Psyllid ID: psy963

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MAEEVLQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIATLPKKK
Secondary Structure (PSIPRED)
ccccccEEEEEEccccHHHHHHHccccccccccccccccccEEEEcccccHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHcccEEEEEEccccEEEEEEccccccccccccccccccEEEEcccccHHHHHHHHHHHHccccHEEEEEcHHHHHHHHHHHHHHHHccccccEEEEEccccccccccHHHHHHHHHHHcccHccc
Coil and Loop (DISEMBL)
MAEEVLQLVGLIGDEDSVVGFLLggighqtitpplqtvtsnvfvvdketpadeIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIrersnqvypIVLEIpsaldafhytitdedkqcrniatlpkkk
Flexible Loop (DISEMBL)
MAEEVLQLVGLIGDEDSVVGFLLGGIGHqtitpplqtvTSNVFVVDKETPADEIEDafrtlvrrtdvgivlitrlvadrirhtldirersnqvypIVLEIPSALDAFHYTITdedkqcrniatlpkkk
Low Complexity Region (SEG)
MAEEVLQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIATLPKKK
Disordered region (IsUnstruct)
****VLQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFHYTITDEDKQC**********
Disordered Region (DISOPRED)
******Q***LIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIAT*****
Disordered Region (DISEMBL)
MAEEVLQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIATLPKKK
Disordered Region (DISPRO)
****VLQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIATL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEEVLQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIATLPKKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
P50408	119	V-type proton ATPase subu	yes	N/A	0.687	0.739	0.479	2e-17
Q9D1K2	119	V-type proton ATPase subu	yes	N/A	0.687	0.739	0.479	2e-17
Q28029	119	V-type proton ATPase subu	yes	N/A	0.687	0.739	0.479	2e-17
Q16864	119	V-type proton ATPase subu	yes	N/A	0.687	0.739	0.468	8e-17
Q9Y756	124	V-type proton ATPase subu	N/A	N/A	0.703	0.725	0.505	7e-16
P31478	124	V-type proton ATPase subu	N/A	N/A	0.687	0.709	0.458	4e-15
Q9I8H3	110	V-type proton ATPase subu	N/A	N/A	0.656	0.763	0.478	4e-15
Q55AH5	120	V-type proton ATPase subu	yes	N/A	0.679	0.725	0.442	5e-15
O44091	124	V-type proton ATPase subu	no	N/A	0.687	0.709	0.437	7e-15
A6RRW0	124	V-type proton ATPase subu	N/A	N/A	0.703	0.725	0.474	8e-15

>sp|P50408|VATF_RAT V-type proton ATPase subunit F OS=Rattus norvegicus GN=Atp6v1f PE=1 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 8/96 (8%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
           +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct: 6   KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           +GI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct: 61  IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Rattus norvegicus (taxid: 10116)

>sp|Q9D1K2|VATF_MOUSE V-type proton ATPase subunit F OS=Mus musculus GN=Atp6v1f PE=1 SV=2

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 8/96 (8%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
           +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct: 6   KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           +GI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct: 61  IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

>sp|Q28029|VATF_BOVIN V-type proton ATPase subunit F OS=Bos taurus GN=ATP6V1F PE=3 SV=2

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 8/96 (8%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
           +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct: 6   KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           +GI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct: 61  IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Bos taurus (taxid: 9913)

>sp|Q16864|VATF_HUMAN V-type proton ATPase subunit F OS=Homo sapiens GN=ATP6V1F PE=1 SV=2

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 8/96 (8%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
           +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct: 6   KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           +GI+LI + +A+ +RH LD  ++S    P VLEIPS
Sbjct: 61  IGIILINQYIAEMVRHALDAHQQS---IPAVLEIPS 93

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Homo sapiens (taxid: 9606)

>sp|Q9Y756|VATF_NEUCR V-type proton ATPase subunit F OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=vma-7 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 57/97 (58%), Gaps = 7/97 (7%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAF-RTLVRRT 65
           Q + +IGDEDSV G LL GIGH T  P  Q    N  VVD +T    IE AF R    R 
Sbjct: 12  QFLAVIGDEDSVTGLLLAGIGHVTAPPDSQ---KNFLVVDNKTDNAAIEAAFDRFTTERK 68

Query: 66  DVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           D+GIVLI + +ADRIRH +D        +P VLEIPS
Sbjct: 69  DIGIVLINQHIADRIRHRVDTH---TAAFPTVLEIPS 102

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|P31478|VATF_MANSE V-type proton ATPase subunit F OS=Manduca sexta GN=VHA14 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 58/96 (60%), Gaps = 8/96 (8%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
           +L+ +IGDED+ VGFLLGGIG        +    N  VVDK TP  EIE+ F+  V+R D
Sbjct: 10  KLISVIGDEDTCVGFLLGGIGEIN-----KNRHPNFMVVDKNTPVSEIEECFKRFVKRDD 64

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           + I+LI + VA+ +RH +D         P VLEIPS
Sbjct: 65  IDIILINQNVAELVRHVIDAHTAP---VPSVLEIPS 97

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. V-ATPase is responsible for energizing electrophoretic potassium/proton antiport (1 potassium ion is exchanged for 2 protons) by generating a transmembrane voltage of more than 200mV.

Manduca sexta (taxid: 7130)

>sp|Q9I8H3|VATF_XENLA V-type proton ATPase subunit F (Fragment) OS=Xenopus laevis GN=atp6s14 PE=3 SV=1

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 57/92 (61%), Gaps = 8/92 (8%)

Query: 11  LIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIV 70
           +IGDED+V GFLLGGIG        +    N  VV+KET   EIE+ FR+ + R D+GI+
Sbjct: 1   VIGDEDTVTGFLLGGIGELN-----KNRKPNFLVVEKETSVTEIEETFRSFLNRDDIGII 55

Query: 71  LITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           LI + +A+ IRH +D    S    P VLEIPS
Sbjct: 56  LINQFIAEMIRHVIDTHTIS---IPAVLEIPS 84

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Xenopus laevis (taxid: 8355)

>sp|Q55AH5|VATF_DICDI V-type proton ATPase subunit F OS=Dictyostelium discoideum GN=vatF PE=3 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 8/95 (8%)

Query: 8   LVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDV 67
           LV +IGDED V GFLL G+G +      +    N  VVD +T   +IE AF++   R D+
Sbjct: 11  LVAVIGDEDVVTGFLLAGVGQKD-----KKKNENFLVVDSKTSQAKIETAFKSFTTRNDI 65

Query: 68  GIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
            I++IT+ VAD IR+ +D     +QV P +LEIPS
Sbjct: 66  AIIMITQKVADEIRYLID---EYHQVIPTILEIPS 97

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Dictyostelium discoideum (taxid: 44689)

>sp|O44091|VATF1_DROPS V-type proton ATPase subunit F 1 OS=Drosophila pseudoobscura pseudoobscura GN=Vha14 PE=2 SV=2

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 8/96 (8%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
           +L+ +IGDED+ VGFLLGG+G        +    N  VVDK TP  E+ED F+  ++R D
Sbjct: 10  KLISVIGDEDTCVGFLLGGVGEIN-----KNRHPNFMVVDKNTPVSELEDCFKRFLKRDD 64

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           + I+LI +  A+ IRH +D         P VLEIPS
Sbjct: 65  IDIILINQNCAELIRHVIDAH---TSPVPAVLEIPS 97

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|A6RRW0|VATF_BOTFB V-type proton ATPase subunit F OS=Botryotinia fuckeliana (strain B05.10) GN=vma7 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 58/97 (59%), Gaps = 7/97 (7%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAF-RTLVRRT 65
           Q + +IGDEDSV G LL GIGH T  P  Q    N  VVD +T    IE+AF R    R 
Sbjct: 12  QFLAVIGDEDSVTGLLLAGIGHVTSPPDSQ---KNFLVVDNKTDNAAIEEAFERFTTERK 68

Query: 66  DVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           D+GI+LI + +A+RIRH +D        +P +LEIPS
Sbjct: 69  DIGILLINQHIAERIRHRVDT---YTAAFPALLEIPS 102

