosomal complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|E1C5A2 SF3B5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 66/85 (77%), Positives = 77/85 (90%)

Query:     1 MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
             M DRY I+SQLEHLQSKY+GTGHADTTK+EWLVN HRDSY SYMGH+++LN F+I ENE+
Sbjct:     1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60

Query:    61 KARVRFNFMERMLQPCGPPPEKPEE 85
             KARVRFN ME+MLQPCGPP +KP+E
Sbjct:    61 KARVRFNLMEKMLQPCGPPADKPDE 85

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

MGI|MGI:1913375 Sf3b5 "splicing factor 3b, subunit 5" [Mus musculus (taxid:10090)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 66/85 (77%), Positives = 76/85 (89%)

Query:     1 MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
             M DRY I+SQLEHLQSKY+GTGHADTTK+EWLVN HRDSY SYMGH+++LN F+I ENE+
Sbjct:     1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60

Query:    61 KARVRFNFMERMLQPCGPPPEKPEE 85
             KARVRFN ME+MLQP GPP +KPEE
Sbjct:    61 KARVRFNLMEKMLQPSGPPADKPEE 85

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

RGD|1586993 Sf3b5 "splicing factor 3b, subunit 5" [Rattus norvegicus (taxid:10116)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 66/85 (77%), Positives = 76/85 (89%)

Query:     1 MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
             M DRY I+SQLEHLQSKY+GTGHADTTK+EWLVN HRDSY SYMGH+++LN F+I ENE+
Sbjct:     1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60

Query:    61 KARVRFNFMERMLQPCGPPPEKPEE 85
             KARVRFN ME+MLQP GPP +KPEE
Sbjct:    61 KARVRFNLMEKMLQPSGPPADKPEE 85

GO:0005634 "nucleus" evidence=ISO

GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO

TAIR|locus:1005716320 AT4G14342 "AT4G14342" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 58/83 (69%), Positives = 70/83 (84%)

Query:     3 DRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKA 62
             DR+NI SQLEHLQ+KYVGTGHAD ++FEW VNI RDSYASY+GHY ML+ F+I ENE+  
Sbjct:     5 DRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIG 64

Query:    63 RVRFNFMERMLQPCGPPPEKPEE 85
             R R+NFM++ML PCG PPE+ EE
Sbjct:    65 RERYNFMQKMLLPCGLPPEREEE 87

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:505006364 AT3G23325 "AT3G23325" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 57/83 (68%), Positives = 70/83 (84%)

Query:     3 DRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKA 62
             DR+NI SQLEHLQ+KYVGTGHAD ++FEW VNI RDSYASY+GHY ML+ F+I ENE+  
Sbjct:     5 DRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIG 64

Query:    63 RVRFNFMERMLQPCGPPPEKPEE 85
             R R+NFM++ML PCG PPE+ +E
Sbjct:    65 RERYNFMQKMLLPCGLPPEREDE 87

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006397 "mRNA processing" evidence=ISS

DICTYBASE|DDB_G0271312 sf3b5 "splicing factor 3B subunit 10 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 47/81 (58%), Positives = 63/81 (77%)

Query:     1 MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
             M +R ++ SQLEHLQ +YVGTGHAD +K EWL N HRDS +S++GH + L+LFSI ENE+
Sbjct:     1 MSERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENES 60

Query:    61 KARVRFNFMERMLQPCGPPPE 81
               RVR+N + +M+ PCGP P+
Sbjct:    61 VGRVRYNTLTKMISPCGPAPK 81

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005686 "U2 snRNP" evidence=ISS

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPBC211.05 sab10 "splicing factor 3B (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 38/80 (47%), Positives = 55/80 (68%)

Query:     1 MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEA 60
             M DR    ++LE LQ++YVG G+A TTK+EW+VN HRD+ +S +GH  +L   +    E 
Sbjct:     1 MADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEP 60

Query:    61 KARVRFNFMERMLQPCGPPP 80
             + +VR N +E+M+ PCGPPP
Sbjct:    61 RVQVRKNLLEKMIMPCGPPP 80


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       85        85   0.00091  102 3  11 22  0.46    29
                                                     29  0.46    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  564 (60 KB)
  Total size of DFA:  120 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.75u 0.07s 10.82t   Elapsed:  00:00:06
  Total cpu time:  10.75u 0.07s 10.82t   Elapsed:  00:00:06
  Start:  Thu Aug 15 16:05:58 2013   End:  Thu Aug 15 16:06:04 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LW64	SF3BA_ARATH	No assigned EC number	0.6867	0.9764	0.9540	yes	N/A
Q923D4	SF3B5_MOUSE	No assigned EC number	0.7764	1.0	0.9883	yes	N/A
P58728	SF3BB_ARATH	No assigned EC number	0.6987	0.9764	0.9540	yes	N/A
Q56K13	SF3B5_BOVIN	No assigned EC number	0.7882	1.0	0.9883	yes	N/A
Q9VHI4	SF3B5_DROME	No assigned EC number	0.8235	1.0	1.0	yes	N/A
Q9BWJ5	SF3B5_HUMAN	No assigned EC number	0.7882	1.0	0.9883	yes	N/A
Q55BF5	SF3B5_DICDI	No assigned EC number	0.5802	0.9529	0.8617	yes	N/A
Q9P7R6	YHV5_SCHPO	No assigned EC number	0.475	0.9411	0.9411	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	85
pfam07189	79	pfam07189, SF3b10, Splicing factor 3B subunit 10 (	1e-47

>gnl|CDD|148662 pfam07189, SF3b10, Splicing factor 3B subunit 10 (SF3b10)

 Score =  145 bits (369), Expect = 1e-47
 Identities = 57/79 (72%), Positives = 67/79 (84%)

Query: 3  DRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKA 62
          DR  I  QLEHLQSKY+GTGHADTTK+EWL NIHRD+YASY+GH + L  F+I ENE KA
Sbjct: 1  DRLRIQQQLEHLQSKYIGTGHADTTKWEWLTNIHRDTYASYIGHPSRLAYFAIAENEPKA 60

Query: 63 RVRFNFMERMLQPCGPPPE 81
          RVR+N +E+MLQPCGPPP+
Sbjct: 61 RVRYNMLEKMLQPCGPPPK 79

This family consists of several eukaryotic splicing factor 3B subunit 10 (SF3b10) proteins. SF3b10 is a 10 kDa subunit of the splicing factor SF3b. SF3b associates with the splicing factor SF3a and a 12S RNA unit to form the U2 small nuclear ribonucleoproteins complex. SF3b10 and SF3b14b are also thought to facilitate the interaction of U2 with the branch site. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	85
PF07189	79	SF3b10: Splicing factor 3B subunit 10 (SF3b10); In	100.0
KOG3485|consensus	86		100.0
PF10022	361	DUF2264: Uncharacterized protein conserved in bact	82.55

>PF07189 SF3b10: Splicing factor 3B subunit 10 (SF3b10); InterPro: IPR009846 This family consists of several eukaryotic splicing factor 3B subunit 5 (SF3b5) proteins

Probab=100.00  E-value=1.1e-56  Score=294.07  Aligned_cols=79  Identities=72%  Similarity=1.230  Sum_probs=78.4

Q ss_pred             hhhhhHHHHHHHHhhccCCCCCCCchHHHHHHhhhHHHHhhhCChhHHHHHHHhcCchHHHHHHHHHHHhhCCCCCCCC
Q psy9638           3 DRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFMERMLQPCGPPPE   81 (85)
Q Consensus         3 dr~~~~~Qle~Lq~KY~GtG~~dtTk~EW~tn~hRDT~aS~~gH~~lL~Y~aia~nes~~r~r~~llekM~~pcgppp~   81 (85)
                      ||+++++||||||+||+||||+||||+||++||||||||||+||++||+|||||+|+|++|+|++||+||+|||||||+
T Consensus         1 Dk~~~~~qle~Lq~KY~GtG~~dTTk~EW~tnihRDT~aS~~gH~~lL~Y~aia~ne~~~r~r~~ll~kM~~p~g~pp~   79 (79)
T PF07189_consen    1 DKYRIQQQLEHLQSKYVGTGHADTTKEEWLTNIHRDTYASIIGHPDLLEYFAIAENESKARVRFNLLEKMVQPCGPPPP   79 (79)
T ss_pred             ChhhHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCCCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999999996

SF3b5 is a 10 kDa subunit of the splicing factor SF3b. SF3b associates with the splicing factor SF3a and a 12S RNA unit to form the U2 small nuclear ribonucleoproteins complex. SF3b5 and SF3b14b are also thought to facilitate the interaction of U2 with the branch site []. Also included in this entry is RDS3 complex subunit 10, another protein involved in mRNA splicing [].