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Botryotinia fuckeliana (strain B05.10) (taxid: 332648)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
354470681	119	PREDICTED: V-type proton ATPase subunit	0.687	0.739	0.479	1e-15
311275455	119	PREDICTED: V-type proton ATPase subunit	0.687	0.739	0.479	1e-15
395833570	119	PREDICTED: V-type proton ATPase subunit	0.687	0.739	0.489	1e-15
432091255	119	V-type proton ATPase subunit F [Myotis d	0.687	0.739	0.479	1e-15
301755262	119	PREDICTED: v-type proton ATPase subunit	0.687	0.739	0.479	1e-15
16758754	119	V-type proton ATPase subunit F [Rattus n	0.687	0.739	0.479	2e-15
195453096	144	GK13026 [Drosophila willistoni] gi|19416	0.726	0.645	0.455	2e-15
114326212	119	V-type proton ATPase subunit F [Bos taur	0.687	0.739	0.479	2e-15
57095928	119	PREDICTED: V-type proton ATPase subunit	0.687	0.739	0.479	2e-15
149411709	119	PREDICTED: V-type proton ATPase subunit	0.687	0.739	0.479	3e-15

>gi|354470681|ref|XP_003497573.1| PREDICTED: V-type proton ATPase subunit F-like [Cricetulus griseus] gi|344242074|gb|EGV98177.1| V-type proton ATPase subunit F [Cricetulus griseus]

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 8/96 (8%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
           +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct: 6   KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTVNEIEDTFRQFLNRDD 60

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           +GI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct: 61  IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|311275455|ref|XP_003134746.1| PREDICTED: V-type proton ATPase subunit F-like [Sus scrofa]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 8/96 (8%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
           +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct: 6   KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRED 60

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           +GI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct: 61  IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395833570|ref|XP_003789799.1| PREDICTED: V-type proton ATPase subunit F [Otolemur garnettii]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 62/96 (64%), Gaps = 8/96 (8%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
           +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct: 6   KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           VGI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct: 61  VGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432091255|gb|ELK24459.1| V-type proton ATPase subunit F [Myotis davidii]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 8/96 (8%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
           +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct: 6   KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTVNEIEDTFRQFLNRDD 60

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           +GI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct: 61  IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301755262|ref|XP_002913476.1| PREDICTED: v-type proton ATPase subunit F-like [Ailuropoda melanoleuca] gi|281348815|gb|EFB24399.1| hypothetical protein PANDA_001286 [Ailuropoda melanoleuca] gi|378747670|gb|AFC36446.1| ATP6V1F [Ailuropoda melanoleuca] gi|378747672|gb|AFC36447.1| ATP6V1F [Ailuropoda melanoleuca]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 8/96 (8%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
           +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct: 6   KLIAVIGDEDTVTGFLLGGIGELN-----KNRQPNFLVVEKDTTINEIEDTFRQFLNRDD 60

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           +GI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct: 61  IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|16758754|ref|NP_446336.1| V-type proton ATPase subunit F [Rattus norvegicus] gi|21314824|ref|NP_079657.1| V-type proton ATPase subunit F [Mus musculus] gi|344270965|ref|XP_003407312.1| PREDICTED: V-type proton ATPase subunit F-like [Loxodonta africana] gi|348578919|ref|XP_003475229.1| PREDICTED: V-type proton ATPase subunit F-like [Cavia porcellus] gi|1718093|sp|P50408.1|VATF_RAT RecName: Full=V-type proton ATPase subunit F; Short=V-ATPase subunit F; AltName: Full=V-ATPase 14 kDa subunit; AltName: Full=Vacuolar proton pump subunit F gi|47117625|sp|Q9D1K2.2|VATF_MOUSE RecName: Full=V-type proton ATPase subunit F; Short=V-ATPase subunit F; AltName: Full=V-ATPase 14 kDa subunit; AltName: Full=Vacuolar proton pump subunit F gi|1174078|gb|AAB03684.1| vacuolar ATPase subunit F [Rattus norvegicus] gi|12840803|dbj|BAB24962.1| unnamed protein product [Mus musculus] gi|16741472|gb|AAH16553.1| ATPase, H+ transporting, lysosomal V1 subunit F [Mus musculus] gi|74212492|dbj|BAE30988.1| unnamed protein product [Mus musculus] gi|74225348|dbj|BAE31604.1| unnamed protein product [Mus musculus] gi|74225396|dbj|BAE31622.1| unnamed protein product [Mus musculus] gi|148681828|gb|EDL13775.1| mCG9139, isoform CRA_b [Mus musculus] gi|149065148|gb|EDM15224.1| ATPase, H transporting, lysosomal V1 subunit F, isoform CRA_a [Rattus norvegicus] gi|431911722|gb|ELK13870.1| V-type proton ATPase subunit F [Pteropus alecto]

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 8/96 (8%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
           +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct: 6   KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           +GI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct: 61  IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195453096|ref|XP_002073636.1| GK13026 [Drosophila willistoni] gi|194169721|gb|EDW84622.1| GK13026 [Drosophila willistoni]

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 65/101 (64%), Gaps = 8/101 (7%)

Query: 2   AEEVLQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTL 61
           +E   +L+ +IGDED+ VGFLLGGIG        +++ SN  VV+++T A+EIE  F+  
Sbjct: 5   SESFDKLIAIIGDEDTCVGFLLGGIGEVN-----KSLESNFMVVERDTTAEEIEACFKRF 59

Query: 62  VRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           V R+D+GI+LI ++ AD IR T+D         P VLEIPS
Sbjct: 60  VSRSDIGIILINQIYADMIRKTIDAH---TMAIPTVLEIPS 97

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114326212|ref|NP_001039334.1| V-type proton ATPase subunit F [Bos taurus] gi|410952817|ref|XP_003983074.1| PREDICTED: V-type proton ATPase subunit F [Felis catus] gi|426227991|ref|XP_004008098.1| PREDICTED: V-type proton ATPase subunit F [Ovis aries] gi|124054077|sp|Q28029.2|VATF_BOVIN RecName: Full=V-type proton ATPase subunit F; Short=V-ATPase subunit F; AltName: Full=V-ATPase 14 kDa subunit; AltName: Full=Vacuolar proton pump subunit F gi|84202551|gb|AAI11687.1| ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F [Bos taurus] gi|296488295|tpg|DAA30408.1| TPA: V-type proton ATPase subunit F [Bos taurus] gi|417395907|gb|JAA44987.1| Putative vacuolar h+-atpase v1 sector subunit f [Desmodus rotundus] gi|440911255|gb|ELR60950.1| V-type proton ATPase subunit F [Bos grunniens mutus] gi|444726893|gb|ELW67408.1| V-type proton ATPase subunit F [Tupaia chinensis]

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 8/96 (8%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
           +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct: 6   KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           +GI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct: 61  IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|57095928|ref|XP_532431.1| PREDICTED: V-type proton ATPase subunit F [Canis lupus familiaris]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 8/96 (8%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
           +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct: 6   KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           +GI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct: 61  IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149411709|ref|XP_001510193.1| PREDICTED: V-type proton ATPase subunit F-like [Ornithorhynchus anatinus]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 61/96 (63%), Gaps = 8/96 (8%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
           +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct: 6   KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTSINEIEDTFRQFLNRDD 60

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           +GI+LI + +A+ +RH LD   RS    P VLEIPS
Sbjct: 61  IGIILINQYIAEMVRHALDAHTRS---LPAVLEIPS 93

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
UNIPROTKB|Q28029	119	ATP6V1F "V-type proton ATPase	0.687	0.739	0.479	1.6e-17
UNIPROTKB|E2RN91	119	ATP6V1F "V-type proton ATPase	0.687	0.739	0.479	1.6e-17
UNIPROTKB|F1SMN6	119	ATP6V1F "V-type proton ATPase	0.687	0.739	0.479	1.6e-17
MGI|MGI:1913394	119	Atp6v1f "ATPase, H+ transporti	0.687	0.739	0.479	1.6e-17
RGD|621552	119	Atp6v1f "ATPase, H transportin	0.687	0.739	0.479	1.6e-17
UNIPROTKB|Q16864	119	ATP6V1F "V-type proton ATPase	0.687	0.739	0.468	4.1e-17
UNIPROTKB|G3MZB6	111	G3MZB6 "Uncharacterized protei	0.687	0.792	0.468	1.1e-16
ZFIN|ZDB-GENE-040718-259	119	atp6v1f "ATPase, H+ transporti	0.687	0.739	0.447	6e-16
ASPGD|ASPL0000004609	124	AN5880 [Emericella nidulans (t	0.703	0.725	0.453	2.6e-15
DICTYBASE|DDB_G0271882	120	vatF "vacuolar ATPase subunit	0.679	0.725	0.442	1.4e-14

UNIPROTKB|Q28029 ATP6V1F "V-type proton ATPase subunit F" [Bos taurus (taxid:9913)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 46/96 (47%), Positives = 62/96 (64%)

Query:     7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
             +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct:     6 KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60

Query:    67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
             +GI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct:    61 IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

UNIPROTKB|E2RN91 ATP6V1F "V-type proton ATPase subunit F" [Canis lupus familiaris (taxid:9615)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 46/96 (47%), Positives = 62/96 (64%)

Query:     7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
             +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct:     6 KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60

Query:    67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
             +GI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct:    61 IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

UNIPROTKB|F1SMN6 ATP6V1F "V-type proton ATPase subunit F" [Sus scrofa (taxid:9823)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 46/96 (47%), Positives = 62/96 (64%)

Query:     7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
             +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct:     6 KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRED 60

Query:    67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
             +GI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct:    61 IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

MGI|MGI:1913394 Atp6v1f "ATPase, H+ transporting, lysosomal V1 subunit F" [Mus musculus (taxid:10090)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 46/96 (47%), Positives = 62/96 (64%)

Query:     7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
             +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct:     6 KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60

Query:    67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
             +GI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct:    61 IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=ISO

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0042625 "ATPase activity, coupled to transmembrane movement of ions" evidence=ISO

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

RGD|621552 Atp6v1f "ATPase, H transporting, lysosomal V1 subunit F" [Rattus norvegicus (taxid:10116)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 46/96 (47%), Positives = 62/96 (64%)

Query:     7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
             +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct:     6 KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60

Query:    67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
             +GI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct:    61 IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=ISO

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0042625 "ATPase activity, coupled to transmembrane movement of ions" evidence=IDA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

UNIPROTKB|Q16864 ATP6V1F "V-type proton ATPase subunit F" [Homo sapiens (taxid:9606)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 45/96 (46%), Positives = 62/96 (64%)

Query:     7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
             +L+ +IGDED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct:     6 KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60

Query:    67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
             +GI+LI + +A+ +RH LD  ++S    P VLEIPS
Sbjct:    61 IGIILINQYIAEMVRHALDAHQQS---IPAVLEIPS 93

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IDA

GO:0015992 "proton transport" evidence=NAS

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=NAS

GO:0016469 "proton-transporting two-sector ATPase complex" evidence=NAS

GO:0042624 "ATPase activity, uncoupled" evidence=NAS

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

UNIPROTKB|G3MZB6 G3MZB6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 45/96 (46%), Positives = 61/96 (63%)

Query:     7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
             +L+ +I DED+V GFLLGGIG        +    N  VV+K+T  +EIED FR  + R D
Sbjct:     6 KLIAVIRDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60

Query:    67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
             +GI+LI + +A+ +RH LD  +RS    P VLEIPS
Sbjct:    61 IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

ZFIN|ZDB-GENE-040718-259 atp6v1f "ATPase, H+ transporting, V1 subunit F" [Danio rerio (taxid:7955)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 43/96 (44%), Positives = 60/96 (62%)

Query:     7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
             +L+ +IGDED+  GFLLGGIG        +    N  VV+KET   EIE+ F++ + R D
Sbjct:     6 KLIAVIGDEDTCTGFLLGGIGELN-----KNRKPNFLVVEKETSVTEIEETFKSFLARND 60

Query:    67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
             +GI+LI + +A+ IRH +D   +S    P VLEIPS
Sbjct:    61 IGIILINQFIAEMIRHAIDAHMQS---IPAVLEIPS 93

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0015992 "proton transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

ASPGD|ASPL0000004609 AN5880 [Emericella nidulans (taxid:162425)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 44/97 (45%), Positives = 60/97 (61%)

Query:     7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVR-RT 65
             Q + +IGDEDSV G LL GIGH T  P  Q    N  VVD +T    IE+AF+   + R 
Sbjct:    12 QFLAVIGDEDSVTGLLLAGIGHVTGPPDSQR---NFLVVDAKTENSTIENAFQNFTQERN 68

Query:    66 DVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
             D+ ++LI + +A+RIRH +D     ++ +P VLEIPS
Sbjct:    69 DIAVLLINQHIAERIRHVID---SYSEAFPAVLEIPS 102

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

DICTYBASE|DDB_G0271882 vatF "vacuolar ATPase subunit F" [Dictyostelium discoideum (taxid:44689)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 42/95 (44%), Positives = 58/95 (61%)

Query:     8 LVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDV 67
             LV +IGDED V GFLL G+G +      +    N  VVD +T   +IE AF++   R D+
Sbjct:    11 LVAVIGDEDVVTGFLLAGVGQKD-----KKKNENFLVVDSKTSQAKIETAFKSFTTRNDI 65

Query:    68 GIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
              I++IT+ VAD IR+ +D     +QV P +LEIPS
Sbjct:    66 AIIMITQKVADEIRYLID---EYHQVIPTILEIPS 97

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P39111	VATF_YEAST	No assigned EC number	0.3942	0.7343	0.7966	yes	N/A
Q55AH5	VATF_DICDI	No assigned EC number	0.4421	0.6796	0.725	yes	N/A
Q9D1K2	VATF_MOUSE	No assigned EC number	0.4791	0.6875	0.7394	yes	N/A
Q23680	VATF_CAEEL	No assigned EC number	0.4270	0.6875	0.7272	yes	N/A
Q28029	VATF_BOVIN	No assigned EC number	0.4791	0.6875	0.7394	yes	N/A
Q9ZQX4	VATF_ARATH	No assigned EC number	0.3894	0.6796	0.6796	yes	N/A
O43046	VATF_SCHPO	No assigned EC number	0.3762	0.7187	0.7666	yes	N/A
Q16864	VATF_HUMAN	No assigned EC number	0.4687	0.6875	0.7394	yes	N/A
Q17029	VATF_ANOGA	No assigned EC number	0.4375	0.6875	0.6929	yes	N/A
Q24583	VATF1_DROME	No assigned EC number	0.4270	0.6875	0.7096	yes	N/A
P50408	VATF_RAT	No assigned EC number	0.4791	0.6875	0.7394	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	128
TIGR01101	115	TIGR01101, V_ATP_synt_F, vacuolar ATP synthase F s	1e-24
pfam01990	92	pfam01990, ATP-synt_F, ATP synthase (F/14-kDa) sub	1e-18
COG1436	104	COG1436, NtpG, Archaeal/vacuolar-type H+-ATPase su	4e-10
PRK03957	100	PRK03957, PRK03957, V-type ATP synthase subunit F;	9e-10
PRK01395	104	PRK01395, PRK01395, V-type ATP synthase subunit F;	1e-06

>gnl|CDD|130171 TIGR01101, V_ATP_synt_F, vacuolar ATP synthase F subunit

 Score = 90.3 bits (224), Expect = 1e-24
 Identities = 46/96 (47%), Positives = 59/96 (61%), Gaps = 8/96 (8%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
           +L+ +IGDED+VVGFLLGGIG        +    N  VVDK T   EIED F   ++R D
Sbjct: 6   KLIAVIGDEDTVVGFLLGGIGEIN-----KNRHPNFLVVDKNTTVSEIEDCFNRFLKRDD 60