>KOG3485|consensus

Probab=100.00  E-value=9.1e-52  Score=273.74  Aligned_cols=84  Identities=81%  Similarity=1.336  Sum_probs=80.7

Q ss_pred             CchhhhhHHHHHHHHhhccCCCCCCCchHHHHHHhhhHHHHhhhCChhHHHHHHHhcCchHHHHHHHHHHHhhCCCCC-C
Q psy9638           1 MGDRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKARVRFNFMERMLQPCGP-P   79 (85)
Q Consensus         1 M~dr~~~~~Qle~Lq~KY~GtG~~dtTk~EW~tn~hRDT~aS~~gH~~lL~Y~aia~nes~~r~r~~llekM~~pcgp-p   79 (85)
                      |+|||++++||||||+||+||||+||||+||++||||||++|+|||+++|.||+||||||++|+|+|+|+||++|||| |
T Consensus         1 ~~dRf~i~aqLEhLQskYvGtg~a~~tk~ew~vnq~RdS~~S~vgh~~~l~Y~a~ae~Ep~~rvr~N~lekml~pcg~wp   80 (86)
T KOG3485|consen    1 MGDRFNIHAQLEHLQSKYVGTGHADTTKFEWLVNQHRDSLASYVGHYPLLNYFAIAENEPKARVRFNLLEKMLQPCGPWP   80 (86)
T ss_pred             CcchhhHHHHHHHHHHHhhcccccccchHHHHHhcchhhhhhhcCCchHHHHHHHhccCchhhhhhcHHHHhhcccCCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999999999 5


Q ss_pred             CCCCC
Q psy9638          80 PEKPE   84 (85)
Q Consensus        80 p~~~~   84 (85)
                      |.+++
T Consensus        81 p~~e~   85 (86)
T KOG3485|consen   81 PEKEE   85 (86)
T ss_pred             Ccccc
Confidence            55544

>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=82.55  E-value=3.9  Score=32.92  Aligned_cols=74  Identities=28%  Similarity=0.385  Sum_probs=56.8

Q ss_pred             hhhhhHHHHHHHHhhccCCCCCCCchHHHHHHhhhHHHHhhhCChhHHHHHHHhcCchHH---HHHH------HHHHHhh
Q psy9638           3 DRYNIYSQLEHLQSKYVGTGHADTTKFEWLVNIHRDSYASYMGHYNMLNLFSINENEAKA---RVRF------NFMERML   73 (85)
Q Consensus         3 dr~~~~~Qle~Lq~KY~GtG~~dtTk~EW~tn~hRDT~aS~~gH~~lL~Y~aia~nes~~---r~r~------~llekM~   73 (85)
                      |..++..-++.+.+=|+|=|=-.-..     +-|.|=|+|.+-|+-+|-|..++....+.   +.|.      +-.++|+
T Consensus       173 d~~~i~~~l~~~e~~Y~GdGWY~DG~-----~~~~DYYns~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f  247 (361)
T PF10022_consen  173 DEERIDYDLERIEEWYLGDGWYSDGP-----EFQFDYYNSWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERMF  247 (361)
T ss_pred             cHHHHHHHHHHHHHHhccCCccccCC-----ccCCcchHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHc
Confidence            55677888999999999998653332     66999999999999999999999877532   3332      2357899


Q ss_pred             CCCCCCCC
Q psy9638          74 QPCGPPPE   81 (85)
Q Consensus        74 ~pcgppp~   81 (85)
                      .|.|-+|+
T Consensus       248 ~~dG~~~~  255 (361)
T PF10022_consen  248 SPDGAAPP  255 (361)
T ss_pred             CCCCCcCC
Confidence            99996654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00