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           + I+LI + +A+ IRH +D   RS    P VLEIPS
Sbjct: 61  IAIILINQHIAEMIRHAVDAHTRS---IPAVLEIPS 93

This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit [Transport and binding proteins, Cations and iron carrying compounds]. Length = 115

>gnl|CDD|216832 pfam01990, ATP-synt_F, ATP synthase (F/14-kDa) subunit

 Score = 74.2 bits (183), Expect = 1e-18
 Identities = 41/94 (43%), Positives = 53/94 (56%), Gaps = 20/94 (21%)

Query: 9   VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
           + +IGDED+V GF L GIG              V+VV  E    E E+AF  L+ R D+G
Sbjct: 1   IAVIGDEDTVTGFRLAGIGV-------------VYVVSPE----EAEEAFEELLEREDIG 43

Query: 69  IVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           I+LIT  +A+ IR T+D   R   V P +LEIPS
Sbjct: 44  IILITEDIAEEIRETID---RYESVLPAILEIPS 74

This family includes 14-kDa subunit from vATPases, which is in the peripheral catalytic part of the complex. The family also includes archaebacterial ATP synthase subunit F. Length = 92

>gnl|CDD|224353 COG1436, NtpG, Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]

 Score = 52.7 bits (127), Expect = 4e-10
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 17/96 (17%)

Query: 7   QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
             + +IGD D+V GF L G+               V+V D     DE+  A R L    D
Sbjct: 3   MKIAVIGDRDTVTGFRLAGV-------------RVVYVAD--DEEDELRAALRVLAED-D 46

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           VGI+LIT  +A++IR  +  R   + V P ++EIPS
Sbjct: 47  VGIILITEDLAEKIREEIR-RIIRSSVLPAIVEIPS 81

Length = 104

>gnl|CDD|179685 PRK03957, PRK03957, V-type ATP synthase subunit F; Provisional

 Score = 51.5 bits (124), Expect = 9e-10
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 22/93 (23%)

Query: 9   VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
           + ++GD D+V GF L G+             + V+ V      +E ++A + LV   ++G
Sbjct: 3   IAVVGDRDTVTGFRLAGL-------------TEVYEVKN---PEEAKNAIKELVENDEIG 46

Query: 69  IVLITRLVADRIRHTLDIRERSNQVYPIVLEIP 101
           I++IT  +A+ IR  + +        PI++EIP
Sbjct: 47  IIIITERIAEEIRDLISV------ALPIIVEIP 73

Length = 100

>gnl|CDD|179293 PRK01395, PRK01395, V-type ATP synthase subunit F; Provisional

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 24/96 (25%)

Query: 9   VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVR--RTD 66
           +G++GD+DS++ F   GI              +VF      P  + ++A  TL +    D
Sbjct: 6   IGVVGDKDSILPFKALGI--------------DVF------PVIDEQEAINTLRKLAMED 45

Query: 67  VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
            GI+ IT  +A  I  T  I    NQV P ++ IPS
Sbjct: 46  YGIIYITEQIAADIPET--IERYDNQVLPAIILIPS 79

Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
TIGR01101	115	V_ATP_synt_F vacuolar ATP synthase F subunit. This	100.0
KOG3432|consensus	121		100.0
PRK01395	104	V-type ATP synthase subunit F; Provisional	99.94
PRK03957	100	V-type ATP synthase subunit F; Provisional	99.94
PF01990	95	ATP-synt_F: ATP synthase (F/14-kDa) subunit; Inter	99.94
PRK02228	100	V-type ATP synthase subunit F; Provisional	99.93
PRK01189	104	V-type ATP synthase subunit F; Provisional	99.92
COG1436	104	NtpG Archaeal/vacuolar-type H+-ATPase subunit F [E	99.89
COG4075	110	Uncharacterized conserved protein, homolog of nitr	89.47

>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit

Probab=100.00  E-value=7.2e-33  Score=201.50  Aligned_cols=111  Identities=41%  Similarity=0.681  Sum_probs=102.8

Q ss_pred             ccceEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHH
Q psy963            4 EVLQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHT   83 (128)
Q Consensus         4 ~~~~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~   83 (128)
                      +.+.+||||||+||++|||||||+++....+     +||++++.+|+.+|++++|++++.++|||||+|||++|+.+++.
T Consensus         3 ~~~~~IaVIGD~Dtv~GF~LaGi~~~~~~~~-----~nf~~v~~~t~~eei~~~~~~~l~~~digIIlIte~~a~~i~~~   77 (115)
T TIGR01101         3 EKGKLIAVIGDEDTVVGFLLGGIGEINKNRH-----PNFLVVDKNTTVSEIEDCFNRFLKRDDIAIILINQHIAEMIRHA   77 (115)
T ss_pred             CCCcEEEEEecHHHHHHHHHhCCCccccccc-----cceeeecCCCCHHHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHH
Confidence            5678899999999999999999998654433     68999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCcccEEEEcCCCCCCCCCCCchHHHHHHhhc
Q psy963           84 LDIRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIA  122 (128)
Q Consensus        84 i~~~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~~~  122 (128)
                      |++|+   +..|+||+|||+.++|++++++|++|++...
T Consensus        78 I~~~~---~~~PaIieIP~k~~~y~~~~d~i~~~~~~~~  113 (115)
T TIGR01101        78 VDAHT---RSIPAVLEIPSKDHPYDASKDSILRRARGMF  113 (115)
T ss_pred             HHhcC---CcCCEEEEECCCCCCCCCcccHHHHHHHHHc
Confidence            99999   8999999999999999999999999999764

This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit

>KOG3432|consensus

Probab=100.00  E-value=1.6e-33  Score=203.56  Aligned_cols=115  Identities=37%  Similarity=0.614  Sum_probs=107.8

Q ss_pred             cccceEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHH
Q psy963            3 EEVLQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRH   82 (128)
Q Consensus         3 ~~~~~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~   82 (128)
                      .++++.||||||+||++||+|+|++.++.+.+     +||+++++.|+.+|++++|+.+++|+|++||+|++.+|++||+
T Consensus         4 a~~~~liavIgDEDT~tGfLlaGvg~v~~~r~-----~Nf~vv~~~Tt~~eiedaF~~f~~RdDIaIiLInq~~Ae~iR~   78 (121)
T KOG3432|consen    4 ADKRTLIAVIGDEDTVTGFLLAGVGEVNENRE-----PNFLVVDSKTTVEEIEDAFKSFTARDDIAIILINQFIAEMIRD   78 (121)
T ss_pred             cccCcEEEEeccccceeeeeeecccccccCCC-----CCEEEEeccCCHHHHHHHHHhhccccCeEEEEEhHHHHHHHHH
Confidence            46789999999999999999999998865554     7999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCcccEEEEcCCCCCCCCCCCchHHHHHHhhccCC
Q psy963           83 TLDIRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIATLP  125 (128)
Q Consensus        83 ~i~~~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~~~~~~  125 (128)
                      .++.|+   +..|+|+|||||++||+++++||++.+|.+.+-+
T Consensus        79 ~vD~h~---~~vPAvLeIpSKdhPYd~~kDSiL~R~r~~f~~e  118 (121)
T KOG3432|consen   79 RVDAHT---QAVPAVLEIPSKDHPYDPSKDSILRRARGLFGPE  118 (121)
T ss_pred             HHHhcc---ccCCeeEEecCCCCCCCchHHHHHHHHHhccChh
Confidence            999999   8999999999999999999999999999987543

>PRK01395 V-type ATP synthase subunit F; Provisional

Probab=99.94  E-value=1.1e-26  Score=166.04  Aligned_cols=96  Identities=28%  Similarity=0.464  Sum_probs=87.7

Q ss_pred             eEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHHH
Q psy963            7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDI   86 (128)
Q Consensus         7 ~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~~   86 (128)
                      +|||||||+||++||||+|+++             |.++++    +++.++|+++. ++|||||+|||++++.+++++++
T Consensus         4 ~kIaVIGD~dtv~GFrLaGi~~-------------~~v~~~----ee~~~~i~~l~-~~d~gII~Ite~~a~~i~~~i~~   65 (104)
T PRK01395          4 YKIGVVGDKDSILPFKALGIDV-------------FPVIDE----QEAINTLRKLA-MEDYGIIYITEQIAADIPETIER   65 (104)
T ss_pred             eeEEEEECHHHHHHHHHcCCee-------------EEecCh----HHHHHHHHHHh-cCCcEEEEEcHHHHHHhHHHHHH
Confidence            6999999999999999999963             888776    89999999976 88999999999999999999999


Q ss_pred             hhhCCCcccEEEEcCCCCCCCCCCCchHHHHHHhhc
Q psy963           87 RERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIA  122 (128)
Q Consensus        87 ~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~~~  122 (128)
                      ++ + +..|+|++|||++|+.+.+.++|.+|+++-+
T Consensus        66 ~~-~-~~~P~Il~IP~~~g~~~~g~~~i~~~v~kAI   99 (104)
T PRK01395         66 YD-N-QVLPAIILIPSNQGSLGIGLSRIQDNVEKAV   99 (104)
T ss_pred             hc-C-CCCCEEEEeCCCCCCccccHHHHHHHHHHHh
Confidence            96 3 7999999999999988767889999999865

>PRK03957 V-type ATP synthase subunit F; Provisional

Probab=99.94  E-value=1.7e-26  Score=163.61  Aligned_cols=94  Identities=28%  Similarity=0.515  Sum_probs=85.0

Q ss_pred             eEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHHH
Q psy963            7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDI   86 (128)
Q Consensus         7 ~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~~   86 (128)
                      +|||||||+||++||||+|++++            |.+.++    +|++++|+++++++|||||++||++++.+++.++ 
T Consensus         1 mkIaVIgD~dtv~GFrLaGi~~~------------~~v~~~----ee~~~~l~~l~~~~d~gII~ite~~~~~i~~~i~-   63 (100)
T PRK03957          1 MKIAVVGDRDTVTGFRLAGLTEV------------YEVKNP----EEAKNAIKELVENDEIGIIIITERIAEEIRDLIS-   63 (100)
T ss_pred             CEEEEEeCHHHHHHHHHcCCCce------------EEeCCH----HHHHHHHHHHhhCCCeEEEEEcHHHHHHHHHHHh-
Confidence            48999999999999999999752            665443    8999999999999999999999999999999887 


Q ss_pred             hhhCCCcccEEEEcCCCCCCCCCCCchHHHHHHhhc
Q psy963           87 RERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIA  122 (128)
Q Consensus        87 ~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~~~  122 (128)
                           +..|+|++||+++|+++.+++++.+++|+.+
T Consensus        64 -----~~~P~Ii~IP~~~g~~~~~~~~i~~~v~rai   94 (100)
T PRK03957         64 -----VALPIIVEIPDKSGSIERENDPVKELVRRAI   94 (100)
T ss_pred             -----cCCCEEEEECCCCCCCccchHHHHHHHHHHh
Confidence                 3569999999999999999999999999987

>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.94  E-value=2.4e-26  Score=160.01  Aligned_cols=95  Identities=34%  Similarity=0.604  Sum_probs=86.7

Q ss_pred             EEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHHHhh
Q psy963            9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRE   88 (128)
Q Consensus         9 IaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~~~~   88 (128)
                      ||||||+|+++||||+|+++             +++.   +++++++++|+++++++|+|||++|+++++.+++.+++++
T Consensus         1 IavIGd~~~v~gFrLaGv~~-------------~~~~---~~~ee~~~~l~~l~~~~~~gIIii~e~~~~~~~~~l~~~~   64 (95)
T PF01990_consen    1 IAVIGDRDTVLGFRLAGVEG-------------VYVN---TDPEEAEEALKELLKDEDVGIIIITEDLAEKIRDELDEYR   64 (95)
T ss_dssp             EEEEE-HHHHHHHHHTTSEE-------------EEES---HSHHHHHHHHHHHHHHTTEEEEEEEHHHHTTHHHHHHHHH
T ss_pred             CEEEeCHHHHHHHHHcCCCC-------------ccCC---CCHHHHHHHHHHHhcCCCccEEEeeHHHHHHHHHHHHHHH
Confidence            79999999999999999986             6665   2249999999999999999999999999999999999997


Q ss_pred             hCCCcccEEEEcCCCCCCCCCCCchHHHHHHh
Q psy963           89 RSNQVYPIVLEIPSALDAFHYTITDEDKQCRN  120 (128)
Q Consensus        89 ~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~  120 (128)
                      .+ +..|+|++||+++++++.+.+++.+++|+
T Consensus        65 ~~-~~~P~iv~IP~~~~~~~~~~~~i~~~v~r   95 (95)
T PF01990_consen   65 EE-SSLPLIVEIPSKEGSMGREKDSIRELVKR   95 (95)
T ss_dssp             HT-SSSSEEEEESTTCCCTSSCCHHHHHHHHH
T ss_pred             hc-cCCceEEEcCCCCCCCCcchHHHHHHhcC
Confidence            66 89999999999999999999999999985

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.

>PRK02228 V-type ATP synthase subunit F; Provisional

Probab=99.93  E-value=3.5e-25  Score=156.74  Aligned_cols=94  Identities=19%  Similarity=0.320  Sum_probs=82.8

Q ss_pred             eEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHHH
Q psy963            7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDI   86 (128)
Q Consensus         7 ~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~~   86 (128)
                      +|||||||+||++||||+|++++            |++.+    ++|++++|++++.++|||||++||++++.+.+.+++
T Consensus         1 mkIaVIGD~dtv~GFrLaGi~~~------------~~~~~----~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~   64 (100)
T PRK02228          1 MEIAVIGSPEFTTGFRLAGIRKV------------YEVPD----DEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRR   64 (100)
T ss_pred             CEEEEEeCHHHHHHHHHcCCceE------------EeeCC----HHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHH
Confidence            58999999999999999999862            44533    389999999999899999999999999999999999


Q ss_pred             hhhCCCcccEEEEcCCCCCCCCCCCchHHHHHHhhc
Q psy963           87 RERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIA  122 (128)
Q Consensus        87 ~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~~~  122 (128)
                      +..+ +..|+|++||+..|+     +++.+++++.+
T Consensus        65 ~~~~-~~~P~ii~IP~~~~~-----~~i~~~v~raI   94 (100)
T PRK02228         65 TLEE-SVEPTVVTLGGGGGS-----GGLREKIKRAI   94 (100)
T ss_pred             HHhc-CCCCEEEEECCCccc-----hHHHHHHHHHh
Confidence            6555 899999999986664     78999999876

>PRK01189 V-type ATP synthase subunit F; Provisional

Probab=99.92  E-value=1.3e-24  Score=155.40  Aligned_cols=95  Identities=22%  Similarity=0.376  Sum_probs=79.2

Q ss_pred             ceEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHH-HHH
Q psy963            6 LQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIR-HTL   84 (128)
Q Consensus         6 ~~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir-~~i   84 (128)
                      .+|||||||.||++||||+|++++            |.+.++    +++++ +.+.+.++|||||++||++++.++ +++
T Consensus         2 ~~kIaVvGd~DtilGFrlaGi~~v------------~~~~~~----e~~~~-~~~~l~~~~~gII~iTE~~a~~i~~~~i   64 (104)
T PRK01189          2 MSCITVIGERDVVLGFRLLGIGDT------------IEAEGK----DLVKK-FLEIFNNPKCKYIFVSESTKNMFDKNTL   64 (104)
T ss_pred             CceEEEEcCHHHHHHHHHcCCceE------------EEcCCH----HHHHH-HHHHHhcCCeEEEEEEHHHHhhCCHHHH
Confidence            358999999999999999999863            766443    66644 555667899999999999999999 899


Q ss_pred             HHhhhCCCcccEEEEcCCCCCCCCCCCchHHHHHHhhc
Q psy963           85 DIRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIA  122 (128)
Q Consensus        85 ~~~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~~~  122 (128)
                      ++|+  ++..|+||+||.+ |..  +.+++.+|+|+..
T Consensus        65 ~~~~--~~~~P~II~Ipip-g~~--~~~~i~~~ik~ai   97 (104)
T PRK01189         65 RSLE--SSSKPLVVFIPLP-GIS--EEESIEEMAKRIL   97 (104)
T ss_pred             HHHh--ccCCCeEEEEeCC-CCc--cchhHHHHHHHHh
Confidence            9999  3899999998877 432  3689999999987

>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]

Probab=99.89  E-value=7.4e-23  Score=146.71  Aligned_cols=97  Identities=35%  Similarity=0.516  Sum_probs=80.3

Q ss_pred             ceEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHH
Q psy963            6 LQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLD   85 (128)
Q Consensus         6 ~~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~   85 (128)
                      .++||||||+||++||||+|++++            |++.++   .+++.++++.+.++ |||||+||+++++.+++.++
T Consensus         2 ~~~I~VIGd~dtvtGFrLaGv~~~------------~v~~~~---~~~~~~~~~~l~~~-~~~iIiite~~a~~i~~~i~   65 (104)
T COG1436           2 MMKIAVIGDRDTVTGFRLAGVRVV------------YVADDE---EDELRAALRVLAED-DVGIILITEDLAEKIREEIR   65 (104)
T ss_pred             ceEEEEEEccchhhceeeecceeE------------EEecCh---hHHHHHHHHhhccC-CceEEEEeHHHHhhhHHHHH
Confidence            589999999999999999999862            334333   12688888888755 99999999999999999999


Q ss_pred             HhhhCCCcccEEEEcCCCCCCCCCCCchHHHHHHhhc
Q psy963           86 IRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIA  122 (128)
Q Consensus        86 ~~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~~~  122 (128)
                      ++.++ +..|+|++|||++.   .+.+.+.+.+++.+
T Consensus        66 ~~~~~-~~~P~iv~IPs~~~---~~~~~~~~~I~k~v   98 (104)
T COG1436          66 RIIRS-SVLPAIVEIPSPGK---EEEEPLRELIRRAV   98 (104)
T ss_pred             HHhhc-cCccEEEEeCCCCC---CccchHHHHHHHHH
Confidence            99876 89999999999722   35577888887765

>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]

Probab=89.47  E-value=0.72  Score=33.40  Aligned_cols=48  Identities=17%  Similarity=0.305  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHhcCCCeEEEE---EehHHHHHHHHHHHHhhhCCCcccEEEEcCCC
Q psy963           51 ADEIEDAFRTLVRRTDVGIVL---ITRLVADRIRHTLDIRERSNQVYPIVLEIPSA  103 (128)
Q Consensus        51 ~eei~~~~~~l~~~~digIIi---Ite~~a~~ir~~i~~~~~~~~~~P~IveIPs~  103 (128)
                      +|.+.++++++.++   ++++   +.|..++.|.+.+.+--.  +..=+|++||=.
T Consensus        53 pE~aik~i~D~s~~---AVlI~tVV~Ee~vekie~~~~Ekla--~eryTIi~ipI~  103 (110)
T COG4075          53 PESAIKAIRDLSDK---AVLIGTVVKEEKVEKIEELLKEKLA--NERYTIIEIPIE  103 (110)
T ss_pred             HHHHHHHHHHhhhc---eEEEEEecCHHHHHHHHHHHHHHhc--CCceEEEEeeee
Confidence            57777778877632   4444   458888999888777542  445589999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	128
2qai_A	111	Crystal Structure Of The V-Type Atp Synthase Subuni		1e-04

>pdb|2QAI|A Chain A, Crystal Structure Of The V-Type Atp Synthase Subunit F From Pyrococcus Furiosus. Nesg Target Pfr7. Length = 111

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 22/98 (22%)
Query: 13  GDEDSVVGFLLGGIGHQTIT--PPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIV 70
           GD D+VVGF L G+ H+       L++V             +   +  R L+ R DVGI+
Sbjct: 7   GDSDTVVGFRLAGV-HEAYEYDESLESV-------------ERARNKLRELLERDDVGII 52
Query: 71  LITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFH 108
           LIT  +A RI    +++      +PI+L+IP    + +
Sbjct: 53  LITERLAQRIGSLPEVK------FPIILQIPDKFGSIY 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
2qai_A	111	V-type ATP synthase subunit F; VATF_pyrfu, ATPF, N	2e-18
3aon_B	115	V-type sodium ATPase subunit G; V-ATPase, coiled-c	4e-15
2d00_A	109	V-type ATP synthase subunit F; V-ATPase, CHEY, FRE	1e-13
2i4r_A	102	V-type ATP synthase subunit F; NESG, GR52A, ATP sy	5e-13
2ov6_A	101	V-type ATP synthase subunit F; F subunit, A1AO ATP	5e-11

>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus} Length = 111

 Score = 73.7 bits (181), Expect = 2e-18
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 18/94 (19%)

Query: 9   VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
           + ++GD D+VVGF L G+                   +     +   +  R L+ R DVG
Sbjct: 3   IVVMGDSDTVVGFRLAGVHE------------AYEYDESLESVERARNKLRELLERDDVG 50

Query: 69  IVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           I+LIT  +A RI    +        +PI+L+IP 
Sbjct: 51  IILITERLAQRIGSLPE------VKFPIILQIPD 78

>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae} Length = 115

 Score = 65.5 bits (160), Expect = 4e-15
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 20/94 (21%)

Query: 9   VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
           +G++GD+DSV  F L G                V      T   EI      + +  + G
Sbjct: 5   IGVVGDKDSVSPFRLFGFD--------------VQHG---TTKTEIRKTIDEMAKN-EYG 46

Query: 69  IVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           ++ IT   A+ +  T++      Q+ P ++ IPS
Sbjct: 47  VIYITEQCANLVPETIE--RYKGQLTPAIILIPS 78

>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H* Length = 109

 Score = 61.7 bits (150), Expect = 1e-13
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 18/94 (19%)

Query: 9   VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
           + +I D ++  GF L G+                +     + A+E +    TLV R    
Sbjct: 6   MAVIADPETAQGFRLAGL--------------EGYGA---SSAEEAQSLLETLVERGGYA 48

Query: 69  IVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           +V +   +       ++ R    +  P++L I  
Sbjct: 49  LVAVDEALLPDPERAVE-RLMRGRDLPVLLPIAG 81

>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1 Length = 102

 Score = 59.7 bits (145), Expect = 5e-13
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 17/94 (18%)

Query: 9   VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
           + ++GD D  +GF+L GI             S+++ V  +   +EI  A   +++R DVG
Sbjct: 12  LAVVGDPDFTIGFMLAGI-------------SDIYEVTSD---EEIVKAVEDVLKRDDVG 55

Query: 69  IVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           +V++ +    ++   L  RE   +V P  + +  
Sbjct: 56  VVIMKQEYLKKLPPVL-RREIDEKVEPTFVSVGG 88

>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei} Length = 101

 Score = 54.4 bits (131), Expect = 5e-11
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 17/94 (18%)

Query: 9   VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
           + +IG  + V GF L GI             S V+           E A R+++    VG
Sbjct: 3   LAVIGKSEFVTGFRLAGI-------------SKVYETPDI---PATESAVRSVLEDKSVG 46

Query: 69  IVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           I+++       +   L  +  +  V P V+ +  
Sbjct: 47  ILVMHNDDIGNLPEVLR-KNLNESVQPTVVALGG 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
3aon_B	115	V-type sodium ATPase subunit G; V-ATPase, coiled-c	99.95
2qai_A	111	V-type ATP synthase subunit F; VATF_pyrfu, ATPF, N	99.95
2d00_A	109	V-type ATP synthase subunit F; V-ATPase, CHEY, FRE	99.95
2ov6_A	101	V-type ATP synthase subunit F; F subunit, A1AO ATP	99.93
2i4r_A	102	V-type ATP synthase subunit F; NESG, GR52A, ATP sy	99.93

>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}

Probab=99.95  E-value=9.1e-29  Score=178.35  Aligned_cols=97  Identities=22%  Similarity=0.372  Sum_probs=88.8

Q ss_pred             ceEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHH
Q psy963            6 LQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLD   85 (128)
Q Consensus         6 ~~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~   85 (128)
                      .+|||||||+||++||||+|+++             |+|.+    ++|++++|++++++ |||||+|||++++.+++.++
T Consensus         2 ~mKiaVIGD~Dtv~GFrLaGie~-------------~~v~~----~ee~~~~~~~l~~~-digIIlIte~ia~~i~~~i~   63 (115)
T 3aon_B            2 TYKIGVVGDKDSVSPFRLFGFDV-------------QHGTT----KTEIRKTIDEMAKN-EYGVIYITEQCANLVPETIE   63 (115)
T ss_dssp             EEEEEEESCHHHHGGGGGGTCEE-------------ECCCS----HHHHHHHHHHHHHT-TEEEEEEEHHHHTTCHHHHH
T ss_pred             ceEEEEEECHHHHHHHHHcCCeE-------------EEeCC----HHHHHHHHHHHHhc-CceEEEEeHHHHHHhHHHHH
Confidence            47999999999999999999963             65534    49999999999988 99999999999999999999


Q ss_pred             HhhhCCCcccEEEEcCCCCCCCCCCCchHHHHHHhhc
Q psy963           86 IRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIA  122 (128)
Q Consensus        86 ~~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~~~  122 (128)
                      +|+  ++..|+|++|||++|++++++++|.+++++.+
T Consensus        64 ~~~--~~~~P~IveIPs~~g~~~~~~~~i~~~V~~ai   98 (115)
T 3aon_B           64 RYK--GQLTPAIILIPSHQGTLGIGLEEIQNSVEKAV   98 (115)
T ss_dssp             HHH--TSSSCEEEEECBTTBCCSHHHHHHHHHHHHHT
T ss_pred             HHh--CCCCCEEEEECCCCCCCCccHHHHHHHHHHHh
Confidence            998  37799999999999999889999999999876

>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}

Probab=99.95  E-value=1.3e-28  Score=176.92  Aligned_cols=94  Identities=30%  Similarity=0.526  Sum_probs=81.2

Q ss_pred             eEEEEEechhhHHHHHhhCccccccCCCCccccceEEE-eCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHH--HH
Q psy963            7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFV-VDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIR--HT   83 (128)
Q Consensus         7 ~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v-~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir--~~   83 (128)
                      +|||||||+||++||||+|+++             +++ ++++|+.+|++++|+++++++|||||+|||.+|+.++  +.
T Consensus         1 MKIaVIGD~Dtv~GFrLaGi~~-------------~~v~~~~~t~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~~~   67 (111)
T 2qai_A            1 MKIVVMGDSDTVVGFRLAGVHE-------------AYEYDESLESVERARNKLRELLERDDVGIILITERLAQRIGSLPE   67 (111)
T ss_dssp             CEEEEEECHHHHHHHHHHTCSE-------------EEECCSSHHHHHHHHHHHHHHHTCTTEEEEEEEHHHHHHHCSCCC
T ss_pred             CEEEEEECHHHHHHHHHcCCce-------------EEEecCCCCCHHHHHHHHHHHhhCCCeEEEEEcHHHHhhcccccc
Confidence            5899999999999999999986             566 7888888999999999999999999999999999999  66


Q ss_pred             HHHhhhCCCcccEEEEcCCCCCCCCCCCchHHHHHHhhc
Q psy963           84 LDIRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIA  122 (128)
Q Consensus        84 i~~~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~~~  122 (128)
                      ++        +|+|++|||++|+++ +++++.+++|+.+
T Consensus        68 i~--------~P~IleIPs~~g~~~-~~d~i~~~V~~ai   97 (111)
T 2qai_A           68 VK--------FPIILQIPDKFGSIY-GEDILRDVVRRAI   97 (111)
T ss_dssp             CS--------SSEEEEECTTC-------CTHHHHHHHHC
T ss_pred             cC--------CCEEEEECCCCCCCc-hHHHHHHHHHHHh
Confidence            65        699999999999998 8999999999876

>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*

Probab=99.95  E-value=7.4e-29  Score=177.02  Aligned_cols=98  Identities=18%  Similarity=0.235  Sum_probs=90.0

Q ss_pred             ceEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHH
Q psy963            6 LQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLD   85 (128)
Q Consensus         6 ~~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~   85 (128)
                      .+|||||||+||++||||+|+++             |+|.+    ++|++++|+++++++|||||+|||++++.+++.++
T Consensus         3 ~mkiaVIgD~dtv~GFrLaGi~~-------------~~v~~----~ee~~~~~~~l~~~~digIIlIte~~a~~i~~~i~   65 (109)
T 2d00_A            3 PVRMAVIADPETAQGFRLAGLEG-------------YGASS----AEEAQSLLETLVERGGYALVAVDEALLPDPERAVE   65 (109)
T ss_dssp             CCCEEEEECHHHHHHHHHTTSEE-------------EECSS----HHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHH
T ss_pred             ccEEEEEeCHHHHHHHHHcCCeE-------------EEeCC----HHHHHHHHHHHhhCCCeEEEEEeHHHHHhhHHHHH
Confidence            47999999999999999999964             66644    49999999999999999999999999999999999


Q ss_pred             HhhhCCCcccEEEEcCCCC---CCCCCCCchHHHHHHhhc
Q psy963           86 IRERSNQVYPIVLEIPSAL---DAFHYTITDEDKQCRNIA  122 (128)
Q Consensus        86 ~~~~~~~~~P~IveIPs~~---g~~~~~~~~i~k~~~~~~  122 (128)
                      +|+++ +..|+|++|||++   |++ .+++++.+++|+.+
T Consensus        66 ~~~~~-~~~P~Il~IPs~~~~~g~~-~~~~~i~~~V~~ai  103 (109)
T 2d00_A           66 RLMRG-RDLPVLLPIAGLKEAFQGH-DVEGYMRELVRKTI  103 (109)
T ss_dssp             HHTTC-CCCCEEEEESCGGGGGSSS-CHHHHHHHHHHHHH
T ss_pred             HHHhC-CCCeEEEEECCCcccCCCc-chHHHHHHHHHHHh
Confidence            99865 7899999999999   998 89999999999876

>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}

Probab=99.93  E-value=1.7e-27  Score=167.76  Aligned_cols=95  Identities=21%  Similarity=0.279  Sum_probs=81.7

Q ss_pred             eEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHHH
Q psy963            7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDI   86 (128)
Q Consensus         7 ~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~~   86 (128)
                      +|||||||+||++||||+|++++            |.|.++    +|++++|+++++++|||||+|||++++.+++.+++
T Consensus         1 MkiaVIGD~dtv~GFrLaGi~~v------------~~v~~~----ee~~~~~~~l~~~~digIIlite~~a~~i~~~i~~   64 (101)
T 2ov6_A            1 MELAVIGKSEFVTGFRLAGISKV------------YETPDI----PATESAVRSVLEDKSVGILVMHNDDIGNLPEVLRK   64 (101)
T ss_dssp             CCEEEEECHHHHHHHHHHTCCEE------------EECCST----TTHHHHHHHHHHHTSSSEEEEEHHHHTTCTTTTHH
T ss_pred             CEEEEEECHHHHHHHHHcCCCce------------EecCCH----HHHHHHHHHHhhCCCeEEEEEcHHHHHHhHHHHHH
Confidence            48999999999999999999973            656554    89999999999999999999999999999999954


Q ss_pred             hhhCCCcccEEEEcCCCCCCCCCCCchHHHHHHhhc
Q psy963           87 RERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIA  122 (128)
Q Consensus        87 ~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~~~  122 (128)
                      +..+ +..|+|++|||++    ++.+++.+++++.+
T Consensus        65 ~~~~-~~~P~Iv~IP~~~----~~~~~i~~~v~~ai   95 (101)
T 2ov6_A           65 NLNE-SVQPTVVALGGSG----SGSTSLREKIKQAV   95 (101)
T ss_dssp             HHHH-HCCSCEEEECTTS----SCCCCCCCCCSGGG
T ss_pred             HHhC-CCCcEEEEECCCC----CChhHHHHHHHHHh
Confidence            4433 6899999999999    23488888888764

>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1

Probab=99.93  E-value=2.1e-26  Score=162.98  Aligned_cols=84  Identities=24%  Similarity=0.490  Sum_probs=71.0

Q ss_pred             ceEEEEEechhhHHHHHhhCccccccCCCCccccceEE-EeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHH
Q psy963            6 LQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVF-VVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTL   84 (128)
Q Consensus         6 ~~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~-v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i   84 (128)
                      ..-+|||||+||++||||+||++             +. +.    +++|++++|+++++++|||||+|||.+|+.+++.+
T Consensus         9 ~~~~aVIGD~Dtv~GFrLaGi~~-------------~~~~~----~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~i   71 (102)
T 2i4r_A            9 SHMLAVVGDPDFTIGFMLAGISD-------------IYEVT----SDEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVL   71 (102)
T ss_dssp             CCEEEEEECHHHHHHHHHTTCCC-------------EEECC----SHHHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHH
T ss_pred             ceeEEEEcCHHHHHHHHHcCCCc-------------ccCCC----CHHHHHHHHHHHhhCCCeEEEEEeHHHHHHHHHHH
Confidence            46799999999999999999996             34 43    34999999999999999999999999999999999


Q ss_pred             HHhhhCCCcccEEEEcCCCCCCC
Q psy963           85 DIRERSNQVYPIVLEIPSALDAF  107 (128)
Q Consensus        85 ~~~~~~~~~~P~IveIPs~~g~~  107 (128)
                      ++|+.+ +.+|+|++|||+.|+.
T Consensus        72 ~~~~~~-~~~P~IieIPs~~g~~   93 (102)
T 2i4r_A           72 RREIDE-KVEPTFVSVGGTGGVE   93 (102)
T ss_dssp             HTTTTT-CCSSEEEEEC------
T ss_pred             HHHHhC-CCccEEEEECCCCCCc
Confidence            999965 6999999999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d2d00a1	104	c.149.1.1 (A:6-109) V-type ATP synthase subunit F,	9e-18
d2i4ra1	76	c.149.1.1 (A:4-79) V-type ATP synthase subunit F,	7e-15

>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF {Thermus thermophilus [TaxId: 274]} Length = 104

class: Alpha and beta proteins (a/b)
fold: AtpF-like
superfamily: AtpF-like
family: AtpF-like
domain: V-type ATP synthase subunit F, AtpF
species: Thermus thermophilus [TaxId: 274]

 Score = 70.5 bits (173), Expect = 9e-18
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 18/94 (19%)

Query: 9   VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
           + +I D ++  GF L G+                +     + A+E +    TLV R    
Sbjct: 1   MAVIADPETAQGFRLAGLE--------------GYGA---SSAEEAQSLLETLVERGGYA 43

Query: 69  IVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
           +V +   +       ++ R    +  P++L I  
Sbjct: 44  LVAVDEALLPDPERAVE-RLMRGRDLPVLLPIAG 76

>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]} Length = 76

class: Alpha and beta proteins (a/b)
fold: AtpF-like
superfamily: AtpF-like
family: AtpF-like
domain: V-type ATP synthase subunit F, AtpF
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 62.4 bits (152), Expect = 7e-15
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 17/92 (18%)

Query: 9   VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
           + ++GD D  +GF+L GI             S+++ V  +   +EI  A   +++R DVG
Sbjct: 1   LAVVGDPDFTIGFMLAGI-------------SDIYEVTSD---EEIVKAVEDVLKRDDVG 44

Query: 69  IVLITRLVADRIRHTLDIRERSNQVYPIVLEI 100
           +V++ +    ++   L  RE   +V P  + +
Sbjct: 45  VVIMKQEYLKKLPPVL-RREIDEKVEPTFVSV 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d2d00a1	104	V-type ATP synthase subunit F, AtpF {Thermus therm	99.93
d2i4ra1	76	V-type ATP synthase subunit F, AtpF {Archaeoglobus	99.88

>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: AtpF-like
superfamily: AtpF-like
family: AtpF-like
domain: V-type ATP synthase subunit F, AtpF
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=6.8e-27  Score=163.69  Aligned_cols=96  Identities=20%  Similarity=0.284  Sum_probs=86.3

Q ss_pred             EEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHHHhh
Q psy963            9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRE   88 (128)
Q Consensus         9 IaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~~~~   88 (128)
                      ||||||+||++||||+|+++             |.+.++    +|++++|+++++++|||||+|||++++.+++.+++++
T Consensus         1 IaViGd~dtv~GFrLaGi~~-------------~~v~~~----ee~~~~l~~l~~~~d~gII~Ite~~~~~i~~~i~~~~   63 (104)
T d2d00a1           1 MAVIADPETAQGFRLAGLEG-------------YGASSA----EEAQSLLETLVERGGYALVAVDEALLPDPERAVERLM   63 (104)
T ss_dssp             EEEEECHHHHHHHHHTTSEE-------------EECSSH----HHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHHT
T ss_pred             CEEEcCHHHHHHHHHcCCee-------------ecCCCH----HHHHHHHHHHHhCCCeEEEEEcHHHHHhhHHHHHHHH
Confidence            79999999999999999974             666554    9999999999999999999999999999999999998


Q ss_pred             hCCCcccEEEEcCCCCCCCCCCC--chHHHHHHhhc
Q psy963           89 RSNQVYPIVLEIPSALDAFHYTI--TDEDKQCRNIA  122 (128)
Q Consensus        89 ~~~~~~P~IveIPs~~g~~~~~~--~~i~k~~~~~~  122 (128)
                      .+ +..|+|++||+++|+++.+.  +++.+++|+.+
T Consensus        64 ~~-~~~P~Il~IP~~~g~~~~~~~~~~ir~~v~rAi   98 (104)
T d2d00a1          64 RG-RDLPVLLPIAGLKEAFQGHDVEGYMRELVRKTI   98 (104)
T ss_dssp             TC-CCCCEEEEESCGGGGGSSSCHHHHHHHHHHHHH
T ss_pred             hc-CCCCEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Confidence            65 78999999999999876654  46999999876

>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: AtpF-like
superfamily: AtpF-like
family: AtpF-like
domain: V-type ATP synthase subunit F, AtpF
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.88  E-value=2e-23  Score=139.22  Aligned_cols=76  Identities=26%  Similarity=0.502  Sum_probs=66.9

Q ss_pred             EEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHHHhh
Q psy963            9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRE   88 (128)
Q Consensus         9 IaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~~~~   88 (128)
                      ||||||+||++||||||++++            |.+.++    +|++++|+++++++|||||+|||++++.+++.+.+..
T Consensus         1 IaViGd~dtv~GF~LaGi~~~------------~~v~~~----ee~~~~i~~~~~~~digII~Ite~~a~~i~~~i~~~~   64 (76)
T d2i4ra1           1 LAVVGDPDFTIGFMLAGISDI------------YEVTSD----EEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREI   64 (76)
T ss_dssp             EEEEECHHHHHHHHHTTCCCE------------EECCSH----HHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHHHTTT
T ss_pred             CEEEechHHHHHHHHhCCCcc------------ccCCCH----HHHHHHHHHHhcCCCeEEEEEeHHHHHHhhHHHHHHH
Confidence            799999999999999999852            566554    9999999999999999999999999999999996644


Q ss_pred             hCCCcccEEEEcC
Q psy963           89 RSNQVYPIVLEIP  101 (128)
Q Consensus        89 ~~~~~~P~IveIP  101 (128)
                      .+ +..|+|++|.
T Consensus        65 ~~-~~~P~Vi~Ig   76 (76)
T d2i4ra1          65 DE-KVEPTFVSVG   76 (76)
T ss_dssp             TT-CCSSEEEEEC
T ss_pred             hc-CCCCEEEecC
Confidence            43 8999999984